BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041426
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4
OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1
Length = 440
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 65/95 (68%)
Query: 6 LVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKD 65
+ KLRPFV +FLK+AS MF MY+ TMG + YA K+LD +YF R+I+++D V+
Sbjct: 176 MTKLRPFVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEYFGDRVISRDDGTVRH 235
Query: 66 RKNLDLVLSQERGTVILDDTESVWSDHTKNLKVVE 100
K+LD+VL QE +ILDDTE+ W H NL V+E
Sbjct: 236 EKSLDVVLGQESAVLILDDTENAWPKHKDNLIVIE 270
>sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis
thaliana GN=CPL3 PE=1 SV=2
Length = 1241
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 8/101 (7%)
Query: 8 KLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDF------ 61
KLRP + NFL+KAS ++E+++ TMG + YAT K+LD FN R+I++ D
Sbjct: 981 KLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPKGVLFNGRVISKGDDGDPLDG 1040
Query: 62 --KVKDRKNLDLVLSQERGTVILDDTESVWSDHTKNLKVVE 100
+V K+L+ V+ E VI+DD+ VW H NL VE
Sbjct: 1041 DERVPKSKDLEGVMGMESSVVIIDDSVRVWPQHKMNLIAVE 1081
>sp|Q8SV03|FCP1_ENCCU RNA polymerase II subunit A C-terminal domain phosphatase
OS=Encephalitozoon cuniculi (strain GB-M1) GN=FCP1 PE=1
SV=1
Length = 411
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 59/94 (62%), Gaps = 2/94 (2%)
Query: 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDR 66
VKLRP + L++ S ++E++V TMGT+ YA V+++D + KYF+ RII +++ +
Sbjct: 96 VKLRPNLDYMLRRISKLYEIHVYTMGTRAYAERIVEIIDPSGKYFDDRIITRDENQGVLV 155
Query: 67 KNLDLVLSQE-RGTVILDDTESVWSDHTKNLKVV 99
K L + + R VILDD VW D+ +NL ++
Sbjct: 156 KRLSRLFPHDHRNIVILDDRPDVW-DYCENLVLI 188
>sp|Q9P376|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=fcp1 PE=1 SV=1
Length = 723
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDR 66
+K RP + FL+K S ++E+++ TMGT+ YA K++D K F R+++++D +
Sbjct: 220 IKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQ 279
Query: 67 KNLDLVLSQERG-TVILDDTESVWSDHTKNLKVV 99
K+L + + V++DD VW + +KVV
Sbjct: 280 KSLRRLFPCDTSMVVVIDDRGDVWDWNPNLIKVV 313
>sp|Q03254|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=FCP1 PE=1 SV=1
Length = 732
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDR 66
VK+RP ++ F K + +FEM++ TM T+ YA K++D + F RI+++++
Sbjct: 247 VKVRPGLKEFFAKVAPLFEMHIYTMATRAYALQIAKIVDPTGELFGDRILSRDENGSLTT 306
Query: 67 KNL-DLVLSQERGTVILDDTESVWSDHTKNLKVV 99
K+L L + + V++DD VW+ +KVV
Sbjct: 307 KSLAKLFPTDQSMVVVIDDRGDVWNWCPNLIKVV 340
>sp|Q7TSG2|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus
musculus GN=Ctdp1 PE=1 SV=1
Length = 960
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 8 KLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQED-----FK 62
+LRP ++FL+K + ++E++V T G++ YA LD K F+ RI+++++ K
Sbjct: 224 RLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSK 283
Query: 63 VKDRKNLDLVLSQERGTVILDDTESVW 89
+ +N L + I+DD E VW
Sbjct: 284 TGNLRN--LFPCGDSMVCIIDDREDVW 308
>sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo
sapiens GN=CTDP1 PE=1 SV=3
Length = 961
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 8 KLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQED-----FK 62
