Query 041427
Match_columns 158
No_of_seqs 147 out of 1107
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 11:29:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1.9E-47 6.5E-52 291.8 9.9 149 7-157 23-180 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 4.5E-46 1.5E-50 279.4 9.9 137 17-156 6-151 (176)
3 3h16_A TIR protein; bacteria T 100.0 7E-34 2.4E-38 209.0 6.1 107 14-122 15-121 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 3E-32 1E-36 199.1 4.0 127 16-145 7-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 3.5E-28 1.2E-32 177.9 2.1 105 16-122 2-110 (149)
6 2js7_A Myeloid differentiation 99.9 2.7E-27 9.1E-32 175.2 4.9 102 16-119 13-117 (160)
7 2j67_A TOLL like receptor 10; 99.9 3.5E-27 1.2E-31 177.3 4.3 105 14-120 30-138 (178)
8 1t3g_A X-linked interleukin-1 99.9 1.4E-26 4.6E-31 171.2 6.4 103 18-120 1-115 (159)
9 3j0a_A TOLL-like receptor 5; m 99.8 5.6E-21 1.9E-25 170.8 7.5 103 15-119 666-774 (844)
10 1eiw_A Hypothetical protein MT 98.8 8.4E-09 2.9E-13 71.4 4.9 73 18-115 3-75 (111)
11 3hyn_A Putative signal transdu 98.2 5.7E-06 1.9E-10 61.6 8.0 83 27-116 27-118 (189)
12 2f62_A Nucleoside 2-deoxyribos 96.0 0.051 1.7E-06 39.4 8.8 77 33-114 26-105 (161)
13 2khz_A C-MYC-responsive protei 95.1 0.25 8.6E-06 35.6 9.9 90 16-114 8-110 (165)
14 4fyk_A Deoxyribonucleoside 5'- 94.4 0.24 8.1E-06 35.6 8.1 86 21-115 4-102 (152)
15 3ehd_A Uncharacterized conserv 93.5 0.44 1.5E-05 34.5 8.2 78 33-116 19-106 (162)
16 1s2d_A Purine trans deoxyribos 90.7 1.9 6.3E-05 31.2 8.7 87 21-114 9-116 (167)
17 2yvq_A Carbamoyl-phosphate syn 84.9 2.5 8.7E-05 29.5 6.1 62 22-85 27-106 (143)
18 1f8y_A Nucleoside 2-deoxyribos 81.6 2.5 8.5E-05 30.1 5.0 86 21-114 5-113 (157)
19 1byr_A Protein (endonuclease); 64.5 17 0.00057 24.6 5.7 37 35-72 15-51 (155)
20 1v95_A Nuclear receptor coacti 64.3 16 0.00055 25.2 5.5 45 33-79 21-66 (130)
21 2jug_A TUBC protein; docking d 63.4 5.4 0.00018 24.7 2.7 39 36-74 7-48 (78)
22 1evl_A Threonyl-tRNA synthetas 54.6 25 0.00086 28.2 6.0 61 18-83 297-357 (401)
23 1wu7_A Histidyl-tRNA synthetas 54.6 38 0.0013 27.4 7.1 59 19-83 332-391 (434)
24 3net_A Histidyl-tRNA synthetas 51.1 29 0.00099 28.6 5.9 62 18-84 370-431 (465)
25 4g85_A Histidine-tRNA ligase, 49.8 42 0.0014 28.0 6.7 63 17-83 417-479 (517)
26 3ikl_A DNA polymerase subunit 48.9 54 0.0018 27.4 7.1 54 30-87 361-417 (459)
27 4g84_A Histidine--tRNA ligase, 47.9 41 0.0014 27.3 6.3 62 18-83 365-426 (464)
28 1htt_A Histidyl-tRNA synthetas 47.8 27 0.00092 28.1 5.1 60 18-83 326-388 (423)
29 3lc0_A Histidyl-tRNA synthetas 46.3 50 0.0017 27.3 6.6 61 18-83 360-420 (456)
30 2d00_A V-type ATP synthase sub 44.6 60 0.0021 21.3 5.6 69 40-121 15-83 (109)
31 1sc3_B Interleukin-1 beta conv 43.6 6.6 0.00022 25.1 0.6 24 24-47 22-45 (88)
32 4e51_A Histidine--tRNA ligase; 43.4 39 0.0013 28.0 5.5 64 19-83 354-417 (467)
33 1nj1_A PROR, proline-tRNA synt 43.0 29 0.00097 29.1 4.6 63 18-84 313-379 (501)
34 1qe0_A Histidyl-tRNA synthetas 40.4 28 0.00096 27.9 4.1 61 18-83 328-388 (420)
35 2ql9_B Caspase-7; cysteine pro 38.9 7.7 0.00026 25.1 0.4 29 19-47 10-47 (97)
36 2i4l_A Proline-tRNA ligase; al 38.1 20 0.00067 29.6 2.8 62 19-84 365-428 (458)
37 1qtn_B Caspase-8; apoptosis, d 37.8 7.5 0.00026 25.1 0.2 30 18-47 11-49 (95)
38 2zt5_A Glycyl-tRNA synthetase; 37.8 74 0.0025 27.9 6.6 62 19-84 559-621 (693)
39 2i4r_A V-type ATP synthase sub 37.1 18 0.00063 23.7 2.0 66 41-118 22-87 (102)
40 2j3l_A Prolyl-tRNA synthetase; 36.5 57 0.002 27.4 5.6 63 19-85 470-534 (572)
41 2dko_B Caspase-3; low barrier 35.2 9.6 0.00033 25.0 0.4 31 17-47 14-53 (103)
42 3d7n_A Flavodoxin, WRBA-like p 34.8 92 0.0031 21.9 5.8 74 33-116 21-100 (193)
43 3aon_B V-type sodium ATPase su 34.6 31 0.0011 23.0 3.0 50 41-97 15-64 (115)
44 1pyo_B Caspase-2; apoptosis, c 34.4 10 0.00034 25.0 0.4 29 19-47 14-51 (105)
45 1qf6_A THRRS, threonyl-tRNA sy 33.3 80 0.0027 27.3 6.0 63 19-86 539-601 (642)
46 1nyr_A Threonyl-tRNA synthetas 33.1 55 0.0019 28.1 5.0 60 19-83 545-605 (645)
47 2pw6_A Uncharacterized protein 32.6 81 0.0028 24.1 5.4 69 33-103 95-163 (271)
48 3hjn_A DTMP kinase, thymidylat 32.1 57 0.0019 23.3 4.3 32 22-53 1-34 (197)
49 3hzh_A Chemotaxis response reg 31.7 1.1E+02 0.0037 20.0 7.4 61 15-87 32-95 (157)
50 3ro3_B Minsc, peptide of prote 31.4 41 0.0014 15.7 2.1 15 134-148 6-20 (22)
51 1bax_A M-PMV MA, M-PMV matrix 29.5 32 0.0011 22.4 2.2 18 33-50 9-26 (94)
52 2jgn_A DBX, DDX3, ATP-dependen 29.3 1.4E+02 0.0049 20.7 8.2 84 35-122 58-155 (185)
53 2xzd_B Caspase-3; hydrolase-pr 29.2 15 0.00052 24.8 0.6 29 19-47 15-52 (118)
54 1hc7_A Prolyl-tRNA synthetase; 28.8 33 0.0011 28.6 2.7 63 18-84 286-353 (477)
55 3ial_A Prolyl-tRNA synthetase; 28.7 21 0.00071 30.3 1.5 33 33-65 322-356 (518)
56 1ati_A Glycyl-tRNA synthetase; 28.6 72 0.0025 26.7 4.8 61 19-84 398-461 (505)
57 5nul_A Flavodoxin; electron tr 27.6 1.3E+02 0.0044 19.5 5.5 46 33-88 13-59 (138)
58 4h3d_A 3-dehydroquinate dehydr 27.6 62 0.0021 24.5 3.9 69 39-109 104-172 (258)
59 4a8j_B Elongator complex prote 27.0 1.4E+02 0.0047 23.1 5.7 64 47-116 68-137 (270)
60 1h4v_B Histidyl-tRNA synthetas 26.8 1.3E+02 0.0045 24.0 6.0 61 18-84 327-387 (421)
61 4hvc_A Bifunctional glutamate/ 26.6 33 0.0011 29.1 2.3 32 33-64 331-363 (519)
62 2fz5_A Flavodoxin; alpha/beta 26.1 1.3E+02 0.0045 19.2 8.2 71 33-113 14-86 (137)
63 3dt5_A Uncharacterized protein 25.1 25 0.00087 23.1 1.1 62 84-147 36-100 (135)
64 1ydg_A Trp repressor binding p 24.7 1E+02 0.0035 21.7 4.5 80 33-115 21-123 (211)
65 3rjm_B Caspase-2; caspase-2, c 24.5 18 0.00062 24.3 0.3 30 18-47 14-52 (117)
66 1z0f_A RAB14, member RAS oncog 24.1 1.6E+02 0.0053 19.3 5.9 29 59-87 72-101 (179)
67 2i4i_A ATP-dependent RNA helic 23.0 1.6E+02 0.0055 22.7 5.8 110 34-147 287-411 (417)
68 2p5s_A RAS and EF-hand domain 23.0 1.6E+02 0.0055 20.1 5.3 27 59-85 85-112 (199)
69 4a6h_A Phosphatidylinositol 4, 23.0 52 0.0018 21.8 2.4 19 134-152 102-120 (120)
70 3l4e_A Uncharacterized peptida 22.9 2.2E+02 0.0074 20.5 6.5 69 19-95 28-97 (206)
71 3pid_A UDP-glucose 6-dehydroge 21.1 81 0.0028 25.9 3.7 52 28-79 346-401 (432)
72 2il1_A RAB12; G-protein, GDP, 21.0 2E+02 0.0068 19.5 5.4 28 59-86 83-111 (192)
73 2yry_A Pleckstrin homology dom 20.2 75 0.0026 20.1 2.8 18 134-151 104-121 (122)
74 2y8e_A RAB-protein 6, GH09086P 20.2 1.7E+02 0.0057 19.2 4.7 27 59-85 71-98 (179)
75 3uh0_A Threonyl-tRNA synthetas 20.1 70 0.0024 26.4 3.1 62 19-84 345-422 (460)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.9e-47 Score=291.79 Aligned_cols=149 Identities=40% Similarity=0.748 Sum_probs=128.8
Q ss_pred CCCcccCCCCCCceeEEEecccCcCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCC
Q 041427 7 SSSSTHHQILQTKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYA 86 (158)
Q Consensus 7 ~ss~~~~~~~~~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~ 86 (158)
+|++++...++++|||||||+++|+++.|+.+|+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||++|+
T Consensus 23 ~s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa 102 (204)
T 3ozi_A 23 DSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYA 102 (204)
T ss_dssp -----------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGG
T ss_pred cCCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccc
Confidence 33444445668999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhhccCCCceeEEEEEecCCchh---------hHHhhHHHhhhCHHHHHHHHHHHHHhhccccceec
Q 041427 87 SSPWCLDELAKIVECGNKRNDRKVFAVFYGVDPTDR---------VFAKYEEEFKENHEKVLKWRAALTRVASLAGWHLQ 157 (158)
Q Consensus 87 ~S~wc~~El~~~~~~~~~~~~~~iiPV~~~v~p~~v---------~f~~~~~~~~~~~~~~~~W~~al~~i~~~~G~~~~ 157 (158)
+|.||++||..|+++....++++||||||+|+|++| +|.++++++ ..+++++||.||++||+++||++.
