Query 041426
Match_columns 109
No_of_seqs 119 out of 1053
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 06:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02250 FCP1_euk FCP1-like p 100.0 1.3E-33 2.8E-38 198.1 10.2 103 3-105 53-156 (156)
2 TIGR02251 HIF-SF_euk Dullard-l 100.0 1.4E-29 3.1E-34 178.1 9.9 102 3-104 37-140 (162)
3 KOG1605 TFIIF-interacting CTD 100.0 2E-30 4.3E-35 194.7 3.5 103 3-105 126-230 (262)
4 PF03031 NIF: NLI interacting 100.0 2.4E-29 5.2E-34 174.6 8.0 102 4-105 32-135 (159)
5 KOG0323 TFIIF-interacting CTD 99.9 7.2E-28 1.6E-32 197.4 10.7 107 2-108 195-302 (635)
6 TIGR02245 HAD_IIID1 HAD-superf 99.9 2.7E-24 5.8E-29 155.9 9.0 101 4-104 41-157 (195)
7 smart00577 CPDc catalytic doma 99.8 1.1E-20 2.3E-25 130.7 10.1 105 3-108 40-147 (148)
8 KOG2832 TFIIF-interacting CTD 99.8 1.1E-20 2.5E-25 146.4 6.9 104 4-108 210-315 (393)
9 COG5190 FCP1 TFIIF-interacting 99.8 1.3E-19 2.8E-24 142.3 5.5 102 3-105 247-350 (390)
10 COG5190 FCP1 TFIIF-interacting 99.2 1.9E-11 4.1E-16 96.5 3.5 107 2-108 70-179 (390)
11 PF13419 HAD_2: Haloacid dehal 97.7 8E-05 1.7E-09 50.2 5.4 82 5-88 74-162 (176)
12 TIGR02253 CTE7 HAD superfamily 97.7 7E-05 1.5E-09 53.6 4.7 79 6-86 92-177 (221)
13 TIGR02254 YjjG/YfnB HAD superf 97.5 0.00023 5.1E-09 50.7 5.4 78 7-86 96-180 (224)
14 TIGR01509 HAD-SF-IA-v3 haloaci 97.5 0.00026 5.6E-09 48.8 5.0 78 7-87 84-168 (183)
15 TIGR01449 PGP_bact 2-phosphogl 97.4 0.00027 5.9E-09 50.1 5.0 82 6-89 83-171 (213)
16 PRK09449 dUMP phosphatase; Pro 97.4 0.00043 9.3E-09 49.7 5.3 78 7-86 94-178 (224)
17 TIGR01428 HAD_type_II 2-haloal 97.4 0.00029 6.4E-09 49.8 4.3 78 8-87 92-176 (198)
18 PLN02770 haloacid dehalogenase 97.3 0.00049 1.1E-08 50.9 5.0 79 7-87 107-192 (248)
19 TIGR01685 MDP-1 magnesium-depe 97.3 0.00041 8.8E-09 49.6 4.2 93 6-98 43-152 (174)
20 PLN03243 haloacid dehalogenase 97.2 0.00052 1.1E-08 51.5 4.7 81 7-89 108-195 (260)
21 PRK14988 GMP/IMP nucleotidase; 97.2 0.00052 1.1E-08 50.1 4.5 81 7-89 92-179 (224)
22 TIGR01993 Pyr-5-nucltdase pyri 97.2 0.00051 1.1E-08 48.1 4.2 77 7-87 83-169 (184)
23 PRK13288 pyrophosphatase PpaX; 97.2 0.00078 1.7E-08 48.2 5.2 81 7-89 81-168 (214)
24 TIGR01422 phosphonatase phosph 97.2 0.00078 1.7E-08 49.5 5.3 80 7-87 98-185 (253)
25 PRK10563 6-phosphogluconate ph 97.2 0.00035 7.6E-09 50.2 3.1 81 7-90 87-173 (221)
26 COG1011 Predicted hydrolase (H 97.2 0.00098 2.1E-08 47.6 5.4 80 7-88 98-183 (229)
27 TIGR01454 AHBA_synth_RP 3-amin 97.2 0.00092 2E-08 47.5 5.0 81 7-89 74-161 (205)
28 PRK13222 phosphoglycolate phos 97.1 0.0011 2.4E-08 47.3 5.3 79 7-87 92-177 (226)
29 PRK11587 putative phosphatase; 96.9 0.0021 4.6E-08 46.3 5.4 78 7-87 82-166 (218)
30 cd01427 HAD_like Haloacid deha 96.9 0.0016 3.4E-08 41.7 4.2 40 7-46 23-63 (139)
31 PRK09456 ?-D-glucose-1-phospha 96.9 0.001 2.2E-08 47.3 3.3 83 6-89 82-171 (199)
32 PRK13226 phosphoglycolate phos 96.9 0.0026 5.6E-08 46.4 5.4 82 6-89 93-181 (229)
33 TIGR01681 HAD-SF-IIIC HAD-supe 96.9 0.00085 1.8E-08 45.1 2.6 79 9-88 30-120 (128)
34 TIGR03351 PhnX-like phosphonat 96.8 0.0029 6.3E-08 45.3 5.1 80 7-87 86-174 (220)
35 TIGR03333 salvage_mtnX 2-hydro 96.8 0.0032 7E-08 45.4 5.3 50 7-56 69-119 (214)
36 PRK09552 mtnX 2-hydroxy-3-keto 96.8 0.004 8.6E-08 45.0 5.8 38 7-44 73-111 (219)
37 TIGR01491 HAD-SF-IB-PSPlk HAD- 96.8 0.0022 4.8E-08 44.9 4.4 79 7-86 79-173 (201)
38 PRK10725 fructose-1-P/6-phosph 96.8 0.00099 2.1E-08 46.4 2.5 79 9-90 89-173 (188)
39 TIGR02252 DREG-2 REG-2-like, H 96.7 0.004 8.7E-08 44.0 5.3 77 7-86 104-187 (203)
40 TIGR01548 HAD-SF-IA-hyp1 haloa 96.7 0.0051 1.1E-07 43.5 5.4 76 9-86 107-188 (197)
41 PRK10826 2-deoxyglucose-6-phos 96.6 0.0029 6.4E-08 45.5 4.2 81 7-89 91-178 (222)
42 TIGR02009 PGMB-YQAB-SF beta-ph 96.6 0.0023 4.9E-08 44.3 3.2 79 7-89 87-172 (185)
43 PLN02575 haloacid dehalogenase 96.6 0.0045 9.7E-08 49.3 5.2 81 7-89 215-302 (381)
44 PRK13223 phosphoglycolate phos 96.6 0.0045 9.7E-08 46.5 5.0 80 7-88 100-186 (272)
45 TIGR00338 serB phosphoserine p 96.6 0.0028 6.1E-08 45.3 3.7 82 7-89 84-181 (219)
46 COG0637 Predicted phosphatase/ 96.6 0.0019 4.2E-08 47.2 2.8 80 7-87 85-170 (221)
47 PLN02779 haloacid dehalogenase 96.6 0.0046 9.9E-08 46.9 4.9 83 7-90 143-233 (286)
48 TIGR01549 HAD-SF-IA-v1 haloaci 96.6 0.0076 1.7E-07 40.7 5.6 75 8-86 64-144 (154)
49 TIGR01544 HAD-SF-IE haloacid d 96.6 0.0052 1.1E-07 47.0 5.2 94 6-99 119-239 (277)
50 TIGR02247 HAD-1A3-hyp Epoxide 96.5 0.0027 5.8E-08 45.2 3.3 81 6-88 92-181 (211)
51 PRK13478 phosphonoacetaldehyde 96.5 0.0069 1.5E-07 45.0 5.6 82 7-89 100-189 (267)
52 PRK13225 phosphoglycolate phos 96.4 0.0065 1.4E-07 46.0 4.8 79 7-87 141-223 (273)
53 PRK13582 thrH phosphoserine ph 96.3 0.0052 1.1E-07 43.4 3.9 80 7-87 67-155 (205)
54 TIGR01691 enolase-ppase 2,3-di 96.3 0.0077 1.7E-07 44.4 4.7 80 7-88 94-181 (220)
55 PLN02940 riboflavin kinase 96.3 0.0046 1E-07 48.8 3.8 80 7-88 92-179 (382)
56 TIGR01261 hisB_Nterm histidino 96.3 0.013 2.8E-07 41.1 5.6 78 6-86 27-130 (161)
57 PHA02530 pseT polynucleotide k 96.3 0.0033 7.1E-08 47.2 2.7 82 8-90 187-283 (300)
58 TIGR01489 DKMTPPase-SF 2,3-dik 96.2 0.0096 2.1E-07 41.1 4.5 41 7-47 71-112 (188)
59 TIGR01990 bPGM beta-phosphoglu 96.1 0.0073 1.6E-07 41.8 3.6 78 7-88 86-170 (185)
60 TIGR01488 HAD-SF-IB Haloacid D 96.0 0.018 3.9E-07 39.5 5.0 49 7-56 72-121 (177)
61 PHA02597 30.2 hypothetical pro 96.0 0.012 2.6E-07 41.5 4.2 81 7-90 73-159 (197)
62 TIGR01684 viral_ppase viral ph 95.9 0.026 5.7E-07 43.7 5.9 45 6-51 143-189 (301)
63 TIGR01662 HAD-SF-IIIA HAD-supe 95.9 0.031 6.7E-07 36.9 5.6 76 7-85 24-112 (132)
64 TIGR01686 FkbH FkbH-like domai 95.7 0.013 2.8E-07 45.0 3.6 77 9-87 32-114 (320)
65 TIGR01493 HAD-SF-IA-v2 Haloaci 95.6 0.0034 7.4E-08 43.3 0.1 72 7-86 89-166 (175)
66 TIGR02137 HSK-PSP phosphoserin 95.5 0.032 7E-07 40.4 4.9 50 7-57 67-116 (203)
67 TIGR00213 GmhB_yaeD D,D-heptos 95.5 0.061 1.3E-06 37.6 6.2 28 7-34 25-53 (176)
68 PHA03398 viral phosphatase sup 95.4 0.042 9.2E-07 42.6 5.5 45 6-51 145-191 (303)
69 PRK06698 bifunctional 5'-methy 95.4 0.034 7.3E-07 44.7 5.1 77 7-87 329-411 (459)
70 PLN02919 haloacid dehalogenase 95.3 0.038 8.2E-07 49.1 5.5 81 9-90 162-249 (1057)
71 COG4996 Predicted phosphatase 95.2 0.097 2.1E-06 36.5 6.3 96 4-101 37-144 (164)
72 PRK08942 D,D-heptose 1,7-bisph 95.2 0.092 2E-06 36.7 6.3 78 7-87 28-131 (181)
73 COG0546 Gph Predicted phosphat 94.8 0.095 2.1E-06 37.9 5.7 80 7-87 88-173 (220)
74 TIGR01668 YqeG_hyp_ppase HAD s 94.6 0.077 1.7E-06 37.1 4.6 71 8-86 43-118 (170)
75 TIGR01656 Histidinol-ppas hist 94.6 0.09 2E-06 35.7 4.8 81 7-87 26-129 (147)
76 TIGR01490 HAD-SF-IB-hyp1 HAD-s 94.5 0.065 1.4E-06 37.7 4.2 93 7-100 86-197 (202)
77 KOG3109 Haloacid dehalogenase- 94.5 0.062 1.3E-06 40.2 4.1 81 7-89 99-191 (244)
78 PRK10748 flavin mononucleotide 94.4 0.062 1.3E-06 39.3 3.9 73 7-86 112-190 (238)
79 PLN02811 hydrolase 94.3 0.06 1.3E-06 38.8 3.7 81 7-89 77-170 (220)
80 PF06941 NT5C: 5' nucleotidase 94.0 0.065 1.4E-06 38.0 3.3 76 8-96 73-155 (191)
81 TIGR02244 HAD-IG-Ncltidse HAD 93.7 0.073 1.6E-06 41.9 3.4 44 2-45 178-223 (343)
82 PLN02954 phosphoserine phospha 93.6 0.21 4.4E-06 35.7 5.4 49 7-55 83-133 (224)
83 PRK05446 imidazole glycerol-ph 93.3 0.35 7.5E-06 38.2 6.6 78 6-86 28-131 (354)
84 PRK06769 hypothetical protein; 93.2 0.21 4.5E-06 35.0 4.8 79 7-87 27-121 (173)
85 TIGR01664 DNA-3'-Pase DNA 3'-p 93.2 0.24 5.1E-06 34.7 5.0 74 9-86 43-137 (166)
86 PF00702 Hydrolase: haloacid d 92.4 0.15 3.2E-06 35.6 3.1 76 7-86 126-205 (215)
87 COG0560 SerB Phosphoserine pho 91.2 0.54 1.2E-05 34.3 5.0 93 7-100 76-186 (212)
88 PF12689 Acid_PPase: Acid Phos 90.2 0.34 7.3E-06 34.5 3.0 83 5-88 42-136 (169)
89 TIGR01459 HAD-SF-IIA-hyp4 HAD- 89.7 0.55 1.2E-05 34.4 4.0 41 7-47 23-66 (242)
90 PRK11590 hypothetical protein; 89.3 0.65 1.4E-05 33.3 4.1 39 7-45 94-134 (211)
91 PF05152 DUF705: Protein of un 87.7 1.7 3.7E-05 33.7 5.5 47 11-59 145-192 (297)
92 COG4359 Uncharacterized conser 87.5 1.8 4E-05 31.8 5.3 39 7-45 72-111 (220)
93 TIGR01545 YfhB_g-proteo haloac 87.1 1.1 2.3E-05 32.5 4.0 36 8-43 94-131 (210)
94 PF05761 5_nucleotid: 5' nucle 86.8 1.5 3.3E-05 35.7 5.1 45 2-46 177-223 (448)
95 PF12710 HAD: haloacid dehalog 85.9 1.3 2.8E-05 30.4 3.8 45 11-55 92-138 (192)
96 TIGR01511 ATPase-IB1_Cu copper 85.8 0.93 2E-05 37.6 3.4 40 7-46 404-444 (562)
97 COG4502 5'(3')-deoxyribonucleo 84.3 0.94 2E-05 32.0 2.4 28 8-35 68-95 (180)
98 TIGR01663 PNK-3'Pase polynucle 83.8 4.8 0.0001 33.5 6.7 75 8-86 197-294 (526)
99 KOG1615 Phosphoserine phosphat 82.7 2.4 5.3E-05 31.4 4.1 89 8-97 88-203 (227)
100 PF13344 Hydrolase_6: Haloacid 82.6 2.4 5.2E-05 27.2 3.7 35 9-43 15-50 (101)
101 TIGR01512 ATPase-IB2_Cd heavy 82.3 1.5 3.2E-05 36.1 3.2 73 7-86 361-435 (536)
102 PRK11133 serB phosphoserine ph 82.0 1.8 3.8E-05 33.7 3.4 80 7-87 180-275 (322)
103 TIGR01525 ATPase-IB_hvy heavy 81.3 2.4 5.2E-05 35.0 4.1 73 7-86 383-457 (556)
104 PRK08238 hypothetical protein; 81.0 2.6 5.7E-05 34.6 4.2 87 8-101 72-166 (479)
105 PF11019 DUF2608: Protein of u 75.3 8.8 0.00019 28.8 5.3 83 7-89 80-191 (252)
106 TIGR01533 lipo_e_P4 5'-nucleot 72.6 11 0.00024 28.6 5.3 79 8-89 118-201 (266)
107 PF06888 Put_Phosphatase: Puta 72.1 5.7 0.00012 29.7 3.6 41 7-47 70-113 (234)
108 KOG2914 Predicted haloacid-hal 70.6 7.6 0.00016 28.8 3.9 94 7-101 91-197 (222)
109 TIGR01670 YrbI-phosphatas 3-de 68.8 4.9 0.00011 27.4 2.5 73 8-87 30-103 (154)
110 PF05822 UMPH-1: Pyrimidine 5' 65.3 10 0.00022 28.6 3.8 94 6-99 88-207 (246)
111 PRK11009 aphA acid phosphatase 62.6 15 0.00033 27.4 4.2 77 7-87 113-195 (237)
112 TIGR01672 AphA HAD superfamily 62.1 15 0.00033 27.3 4.2 76 10-89 116-197 (237)
113 cd02974 AhpF_NTD_N Alkyl hydro 60.9 11 0.00024 24.1 2.8 35 10-45 7-41 (94)
114 COG2179 Predicted hydrolase of 60.0 19 0.00041 26.0 4.1 86 10-101 48-139 (175)
115 PF08484 Methyltransf_14: C-me 59.5 49 0.0011 23.1 6.2 38 12-51 56-94 (160)
116 PF07615 Ykof: YKOF-related Fa 54.5 13 0.00029 23.1 2.4 23 24-46 4-26 (81)
117 PF09419 PGP_phosphatase: Mito 52.6 38 0.00083 24.0 4.7 78 8-92 59-154 (168)
118 KOG3085 Predicted hydrolase (H 51.6 14 0.0003 27.8 2.4 80 6-88 112-197 (237)
119 PHA03050 glutaredoxin; Provisi 47.2 39 0.00083 22.0 3.8 35 14-48 3-37 (108)
120 COG0647 NagD Predicted sugar p 46.5 32 0.00069 26.3 3.7 35 10-44 26-61 (269)
121 PF08645 PNK3P: Polynucleotide 45.9 23 0.00051 24.5 2.7 27 6-32 27-54 (159)
122 PHA01818 hypothetical protein 45.3 32 0.00069 27.6 3.6 32 17-48 237-272 (458)
123 PRK09484 3-deoxy-D-manno-octul 42.0 18 0.00039 25.4 1.7 59 22-86 63-122 (183)
124 COG1428 Deoxynucleoside kinase 41.0 36 0.00078 25.3 3.2 43 3-46 127-172 (216)
125 cd04907 ACT_ThrD-I_2 Second of 40.6 33 0.00072 21.1 2.6 19 10-28 11-30 (81)
126 COG0241 HisB Histidinol phosph 40.4 1.1E+02 0.0024 22.0 5.6 79 8-86 31-132 (181)
127 cd02514 GT13_GLCNAC-TI GT13_GL 39.6 55 0.0012 25.8 4.2 40 5-44 6-52 (334)
128 PRK10671 copA copper exporting 39.2 48 0.001 28.9 4.1 40 8-47 650-690 (834)
129 PRK11033 zntA zinc/cadmium/mer 38.9 47 0.001 28.7 4.0 40 8-47 568-608 (741)
130 COG4030 Uncharacterized protei 38.6 45 0.00098 25.6 3.4 39 7-45 82-120 (315)
131 TIGR01124 ilvA_2Cterm threonin 38.5 24 0.00052 29.1 2.1 22 9-30 428-450 (499)
132 CHL00163 ycf65 putative riboso 36.8 24 0.00051 23.2 1.5 30 79-108 8-39 (99)
133 TIGR02726 phenyl_P_delta pheny 36.4 23 0.0005 24.9 1.5 61 21-86 48-108 (169)
134 cd00338 Ser_Recombinase Serine 36.0 43 0.00093 21.6 2.7 42 7-48 48-95 (137)
135 TIGR02826 RNR_activ_nrdG3 anae 36.0 54 0.0012 22.5 3.3 25 10-34 74-99 (147)
136 TIGR00417 speE spermidine synt 35.8 66 0.0014 24.0 4.0 39 13-51 135-183 (270)
137 TIGR01689 EcbF-BcbF capsule bi 35.7 59 0.0013 21.9 3.4 41 8-48 24-77 (126)
138 PF00239 Resolvase: Resolvase, 35.1 29 0.00063 22.5 1.8 22 10-32 47-68 (141)
139 PF09107 SelB-wing_3: Elongati 33.7 26 0.00056 19.9 1.1 19 30-48 20-38 (50)
140 cd06387 PBP1_iGluR_AMPA_GluR3 33.6 1.2E+02 0.0027 23.8 5.4 79 3-87 101-190 (372)
141 cd02511 Beta4Glucosyltransfera 33.3 83 0.0018 22.3 4.1 31 12-42 14-45 (229)
142 KOG0693 Myo-inositol-1-phospha 33.2 17 0.00037 29.5 0.4 32 9-40 209-240 (512)
143 cd02525 Succinoglycan_BP_ExoA 32.2 1.2E+02 0.0025 21.1 4.6 36 11-46 13-54 (249)
144 cd03031 GRX_GRX_like Glutaredo 31.7 53 0.0012 22.7 2.7 22 26-47 2-29 (147)
145 PRK10824 glutaredoxin-4; Provi 31.3 92 0.002 20.6 3.7 36 13-48 4-44 (115)
146 cd06423 CESA_like CESA_like is 31.1 1.1E+02 0.0025 19.1 4.1 34 12-45 11-48 (180)
147 TIGR03278 methan_mark_10 putat 30.4 65 0.0014 26.0 3.3 38 9-46 87-131 (404)
148 KOG3120 Predicted haloacid deh 30.2 1.1E+02 0.0023 23.3 4.2 37 9-45 85-123 (256)
149 PRK09224 threonine dehydratase 29.6 44 0.00095 27.6 2.3 28 9-36 432-462 (504)
150 KOG3877 NADH:ubiquinone oxidor 29.3 47 0.001 26.3 2.3 31 13-43 260-290 (393)
151 PF13394 Fer4_14: 4Fe-4S singl 28.9 23 0.0005 22.5 0.5 30 11-40 65-97 (119)
152 TIGR01458 HAD-SF-IIA-hyp3 HAD- 28.0 96 0.0021 22.9 3.7 28 9-36 22-50 (257)
153 PLN02645 phosphoglycolate phos 27.6 1E+02 0.0023 23.4 3.9 34 11-44 47-81 (311)
154 smart00857 Resolvase Resolvase 27.5 75 0.0016 20.8 2.8 25 9-33 50-75 (148)
155 cd03769 SR_IS607_transposase_l 27.3 69 0.0015 21.3 2.6 23 9-31 47-70 (134)
156 PF13704 Glyco_tranf_2_4: Glyc 27.2 1.1E+02 0.0023 18.5 3.3 74 11-90 5-86 (97)
157 PF08030 NAD_binding_6: Ferric 26.8 1.5E+02 0.0032 19.5 4.2 38 6-43 114-154 (156)
158 PRK10444 UMP phosphatase; Prov 26.7 1.1E+02 0.0024 22.6 3.8 37 9-45 18-55 (248)
159 COG1117 PstB ABC-type phosphat 26.6 84 0.0018 23.9 3.1 23 13-35 188-210 (253)
160 PF02290 SRP14: Signal recogni 26.6 26 0.00056 22.4 0.4 12 14-25 4-15 (93)
161 cd04885 ACT_ThrD-I Tandem C-te 26.3 1.4E+02 0.003 17.2 4.1 21 7-27 5-26 (68)
162 PF12641 Flavodoxin_3: Flavodo 26.0 1.2E+02 0.0025 21.2 3.6 33 10-43 55-91 (160)
163 TIGR01460 HAD-SF-IIA Haloacid 25.9 1.2E+02 0.0026 22.0 3.9 34 10-43 16-54 (236)
164 TIGR01456 CECR5 HAD-superfamil 25.9 1E+02 0.0023 23.5 3.7 34 10-43 18-60 (321)
165 COG1880 CdhB CO dehydrogenase/ 25.7 82 0.0018 22.5 2.8 23 22-44 107-129 (170)
166 cd03027 GRX_DEP Glutaredoxin ( 25.3 76 0.0017 18.3 2.3 25 25-49 2-26 (73)
167 cd02066 GRX_family Glutaredoxi 25.2 85 0.0018 17.1 2.4 23 26-48 2-24 (72)
168 PF05440 MtrB: Tetrahydrometha 24.9 58 0.0013 21.2 1.8 18 34-51 43-60 (97)
169 PRK10638 glutaredoxin 3; Provi 24.4 82 0.0018 18.8 2.4 25 25-49 3-27 (83)
170 cd03768 SR_ResInv Serine Recom 24.3 71 0.0015 20.4 2.2 24 8-31 40-63 (126)
171 PF09119 SicP-binding: SicP bi 24.2 92 0.002 19.7 2.5 27 13-47 40-66 (81)
172 TIGR02109 PQQ_syn_pqqE coenzym 24.1 1.4E+02 0.003 23.0 4.1 34 9-42 66-103 (358)
173 PRK05301 pyrroloquinoline quin 23.9 1.3E+02 0.0027 23.4 3.8 34 9-42 75-112 (378)
174 PF12816 Vps8: Golgi CORVET co 23.5 55 0.0012 23.6 1.6 24 22-45 66-91 (196)
175 PF02196 RBD: Raf-like Ras-bin 22.7 1.1E+02 0.0023 18.3 2.6 22 3-24 11-34 (71)
176 TIGR03143 AhpF_homolog putativ 22.5 1.1E+02 0.0023 25.3 3.4 33 13-45 357-389 (555)
177 PF00535 Glycos_transf_2: Glyc 22.1 1.2E+02 0.0026 19.0 3.0 33 12-44 12-48 (169)
178 PRK13944 protein-L-isoaspartat 22.0 88 0.0019 22.2 2.4 30 22-51 141-170 (205)
179 TIGR00365 monothiol glutaredox 21.9 1.6E+02 0.0034 18.5 3.4 34 15-48 3-41 (97)
180 TIGR01675 plant-AP plant acid 21.3 1.9E+02 0.004 21.6 4.1 95 10-105 122-227 (229)
181 PRK00192 mannosyl-3-phosphogly 21.1 1.6E+02 0.0035 21.6 3.8 39 9-47 22-61 (273)
182 COG0731 Fe-S oxidoreductases [ 21.1 1.6E+02 0.0035 22.9 3.8 37 9-48 93-132 (296)
183 PF05822 UMPH-1: Pyrimidine 5' 21.0 2.3E+02 0.005 21.4 4.6 36 9-44 210-245 (246)
184 TIGR02666 moaA molybdenum cofa 21.0 1.6E+02 0.0035 22.4 3.9 34 9-42 72-110 (334)
185 PRK00164 moaA molybdenum cofac 20.9 1.5E+02 0.0032 22.6 3.6 26 9-34 78-106 (331)
186 TIGR01497 kdpB K+-transporting 20.9 1.4E+02 0.0031 25.8 3.8 40 8-47 446-486 (675)
187 cd03767 SR_Res_par Serine reco 20.9 99 0.0021 20.8 2.4 22 9-30 46-67 (146)
188 TIGR00336 pyrE orotate phospho 20.2 3.1E+02 0.0066 19.0 6.6 58 30-87 62-119 (173)
No 1
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=1.3e-33 Score=198.14 Aligned_cols=103 Identities=42% Similarity=0.640 Sum_probs=97.2
Q ss_pred cceeEEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCCceeccCc-CCCCCCcEEE
Q 041426 3 NDKLVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDRKNLDL-VLSQERGTVI 81 (109)
Q Consensus 3 ~~~~v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~~~KdL~~-l~~~~~~vii 81 (109)
...++++|||+.+||++|++.||++|||+++++||++|++.|||.+.+|++|+++|++|...++|||+. ++++++++||
T Consensus 53 ~~~~v~~rPgv~efL~~l~~~yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~~~~KdL~~i~~~d~~~vvi 132 (156)
T TIGR02250 53 MWYLTKLRPFLHEFLKEASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESGSPHTKSLLRLFPADESMVVI 132 (156)
T ss_pred eEEEEEECCCHHHHHHHHHhhcEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCCCCccccHHHHcCCCcccEEE
Confidence 357899999999999999999999999999999999999999999989999999988888779999954 5889999999
Q ss_pred EcCCchhhccCCCCeEEeCccccc
Q 041426 82 LDDTESVWSDHTKNLKVVENMTTL 105 (109)
Q Consensus 82 vDd~~~~~~~~~~N~i~i~~~~~~ 105 (109)
|||+|++|..||+|+|+|+||.||
T Consensus 133 vDd~~~~~~~~~~N~i~i~~~~~f 156 (156)
T TIGR02250 133 IDDREDVWPWHKRNLIQIEPYNYF 156 (156)
T ss_pred EeCCHHHhhcCccCEEEeCCcccC
Confidence 999999999999999999999998
No 2
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.96 E-value=1.4e-29 Score=178.07 Aligned_cols=102 Identities=24% Similarity=0.302 Sum_probs=93.5
Q ss_pred cceeEEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCC--CCceeccCcCCCCCCcEE
Q 041426 3 NDKLVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFK--VKDRKNLDLVLSQERGTV 80 (109)
Q Consensus 3 ~~~~v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~--~~~~KdL~~l~~~~~~vi 80 (109)
..+||++|||+.+||++|+++|||+|||+|++.||++|++.|||.+.+|..++++.+|.. ..+.|+|+.++++++++|
T Consensus 37 ~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vI 116 (162)
T TIGR02251 37 IPVYVFKRPHVDEFLERVSKWYELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGKYVKDLSLVGKDLSKVI 116 (162)
T ss_pred EEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCCEEeEchhcCCChhhEE
Confidence 368999999999999999999999999999999999999999999878988877665542 247999999999999999
Q ss_pred EEcCCchhhccCCCCeEEeCcccc
Q 041426 81 ILDDTESVWSDHTKNLKVVENMTT 104 (109)
Q Consensus 81 ivDd~~~~~~~~~~N~i~i~~~~~ 104 (109)
||||++..|..+++|+|+|.+|..