+LRP ++FL+K + ++E++V T G++ YA LD K F+ RI+++++ K
Sbjct: 224 RLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSK 283
Query: 63 VKDRKNLDLVLSQERGTVILDDTESVW 89
+ +N L + I+DD E VW
Sbjct: 284 TGNLRN--LFPCGDSMVCIIDDREDVW 308
>sp|Q5XIK8|CTSL2_RAT CTD small phosphatase-like protein 2 OS=Rattus norvegicus
GN=Ctdspl2 PE=2 SV=1
Length = 465
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDR 66
V+LRPF R FL++ S M+E+ + T + YA + +LD + R+ + V+
Sbjct: 325 VRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGN 384
Query: 67 --KNLDLVLSQERGTVILDDTESVWSDHTKN 95
K+L+++ T+I+D++ ++ N
Sbjct: 385 YIKDLNILGRDLSKTIIIDNSPQAFAYQLSN 415
>sp|Q8BG15|CTSL2_MOUSE CTD small phosphatase-like protein 2 OS=Mus musculus GN=Ctdspl2
PE=1 SV=1
Length = 465
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDR 66
V+LRPF R FL++ S M+E+ + T + YA + +LD + R+ + V+
Sbjct: 325 VRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGN 384
Query: 67 --KNLDLVLSQERGTVILDDTESVWSDHTKN 95
K+L+++ T+I+D++ ++ N
Sbjct: 385 YIKDLNILGRDLSKTIIIDNSPQAFAYQLSN 415
>sp|Q05D32|CTSL2_HUMAN CTD small phosphatase-like protein 2 OS=Homo sapiens GN=CTDSPL2
PE=1 SV=2
Length = 466
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDR 66
V+LRPF R FL++ S M+E+ + T + YA + +LD + R+ + V+
Sbjct: 326 VRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGN 385
Query: 67 --KNLDLVLSQERGTVILDDTESVWSDHTKN 95
K+L+++ T+I+D++ ++ N
Sbjct: 386 YIKDLNILGRDLSKTIIIDNSPQAFAYQLSN 416
>sp|Q08BB5|CTL2A_DANRE CTD small phosphatase-like protein 2-A OS=Danio rerio GN=ctdspl2a
PE=2 SV=1
Length = 469
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDR 66
V+LRPF R FL++ S ++E+ + T + YA + +LD + R+ + V+
Sbjct: 329 VRLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGN 388
Query: 67 --KNLDLVLSQERGTVILDDTESVWSDHTKN 95
K+L+++ TVI+D++ ++ N
Sbjct: 389 YIKDLNILGRDLSKTVIIDNSPQAFAYQLSN 419
>sp|Q3KQB6|CTL2B_XENLA CTD small phosphatase-like protein 2-B OS=Xenopus laevis
GN=ctdspl2-b PE=2 SV=1
Length = 466
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDR 66
V+LRPF R FL++ S ++E+ + T + YA + +LD + R+ + V+
Sbjct: 326 VRLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFREHCVCVQGN 385
Query: 67 --KNLDLVLSQERGTVILDDTESVWSDHTKN 95
K+L+++ T+I+D++ ++ N
Sbjct: 386 YIKDLNILGRDLSKTIIIDNSPQAFAYQLSN 416
>sp|Q66KM5|CTSL2_XENTR CTD small phosphatase-like protein 2 OS=Xenopus tropicalis
GN=ctdspl2 PE=2 SV=1
Length = 466
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDR 66
V+LRPF R FL++ S ++E+ + T + YA + +LD + R+ + V+
Sbjct: 326 VRLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFREHCVCVQGN 385
Query: 67 --KNLDLVLSQERGTVILDDTESVWSDHTKN 95
K+L+++ T+I+D++ ++ N
Sbjct: 386 YIKDLNILGRDLSKTIIIDNSPQAFAYQLSN 416
>sp|A4QNX6|CTL2B_DANRE CTD small phosphatase-like protein 2-B OS=Danio rerio GN=ctdspl2b
PE=2 SV=1
Length = 460
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDR 66
V+LRPF R FL++ S ++E+ + T + YA + +LD + R+ + V+
Sbjct: 320 VRLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPRKQLVRHRLFREHCVCVQGN 379
Query: 67 --KNLDLVLSQERGTVILDDTESVWSDHTKN 95
K+L+++ T+I+D++ ++ N
Sbjct: 380 YIKDLNILGRDLSKTIIIDNSPQAFAYQLSN 410
>sp|Q801R4|CTL2A_XENLA CTD small phosphatase-like protein 2-A OS=Xenopus laevis
GN=ctdspl2-a PE=2 SV=1
Length = 466