T Consensus 103 ~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~ 180 (204)
T 3ozi_A 103 DSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIG 180 (204)
T ss_dssp GCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEEC
T ss_pred cCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecC
Confidence 999999999999999433568899999999999999 677776665 368999999999999999999985
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=4.5e-46 Score=279.35 Aligned_cols=137 Identities=49% Similarity=0.823 Sum_probs=115.0
Q ss_pred CCceeEEEecccCcCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCCCChhhHHHHH
Q 041427 17 QTKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELA 96 (158)
Q Consensus 17 ~~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~S~wc~~El~ 96 (158)
+++|||||||+++|++..|+++|+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||++|++|.||++||.
T Consensus 6 ~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~ 85 (176)
T 3jrn_A 6 ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELV 85 (176)
T ss_dssp -CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHH
T ss_pred CCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHH
Confidence 46899999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCceeEEEEEecCCchh---------hHHhhHHHhhhCHHHHHHHHHHHHHhhcccccee
Q 041427 97 KIVECGNKRNDRKVFAVFYGVDPTDR---------VFAKYEEEFKENHEKVLKWRAALTRVASLAGWHL 156 (158)
Q Consensus 97 ~~~~~~~~~~~~~iiPV~~~v~p~~v---------~f~~~~~~~~~~~~~~~~W~~al~~i~~~~G~~~ 156 (158)
.++++ .+.++++||||||+++|++| +|.+++++ .+.+++++||+||++|||++|+++
T Consensus 86 ~i~~~-~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~ 151 (176)
T 3jrn_A 86 TIMDF-EKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCS 151 (176)
T ss_dssp HHHHH-HHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEEC
T ss_pred HHHhh-hccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceec
Confidence 99999 68888999999999999999 57777655 468999999999999999999987
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=7e-34 Score=209.05 Aligned_cols=107 Identities=21% Similarity=0.393 Sum_probs=99.8
Q ss_pred CCCCCceeEEEecccCcCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCCCChhhHH
Q 041427 14 QILQTKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLD 93 (158)
Q Consensus 14 ~~~~~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~S~wc~~ 93 (158)
..++++|||||||+++| +..|+.+|...|+++|+++|+|++++.+|+.|.++|.++|++|+++|+|+|++|++|.||++
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 35678999999999999 46799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCceeEEEEEecCCchh
Q 041427 94 ELAKIVECGNKRNDRKVFAVFYGVDPTDR 122 (158)
Q Consensus 94 El~~~~~~~~~~~~~~iiPV~~~v~p~~v 122 (158)
||..++++ ...++++||||||+++|++|
T Consensus 94 El~~~~~~-~~~~~~~iiPV~~~v~p~~v 121 (154)
T 3h16_A 94 ELDGLFQL-ESSGRSRILPIWHKVSKDEV 121 (154)
T ss_dssp HHHHHTCC-CTTSCCCEEEEEESCCTGGG
T ss_pred HHHHHHHH-HhcCCCEEEEEEecCCHHHH
Confidence 99999998 67778899999999999998
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.97 E-value=3e-32 Score=199.06 Aligned_cols=127 Identities=18% Similarity=0.318 Sum_probs=94.9
Q ss_pred CCCceeEEEecccCcCchhHHHHHHHHHhc--CCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCCCChhhHH
Q 041427 16 LQTKYDVFLSFRGEDTRNNFTDHLHVALIR--NGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLD 93 (158)
Q Consensus 16 ~~~~ydVFISys~~D~~~~fv~~L~~~L~~--~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~S~wc~~ 93 (158)
.++.|||||||+++|. .||.+|..+|++ .|+++|+|++|+.+|+.+.++|.++|++|+++|+|+|++|++|.||+.
T Consensus 7 ~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~ 84 (146)
T 3ub2_A 7 WSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY 84 (146)
T ss_dssp TSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred CCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence 4678999999999994 589999999998 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCceeEEEEEecCCchh----------hHHhhHHHhhhCHHHHHHHHHHH
Q 041427 94 ELAKIVECGNKRNDRKVFAVFYGVDPTDR----------VFAKYEEEFKENHEKVLKWRAAL 145 (158)
Q Consensus 94 El~~~~~~~~~~~~~~iiPV~~~v~p~~v----------~f~~~~~~~~~~~~~~~~W~~al 145 (158)
|+..|+++ ...+..+||||+++++++++ ++....+.|.+..+.+.+|++||
T Consensus 85 El~~al~~-~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 85 QMLQALTE-APGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHT-SSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHH-HhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence 99999998 43334478899999887776 33344566666788999999875
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.94 E-value=3.5e-28 Score=177.88 Aligned_cols=105 Identities=19% Similarity=0.287 Sum_probs=93.5
Q ss_pred CCCceeEEEecccCcCchhHHHH-HHHHHhcC--CeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCCCChhhH
Q 041427 16 LQTKYDVFLSFRGEDTRNNFTDH-LHVALIRN--GFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCL 92 (158)
Q Consensus 16 ~~~~ydVFISys~~D~~~~fv~~-L~~~L~~~--gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~S~wc~ 92 (158)
.++.|||||||+++|. .||.+ |...|++. |+++|+|++|+.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4678999999999994 69986 99999986 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCceeEEEEEe-cCCchh
Q 041427 93 DELAKIVECGNKRNDRKVFAVFYG-VDPTDR 122 (158)
Q Consensus 93 ~El~~~~~~~~~~~~~~iiPV~~~-v~p~~v 122 (158)
.|+..|+++..+.++.+||||+|+ +++.++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 999999865455567789999996 554433
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.93 E-value=2.7e-27 Score=175.19 Aligned_cols=102 Identities=17% Similarity=0.256 Sum_probs=92.0
Q ss_pred CCCceeEEEecccCcCchhHHHHHHHHHhcC--CeEEEecCCCCCCCccccHHHHHhhh-hcceEEEEEecCCCCChhhH
Q 041427 16 LQTKYDVFLSFRGEDTRNNFTDHLHVALIRN--GFVAFKDDETLDRGNEISSELSKAIE-ESNVSIVILSKNYASSPWCL 92 (158)
Q Consensus 16 ~~~~ydVFISys~~D~~~~fv~~L~~~L~~~--gi~vf~d~~~l~~G~~i~~~i~~~i~-~s~~~IvvlS~~~~~S~wc~ 92 (158)
.++.|||||||+++| +.||.+|...|++. |+++|+|++|+.+|+.+.++|.++|+ +|+++|+|+|++|++|.||+
T Consensus 13 ~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 357899999999999 57999999999984 69999999999999999999999999 79999999999999999999
Q ss_pred HHHHHHHHhhccCCCceeEEEEEecCC
Q 041427 93 DELAKIVECGNKRNDRKVFAVFYGVDP 119 (158)
Q Consensus 93 ~El~~~~~~~~~~~~~~iiPV~~~v~p 119 (158)
.|+..|+++....++.+||||+|+.-+
T Consensus 91 ~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 91 FQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 999999987434556799999997543
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.93 E-value=3.5e-27 Score=177.34 Aligned_cols=105 Identities=20% Similarity=0.322 Sum_probs=88.9
Q ss_pred CCCCCceeEEEecccCcCchhHHHH-HHHHHhc--CCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCCCChh
Q 041427 14 QILQTKYDVFLSFRGEDTRNNFTDH-LHVALIR--NGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPW 90 (158)
Q Consensus 14 ~~~~~~ydVFISys~~D~~~~fv~~-L~~~L~~--~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~S~w 90 (158)
...++.|||||||+++| ..||.. |...|++ .|+++|+|++|+.+|+.+.++|.++|++|+++|+|+||+|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 35678999999999999 479975 9999998 899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhccCCCceeEEEEEe-cCCc
Q 041427 91 CLDELAKIVECGNKRNDRKVFAVFYG-VDPT 120 (158)
Q Consensus 91 c~~El~~~~~~~~~~~~~~iiPV~~~-v~p~ 120 (158)
|+.|+..|+++..+.++.+||||+|+ +++.