T Consensus 117 iVDD~~~~~~~~~~NgI~i~~f~~ 140 (162)
T TIGR02251 117 IIDNSPYSYSLQPDNAIPIKSWFG 140 (162)
T ss_pred EEeCChhhhccCccCEeecCCCCC
Confidence 999999999999999999999985
No 3
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.96 E-value=2e-30 Score=194.73 Aligned_cols=103 Identities=19% Similarity=0.298 Sum_probs=97.0
Q ss_pred cceeEEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCC--CceeccCcCCCCCCcEE
Q 041426 3 NDKLVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKV--KDRKNLDLVLSQERGTV 80 (109)
Q Consensus 3 ~~~~v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~--~~~KdL~~l~~~~~~vi 80 (109)
..+||.+|||+++||..++++||+++|||+...||++|++.|||.+.++.+|+||.+|... .++|||+.+++++++||
T Consensus 126 ~~~yV~kRP~vdeFL~~~s~~~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~RlyR~~C~~~~g~yvKdls~~~~dL~~vi 205 (262)
T KOG1605|consen 126 HQVYVRKRPHVDEFLSRVSKWYELVLFTASLEVYADPLLDILDPDRKIISHRLYRDSCTLKDGNYVKDLSVLGRDLSKVI 205 (262)
T ss_pred eEEEEEcCCCHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHccCCCCeeeeeecccceEeECCcEEEEcceeccCcccEE
Confidence 5789999999999999999999999999999999999999999988899999999888754 58999999999999999
Q ss_pred EEcCCchhhccCCCCeEEeCccccc
Q 041426 81 ILDDTESVWSDHTKNLKVVENMTTL 105 (109)
Q Consensus 81 ivDd~~~~~~~~~~N~i~i~~~~~~ 105 (109)
||||+|.+|..||+|||||++|.--
T Consensus 206 IiDNsP~sy~~~p~NgIpI~sw~~d 230 (262)
T KOG1605|consen 206 IVDNSPQSYRLQPENGIPIKSWFDD 230 (262)
T ss_pred EEcCChHHhccCccCCCcccccccC
Confidence 9999999999999999999999643
No 4
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.96 E-value=2.4e-29 Score=174.58 Aligned_cols=102 Identities=26% Similarity=0.329 Sum_probs=81.3
Q ss_pred ceeEEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCC--CceeccCcCCCCCCcEEE
Q 041426 4 DKLVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKV--KDRKNLDLVLSQERGTVI 81 (109)
Q Consensus 4 ~~~v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~--~~~KdL~~l~~~~~~vii 81 (109)
.++|++|||+++||++++++||++|||+|++.||.+|++.|||++.+|.+++++.+|... .+.|||+.++++++++||
T Consensus 32 ~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~~~~~~~~~r~~~~~~~~~~~KdL~~l~~~~~~vvi 111 (159)
T PF03031_consen 32 GYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPVLDALDPNGKLFSRRLYRDDCTFDKGSYIKDLSKLGRDLDNVVI 111 (159)
T ss_dssp EEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHHHHHTTTTSSEEEEEEGGGSEEETTEEE--GGGSSS-GGGEEE
T ss_pred ceeEeeCchHHHHHHHHHHhceEEEEEeehhhhhhHHHHhhhhhccccccccccccccccccccccchHHHhhccccEEE
Confidence 689999999999999999999999999999999999999999988899877766555322 258999999999999999
Q ss_pred EcCCchhhccCCCCeEEeCccccc
Q 041426 82 LDDTESVWSDHTKNLKVVENMTTL 105 (109)
Q Consensus 82 vDd~~~~~~~~~~N~i~i~~~~~~ 105 (109)
|||++.+|..+++|+|+|++|..-
T Consensus 112 vDD~~~~~~~~~~N~i~v~~f~~~ 135 (159)
T PF03031_consen 112 VDDSPRKWALQPDNGIPVPPFFGD 135 (159)
T ss_dssp EES-GGGGTTSGGGEEE----SSC
T ss_pred EeCCHHHeeccCCceEEeccccCC
Confidence 999999999899999999998765
No 5
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.95 E-value=7.2e-28 Score=197.42 Aligned_cols=107 Identities=40% Similarity=0.665 Sum_probs=98.7
Q ss_pred CcceeEEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCCceeccCcC-CCCCCcEE
Q 041426 2 DNDKLVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDRKNLDLV-LSQERGTV 80 (109)
Q Consensus 2 ~~~~~v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~~~KdL~~l-~~~~~~vi 80 (109)
+..++||+||++.+||++++++||++|||+|++.||..|+++|||.+.+|++||++|++......+||..+ +++.+.||
T Consensus 195 ~~~~~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~~~~kt~dL~~~~p~g~smvv 274 (635)
T KOG0323|consen 195 DTEYLVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDESPFFKTLDLVLLFPCGDSMVV 274 (635)
T ss_pred CceEEEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCCCcccccccccCCCCCCccEE
Confidence 45799999999999999999999999999999999999999999999999999999999766667788665 57888999
Q ss_pred EEcCCchhhccCCCCeEEeCcccccccC
Q 041426 81 ILDDTESVWSDHTKNLKVVENMTTLGTK 108 (109)
Q Consensus 81 ivDd~~~~~~~~~~N~i~i~~~~~~~~~ 108 (109)
||||+.++|..++.|+|.|.||.||...
T Consensus 275 IIDDr~dVW~~~~~nLI~i~~y~yF~~~ 302 (635)
T KOG0323|consen 275 IIDDRSDVWPDHKRNLIQIAPYPYFSGQ 302 (635)
T ss_pred EEeCccccccCCCcceEEeeeeecccCc
Confidence 9999999999988899999999999754
No 6
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.91 E-value=2.7e-24 Score=155.87 Aligned_cols=101 Identities=14% Similarity=0.241 Sum_probs=81.8
Q ss_pred ceeEEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCC-cccceEEeecCC--------CCC-ceeccCcC-
Q 041426 4 DKLVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSK-YFNSRIIAQEDF--------KVK-DRKNLDLV- 72 (109)
Q Consensus 4 ~~~v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~-~f~~r~~~r~~~--------~~~-~~KdL~~l- 72 (109)
..++.+|||+++||+.++++|||+|||||++.||+.+++.|++.+. -+.-+++..+|. .+. .+|||+.+
T Consensus 41 ~~~~~kRP~l~eFL~~~~~~feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~~lw 120 (195)
T TIGR02245 41 TGEELMRPYLHEFLTSAYEDYDIVIWSATSMKWIEIKMTELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLGVIW 120 (195)
T ss_pred CceEEeCCCHHHHHHHHHhCCEEEEEecCCHHHHHHHHHHhcccCCccceEEEEeccccceeeEeeccCcEEEeecHHhh
Confidence 4678999999999999999999999999999999999999976432 232333332331 112 58999977
Q ss_pred ---C--CCCCcEEEEcCCchhhccCCCCeEEeCcccc
Q 041426 73 ---L--SQERGTVILDDTESVWSDHTKNLKVVENMTT 104 (109)
Q Consensus 73 ---~--~~~~~viivDd~~~~~~~~~~N~i~i~~~~~ 104 (109)
+ .+++++|||||+|.++..||+|||+|+||..
T Consensus 121 ~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~I~~f~~ 157 (195)
T TIGR02245 121 ALLPEFYSMKNTIMFDDLRRNFLMNPQNGLKIRPFKK 157 (195)
T ss_pred hhcccCCCcccEEEEeCCHHHHhcCCCCccccCCccc
Confidence 2 3789999999999999999999999999964
No 7
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.85 E-value=1.1e-20 Score=130.72 Aligned_cols=105 Identities=30% Similarity=0.424 Sum_probs=93.3
Q ss_pred cceeEEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCC---CceeccCcCCCCCCcE
Q 041426 3 NDKLVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKV---KDRKNLDLVLSQERGT 79 (109)
Q Consensus 3 ~~~~v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~---~~~KdL~~l~~~~~~v 79 (109)
..+++++|||+.+||++|++.|++.|||++.++||+.+++.+++.+.+| .++++++++.. .+.|.|+.++.+++.+
T Consensus 40 ~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f-~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~ 118 (148)
T smart00577 40 HGVYVKKRPGVDEFLKRASELFELVVFTAGLRMYADPVLDLLDPKKYFG-YRRLFRDECVFVKGKYVKDLSLLGRDLSNV 118 (148)
T ss_pred EEEEEEECCCHHHHHHHHHhccEEEEEeCCcHHHHHHHHHHhCcCCCEe-eeEEECccccccCCeEeecHHHcCCChhcE
Confidence 3678999999999999999999999999999999999999999975444 55777776643 3789999999999999
Q ss_pred EEEcCCchhhccCCCCeEEeCcccccccC
Q 041426 80 VILDDTESVWSDHTKNLKVVENMTTLGTK 108 (109)
Q Consensus 80 iivDd~~~~~~~~~~N~i~i~~~~~~~~~ 108 (109)
|+|||++..|..++.|+|+|+||.++.+.
T Consensus 119 i~i~Ds~~~~~aa~~ngI~i~~f~~~~~d 147 (148)
T smart00577 119 IIIDDSPDSWPFHPENLIPIKPWFGDPDD 147 (148)
T ss_pred EEEECCHHHhhcCccCEEEecCcCCCCCC
Confidence 99999999999999999999999998764
No 8
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.83 E-value=1.1e-20 Score=146.39 Aligned_cols=104 Identities=15% Similarity=0.185 Sum_probs=92.5
Q ss_pred ceeEEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCC--CceeccCcCCCCCCcEEE
Q 041426 4 DKLVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKV--KDRKNLDLVLSQERGTVI 81 (109)
Q Consensus 4 ~~~v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~--~~~KdL~~l~~~~~~vii 81 (109)
..-+++|||++.||..++++|||+|||+....||.++++.|||+| +++.|+++..+... .++|||+.|+||+++||+
T Consensus 210 GwRf~kRPgvD~FL~~~a~~yEIVi~sse~gmt~~pl~d~lDP~g-~IsYkLfr~~t~y~~G~HvKdls~LNRdl~kViv 288 (393)
T KOG2832|consen 210 GWRFKKRPGVDYFLGHLAKYYEIVVYSSEQGMTVFPLLDALDPKG-YISYKLFRGATKYEEGHHVKDLSKLNRDLQKVIV 288 (393)
T ss_pred CceeccCchHHHHHHhhcccceEEEEecCCccchhhhHhhcCCcc-eEEEEEecCcccccCccchhhhhhhccccceeEE
Confidence 456789999999999999999999999999999999999999996 67788886443322 389999999999999999
Q ss_pred EcCCchhhccCCCCeEEeCcccccccC
Q 041426 82 LDDTESVWSDHTKNLKVVENMTTLGTK 108 (109)
Q Consensus 82 vDd~~~~~~~~~~N~i~i~~~~~~~~~ 108 (109)
||-++.+...||+|.|+++||.--+++
T Consensus 289 Vd~d~~~~~l~P~N~l~l~~W~Gn~dD 315 (393)
T KOG2832|consen 289 VDFDANSYKLQPENMLPLEPWSGNDDD 315 (393)
T ss_pred EEccccccccCcccccccCcCCCCccc
Confidence 999999999999999999999865554
No 9
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.78 E-value=1.3e-19 Score=142.34 Aligned_cols=102 Identities=22% Similarity=0.295 Sum_probs=95.3
Q ss_pred cceeEEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCC--CceeccCcCCCCCCcEE
Q 041426 3 NDKLVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKV--KDRKNLDLVLSQERGTV 80 (109)
Q Consensus 3 ~~~~v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~--~~~KdL~~l~~~~~~vi 80 (109)
..+||.+||++.+||..++++|++++||++.+.||++|++.||+.+ +|++|+++++|+.. .++|||..+++++..+|
T Consensus 247 ~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k-~~~~~lfr~sc~~~~G~~ikDis~i~r~l~~vi 325 (390)
T COG5190 247 HLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADPVLDILDSDK-VFSHRLFRESCVSYLGVYIKDISKIGRSLDKVI 325 (390)
T ss_pred eEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcchHHHhccccc-eeehhhhcccceeccCchhhhHHhhccCCCceE
Confidence 4689999999999999999999999999999999999999999997 89999998888754 37899999999999999
Q ss_pred EEcCCchhhccCCCCeEEeCccccc
Q 041426 81 ILDDTESVWSDHTKNLKVVENMTTL 105 (109)
Q Consensus 81 ivDd~~~~~~~~~~N~i~i~~~~~~ 105 (109)
|||++|.+|..||.|+|++++|..-
T Consensus 326 iId~~p~SY~~~p~~~i~i~~W~~d 350 (390)
T COG5190 326 IIDNSPASYEFHPENAIPIEKWISD 350 (390)
T ss_pred EeeCChhhhhhCccceeccCccccc
Confidence 9999999999999999999999764
No 10
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.16 E-value=1.9e-11 Score=96.49 Aligned_cols=107 Identities=29% Similarity=0.484 Sum_probs=92.3
Q ss_pred CcceeEEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCCceeccCcC-CCCCCcEE
Q 041426 2 DNDKLVKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDRKNLDLV-LSQERGTV 80 (109)
Q Consensus 2 ~~~~~v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~~~KdL~~l-~~~~~~vi 80 (109)
+..++++.||++..|+...++.||+.++|+|++.||..++.++||.|+.|+.|...++.......|.++.+ +.+-+.++
T Consensus 70 ~~~~~~k~~~~l~~~~~~i~~~~e~~~~~~~~~~~~~~~~~i~d~~g~~~~d~~~~~~~~~~~~~~s~~~l~p~~~n~~v 149 (390)
T COG5190 70 KCAYYVKARPKLFPFLTKISPLYELHIYTMGTRAYAERIAKIIDPTGKLFNDRILSRDESGSLSQKSLSRLFPKDQNMVV 149 (390)
T ss_pred cccceeeecccccchhhhhchhcceeeEeeccccchhhhhhcccccccccccccccccccccchhhhhhhcCcccccccc
Confidence 35689999999999999999999999999999999999999999999999999999888777678888876 57899999
Q ss_pred EEcCCchhhcc--CCCCeEEeCcccccccC
Q 041426 81 ILDDTESVWSD--HTKNLKVVENMTTLGTK 108 (109)
Q Consensus 81 ivDd~~~~~~~--~~~N~i~i~~~~~~~~~ 108 (109)
++||++++|.. --.|.+...++..+.++
T Consensus 150 i~~d~~~~~~~~d~~~~~v~~~~~~~~~~~ 179 (390)
T COG5190 150 IIDDRGDVWGVGDMNSNFVAKSPFSKYESD 179 (390)
T ss_pred ccccccccCCccchhhhhhccccccccccc
Confidence 99999999921 24777777775555443
No 11
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.73 E-value=8e-05 Score=50.23 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=62.9
Q ss_pred eeEEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCC
Q 041426 5 KLVKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQER 77 (109)
Q Consensus 5 ~~v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~ 77 (109)
......|++.++|+.++ +.+.+++.|++.+..+..+++.+... .+|.. +++.++.... +.+=++.++.+++
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~~-i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~ 151 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFDE-IISSDDVGSRKPDPDAYRRALEKLGIPPE 151 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCSE-EEEGGGSSSSTTSHHHHHHHHHHHTSSGG
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-ccccc-ccccchhhhhhhHHHHHHHHHHHcCCCcc
Confidence 35688999999999998 89999999999999999999987655 46654 5554444321 2233445577889
Q ss_pred cEEEEcCCchh
Q 041426 78 GTVILDDTESV 88 (109)
Q Consensus 78 ~viivDd~~~~ 88 (109)
.+++|||++.-
T Consensus 152 ~~~~vgD~~~d 162 (176)
T PF13419_consen 152 EILFVGDSPSD 162 (176)
T ss_dssp GEEEEESSHHH
T ss_pred eEEEEeCCHHH
Confidence 99999999843
No 12
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.68 E-value=7e-05 Score=53.57 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=60.6
Q ss_pred eEEECccHHHHHHHhhcC-ccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCc
Q 041426 6 LVKLRPFVRNFLKKASSM-FEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERG 78 (109)
Q Consensus 6 ~v~~RP~~~~FL~~l~~~-fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~ 78 (109)
.+.+.||+.++|+.|.+. +.+.|.|++...++...++.++-. .+|.. ++..++.... +.+=++.++.+.+.
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~f~~-i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 169 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVR-DFFDA-VITSEEEGVEKPHPKIFYAALKRLGVKPEE 169 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChH-HhccE-EEEeccCCCCCCCHHHHHHHHHHcCCChhh
Confidence 357899999999999765 999999999999999999888765 46754 5544444321 33445667778899
Q ss_pred EEEEcCCc
Q 041426 79 TVILDDTE 86 (109)
Q Consensus 79 viivDd~~ 86 (109)
+|+|+|++
T Consensus 170 ~~~igDs~ 177 (221)
T TIGR02253 170 AVMVGDRL 177 (221)
T ss_pred EEEECCCh
Confidence 99999997
No 13
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.52 E-value=0.00023 Score=50.69 Aligned_cols=78 Identities=15% Similarity=0.251 Sum_probs=60.1
Q ss_pred EEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcC-CCCCCcE
Q 041426 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLV-LSQERGT 79 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l-~~~~~~v 79 (109)
+..+||+.++|+.+.+.+.++|-|++....+..+++.+.-. .+|.. +++.++.... +.+=+..+ +.+++.+
T Consensus 96 ~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~-~~fd~-i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 173 (224)
T TIGR02254 96 HQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLF-PFFDD-IFVSEDAGIQKPDKEIFNYALERMPKFSKEEV 173 (224)
T ss_pred CeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcH-hhcCE-EEEcCccCCCCCCHHHHHHHHHHhcCCCchhe
Confidence 57899999999999877999999999999999999886555 35754 5554443321 23445667 7788999
Q ss_pred EEEcCCc
Q 041426 80 VILDDTE 86 (109)
Q Consensus 80 iivDd~~ 86 (109)
|+|+|++
T Consensus 174 v~igD~~ 180 (224)
T TIGR02254 174 LMIGDSL 180 (224)
T ss_pred EEECCCc
Confidence 9999986
No 14
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.47 E-value=0.00026 Score=48.79 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=54.6
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCC-C-----ceeccCcCCCCCCcE
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKV-K-----DRKNLDLVLSQERGT 79 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~-~-----~~KdL~~l~~~~~~v 79 (109)
+...||+.++|+.|++ .+.++|.|++.... ..+...++-. .+|..-+.+.+ ... + +.+=++.++.+++.+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~-~~f~~i~~~~~-~~~~KP~~~~~~~~~~~~~~~~~~~ 160 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLR-DLFDVVIFSGD-VGRGKPDPDIYLLALKKLGLKPEEC 160 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCH-HHCCEEEEcCC-CCCCCCCHHHHHHHHHHcCCCcceE
Confidence 5778999999999975 68999999999999 6666555554 35654333322 221 1 222344567788999
Q ss_pred EEEcCCch
Q 041426 80 VILDDTES 87 (109)
Q Consensus 80 iivDd~~~ 87 (109)
++|||++.
T Consensus 161 ~~vgD~~~ 168 (183)
T TIGR01509 161 LFVDDSPA 168 (183)
T ss_pred EEEcCCHH
Confidence 99999984
No 15
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.44 E-value=0.00027 Score=50.15 Aligned_cols=82 Identities=15% Similarity=0.128 Sum_probs=61.2
Q ss_pred eEEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCc
Q 041426 6 LVKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERG 78 (109)
Q Consensus 6 ~v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~ 78 (109)
.+...||+.++|+.|.+ .+.+.|.|++.+.++..+++.++-.+ +|.. +++.++.... +.+=++.++.+++.
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~-~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~ 160 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YFSV-LIGGDSLAQRKPHPDPLLLAAERLGVAPQQ 160 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hCcE-EEecCCCCCCCCChHHHHHHHHHcCCChhH
Confidence 35789999999999974 59999999999999999999876553 5643 5554443221 23335566778899
Q ss_pred EEEEcCCchhh
Q 041426 79 TVILDDTESVW 89 (109)
Q Consensus 79 viivDd~~~~~ 89 (109)
+++|+|++.-.
T Consensus 161 ~~~igDs~~d~ 171 (213)
T TIGR01449 161 MVYVGDSRVDI 171 (213)
T ss_pred eEEeCCCHHHH
Confidence 99999998544
No 16
>PRK09449 dUMP phosphatase; Provisional
Probab=97.37 E-value=0.00043 Score=49.75 Aligned_cols=78 Identities=14% Similarity=0.154 Sum_probs=58.2
Q ss_pred EEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCC-CCCcE
Q 041426 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLS-QERGT 79 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~-~~~~v 79 (109)
+...||+.++|+.|.+.+.+.|.||+.+..+..+++.+.-. .+|.. ++..++.... +.+-++.++. +.+.+
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~-~~fd~-v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~ 171 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLR-DYFDL-LVISEQVGVAKPDVAIFDYALEQMGNPDRSRV 171 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChH-HHcCE-EEEECccCCCCCCHHHHHHHHHHcCCCCcccE
Confidence 45789999999999988999999999999999998876655 35754 5544443221 2334556664 45789
Q ss_pred EEEcCCc
Q 041426 80 VILDDTE 86 (109)
Q Consensus 80 iivDd~~ 86 (109)
++|+|++
T Consensus 172 ~~vgD~~ 178 (224)
T PRK09449 172 LMVGDNL 178 (224)
T ss_pred EEEcCCc
Confidence 9999996
No 17
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.36 E-value=0.00029 Score=49.75 Aligned_cols=78 Identities=10% Similarity=0.150 Sum_probs=58.1
Q ss_pred EECccHHHHHHHhhcC-ccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCcEE
Q 041426 8 KLRPFVRNFLKKASSM-FEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERGTV 80 (109)
Q Consensus 8 ~~RP~~~~FL~~l~~~-fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~vi 80 (109)
...||+.++|+.|++. +.++|.|++...++..+++.+.-. .+|.. +++.++.... +.+=++.++.+++.++
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~-~~fd~-i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~ 169 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD-DPFDA-VLSADAVRAYKPAPQVYQLALEALGVPPDEVL 169 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh-hhhhe-eEehhhcCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 4679999999999886 999999999999999999877543 35654 5554443221 2233445677899999
Q ss_pred EEcCCch
Q 041426 81 ILDDTES 87 (109)
Q Consensus 81 ivDd~~~ 87 (109)
+|+|++.
T Consensus 170 ~vgD~~~ 176 (198)
T TIGR01428 170 FVASNPW 176 (198)
T ss_pred EEeCCHH
Confidence 9999983
No 18
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.29 E-value=0.00049 Score=50.87 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=60.7
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCcE
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERGT 79 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~v 79 (109)
+...||+.++|+.|. +.+.+.|-|++.+.++..+++.++-. .+|.. ++..++.... +.+=+..++.+++.+
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~-~~Fd~-iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 184 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLS-DFFQA-VIIGSECEHAKPHPDPYLKALEVLKVSKDHT 184 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCh-hhCcE-EEecCcCCCCCCChHHHHHHHHHhCCChhHE
Confidence 456899999999995 56999999999999999999998766 46754 5544443221 334455667788999
Q ss_pred EEEcCCch
Q 041426 80 VILDDTES 87 (109)
Q Consensus 80 iivDd~~~ 87 (109)
++|+|++.
T Consensus 185 l~vgDs~~ 192 (248)
T PLN02770 185 FVFEDSVS 192 (248)
T ss_pred EEEcCCHH
Confidence 99999984
No 19
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.27 E-value=0.00041 Score=49.56 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=62.4
Q ss_pred eEEECccHHHHHHHhh-cCccEEEEeCC-chhhHHHHHHHhcCC--C------CcccceEEeecCCCCCc----eeccCc
Q 041426 6 LVKLRPFVRNFLKKAS-SMFEMYVCTMG-TQCYATAAVKVLDSN--S------KYFNSRIIAQEDFKVKD----RKNLDL 71 (109)
Q Consensus 6 ~v~~RP~~~~FL~~l~-~~fei~i~T~~-~~~YA~~i~~~lDp~--~------~~f~~r~~~r~~~~~~~----~KdL~~ 71 (109)
-+.++||+.++|+.|. +.+.+.|-|++ ...++..+++.++-. + .+|...+.+........ .+.+..
T Consensus 43 ~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~ 122 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNK 122 (174)
T ss_pred EEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhh
Confidence 4678999999999996 56999999988 999999999988743 2 45655444433111111 122222
Q ss_pred C---CCCCCcEEEEcCCchhhccCCCCeEE
Q 041426 72 V---LSQERGTVILDDTESVWSDHTKNLKV 98 (109)
Q Consensus 72 l---~~~~~~viivDd~~~~~~~~~~N~i~ 98 (109)
. +-+++.+++|||++.-...-..+++.