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDR 66
V+LRPF R FL++ S ++E+ + T + YA + +LD + R+ + V+
Sbjct: 326 VRLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFREHCVCVQGN 385
Query: 67 --KNLDLVLSQERGTVILDDTESVWSDHTKN 95
K+L+++ T+I+D++ ++ N
Sbjct: 386 YIKDLNILGRDLSKTIIIDNSPQAFAYQLSN 416
>sp|Q5F3Z7|CTSL2_CHICK CTD small phosphatase-like protein 2 OS=Gallus gallus GN=CTDSPL2
PE=2 SV=2
Length = 466
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDR 66
V+LRPF R FL++ S ++E+ + T + YA + +LD + R+ + V+
Sbjct: 326 VRLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGN 385
Query: 67 --KNLDLVLSQERGTVILDDTESVWSDHTKN 95
K+L+++ T+I+D++ ++ N
Sbjct: 386 YIKDLNILGRDLSKTIIIDNSPQAFAYQLSN 416
>sp|Q5YDB5|CPL2_ARATH RNA polymerase II C-terminal domain phosphatase-like 2
OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=3
Length = 770
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 2 DNDKLVKLRPF---VRNFLK-KASSMFEMYVCTMGTQCYATAAVKVLDSNS-----KYFN 52
D LVKLRP +R++L K FE+YVCTM + YA ++LD + K
Sbjct: 251 DTSVLVKLRPAWEELRSYLTAKTRKRFEVYVCTMAERDYALEMWRLLDPEAHLISLKELR 310
Query: 53 SRIIAQEDFKVKDRKNLDLVLS----QERGTVILDDTESVWSD 91
RI+ K +K+L V + + +++DD VW D
Sbjct: 311 DRIVC---VKPDAKKSLLSVFNGGICHPKMAMVIDDRMKVWED 350
>sp|Q8BX07|CTDS2_MOUSE Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 2 OS=Mus musculus GN=Ctdsp2 PE=2 SV=1
Length = 270
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDS----NSKYFNSRIIAQEDFKVKD 65
RP+V FL++ +FE + T YA +LD ++ F + + VKD
Sbjct: 142 RPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFREACVFHQGCYVKD 201
Query: 66 RKNLDLVLSQERGTVILDDTESVWSDHTKNLKVVEN 101
L L R TVILD++ + + H +N V++
Sbjct: 202 LSRLGRDL---RKTVILDNSPASYIFHPENAVPVQS 234
>sp|Q5YDB6|CPL1_ARATH RNA polymerase II C-terminal domain phosphatase-like 1
OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1
Length = 967
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 2 DNDKLVKLRPF---VRNFLK-KASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIA 57
D LV++RP +R++L K FE+YVCTM + YA ++LD N+ +
Sbjct: 268 DTSVLVRMRPSWEELRSYLTAKGRKRFEVYVCTMAERDYALEMWRLLDPEGNLINTNDLL 327
Query: 58 QEDFKVKD--RKNLDLVL----SQERGTVILDDTESVWSD 91
VK +K+L V + +++DD VW +
Sbjct: 328 ARIVCVKSGFKKSLFNVFLDGTCHPKMALVIDDRLKVWDE 367
>sp|Q8JIL9|CNEP1_XENLA CTD nuclear envelope phosphatase 1 OS=Xenopus laevis GN=ctdnep1
PE=1 SV=1
Length = 244
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 6 LVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQE-DFKVK 64
V RP V FL+ S +E+ V T + Y +A LD+N R Q ++
Sbjct: 107 FVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNNKGVLRRRFYRQHCTLELG 166
Query: 65 DR-KNLDLVLSQERGTVILDDTESVWSDHTKN 95
K+L +V S VILD++ + H N
Sbjct: 167 SYIKDLSVVHSDLSSVVILDNSPGAYRSHPDN 198
>sp|Q28HW9|CNEP1_XENTR CTD nuclear envelope phosphatase 1 OS=Xenopus tropicalis GN=ctdnep1
PE=2 SV=1
Length = 244
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 6 LVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQE-DFKVK 64
V RP V FL+ S +E+ V T + Y +A LD+N R Q ++
Sbjct: 107 FVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNNRGVLRRRFYRQHCTLELG 166
Query: 65 DR-KNLDLVLSQERGTVILDDTESVWSDHTKN 95
K+L +V S VILD++ + H N
Sbjct: 167 SYIKDLSVVHSDLSSVVILDNSPGAYRSHPDN 198