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~~ 138 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIPFY 138 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCCGG
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCChH
Confidence 99999999976445567799999996 4433
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.4e-26 Score=171.21 Aligned_cols=103 Identities=19% Similarity=0.315 Sum_probs=91.5
Q ss_pred CceeEEEecccCcC---------chhHHHHHHH-HHh-cCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCC
Q 041427 18 TKYDVFLSFRGEDT---------RNNFTDHLHV-ALI-RNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYA 86 (158)
Q Consensus 18 ~~ydVFISys~~D~---------~~~fv~~L~~-~L~-~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~ 86 (158)
+.|||||||+++|. ++.||.+|.. .|+ +.|+++|+|++|+.||+.+.++|.++|++|+.+|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 57999999999996 3578888665 699 799999999999999999999999999999999999999997
Q ss_pred -CChhhHHHHHHHHHhhccCCCceeEEEEEecCCc
Q 041427 87 -SSPWCLDELAKIVECGNKRNDRKVFAVFYGVDPT 120 (158)
Q Consensus 87 -~S~wc~~El~~~~~~~~~~~~~~iiPV~~~v~p~ 120 (158)
.|.||+.|+..|+++....++.+||||+++..+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999885566788999999975444
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=5.6e-21 Score=170.78 Aligned_cols=103 Identities=19% Similarity=0.305 Sum_probs=93.6
Q ss_pred CCCCceeEEEecccCcCchhHH-HHHHHHHhc-----CCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCCCC
Q 041427 15 ILQTKYDVFLSFRGEDTRNNFT-DHLHVALIR-----NGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASS 88 (158)
Q Consensus 15 ~~~~~ydVFISys~~D~~~~fv-~~L~~~L~~-----~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~S 88 (158)
...+.|||||||+++|. .|| ..|...|++ .|+++|++++|+.||+.+.++|.++|++|+++|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 45689999999999994 577 779999985 5899999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhccCCCceeEEEEEecCC
Q 041427 89 PWCLDELAKIVECGNKRNDRKVFAVFYGVDP 119 (158)
Q Consensus 89 ~wc~~El~~~~~~~~~~~~~~iiPV~~~v~p 119 (158)
+||+.|+..|+.+..+.++++||||+++..|
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 9999999999988667778899999997444
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.76 E-value=8.4e-09 Score=71.41 Aligned_cols=73 Identities=10% Similarity=0.046 Sum_probs=57.8
Q ss_pred CceeEEEecccCcCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCCCChhhHHHHHH
Q 041427 18 TKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAK 97 (158)
Q Consensus 18 ~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~S~wc~~El~~ 97 (158)
++|.+||||+.+| . .+.|...|.+.|+..- | ..|+.|+++|++.++...+|+||..|+..
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~-~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWR-P---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEE-E---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCeee-c---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 4799999999998 3 4455555544444322 2 57899999999999999999999999999
Q ss_pred HHHhhccCCCceeEEEEE
Q 041427 98 IVECGNKRNDRKVFAVFY 115 (158)
Q Consensus 98 ~~~~~~~~~~~~iiPV~~ 115 (158)
|.+. +++||-|.-
T Consensus 63 A~~~-----gkpIigV~~ 75 (111)
T 1eiw_A 63 ARKS-----SKPIITVRP 75 (111)
T ss_dssp HTTT-----TCCEEEECC
T ss_pred HHHc-----CCCEEEEEc
Confidence 8776 889988875
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=98.20 E-value=5.7e-06 Score=61.58 Aligned_cols=83 Identities=16% Similarity=0.150 Sum_probs=66.6
Q ss_pred ccCcCchhHHHHHHHHHhcCCeEEEecCCCCC-------C-CccccHHHHHhhhhcceEEEEEecCCCCChhhHHHHHHH
Q 041427 27 RGEDTRNNFTDHLHVALIRNGFVAFKDDETLD-------R-GNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKI 98 (158)
Q Consensus 27 s~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~-------~-G~~i~~~i~~~i~~s~~~IvvlS~~~~~S~wc~~El~~~ 98 (158)
+.+| ..+.+.|...-.+..+--|.|-++.. . -..|...+.+.|..|+.+|+++|++...|.|..+|++.+
T Consensus 27 a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 4555 44677887777776666677765442 2 346788999999999999999999999999999999999
Q ss_pred H-HhhccCCCceeEEEEEe
Q 041427 99 V-ECGNKRNDRKVFAVFYG 116 (158)
Q Consensus 99 ~-~~~~~~~~~~iiPV~~~ 116 (158)
. +. +.+||-|..+
T Consensus 105 i~~~-----~~PII~Vy~~ 118 (189)
T 3hyn_A 105 IGTK-----GLPVIVIYPD 118 (189)
T ss_dssp TTTT-----CCCEEEEETT
T ss_pred HHhc-----CCcEEEEECC
Confidence 8 66 8899999876
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=95.97 E-value=0.051 Score=39.40 Aligned_cols=77 Identities=10% Similarity=0.108 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhcCCeEEEecCCCC-CCCccccHHHHHhhhhcceEEEEEec--CCCCChhhHHHHHHHHHhhccCCCce
Q 041427 33 NNFTDHLHVALIRNGFVAFKDDETL-DRGNEISSELSKAIEESNVSIVILSK--NYASSPWCLDELAKIVECGNKRNDRK 109 (158)
Q Consensus 33 ~~fv~~L~~~L~~~gi~vf~d~~~l-~~G~~i~~~i~~~i~~s~~~IvvlS~--~~~~S~wc~~El~~~~~~~~~~~~~~ 109 (158)
..+...+.+.|++.|+.+++-..+- ..+..+.+.-.++|++|+++|++++| .-..+.-+..|+..+... +++
T Consensus 26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Al-----gKP 100 (161)
T 2f62_A 26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL-----NKM 100 (161)
T ss_dssp HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT-----TCE
T ss_pred HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHC-----CCE
Confidence 4688999999999999998843211 12233344446789999999999997 444556689999999888 888
Q ss_pred eEEEE
Q 041427 110 VFAVF 114 (158)
Q Consensus 110 iiPV~ 114 (158)
|+-+.
T Consensus 101 Vi~l~ 105 (161)
T 2f62_A 101 VLTFT 105 (161)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 87654
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=95.10 E-value=0.25 Score=35.59 Aligned_cols=90 Identities=14% Similarity=0.158 Sum_probs=60.8
Q ss_pred CCCceeEEEecccCc-C-chhHHHHHHHHHhcCCeEEEecCCC----CCCCc-------cccHHHHHhhhhcceEEEEEe
Q 041427 16 LQTKYDVFLSFRGED-T-RNNFTDHLHVALIRNGFVAFKDDET----LDRGN-------EISSELSKAIEESNVSIVILS 82 (158)
Q Consensus 16 ~~~~ydVFISys~~D-~-~~~fv~~L~~~L~~~gi~vf~d~~~----l~~G~-------~i~~~i~~~i~~s~~~IvvlS 82 (158)
.+++..|||+=.-.. . .......+.+.|++.| .|+.++.- -..|. .+...-.+.|++|+++|++++
T Consensus 8 ~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~ 86 (165)
T 2khz_A 8 EQAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT 86 (165)
T ss_dssp SCCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC
Confidence 345667999843331 1 1224589999999999 88654321 11221 122233478999999999997
Q ss_pred cCCCCChhhHHHHHHHHHhhccCCCceeEEEE
Q 041427 83 KNYASSPWCLDELAKIVECGNKRNDRKVFAVF 114 (158)
Q Consensus 83 ~~~~~S~wc~~El~~~~~~~~~~~~~~iiPV~ 114 (158)
..+.-+..|+..+... +++|+-+.
T Consensus 87 ---~~d~Gt~~EiGyA~al-----gKPVi~l~ 110 (165)
T 2khz_A 87 ---QPSLGVGYELGRAVAL-----GKPILCLF 110 (165)
T ss_dssp ---SCCHHHHHHHHHHHHT-----CSSEEEEE
T ss_pred ---CCCCCHHHHHHHHHHC-----CCEEEEEE
Confidence 5678899999999887 88887654
No 14
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=94.39 E-value=0.24 Score=35.58 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=57.9
Q ss_pred eEEEec--ccCcCchhHHHHHHHHHhcCCeEEEecCC---CC-CCCc-------cccHHHHHhhhhcceEEEEEecCCCC
Q 041427 21 DVFLSF--RGEDTRNNFTDHLHVALIRNGFVAFKDDE---TL-DRGN-------EISSELSKAIEESNVSIVILSKNYAS 87 (158)
Q Consensus 21 dVFISy--s~~D~~~~fv~~L~~~L~~~gi~vf~d~~---~l-~~G~-------~i~~~i~~~i~~s~~~IvvlS~~~~~ 87 (158)
.|||+= ++.+....+...+.+.|++.| .|+..+- ++ ..|+ .+.+.-.+.|++|+++|++++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 466662 332223467899999999999 6754321 11 1122 244445678999999999998 66
Q ss_pred ChhhHHHHHHHHHhhccCCCceeEEEEE
Q 041427 88 SPWCLDELAKIVECGNKRNDRKVFAVFY 115 (158)
Q Consensus 88 S~wc~~El~~~~~~~~~~~~~~iiPV~~ 115 (158)
+.-...|+..|... +++|+-++-
T Consensus 80 d~Gt~~EiG~A~al-----gkPV~~l~~ 102 (152)
T 4fyk_A 80 SLGVGYELGRAVAL-----GKPILCLFR 102 (152)
T ss_dssp CHHHHHHHHHHHHT-----TCCEEEEEC
T ss_pred CCCHHHHHHHHHHc-----CCeEEEEEe
Confidence 78889999999887 777776654
No 15
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=93.51 E-value=0.44 Score=34.47 Aligned_cols=78 Identities=10% Similarity=0.049 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHhcC--CeEEEecCCCC----CCCcccc----HHHHHhhhhcceEEEEEecCCCCChhhHHHHHHHHHhh
Q 041427 33 NNFTDHLHVALIRN--GFVAFKDDETL----DRGNEIS----SELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECG 102 (158)
Q Consensus 33 ~~fv~~L~~~L~~~--gi~vf~d~~~l----~~G~~i~----~~i~~~i~~s~~~IvvlS~~~~~S~wc~~El~~~~~~~ 102 (158)
..+...+.+.|+.. |+.+|.-.++- .++..+. +.-.++|++|+++|.++. ....+..+..|+..+...
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~- 96 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAK- 96 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHC-
Confidence 45788899999864 99998753322 1222333 333467999999999995 344678899999999987
Q ss_pred ccCCCceeEEEEEe
Q 041427 103 NKRNDRKVFAVFYG 116 (158)
Q Consensus 103 ~~~~~~~iiPV~~~ 116 (158)
+++|+.+.-+
T Consensus 97 ----gkPVi~~~~D 106 (162)
T 3ehd_A 97 ----GIPVVALYTD 106 (162)
T ss_dssp ----TCCEEEECCC
T ss_pred ----CCEEEEEEcC
Confidence 7787776543
No 16
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=90.73 E-value=1.9 Score=31.17 Aligned_cols=87 Identities=9% Similarity=0.085 Sum_probs=60.0
Q ss_pred eEEEecc--cCcCchhHHHHHHHHHhcC--CeEEEecCCC-C--------CCC--------ccccHHHHHhhhhcceEEE
Q 041427 21 DVFLSFR--GEDTRNNFTDHLHVALIRN--GFVAFKDDET-L--------DRG--------NEISSELSKAIEESNVSIV 79 (158)
Q Consensus 21 dVFISys--~~D~~~~fv~~L~~~L~~~--gi~vf~d~~~-l--------~~G--------~~i~~~i~~~i~~s~~~Iv 79 (158)
.||+.=. +.+ ...+...+.+.|++. |+.+|.-.++ . ..| ..|.+.-.++|++|+++|.