T Consensus 123 ~~~~gl~p~e~l~VgDs~~di~aA~~aGi~ 152 (174)
T TIGR01685 123 VDPSVLKPAQILFFDDRTDNVREVWGYGVT 152 (174)
T ss_pred cccCCCCHHHeEEEcChhHhHHHHHHhCCE
Confidence 2 36789999999999655432234443
No 20
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.24 E-value=0.00052 Score=51.53 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=61.3
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCC-C-----ceeccCcCCCCCCcE
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKV-K-----DRKNLDLVLSQERGT 79 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~-~-----~~KdL~~l~~~~~~v 79 (109)
+...||+.++|+.|.+ .+.+.|-|++++.++..+++.++-. .+|.. +++.++... + +.+=+.+++.+++.+
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~-~~Fd~-ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~ 185 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGME-GFFSV-VLAAEDVYRGKPDPEMFMYAAERLGFIPERC 185 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCH-hhCcE-EEecccCCCCCCCHHHHHHHHHHhCCChHHe
Confidence 5678999999999975 5999999999999999999987654 36755 554444422 1 334456677888999
Q ss_pred EEEcCCchhh
Q 041426 80 VILDDTESVW 89 (109)
Q Consensus 80 iivDd~~~~~ 89 (109)
++|+|++.-.
T Consensus 186 l~IgDs~~Di 195 (260)
T PLN03243 186 IVFGNSNSSV 195 (260)
T ss_pred EEEcCCHHHH
Confidence 9999997433
No 21
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.22 E-value=0.00052 Score=50.09 Aligned_cols=81 Identities=12% Similarity=0.097 Sum_probs=59.8
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCcE
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERGT 79 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~v 79 (109)
+...||+.++|+.|.+ .+.+.|-|++.+.++...++.+.-. .+|.. +++.++.... +.+=+++++.+++.+
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~fd~-iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~ 169 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLD-AHLDL-LLSTHTFGYPKEDQRLWQAVAEHTGLKAERT 169 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcH-HHCCE-EEEeeeCCCCCCCHHHHHHHHHHcCCChHHE
Confidence 4678999999999975 5899999999999999998876544 45765 4443333221 233345677889999
Q ss_pred EEEcCCchhh
Q 041426 80 VILDDTESVW 89 (109)
Q Consensus 80 iivDd~~~~~ 89 (109)
++|+|++.-.
T Consensus 170 l~igDs~~di 179 (224)
T PRK14988 170 LFIDDSEPIL 179 (224)
T ss_pred EEEcCCHHHH
Confidence 9999998544
No 22
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.22 E-value=0.00051 Score=48.07 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=57.0
Q ss_pred EEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCC-----C-----ceeccCcCCCCC
Q 041426 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKV-----K-----DRKNLDLVLSQE 76 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~-----~-----~~KdL~~l~~~~ 76 (109)
++..||+.++|++|. +.++|.|++.+..+..+++.++-. .+|.. +++.++... + +.+=++.++.++
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~-~~fd~-i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~ 158 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIE-DCFDG-IFCFDTANPDYLLPKPSPQAYEKALREAGVDP 158 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcH-hhhCe-EEEeecccCccCCCCCCHHHHHHHHHHhCCCc
Confidence 346799999999998 689999999999999999987654 36755 554443321 1 223345567789
Q ss_pred CcEEEEcCCch
Q 041426 77 RGTVILDDTES 87 (109)
Q Consensus 77 ~~viivDd~~~ 87 (109)
+.+++|+|++.
T Consensus 159 ~~~l~vgD~~~ 169 (184)
T TIGR01993 159 ERAIFFDDSAR 169 (184)
T ss_pred cceEEEeCCHH
Confidence 99999999974
No 23
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.21 E-value=0.00078 Score=48.21 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=60.5
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCcE
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERGT 79 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~v 79 (109)
+...||+.++|+.|.+ .+.+.|.|++.+.++..+++.++-. .+|.. +++.+++... +.+=++.++.+++++
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~-~~f~~-i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~ 158 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLD-EFFDV-VITLDDVEHAKPDPEPVLKALELLGAKPEEA 158 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh-hceeE-EEecCcCCCCCCCcHHHHHHHHHcCCCHHHE
Confidence 5678999999999974 6899999999999999999988765 46754 5554433221 233344566778999
Q ss_pred EEEcCCchhh
Q 041426 80 VILDDTESVW 89 (109)
Q Consensus 80 iivDd~~~~~ 89 (109)
++|+|++.-.
T Consensus 159 ~~iGDs~~Di 168 (214)
T PRK13288 159 LMVGDNHHDI 168 (214)
T ss_pred EEECCCHHHH
Confidence 9999998544
No 24
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.20 E-value=0.00078 Score=49.52 Aligned_cols=80 Identities=14% Similarity=-0.020 Sum_probs=59.7
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCC-CCCc
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLS-QERG 78 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~-~~~~ 78 (109)
+...||+.++|+.|.+ .+.+.|-|++++..+..+++.+.-.+ +|...+++.++.... +.+=+..++. +++.
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~ 176 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG-YRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAA 176 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC-CCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchh
Confidence 4678999999999965 59999999999999999999877664 433456665544221 3344456666 4889
Q ss_pred EEEEcCCch
Q 041426 79 TVILDDTES 87 (109)
Q Consensus 79 viivDd~~~ 87 (109)
+|+|.|++.
T Consensus 177 ~l~IGDs~~ 185 (253)
T TIGR01422 177 CVKVGDTVP 185 (253)
T ss_pred eEEECCcHH
Confidence 999999984
No 25
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=97.18 E-value=0.00035 Score=50.19 Aligned_cols=81 Identities=11% Similarity=0.120 Sum_probs=58.9
Q ss_pred EEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCcEE
Q 041426 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERGTV 80 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~vi 80 (109)
+...||+.++|+.|. +.+.|.|++++.+++.+++..+-. .+|...+++.++.... +..=+..++.+++.+|
T Consensus 87 ~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~-~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 163 (221)
T PRK10563 87 LEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGML-HYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCI 163 (221)
T ss_pred CCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChH-HhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 456799999999994 899999999999999998876555 3564445654433221 2233445677889999
Q ss_pred EEcCCchhhc
Q 041426 81 ILDDTESVWS 90 (109)
Q Consensus 81 ivDd~~~~~~ 90 (109)
+|+|++.-..
T Consensus 164 ~igDs~~di~ 173 (221)
T PRK10563 164 LVDDSSAGAQ 173 (221)
T ss_pred EEeCcHhhHH
Confidence 9999985443
No 26
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.17 E-value=0.00098 Score=47.60 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=60.5
Q ss_pred EEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCC-C-----ceeccCcCCCCCCcEE
Q 041426 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKV-K-----DRKNLDLVLSQERGTV 80 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~-~-----~~KdL~~l~~~~~~vi 80 (109)
+..-|++.++|+++...|.++|.|||...++...+..+- -..+|.. ++..++.+. + +..=++.++.+++.++
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~g-l~~~Fd~-v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l 175 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLG-LLDYFDA-VFISEDVGVAKPDPEIFEYALEKLGVPPEEAL 175 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcC-Chhhhhe-EEEecccccCCCCcHHHHHHHHHcCCCcceEE
Confidence 456788999999998889999999999999999998876 3356766 444344432 1 3334556777899999
Q ss_pred EEcCCchh
Q 041426 81 ILDDTESV 88 (109)
Q Consensus 81 ivDd~~~~ 88 (109)
+|||+...
T Consensus 176 ~VgD~~~~ 183 (229)
T COG1011 176 FVGDSLEN 183 (229)
T ss_pred EECCChhh
Confidence 99998743
No 27
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.15 E-value=0.00092 Score=47.52 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=59.6
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCcE
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERGT 79 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~v 79 (109)
+...||+.++|+.|. ..+.+.|.|++.+.++..+++.++-.+ +|.. +++.++.... +.+=++.++.+.+++
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f~~-i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 151 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LFDH-VIGSDEVPRPKPAPDIVREALRLLDVPPEDA 151 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-heee-EEecCcCCCCCCChHHHHHHHHHcCCChhhe
Confidence 567899999999996 569999999999999999999887763 5654 5544433211 222234466778999
Q ss_pred EEEcCCchhh
Q 041426 80 VILDDTESVW 89 (109)
Q Consensus 80 iivDd~~~~~ 89 (109)
++|+|++.-.
T Consensus 152 l~igD~~~Di 161 (205)
T TIGR01454 152 VMVGDAVTDL 161 (205)
T ss_pred EEEcCCHHHH
Confidence 9999997433
No 28
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.13 E-value=0.0011 Score=47.28 Aligned_cols=79 Identities=15% Similarity=0.210 Sum_probs=58.7
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCcE
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERGT 79 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~v 79 (109)
...+||+.++|+.+.+ .+.++|.|++...++..+++.++-. .+|. .+++.++.... +.+=++.++.+.+.+
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 169 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIA-DYFS-VVIGGDSLPNKKPDPAPLLLACEKLGLDPEEM 169 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCc-cCcc-EEEcCCCCCCCCcChHHHHHHHHHcCCChhhe
Confidence 5689999999999974 6899999999999999999987655 3554 35554443211 122334566788999
Q ss_pred EEEcCCch
Q 041426 80 VILDDTES 87 (109)
Q Consensus 80 iivDd~~~ 87 (109)
++|+|++.
T Consensus 170 i~igD~~~ 177 (226)
T PRK13222 170 LFVGDSRN 177 (226)
T ss_pred EEECCCHH
Confidence 99999974
No 29
>PRK11587 putative phosphatase; Provisional
Probab=96.95 E-value=0.0021 Score=46.27 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=56.2
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCC------CceeccCcCCCCCCcE
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKV------KDRKNLDLVLSQERGT 79 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~------~~~KdL~~l~~~~~~v 79 (109)
+...||+.++|+.|. +.+.+.|-|+++...+..+++...-. .|. -+++.++... .+.+-+..++..++.+
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~--~~~-~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~ 158 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP--APE-VFVTAERVKRGKPEPDAYLLGAQLLGLAPQEC 158 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC--Ccc-EEEEHHHhcCCCCCcHHHHHHHHHcCCCcccE
Confidence 568899999999996 56999999999999887777654432 232 3555443321 1344455677789999
Q ss_pred EEEcCCch
Q 041426 80 VILDDTES 87 (109)
Q Consensus 80 iivDd~~~ 87 (109)
|+|+|++.
T Consensus 159 l~igDs~~ 166 (218)
T PRK11587 159 VVVEDAPA 166 (218)
T ss_pred EEEecchh
Confidence 99999984
No 30
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=96.93 E-value=0.0016 Score=41.74 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=35.5
Q ss_pred EEECccHHHHHHHhhcC-ccEEEEeCCchhhHHHHHHHhcC
Q 041426 7 VKLRPFVRNFLKKASSM-FEMYVCTMGTQCYATAAVKVLDS 46 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~~-fei~i~T~~~~~YA~~i~~~lDp 46 (109)
...+|++.++|+.+.+. +.++|.|++.+..+..+++.+.-
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGL 63 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCC
Confidence 46789999999999875 99999999999999999987654
No 31
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=96.90 E-value=0.001 Score=47.27 Aligned_cols=83 Identities=17% Similarity=0.114 Sum_probs=56.1
Q ss_pred eEEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCc
Q 041426 6 LVKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERG 78 (109)
Q Consensus 6 ~v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~ 78 (109)
+....||+.++|+.+.+ .+.++|-|++.+..+..++....--..+|.. +++.++.... +..=++.++.+++.
T Consensus 82 ~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~-v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~ 160 (199)
T PRK09456 82 FVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADH-IYLSQDLGMRKPEARIYQHVLQAEGFSAAD 160 (199)
T ss_pred HhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCE-EEEecccCCCCCCHHHHHHHHHHcCCChhH
Confidence 34578999999999974 6999999999988766544321111234644 5554444321 33445667889999
Q ss_pred EEEEcCCchhh
Q 041426 79 TVILDDTESVW 89 (109)
Q Consensus 79 viivDd~~~~~ 89 (109)
+++|||++.-.
T Consensus 161 ~l~vgD~~~di 171 (199)
T PRK09456 161 AVFFDDNADNI 171 (199)
T ss_pred eEEeCCCHHHH
Confidence 99999998543
No 32
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=96.87 E-value=0.0026 Score=46.35 Aligned_cols=82 Identities=12% Similarity=0.020 Sum_probs=59.4
Q ss_pred eEEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCc
Q 041426 6 LVKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERG 78 (109)
Q Consensus 6 ~v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~ 78 (109)
.+...||+.++|+.|.+ .+.+.|.|++...++..+++.++-. .+|. .+++.++.... +.+=++.++.+++.
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~-~~f~-~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~ 170 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWE-QRCA-VLIGGDTLAERKPHPLPLLVAAERIGVAPTD 170 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCch-hccc-EEEecCcCCCCCCCHHHHHHHHHHhCCChhh
Confidence 35789999999999975 4789999999999999998887654 2453 34444433221 23344566778999
Q ss_pred EEEEcCCchhh
Q 041426 79 TVILDDTESVW 89 (109)
Q Consensus 79 viivDd~~~~~ 89 (109)
+++|+|++.-.
T Consensus 171 ~l~IGDs~~Di 181 (229)
T PRK13226 171 CVYVGDDERDI 181 (229)
T ss_pred EEEeCCCHHHH
Confidence 99999998433
No 33
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.87 E-value=0.00085 Score=45.09 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=54.9
Q ss_pred ECccHHHHHHHhh-cCccEEEEeCC-chhhHHHHHHHhcCC------CCcccceEEeecCCCC--CceeccCcCC--CCC
Q 041426 9 LRPFVRNFLKKAS-SMFEMYVCTMG-TQCYATAAVKVLDSN------SKYFNSRIIAQEDFKV--KDRKNLDLVL--SQE 76 (109)
Q Consensus 9 ~RP~~~~FL~~l~-~~fei~i~T~~-~~~YA~~i~~~lDp~------~~~f~~r~~~r~~~~~--~~~KdL~~l~--~~~ 76 (109)
..||+.++|+.|. ..+.+.|.|++ .+.++..+++...+. ..+|...+.+ ++... ...+=+..++ .++
T Consensus 30 ~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~-~~~pkp~~~~~a~~~lg~~~~p 108 (128)
T TIGR01681 30 TIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIG-YWLPKSPRLVEIALKLNGVLKP 108 (128)
T ss_pred HHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhc-CCCcHHHHHHHHHHHhcCCCCc
Confidence 5789999999996 57999999999 899999999877621 1234332222 12111 1233345567 789
Q ss_pred CcEEEEcCCchh
Q 041426 77 RGTVILDDTESV 88 (109)
Q Consensus 77 ~~viivDd~~~~ 88 (109)
+.+++|||++..
T Consensus 109 ~~~l~igDs~~n 120 (128)
T TIGR01681 109 KSILFVDDRPDN 120 (128)
T ss_pred ceEEEECCCHhH
Confidence 999999999743
No 34
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=96.80 E-value=0.0029 Score=45.26 Aligned_cols=80 Identities=13% Similarity=0.069 Sum_probs=59.0
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCC-CcccceEEeecCCCCC------ceeccCcCCCC-CC
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNS-KYFNSRIIAQEDFKVK------DRKNLDLVLSQ-ER 77 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~-~~f~~r~~~r~~~~~~------~~KdL~~l~~~-~~ 77 (109)
..+.||+.++|+.|. +.+.+.|-|++.+.++..+++.++-.. .+|.. +++.++.... +.+=+.+++.. ++
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~-i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 164 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDA-VVCPSDVAAGRPAPDLILRAMELTGVQDVQ 164 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCE-EEcCCcCCCCCCCHHHHHHHHHHcCCCChh
Confidence 468899999999996 679999999999999999999876542 56754 5554443221 22234455654 68
Q ss_pred cEEEEcCCch
Q 041426 78 GTVILDDTES 87 (109)
Q Consensus 78 ~viivDd~~~ 87 (109)
.+++|+|++.
T Consensus 165 ~~~~igD~~~ 174 (220)
T TIGR03351 165 SVAVAGDTPN 174 (220)
T ss_pred HeEEeCCCHH
Confidence 9999999974
No 35
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=96.80 E-value=0.0032 Score=45.39 Aligned_cols=50 Identities=12% Similarity=0.218 Sum_probs=41.1
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCCCcccceEE
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRII 56 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~ 56 (109)
+.+|||+.+||+.+.+ ...++|.|++...|+..+++.+.+...++.++..
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~ 119 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEAD 119 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeE
Confidence 6799999999999976 5899999999999999999987654445554443
No 36
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=96.80 E-value=0.004 Score=45.00 Aligned_cols=38 Identities=16% Similarity=0.303 Sum_probs=34.7
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHh
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVL 44 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~l 44 (109)
+.++||+.+||+.+. .-+.++|.|++...|+..+++.+
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 578999999999996 56999999999999999999876
No 37
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=96.80 E-value=0.0022 Score=44.87 Aligned_cols=79 Identities=14% Similarity=0.237 Sum_probs=56.2
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCC---Cc------ee-----c-cC
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKV---KD------RK-----N-LD 70 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~---~~------~K-----d-L~ 70 (109)
+.++||+.++|+.+. +-+.++|.|++...++..+++.+... .+|.+.+.+.+.... .. .| . +.
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~ 157 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD-YVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR 157 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC-eEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence 457999999999996 56999999999999999999988755 456555554321110 00 01 1 22
Q ss_pred cCCCCCCcEEEEcCCc
Q 041426 71 LVLSQERGTVILDDTE 86 (109)
Q Consensus 71 ~l~~~~~~viivDd~~ 86 (109)
.++.+++.+++|.|+.
T Consensus 158 ~~~~~~~~~i~iGDs~ 173 (201)
T TIGR01491 158 ELNPSLTETVAVGDSK 173 (201)
T ss_pred HhCCCHHHEEEEcCCH
Confidence 3456788999999997
No 38
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=96.78 E-value=0.00099 Score=46.44 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=57.6
Q ss_pred ECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCcEEEE
Q 041426 9 LRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERGTVIL 82 (109)
Q Consensus 9 ~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~viiv 82 (109)
.-|+ .+.|+.+.+.+.+.|-|++++.++..+++.+.-. .+|.. +++.++.... +..-+++++.+++.+|+|
T Consensus 89 ~~~~-~e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~-~~fd~-i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~i 165 (188)
T PRK10725 89 PLPL-IEVVKAWHGRRPMAVGTGSESAIAEALLAHLGLR-RYFDA-VVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVF 165 (188)
T ss_pred CccH-HHHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcH-hHceE-EEehhhccCCCCChHHHHHHHHHcCCCHHHeEEE
Confidence 4466 4889999877899999999999999999987655 46754 6665554321 233345567788999999
Q ss_pred cCCchhhc
Q 041426 83 DDTESVWS 90 (109)
Q Consensus 83 Dd~~~~~~ 90 (109)
+|++.-..
T Consensus 166 gDs~~di~ 173 (188)
T PRK10725 166 EDADFGIQ 173 (188)
T ss_pred eccHhhHH
Confidence 99975443
No 39
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.73 E-value=0.004 Score=44.01 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=53.2
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCcE
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERGT 79 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~v 79 (109)
+..-||+.++|+.|++ .+.+.|.|++.... ..+++.+.-. .+|.. ++..++.... +.+=++.++.+++.+
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~-~~fd~-i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~ 180 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLL-EYFDF-VVTSYEVGAEKPDPKIFQEALERAGISPEEA 180 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcH-Hhcce-EEeecccCCCCCCHHHHHHHHHHcCCChhHE
Confidence 3678999999999986 48999999998764 6666665433 35654 4443333221 233345567789999
Q ss_pred EEEcCCc
Q 041426 80 VILDDTE 86 (109)
Q Consensus 80 iivDd~~ 86 (109)
|+|+|++
T Consensus 181 ~~IgD~~ 187 (203)
T TIGR02252 181 LHIGDSL 187 (203)
T ss_pred EEECCCc
Confidence 9999986
No 40
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=96.65 E-value=0.0051 Score=43.52 Aligned_cols=76 Identities=16% Similarity=-0.012 Sum_probs=55.7
Q ss_pred ECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC-----ceeccCcCCCCCCcEEEE
Q 041426 9 LRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK-----DRKNLDLVLSQERGTVIL 82 (109)
Q Consensus 9 ~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~-----~~KdL~~l~~~~~~viiv 82 (109)
..|+..++|+.|.+ -+.+.|.|++.+.++..+++.+.-. .+|.. +++.++...+ +.+-++.++.+.+.+|+|
T Consensus 107 ~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~-~~f~~-~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~v 184 (197)
T TIGR01548 107 TLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLE-ILFPV-QIWMEDCPPKPNPEPLILAAKALGVEACHAAMV 184 (197)
T ss_pred cccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCch-hhCCE-EEeecCCCCCcCHHHHHHHHHHhCcCcccEEEE
Confidence 45566999999975 5999999999999999999987655 46754 4544443211 223345567788899999
Q ss_pred cCCc
Q 041426 83 DDTE 86 (109)
Q Consensus 83 Dd~~ 86 (109)
+|++
T Consensus 185 GD~~ 188 (197)
T TIGR01548 185 GDTV 188 (197)
T ss_pred eCCH
Confidence 9987
No 41
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=96.64 E-value=0.0029 Score=45.52 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=60.1
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCcE
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERGT 79 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~v 79 (109)
+...||+.++|+.+. +.+.++|.|++.+..+..+++.+.-. .+|.. +++.+..... +..=++.++.+++++
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~~-~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~ 168 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLR-DYFDA-LASAEKLPYSKPHPEVYLNCAAKLGVDPLTC 168 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcch-hcccE-EEEcccCCCCCCCHHHHHHHHHHcCCCHHHe
Confidence 356799999999997 56999999999999999999987655 35654 5554443221 223345567788999
Q ss_pred EEEcCCchhh
Q 041426 80 VILDDTESVW 89 (109)
Q Consensus 80 iivDd~~~~~ 89 (109)
++|+|++.-.
T Consensus 169 ~~igDs~~Di 178 (222)
T PRK10826 169 VALEDSFNGM 178 (222)
T ss_pred EEEcCChhhH
Confidence 9999998544
No 42
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.59 E-value=0.0023 Score=44.33 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=54.5
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCcE
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERGT 79 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~v 79 (109)
+...||+.++|+.|.+ .+.+.|-|++ .++..+++.+.-. .+|.. ++..++.... +.+=++.++.+++.+
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~-~~f~~-v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 162 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLT-DYFDA-IVDADEVKEGKPHPETFLLAAELLGVSPNEC 162 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChH-HHCCE-eeehhhCCCCCCChHHHHHHHHHcCCCHHHe
Confidence 5688999999999975 5889999988 7788888876544 35654 4433332211 223344567788999
Q ss_pred EEEcCCchhh
Q 041426 80 VILDDTESVW 89 (109)
Q Consensus 80 iivDd~~~~~ 89 (109)
|+|+|++.-.
T Consensus 163 v~IgD~~~di 172 (185)
T TIGR02009 163 VVFEDALAGV 172 (185)
T ss_pred EEEeCcHhhH
Confidence 9999997433
No 43
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=96.58 E-value=0.0045 Score=49.30 Aligned_cols=81 Identities=14% Similarity=0.141 Sum_probs=62.0
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCcE
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERGT 79 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~v 79 (109)
+...||+.+||+.|. ..+.+.|-|++.+.++..+++.+.-. .+|.. +++.++.... +.+-+..++.+++.+
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~-~yFd~-Iv~sddv~~~KP~Peifl~A~~~lgl~Peec 292 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIR-GFFSV-IVAAEDVYRGKPDPEMFIYAAQLLNFIPERC 292 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCH-HHceE-EEecCcCCCCCCCHHHHHHHHHHcCCCcccE
Confidence 356799999999996 56999999999999999999988655 46754 6655554321 334456678889999
Q ss_pred EEEcCCchhh
Q 041426 80 VILDDTESVW 89 (109)
Q Consensus 80 iivDd~~~~~ 89 (109)
|+|+|++.-.
T Consensus 293 l~IGDS~~DI 302 (381)
T PLN02575 293 IVFGNSNQTV 302 (381)
T ss_pred EEEcCCHHHH
Confidence 9999987543
No 44
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=96.58 E-value=0.0045 Score=46.52 Aligned_cols=80 Identities=19% Similarity=0.209 Sum_probs=58.3
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCcE
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERGT 79 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~v 79 (109)
+..+||+.++|+.|. +.+.++|.|+++..++..+++.++-. .+|. .+++.++.... +.+=+..++.+++.+
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~-~~f~-~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~ 177 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIG-RYFR-WIIGGDTLPQKKPDPAALLFVMKMAGVPPSQS 177 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcH-hhCe-EEEecCCCCCCCCCcHHHHHHHHHhCCChhHE
Confidence 457899999999996 46999999999999999999876554 3564 35655543321 112233456788999
Q ss_pred EEEcCCchh
Q 041426 80 VILDDTESV 88 (109)
Q Consensus 80 iivDd~~~~ 88 (109)
++|+|++.-
T Consensus 178 l~IGD~~~D 186 (272)
T PRK13223 178 LFVGDSRSD 186 (272)
T ss_pred EEECCCHHH
Confidence 999999743
No 45
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=96.58 E-value=0.0028 Score=45.29 Aligned_cols=82 Identities=16% Similarity=0.104 Sum_probs=56.2
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecC-----------CCC-C---ceeccC
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQED-----------FKV-K---DRKNLD 70 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~-----------~~~-~---~~KdL~ 70 (109)
+..+||+.++|+.+.+ .+.++|.|++...++..+++.+.-.. +|.+.+...+. ... . ..+=++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 162 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLR 162 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHH
Confidence 3579999999999976 69999999999999999999876553 56544332110 000 0 111123
Q ss_pred cCCCCCCcEEEEcCCchhh
Q 041426 71 LVLSQERGTVILDDTESVW 89 (109)
Q Consensus 71 ~l~~~~~~viivDd~~~~~ 89 (109)
.++.+++.+++|+|++.-.
T Consensus 163 ~~~~~~~~~i~iGDs~~Di 181 (219)
T TIGR00338 163 KEGISPENTVAVGDGANDL 181 (219)
T ss_pred HcCCCHHHEEEEECCHHHH
Confidence 4466788999999987433
No 46
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=96.57 E-value=0.0019 Score=47.18 Aligned_cols=80 Identities=15% Similarity=0.149 Sum_probs=62.9
Q ss_pred EEECccHHHHHHHhhcC-ccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCC-----CceeccCcCCCCCCcEE
Q 041426 7 VKLRPFVRNFLKKASSM-FEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKV-----KDRKNLDLVLSQERGTV 80 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~~-fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~-----~~~KdL~~l~~~~~~vi 80 (109)
++..||+.+||++|... .-+.+-|++.+.-+..+++.+.-. .+|...+.+.+.... .+.+-..+|+.++++.|
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~-~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cv 163 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLL-DYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECV 163 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccCh-hhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeE
Confidence 46789999999999877 999999999999999999887666 357665554333222 15666777889999999
Q ss_pred EEcCCch
Q 041426 81 ILDDTES 87 (109)
Q Consensus 81 ivDd~~~ 87 (109)
+|+|++.
T Consensus 164 viEDs~~ 170 (221)
T COG0637 164 VVEDSPA 170 (221)
T ss_pred EEecchh
Confidence 9999984
No 47
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=96.57 E-value=0.0046 Score=46.90 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=56.8
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccc-eEEeecCCCCC------ceeccCcCCCCCCc
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNS-RIIAQEDFKVK------DRKNLDLVLSQERG 78 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~-r~~~r~~~~~~------~~KdL~~l~~~~~~ 78 (109)
+.+.||+.++|+.|. +.+.+.|-|++++.++..+++.+.-. .+|.. .++..+++... +.+=++.++.+++.