>sp|O14595|CTDS2_HUMAN Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 2 OS=Homo sapiens GN=CTDSP2 PE=1 SV=2
Length = 271
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDS----NSKYFNSRIIAQEDFKVKD 65
RP+V FL++ +FE + T YA +LD ++ F + + VKD
Sbjct: 143 RPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQGCYVKD 202
Query: 66 RKNLDLVLSQERGTVILDDTESVWSDHTKNLKVVEN 101
L L R T+ILD++ + + H +N V++
Sbjct: 203 LSRLGRDL---RKTLILDNSPASYIFHPENAVPVQS 235
>sp|Q5U395|CNEPA_DANRE CTD nuclear envelope phosphatase 1A OS=Danio rerio GN=ctdnep1a PE=2
SV=1
Length = 245
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 6 LVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQE---DFK 62
V RP V FL+ S +E+ V T + Y +A LD+N R Q D
Sbjct: 108 FVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNNRGILKRRYYRQHCTLDLG 167
Query: 63 VKDRKNLDLVLSQERGTVILDDTESVWSDHTKN 95
K+L +V S VILD++ + H N
Sbjct: 168 -SYIKDLSVVHSDLSSIVILDNSPGAYRSHPDN 199
>sp|Q9N4V4|SCPL3_CAEEL CTD small phosphatase-like protein 3 OS=Caenorhabditis elegans
GN=scpl-3 PE=3 SV=1
Length = 287
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQE 59
V+LRP +R FL + + FE+ + T + YA +LD + R+ +
Sbjct: 103 VRLRPHLRTFLSRMAKTFEIIIFTASKKVYANKLCDILDPRKNHIRHRLFREH 155
>sp|Q5U3T3|CNEPB_DANRE CTD nuclear envelope phosphatase 1B OS=Danio rerio GN=ctdnep1b PE=2
SV=1
Length = 245
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 6 LVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNS-----KYFNSRIIAQED 60
V RP V FL+ S +E+ V T + Y +A LD+N +Y+
Sbjct: 108 FVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNNKAILKRRYYRQHCTLDSG 167
Query: 61 FKVKDRKNLDLVLSQERGTVILDDTESVWSDHTKN 95
+KD L +V VILD++ + H N
Sbjct: 168 SYIKD---LSVVHDDLSSVVILDNSPGAYRSHPDN 199
>sp|Q1RMV9|CNEP1_BOVIN CTD nuclear envelope phosphatase 1 OS=Bos taurus GN=CTDNEP1 PE=2
SV=1
Length = 244
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 6 LVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSN-----SKYFNSRIIAQED 60
V RP V FL+ S +E+ V T + Y +A LD++ +Y+ +
Sbjct: 107 FVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELG 166
Query: 61 FKVKDRKNLDLVLSQERGTVILDDTESVWSDHTKN 95
+KD L +V S VILD++ + H N
Sbjct: 167 SYIKD---LSVVHSDLSSIVILDNSPGAYRSHPDN 198
>sp|Q3B7T6|CNEP1_RAT CTD nuclear envelope phosphatase 1 OS=Rattus norvegicus GN=Ctdnep1
PE=2 SV=2
Length = 244
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 6 LVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSN-----SKYFNSRIIAQED 60
V RP V FL+ S +E+ V T + Y +A LD++ +Y+ +
Sbjct: 107 FVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELG 166
Query: 61 FKVKDRKNLDLVLSQERGTVILDDTESVWSDHTKN 95
+KD L +V S VILD++ + H N
Sbjct: 167 SYIKD---LSVVHSDLSSIVILDNSPGAYRSHPDN 198
>sp|Q3TP92|CNEP1_MOUSE CTD nuclear envelope phosphatase 1 OS=Mus musculus GN=Ctdnep1 PE=2
SV=2
Length = 244
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 6 LVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSN-----SKYFNSRIIAQED 60
V RP V FL+ S +E+ V T + Y +A LD++ +Y+ +
Sbjct: 107 FVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELG 166
Query: 61 FKVKDRKNLDLVLSQERGTVILDDTESVWSDHTKN 95
+KD L +V S VILD++ + H N
Sbjct: 167 SYIKD---LSVVHSDLSSIVILDNSPGAYRSHPDN 198