T Consensus 9 kIYLAGP~F~~~-~~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vVA 87 (167)
T 1s2d_A 9 KIYLGSPFYSDA-QRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVF 87 (167)
T ss_dssp EEEEECCCSSHH-HHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred EEEEECCCCCHH-HHHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEEE
Confidence 4777632 222 245789999999999 8999875431 1 111 1223334467999999999
Q ss_pred EEecCCCCChhhHHHHHHHHHhhccCCCceeEEEE
Q 041427 80 ILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVF 114 (158)
Q Consensus 80 vlS~~~~~S~wc~~El~~~~~~~~~~~~~~iiPV~ 114 (158)
++...- .+.-+..|+..+... +++|+-+.
T Consensus 88 ~ldg~~-~D~GTa~EiGyA~al-----gKPVv~l~ 116 (167)
T 1s2d_A 88 LYDMDQ-LDDGSAFXIGFMRAM-----HKPVILVP 116 (167)
T ss_dssp EEESSS-CCHHHHHHHHHHHHT-----TCCEEEEE
T ss_pred ECCCCC-CCCCceeehhhHhhC-----CCeEEEEE
Confidence 998744 456788999999887 88887764
No 17
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=84.91 E-value=2.5 Score=29.46 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=39.4
Q ss_pred EEEecccCcCchhHHHHHHHHHhcCCeEEEec-------------CCCCCC---C-c-cccHHHHHhhhhcceEEEEEec
Q 041427 22 VFLSFRGEDTRNNFTDHLHVALIRNGFVAFKD-------------DETLDR---G-N-EISSELSKAIEESNVSIVILSK 83 (158)
Q Consensus 22 VFISys~~D~~~~fv~~L~~~L~~~gi~vf~d-------------~~~l~~---G-~-~i~~~i~~~i~~s~~~IvvlS~ 83 (158)
||||.+..| +.-+-.+.+.|...|++++-- -+.+.. | + .-.++|.+.|++-++-+||..|
T Consensus 27 vliSv~d~d--K~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSF--RPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGG--HHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccc--hHHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 999998777 334555777888889887721 111111 2 1 0003577788888888888887
Q ss_pred CC
Q 041427 84 NY 85 (158)
Q Consensus 84 ~~ 85 (158)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 18
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=81.64 E-value=2.5 Score=30.14 Aligned_cols=86 Identities=12% Similarity=0.088 Sum_probs=57.2
Q ss_pred eEEEe---cccCcCchhHHHHHHHHHhcCCe----EEEecCCCCC------------CC----ccccHHHHHhhhhcceE
Q 041427 21 DVFLS---FRGEDTRNNFTDHLHVALIRNGF----VAFKDDETLD------------RG----NEISSELSKAIEESNVS 77 (158)
Q Consensus 21 dVFIS---ys~~D~~~~fv~~L~~~L~~~gi----~vf~d~~~l~------------~G----~~i~~~i~~~i~~s~~~ 77 (158)
.||+. |+... ......+.+.|+.+|. .+|.-.++-. ++ ..|.+.-.++|++|+++
T Consensus 5 kIYLAGP~F~~~q--~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~v 82 (157)
T 1f8y_A 5 TIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIM 82 (157)
T ss_dssp CEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEE
Confidence 36666 23222 4578999999999885 6666433111 11 12233334679999999
Q ss_pred EEEEecCCCCChhhHHHHHHHHHhhccCCCceeEEEE
Q 041427 78 IVILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVF 114 (158)
Q Consensus 78 IvvlS~~~~~S~wc~~El~~~~~~~~~~~~~~iiPV~ 114 (158)
|.++...- .+.-+..|+..+... +++|+-+.
T Consensus 83 vA~ldg~~-~D~GT~~EiGyA~A~-----gkPVv~~~ 113 (157)
T 1f8y_A 83 LGVYIPDE-EDVGLGMELGYALSQ-----GKYVLLVI 113 (157)
T ss_dssp EEECCGGG-CCHHHHHHHHHHHHT-----TCEEEEEE
T ss_pred EEEcCCCC-CCccHHHHHHHHHHC-----CCeEEEEE
Confidence 99998433 456788999999888 88887664
No 19
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=64.47 E-value=17 Score=24.59 Aligned_cols=37 Identities=11% Similarity=-0.094 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhh
Q 041427 35 FTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIE 72 (158)
Q Consensus 35 fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~ 72 (158)
+...+.+.+++..-.+++-.-.+ +.+.+.+.+.++.+
T Consensus 15 ~~~~~~~~i~~A~~~I~i~~~~~-~~~~i~~aL~~a~~ 51 (155)
T 1byr_A 15 ARVLVLSAIDSAKTSIRMMAYSF-TAPDIMKALVAAKK 51 (155)
T ss_dssp HHHHHHHHHHHCSSEEEEEESSB-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhEEEEEEEEe-CCHHHHHHHHHHHH
Confidence 44555666654433333322222 23344444444443
No 20
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=64.28 E-value=16 Score=25.22 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhh-hhcceEEE
Q 041427 33 NNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAI-EESNVSIV 79 (158)
Q Consensus 33 ~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i-~~s~~~Iv 79 (158)
..++..+...|...|+++=+|.. ..++.+...|.++- .+.-+.++
T Consensus 21 ~~YA~~V~~~L~~~GiRvevD~~--r~~e~Lg~kIR~a~~~kvPy~lV 66 (130)
T 1v95_A 21 KDYAESVGRKVRDLGMVVDLIFL--NTEVSLSQALEDVSRGGSPFAIV 66 (130)
T ss_dssp GHHHHHHHHHHHTTTCCEEEEEC--TTSSCHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEecC--CCCCcHHHHHHHHHHcCCCEEEE
Confidence 57999999999999999999763 22556666666653 34444444
No 21
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=63.40 E-value=5.4 Score=24.72 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCeEEEecCCCCC---CCccccHHHHHhhhhc
Q 041427 36 TDHLHVALIRNGFVAFKDDETLD---RGNEISSELSKAIEES 74 (158)
Q Consensus 36 v~~L~~~L~~~gi~vf~d~~~l~---~G~~i~~~i~~~i~~s 74 (158)
+..|...|++.||++|.|...+. |-..+..++...+...
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~ 48 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGA 48 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHH
Confidence 34677899999999999987664 4455666777666543
No 22
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=54.64 E-value=25 Score=28.22 Aligned_cols=61 Identities=10% Similarity=0.141 Sum_probs=40.4
Q ss_pred CceeEEEecccCcCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEec
Q 041427 18 TKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSK 83 (158)
Q Consensus 18 ~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~ 83 (158)
..++|+|---+++ ....+..|...|.+.|++|-+|.++ ..+...+..|-..---.++|+.+
T Consensus 297 ap~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~k~~~A~~~g~p~~iiiG~ 357 (401)
T 1evl_A 297 APVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVPYMLVCGD 357 (401)
T ss_dssp CSSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECCS----SCHHHHHHHHHHTTCSEEEEECH
T ss_pred CCeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHhcCCCEEEEECc
Confidence 3478887654443 3568899999999999999999753 34555555554433334555554
No 23
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=54.62 E-value=38 Score=27.42 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=38.9
Q ss_pred ceeEEEecccCcCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhh-hcceEEEEEec
Q 041427 19 KYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIE-ESNVSIVILSK 83 (158)
Q Consensus 19 ~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~-~s~~~IvvlS~ 83 (158)
.+||+|..-+++. ...+..|.+.|.+.|++|-+|.++ ..+...+..|-. ... .++|+.+
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~~-~~iiiG~ 391 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIME----RGLSAQLKYASAIGAD-FAVIFGE 391 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCSC----CCHHHHHHHHHHTTCS-EEEEEEH
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecCC----CCHHHHHHHHHHCCCC-EEEEECc
Confidence 4789866544443 467899999999999999998754 344445555433 444 4555554
No 24
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=51.08 E-value=29 Score=28.64 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=42.1
Q ss_pred CceeEEEecccCcCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecC
Q 041427 18 TKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKN 84 (158)
Q Consensus 18 ~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~ 84 (158)
...||+|-.-+++. ...+..|.+.|.+.|++|-+|.++ ..+...+..|-..---.++|+.++
T Consensus 370 ~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~~----~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 370 TPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFEK----RQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp CSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCSC----CCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeCC----CCHHHHHHHHHHcCCCEEEEECch
Confidence 35789986644443 467899999999999999998753 344445555544444456666654
No 25
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=49.78 E-value=42 Score=27.99 Aligned_cols=63 Identities=14% Similarity=0.067 Sum_probs=40.7
Q ss_pred CCceeEEEecccCcCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEec
Q 041427 17 QTKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSK 83 (158)
Q Consensus 17 ~~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~ 83 (158)
....||||..-+++. ...+-.|...|.+.|+++-+|.. .+..+..++..|-+.---.++|+.+
T Consensus 417 ~~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~~viiG~ 479 (517)
T 4g85_A 417 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIPLVAIIGE 479 (517)
T ss_dssp SCCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECSS---SSCCHHHHHHHHHHHCCCEEEEECH
T ss_pred CCCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCCEEEEECC
Confidence 346789987755543 45678999999999999987642 2334555565554433335555554
No 26
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=48.91 E-value=54 Score=27.36 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=35.3
Q ss_pred cCchhHHHHHHHHHhcCCeEEE--ecCC-CCCCCccccHHHHHhhhhcceEEEEEecCCCC
Q 041427 30 DTRNNFTDHLHVALIRNGFVAF--KDDE-TLDRGNEISSELSKAIEESNVSIVILSKNYAS 87 (158)
Q Consensus 30 D~~~~fv~~L~~~L~~~gi~vf--~d~~-~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~ 87 (158)
|.-..++..|++.|++.||+|. +|++ +-.+|. .+.++=..---.++++.++-+.