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~-~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 221 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGP-ERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSR 221 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccc-cccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHH
Confidence 578999999999996 46999999999999999998865211 12221 12333333221 22234556778899
Q ss_pred EEEEcCCchhhc
Q 041426 79 TVILDDTESVWS 90 (109)
Q Consensus 79 viivDd~~~~~~ 90 (109)
+|+|+|++.-..
T Consensus 222 ~l~IGDs~~Di~ 233 (286)
T PLN02779 222 CVVVEDSVIGLQ 233 (286)
T ss_pred EEEEeCCHHhHH
Confidence 999999985443
No 48
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=96.56 E-value=0.0076 Score=40.67 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=53.2
Q ss_pred EECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC-----ceeccCcCCCCCCcEEE
Q 041426 8 KLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK-----DRKNLDLVLSQERGTVI 81 (109)
Q Consensus 8 ~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~-----~~KdL~~l~~~~~~vii 81 (109)
...||+.++|+.|. +.+.+.|.|++.+..+..+++.+ - ..+|. .++..++...+ +.+=++.++.+. .+++
T Consensus 64 ~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l-~~~f~-~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~l~ 139 (154)
T TIGR01549 64 AYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-L-GDYFD-LILGSDEFGAKPEPEIFLAALESLGLPP-EVLH 139 (154)
T ss_pred eeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-H-HhcCc-EEEecCCCCCCcCHHHHHHHHHHcCCCC-CEEE
Confidence 34599999999995 56899999999999999999874 1 23453 35554544321 222244556666 8999
Q ss_pred EcCCc
Q 041426 82 LDDTE 86 (109)
Q Consensus 82 vDd~~ 86 (109)
|+|++
T Consensus 140 iGDs~ 144 (154)
T TIGR01549 140 VGDNL 144 (154)
T ss_pred EeCCH
Confidence 99996
No 49
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=96.55 E-value=0.0052 Score=47.01 Aligned_cols=94 Identities=13% Similarity=0.188 Sum_probs=63.1
Q ss_pred eEEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHh---cCCCCcccceEEee-cCCCCC--------ceec--c-
Q 041426 6 LVKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVL---DSNSKYFNSRIIAQ-EDFKVK--------DRKN--L- 69 (109)
Q Consensus 6 ~v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~l---Dp~~~~f~~r~~~r-~~~~~~--------~~Kd--L- 69 (109)
-+.+|||+.+|++.|. ....+.|+|+|...++..+++.+ +++..++++++.-. ++...+ .-|. +
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~ 198 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVA 198 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHH
Confidence 3678999999999996 55899999999999999999853 35556666666442 222111 1121 1
Q ss_pred ----CcCC--CCCCcEEEEcCCch-hhc----cCCCCeEEe
Q 041426 70 ----DLVL--SQERGTVILDDTES-VWS----DHTKNLKVV 99 (109)
Q Consensus 70 ----~~l~--~~~~~viivDd~~~-~~~----~~~~N~i~i 99 (109)
+.++ .+.+++|+|.|+.. ..+ .+.+|+|.|
T Consensus 199 ~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~i 239 (277)
T TIGR01544 199 LRNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKI 239 (277)
T ss_pred HHHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEE
Confidence 1123 46788999999873 222 134677776
No 50
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=96.53 E-value=0.0027 Score=45.25 Aligned_cols=81 Identities=21% Similarity=0.108 Sum_probs=51.7
Q ss_pred eEEECccHHHHHHHhhc-CccEEEEeCCchhhHHH--HHHHhcCCCCcccceEEeecCCCC------CceeccCcCCCCC
Q 041426 6 LVKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATA--AVKVLDSNSKYFNSRIIAQEDFKV------KDRKNLDLVLSQE 76 (109)
Q Consensus 6 ~v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~--i~~~lDp~~~~f~~r~~~r~~~~~------~~~KdL~~l~~~~ 76 (109)
.+.+.||+.++|+.|.+ .+.++|.||+....... ....++-. .+|.. ++..++... .+.+-++.++.++
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~-~~fd~-v~~s~~~~~~KP~p~~~~~~~~~~g~~~ 169 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIM-ALFDA-VVESCLEGLRKPDPRIYQLMLERLGVAP 169 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhH-hhCCE-EEEeeecCCCCCCHHHHHHHHHHcCCCH
Confidence 35678999999999975 59999999998765222 22212211 34644 443332211 1334456677788
Q ss_pred CcEEEEcCCchh
Q 041426 77 RGTVILDDTESV 88 (109)
Q Consensus 77 ~~viivDd~~~~ 88 (109)
+.+++|||++.-
T Consensus 170 ~~~l~i~D~~~d 181 (211)
T TIGR02247 170 EECVFLDDLGSN 181 (211)
T ss_pred HHeEEEcCCHHH
Confidence 999999998753
No 51
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=96.51 E-value=0.0069 Score=45.00 Aligned_cols=82 Identities=16% Similarity=0.060 Sum_probs=58.1
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCC-CCCc
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLS-QERG 78 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~-~~~~ 78 (109)
+..-||+.++|+.|. +.+.+.|-|++.+..+..+++.+.-.+ +|...+++.++.... +.+=++.++. +++.
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e 178 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQG-YRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAA 178 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcc
Confidence 456799999999996 469999999999999999998765443 332345555543221 2333455665 4688
Q ss_pred EEEEcCCchhh
Q 041426 79 TVILDDTESVW 89 (109)
Q Consensus 79 viivDd~~~~~ 89 (109)
+|+|+|++.-.
T Consensus 179 ~l~IGDs~~Di 189 (267)
T PRK13478 179 CVKVDDTVPGI 189 (267)
T ss_pred eEEEcCcHHHH
Confidence 99999998433
No 52
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=96.40 E-value=0.0065 Score=45.95 Aligned_cols=79 Identities=13% Similarity=0.066 Sum_probs=56.6
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC---ceeccCcCCCCCCcEEEE
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK---DRKNLDLVLSQERGTVIL 82 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~---~~KdL~~l~~~~~~viiv 82 (109)
+..-||+.++|+.|. +.+.+.|.|++.+.++..+++.++-. .+|.. +++.+..... +.+=+..++.+.+.+++|
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~-~~F~~-vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~I 218 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLR-SLFSV-VQAGTPILSKRRALSQLVAREGWQPAAVMYV 218 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh-hheEE-EEecCCCCCCHHHHHHHHHHhCcChhHEEEE
Confidence 356799999999997 56899999999999999999988765 45643 4443332111 112223345677899999
Q ss_pred cCCch
Q 041426 83 DDTES 87 (109)
Q Consensus 83 Dd~~~ 87 (109)
+|++.
T Consensus 219 GDs~~ 223 (273)
T PRK13225 219 GDETR 223 (273)
T ss_pred CCCHH
Confidence 99974
No 53
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=96.35 E-value=0.0052 Score=43.41 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=53.0
Q ss_pred EEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecC-------CCCCcee--ccCcCCCCCC
Q 041426 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQED-------FKVKDRK--NLDLVLSQER 77 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~-------~~~~~~K--dL~~l~~~~~ 77 (109)
+...||+.++|+.+.+.+.++|.|++...+++.+++.+.-. .+|.+.+...++ ......| =+..++....
T Consensus 67 ~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~-~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~ 145 (205)
T PRK13582 67 LDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWP-TLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGY 145 (205)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCc-hhhcceEEECCCCeEECccccccchHHHHHHHHHHhCC
Confidence 34689999999999877999999999999999999987654 355444322111 0011111 1112233447
Q ss_pred cEEEEcCCch
Q 041426 78 GTVILDDTES 87 (109)
Q Consensus 78 ~viivDd~~~ 87 (109)
.++.|.|+..
T Consensus 146 ~~v~iGDs~~ 155 (205)
T PRK13582 146 RVIAAGDSYN 155 (205)
T ss_pred eEEEEeCCHH
Confidence 8999999874
No 54
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=96.32 E-value=0.0077 Score=44.38 Aligned_cols=80 Identities=18% Similarity=0.031 Sum_probs=55.4
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhc---CCCCcccceEEeecCCCC----CceeccCcCCCCCCc
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLD---SNSKYFNSRIIAQEDFKV----KDRKNLDLVLSQERG 78 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lD---p~~~~f~~r~~~r~~~~~----~~~KdL~~l~~~~~~ 78 (109)
..+.|++.++|+.+. +.+.++|+|+++......+++..+ -. .+|.. ++....+.. .+.+=++.++.+++.
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~-~~f~~-~fd~~~g~KP~p~~y~~i~~~lgv~p~e 171 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLT-PYFSG-YFDTTVGLKTEAQSYVKIAGQLGSPPRE 171 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchh-hhcce-EEEeCcccCCCHHHHHHHHHHhCcChhH
Confidence 457899999999995 578999999999999988887653 22 23443 232111111 133445567778999
Q ss_pred EEEEcCCchh
Q 041426 79 TVILDDTESV 88 (109)
Q Consensus 79 viivDd~~~~ 88 (109)
+++|+|++.-
T Consensus 172 ~lfVgDs~~D 181 (220)
T TIGR01691 172 ILFLSDIINE 181 (220)
T ss_pred EEEEeCCHHH
Confidence 9999999743
No 55
>PLN02940 riboflavin kinase
Probab=96.32 E-value=0.0046 Score=48.84 Aligned_cols=80 Identities=10% Similarity=0.128 Sum_probs=57.2
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHH-HhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCc
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVK-VLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERG 78 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~-~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~ 78 (109)
+...||+.++|+.|. ..+.+.|-|++.+.++..+++ ..+-. .+|.. +++.+++... +..-++.++.++++
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~-~~Fd~-ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~ 169 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK-ESFSV-IVGGDEVEKGKPSPDIFLEAAKRLNVEPSN 169 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH-hhCCE-EEehhhcCCCCCCHHHHHHHHHHcCCChhH
Confidence 356799999999996 558999999999999998876 44433 45654 5554443221 23334556778899
Q ss_pred EEEEcCCchh
Q 041426 79 TVILDDTESV 88 (109)
Q Consensus 79 viivDd~~~~ 88 (109)
+|+|+|++.-
T Consensus 170 ~l~VGDs~~D 179 (382)
T PLN02940 170 CLVIEDSLPG 179 (382)
T ss_pred EEEEeCCHHH
Confidence 9999999843
No 56
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.29 E-value=0.013 Score=41.06 Aligned_cols=78 Identities=13% Similarity=0.140 Sum_probs=53.2
Q ss_pred eEEECccHHHHHHHhhc-CccEEEEeCC---------------chhhHHHHHHHhcCCCCcccceEEe----ecCCCCC-
Q 041426 6 LVKLRPFVRNFLKKASS-MFEMYVCTMG---------------TQCYATAAVKVLDSNSKYFNSRIIA----QEDFKVK- 64 (109)
Q Consensus 6 ~v~~RP~~~~FL~~l~~-~fei~i~T~~---------------~~~YA~~i~~~lDp~~~~f~~r~~~----r~~~~~~- 64 (109)
.++.-||+.+.|+.|.+ .|.++|.||. ...++..+++.++-. |...+++ .+++...
T Consensus 27 ~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~~~K 103 (161)
T TIGR01261 27 KLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII---FDDVLICPHFPDDNCDCRK 103 (161)
T ss_pred HeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc---eeEEEECCCCCCCCCCCCC
Confidence 46778999999999975 5999999996 356777777776664 5444444 2222111
Q ss_pred -----ceeccCcCCCCCCcEEEEcCCc
Q 041426 65 -----DRKNLDLVLSQERGTVILDDTE 86 (109)
Q Consensus 65 -----~~KdL~~l~~~~~~viivDd~~ 86 (109)
...-++..+.+++.+++|+|+.
T Consensus 104 P~~~~~~~~~~~~~~~~~e~l~IGD~~ 130 (161)
T TIGR01261 104 PKIKLLEPYLKKNLIDKARSYVIGDRE 130 (161)
T ss_pred CCHHHHHHHHHHcCCCHHHeEEEeCCH
Confidence 1112234566889999999986
No 57
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.28 E-value=0.0033 Score=47.24 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=58.4
Q ss_pred EECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecC--------CCCC-----ceeccCcCC
Q 041426 8 KLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQED--------FKVK-----DRKNLDLVL 73 (109)
Q Consensus 8 ~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~--------~~~~-----~~KdL~~l~ 73 (109)
...|++.++|+.|.+ -+.++|.|+.+...+..+++.|+..+.+|.. ++..+. .... ..+-|..++
T Consensus 187 ~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~-i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~ 265 (300)
T PHA02530 187 KPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDD-LIGRPPDMHFQREQGDKRPDDVVKEEIFWEKI 265 (300)
T ss_pred CCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhh-hhCCcchhhhcccCCCCCCcHHHHHHHHHHHh
Confidence 568999999999975 4899999999999999999999888756643 333221 1110 122344445
Q ss_pred C-CCCcEEEEcCCchhhc
Q 041426 74 S-QERGTVILDDTESVWS 90 (109)
Q Consensus 74 ~-~~~~viivDd~~~~~~ 90 (109)
. +.+.+++|||++..-.
T Consensus 266 ~~~~~~~~~vgD~~~d~~ 283 (300)
T PHA02530 266 APKYDVLLAVDDRDQVVD 283 (300)
T ss_pred ccCceEEEEEcCcHHHHH
Confidence 5 5799999999985443
No 58
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=96.19 E-value=0.0096 Score=41.11 Aligned_cols=41 Identities=10% Similarity=0.254 Sum_probs=35.6
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCC
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSN 47 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~ 47 (109)
+.++||+.++|+.+.+ .+.++|-|++...++..+++.++-.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 112 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEK 112 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCCh
Confidence 4689999999999965 5899999999999999999886543
No 59
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.13 E-value=0.0073 Score=41.75 Aligned_cols=78 Identities=13% Similarity=0.206 Sum_probs=52.7
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCcE
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERGT 79 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~v 79 (109)
+...||+.++|+.|. ..+.+.|-|++. .+..+++.+.-. .+|.. ++..++.... +.+-++.++.+.+++
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~-~~f~~-~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~ 161 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLI-DYFDA-IVDPAEIKKGKPDPEIFLAAAEGLGVSPSEC 161 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcH-hhCcE-EEehhhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence 357899999999996 558999999864 356677766544 35654 4443332211 233445567788999
Q ss_pred EEEcCCchh
Q 041426 80 VILDDTESV 88 (109)
Q Consensus 80 iivDd~~~~ 88 (109)
|+|+|++.-
T Consensus 162 v~vgD~~~d 170 (185)
T TIGR01990 162 IGIEDAQAG 170 (185)
T ss_pred EEEecCHHH
Confidence 999999743
No 60
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=95.96 E-value=0.018 Score=39.49 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=39.8
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEE
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRII 56 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~ 56 (109)
+.++||+.++|+.+. ....++|.|++.+.|+..+++.+.-. .++.+++.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~~~~~ 121 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID-DVFANRLE 121 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc-hheeeeEE
Confidence 457899999999996 55899999999999999999987654 45555443
No 61
>PHA02597 30.2 hypothetical protein; Provisional
Probab=95.96 E-value=0.012 Score=41.47 Aligned_cols=81 Identities=11% Similarity=0.057 Sum_probs=49.6
Q ss_pred EEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCC---CcccceEEeecCCCCC---ceeccCcCCCCCCcEE
Q 041426 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNS---KYFNSRIIAQEDFKVK---DRKNLDLVLSQERGTV 80 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~---~~f~~r~~~r~~~~~~---~~KdL~~l~~~~~~vi 80 (109)
+...||+.++|+.|.+.+.+++-|+++..-...+.+.+.-.+ .+|+. +++.+..... +.+=++.++ ++.+|
T Consensus 73 ~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~-i~~~~~~~~kp~~~~~a~~~~~--~~~~v 149 (197)
T PHA02597 73 LSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFSE-VLMCGHDESKEKLFIKAKEKYG--DRVVC 149 (197)
T ss_pred ccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcccE-EEEeccCcccHHHHHHHHHHhC--CCcEE
Confidence 457899999999998878887777776655544555543221 13433 4433333221 112233345 67899
Q ss_pred EEcCCchhhc
Q 041426 81 ILDDTESVWS 90 (109)
Q Consensus 81 ivDd~~~~~~ 90 (109)
+|||++.-..
T Consensus 150 ~vgDs~~di~ 159 (197)
T PHA02597 150 FVDDLAHNLD 159 (197)
T ss_pred EeCCCHHHHH
Confidence 9999986543
No 62
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=95.87 E-value=0.026 Score=43.68 Aligned_cols=45 Identities=16% Similarity=0.318 Sum_probs=39.3
Q ss_pred eEEEC-ccHHHHHHHhhcC-ccEEEEeCCchhhHHHHHHHhcCCCCcc
Q 041426 6 LVKLR-PFVRNFLKKASSM-FEMYVCTMGTQCYATAAVKVLDSNSKYF 51 (109)
Q Consensus 6 ~v~~R-P~~~~FL~~l~~~-fei~i~T~~~~~YA~~i~~~lDp~~~~f 51 (109)
-|.+| ||+.+.|++|.+. +.+.|+|++.+++|..+++.++-.+ +|
T Consensus 143 ~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~-YF 189 (301)
T TIGR01684 143 PVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDR-YF 189 (301)
T ss_pred ccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCc-cc
Confidence 46688 9999999999875 8999999999999999999988774 55
No 63
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=95.87 E-value=0.031 Score=36.93 Aligned_cols=76 Identities=13% Similarity=0.009 Sum_probs=51.9
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCc--------hhhHHHHHHHhcCCCCcccceEEeecCCCC---CceeccCcC-C
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGT--------QCYATAAVKVLDSNSKYFNSRIIAQEDFKV---KDRKNLDLV-L 73 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~--------~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~---~~~KdL~~l-~ 73 (109)
....|++.++|+.|. ..+.++|.|++. ..++.++++.+.-. ++.. +.+....+. .+.+=++.+ +
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~~~~-~~~~~~~KP~~~~~~~~~~~~~~ 100 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--IDVL-YACPHCRKPKPGMFLEALKRFNE 100 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC--EEEE-EECCCCCCCChHHHHHHHHHcCC
Confidence 577899999999996 559999999999 88888888877543 1111 222111111 022334556 4
Q ss_pred CCCCcEEEEcCC
Q 041426 74 SQERGTVILDDT 85 (109)
Q Consensus 74 ~~~~~viivDd~ 85 (109)
.+++.+++|+|+
T Consensus 101 ~~~~~~v~IGD~ 112 (132)
T TIGR01662 101 IDPEESVYVGDQ 112 (132)
T ss_pred CChhheEEEcCC
Confidence 788999999994
No 64
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=95.69 E-value=0.013 Score=45.02 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=51.6
Q ss_pred ECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHH----hcCCCCcccceEEeecCCCCCce-eccCcCCCCCCcEEEE
Q 041426 9 LRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKV----LDSNSKYFNSRIIAQEDFKVKDR-KNLDLVLSQERGTVIL 82 (109)
Q Consensus 9 ~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~----lDp~~~~f~~r~~~r~~~~~~~~-KdL~~l~~~~~~viiv 82 (109)
..|++.++|+.|. +-+.+.|.|+.....|..+++. +... .+|..-...... ....+ +=+..++.+++.+|+|
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~-~~f~~~~~~~~p-k~~~i~~~~~~l~i~~~~~vfi 109 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQA-EDFDARSINWGP-KSESLRKIAKKLNLGTDSFLFI 109 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcH-HHeeEEEEecCc-hHHHHHHHHHHhCCCcCcEEEE
Confidence 3588999999997 5689999999999999999986 4333 234321111110 00122 2234567788999999
Q ss_pred cCCch
Q 041426 83 DDTES 87 (109)
Q Consensus 83 Dd~~~ 87 (109)
||++.
T Consensus 110 dD~~~ 114 (320)
T TIGR01686 110 DDNPA 114 (320)
T ss_pred CCCHH
Confidence 99984
No 65
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=95.60 E-value=0.0034 Score=43.30 Aligned_cols=72 Identities=8% Similarity=0.054 Sum_probs=53.4
Q ss_pred EEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC------ceeccCcCCCCCCcEE
Q 041426 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNLDLVLSQERGTV 80 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL~~l~~~~~~vi 80 (109)
+...||+.++|+. +.|.||+.+.++..+++.+.-. .+|.. +++.++.... +.+=++.++.+++.++
T Consensus 89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~-~~fd~-v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l 160 (175)
T TIGR01493 89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLP-WYFDR-AFSVDTVRAYKPDPVVYELVFDTVGLPPDRVL 160 (175)
T ss_pred CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCH-HHHhh-hccHhhcCCCCCCHHHHHHHHHHHCCCHHHeE
Confidence 3478999999993 7899999999999999887544 45654 5554443221 3344566778899999
Q ss_pred EEcCCc
Q 041426 81 ILDDTE 86 (109)
Q Consensus 81 ivDd~~ 86 (109)
+|+|++
T Consensus 161 ~vgD~~ 166 (175)
T TIGR01493 161 MVAAHQ 166 (175)
T ss_pred eEecCh
Confidence 999995
No 66
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=95.48 E-value=0.032 Score=40.41 Aligned_cols=50 Identities=8% Similarity=0.060 Sum_probs=42.3
Q ss_pred EEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEe
Q 041426 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIA 57 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~ 57 (109)
+.++||+.+||+.+.+...++|-|++...++..+++.+.-. .+|.+++..
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~-~~~an~l~~ 116 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFP-TLLCHKLEI 116 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCc-hhhceeeEE
Confidence 35799999999999887899999999999999999998765 466665544
No 67
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=95.48 E-value=0.061 Score=37.60 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=24.3
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCch
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQ 34 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~ 34 (109)
+.+-||+.++|++|.+ -|.++|.||+..
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4567999999999975 599999999985
No 68
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=95.39 E-value=0.042 Score=42.58 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=38.6
Q ss_pred eEEEC-ccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCCCcc
Q 041426 6 LVKLR-PFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNSKYF 51 (109)
Q Consensus 6 ~v~~R-P~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~~~f 51 (109)
-|.+| |++.+.|++|++ .+.+.|+|+|.+++|..+++.+.-.+ +|
T Consensus 145 ~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~-yF 191 (303)
T PHA03398 145 PVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEG-YF 191 (303)
T ss_pred ccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCc-cc
Confidence 36678 999999999986 58999999999999999999887663 44
No 69
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=95.35 E-value=0.034 Score=44.71 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=55.1
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC-----ceeccCcCCCCCCcEE
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK-----DRKNLDLVLSQERGTV 80 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~-----~~KdL~~l~~~~~~vi 80 (109)
+...||+.++|+.|. +.+.+.|.|++.+.++..+++.++-. .+|.. +++.++.... +.+-++.+ +++.+|
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~-~~f~~-i~~~d~v~~~~kP~~~~~al~~l--~~~~~v 404 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLD-QWVTE-TFSIEQINSLNKSDLVKSILNKY--DIKEAA 404 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcH-hhcce-eEecCCCCCCCCcHHHHHHHHhc--CcceEE
Confidence 567899999999996 56999999999999999999987655 35644 4544433210 11222223 357899
Q ss_pred EEcCCch
Q 041426 81 ILDDTES 87 (109)
Q Consensus 81 ivDd~~~ 87 (109)
+|.|++.
T Consensus 405 ~VGDs~~ 411 (459)
T PRK06698 405 VVGDRLS 411 (459)
T ss_pred EEeCCHH
Confidence 9999984
No 70
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.28 E-value=0.038 Score=49.06 Aligned_cols=81 Identities=10% Similarity=0.100 Sum_probs=60.4
Q ss_pred ECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCC------CceeccCcCCCCCCcEEE
Q 041426 9 LRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKV------KDRKNLDLVLSQERGTVI 81 (109)
Q Consensus 9 ~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~------~~~KdL~~l~~~~~~vii 81 (109)
.-||+.++|++|. +-+.+.|.|++...+++.+++.+.-...+|.. +++.++... .+.+-++.++.+++.+|+
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~-iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~ 240 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDA-IVSADAFENLKPAPDIFLAAAKILGVPTSECVV 240 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCE-EEECcccccCCCCHHHHHHHHHHcCcCcccEEE
Confidence 5799999999996 56999999999999999999887643345654 555444432 133445667778999999
Q ss_pred EcCCchhhc
Q 041426 82 LDDTESVWS 90 (109)
Q Consensus 82 vDd~~~~~~ 90 (109)
|+|++.-..
T Consensus 241 IgDs~~Di~ 249 (1057)
T PLN02919 241 IEDALAGVQ 249 (1057)
T ss_pred EcCCHHHHH
Confidence 999985443
No 71
>COG4996 Predicted phosphatase [General function prediction only]
Probab=95.22 E-value=0.097 Score=36.51 Aligned_cols=96 Identities=26% Similarity=0.302 Sum_probs=65.6
Q ss_pred ceeEEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC-ceeccCcC------CCC
Q 041426 4 DKLVKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK-DRKNLDLV------LSQ 75 (109)
Q Consensus 4 ~~~v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~-~~KdL~~l------~~~ 75 (109)
..-|.++|++.+||+++. .-|-+..+|=.-..-|-++++.||-. .+|..-++-.+..+.. ..+=|..+ .-.
T Consensus 37 G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~-~yFhy~ViePhP~K~~ML~~llr~i~~er~~~ik 115 (164)
T COG4996 37 GREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLL-QYFHYIVIEPHPYKFLMLSQLLREINTERNQKIK 115 (164)
T ss_pred CeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchh-hhEEEEEecCCChhHHHHHHHHHHHHHhhccccC
Confidence 356899999999999997 56777899999999999999999998 4786544443322111 11111112 236
Q ss_pred CCcEEEEcCCch----hhccCCCCeEEeCc
Q 041426 76 ERGTVILDDTES----VWSDHTKNLKVVEN 101 (109)
Q Consensus 76 ~~~viivDd~~~----~~~~~~~N~i~i~~ 101 (109)
++++|.+||+.. .|.. .+|+=-++.
T Consensus 116 P~~Ivy~DDR~iH~~~Iwe~-~G~V~~~~~ 144 (164)
T COG4996 116 PSEIVYLDDRRIHFGNIWEY-LGNVKCLEM 144 (164)
T ss_pred cceEEEEecccccHHHHHHh-cCCeeeeEe
Confidence 889999999974 4543 566554443
No 72
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=95.15 E-value=0.092 Score=36.74 Aligned_cols=78 Identities=6% Similarity=-0.069 Sum_probs=48.6
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCch---------------hhHHHHHHHhcCCCCcccceEEeecC----CCC---
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQ---------------CYATAAVKVLDSNSKYFNSRIIAQED----FKV--- 63 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~---------------~YA~~i~~~lDp~~~~f~~r~~~r~~----~~~--- 63 (109)
+...||+.++|++|++ -+.+.|.|+++. ++...+++.+ +..|..-+.+... ...