>sp|O95476|CNEP1_HUMAN CTD nuclear envelope phosphatase 1 OS=Homo sapiens GN=CTDNEP1 PE=1
SV=2
Length = 244
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 6 LVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSN-----SKYFNSRIIAQED 60
V RP V FL+ S +E+ V T + Y +A LD++ +Y+ +
Sbjct: 107 FVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELG 166
Query: 61 FKVKDRKNLDLVLSQERGTVILDDTESVWSDHTKN 95
+KD L +V S VILD++ + H N
Sbjct: 167 SYIKD---LSVVHSDLSSIVILDNSPGAYRSHPDN 198
>sp|Q54GB2|CTSL2_DICDI CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum
GN=ctdspl2 PE=3 SV=1
Length = 567
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 6 LVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSK 49
K RPF FL K S +FE+ + T + YA + ++D N+K
Sbjct: 428 FAKKRPFFEEFLHKVSDIFEVIIFTASQEVYANKLLNMIDPNNK 471
>sp|Q9XYL0|CTDS_DICDI Probable C-terminal domain small phosphatase OS=Dictyostelium
discoideum GN=fcpA PE=3 SV=1
Length = 306
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQ--EDFKVKDRK 67
RPFV +FL+ + FE+ V T YA + LD+ + + R+ + + K K
Sbjct: 178 RPFVDDFLRAIAEKFEIVVFTASLAKYADPVLDFLDT-GRVIHYRLFRESCHNHKGNYVK 236
Query: 68 NLDLVLSQERGTVILDDTESVWSDHTKN 95
+L + + T+I+D++ S + H +N
Sbjct: 237 DLSRLGRDLKSTIIVDNSPSSYLFHPEN 264
>sp|Q09695|YA22_SCHPO Uncharacterized protein C2F7.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC2F7.02c PE=1 SV=1
Length = 325
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 1 MDNDKLVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSN----SKYFNSRII 56
+ +D V RP V FLKK MFE+ V T YA + +LD + + F
Sbjct: 190 LQHDVRVVKRPGVDEFLKKMGDMFEIVVFTASLAKYADPVLDMLDHSHVIRHRLFREACC 249
Query: 57 AQEDFKVKDRKNLDLVLSQERGTVILDDTESVWSDHTKN 95
E VKD L L ++I+D++ S + H +
Sbjct: 250 NYEGNFVKDLSQLGRNLED---SIIIDNSPSSYIFHPSH 285
>sp|P20015|PRTT_TRIAL Proteinase T (Fragment) OS=Tritirachium album GN=PROT PE=1 SV=1
Length = 293
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 12 FVRNFLKKA-----SSMFEMYVCTMGTQCYATA------AVKVLDSNSKYFNSRIIAQED 60
F++NF + T+G Y A AVKVLD+N + NS +IA D
Sbjct: 67 FLKNFAGDGQDTDGNGHGTHVAGTVGGTTYGVAKKTSLFAVKVLDANGQGSNSGVIAGMD 126
Query: 61 FKVKD 65
F KD
Sbjct: 127 FVTKD 131
>sp|Q07800|PSR1_YEAST Phosphatase PSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PSR1 PE=1 SV=1
Length = 427
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDR--K 67
RP V FL++ +FE+ V T Y + +LD++ K + R+ + + + K
Sbjct: 299 RPGVEEFLERVGKLFEVVVFTASVSRYGDPLLDILDTD-KVIHHRLFREACYNYEGNYIK 357
Query: 68 NLDLVLSQERGTVILDDTESVWSDHTKN 95
NL + +ILD++ + + H ++
Sbjct: 358 NLSQIGRPLSDIIILDNSPASYIFHPQH 385
>sp|O15194|CTDSL_HUMAN CTD small phosphatase-like protein OS=Homo sapiens GN=CTDSPL PE=1
SV=2
Length = 276
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDS----NSKYFNSRIIAQEDFKVKD 65
RP V FL++ +FE + T YA +LD ++ F + VKD
Sbjct: 148 RPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKD 207
Query: 66 RKNLDLVLSQERGTVILDDTESVWSDHTKNLKVVEN 101
L LS+ +I+D++ + + H +N V++
Sbjct: 208 LSRLGRELSK---VIIVDNSPASYIFHPENAVPVQS 240
>sp|P58465|CTDSL_MOUSE CTD small phosphatase-like protein OS=Mus musculus GN=Ctdspl PE=2
SV=3
Length = 276
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDS----NSKYFNSRIIAQEDFKVKD 65
RP V FL++ +FE + T YA +LD ++ F + VKD
