BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041426
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 372
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDR 66
+K RP + FL+K S ++E+++ TMGT+ YA K++D K F R+++++D +
Sbjct: 74 IKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQ 133
Query: 67 KNLDLVLSQERG-TVILDDTESVWSDHTKNLKVV 99
K+L + + V++DD VW + +KVV
Sbjct: 134 KSLRRLFPCDTSMVVVIDDRGDVWDWNPNLIKVV 167
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 442
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDR 66
+K RP + FL+K S ++E+++ TMGT+ YA K++D K F R+++++D +
Sbjct: 82 IKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQ 141
Query: 67 KNLDLVLSQERG-TVILDDTESVWSDHTKNLKVV 99
K+L + + V++DD VW + +KVV
Sbjct: 142 KSLRRLFPCDTSMVVVIDDRGDVWDWNPNLIKVV 175
>pdb|2Q5E|A Chain A, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|B Chain B, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|C Chain C, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|D Chain D, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|E Chain E, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|F Chain F, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|G Chain G, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|H Chain H, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
Length = 187
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDS----NSKYFNSRIIAQEDFKVKD 65
RP+V FL++ +FE + T YA +LD ++ F + + VKD
Sbjct: 59 RPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQGCYVKD 118
Query: 66 RKNLDLVLSQERGTVILDDTESVWSDHTKNLKVVEN 101
L L R T+ILD++ + + H +N V++
Sbjct: 119 LSRLGRDL---RKTLILDNSPASYIFHPENAVPVQS 151
>pdb|2HHL|A Chain A, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|B Chain B, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|C Chain C, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|D Chain D, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
Length = 195
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDS----NSKYFNSRIIAQEDFKVKD 65
RP V FL++ +FE + T YA +LD ++ F + VKD
Sbjct: 70 RPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKD 129
Query: 66 RKNLDLVLSQERGTVILDDTESVWSDHTKNLKVVEN 101
L LS+ +I+D++ + + H +N V++
Sbjct: 130 LSRLGRELSK---VIIVDNSPASYIFHPENAVPVQS 162
>pdb|3L0Y|A Chain A, Crystal Structure Of Scp1 Phosphatase D98a Mutant
pdb|3L0Y|B Chain B, Crystal Structure Of Scp1 Phosphatase D98a Mutant
Length = 184
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDS----NSKYFNSRIIAQEDFKVKD 65
RP V FL++ +FE + T YA +LD ++ F + VKD
Sbjct: 60 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKD 119
Query: 66 RKNLDLVLSQERGTVILDDTESVWSDHTKN 95
L L R +ILD++ + + H N
Sbjct: 120 LSRLGRDL---RRVLILDNSPASYVFHPDN 146
>pdb|1TA0|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein With Associated Ligand
Length = 197
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDS----NSKYFNSRIIAQEDFKVKD 65
RP V FL++ +FE + T YA +LD ++ F + VKD
Sbjct: 57 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKD 116
Query: 66 RKNLDLVLSQERGTVILDDTESVWSDHTKN 95
L L R +ILD++ + + H N
Sbjct: 117 LSRLGRDL---RRVLILDNSPASYVFHPDN 143
>pdb|2GHQ|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHQ|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
Length = 181
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDS----NSKYFNSRIIAQEDFKVKD 65
RP V FL++ +FE + T YA +LD ++ F + VKD
Sbjct: 57 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKD 116
Query: 66 RKNLDLVLSQERGTVILDDTESVWSDHTKN 95
L L R +ILD++ + + H N
Sbjct: 117 LSRLGRDL---RRVLILDNSPASYVFHPDN 143
>pdb|3PGL|A Chain A, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
pdb|3PGL|B Chain B, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
Length = 180
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDS----NSKYFNSRIIAQEDFKVKD 65