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~f~~i~~~~~~~~~~~~~~KP 104 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADR---GGRLDGIYYCPHHPEDGCDCRKP 104 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHc---CCccceEEECCCCCCCCCcCCCC
Confidence 4678999999999986 499999999873 2223333332 2224332333211 111
Q ss_pred ---CceeccCcCCCCCCcEEEEcCCch
Q 041426 64 ---KDRKNLDLVLSQERGTVILDDTES 87 (109)
Q Consensus 64 ---~~~KdL~~l~~~~~~viivDd~~~ 87 (109)
.+.+-+..++.+++++++|+|++.
T Consensus 105 ~p~~~~~~~~~l~~~~~~~~~VgDs~~ 131 (181)
T PRK08942 105 KPGMLLSIAERLNIDLAGSPMVGDSLR 131 (181)
T ss_pred CHHHHHHHHHHcCCChhhEEEEeCCHH
Confidence 123444556778899999999973
No 73
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=94.78 E-value=0.095 Score=37.94 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=56.8
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC-----ceeccCcCCCCCCcEE
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK-----DRKNLDLVLSQERGTV 80 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~-----~~KdL~~l~~~~~~vi 80 (109)
...-||+.+.|..++ +-|.+.|.|+.....++.+++.++-. .+|.-.+-..+....+ ...-+..++.+++++|
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~-~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLA-DYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCc-cccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 456799999999996 56899999999999999999998777 4665422222222221 1122344555667999
Q ss_pred EEcCCch
Q 041426 81 ILDDTES 87 (109)
Q Consensus 81 ivDd~~~ 87 (109)
+|-|+..
T Consensus 167 ~VGDs~~ 173 (220)
T COG0546 167 MVGDSLN 173 (220)
T ss_pred EECCCHH
Confidence 9999874
No 74
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=94.58 E-value=0.077 Score=37.13 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=48.8
Q ss_pred EECccHHHHHHHhhcC-ccEEEEeCCc-hhhHHHHHHHhcCCCCcccceEEeecCCCC---CceeccCcCCCCCCcEEEE
Q 041426 8 KLRPFVRNFLKKASSM-FEMYVCTMGT-QCYATAAVKVLDSNSKYFNSRIIAQEDFKV---KDRKNLDLVLSQERGTVIL 82 (109)
Q Consensus 8 ~~RP~~~~FL~~l~~~-fei~i~T~~~-~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~---~~~KdL~~l~~~~~~viiv 82 (109)
..-|++.++|+.|.+. +.++|.|++. ...+..+.+.++-.. +. +.... .+.+=++.++.+.+.+++|
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~-------~~-~~~KP~p~~~~~~l~~~~~~~~~~l~I 114 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPV-------LP-HAVKPPGCAFRRAHPEMGLTSEQVAVV 114 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEE-------Ec-CCCCCChHHHHHHHHHcCCCHHHEEEE
Confidence 4569999999999765 9999999999 677777777654321 11 11111 1222344566778999999
Q ss_pred cCCc
Q 041426 83 DDTE 86 (109)
Q Consensus 83 Dd~~ 86 (109)
+|+.
T Consensus 115 GDs~ 118 (170)
T TIGR01668 115 GDRL 118 (170)
T ss_pred CCcc
Confidence 9996
No 75
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=94.56 E-value=0.09 Score=35.71 Aligned_cols=81 Identities=11% Similarity=0.038 Sum_probs=49.4
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCch---------------hhHHHHHHHhcCCCC-cccceEEeecCCC--CC---
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQ---------------CYATAAVKVLDSNSK-YFNSRIIAQEDFK--VK--- 64 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~---------------~YA~~i~~~lDp~~~-~f~~r~~~r~~~~--~~--- 64 (109)
+...||+.++|+.|. +-|.++|.|++.+ .++..+++.++-.-. .|.......+... ..
T Consensus 26 ~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~ 105 (147)
T TIGR01656 26 WQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPG 105 (147)
T ss_pred eEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHH
Confidence 467899999999996 6799999999874 456666666544310 1111010011111 10
Q ss_pred -ceeccCcCCCCCCcEEEEcCCch
Q 041426 65 -DRKNLDLVLSQERGTVILDDTES 87 (109)
Q Consensus 65 -~~KdL~~l~~~~~~viivDd~~~ 87 (109)
..+=+..++.+++.+++|+|++.
T Consensus 106 ~~~~~~~~~~~~~~e~i~IGDs~~ 129 (147)
T TIGR01656 106 LILEALKRLGVDASRSLVVGDRLR 129 (147)
T ss_pred HHHHHHHHcCCChHHEEEEcCCHH
Confidence 12223445678899999999864
No 76
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=94.54 E-value=0.065 Score=37.67 Aligned_cols=93 Identities=11% Similarity=0.080 Sum_probs=58.9
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCCCcccceEEe-ec-----------CCCCCceeccC---
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIA-QE-----------DFKVKDRKNLD--- 70 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~-r~-----------~~~~~~~KdL~--- 70 (109)
..++|++.++|+.+.+ -+.++|-|++...++..+++.+.-. .+|..++.. .+ +......+-+.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~-~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~ 164 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGID-NAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELL 164 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCc-ceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHH
Confidence 3579999999999865 6899999999999999999987765 355554432 11 10000011121
Q ss_pred -cCCCCCCcEEEEcCCchhhc--cCCCCeEEeC
Q 041426 71 -LVLSQERGTVILDDTESVWS--DHTKNLKVVE 100 (109)
Q Consensus 71 -~l~~~~~~viivDd~~~~~~--~~~~N~i~i~ 100 (109)
..+.+++.++.+-|++.=.. ...++.+.|.
T Consensus 165 ~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~ 197 (202)
T TIGR01490 165 AEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVN 197 (202)
T ss_pred HHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeC
Confidence 22446778888998874222 2245555443
No 77
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=94.53 E-value=0.062 Score=40.22 Aligned_cols=81 Identities=22% Similarity=0.210 Sum_probs=54.1
Q ss_pred EEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecC--------CCCC---ceeccCcCCC-
Q 041426 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQED--------FKVK---DRKNLDLVLS- 74 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~--------~~~~---~~KdL~~l~~- 74 (109)
+|.-|-+|+||-+|.+.. .++||||.+..|..++..|--.. .|.+-++..-. |+.. +-|-....+-
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieD-cFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~ 176 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIED-CFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGID 176 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHH-hccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCC
Confidence 456677999999999888 99999999999999999986653 35442222111 1110 1122222343
Q ss_pred CCCcEEEEcCCchhh
Q 041426 75 QERGTVILDDTESVW 89 (109)
Q Consensus 75 ~~~~viivDd~~~~~ 89 (109)
++++++++||+...-
T Consensus 177 ~p~~t~FfDDS~~NI 191 (244)
T KOG3109|consen 177 SPRNTYFFDDSERNI 191 (244)
T ss_pred CcCceEEEcCchhhH
Confidence 489999999997543
No 78
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=94.36 E-value=0.062 Score=39.34 Aligned_cols=73 Identities=11% Similarity=0.129 Sum_probs=48.1
Q ss_pred EEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCC-C-----ceeccCcCCCCCCcEE
Q 041426 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKV-K-----DRKNLDLVLSQERGTV 80 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~-~-----~~KdL~~l~~~~~~vi 80 (109)
+..-||+.++|+.|.+.+.+.|-||++.. ++...-. .+|.. +++.++... + +.+=++.++.+++.+|
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~-~~fd~-i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~ 184 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLG-DYFEF-VLRAGPHGRSKPFSDMYHLAAEKLNVPIGEIL 184 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcH-Hhhce-eEecccCCcCCCcHHHHHHHHHHcCCChhHEE
Confidence 34558999999999988999999998875 2322222 35544 444333321 1 2333455677889999
Q ss_pred EEcCCc
Q 041426 81 ILDDTE 86 (109)
Q Consensus 81 ivDd~~ 86 (109)
+|.|++
T Consensus 185 ~VGD~~ 190 (238)
T PRK10748 185 HVGDDL 190 (238)
T ss_pred EEcCCc
Confidence 998884
No 79
>PLN02811 hydrolase
Probab=94.33 E-value=0.06 Score=38.77 Aligned_cols=81 Identities=7% Similarity=0.030 Sum_probs=51.3
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHH-HHhcCCCCcccceEEeec--CCCC------CceeccCcCC---
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAV-KVLDSNSKYFNSRIIAQE--DFKV------KDRKNLDLVL--- 73 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~-~~lDp~~~~f~~r~~~r~--~~~~------~~~KdL~~l~--- 73 (109)
+.+.||+.++|+.|++ .+.+.|-|++.+.++...+ +...-. .+|.. +++.+ ++.. .+.+=+..++
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~~-i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~ 154 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMHH-VVTGDDPEVKQGKPAPDIFLAAARRFEDGP 154 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCCE-EEECChhhccCCCCCcHHHHHHHHHhCCCC
Confidence 3567999999999964 6999999999987665432 221111 24543 55544 3321 1223334443
Q ss_pred CCCCcEEEEcCCchhh
Q 041426 74 SQERGTVILDDTESVW 89 (109)
Q Consensus 74 ~~~~~viivDd~~~~~ 89 (109)
...+.+|+|+|++.-.
T Consensus 155 ~~~~~~v~IgDs~~di 170 (220)
T PLN02811 155 VDPGKVLVFEDAPSGV 170 (220)
T ss_pred CCccceEEEeccHhhH
Confidence 6789999999998533
No 80
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=94.02 E-value=0.065 Score=37.98 Aligned_cols=76 Identities=20% Similarity=0.124 Sum_probs=41.7
Q ss_pred EECccHHHHHHHhhcC-ccEEEEeCCchh-h---HHHHHHHhcCC-CCcc-cceEEeecCCCCCceeccCcCCCCCCcEE
Q 041426 8 KLRPFVRNFLKKASSM-FEMYVCTMGTQC-Y---ATAAVKVLDSN-SKYF-NSRIIAQEDFKVKDRKNLDLVLSQERGTV 80 (109)
Q Consensus 8 ~~RP~~~~FL~~l~~~-fei~i~T~~~~~-Y---A~~i~~~lDp~-~~~f-~~r~~~r~~~~~~~~KdL~~l~~~~~~vi 80 (109)
..=||+.+.|++|.+. +++++-|+.... + +..=.+.|+-+ +.++ .+.++.. -|. .++.+ |
T Consensus 73 ~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~-------~K~--~v~~D----v 139 (191)
T PF06941_consen 73 PPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTG-------DKT--LVGGD----V 139 (191)
T ss_dssp -B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEES-------SGG--GC--S----E
T ss_pred CccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEec-------CCC--eEecc----E
Confidence 4558999999999987 477777776655 2 33334555543 1122 2333331 132 23333 7
Q ss_pred EEcCCchhhccCCCCe
Q 041426 81 ILDDTESVWSDHTKNL 96 (109)
Q Consensus 81 ivDd~~~~~~~~~~N~ 96 (109)
+|||++.....-.+.+
T Consensus 140 lIDD~~~n~~~~~~~g 155 (191)
T PF06941_consen 140 LIDDRPHNLEQFANAG 155 (191)
T ss_dssp EEESSSHHHSS-SSES
T ss_pred EecCChHHHHhccCCC
Confidence 9999998776533444
No 81
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=93.74 E-value=0.073 Score=41.91 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=39.6
Q ss_pred CcceeEEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHh-c
Q 041426 2 DNDKLVKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVL-D 45 (109)
Q Consensus 2 ~~~~~v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~l-D 45 (109)
|++-||.+-||+.++|+.|.+ -..+.|-||+...||+.+++.+ +
T Consensus 178 dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 178 NPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred CHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 567789999999999999965 5889999999999999999986 5
No 82
>PLN02954 phosphoserine phosphatase
Probab=93.64 E-value=0.21 Score=35.71 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=38.8
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCC-CcccceE
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNS-KYFNSRI 55 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~-~~f~~r~ 55 (109)
..++||+.++|+.+.+ ...++|-|++.+.++..+++.+.-.. .+|.+.+
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~ 133 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQI 133 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEE
Confidence 3578999999999964 58899999999999999999875432 3565433
No 83
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=93.33 E-value=0.35 Score=38.23 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=48.2
Q ss_pred eEEECccHHHHHHHhhc-CccEEEEeCC---------------chhhHHHHHHHhcCCCCcccceEEee----cCCCCC-
Q 041426 6 LVKLRPFVRNFLKKASS-MFEMYVCTMG---------------TQCYATAAVKVLDSNSKYFNSRIIAQ----EDFKVK- 64 (109)
Q Consensus 6 ~v~~RP~~~~FL~~l~~-~fei~i~T~~---------------~~~YA~~i~~~lDp~~~~f~~r~~~r----~~~~~~- 64 (109)
.+.+.||+.++|++|.+ .+.++|.|++ .+.++.++++.+.- .|..-+++. +++..+
T Consensus 28 ~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl---~fd~i~i~~~~~sd~~~~rK 104 (354)
T PRK05446 28 KLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGI---KFDEVLICPHFPEDNCSCRK 104 (354)
T ss_pred cceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCC---ceeeEEEeCCcCcccCCCCC
Confidence 47889999999999975 6999999995 24445555554332 243323331 222111
Q ss_pred ----ce-eccCcCCCCCCcEEEEcCCc
Q 041426 65 ----DR-KNLDLVLSQERGTVILDDTE 86 (109)
Q Consensus 65 ----~~-KdL~~l~~~~~~viivDd~~ 86 (109)
.+ .-+..++.+++++++|.|+.
T Consensus 105 P~p~~l~~a~~~l~v~~~~svmIGDs~ 131 (354)
T PRK05446 105 PKTGLVEEYLAEGAIDLANSYVIGDRE 131 (354)
T ss_pred CCHHHHHHHHHHcCCCcccEEEEcCCH
Confidence 01 11233456889999999986
No 84
>PRK06769 hypothetical protein; Validated
Probab=93.23 E-value=0.21 Score=35.00 Aligned_cols=79 Identities=13% Similarity=0.118 Sum_probs=47.6
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchhh-----HHHHHHHhcCCCCcccceEEeec----CCCC------CceeccC
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQCY-----ATAAVKVLDSNSKYFNSRIIAQE----DFKV------KDRKNLD 70 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~Y-----A~~i~~~lDp~~~~f~~r~~~r~----~~~~------~~~KdL~ 70 (109)
+..-||+.++|++|.+ -+.+.|.|++.... .......+...+ |.+.+.+.. .... .+.+-++
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~ 104 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFG--FDDIYLCPHKHGDGCECRKPSTGMLLQAAE 104 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCC--cCEEEECcCCCCCCCCCCCCCHHHHHHHHH
Confidence 4578999999999964 68999999987521 112233333222 222233211 1111 1233455
Q ss_pred cCCCCCCcEEEEcCCch
Q 041426 71 LVLSQERGTVILDDTES 87 (109)
Q Consensus 71 ~l~~~~~~viivDd~~~ 87 (109)
.++.+++.+++|+|++.
T Consensus 105 ~l~~~p~~~i~IGD~~~ 121 (173)
T PRK06769 105 KHGLDLTQCAVIGDRWT 121 (173)
T ss_pred HcCCCHHHeEEEcCCHH
Confidence 56778999999999974
No 85
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=93.19 E-value=0.24 Score=34.71 Aligned_cols=74 Identities=11% Similarity=0.015 Sum_probs=47.0
Q ss_pred ECccHHHHHHHhh-cCccEEEEeCCchh------------hHHHHHHHhcCCCCcccceEEeecCCCCC------ceecc
Q 041426 9 LRPFVRNFLKKAS-SMFEMYVCTMGTQC------------YATAAVKVLDSNSKYFNSRIIAQEDFKVK------DRKNL 69 (109)
Q Consensus 9 ~RP~~~~FL~~l~-~~fei~i~T~~~~~------------YA~~i~~~lDp~~~~f~~r~~~r~~~~~~------~~KdL 69 (109)
+-||+.+.|+.|. +.+.+.|.|+++.. ++..+++.++-. + .-++..+..... ...=+
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~---~-~~ii~~~~~~~~KP~p~~~~~~~ 118 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP---I-QVLAATHAGLYRKPMTGMWEYLQ 118 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC---E-EEEEecCCCCCCCCccHHHHHHH
Confidence 4599999999995 68999999998763 455666665543 1 112322221110 11112
Q ss_pred CcCC--CCCCcEEEEcCCc
Q 041426 70 DLVL--SQERGTVILDDTE 86 (109)
Q Consensus 70 ~~l~--~~~~~viivDd~~ 86 (109)
..++ .+++.+++|.|++
T Consensus 119 ~~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 119 SQYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred HHcCCCCCchhcEEEECCC
Confidence 3445 6788999999986
No 86
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=92.42 E-value=0.15 Score=35.58 Aligned_cols=76 Identities=14% Similarity=0.093 Sum_probs=53.5
Q ss_pred EEECccHHHHHHHhhcC-ccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecC-CCCCc--eeccCcCCCCCCcEEEE
Q 041426 7 VKLRPFVRNFLKKASSM-FEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQED-FKVKD--RKNLDLVLSQERGTVIL 82 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~~-fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~-~~~~~--~KdL~~l~~~~~~viiv 82 (109)
-.+||++.++|++|.+. ..+.|.|..+..-|..+.+.+.-... .++++.. .+... .+=++.++.+...|++|
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~----~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~v 201 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDS----IVFARVIGKPEPKIFLRIIKELQVKPGEVAMV 201 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSE----EEEESHETTTHHHHHHHHHHHHTCTGGGEEEE
T ss_pred CcchhhhhhhhhhhhccCcceeeeeccccccccccccccccccc----cccccccccccchhHHHHHHHHhcCCCEEEEE
Confidence 45799999999999876 89999999999999999998866422 2333221 11111 12223456577799999
Q ss_pred cCCc
Q 041426 83 DDTE 86 (109)
Q Consensus 83 Dd~~ 86 (109)
-|..
T Consensus 202 GDg~ 205 (215)
T PF00702_consen 202 GDGV 205 (215)
T ss_dssp ESSG
T ss_pred ccCH
Confidence 9976
No 87
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=91.24 E-value=0.54 Score=34.34 Aligned_cols=93 Identities=11% Similarity=0.091 Sum_probs=62.3
Q ss_pred EEECccHHHHHHHhhcC-ccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecC-CCC--------Cceec--c----C
Q 041426 7 VKLRPFVRNFLKKASSM-FEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQED-FKV--------KDRKN--L----D 70 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~~-fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~-~~~--------~~~Kd--L----~ 70 (109)
+.++||..+.++.+.+. +.++|.|+|...++++|.+.|.-+. .+.+++...+. ... ..-|. | +
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~-~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~ 154 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY-VVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA 154 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch-heeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence 67899999999999755 9999999999999999999987763 45554444332 111 01121 2 2
Q ss_pred cCCCCCCcEEEEcCCchhhc--cCCCCeEEeC
Q 041426 71 LVLSQERGTVILDDTESVWS--DHTKNLKVVE 100 (109)
Q Consensus 71 ~l~~~~~~viivDd~~~~~~--~~~~N~i~i~ 100 (109)
.++.+++.++.+-|+..=-+ ...++.+.+.
T Consensus 155 ~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n 186 (212)
T COG0560 155 ELGIPLEETVAYGDSANDLPMLEAAGLPIAVN 186 (212)
T ss_pred HcCCCHHHeEEEcCchhhHHHHHhCCCCeEeC
Confidence 34667889999998763211 2345555543
No 88
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=90.16 E-value=0.34 Score=34.50 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=47.0
Q ss_pred eeEEECccHHHHHHHhh-cCccEEEEe-CCchhhHHHHHHHhcCC---------CCcccceEEeecCCCCCceeccC-cC
Q 041426 5 KLVKLRPFVRNFLKKAS-SMFEMYVCT-MGTQCYATAAVKVLDSN---------SKYFNSRIIAQEDFKVKDRKNLD-LV 72 (109)
Q Consensus 5 ~~v~~RP~~~~FL~~l~-~~fei~i~T-~~~~~YA~~i~~~lDp~---------~~~f~~r~~~r~~~~~~~~KdL~-~l 72 (109)
.-+.+-|++.+.|++|. .-.+|.+-| +..++.|.++++.|+-. ..+|..--+..+ ++..+.+.|. ..
T Consensus 42 ~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g-sK~~Hf~~i~~~t 120 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG-SKTTHFRRIHRKT 120 (169)
T ss_dssp -EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS--HHHHHHHHHHHH
T ss_pred CEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecC-chHHHHHHHHHhc
Confidence 35788999999999997 578899988 57899999999997755 123433222222 1112333343 34
Q ss_pred CCCCCcEEEEcCCchh
Q 041426 73 LSQERGTVILDDTESV 88 (109)
Q Consensus 73 ~~~~~~viivDd~~~~ 88 (109)
+-+.+.+++.||....
T Consensus 121 gI~y~eMlFFDDe~~N 136 (169)
T PF12689_consen 121 GIPYEEMLFFDDESRN 136 (169)
T ss_dssp ---GGGEEEEES-HHH
T ss_pred CCChhHEEEecCchhc
Confidence 6688999999998643
No 89
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=89.70 E-value=0.55 Score=34.37 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=32.9
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHH--HHHHHhcCC
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYAT--AAVKVLDSN 47 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~--~i~~~lDp~ 47 (109)
...-||+.++|++|. ..+.+.|.||++++.+. +.++.+.-.
T Consensus 23 ~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~ 66 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGIN 66 (242)
T ss_pred CccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCC
Confidence 345799999999997 56899999999998776 566666544
No 90
>PRK11590 hypothetical protein; Provisional
Probab=89.34 E-value=0.65 Score=33.32 Aligned_cols=39 Identities=18% Similarity=0.035 Sum_probs=33.6
Q ss_pred EEECccHHHHH-HHhh-cCccEEEEeCCchhhHHHHHHHhc
Q 041426 7 VKLRPFVRNFL-KKAS-SMFEMYVCTMGTQCYATAAVKVLD 45 (109)
Q Consensus 7 v~~RP~~~~FL-~~l~-~~fei~i~T~~~~~YA~~i~~~lD 45 (109)
+..+||+.+.| +.+. ..+.++|-|++...|+.++++.+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 35689999999 5676 589999999999999999998754
No 91
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=87.71 E-value=1.7 Score=33.70 Aligned_cols=47 Identities=21% Similarity=0.284 Sum_probs=37.9
Q ss_pred ccHHHHHHHhhcCc-cEEEEeCCchhhHHHHHHHhcCCCCcccceEEeec
Q 041426 11 PFVRNFLKKASSMF-EMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQE 59 (109)
Q Consensus 11 P~~~~FL~~l~~~f-ei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~ 59 (109)
|.+-+-|.+|.+.+ -+++||.|++++|..-++.+.-. .+|.. +++++
T Consensus 145 ~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~-~~Fd~-ii~~G 192 (297)
T PF05152_consen 145 PAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLE-GYFDI-IICGG 192 (297)
T ss_pred hHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCc-cccEE-EEeCC
Confidence 77889999998766 79999999999999999999866 45633 44433
No 92
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=87.52 E-value=1.8 Score=31.82 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=34.3
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhc
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLD 45 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lD 45 (109)
+++|||.++|.+++.+ --.++|-++|...|..++.+.|-
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhc
Confidence 6789999999999974 57799999999999999997653
No 93
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=87.07 E-value=1.1 Score=32.53 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=32.3
Q ss_pred EECccHHHHHH-Hhh-cCccEEEEeCCchhhHHHHHHH
Q 041426 8 KLRPFVRNFLK-KAS-SMFEMYVCTMGTQCYATAAVKV 43 (109)
Q Consensus 8 ~~RP~~~~FL~-~l~-~~fei~i~T~~~~~YA~~i~~~ 43 (109)
..+|++.+.|+ .+. +-..++|-|++...|+.++++.
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHh
Confidence 56899999996 777 6899999999999999999965
No 94
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=86.79 E-value=1.5 Score=35.74 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=36.4
Q ss_pred CcceeEEECccHHHHHHHhhcCc-cEEEEeCCchhhHHHHHHH-hcC
Q 041426 2 DNDKLVKLRPFVRNFLKKASSMF-EMYVCTMGTQCYATAAVKV-LDS 46 (109)
Q Consensus 2 ~~~~~v~~RP~~~~FL~~l~~~f-ei~i~T~~~~~YA~~i~~~-lDp 46 (109)
|++-||.+-|.+..+|+.|.+.= .+.+-|||.-+|++.+++. +++
T Consensus 177 dp~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~ 223 (448)
T PF05761_consen 177 DPEKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGP 223 (448)
T ss_dssp TCCCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGC
T ss_pred CHHHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCC
Confidence 67788999999999999998776 6999999999999999985 666
No 95
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=85.88 E-value=1.3 Score=30.38 Aligned_cols=45 Identities=4% Similarity=0.131 Sum_probs=34.2
Q ss_pred ccHHHHHHHh-hcCccEEEEeCCchhhHHHHHHHhcCCC-CcccceE
Q 041426 11 PFVRNFLKKA-SSMFEMYVCTMGTQCYATAAVKVLDSNS-KYFNSRI 55 (109)
Q Consensus 11 P~~~~FL~~l-~~~fei~i~T~~~~~YA~~i~~~lDp~~-~~f~~r~ 55 (109)
|++.++|+++ +..++++|-|++...++..+++.+.-.. .++.+++
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 3444999998 6899999999999999999998765432 2444444
No 96
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=85.76 E-value=0.93 Score=37.61 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=35.4
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcC
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDS 46 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp 46 (109)
-..||++.+.+++|.+ .++++|.|+..+.+|+.+++.+.-
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi 444 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGI 444 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 3579999999999975 599999999999999999998754
No 97
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=84.26 E-value=0.94 Score=32.03 Aligned_cols=28 Identities=25% Similarity=0.622 Sum_probs=24.4
Q ss_pred EECccHHHHHHHhhcCccEEEEeCCchh
Q 041426 8 KLRPFVRNFLKKASSMFEMYVCTMGTQC 35 (109)
Q Consensus 8 ~~RP~~~~FL~~l~~~fei~i~T~~~~~ 35 (109)
..-||.++-+++|.+.|+|+|-|++.--
T Consensus 68 ~V~p~aq~v~keLt~~y~vYivtaamdh 95 (180)
T COG4502 68 GVQPFAQTVLKELTSIYNVYIVTAAMDH 95 (180)
T ss_pred CccccHHHHHHHHHhhheEEEEEeccCC
Confidence 4569999999999999999999999543
No 98
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=83.78 E-value=4.8 Score=33.52 Aligned_cols=75 Identities=19% Similarity=0.125 Sum_probs=50.5
Q ss_pred EECccHHHHHHHhh-cCccEEEEeCCch------------hhHHHHHHHhcCCCCcccceEEeecCCCCC---------c
Q 041426 8 KLRPFVRNFLKKAS-SMFEMYVCTMGTQ------------CYATAAVKVLDSNSKYFNSRIIAQEDFKVK---------D 65 (109)
Q Consensus 8 ~~RP~~~~FL~~l~-~~fei~i~T~~~~------------~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~---------~ 65 (109)
.+-||+.+.|++|. .-|.|+|+||... ..+..+++.++-. |. -+++.+.+..+ .