T Consensus 361 e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr~~~siGk----K~r~Ad~iGiPy~IiVG~kEle 417 (459)
T 3ikl_A 361 LELRQVCQGLFNELLENGISVWPGYLETMQSSLEQ----LYSKYDEMSILFTVLVTETTLE 417 (459)
T ss_dssp TTHHHHHHHHHHHHHHTSCCEECGGGSSSCCTTHH----HHHHHGGGTCSEEEEECTTSTT
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeecCCcCCCHHH----HHHHHHHcCCCEEEEECchhhh
Confidence 3346789999999999999999 7765 444444 3444433333356667766554
No 27
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=47.86 E-value=41 Score=27.33 Aligned_cols=62 Identities=15% Similarity=0.068 Sum_probs=40.0
Q ss_pred CceeEEEecccCcCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEec
Q 041427 18 TKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSK 83 (158)
Q Consensus 18 ~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~ 83 (158)
...||+|...+++. ...+-.|...|.+.|+++-+|.. .+..+..++..|-..---.++|+.+
T Consensus 365 ~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~~viiG~ 426 (464)
T 4g84_A 365 TETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIPLVAIIGE 426 (464)
T ss_dssp CCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCSC---SSCCHHHHHHHHHHHTCCEEEECCH
T ss_pred ccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCCEEEEECc
Confidence 45789998766553 45678999999999999987642 2334555565554433334555544
No 28
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=47.79 E-value=27 Score=28.12 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=39.4
Q ss_pred CceeEEEecccCcCchhHHHHHHHHHhcC--CeEEEecCCCCCCCccccHHHHHhhh-hcceEEEEEec
Q 041427 18 TKYDVFLSFRGEDTRNNFTDHLHVALIRN--GFVAFKDDETLDRGNEISSELSKAIE-ESNVSIVILSK 83 (158)
Q Consensus 18 ~~ydVFISys~~D~~~~fv~~L~~~L~~~--gi~vf~d~~~l~~G~~i~~~i~~~i~-~s~~~IvvlS~ 83 (158)
..+||+|-.-+++ ....+..|.+.|.+. |++|-+|.++ ..+...+..|-. ... .++++.+
T Consensus 326 ~p~~v~i~~~~~~-~~~~a~~l~~~Lr~~~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p-~~iiiG~ 388 (423)
T 1htt_A 326 PVVDIYLVASGAD-TQSAAMALAERLRDELPGVKLMTNHGG----GNFKKQFARADKWGAR-VAVVLGE 388 (423)
T ss_dssp CSCSEEEEECSTT-HHHHHHHHHHHHHHHSTTCCEEECCSC----CCHHHHHHHHHHHTCS-EEEEECH
T ss_pred CCCcEEEEEcCHH-HHHHHHHHHHHHHcCCCCcEEEEeCCC----CCHHHHHHHHHHcCCC-EEEEECc
Confidence 4578988775543 346789999999999 9999998764 344445555433 344 4444543
No 29
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=46.31 E-value=50 Score=27.26 Aligned_cols=61 Identities=13% Similarity=-0.030 Sum_probs=41.6
Q ss_pred CceeEEEecccCcCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEec
Q 041427 18 TKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSK 83 (158)
Q Consensus 18 ~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~ 83 (158)
...||||..-+++. ...+-.+...|.+.|+++-+|.. +..+...+..|-+.--..++++.+
T Consensus 360 ~~~~v~v~~~~~~~-~~~a~~la~~LR~~Gi~ve~~~~----~~slkkq~k~A~k~ga~~vviiGe 420 (456)
T 3lc0_A 360 HVVDDVVIPFDESM-RPHALAVLRRLRDAGRSADIILD----KKKVVQAFNYADRVGAVRAVLVAP 420 (456)
T ss_dssp CCEEEEEEESSGGG-HHHHHHHHHHHHHTTCCEEECCS----CCCHHHHHHHHHHTTEEEEEEECH
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHHCCCeEEEecC----CCCHHHHHHHHHHcCCCEEEEECC
Confidence 34788876655553 35678899999999999998754 234666666666655556666664
No 30
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=44.59 E-value=60 Score=21.30 Aligned_cols=69 Identities=10% Similarity=0.158 Sum_probs=43.6
Q ss_pred HHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCCCChhhHHHHHHHHHhhccCCCceeEEEEEecCC
Q 041427 40 HVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVFYGVDP 119 (158)
Q Consensus 40 ~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~S~wc~~El~~~~~~~~~~~~~~iiPV~~~v~p 119 (158)
.-.+...|+.+|.. ...+.+.+.+.+.+++-++.|++++++.+. .+.+++..... ...+|+++.+..
T Consensus 15 v~GFrLaGi~~~~v----~~~ee~~~~~~~l~~~~digIIlIte~~a~--~i~~~i~~~~~-------~~~~P~Il~IPs 81 (109)
T 2d00_A 15 AQGFRLAGLEGYGA----SSAEEAQSLLETLVERGGYALVAVDEALLP--DPERAVERLMR-------GRDLPVLLPIAG 81 (109)
T ss_dssp HHHHHHTTSEEEEC----SSHHHHHHHHHHHHHHCCCSEEEEETTTCS--CHHHHHHHHTT-------CCCCCEEEEESC
T ss_pred HHHHHHcCCeEEEe----CCHHHHHHHHHHHhhCCCeEEEEEeHHHHH--hhHHHHHHHHh-------CCCCeEEEEECC
Confidence 34556678888754 233556666777777889999999999998 34444444321 133666666544
Q ss_pred ch
Q 041427 120 TD 121 (158)
Q Consensus 120 ~~ 121 (158)
.+
T Consensus 82 ~~ 83 (109)
T 2d00_A 82 LK 83 (109)
T ss_dssp GG
T ss_pred Cc
Confidence 44
No 31
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=43.64 E-value=6.6 Score=25.09 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=16.3
Q ss_pred EecccCcCchhHHHHHHHHHhcCC
Q 041427 24 LSFRGEDTRNNFTDHLHVALIRNG 47 (158)
Q Consensus 24 ISys~~D~~~~fv~~L~~~L~~~g 47 (158)
.|||+...+..|+..|.+.|++++
T Consensus 22 ~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 22 VSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp CCCEETTTEEHHHHHHHHHHHHHT
T ss_pred EeeEcCCCCCHHHHHHHHHHHHhC
Confidence 344444445669999999997654
No 32
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=43.41 E-value=39 Score=27.95 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=42.3
Q ss_pred ceeEEEecccCcCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEec
Q 041427 19 KYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSK 83 (158)
Q Consensus 19 ~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~ 83 (158)
..||+|-.-+++. ...+..+.+.|.+.|++|-+|...-..+..+...+..|-+.---+++|+.+
T Consensus 354 p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG~ 417 (467)
T 4e51_A 354 GVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGE 417 (467)
T ss_dssp CCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEECH
T ss_pred CCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEECc
Confidence 4688876544432 457889999999999999998641112456666676665544445566654
No 33
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=42.99 E-value=29 Score=29.12 Aligned_cols=63 Identities=14% Similarity=0.041 Sum_probs=40.3
Q ss_pred CceeEEEecc-c-Cc--CchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecC
Q 041427 18 TKYDVFLSFR-G-ED--TRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKN 84 (158)
Q Consensus 18 ~~ydVFISys-~-~D--~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~ 84 (158)
..|+|+|--- . ++ .-...+..|.+.|.+.|++|-+|+++-.+|. .+.++-..---+++++.++
T Consensus 313 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~----k~~~a~~~G~p~~iiiG~~ 379 (501)
T 1nj1_A 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGR----KYYEWEMRGVPLRVEIGPR 379 (501)
T ss_dssp SSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHH----HHHHHHHEECSEEEEECHH
T ss_pred cCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHH----HHHHHHhcCCCEEEEECcc
Confidence 3478877654 3 21 2356889999999999999999987544444 4444433333345566654
No 34
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=40.42 E-value=28 Score=27.94 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=39.0
Q ss_pred CceeEEEecccCcCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEec
Q 041427 18 TKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSK 83 (158)
Q Consensus 18 ~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~ 83 (158)
..++|+|-.-+++ ....+..|.+.|.+.|++|-+|.++ ..+...+..+-..---.++++.+
T Consensus 328 ~p~~v~i~~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p~~iiig~ 388 (420)
T 1qe0_A 328 ENLDLFIVTMGDQ-ADRYAVKLLNHLRHNGIKADKDYLQ----RKIKGQMKQADRLGAKFTIVIGD 388 (420)
T ss_dssp CCCSEEEEECHHH-HHHHHHHHHHHHHTTTCCEEECCSC----CCHHHHHHHHHHTTCSEEEEECH
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHHCCCEEEEecCC----CCHHHHHHHHHHcCCCEEEEECc
Confidence 3478887654433 2457889999999999999998753 34444555543332334555554
No 35
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=38.93 E-value=7.7 Score=25.10 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=19.4
Q ss_pred ceeEEEecc---------cCcCchhHHHHHHHHHhcCC
Q 041427 19 KYDVFLSFR---------GEDTRNNFTDHLHVALIRNG 47 (158)
Q Consensus 19 ~ydVFISys---------~~D~~~~fv~~L~~~L~~~g 47 (158)
.-|.+++|+ +.+.+..|+..|.+.|+++|
T Consensus 10 ~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 10 EADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp TTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHhC
Confidence 567777665 33334568888888887654
No 36
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=38.15 E-value=20 Score=29.61 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=38.4
Q ss_pred ceeEEEeccc-C-cCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecC
Q 041427 19 KYDVFLSFRG-E-DTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKN 84 (158)
Q Consensus 19 ~ydVFISys~-~-D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~ 84 (158)
.++|+|---. + +.....+..|++.|++.|++|-+|+++-.+|. .+..+-..---.++|+.++
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g~----k~~~ad~~g~p~~iivG~~ 428 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAGA----KFATADLIGIPWQIHVGPR 428 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHH----HHHHHHHHTCSEEEEECHH
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHHH----HHHHHHhcCCCEEEEECCc
Confidence 4788776332 2 22356789999999999999999986433444 4444422222245555544
No 37
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=37.83 E-value=7.5 Score=25.12 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=20.0
Q ss_pred CceeEEEecccC---------cCchhHHHHHHHHHhcCC
Q 041427 18 TKYDVFLSFRGE---------DTRNNFTDHLHVALIRNG 47 (158)
Q Consensus 18 ~~ydVFISys~~---------D~~~~fv~~L~~~L~~~g 47 (158)
..-|++++|+.. +.+..|+..|.+.|++.|
T Consensus 11 ~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 11 DEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp TTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHG
T ss_pred CCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHhC
Confidence 356788777533 334558888888887654
No 38
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=37.78 E-value=74 Score=27.89 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=41.5
Q ss_pred ceeEEEecccCc-CchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecC
Q 041427 19 KYDVFLSFRGED-TRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKN 84 (158)
Q Consensus 19 ~ydVFISys~~D-~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~ 84 (158)
.++|+|---+++ .-...+..|...|.+.|++|.+|.++ ..+...+.++-..---+++++.++
T Consensus 559 P~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~~----~sigkk~k~Ad~~G~p~~IiIG~~ 621 (693)
T 2zt5_A 559 PFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSS----GSIGRRYARTDEIGVAFGVTIDFD 621 (693)
T ss_dssp SCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCCC----SCHHHHHHHHHHTTCCEEEEECHH
T ss_pred CCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEEcch
Confidence 478887654443 23578899999999999999999753 344445555544334456666654
No 39
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=37.08 E-value=18 Score=23.71 Aligned_cols=66 Identities=20% Similarity=0.366 Sum_probs=40.3
Q ss_pred HHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCCCChhhHHHHHHHHHhhccCCCceeEEEEEecC
Q 041427 41 VALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVFYGVD 118 (158)
Q Consensus 41 ~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~S~wc~~El~~~~~~~~~~~~~~iiPV~~~v~ 118 (158)
-.+...|+..+.+. ..-+.+.+.+.+.+++-++.|++++++.+.. +.+++.... ....+|.++.+.