Sbjct: 148 RPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKD 207
Query: 66 RKNLDLVLSQERGTVILDDTESVWSDHTKNLKVVEN 101
L LS+ +I+D++ + + H +N V++
Sbjct: 208 LSRLGRELSK---VIIVDNSPASYIFHPENAVPVQS 240
>sp|Q07949|PSR2_YEAST Probable phosphatase PSR2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSR2 PE=1 SV=1
Length = 397
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNS----KYFNSRIIAQEDFKVKD 65
RP V FL + S ++E+ V T YA + LD N + F E +K+
Sbjct: 269 RPGVDEFLNRVSQLYEVVVFTASVSRYANPLLDTLDPNGTIHHRLFREACYNYEGNYIKN 328
Query: 66 RKNLDLVLSQERGTVILDDTESVWSDHTKN 95
+ LS+ T+ILD++ + + H ++
Sbjct: 329 LSQIGRPLSE---TIILDNSPASYIFHPQH 355
>sp|Q9PTJ6|CTDSL_CHICK CTD small phosphatase-like protein OS=Gallus gallus GN=NFI1 PE=2
SV=2
Length = 275
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDS----NSKYFNSRIIAQEDFKVKD 65
RP V FL++ +FE + T YA +LD ++ F + VKD
Sbjct: 147 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKD 206
Query: 66 RKNLDLVLSQERGTVILDDTESVWSDHTKNLKVVEN 101
L LS+ +I+D++ + + H +N V++
Sbjct: 207 LSRLGRELSK---VIIVDNSPASYIFHPENAVPVQS 239
>sp|A0LHQ7|SYP_SYNFM Proline--tRNA ligase OS=Syntrophobacter fumaroxidans (strain DSM
10017 / MPOB) GN=proS PE=3 SV=1
Length = 581
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 47 NSKYFNSRIIAQEDFKVKDRKNLDLVLSQERGTVILD 83
+S+Y++ I QE F++KDRK+ + VL+ VI D
Sbjct: 83 SSRYYD---IGQELFRIKDRKDREFVLAMTHEEVITD 116
>sp|P58466|CTDS1_MOUSE Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1 OS=Mus musculus GN=Ctdsp1 PE=1 SV=1
Length = 261
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDS----NSKYFNSRIIAQEDFKVKD 65
RP V FL++ +FE + T YA +LD ++ F + VKD
Sbjct: 132 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKD 191
Query: 66 RKNLDLVLSQERGTVILDDTESVWSDHTKN 95
L L R +ILD++ + + H N
Sbjct: 192 LSRLGRDL---RRVLILDNSPASYVFHPDN 218
>sp|Q9GZU7|CTDS1_HUMAN Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1 OS=Homo sapiens GN=CTDSP1 PE=1 SV=1
Length = 261
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDS----NSKYFNSRIIAQEDFKVKD 65
RP V FL++ +FE + T YA +LD ++ F + VKD
Sbjct: 132 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKD 191
Query: 66 RKNLDLVLSQERGTVILDDTESVWSDHTKN 95
L L R +ILD++ + + H N
Sbjct: 192 LSRLGRDL---RRVLILDNSPASYVFHPDN 218
>sp|Q8IC32|Y7014_PLAF7 Leucine-rich repeat and coiled-coil domain-containing protein
PF07_0014 OS=Plasmodium falciparum (isolate 3D7)
GN=PF07_0014 PE=4 SV=1
Length = 1058
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 59 EDFKVKDRKNLDLVLSQERGTVILDDTESVWSDHTKNL 96
E+FK D K + +++ + +I DDT+++ SD TKN+
Sbjct: 910 EEFKPHDNKEKNNIINDDTKNLISDDTKNIISDDTKNI 947
>sp|P06873|PRTK_TRIAL Proteinase K OS=Tritirachium album GN=PROK PE=1 SV=2
Length = 384
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 30 TMGTQCYATA------AVKVLDSNSKYFNSRIIAQEDFKVKDRKN 68
T+G++ Y A VKVLD N S IIA DF D+ N
Sbjct: 181 TVGSRTYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNN 225
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,488,948
Number of Sequences: 539616
Number of extensions: 1095534
Number of successful extensions: 3315
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3274
Number of HSP's gapped (non-prelim): 63
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)