T Consensus 197 ~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip---fd-viia~~~~~~RKP~pGm~~~a 272 (526)
T TIGR01663 197 IIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP---FQ-VFIAIGAGFYRKPLTGMWDHL 272 (526)
T ss_pred ecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc---eE-EEEeCCCCCCCCCCHHHHHHH
Confidence 35799999999996 5699999999877 4677777777532 43 34444433221 1
Q ss_pred eeccC-cCCCCCCcEEEEcCCc
Q 041426 66 RKNLD-LVLSQERGTVILDDTE 86 (109)
Q Consensus 66 ~KdL~-~l~~~~~~viivDd~~ 86 (109)
.+++. .++.+++..++|.|+.
T Consensus 273 ~~~~~~~~~Id~~~S~~VGDaa 294 (526)
T TIGR01663 273 KEEANDGTEIQEDDCFFVGDAA 294 (526)
T ss_pred HHhcCcccCCCHHHeEEeCCcc
Confidence 23332 1245889999999987
No 99
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=82.68 E-value=2.4 Score=31.41 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=58.0
Q ss_pred EECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCC-CCcccceEEeec----------------CCCCCceecc
Q 041426 8 KLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSN-SKYFNSRIIAQE----------------DFKVKDRKNL 69 (109)
Q Consensus 8 ~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~-~~~f~~r~~~r~----------------~~~~~~~KdL 69 (109)
.+-||++|+-+.|. ....+++-+-|-+..+..|.+.|+-. .+.+.+++.-.. .++..-++-|
T Consensus 88 ~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~l 167 (227)
T KOG1615|consen 88 TLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALL 167 (227)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHHH
Confidence 46799999999995 67899999999999999999998743 234545443222 1111112222
Q ss_pred CcCCCCCCcEEEEcCCc---------hhhccCCCCeE
Q 041426 70 DLVLSQERGTVILDDTE---------SVWSDHTKNLK 97 (109)
Q Consensus 70 ~~l~~~~~~viivDd~~---------~~~~~~~~N~i 97 (109)
.. +.+-+.+++|-|-. +.|...+.|.+
T Consensus 168 rk-~~~~~~~~mvGDGatDlea~~pa~afi~~~g~~~ 203 (227)
T KOG1615|consen 168 RK-NYNYKTIVMVGDGATDLEAMPPADAFIGFGGNVI 203 (227)
T ss_pred Hh-CCChheeEEecCCccccccCCchhhhhccCCceE
Confidence 22 56677788888753 34555556554
No 100
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=82.64 E-value=2.4 Score=27.19 Aligned_cols=35 Identities=11% Similarity=-0.112 Sum_probs=24.3
Q ss_pred ECccHHHHHHHhhcC-ccEEEEeCCchhhHHHHHHH
Q 041426 9 LRPFVRNFLKKASSM-FEMYVCTMGTQCYATAAVKV 43 (109)
Q Consensus 9 ~RP~~~~FL~~l~~~-fei~i~T~~~~~YA~~i~~~ 43 (109)
.=||+.+||+.|.+. ..+++.||++..=..++++.
T Consensus 15 ~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~ 50 (101)
T PF13344_consen 15 PIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKK 50 (101)
T ss_dssp E-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHH
T ss_pred cCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHH
Confidence 349999999999765 89999999984443444433
No 101
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=82.29 E-value=1.5 Score=36.14 Aligned_cols=73 Identities=8% Similarity=0.057 Sum_probs=50.7
Q ss_pred EEECccHHHHHHHhhc-Cc-cEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCCceeccCcCCCCCCcEEEEcC
Q 041426 7 VKLRPFVRNFLKKASS-MF-EMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDRKNLDLVLSQERGTVILDD 84 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~f-ei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~~~KdL~~l~~~~~~viivDd 84 (109)
-..||++.+.+++|.+ -+ .+++.|+..+.+|..+++.+.-.+ +|.. +. .....+-++.+....+.+++|.|
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~-~f~~-~~-----p~~K~~~i~~l~~~~~~v~~vGD 433 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDE-VHAE-LL-----PEDKLEIVKELREKYGPVAMVGD 433 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChh-hhhc-cC-----cHHHHHHHHHHHhcCCEEEEEeC
Confidence 3579999999999975 57 999999999999999999887652 3421 11 11111122333445578888888
Q ss_pred Cc
Q 041426 85 TE 86 (109)
Q Consensus 85 ~~ 86 (109)
..
T Consensus 434 g~ 435 (536)
T TIGR01512 434 GI 435 (536)
T ss_pred CH
Confidence 75
No 102
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=82.03 E-value=1.8 Score=33.67 Aligned_cols=80 Identities=13% Similarity=0.128 Sum_probs=53.2
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCCCCcccceE-------Eee---cCCCC----Cceecc-C
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRI-------IAQ---EDFKV----KDRKNL-D 70 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~-------~~r---~~~~~----~~~KdL-~ 70 (109)
+.++||+.++|+.|.+ -+.+.|.|+|...+++.+.+.+.-.. .+.+.+ ..+ +.+.. ...+.+ +
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~-~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~ 258 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA-AVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQ 258 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe-EEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHH
Confidence 4578999999999975 58999999999999999998876542 222221 111 00000 011222 3
Q ss_pred cCCCCCCcEEEEcCCch
Q 041426 71 LVLSQERGTVILDDTES 87 (109)
Q Consensus 71 ~l~~~~~~viivDd~~~ 87 (109)
.++-+++.+|.|.|+..
T Consensus 259 ~lgi~~~qtIaVGDg~N 275 (322)
T PRK11133 259 EYEIPLAQTVAIGDGAN 275 (322)
T ss_pred HcCCChhhEEEEECCHH
Confidence 45668899999999873
No 103
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=81.30 E-value=2.4 Score=35.03 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=50.1
Q ss_pred EEECccHHHHHHHhhc-C-ccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCCceeccCcCCCCCCcEEEEcC
Q 041426 7 VKLRPFVRNFLKKASS-M-FEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDRKNLDLVLSQERGTVILDD 84 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~-fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~~~KdL~~l~~~~~~viivDd 84 (109)
-..||++.+.|++|.+ . +++.|-|+..+.+|..+++.+.-. .+|.. +...+ +...++.+ ......+++|.|
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~-~~f~~-~~p~~--K~~~v~~l---~~~~~~v~~vGD 455 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGID-EVHAE-LLPED--KLAIVKEL---QEEGGVVAMVGD 455 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCC-eeecc-CCHHH--HHHHHHHH---HHcCCEEEEEEC
Confidence 3579999999999965 4 899999999999999999998765 34432 11100 00122222 234458888888
Q ss_pred Cc
Q 041426 85 TE 86 (109)
Q Consensus 85 ~~ 86 (109)
..
T Consensus 456 g~ 457 (556)
T TIGR01525 456 GI 457 (556)
T ss_pred Ch
Confidence 76
No 104
>PRK08238 hypothetical protein; Validated
Probab=81.04 E-value=2.6 Score=34.55 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=55.7
Q ss_pred EECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCC--CceeccCcCC--CCCCcEEEE
Q 041426 8 KLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKV--KDRKNLDLVL--SQERGTVIL 82 (109)
Q Consensus 8 ~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~--~~~KdL~~l~--~~~~~viiv 82 (109)
..+|++.++|+++. +-..++|-|++.+.+++++++.+.- |. .+++.++... +..| ...+. ...+.++.+
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----Fd-~Vigsd~~~~~kg~~K-~~~l~~~l~~~~~~yv 145 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----FD-GVFASDGTTNLKGAAK-AAALVEAFGERGFDYA 145 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----CC-EEEeCCCccccCCchH-HHHHHHHhCccCeeEe
Confidence 46899999999995 6689999999999999999998743 43 3444332211 0111 11110 123446778
Q ss_pred cCCc---hhhccCCCCeEEeCc
Q 041426 83 DDTE---SVWSDHTKNLKVVEN 101 (109)
Q Consensus 83 Dd~~---~~~~~~~~N~i~i~~ 101 (109)
.|+. .+|.. .+|.+.|.|
T Consensus 146 GDS~~Dlp~~~~-A~~av~Vn~ 166 (479)
T PRK08238 146 GNSAADLPVWAA-ARRAIVVGA 166 (479)
T ss_pred cCCHHHHHHHHh-CCCeEEECC
Confidence 8877 45553 567776653
No 105
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=75.35 E-value=8.8 Score=28.76 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=53.5
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCC-----------CC-----------
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDF-----------KV----------- 63 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~-----------~~----------- 63 (109)
...-|.+.++++.++ +..-++..|+....+...-++.|--.|--|+++.+..+.. ..
T Consensus 80 ~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~ 159 (252)
T PF11019_consen 80 ELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTG 159 (252)
T ss_pred EEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeC
Confidence 345578889999998 5699999999999999988877644433333322111100 00
Q ss_pred Ccee------ccCcCCCCCCcEEEEcCCchhh
Q 041426 64 KDRK------NLDLVLSQERGTVILDDTESVW 89 (109)
Q Consensus 64 ~~~K------dL~~l~~~~~~viivDd~~~~~ 89 (109)
+.-| =|..++..++.+|+|||+.+.-
T Consensus 160 ~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl 191 (252)
T PF11019_consen 160 GQDKGEVLKYFLDKINQSPKKIIFIDDNKENL 191 (252)
T ss_pred CCccHHHHHHHHHHcCCCCCeEEEEeCCHHHH
Confidence 0111 1344577899999999998543
No 106
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=72.62 E-value=11 Score=28.60 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=48.1
Q ss_pred EECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCC--cccceEEeecCCCCCceeccC--cCCCCCCcEEEE
Q 041426 8 KLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSK--YFNSRIIAQEDFKVKDRKNLD--LVLSQERGTVIL 82 (109)
Q Consensus 8 ~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~--~f~~r~~~r~~~~~~~~KdL~--~l~~~~~~viiv 82 (109)
..-||+.+||+.+. .-..+++.|+.+........+.|...|- .+...++.+++.. -|... .+...-+-++.|
T Consensus 118 ~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~~---~K~~rr~~I~~~y~Ivl~v 194 (266)
T TIGR01533 118 KPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDKS---SKESRRQKVQKDYEIVLLF 194 (266)
T ss_pred CcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCCC---CcHHHHHHHHhcCCEEEEE
Confidence 35699999999995 5678999999987777766655544331 1223455554322 22211 122233448888
Q ss_pred cCCchhh
Q 041426 83 DDTESVW 89 (109)
Q Consensus 83 Dd~~~~~ 89 (109)
.|+..=+
T Consensus 195 GD~~~Df 201 (266)
T TIGR01533 195 GDNLLDF 201 (266)
T ss_pred CCCHHHh
Confidence 8886544
No 107
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=72.08 E-value=5.7 Score=29.66 Aligned_cols=41 Identities=7% Similarity=0.232 Sum_probs=34.8
Q ss_pred EEECccHHHHHHHhh---cCccEEEEeCCchhhHHHHHHHhcCC
Q 041426 7 VKLRPFVRNFLKKAS---SMFEMYVCTMGTQCYATAAVKVLDSN 47 (109)
Q Consensus 7 v~~RP~~~~FL~~l~---~~fei~i~T~~~~~YA~~i~~~lDp~ 47 (109)
+.+.||+.+|++.++ ..+|++|-|.|..-|-+.|++.-.-.
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~ 113 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLR 113 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCc
Confidence 346799999999994 48999999999999999999874433
No 108
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=70.57 E-value=7.6 Score=28.82 Aligned_cols=94 Identities=11% Similarity=0.051 Sum_probs=62.1
Q ss_pred EEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhc-CCCCcccceEEe-ecCCCC------CceeccCcCCCCC-
Q 041426 7 VKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLD-SNSKYFNSRIIA-QEDFKV------KDRKNLDLVLSQE- 76 (109)
Q Consensus 7 v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lD-p~~~~f~~r~~~-r~~~~~------~~~KdL~~l~~~~- 76 (109)
++.=||+..+++.|. .---+.++|++++..++..++.+- .- ..|++-++. ..++.. .+.+=.++|+-++
T Consensus 91 ~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~-~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~ 169 (222)
T KOG2914|consen 91 SILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIF-KNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPP 169 (222)
T ss_pred cccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHH-HhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCc
Confidence 456699999999996 567799999998888877776543 44 356554441 111111 1455566777666
Q ss_pred CcEEEEcCCchhhcc---CCCCeEEeCc
Q 041426 77 RGTVILDDTESVWSD---HTKNLKVVEN 101 (109)
Q Consensus 77 ~~viivDd~~~~~~~---~~~N~i~i~~ 101 (109)
+++++.+|++..... ---++|-++.
T Consensus 170 ~k~lVfeds~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 170 SKCLVFEDSPVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred cceEEECCCHHHHHHHHhcCCeEEEecC
Confidence 999999999965432 2355666654
No 109
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=68.82 E-value=4.9 Score=27.43 Aligned_cols=73 Identities=12% Similarity=0.046 Sum_probs=46.4
Q ss_pred EECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCCceeccCcCCCCCCcEEEEcCCc
Q 041426 8 KLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDRKNLDLVLSQERGTVILDDTE 86 (109)
Q Consensus 8 ~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~~~KdL~~l~~~~~~viivDd~~ 86 (109)
.++|+. -+++|. +.+.+.|.|+..+..+..+++.+.-. .+|... ..-.....+=++.++.+++.++.|.|+.
T Consensus 30 ~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~-~~~~~~----~~k~~~~~~~~~~~~~~~~~~~~vGDs~ 102 (154)
T TIGR01670 30 NVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT-HLYQGQ----SNKLIAFSDILEKLALAPENVAYIGDDL 102 (154)
T ss_pred echhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC-EEEecc----cchHHHHHHHHHHcCCCHHHEEEECCCH
Confidence 344544 578886 46899999999999999999887655 344321 0000001122244556778899998886
Q ss_pred h
Q 041426 87 S 87 (109)
Q Consensus 87 ~ 87 (109)
.
T Consensus 103 ~ 103 (154)
T TIGR01670 103 I 103 (154)
T ss_pred H
Confidence 3
No 110
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=65.33 E-value=10 Score=28.64 Aligned_cols=94 Identities=17% Similarity=0.192 Sum_probs=52.5
Q ss_pred eEEECccHHHHHHHhhcC-ccEEEEeCCchhhHHHHHHHh---cCCCCcccceEEeecCCCC---------CceeccCcC
Q 041426 6 LVKLRPFVRNFLKKASSM-FEMYVCTMGTQCYATAAVKVL---DSNSKYFNSRIIAQEDFKV---------KDRKNLDLV 72 (109)
Q Consensus 6 ~v~~RP~~~~FL~~l~~~-fei~i~T~~~~~YA~~i~~~l---Dp~~~~f~~r~~~r~~~~~---------~~~KdL~~l 72 (109)
-+.+|.|+.+|++.|.+. -=+.||+||-.+-..++++.- -|+-+++++...-.++... .+-|+-+.+
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~l 167 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESAL 167 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHHH
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCcccc
Confidence 367999999999999865 569999999999999998763 3343344443332221110 123443222
Q ss_pred --------CCCCCcEEEEcCCch-hhcc----CCCCeEEe
Q 041426 73 --------LSQERGTVILDDTES-VWSD----HTKNLKVV 99 (109)
Q Consensus 73 --------~~~~~~viivDd~~~-~~~~----~~~N~i~i 99 (109)
-...+.||++-|+.. .-+. ..+|+|.|
T Consensus 168 ~~~~~~~~~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkI 207 (246)
T PF05822_consen 168 EDSPYFKQLKKRTNVLLLGDSLGDLHMADGVPDEENVLKI 207 (246)
T ss_dssp TTHHHHHCTTT--EEEEEESSSGGGGTTTT-S--SEEEEE
T ss_pred cCchHHHHhccCCcEEEecCccCChHhhcCCCccccEEEE
Confidence 135778999999873 3332 34666665
No 111
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=62.57 E-value=15 Score=27.36 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=45.6
Q ss_pred EEECccHHHHHHHh-hcCccEEEEeCC----chhhHHHHHHHhcC-CCCcccceEEeecCCCCCceeccCcCCCCCCcEE
Q 041426 7 VKLRPFVRNFLKKA-SSMFEMYVCTMG----TQCYATAAVKVLDS-NSKYFNSRIIAQEDFKVKDRKNLDLVLSQERGTV 80 (109)
Q Consensus 7 v~~RP~~~~FL~~l-~~~fei~i~T~~----~~~YA~~i~~~lDp-~~~~f~~r~~~r~~~~~~~~KdL~~l~~~~~~vi 80 (109)
...-||+.+||+.+ .+-++|++-|+- ....++.+++.+.- ...+|. -++..+.. ...-|. ..+ ....-+|
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~-vil~gd~~-~K~~K~-~~l-~~~~i~I 188 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNP-VIFAGDKP-GQYTKT-QWL-KKKNIRI 188 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCccccee-EEEcCCCC-CCCCHH-HHH-HhcCCeE
Confidence 44556699999999 678999999994 45688888875543 223453 24443322 111111 111 1233488
Q ss_pred EEcCCch
Q 041426 81 ILDDTES 87 (109)
Q Consensus 81 ivDd~~~ 87 (109)
++.|+..
T Consensus 189 ~IGDs~~ 195 (237)
T PRK11009 189 FYGDSDN 195 (237)
T ss_pred EEcCCHH
Confidence 8998864
No 112
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=62.10 E-value=15 Score=27.29 Aligned_cols=76 Identities=11% Similarity=0.087 Sum_probs=46.5
Q ss_pred CccHHHHHHHhhc-CccEEEEeCC----chhhHHHHHHHhcCCCCcccceEEeecCCCC-CceeccCcCCCCCCcEEEEc
Q 041426 10 RPFVRNFLKKASS-MFEMYVCTMG----TQCYATAAVKVLDSNSKYFNSRIIAQEDFKV-KDRKNLDLVLSQERGTVILD 83 (109)
Q Consensus 10 RP~~~~FL~~l~~-~fei~i~T~~----~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~-~~~KdL~~l~~~~~~viivD 83 (109)
.|++.+||+.+.+ -..++|.|+. ...++..+++.+.-.+ +|. -++..+.... ..-|. ..+ .....++.+-
T Consensus 116 ~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~-~f~-~i~~~d~~~~~Kp~~~-~~l-~~~~i~i~vG 191 (237)
T TIGR01672 116 KEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPA-MNP-VIFAGDKPGQYQYTKT-QWI-QDKNIRIHYG 191 (237)
T ss_pred hhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCch-hee-EEECCCCCCCCCCCHH-HHH-HhCCCeEEEe
Confidence 3449999999965 6899999998 6679999998776553 442 3444333211 11111 111 1233478898
Q ss_pred CCchhh
Q 041426 84 DTESVW 89 (109)
Q Consensus 84 d~~~~~ 89 (109)
|+..=.
T Consensus 192 Ds~~DI 197 (237)
T TIGR01672 192 DSDNDI 197 (237)
T ss_pred CCHHHH
Confidence 886433
No 113
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=60.88 E-value=11 Score=24.11 Aligned_cols=35 Identities=9% Similarity=0.234 Sum_probs=28.5
Q ss_pred CccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhc
Q 041426 10 RPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLD 45 (109)
Q Consensus 10 RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lD 45 (109)
|-.+++.+..|..-.++.+||+++ +|++++.+.|.
T Consensus 7 ~~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~ 41 (94)
T cd02974 7 KQQLKAYLERLENPVELVASLDDS-EKSAELLELLE 41 (94)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHH
Confidence 445778888888999999999987 88888877763
No 114
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=60.05 E-value=19 Score=25.95 Aligned_cols=86 Identities=17% Similarity=0.198 Sum_probs=58.2
Q ss_pred CccHHHHHHHhhcC-ccEEEEeCCchhhHHHHHHHhcCCCCcccceEEe-ecCCCCCceeccCcCCCCCCcEEEEcCCc-
Q 041426 10 RPFVRNFLKKASSM-FEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIA-QEDFKVKDRKNLDLVLSQERGTVILDDTE- 86 (109)
Q Consensus 10 RP~~~~FL~~l~~~-fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~-r~~~~~~~~KdL~~l~~~~~~viivDd~~- 86 (109)
-|-+++-+.++.+. --++|.+|.++.-+..++..||-+- +++ .--......|=|...+-+.++|++|.|+-
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~f------i~~A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~ 121 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPF------IYRAKKPFGRAFRRALKEMNLPPEEVVMVGDQLF 121 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCce------eecccCccHHHHHHHHHHcCCChhHEEEEcchhh
Confidence 36678888888755 8899999999999999999888762 111 11111123455666778999999999986
Q ss_pred -hhhccCCCC--eEEeCc
Q 041426 87 -SVWSDHTKN--LKVVEN 101 (109)
Q Consensus 87 -~~~~~~~~N--~i~i~~ 101 (109)
++...+..+ .|.|+|
T Consensus 122 TDVlggnr~G~~tIlV~P 139 (175)
T COG2179 122 TDVLGGNRAGMRTILVEP 139 (175)
T ss_pred hhhhcccccCcEEEEEEE
Confidence 566554332 445544
No 115
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=59.47 E-value=49 Score=23.06 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=19.8
Q ss_pred cHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcc
Q 041426 12 FVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYF 51 (109)
Q Consensus 12 ~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f 51 (109)
.+.++|+++. +.-.|++|-+|.+. ..+++.++....++
T Consensus 56 ~l~~~L~~~~~~gk~I~~yGA~~kg--~tlln~~g~~~~~I 94 (160)
T PF08484_consen 56 ELREFLEKLKAEGKRIAGYGAGAKG--NTLLNYFGLDNDLI 94 (160)
T ss_dssp HHHHHHHHHHHTT--EEEE---SHH--HHHHHHHT--TTTS
T ss_pred HHHHHHHHHHHcCCEEEEECcchHH--HHHHHHhCCCccee
Confidence 4567777775 44559999998875 44566666654433
No 116
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=54.51 E-value=13 Score=23.05 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=19.8
Q ss_pred ccEEEEeCCchhhHHHHHHHhcC
Q 041426 24 FEMYVCTMGTQCYATAAVKVLDS 46 (109)
Q Consensus 24 fei~i~T~~~~~YA~~i~~~lDp 46 (109)
.++.+|-.|+.+|.+.|.+.|+.
T Consensus 4 a~~SLYPmg~~dy~~~I~~~i~~ 26 (81)
T PF07615_consen 4 AQFSLYPMGTDDYMDVILGAIDR 26 (81)
T ss_dssp EEEEEEETTSTTHHHHHHHHHHH
T ss_pred EEEEecccCCccHHHHHHHHHHH
Confidence 47899999999999999887754
No 117
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=52.59 E-value=38 Score=24.01 Aligned_cols=78 Identities=13% Similarity=0.157 Sum_probs=46.9
Q ss_pred EECccHHHHHHHhhcCcc---EEEEeCCc-------hhhHHHHHHHhcCCCCcccceEEeecCCCCCceecc-CcC----
Q 041426 8 KLRPFVRNFLKKASSMFE---MYVCTMGT-------QCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDRKNL-DLV---- 72 (109)
Q Consensus 8 ~~RP~~~~FL~~l~~~fe---i~i~T~~~-------~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~~~KdL-~~l---- 72 (109)
..-|.+.+.++++.+.|- |.|.||+. ..=|..+-+.|.-. .+.+ ..-+....+++ +.+
T Consensus 59 ~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp--vl~h-----~~kKP~~~~~i~~~~~~~~ 131 (168)
T PF09419_consen 59 EIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP--VLRH-----RAKKPGCFREILKYFKCQK 131 (168)
T ss_pred cCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc--EEEe-----CCCCCccHHHHHHHHhhcc
Confidence 455778888999987663 99999984 55677777766522 2222 11111111111 122
Q ss_pred -CCCCCcEEEEcCCc--hhhccC
Q 041426 73 -LSQERGTVILDDTE--SVWSDH 92 (109)
Q Consensus 73 -~~~~~~viivDd~~--~~~~~~ 92 (109)
...++.+++|.|+- ++...+
T Consensus 132 ~~~~p~eiavIGDrl~TDVl~gN 154 (168)
T PF09419_consen 132 VVTSPSEIAVIGDRLFTDVLMGN 154 (168)
T ss_pred CCCCchhEEEEcchHHHHHHHhh
Confidence 23588999999986 555544
No 118
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=51.64 E-value=14 Score=27.79 Aligned_cols=80 Identities=13% Similarity=-0.041 Sum_probs=51.4
Q ss_pred eEEECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCC-----CceeccCcCCCCCCcE
Q 041426 6 LVKLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKV-----KDRKNLDLVLSQERGT 79 (109)
Q Consensus 6 ~v~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~-----~~~KdL~~l~~~~~~v 79 (109)
+....|-+ ++|++++ +-+.+.+.|+....+= .++..+.-. .+|..-+.|-..... -+.+=|+.++..++.+
T Consensus 112 ~~~~~~~~-~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~-~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~ 188 (237)
T KOG3085|consen 112 WKYLDGMQ-ELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLS-AYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEEC 188 (237)
T ss_pred ceeccHHH-HHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHH-HhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHe
Confidence 33444444 9999997 4578999999998876 555444444 466553433111111 1445566777789999
Q ss_pred EEEcCCchh
Q 041426 80 VILDDTESV 88 (109)
Q Consensus 80 iivDd~~~~ 88 (109)
|.|||+...
T Consensus 189 vhIgD~l~n 197 (237)
T KOG3085|consen 189 VHIGDLLEN 197 (237)
T ss_pred EEecCcccc
Confidence 999998765
No 119
>PHA03050 glutaredoxin; Provisional
Probab=47.23 E-value=39 Score=21.95 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=31.0
Q ss_pred HHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCCC
Q 041426 14 RNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSNS 48 (109)
Q Consensus 14 ~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~~ 48 (109)
.+|++++-+.-.|.|||.+.=.|+..+.+.|+-.+
T Consensus 3 ~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~ 37 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFS 37 (108)
T ss_pred HHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcC
Confidence 57888888888999999999999999999998765
No 120
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=46.46 E-value=32 Score=26.27 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=27.3
Q ss_pred CccHHHHHHHhhcC-ccEEEEeCCchhhHHHHHHHh
Q 041426 10 RPFVRNFLKKASSM-FEMYVCTMGTQCYATAAVKVL 44 (109)
Q Consensus 10 RP~~~~FL~~l~~~-fei~i~T~~~~~YA~~i~~~l 44 (109)
=||..+||+.|.+. =.+++-||++..=+..+.+.|
T Consensus 26 ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L 61 (269)
T COG0647 26 IPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARL 61 (269)
T ss_pred CchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 38999999999765 889999999876555555444
No 121
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=45.95 E-value=23 Score=24.46 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=21.5
Q ss_pred eEEECccHHHHHHHhh-cCccEEEEeCC
Q 041426 6 LVKLRPFVRNFLKKAS-SMFEMYVCTMG 32 (109)
Q Consensus 6 ~v~~RP~~~~FL~~l~-~~fei~i~T~~ 32 (109)
+..+-|++.+-|+++. +-|.|+|+||.