T Consensus 22 ~GFrLaGi~~~~~~---~~~ee~~~~~~~l~~~~digIIlIte~ia~~--i~~~i~~~~-------~~~~~P~IieIP 87 (102)
T 2i4r_A 22 IGFMLAGISDIYEV---TSDEEIVKAVEDVLKRDDVGVVIMKQEYLKK--LPPVLRREI-------DEKVEPTFVSVG 87 (102)
T ss_dssp HHHHHTTCCCEEEC---CSHHHHHHHHHHHHHCSSEEEEEEEGGGSTT--SCHHHHTTT-------TTCCSSEEEEEC
T ss_pred HHHHHcCCCcccCC---CCHHHHHHHHHHHhhCCCeEEEEEeHHHHHH--HHHHHHHHH-------hCCCccEEEEEC
Confidence 34556687776621 2234566667777888899999999998873 333333321 223666666544
No 40
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=36.48 E-value=57 Score=27.44 Aligned_cols=63 Identities=10% Similarity=0.207 Sum_probs=40.5
Q ss_pred ceeEEEeccc-C-cCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCC
Q 041427 19 KYDVFLSFRG-E-DTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNY 85 (158)
Q Consensus 19 ~ydVFISys~-~-D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~ 85 (158)
.++|+|---+ + +.....+..|.+.|.+.|+++-+|+++ ..+...+..|-..---.++|+.++-
T Consensus 470 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~~----~~~g~k~~~a~~~g~p~~iivG~~e 534 (572)
T 2j3l_A 470 PFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRN----ERAGVKFADADLIGCPIRITVGKKA 534 (572)
T ss_dssp SCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECSS----CCHHHHHHHHHHHCCSEEEEECGGG
T ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCCC----CCHhHHHHHHHhcCCCEEEEEcccc
Confidence 3788876543 2 222467899999999999999999864 3444455555443333555666543
No 41
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=35.18 E-value=9.6 Score=25.00 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=20.7
Q ss_pred CCceeEEEecccC---------cCchhHHHHHHHHHhcCC
Q 041427 17 QTKYDVFLSFRGE---------DTRNNFTDHLHVALIRNG 47 (158)
Q Consensus 17 ~~~ydVFISys~~---------D~~~~fv~~L~~~L~~~g 47 (158)
+..-|.+++|+.. ..+..|+..|.+.|+++|
T Consensus 14 P~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 14 PVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp CTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 3457888877633 233568888888887654
No 42
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=34.79 E-value=92 Score=21.88 Aligned_cols=74 Identities=11% Similarity=0.095 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCCCChhhHHHHHHHHHhhc------cCC
Q 041427 33 NNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGN------KRN 106 (158)
Q Consensus 33 ~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~S~wc~~El~~~~~~~~------~~~ 106 (158)
+..++.+.+.|+..++.+-. . +.+.+.+...+.+++.+|+. ||-|..+. -.++..+++++. .-.
T Consensus 21 ~~lA~~ia~~l~~~~~~v~~----~---~~~~~~~~~~l~~~D~ii~g-sP~y~g~~--~~~~k~fld~~~~~~~~~~l~ 90 (193)
T 3d7n_A 21 HRMAEAVAEGAEATLHAIDA----E---GNLSEDGWAALDAADAIIFG-TPTYMGGP--SWQFKKFADASSKPWFSAKWQ 90 (193)
T ss_dssp HHHHHHHHHHHTCEEEECCT----T---SCCCHHHHHHHHHCSEEEEE-EEEETTEE--CHHHHHHHHHTHHHHHTTTTT
T ss_pred HHHHHHHHHHhhhcceEeee----c---CCCCHhHHHHHHHCCEEEEE-eCccCCCc--cHHHHHHHHHhhhhccccccC
Confidence 56788888888876654421 1 12333455677888876554 88887542 345666665532 234
Q ss_pred CceeEEEEEe
Q 041427 107 DRKVFAVFYG 116 (158)
Q Consensus 107 ~~~iiPV~~~ 116 (158)
++++.++--.
T Consensus 91 gK~~~~f~s~ 100 (193)
T 3d7n_A 91 DKVFGGFTNS 100 (193)
T ss_dssp TCEEEEEEEE
T ss_pred CCEEEEEEEC
Confidence 5666555443
No 43
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=34.63 E-value=31 Score=23.04 Aligned_cols=50 Identities=10% Similarity=0.219 Sum_probs=33.9
Q ss_pred HHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCCCChhhHHHHHH
Q 041427 41 VALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAK 97 (158)
Q Consensus 41 ~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~S~wc~~El~~ 97 (158)
-.+...|+.+|.. ..-+.+.+.+.+.+++ ++.|++++++.+.. +.+++..
T Consensus 15 ~GFrLaGie~~~v----~~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~ 64 (115)
T 3aon_B 15 SPFRLFGFDVQHG----TTKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER 64 (115)
T ss_dssp GGGGGGTCEEECC----CSHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH
T ss_pred HHHHHcCCeEEEe----CCHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH
Confidence 3456678888743 2235566667777777 99999999998863 4455544
No 44
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=34.41 E-value=10 Score=24.99 Aligned_cols=29 Identities=7% Similarity=0.181 Sum_probs=19.5
Q ss_pred ceeEEEeccc---------CcCchhHHHHHHHHHhcCC
Q 041427 19 KYDVFLSFRG---------EDTRNNFTDHLHVALIRNG 47 (158)
Q Consensus 19 ~ydVFISys~---------~D~~~~fv~~L~~~L~~~g 47 (158)
.-|++++|+. ......|+..|.+.|++++
T Consensus 14 ~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 14 RSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp SCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHHHHC
Confidence 5677777653 3334568899998887654
No 45
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=33.29 E-value=80 Score=27.25 Aligned_cols=63 Identities=10% Similarity=0.124 Sum_probs=41.1
Q ss_pred ceeEEEecccCcCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCC
Q 041427 19 KYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYA 86 (158)
Q Consensus 19 ~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~ 86 (158)
.++|+|---+++ ....+..|.+.|.+.|++|-+|.++ ..+...+.++-..---.++|+.++-+
T Consensus 539 P~qv~vipi~~~-~~~~a~~v~~~L~~~Gi~v~~D~~~----~~~g~kir~a~~~g~p~~ivvG~~E~ 601 (642)
T 1qf6_A 539 PVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVPYMLVCGDKEV 601 (642)
T ss_dssp SSCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEECCS----SCHHHHHHHHHHTTCSEEEEECTTTG
T ss_pred CceEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEECchhh
Confidence 477876543332 3568899999999999999999864 34444555553333335666666543
No 46
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=33.08 E-value=55 Score=28.15 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=38.5
Q ss_pred ceeEEEecccCcCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhh-hcceEEEEEec
Q 041427 19 KYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIE-ESNVSIVILSK 83 (158)
Q Consensus 19 ~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~-~s~~~IvvlS~ 83 (158)
.++|+|---+.+.....+..|.+.|.+.|++|-+|.++ ..+...+.+|-. ... .++|+.+
T Consensus 545 p~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~----~~~g~k~~~a~~~g~p-~~iivG~ 605 (645)
T 1nyr_A 545 PKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRN----EKMGYKIREAQMQKIP-YQIVVGD 605 (645)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSS----CCHHHHHHHHHHHTCS-EEEEECH
T ss_pred CceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECCC----CCHHHHHHHHHhcCCC-EEEEEcc
Confidence 36777654331223568899999999999999999864 345555555533 333 4555553
No 47
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=32.57 E-value=81 Score=24.09 Aligned_cols=69 Identities=16% Similarity=0.086 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCCCChhhHHHHHHHHHhhc
Q 041427 33 NNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGN 103 (158)
Q Consensus 33 ~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~S~wc~~El~~~~~~~~ 103 (158)
..++.++.+.|...|+.+-...+.+--|.-+. +...-.+.++=||-+|-+...+.--..+|.+++..++
T Consensus 95 peLA~~i~~~l~~~g~~~~~~~~glDHG~~vP--L~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lr 163 (271)
T 2pw6_A 95 PALAQRLVELLAPIPVTLDKEAWGFDHGSWGV--LIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALR 163 (271)
T ss_dssp HHHHHHHHHHHTTSCEEEESSCCCCCHHHHHH--HHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchhhh--HHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 57999999999999997654333343343222 2222345667788888887777766679999997743
No 48
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=32.07 E-value=57 Score=23.33 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=24.4
Q ss_pred EEEecccCcCc--hhHHHHHHHHHhcCCeEEEec
Q 041427 22 VFLSFRGEDTR--NNFTDHLHVALIRNGFVAFKD 53 (158)
Q Consensus 22 VFISys~~D~~--~~fv~~L~~~L~~~gi~vf~d 53 (158)
.||.+-+-|.. .+-+..|.+.|+.+|+.+.+-
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 37888666643 567889999999999887653
No 49
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=31.72 E-value=1.1e+02 Score=20.03 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=36.2
Q ss_pred CCCCceeEEEecccCcCchhHHHHHHHHHhcCCeEEE-ecCCCCCCCccccHHHHHhhhhc--ceEEEEEecCCCC
Q 041427 15 ILQTKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAF-KDDETLDRGNEISSELSKAIEES--NVSIVILSKNYAS 87 (158)
Q Consensus 15 ~~~~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf-~d~~~l~~G~~i~~~i~~~i~~s--~~~IvvlS~~~~~ 87 (158)
.......|.|-- ....+...|...|++.|+.+. .-.. + .+..+.+.+. ..-++++.-+...