RP V FL++ +FE + T YA +LD ++ F + VKD
Sbjct: 56 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKD 115
Query: 66 RKNLDLVLSQERGTVILDDTESVWSDHTKN 95
L L R +ILD++ + + H N
Sbjct: 116 LSRLGRDL---RRVLILDNSPASYVFHPDN 142
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 30 TMGTQCYATA------AVKVLDSNSKYFNSRIIAQEDFKVKDRKN 68
T+G++ Y A VKVLD++ S II+ DF V+D K+
Sbjct: 79 TIGSKTYGVAKKTKIYGVKVLDNSGSGSYSGIISGMDFAVQDSKS 123
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 30 TMGTQCYATA------AVKVLDSNSKYFNSRIIAQEDFKVKDRKN 68
T+G++ Y A VKVLD N S IIA DF D+ N
Sbjct: 76 TVGSRTYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNN 120
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 30 TMGTQCYATA------AVKVLDSNSKYFNSRIIAQEDFKVKDRKN 68
T+G++ Y A VKVLD N S IIA DF D+ N
Sbjct: 76 TVGSRTYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNN 120
>pdb|1T9Z|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein
Length = 197
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDS----NSKYFNSRIIAQEDFKVKD 65
RP V FL++ +FE + T YA LD ++ F + VKD
Sbjct: 57 RPHVDEFLQRXGELFECVLFTASLAKYADPVADXLDKWGAFRARLFRESCVFHRGNYVKD 116
Query: 66 RKNLDLVLSQERGTVILDDTESVWSDHTKN 95
L L R +I D++ + + H N
Sbjct: 117 LSRLGRDL---RRVLIXDNSPASYVFHPDN 143
>pdb|3L0C|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
pdb|3L0C|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
Length = 184
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDS----NSKYFNSRIIAQEDFKVKD 65
RP V FL++ +FE + T YA +LD ++ F + VKD
Sbjct: 60 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKD 119
Query: 66 RKNLDLVLSQERGTVILDDTESVWSDHTKN 95
L L R +IL ++ + + H N
Sbjct: 120 LSRLGRDL---RRVLILANSPASYVFHPDN 146
>pdb|3L0B|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
pdb|3L0B|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
Length = 184
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDS----NSKYFNSRIIAQEDFKVKD 65
RP V FL++ +FE + T YA +LD ++ F + VKD
Sbjct: 60 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKD 119
Query: 66 RKNLDLVLSQERGTVILDDTESVWSDHTKN 95
L L R +IL ++ + + H N
Sbjct: 120 LSRLGRDL---RRVLILANSPASYVFHPDN 146
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 40 AVKVLDSNSKYFNSRIIAQEDFKVKDRKN 68
VKVLD N S IIA DF D+ N
Sbjct: 92 GVKVLDDNGSGQYSTIIAGMDFVASDKNN 120
>pdb|3M89|A Chain A, Structure Of Tubz-Gtp-G-S
Length = 427
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 19 KASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQED 60
K + +F Y + GT CY T AV +S+ + + I +ED
Sbjct: 56 KEADLFAGYKFSNGTTCYPTLAVNFAESDXXHLQN--IIKED 95
>pdb|1QCX|A Chain A, Pectin Lyase B
Length = 359
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 80 VILDDTESVWSDHTKNLKVVENMTTLGT 107
+ +DD++ VW DH ++ LGT
Sbjct: 156 ITVDDSDLVWIDHVTTARIGRQHIVLGT 183
>pdb|1IDJ|A Chain A, Pectin Lyase A
pdb|1IDJ|B Chain B, Pectin Lyase A
Length = 359
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 80 VILDDTESVWSDHTKNLKVVENMTTLGT 107
+ LDD + VW DH ++ LGT
Sbjct: 156 ITLDDCDLVWIDHVTTARIGRQHYVLGT 183
>pdb|1IDK|A Chain A, Pectin Lyase A
Length = 359
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 80 VILDDTESVWSDHTKNLKVVENMTTLGT 107
+ LDD + VW DH ++ LGT
Sbjct: 156 ITLDDCDLVWIDHVTTARIGRQHYVLGT 183
>pdb|3M8K|A Chain A, Protein Structure Of Type Iii Plasmid Segregation Tubz
Length = 428
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 19 KASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQED 60
K + +F Y + GT CY T AV +S+ + + I +ED
Sbjct: 36 KEADLFAGYKFSNGTTCYPTLAVNFAESDXXHLQN--IIKED 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,769,533
Number of Sequences: 62578
Number of extensions: 86346
Number of successful extensions: 230
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 27
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)