T Consensus 27 ~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 27 WKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp GEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred hhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 4566789999999996 58999999997
No 122
>PHA01818 hypothetical protein
Probab=45.33 E-value=32 Score=27.57 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=27.4
Q ss_pred HHHh----hcCccEEEEeCCchhhHHHHHHHhcCCC
Q 041426 17 LKKA----SSMFEMYVCTMGTQCYATAAVKVLDSNS 48 (109)
Q Consensus 17 L~~l----~~~fei~i~T~~~~~YA~~i~~~lDp~~ 48 (109)
|..+ +.-|.+.|||+..+.+-.+|++.||..+
T Consensus 237 ls~~~~~~~~sf~llvyt~~~ktf~~~i~~~~~~~~ 272 (458)
T PHA01818 237 LSSIRDDGSASFPLLVYTSDSKTFQQAIIDHIDRTG 272 (458)
T ss_pred HhhcccCCCCceeEEEEecCCchHHHHHHHHHhccC
Confidence 5556 5789999999999999999999988654
No 123
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=41.96 E-value=18 Score=25.36 Aligned_cols=59 Identities=12% Similarity=0.068 Sum_probs=39.7
Q ss_pred cCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCC-ceeccCcCCCCCCcEEEEcCCc
Q 041426 22 SMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVK-DRKNLDLVLSQERGTVILDDTE 86 (109)
Q Consensus 22 ~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~-~~KdL~~l~~~~~~viivDd~~ 86 (109)
+.+++.|-|+.....+..+++.+.-. .+|.+ .+.... ..+=+..++.+++.++.|.|+.
T Consensus 63 ~Gi~v~I~T~~~~~~v~~~l~~lgl~-~~f~g-----~~~k~~~l~~~~~~~gl~~~ev~~VGDs~ 122 (183)
T PRK09484 63 SGIEVAIITGRKSKLVEDRMTTLGIT-HLYQG-----QSNKLIAFSDLLEKLAIAPEQVAYIGDDL 122 (183)
T ss_pred CCCEEEEEeCCCcHHHHHHHHHcCCc-eeecC-----CCcHHHHHHHHHHHhCCCHHHEEEECCCH
Confidence 67899999999999999999987644 23421 111111 1222344567788999998886
No 124
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=41.03 E-value=36 Score=25.33 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=37.0
Q ss_pred cceeEEECccHHHHHHHhhc---CccEEEEeCCchhhHHHHHHHhcC
Q 041426 3 NDKLVKLRPFVRNFLKKASS---MFEMYVCTMGTQCYATAAVKVLDS 46 (109)
Q Consensus 3 ~~~~v~~RP~~~~FL~~l~~---~fei~i~T~~~~~YA~~i~~~lDp 46 (109)
++++|+++-.+++||+.+++ -||+..++.+ ++|=..+-..-++
T Consensus 127 PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~-~~Y~~~l~~~Y~~ 172 (216)
T COG1428 127 PDLLIYLDASLETLLRRIAKRGRPFEIDNFDEN-KDYLKDLHRRYDD 172 (216)
T ss_pred CCEEEEEeCCHHHHHHHHHHhCCCcccccccch-HHHHHHHHHHHHH
Confidence 67899999999999999974 5999999999 8888888776554
No 125
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.65 E-value=33 Score=21.11 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=15.7
Q ss_pred Ccc-HHHHHHHhhcCccEEE
Q 041426 10 RPF-VRNFLKKASSMFEMYV 28 (109)
Q Consensus 10 RP~-~~~FL~~l~~~fei~i 28 (109)
||| +.+|++.+.+.-+|.-
T Consensus 11 rpGal~~Fl~~l~p~~~ITe 30 (81)
T cd04907 11 RPGALKKFLNELLPKWNITL 30 (81)
T ss_pred CCCHHHHHHHHhCCCCeEeE
Confidence 899 8999999987666665
No 126
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=40.43 E-value=1.1e+02 Score=21.95 Aligned_cols=79 Identities=14% Similarity=0.091 Sum_probs=50.1
Q ss_pred EECccHHHHHHHh-hcCccEEEEeCCc----h--------hhHHHHHHHhcCCCCcccceEEeecC----CCCC------
Q 041426 8 KLRPFVRNFLKKA-SSMFEMYVCTMGT----Q--------CYATAAVKVLDSNSKYFNSRIIAQED----FKVK------ 64 (109)
Q Consensus 8 ~~RP~~~~FL~~l-~~~fei~i~T~~~----~--------~YA~~i~~~lDp~~~~f~~r~~~r~~----~~~~------ 64 (109)
.+.||+.+=|..+ ..-|.++|+||.+ . .+-+.+.+.|--.|.-|...++..+. |..+
T Consensus 31 ~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm 110 (181)
T COG0241 31 QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGM 110 (181)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHH
Confidence 4678888888888 5789999999944 2 23344556666666666666665431 2111
Q ss_pred ceeccCcCCCCCCcEEEEcCCc
Q 041426 65 DRKNLDLVLSQERGTVILDDTE 86 (109)
Q Consensus 65 ~~KdL~~l~~~~~~viivDd~~ 86 (109)
...=++..+.++++.++|-|+.
T Consensus 111 ~~~~~~~~~iD~~~s~~VGD~~ 132 (181)
T COG0241 111 LLSALKEYNIDLSRSYVVGDRL 132 (181)
T ss_pred HHHHHHHhCCCccceEEecCcH
Confidence 1111233457889999999985
No 127
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=39.56 E-value=55 Score=25.77 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=30.9
Q ss_pred eeEEECc-cHHHHHHHhhc------CccEEEEeCCchhhHHHHHHHh
Q 041426 5 KLVKLRP-FVRNFLKKASS------MFEMYVCTMGTQCYATAAVKVL 44 (109)
Q Consensus 5 ~~v~~RP-~~~~FL~~l~~------~fei~i~T~~~~~YA~~i~~~l 44 (109)
+.++-|| ++++-|+.|.+ .++|+|+-.|..+-+..+++..
T Consensus 6 v~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~ 52 (334)
T cd02514 6 VIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSF 52 (334)
T ss_pred EEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhh
Confidence 4678899 69999998864 5899999999877656665443
No 128
>PRK10671 copA copper exporting ATPase; Provisional
Probab=39.15 E-value=48 Score=28.91 Aligned_cols=40 Identities=18% Similarity=0.105 Sum_probs=35.2
Q ss_pred EECccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHhcCC
Q 041426 8 KLRPFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVLDSN 47 (109)
Q Consensus 8 ~~RP~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~lDp~ 47 (109)
..||++.+.|+.+. ..+.+.+.|...+..|..+++.+.-.
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~ 690 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGID 690 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 46999999999996 46899999999999999999987654
No 129
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=38.93 E-value=47 Score=28.69 Aligned_cols=40 Identities=18% Similarity=0.063 Sum_probs=36.0
Q ss_pred EECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCC
Q 041426 8 KLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSN 47 (109)
Q Consensus 8 ~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~ 47 (109)
.+||++.+.++.|.+ ..++++.|...+.-|..+++.+.-.
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~ 608 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGID 608 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 679999999999964 6999999999999999999988754
No 130
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.63 E-value=45 Score=25.58 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=35.5
Q ss_pred EEECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHhc
Q 041426 7 VKLRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVLD 45 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lD 45 (109)
.++-||.++=++.+.....-+|-+.+-..|+..++..|.
T Consensus 82 a~lvPgA~etm~~l~~~~tp~v~STSY~qy~~r~a~~ig 120 (315)
T COG4030 82 AKLVPGAEETMATLQERWTPVVISTSYTQYLRRTASMIG 120 (315)
T ss_pred cccCCChHHHHHHHhccCCceEEeccHHHHHHHHHHhcC
Confidence 467899999999999999999999999999999998875
No 131
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=38.51 E-value=24 Score=29.13 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.0
Q ss_pred ECcc-HHHHHHHhhcCccEEEEe
Q 041426 9 LRPF-VRNFLKKASSMFEMYVCT 30 (109)
Q Consensus 9 ~RP~-~~~FL~~l~~~fei~i~T 30 (109)
-||| |.+||..|.+..+|..|-
T Consensus 428 erpgaL~~Fl~~l~~~~~It~f~ 450 (499)
T TIGR01124 428 ERPGALLRFLNTLQGYWNISLFH 450 (499)
T ss_pred CCccHHHHHHHhcCCCCceeeEE
Confidence 4999 999999999988887764
No 132
>CHL00163 ycf65 putative ribosomal protein 3; Validated
Probab=36.84 E-value=24 Score=23.16 Aligned_cols=30 Identities=7% Similarity=0.049 Sum_probs=19.2
Q ss_pred EEEEcCCchhhccC--CCCeEEeCcccccccC
Q 041426 79 TVILDDTESVWSDH--TKNLKVVENMTTLGTK 108 (109)
Q Consensus 79 viivDd~~~~~~~~--~~N~i~i~~~~~~~~~ 108 (109)
++.++++-.+-.+| ..+.+|+.+|.||+.+
T Consensus 8 vlWl~~~iaiAvDq~v~~~t~PlT~yfFWPr~ 39 (99)
T CHL00163 8 VLWLENNIGIAVDQIVGNGTSPLTSYFFWPRT 39 (99)
T ss_pred EEEecCceEEEEeeeeCCCCccCcceeecCCc
Confidence 44455444433322 4668999999999865
No 133
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=36.44 E-value=23 Score=24.87 Aligned_cols=61 Identities=7% Similarity=0.013 Sum_probs=40.3
Q ss_pred hcCccEEEEeCCchhhHHHHHHHhcCCCCcccceEEeecCCCCCceeccCcCCCCCCcEEEEcCCc
Q 041426 21 SSMFEMYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDRKNLDLVLSQERGTVILDDTE 86 (109)
Q Consensus 21 ~~~fei~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~~~KdL~~l~~~~~~viivDd~~ 86 (109)
.+.+.+.|.|+++..++..+++.+.-. .+|... .. -......=++.++-+++.++.|.|++
T Consensus 48 ~~Gi~laIiT~k~~~~~~~~l~~lgi~-~~f~~~---kp-kp~~~~~~~~~l~~~~~ev~~iGD~~ 108 (169)
T TIGR02726 48 LCGIDVAIITSKKSGAVRHRAEELKIK-RFHEGI---KK-KTEPYAQMLEEMNISDAEVCYVGDDL 108 (169)
T ss_pred HCCCEEEEEECCCcHHHHHHHHHCCCc-EEEecC---CC-CHHHHHHHHHHcCcCHHHEEEECCCH
Confidence 356899999999999999999988655 344321 00 00011122334566778899999987
No 134
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=36.00 E-value=43 Score=21.59 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=25.4
Q ss_pred EEECccHHHHHHHhhc-CccEEEEeCCchh-----hHHHHHHHhcCCC
Q 041426 7 VKLRPFVRNFLKKASS-MFEMYVCTMGTQC-----YATAAVKVLDSNS 48 (109)
Q Consensus 7 v~~RP~~~~FL~~l~~-~fei~i~T~~~~~-----YA~~i~~~lDp~~ 48 (109)
..-||++.++|+.+.. .++++|.+.-++- -+..+++.|.-.|
T Consensus 48 ~~~R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g 95 (137)
T cd00338 48 LVDRPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG 95 (137)
T ss_pred ccCCHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC
Confidence 3469999999999873 5665555544322 2334555555443
No 135
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=35.98 E-value=54 Score=22.52 Aligned_cols=25 Identities=16% Similarity=0.025 Sum_probs=15.0
Q ss_pred CccHHHHHHHhhc-CccEEEEeCCch
Q 041426 10 RPFVRNFLKKASS-MFEMYVCTMGTQ 34 (109)
Q Consensus 10 RP~~~~FL~~l~~-~fei~i~T~~~~ 34 (109)
++.+.++++.+.+ -+.+.|+|+++.
T Consensus 74 ~~~l~~ll~~lk~~Gl~i~l~Tg~~~ 99 (147)
T TIGR02826 74 REALLSLLKIFKEKGLKTCLYTGLEP 99 (147)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 3456666666653 366777776554
No 136
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=35.77 E-value=66 Score=23.96 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCccEEEEeCC----------chhhHHHHHHHhcCCCCcc
Q 041426 13 VRNFLKKASSMFEMYVCTMG----------TQCYATAAVKVLDSNSKYF 51 (109)
Q Consensus 13 ~~~FL~~l~~~fei~i~T~~----------~~~YA~~i~~~lDp~~~~f 51 (109)
..+||+...+.|+++|..+. +.++-+.+.+.|-|+|.+.
T Consensus 135 ~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv 183 (270)
T TIGR00417 135 GFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFV 183 (270)
T ss_pred hHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEE
Confidence 35677777788999987554 4566677888999998754
No 137
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=35.68 E-value=59 Score=21.88 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=32.0
Q ss_pred EECccHHHHHHHh-hcCccEEEEeCCchhhHH------------HHHHHhcCCC
Q 041426 8 KLRPFVRNFLKKA-SSMFEMYVCTMGTQCYAT------------AAVKVLDSNS 48 (109)
Q Consensus 8 ~~RP~~~~FL~~l-~~~fei~i~T~~~~~YA~------------~i~~~lDp~~ 48 (109)
...|.+.+-|+++ .+-++|++.|+-...... .+.+.|+-++
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ 77 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHN 77 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcC
Confidence 3566778888888 578999999988887766 6777887765
No 138
>PF00239 Resolvase: Resolvase, N terminal domain; InterPro: IPR006119 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA, and a C-terminal helix-turn-helix DNA-binding domain IPR006120 from INTERPRO. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 3PLO_X 3BVP_B 2RSL_C 1ZR2_A 2GM4_B 2GM5_D 1ZR4_A 1GDT_B 1HX7_A 1GHT_A ....
Probab=35.06 E-value=29 Score=22.52 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=17.4
Q ss_pred CccHHHHHHHhhcCccEEEEeCC
Q 041426 10 RPFVRNFLKKASSMFEMYVCTMG 32 (109)
Q Consensus 10 RP~~~~FL~~l~~~fei~i~T~~ 32 (109)
||++.++|+.+.. ++++|...-
T Consensus 47 R~~~~~ll~~~~~-~d~ivv~~~ 68 (141)
T PF00239_consen 47 RPGFQELLEDIES-GDVIVVYDL 68 (141)
T ss_dssp CHHHHHHHHHHHT-EEEEEESSH
T ss_pred ccceeeecccccc-cceEEEEec
Confidence 9999999999988 676655543
No 139
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=33.68 E-value=26 Score=19.89 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=15.8
Q ss_pred eCCchhhHHHHHHHhcCCC
Q 041426 30 TMGTQCYATAAVKVLDSNS 48 (109)
Q Consensus 30 T~~~~~YA~~i~~~lDp~~ 48 (109)
+..++.||-++++.+|-.|
T Consensus 20 lg~sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 20 LGLSRKYAIPLLEYLDREG 38 (50)
T ss_dssp HTS-HHHHHHHHHHHHHTT
T ss_pred HCccHHHHHHHHHHHhccC
Confidence 3568999999999999886
No 140
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=33.56 E-value=1.2e+02 Score=23.76 Aligned_cols=79 Identities=6% Similarity=0.156 Sum_probs=42.7
Q ss_pred cceeEEECccHHHHHHHhhcCcc----EEEEeCCchhhHHHHHH-HhcCC---CCcccceEEeecCCCC---CceeccCc
Q 041426 3 NDKLVKLRPFVRNFLKKASSMFE----MYVCTMGTQCYATAAVK-VLDSN---SKYFNSRIIAQEDFKV---KDRKNLDL 71 (109)
Q Consensus 3 ~~~~v~~RP~~~~FL~~l~~~fe----i~i~T~~~~~YA~~i~~-~lDp~---~~~f~~r~~~r~~~~~---~~~KdL~~ 71 (109)
.++.+.+||.+..=+..+-+.|. ++|| ..+|+..+++ ++|-. +.-...|-+++-.... ...|+|
T Consensus 101 ~~~~l~l~P~l~~Ai~diI~~~~Wr~~~~iY---d~d~gl~~Lq~L~~~~~~~~~~V~~~~v~~~~~~~~~~~~l~el-- 175 (372)
T cd06387 101 VQFVIQMRPALKGAILSLLAHYKWEKFVYLY---DTERGFSILQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEM-- 175 (372)
T ss_pred CceEEEEChhHHHHHHHHHHhcCCCEEEEEe---cCchhHHHHHHHHHhhccCCceEEEEEeccCCchHHHHHHHHHh--
Confidence 46789999997766666667776 5566 3366666664 44432 2111122221111011 123333
Q ss_pred CCCCCCcEEEEcCCch
Q 041426 72 VLSQERGTVILDDTES 87 (109)
Q Consensus 72 l~~~~~~viivDd~~~ 87 (109)
.....+++|||=+++
T Consensus 176 -~~~~~r~iIld~s~~ 190 (372)
T cd06387 176 -DRRQEKRYLIDCEVE 190 (372)
T ss_pred -ccccceEEEEECCHH
Confidence 345678888887765
No 141
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=33.27 E-value=83 Score=22.28 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=25.8
Q ss_pred cHHHHHHHhhcC-ccEEEEeCCchhhHHHHHH
Q 041426 12 FVRNFLKKASSM-FEMYVCTMGTQCYATAAVK 42 (109)
Q Consensus 12 ~~~~FL~~l~~~-fei~i~T~~~~~YA~~i~~ 42 (109)
.+.+.|+.+... .||+|.-+|+.+-..+|++
T Consensus 14 ~l~~~l~sl~~~~~eiivvD~gStD~t~~i~~ 45 (229)
T cd02511 14 NIERCLESVKWAVDEIIVVDSGSTDRTVEIAK 45 (229)
T ss_pred HHHHHHHHHhcccCEEEEEeCCCCccHHHHHH
Confidence 477888888766 7999999999888888877
No 142
>KOG0693 consensus Myo-inositol-1-phosphate synthase [Lipid transport and metabolism]
Probab=33.16 E-value=17 Score=29.49 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=23.5
Q ss_pred ECccHHHHHHHhhcCccEEEEeCCchhhHHHH
Q 041426 9 LRPFVRNFLKKASSMFEMYVCTMGTQCYATAA 40 (109)
Q Consensus 9 ~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i 40 (109)
+|--+++|-++-.----|++||+.+.+|++.+
T Consensus 209 Ir~Dir~Fke~~~ldkViVLWTANTERy~~V~ 240 (512)
T KOG0693|consen 209 IRKDIREFKEENKLDKVIVLWTANTERYSNVI 240 (512)
T ss_pred HHHHHHHHHHhcCCceEEEEEecCcceeeccc
Confidence 34456677766666677999999999997543
No 143
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=32.20 E-value=1.2e+02 Score=21.07 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=26.1
Q ss_pred ccHHHHHHHhh------cCccEEEEeCCchhhHHHHHHHhcC
Q 041426 11 PFVRNFLKKAS------SMFEMYVCTMGTQCYATAAVKVLDS 46 (109)
Q Consensus 11 P~~~~FL~~l~------~~fei~i~T~~~~~YA~~i~~~lDp 46 (109)
+.+.+.|+.+. ..|||+|.-+++.+-..++++.+..
T Consensus 13 ~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~ 54 (249)
T cd02525 13 KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAA 54 (249)
T ss_pred hhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHh
Confidence 45677777774 2479999998888877777776643
No 144
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=31.75 E-value=53 Score=22.69 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=12.4
Q ss_pred EEEEeCC------chhhHHHHHHHhcCC
Q 041426 26 MYVCTMG------TQCYATAAVKVLDSN 47 (109)
Q Consensus 26 i~i~T~~------~~~YA~~i~~~lDp~ 47 (109)
|+|||++ +-+|...+.++|+-.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~ 29 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF 29 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC
Confidence 4566666 555655555555444
No 145
>PRK10824 glutaredoxin-4; Provisional
Probab=31.29 E-value=92 Score=20.63 Aligned_cols=36 Identities=11% Similarity=0.202 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCccEEEEeCCch-----hhHHHHHHHhcCCC
Q 041426 13 VRNFLKKASSMFEMYVCTMGTQ-----CYATAAVKVLDSNS 48 (109)
Q Consensus 13 ~~~FL~~l~~~fei~i~T~~~~-----~YA~~i~~~lDp~~ 48 (109)
+.++++++-+--.|+||+.|++ .|+..+.++|+..+
T Consensus 4 ~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~ 44 (115)
T PRK10824 4 TIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACG 44 (115)
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcC
Confidence 4678888888899999999854 58888888887665
No 146
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=31.07 E-value=1.1e+02 Score=19.10 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=23.7
Q ss_pred cHHHHHHHhh----cCccEEEEeCCchhhHHHHHHHhc
Q 041426 12 FVRNFLKKAS----SMFEMYVCTMGTQCYATAAVKVLD 45 (109)
Q Consensus 12 ~~~~FL~~l~----~~fei~i~T~~~~~YA~~i~~~lD 45 (109)
.+.+.|+.+. +.+|++|..+++.+-+..++...-
T Consensus 11 ~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~ 48 (180)
T cd06423 11 VIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELA 48 (180)
T ss_pred HHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHh
Confidence 3555555553 368999999999887777776543
No 147
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=30.38 E-value=65 Score=25.99 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=27.7
Q ss_pred ECccHHHHHHHhhc-CccEEE-EeCCc----hhhHHHHHHH-hcC
Q 041426 9 LRPFVRNFLKKASS-MFEMYV-CTMGT----QCYATAAVKV-LDS 46 (109)
Q Consensus 9 ~RP~~~~FL~~l~~-~fei~i-~T~~~----~~YA~~i~~~-lDp 46 (109)
.+|++.+.|+.+.+ .+-+.| +|+|+ ++-++.+++. +||
T Consensus 87 ~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~ 131 (404)
T TIGR03278 87 CYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVRE 131 (404)
T ss_pred cCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCE
Confidence 57899999999986 566777 69964 4567777665 554
No 148
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=30.16 E-value=1.1e+02 Score=23.32 Aligned_cols=37 Identities=14% Similarity=0.308 Sum_probs=31.0
Q ss_pred ECccHHHHHHHhhc--CccEEEEeCCchhhHHHHHHHhc
Q 041426 9 LRPFVRNFLKKASS--MFEMYVCTMGTQCYATAAVKVLD 45 (109)
Q Consensus 9 ~RP~~~~FL~~l~~--~fei~i~T~~~~~YA~~i~~~lD 45 (109)
.-||+-+.++.+++ .||++|-+.+..-+.++++++.+
T Consensus 85 ~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~ 123 (256)
T KOG3120|consen 85 IVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAG 123 (256)
T ss_pred CCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHcc
Confidence 35888888888763 48999999999999999998754
No 149
>PRK09224 threonine dehydratase; Reviewed
Probab=29.64 E-value=44 Score=27.56 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=20.8
Q ss_pred ECcc-HHHHHHHhhcCccEEEE--eCCchhh
Q 041426 9 LRPF-VRNFLKKASSMFEMYVC--TMGTQCY 36 (109)
Q Consensus 9 ~RP~-~~~FL~~l~~~fei~i~--T~~~~~Y 36 (109)
-||| +.+||+.|.+..+|..| ++..+++
T Consensus 432 erpGal~~Fl~~l~~~~~It~f~Yr~~~~~~ 462 (504)
T PRK09224 432 ERPGALLKFLSTLGTHWNISLFHYRNHGADY 462 (504)
T ss_pred CCCCHHHHHHHhcCCCCeeEEEEEccCCccc
Confidence 3999 99999999998887654 4444444
No 150
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=29.25 E-value=47 Score=26.27 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCccEEEEeCCchhhHHHHHHH
Q 041426 13 VRNFLKKASSMFEMYVCTMGTQCYATAAVKV 43 (109)
Q Consensus 13 ~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~ 43 (109)
=++||++++.+.||-+|......=.++|++-
T Consensus 260 K~~fL~e~s~h~eiL~Ydwt~~gdt~~VVED 290 (393)
T KOG3877|consen 260 KDSFLREYSNHSEILAYDWTKPGDTDAVVED 290 (393)
T ss_pred HHHHHHHHhhhhheeeeecccCCCchhHHHh
Confidence 3689999999999999988887778888753
No 151
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=28.90 E-value=23 Score=22.49 Aligned_cols=30 Identities=10% Similarity=0.015 Sum_probs=20.0
Q ss_pred ccHHHHHHHhhcC---ccEEEEeCCchhhHHHH
Q 041426 11 PFVRNFLKKASSM---FEMYVCTMGTQCYATAA 40 (109)
Q Consensus 11 P~~~~FL~~l~~~---fei~i~T~~~~~YA~~i 40 (109)
|.+.++++.+.+. ..+.+.|+|+...-..+
T Consensus 65 ~~l~~~i~~~~~~~~~~~i~i~TNg~~~~~~~~ 97 (119)
T PF13394_consen 65 EDLIELIEYLKERGPEIKIRIETNGTLPTEEKI 97 (119)
T ss_dssp HHHHHHHCTSTT-----EEEEEE-STTHHHHHH
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCeeccccch
Confidence 4567788887766 58999999988755553
No 152
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=27.98 E-value=96 Score=22.88 Aligned_cols=28 Identities=14% Similarity=0.039 Sum_probs=22.9
Q ss_pred ECccHHHHHHHhhc-CccEEEEeCCchhh
Q 041426 9 LRPFVRNFLKKASS-MFEMYVCTMGTQCY 36 (109)
Q Consensus 9 ~RP~~~~FL~~l~~-~fei~i~T~~~~~Y 36 (109)
.=|+..++|+.+.+ -..+++.|+.+..=
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~ 50 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKES 50 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 56899999999985 58899999866553
No 153
>PLN02645 phosphoglycolate phosphatase
Probab=27.62 E-value=1e+02 Score=23.37 Aligned_cols=34 Identities=12% Similarity=-0.122 Sum_probs=26.3
Q ss_pred ccHHHHHHHhh-cCccEEEEeCCchhhHHHHHHHh
Q 041426 11 PFVRNFLKKAS-SMFEMYVCTMGTQCYATAAVKVL 44 (109)
Q Consensus 11 P~~~~FL~~l~-~~fei~i~T~~~~~YA~~i~~~l 44 (109)
||..++|+.|. +-..+++.|+.+..-...+++.|
T Consensus 47 ~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l 81 (311)
T PLN02645 47 EGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF 81 (311)
T ss_pred cCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 89999999996 57899999998855555555443
No 154
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=27.49 E-value=75 Score=20.79 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=18.0
Q ss_pred ECccHHHHHHHhhc-CccEEEEeCCc
Q 041426 9 LRPFVRNFLKKASS-MFEMYVCTMGT 33 (109)
Q Consensus 9 ~RP~~~~FL~~l~~-~fei~i~T~~~ 33 (109)
-||++.++|+.+.+ .++++|.+.-+
T Consensus 50 ~Rp~l~~ll~~~~~g~~~~ivv~~~~ 75 (148)
T smart00857 50 DRPGLQRLLADLRAGDIDVLVVYKLD 75 (148)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEeccc
Confidence 49999999998864 45566665544
No 155
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=27.28 E-value=69 Score=21.33 Aligned_cols=23 Identities=22% Similarity=0.119 Sum_probs=17.3
Q ss_pred ECccHHHHHHHhhc-CccEEEEeC
Q 041426 9 LRPFVRNFLKKASS-MFEMYVCTM 31 (109)
Q Consensus 9 ~RP~~~~FL~~l~~-~fei~i~T~ 31 (109)
-||++.++|+.+.+ .++++|.+.