T Consensus 32 ~~~~~~~Ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~----~----~~al~~l~~~~~~~dliilD~~l~~ 95 (157)
T 3hzh_A 32 DTGIPFNVLIVD----DSVFTVKQLTQIFTSEGFNIIDTAAD----G----EEAVIKYKNHYPNIDIVTLXITMPK 95 (157)
T ss_dssp TTTEECEEEEEC----SCHHHHHHHHHHHHHTTCEEEEEESS----H----HHHHHHHHHHGGGCCEEEECSSCSS
T ss_pred CCCCceEEEEEe----CCHHHHHHHHHHHHhCCCeEEEEECC----H----HHHHHHHHhcCCCCCEEEEeccCCC
Confidence 444567887742 224577889999999998875 2221 1 2334445555 5556666655443
No 50
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=31.39 E-value=41 Score=15.66 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=11.7
Q ss_pred CHHHHHHHHHHHHHh
Q 041427 134 NHEKVLKWRAALTRV 148 (158)
Q Consensus 134 ~~~~~~~W~~al~~i 148 (158)
..|.+++|.+-|.-.
T Consensus 6 qvDSV~rWmeDLr~M 20 (22)
T 3ro3_B 6 QVDSVQRWMEDLKLM 20 (26)
T ss_pred hhHHHHHHHHHHHhh
Confidence 368899999888654
No 51
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=29.50 E-value=32 Score=22.37 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHhcCCeEE
Q 041427 33 NNFTDHLHVALIRNGFVA 50 (158)
Q Consensus 33 ~~fv~~L~~~L~~~gi~v 50 (158)
..|+..|...|..+||+|
T Consensus 9 q~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV 26 (94)
T ss_pred hHHHHHHHHHHHHcCeee
Confidence 469999999999999999
No 52
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=29.35 E-value=1.4e+02 Score=20.67 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCC--------------CCChhhHHHHHHHHH
Q 041427 35 FTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNY--------------ASSPWCLDELAKIVE 100 (158)
Q Consensus 35 fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~--------------~~S~wc~~El~~~~~ 100 (158)
-+..|...|+..|+.+..-+.++...+ ...+.+..++...-|+|-+.-. ..-+|-..++.....
T Consensus 58 ~~~~l~~~L~~~g~~~~~lhg~~~~~~--r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~G 135 (185)
T 2jgn_A 58 GADSLEDFLYHEGYACTSIHGDRSQRD--REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIG 135 (185)
T ss_dssp HHHHHHHHHHHTTCCEEEEC----------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCceEEEeCCCCHHH--HHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHcc
Confidence 467777888878877655443343322 1234444444444444444321 134666777777776
Q ss_pred hhccCCCceeEEEEEecCCchh
Q 041427 101 CGNKRNDRKVFAVFYGVDPTDR 122 (158)
Q Consensus 101 ~~~~~~~~~iiPV~~~v~p~~v 122 (158)
+..+.+.....-+|+. +.+.
T Consensus 136 R~~R~g~~g~~~~~~~--~~~~ 155 (185)
T 2jgn_A 136 RTGRVGNLGLATSFFN--ERNI 155 (185)
T ss_dssp TBCCTTSCEEEEEEEC--GGGG
T ss_pred ccCCCCCCcEEEEEEc--hhhH
Confidence 6455544444444543 4454
No 53
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=29.19 E-value=15 Score=24.75 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=19.3
Q ss_pred ceeEEEeccc---------CcCchhHHHHHHHHHhcCC
Q 041427 19 KYDVFLSFRG---------EDTRNNFTDHLHVALIRNG 47 (158)
Q Consensus 19 ~ydVFISys~---------~D~~~~fv~~L~~~L~~~g 47 (158)
.-|++++|+. ......|+..|.+.|++.+
T Consensus 15 ~aDfLi~yST~pG~vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 15 EADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp TTTEEEEESSCTTBCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCCEeeEeCCCCCccHHHHHHHHHHhC
Confidence 4677777653 3334568899988887654
No 54
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=28.79 E-value=33 Score=28.56 Aligned_cols=63 Identities=16% Similarity=0.080 Sum_probs=39.5
Q ss_pred CceeEEEecccC-c---CchhHHHHHHHHHhcCCeEEEecCC-CCCCCccccHHHHHhhhhcceEEEEEecC
Q 041427 18 TKYDVFLSFRGE-D---TRNNFTDHLHVALIRNGFVAFKDDE-TLDRGNEISSELSKAIEESNVSIVILSKN 84 (158)
Q Consensus 18 ~~ydVFISys~~-D---~~~~fv~~L~~~L~~~gi~vf~d~~-~l~~G~~i~~~i~~~i~~s~~~IvvlS~~ 84 (158)
..++|+|---.+ | .-...+..|.+.|.+.|++|-+|++ +-.+|. .+.++-..---+++++.++
T Consensus 286 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~s~g~----k~~~a~~~G~p~~iiiG~~ 353 (477)
T 1hc7_A 286 APIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGY----KFHEWELKGVPFRVELGPK 353 (477)
T ss_dssp CSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHH----HHHHHHHTTCSEEEEECHH
T ss_pred CCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCHHH----HHHHHhhcCCCEEEEECcc
Confidence 347887765432 2 1246789999999999999999986 544444 4444433222345555553
No 55
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=28.70 E-value=21 Score=30.28 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHhcC-CeEEEecCC-CCCCCccccH
Q 041427 33 NNFTDHLHVALIRN-GFVAFKDDE-TLDRGNEISS 65 (158)
Q Consensus 33 ~~fv~~L~~~L~~~-gi~vf~d~~-~l~~G~~i~~ 65 (158)
..++..|++.|... |++|-+|++ +-.+|..+.+
T Consensus 322 ~~~a~~l~~~L~~~~Girv~~Ddr~~~s~G~K~~~ 356 (518)
T 3ial_A 322 LGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLYY 356 (518)
T ss_dssp HHHHHHHHHHHHHTTCCCEEECCCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCeEEEEECCCCCCHHHHHHH
Confidence 45789999999999 999999998 6677765543
No 56
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=28.59 E-value=72 Score=26.66 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=40.0
Q ss_pred ceeEEEecccC-c-CchhHHHHHHHHHhcCC-eEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecC
Q 041427 19 KYDVFLSFRGE-D-TRNNFTDHLHVALIRNG-FVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKN 84 (158)
Q Consensus 19 ~ydVFISys~~-D-~~~~fv~~L~~~L~~~g-i~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~ 84 (158)
.++|+|---++ + .-...+..|...|++.| ++|-+|++ ..+...+.++-..---+++|+.++
T Consensus 398 P~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~~-----~sig~k~~~ad~~g~p~~iivG~~ 461 (505)
T 1ati_A 398 PIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDT-----GNIGKAYRRHDEVGTPFAVTVDYD 461 (505)
T ss_dssp SCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCC-----SCHHHHHHHHHHTTCSEEEEECHH
T ss_pred CceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECCC-----CCHHHHHHHHHHCCCCEEEEEChH
Confidence 47888765443 1 22567899999999999 99999874 245555555544333455556554
No 57
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=27.65 E-value=1.3e+02 Score=19.52 Aligned_cols=46 Identities=4% Similarity=0.183 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHhcCCeEEEe-cCCCCCCCccccHHHHHhhhhcceEEEEEecCCCCC
Q 041427 33 NNFTDHLHVALIRNGFVAFK-DDETLDRGNEISSELSKAIEESNVSIVILSKNYASS 88 (158)
Q Consensus 33 ~~fv~~L~~~L~~~gi~vf~-d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~S 88 (158)
+.+++.|.+.|+..|+.+-+ |-.+.. ...+.+.+. |++.+|.|..+
T Consensus 13 ~~iA~~ia~~l~~~g~~v~~~~~~~~~---------~~~l~~~d~-iiig~pty~~g 59 (138)
T 5nul_A 13 EKMAELIAKGIIESGKDVNTINVSDVN---------IDELLNEDI-LILGCSAMTDE 59 (138)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEGGGCC---------HHHHTTCSE-EEEEECCBTTT
T ss_pred HHHHHHHHHHHHHCCCeEEEEEhhhCC---------HHHHhhCCE-EEEEcCccCCC
Confidence 67899999999988875432 322211 123455554 55567777754
No 58
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=27.57 E-value=62 Score=24.53 Aligned_cols=69 Identities=20% Similarity=0.186 Sum_probs=38.9
Q ss_pred HHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCCCChhhHHHHHHHHHhhccCCCce
Q 041427 39 LHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRNDRK 109 (158)
Q Consensus 39 L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~S~wc~~El~~~~~~~~~~~~~~ 109 (158)
|...+...|.--++|-+ +..++.+..++.+..++..+ -+|+|-+-++..|-.+|+...+..+...+...