T Consensus 47 ~Rp~l~~ll~~i~~g~~d~lvV~~ 70 (134)
T cd03769 47 KRKGLLKLLEDVLAGKVERVVITY 70 (134)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEe
Confidence 59999999998875 456665554
No 156
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=27.18 E-value=1.1e+02 Score=18.53 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=44.4
Q ss_pred ccHHHHHHHhhcC-cc-EEEEeCCchhhHHHHHHHhcCCCCcccceEEeecC-CCC-----CceeccCcCCCCCCcEEEE
Q 041426 11 PFVRNFLKKASSM-FE-MYVCTMGTQCYATAAVKVLDSNSKYFNSRIIAQED-FKV-----KDRKNLDLVLSQERGTVIL 82 (109)
Q Consensus 11 P~~~~FL~~l~~~-fe-i~i~T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~-~~~-----~~~KdL~~l~~~~~~viiv 82 (109)
+.+.+||...... ++ ++|+.+++.+=..++++.+ |...++ .... ... ...+.+..--...+.++.+
T Consensus 5 ~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~-~~v~i~-----~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~ 78 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRAL-PGVGII-----RWVDPYRDERRQRAWRNALIERAFDADWVLFL 78 (97)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhC-CCcEEE-----EeCCCccchHHHHHHHHHHHHhCCCCCEEEEE
Confidence 4577888877666 66 9999999988788888777 332222 1111 110 0112221112367889999
Q ss_pred cCCchhhc
Q 041426 83 DDTESVWS 90 (109)
Q Consensus 83 Dd~~~~~~ 90 (109)
|-.+-.+.
T Consensus 79 D~DEfl~~ 86 (97)
T PF13704_consen 79 DADEFLVP 86 (97)
T ss_pred eeeEEEec
Confidence 87775554
No 157
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=26.76 E-value=1.5e+02 Score=19.48 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=26.5
Q ss_pred eEEECccHHHHHHHh---hcCccEEEEeCCchhhHHHHHHH
Q 041426 6 LVKLRPFVRNFLKKA---SSMFEMYVCTMGTQCYATAAVKV 43 (109)
Q Consensus 6 ~v~~RP~~~~FL~~l---~~~fei~i~T~~~~~YA~~i~~~ 43 (109)
...-||.+++.+++. ...-.+.|++-|.+.-.+.+-+.
T Consensus 114 ~~~gRP~~~~~~~~~~~~~~~~~~~V~~CGP~~m~~~vr~~ 154 (156)
T PF08030_consen 114 VHYGRPDLDEILSEVASQQSSGRVAVFVCGPPSMVDDVRNA 154 (156)
T ss_dssp EEES---HHHHHHHHHHHSTT-EEEEEEES-HHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHhCCCCcEEEEEcCcHHHHHHHHHH
Confidence 456699999999988 45667999999999988887653
No 158
>PRK10444 UMP phosphatase; Provisional
Probab=26.65 E-value=1.1e+02 Score=22.58 Aligned_cols=37 Identities=11% Similarity=0.033 Sum_probs=29.8
Q ss_pred ECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhc
Q 041426 9 LRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLD 45 (109)
Q Consensus 9 ~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lD 45 (109)
.=|+..++++.|.+ ...+++.|+.+..=+..+.+.|.
T Consensus 18 ~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~ 55 (248)
T PRK10444 18 AVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFA 55 (248)
T ss_pred eCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 46899999999975 68899999998876666666653
No 159
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=26.65 E-value=84 Score=23.90 Aligned_cols=23 Identities=9% Similarity=0.275 Sum_probs=21.0
Q ss_pred HHHHHHHhhcCccEEEEeCCchh
Q 041426 13 VRNFLKKASSMFEMYVCTMGTQC 35 (109)
Q Consensus 13 ~~~FL~~l~~~fei~i~T~~~~~ 35 (109)
+++++.+|.+.|.|+|-|+..+.
T Consensus 188 IEeLi~eLk~~yTIviVTHnmqQ 210 (253)
T COG1117 188 IEELITELKKKYTIVIVTHNMQQ 210 (253)
T ss_pred HHHHHHHHHhccEEEEEeCCHHH
Confidence 67999999999999999998765
No 160
>PF02290 SRP14: Signal recognition particle 14kD protein; InterPro: IPR003210 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the 14 kDa SRP14 component. Both SRP9 and SRP14 have the same (beta)-alpha-beta(3)-alpha fold. The heterodimer has pseudo two-fold symmetry and is saddle-like, consisting of a curved six-stranded beta-sheet that has four helices packed on the convex side and an exposed concave surface lined with positively charged residues. The SRP9/SRP14 heterodimer is essential for SRP RNA binding, mediating the pausing of synthesis of ribosome associated nascent polypeptides that have been engaged by the targeting domain of SRP [].; GO: 0008312 7S RNA binding, 0030942 endoplasmic reticulum signal peptide binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0005786 signal recognition particle, endoplasmic reticulum targeting; PDB: 1914_A 1RY1_D 1E8O_B 2W9J_B.
Probab=26.64 E-value=26 Score=22.39 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=10.3
Q ss_pred HHHHHHhhcCcc
Q 041426 14 RNFLKKASSMFE 25 (109)
Q Consensus 14 ~~FL~~l~~~fe 25 (109)
++||.+|.++|+
T Consensus 4 deFL~~L~~lf~ 15 (93)
T PF02290_consen 4 DEFLSELTKLFE 15 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 689999988887
No 161
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.28 E-value=1.4e+02 Score=17.16 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=15.5
Q ss_pred EEECcc-HHHHHHHhhcCccEE
Q 041426 7 VKLRPF-VRNFLKKASSMFEMY 27 (109)
Q Consensus 7 v~~RP~-~~~FL~~l~~~fei~ 27 (109)
+-=||| +..|++.+++.-+|.
T Consensus 5 ipdkPG~l~~~~~~i~~~~nI~ 26 (68)
T cd04885 5 FPERPGALKKFLELLGPPRNIT 26 (68)
T ss_pred CCCCCCHHHHHHHHhCCCCcEE
Confidence 344899 889999888655555
No 162
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=25.98 E-value=1.2e+02 Score=21.19 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=23.9
Q ss_pred CccHHHHHHHhhcCccEEEEeC-C---chhhHHHHHHH
Q 041426 10 RPFVRNFLKKASSMFEMYVCTM-G---TQCYATAAVKV 43 (109)
Q Consensus 10 RP~~~~FL~~l~~~fei~i~T~-~---~~~YA~~i~~~ 43 (109)
-+.+.+||++|... .|.+|++ | ..+|+..+++.
T Consensus 55 d~~~~~fl~~l~~K-kV~lF~T~G~~~~s~~~~~~~~~ 91 (160)
T PF12641_consen 55 DKDMKEFLKKLKGK-KVALFGTAGAGPDSEYAKKILKN 91 (160)
T ss_pred CHHHHHHHHHccCC-eEEEEEecCCCCchHHHHHHHHH
Confidence 35688999999765 5666655 3 57799988754
No 163
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=25.90 E-value=1.2e+02 Score=21.98 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=25.9
Q ss_pred CccHHHHHHHhhc-CccEEEEeCCc----hhhHHHHHHH
Q 041426 10 RPFVRNFLKKASS-MFEMYVCTMGT----QCYATAAVKV 43 (109)
Q Consensus 10 RP~~~~FL~~l~~-~fei~i~T~~~----~~YA~~i~~~ 43 (109)
=|++.++++.+.+ .+.+.+.||++ .++++.+.+.
T Consensus 16 ~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~ 54 (236)
T TIGR01460 16 IPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSL 54 (236)
T ss_pred CcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999975 59999999666 4566666663
No 164
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=25.86 E-value=1e+02 Score=23.51 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=27.2
Q ss_pred CccHHHHHHHhhc-----CccEEEEeCCc----hhhHHHHHHH
Q 041426 10 RPFVRNFLKKASS-----MFEMYVCTMGT----QCYATAAVKV 43 (109)
Q Consensus 10 RP~~~~FL~~l~~-----~fei~i~T~~~----~~YA~~i~~~ 43 (109)
-|++.++++.|.. ...+.+.||.+ +++|+.+.+.
T Consensus 18 i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~ 60 (321)
T TIGR01456 18 IAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSL 60 (321)
T ss_pred cHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHH
Confidence 5899999999986 78899999885 5677776444
No 165
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=25.71 E-value=82 Score=22.54 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=21.4
Q ss_pred cCccEEEEeCCchhhHHHHHHHh
Q 041426 22 SMFEMYVCTMGTQCYATAAVKVL 44 (109)
Q Consensus 22 ~~fei~i~T~~~~~YA~~i~~~l 44 (109)
-.|+++|||-....|++++++.|
T Consensus 107 g~yDlviflG~~~yy~sq~Ls~l 129 (170)
T COG1880 107 GNYDLVIFLGSIYYYLSQVLSGL 129 (170)
T ss_pred CCcceEEEEeccHHHHHHHHHHh
Confidence 47999999999999999999877
No 166
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=25.31 E-value=76 Score=18.33 Aligned_cols=25 Identities=12% Similarity=-0.086 Sum_probs=21.9
Q ss_pred cEEEEeCCchhhHHHHHHHhcCCCC
Q 041426 25 EMYVCTMGTQCYATAAVKVLDSNSK 49 (109)
Q Consensus 25 ei~i~T~~~~~YA~~i~~~lDp~~~ 49 (109)
.|.|||...=.|+..+.+.|+-.+-
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi 26 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGL 26 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCC
Confidence 4789999999999999999988763
No 167
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=25.23 E-value=85 Score=17.11 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.8
Q ss_pred EEEEeCCchhhHHHHHHHhcCCC
Q 041426 26 MYVCTMGTQCYATAAVKVLDSNS 48 (109)
Q Consensus 26 i~i~T~~~~~YA~~i~~~lDp~~ 48 (109)
|.+||+..=.|+..+...|+..+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~ 24 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG 24 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC
Confidence 68999999999999999998876
No 168
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=24.87 E-value=58 Score=21.25 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=15.5
Q ss_pred hhhHHHHHHHhcCCCCcc
Q 041426 34 QCYATAAVKVLDSNSKYF 51 (109)
Q Consensus 34 ~~YA~~i~~~lDp~~~~f 51 (109)
..+|+.+.+.|||.+...
T Consensus 43 e~~addl~nsLdP~~~~l 60 (97)
T PF05440_consen 43 EKAADDLVNSLDPRTPPL 60 (97)
T ss_pred HHHHHHHHhccCCCCCcc
Confidence 569999999999998764
No 169
>PRK10638 glutaredoxin 3; Provisional
Probab=24.37 E-value=82 Score=18.77 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.2
Q ss_pred cEEEEeCCchhhHHHHHHHhcCCCC
Q 041426 25 EMYVCTMGTQCYATAAVKVLDSNSK 49 (109)
Q Consensus 25 ei~i~T~~~~~YA~~i~~~lDp~~~ 49 (109)
+|.+||...=.|+..+.+.|+-.+-
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi 27 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGV 27 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCC
Confidence 6889999999999999999987763
No 170
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=24.35 E-value=71 Score=20.37 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=17.1
Q ss_pred EECccHHHHHHHhhcCccEEEEeC
Q 041426 8 KLRPFVRNFLKKASSMFEMYVCTM 31 (109)
Q Consensus 8 ~~RP~~~~FL~~l~~~fei~i~T~ 31 (109)
..||++.++|+.+.+.=.|+|+..
T Consensus 40 ~~R~~~~~ll~~~~~~d~lvv~~~ 63 (126)
T cd03768 40 KERPELQKLLEDLREGDTLVVTKL 63 (126)
T ss_pred cCCHHHHHHHHhCcCCCEEEEEEc
Confidence 569999999999885444444443
No 171
>PF09119 SicP-binding: SicP binding; InterPro: IPR015203 Members of this family bind the chaperone SicP, which is required both to maintain the stability of SptP, as well as to ensure the eventual secretion of the protein. The domain is found in the Salmonella effector protein SptP, which interacts with SicP chaperone dimers mainly through four regions of its chaperone-binding domain. The structure of the SptP-SicP complex contains four molecules of SicP, aligned in a linear fashion and arranged in two sets of tightly bound homodimers that bind two SptP molecules. The SicP homodimers do not interact with each other, but are held together by a molecular interface formed between two SptP molecules. Each SptP molecule is wrapped around by three SicP chaperones (two chaperones from one homodimer and a third one from the opposite homodimer pair) []. ; GO: 0005615 extracellular space; PDB: 1JYO_F.
Probab=24.24 E-value=92 Score=19.67 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=22.1
Q ss_pred HHHHHHHhhcCccEEEEeCCchhhHHHHHHHhcCC
Q 041426 13 VRNFLKKASSMFEMYVCTMGTQCYATAAVKVLDSN 47 (109)
Q Consensus 13 ~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lDp~ 47 (109)
+..||+.|++.| ..++|.++++..|-+
T Consensus 40 L~vFl~ALa~~Y--------Ge~~a~~~~~~~~ls 66 (81)
T PF09119_consen 40 LQVFLEALAERY--------GEETANKVLDKMDLS 66 (81)
T ss_dssp HHHHHHHHHHTT--------SCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHH--------hHHHHHHHHHHhccC
Confidence 568999999988 578999999986654
No 172
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=24.06 E-value=1.4e+02 Score=22.96 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=26.0
Q ss_pred ECccHHHHHHHhhc-CccEEEEeCCc---hhhHHHHHH
Q 041426 9 LRPFVRNFLKKASS-MFEMYVCTMGT---QCYATAAVK 42 (109)
Q Consensus 9 ~RP~~~~FL~~l~~-~fei~i~T~~~---~~YA~~i~~ 42 (109)
+||.+.++++.+.+ .+.+.|.|||+ .+.++.+.+
T Consensus 66 l~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~ 103 (358)
T TIGR02109 66 ARPDLVELVAHARRLGLYTNLITSGVGLTEARLDALAD 103 (358)
T ss_pred ccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHh
Confidence 48899999998865 46788999996 556666654
No 173
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=23.92 E-value=1.3e+02 Score=23.44 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=25.3
Q ss_pred ECccHHHHHHHhhc-CccEEEEeCCc---hhhHHHHHH
Q 041426 9 LRPFVRNFLKKASS-MFEMYVCTMGT---QCYATAAVK 42 (109)
Q Consensus 9 ~RP~~~~FL~~l~~-~fei~i~T~~~---~~YA~~i~~ 42 (109)
+||.+.++++.+.+ .+.+.|.|||+ .+.++.+.+
T Consensus 75 l~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~ 112 (378)
T PRK05301 75 LRKDLEELVAHARELGLYTNLITSGVGLTEARLAALKD 112 (378)
T ss_pred CchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHH
Confidence 47889999999874 67788999996 455555544
No 174
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=23.46 E-value=55 Score=23.57 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=20.5
Q ss_pred cCcc--EEEEeCCchhhHHHHHHHhc
Q 041426 22 SMFE--MYVCTMGTQCYATAAVKVLD 45 (109)
Q Consensus 22 ~~fe--i~i~T~~~~~YA~~i~~~lD 45 (109)
..|+ |+|||.+..+|..++.+.+.
T Consensus 66 ~LydalIYv~n~~l~DYvTPL~~ll~ 91 (196)
T PF12816_consen 66 GLYDALIYVWNRALNDYVTPLEELLE 91 (196)
T ss_pred CCCCeeeeeeeccccCCcHHHHHHHH
Confidence 4566 88999999999999988764
No 175
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=22.72 E-value=1.1e+02 Score=18.33 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=14.1
Q ss_pred cceeEEECcc--HHHHHHHhhcCc
Q 041426 3 NDKLVKLRPF--VRNFLKKASSMF 24 (109)
Q Consensus 3 ~~~~v~~RP~--~~~FL~~l~~~f 24 (109)
+...|..||| ++++|..+.+..
T Consensus 11 q~t~V~vrpg~ti~d~L~~~~~kr 34 (71)
T PF02196_consen 11 QRTVVQVRPGMTIRDALSKACKKR 34 (71)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHc
Confidence 3456788888 678887665543
No 176
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=22.51 E-value=1.1e+02 Score=25.34 Aligned_cols=33 Identities=6% Similarity=0.091 Sum_probs=27.2
Q ss_pred HHHHHHHhhcCccEEEEeCCchhhHHHHHHHhc
Q 041426 13 VRNFLKKASSMFEMYVCTMGTQCYATAAVKVLD 45 (109)
Q Consensus 13 ~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~lD 45 (109)
+++.|.+|.+-.++.+|++.+.+|+.++.+.|.
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~ 389 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLG 389 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHH
Confidence 677777888888999999988778888877763
No 177
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=22.05 E-value=1.2e+02 Score=19.04 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=24.3
Q ss_pred cHHHHHHHhhc----CccEEEEeCCchhhHHHHHHHh
Q 041426 12 FVRNFLKKASS----MFEMYVCTMGTQCYATAAVKVL 44 (109)
Q Consensus 12 ~~~~FL~~l~~----~fei~i~T~~~~~YA~~i~~~l 44 (109)
.+.+.|+.+.+ .+||+|.-+|+.+-..++++.+
T Consensus 12 ~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~ 48 (169)
T PF00535_consen 12 YLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEY 48 (169)
T ss_dssp THHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCEEEEEeccccccccccccccc
Confidence 46667776654 5999999999988888887654
No 178
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=21.99 E-value=88 Score=22.18 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=25.5
Q ss_pred cCccEEEEeCCchhhHHHHHHHhcCCCCcc
Q 041426 22 SMFEMYVCTMGTQCYATAAVKVLDSNSKYF 51 (109)
Q Consensus 22 ~~fei~i~T~~~~~YA~~i~~~lDp~~~~f 51 (109)
.-|++++.+.+......++.+.|-|.|.++
T Consensus 141 ~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lv 170 (205)
T PRK13944 141 APFDAIIVTAAASTIPSALVRQLKDGGVLV 170 (205)
T ss_pred CCccEEEEccCcchhhHHHHHhcCcCcEEE
Confidence 469999999988888888999999998764
No 179
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=21.87 E-value=1.6e+02 Score=18.46 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=27.1
Q ss_pred HHHHHhhcCccEEEEeCCc-----hhhHHHHHHHhcCCC
Q 041426 15 NFLKKASSMFEMYVCTMGT-----QCYATAAVKVLDSNS 48 (109)
Q Consensus 15 ~FL~~l~~~fei~i~T~~~-----~~YA~~i~~~lDp~~ 48 (109)
++++++-..=.|+||+.|+ =.|+..+.+.|+-.+
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~ 41 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACG 41 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcC
Confidence 5777777777899998865 568889999888776
No 180
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=21.31 E-value=1.9e+02 Score=21.56 Aligned_cols=95 Identities=13% Similarity=-0.037 Sum_probs=54.1
Q ss_pred CccHHHHHHHh-hcCccEEEEeCCchhhHHHHHHHhcCCCCc-ccceEEeec--CCCCC--ceeccC---cCCCCCCcEE
Q 041426 10 RPFVRNFLKKA-SSMFEMYVCTMGTQCYATAAVKVLDSNSKY-FNSRIIAQE--DFKVK--DRKNLD---LVLSQERGTV 80 (109)
Q Consensus 10 RP~~~~FL~~l-~~~fei~i~T~~~~~YA~~i~~~lDp~~~~-f~~r~~~r~--~~~~~--~~KdL~---~l~~~~~~vi 80 (109)
-|++.+|++.+ +.-++|++.|.-+....+...+.|.-.|-- + .+++=|. +.... ..|.-. .....-+-+.
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~ 200 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW-KHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRIWG 200 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc-CeeeecCCCCCCchHhHHHHHHHHHHHhCCceEEE
Confidence 47888999998 468999999999887766666666544411 2 3344333 21110 112211 1223456677
Q ss_pred EEcCCchhhcc-CCC-CeEEeCccccc
Q 041426 81 ILDDTESVWSD-HTK-NLKVVENMTTL 105 (109)
Q Consensus 81 ivDd~~~~~~~-~~~-N~i~i~~~~~~ 105 (109)
.|+|+..-+.. +.+ -.+..+--.||
T Consensus 201 ~iGDq~sDl~G~~~~~RtFKLPNPmYy 227 (229)
T TIGR01675 201 NIGDQWSDLLGSPPGRRTFKLPNPMYY 227 (229)
T ss_pred EECCChHHhcCCCccCceeeCCCCccc
Confidence 88998765553 222 45555544443
No 181
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=21.06 E-value=1.6e+02 Score=21.60 Aligned_cols=39 Identities=18% Similarity=0.072 Sum_probs=32.4
Q ss_pred ECccHHHHHHHhhcC-ccEEEEeCCchhhHHHHHHHhcCC
Q 041426 9 LRPFVRNFLKKASSM-FEMYVCTMGTQCYATAAVKVLDSN 47 (109)
Q Consensus 9 ~RP~~~~FL~~l~~~-fei~i~T~~~~~YA~~i~~~lDp~ 47 (109)
..|...+.|+.+.+. ..++|.|.-....+..+++.++..
T Consensus 22 ~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 22 SYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 457788899999764 899999999999999999887644
No 182
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=21.05 E-value=1.6e+02 Score=22.90 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=28.1
Q ss_pred ECccHHHHHHHhhcC--ccEEEEeCCchhhHHHHHHHh-cCCC
Q 041426 9 LRPFVRNFLKKASSM--FEMYVCTMGTQCYATAAVKVL-DSNS 48 (109)
Q Consensus 9 ~RP~~~~FL~~l~~~--fei~i~T~~~~~YA~~i~~~l-Dp~~ 48 (109)
+=|++.++++.+.+. +.++|-|||+. ..|++.| .|+.
T Consensus 93 Ly~~L~elI~~~k~~g~~~tflvTNgsl---pdv~~~L~~~dq 132 (296)
T COG0731 93 LYPNLGELIEEIKKRGKKTTFLVTNGSL---PDVLEELKLPDQ 132 (296)
T ss_pred cccCHHHHHHHHHhcCCceEEEEeCCCh---HHHHHHhccCCE
Confidence 348899999988765 48999999999 5666665 4653
No 183
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=21.04 E-value=2.3e+02 Score=21.42 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=28.3
Q ss_pred ECccHHHHHHHhhcCccEEEEeCCchhhHHHHHHHh
Q 041426 9 LRPFVRNFLKKASSMFEMYVCTMGTQCYATAAVKVL 44 (109)
Q Consensus 9 ~RP~~~~FL~~l~~~fei~i~T~~~~~YA~~i~~~l 44 (109)
+.-.+++-|+.-.+.|+|++-..++=..+.+|++.|
T Consensus 210 Ln~~ve~~l~~Y~~~yDIVlv~D~tm~v~~~il~~I 245 (246)
T PF05822_consen 210 LNDKVEENLEKYLEAYDIVLVDDQTMDVPNAILQSI 245 (246)
T ss_dssp E-SSHHHHHHHHHCCSSEEEET--B-HHHHHHHHHH
T ss_pred cccCHHHHHHHHHhcCCEEEECCCCchHHHHHHHHh
Confidence 344588899999999999999999999999999865
No 184
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=20.96 E-value=1.6e+02 Score=22.37 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=25.1
Q ss_pred ECccHHHHHHHhhcC--c-cEEEEeCCc--hhhHHHHHH
Q 041426 9 LRPFVRNFLKKASSM--F-EMYVCTMGT--QCYATAAVK 42 (109)
Q Consensus 9 ~RP~~~~FL~~l~~~--f-ei~i~T~~~--~~YA~~i~~ 42 (109)
+||.+.++++.+++. . ++.|-|+|. .++++.+.+
T Consensus 72 l~~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~ 110 (334)
T TIGR02666 72 LRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKE 110 (334)
T ss_pred ccCCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHH
Confidence 589999999998763 6 788999996 345554443
No 185
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=20.92 E-value=1.5e+02 Score=22.57 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=21.3
Q ss_pred ECccHHHHHHHhhcC---ccEEEEeCCch
Q 041426 9 LRPFVRNFLKKASSM---FEMYVCTMGTQ 34 (109)
Q Consensus 9 ~RP~~~~FL~~l~~~---fei~i~T~~~~ 34 (109)
+||.+.++++.+.+. .++.|-|+|..
T Consensus 78 l~~~l~~li~~i~~~~~~~~i~itTNG~l 106 (331)
T PRK00164 78 LRKDLEDIIAALAALPGIRDLALTTNGYL 106 (331)
T ss_pred CccCHHHHHHHHHhcCCCceEEEEcCchh
Confidence 478899999998765 58999999963
No 186
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=20.86 E-value=1.4e+02 Score=25.81 Aligned_cols=40 Identities=8% Similarity=-0.006 Sum_probs=35.3
Q ss_pred EECccHHHHHHHhhc-CccEEEEeCCchhhHHHHHHHhcCC
Q 041426 8 KLRPFVRNFLKKASS-MFEMYVCTMGTQCYATAAVKVLDSN 47 (109)
Q Consensus 8 ~~RP~~~~FL~~l~~-~fei~i~T~~~~~YA~~i~~~lDp~ 47 (109)
..||++.+-+++|.+ -.++++.|...+.-|..+.+.+.-.
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~ 486 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVD 486 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 479999999999975 5899999999999999999987543
No 187
>cd03767 SR_Res_par Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.
Probab=20.86 E-value=99 Score=20.82 Aligned_cols=22 Identities=27% Similarity=0.129 Sum_probs=14.2
Q ss_pred ECccHHHHHHHhhcCccEEEEe
Q 041426 9 LRPFVRNFLKKASSMFEMYVCT 30 (109)
Q Consensus 9 ~RP~~~~FL~~l~~~fei~i~T 30 (109)
-||++.++|+.+.+.=.|+|+.
T Consensus 46 ~Rp~~~~ll~~~~~gd~lvv~~ 67 (146)
T cd03767 46 DRPELFRLLDDAQSGDVLLVEQ 67 (146)
T ss_pred CCHHHHHHHHHhhCCCEEEEEe
Confidence 4788888888777663344443
No 188
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=20.25 E-value=3.1e+02 Score=18.97 Aligned_cols=58 Identities=17% Similarity=0.102 Sum_probs=27.2
Q ss_pred eCCchhhHHHHHHHhcCCCCcccceEEeecCCCCCceeccCcCCCCCCcEEEEcCCch
Q 041426 30 TMGTQCYATAAVKVLDSNSKYFNSRIIAQEDFKVKDRKNLDLVLSQERGTVILDDTES 87 (109)
Q Consensus 30 T~~~~~YA~~i~~~lDp~~~~f~~r~~~r~~~~~~~~KdL~~l~~~~~~viivDd~~~ 87 (109)
..+.-..|..+...++-.+.-...-+.++.....+..+-+.--..+-++|+||||-..
T Consensus 62 ~~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~~g~~~~~~g~~~~g~~VlIVDDvi~ 119 (173)
T TIGR00336 62 ALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHGEGGNIEGELLEGDKVVVVEDVIT 119 (173)
T ss_pred ccChHHHHHHHHHHhcCcCCCceEEEEcCCcccCCCCCceecCCCCCCEEEEEecccc
Confidence 3455567888888887553211111222211111100101101124578999999654
Done!