T Consensus 104 ll~~~~~~~~~d~iDvE-l~~~~~~~~~l~~~a~~~~~-kiI~S~Hdf~~TP~~~el~~~~~~~~~~gaDI 172 (258)
T 4h3d_A 104 LNKEISNTGLVDLIDVE-LFMGDEVIDEVVNFAHKKEV-KVIISNHDFNKTPKKEEIVSRLCRMQELGADL 172 (258)
T ss_dssp HHHHHHHTTCCSEEEEE-GGGCHHHHHHHHHHHHHTTC-EEEEEEEESSCCCCHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHhcCCchhhHHh-hhccHHHHHHHHHHHHhCCC-EEEEEEecCCCCCCHHHHHHHHHHHHHhCCCE
Confidence 33444444544455543 44444444445444444443 44567776677777889988888755555443
No 59
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=26.97 E-value=1.4e+02 Score=23.11 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=40.8
Q ss_pred CeEEEecCCCCCCCccccHHHHHhhh------hcceEEEEEecCCCCChhhHHHHHHHHHhhccCCCceeEEEEEe
Q 041427 47 GFVAFKDDETLDRGNEISSELSKAIE------ESNVSIVILSKNYASSPWCLDELAKIVECGNKRNDRKVFAVFYG 116 (158)
Q Consensus 47 gi~vf~d~~~l~~G~~i~~~i~~~i~------~s~~~IvvlS~~~~~S~wc~~El~~~~~~~~~~~~~~iiPV~~~ 116 (158)
|...|+|-+.. ....+..+|..... ..+.+|+|=|=||..+ .+|..++.. --.-...++-|++.
T Consensus 68 ~ad~FI~a~~k-sl~~i~~eI~s~~p~~~~~~~~k~LVIIDSLN~l~~----~~L~~FlsS-i~sP~~sLv~vYH~ 137 (270)
T 4a8j_B 68 YCTQFIDATQM-DFVHLVKQIISYLPAATATQAKKHMVIIDSLNYIST----EYITRFLSE-IASPHCTMVATYHK 137 (270)
T ss_dssp TCSEEEETTSS-CHHHHHHHHHHTCC-----CCCCEEEEESCGGGSCG----GGHHHHHHH-HCCTTEEEEEEEET
T ss_pred CCCeeeEcCCC-CHHHHHHHHHHhCCCccCCCCcceEEEEecCcchhh----hhHHHHHHH-hhcCCcEEEEEecC
Confidence 56667766532 23344444444332 2367999999999996 578787776 33446677777775
No 60
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=26.81 E-value=1.3e+02 Score=23.95 Aligned_cols=61 Identities=16% Similarity=0.023 Sum_probs=37.7
Q ss_pred CceeEEEecccCcCchhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecC
Q 041427 18 TKYDVFLSFRGEDTRNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKN 84 (158)
Q Consensus 18 ~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~ 84 (158)
..+||+|..-+++ ....+..|.+.|.+. ++|-+|.++- .+...+..|-..---.++++.++
T Consensus 327 ~p~~v~i~~~~~~-~~~~a~~l~~~Lr~~-i~v~~d~~~~----~~~~~~~~a~~~g~p~~iivG~~ 387 (421)
T 1h4v_B 327 KGPDLYLIPLTEE-AVAEAFYLAEALRPR-LRAEYALAPR----KPAKGLEEALKRGAAFAGFLGED 387 (421)
T ss_pred CCCeEEEEECChH-HHHHHHHHHHHHHhc-CEEEEecCCC----CHHHHHHHHHhCCCCEEEEECch
Confidence 4578988554443 245788999999999 9999987543 34444444433222345555543
No 61
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=26.63 E-value=33 Score=29.06 Aligned_cols=32 Identities=9% Similarity=-0.020 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHhcCCeEEEecCCCC-CCCcccc
Q 041427 33 NNFTDHLHVALIRNGFVAFKDDETL-DRGNEIS 64 (158)
Q Consensus 33 ~~fv~~L~~~L~~~gi~vf~d~~~l-~~G~~i~ 64 (158)
...+..|++.|.+.|++|-+|+++- .+|..+.
T Consensus 331 ~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~ 363 (519)
T 4hvc_A 331 IAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFN 363 (519)
T ss_dssp HHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999999999863 5666554
No 62
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=26.09 E-value=1.3e+02 Score=19.19 Aligned_cols=71 Identities=13% Similarity=0.047 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHhcCCeEEE-ecCCCCCCCccccHHHHHhhhhcceEEEEEecCCCCChhhHHHHHHHHHhhc-cCCCcee
Q 041427 33 NNFTDHLHVALIRNGFVAF-KDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGN-KRNDRKV 110 (158)
Q Consensus 33 ~~fv~~L~~~L~~~gi~vf-~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~S~wc~~El~~~~~~~~-~~~~~~i 110 (158)
+.+++.|.+.|+..|+.+- +|-.+.. ...+.+.+. |++.+|.|..+.--..++..+++++. .-.++++
T Consensus 14 ~~~a~~i~~~l~~~g~~v~~~~~~~~~---------~~~l~~~d~-vi~g~p~y~~~~~~~~~~~~fl~~l~~~l~~k~~ 83 (137)
T 2fz5_A 14 EAMANEIEAAVKAAGADVESVRFEDTN---------VDDVASKDV-ILLGCPAMGSEELEDSVVEPFFTDLAPKLKGKKV 83 (137)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTSCC---------HHHHHTCSE-EEEECCCBTTTBCCHHHHHHHHHHHGGGCSSCEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCC---------HHHHhcCCE-EEEEccccCCCCCCHHHHHHHHHHhhhhcCCCEE
Confidence 5688999999988887653 3332221 123555554 56668888665433223555555432 2234555
Q ss_pred EEE
Q 041427 111 FAV 113 (158)
Q Consensus 111 iPV 113 (158)
.++
T Consensus 84 ~~~ 86 (137)
T 2fz5_A 84 GLF 86 (137)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 63
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=25.10 E-value=25 Score=23.11 Aligned_cols=62 Identities=16% Similarity=0.289 Sum_probs=32.8
Q ss_pred CCCCChhhHHHHHHHHHhhccCCC---ceeEEEEEecCCchhhHHhhHHHhhhCHHHHHHHHHHHHH
Q 041427 84 NYASSPWCLDELAKIVECGNKRND---RKVFAVFYGVDPTDRVFAKYEEEFKENHEKVLKWRAALTR 147 (158)
Q Consensus 84 ~~~~S~wc~~El~~~~~~~~~~~~---~~iiPV~~~v~p~~v~f~~~~~~~~~~~~~~~~W~~al~~ 147 (158)
.|+--...-+|+..++.|-+--.+ .+|+|.-++-....++-..+..-+ --+.+.+|++||.-
T Consensus 36 syvytaqtedeietiitcrrylagnnllrvlpmhfkfkadkiagsanwtfy--akedfeqwkealdv 100 (135)
T 3dt5_A 36 SYVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKIAGSANWTFY--AKEDFEQWKEALDV 100 (135)
T ss_dssp SSCCCTTHHHHHHHHHHTTGGGSCHHHHHHCCSCCGGGEECCTTCSSEEES--SHHHHHHHHHHHHH
T ss_pred hHheeccchhHHHHHHHHHHHhcccchhhhcchheeeecchhccccceeEE--eHhhHHHHHHHHHH
Confidence 455556678899999987322223 367777665333333100000000 13556777777653
No 64
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=24.68 E-value=1e+02 Score=21.73 Aligned_cols=80 Identities=10% Similarity=0.039 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhcCCeEEE-ecCCCCCCCc----------------cccHHHHHhhhhcceEEEEEecCCCCChhhHHHH
Q 041427 33 NNFTDHLHVALIRNGFVAF-KDDETLDRGN----------------EISSELSKAIEESNVSIVILSKNYASSPWCLDEL 95 (158)
Q Consensus 33 ~~fv~~L~~~L~~~gi~vf-~d~~~l~~G~----------------~i~~~i~~~i~~s~~~IvvlS~~~~~S~wc~~El 95 (158)
+..++.+.+.|+..|..+- +|-.+..+.. .+...+...+.+++. |++-||-|..+- -..+
T Consensus 21 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~-ii~gsP~y~~~~--~~~l 97 (211)
T 1ydg_A 21 YAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEA-IVFSSPTRFGGA--TSQM 97 (211)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSE-EEEEEEEETTEE--CHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCE-EEEEcCccccCc--cHHH
Confidence 5688888999988887653 3432221110 111234556777775 556689887542 2235
Q ss_pred HHHHHhhc------cCCCceeEEEEE
Q 041427 96 AKIVECGN------KRNDRKVFAVFY 115 (158)
Q Consensus 96 ~~~~~~~~------~~~~~~iiPV~~ 115 (158)
..+++++. .-.++++.++.-
T Consensus 98 k~~ld~~~~~~~~~~l~gK~~~~~~t 123 (211)
T 1ydg_A 98 RAFIDTLGGLWSSGKLANKTFSAMTS 123 (211)
T ss_dssp HHHHHTTHHHHHTTTTTTCEEEEEEE
T ss_pred HHHHHHhccccccccCCCCEEEEEEe
Confidence 55555421 234566655544
No 65
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=24.49 E-value=18 Score=24.33 Aligned_cols=30 Identities=10% Similarity=0.173 Sum_probs=20.3
Q ss_pred CceeEEEecccC---------cCchhHHHHHHHHHhcCC
Q 041427 18 TKYDVFLSFRGE---------DTRNNFTDHLHVALIRNG 47 (158)
Q Consensus 18 ~~ydVFISys~~---------D~~~~fv~~L~~~L~~~g 47 (158)
..-|++++|+.. ..+..|+..|.+.|++.+
T Consensus 14 ~eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 14 TRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp SSCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHhC
Confidence 356777777543 234568889998887654
No 66
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=24.07 E-value=1.6e+02 Score=19.31 Aligned_cols=29 Identities=7% Similarity=0.085 Sum_probs=20.3
Q ss_pred CCc-cccHHHHHhhhhcceEEEEEecCCCC
Q 041427 59 RGN-EISSELSKAIEESNVSIVILSKNYAS 87 (158)
Q Consensus 59 ~G~-~i~~~i~~~i~~s~~~IvvlS~~~~~ 87 (158)
+|. .+.......+++++.+|+|++..-..
T Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 101 (179)
T 1z0f_A 72 AGQERFRAVTRSYYRGAAGALMVYDITRRS 101 (179)
T ss_dssp TTGGGTCHHHHHHHHTCSEEEEEEETTCHH
T ss_pred CCChHhhhhHHHHhccCCEEEEEEeCcCHH
Confidence 453 34445566789999999999976443
No 67
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=23.04 E-value=1.6e+02 Score=22.66 Aligned_cols=110 Identities=11% Similarity=0.164 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCC--------------CCChhhHHHHHHHH
Q 041427 34 NFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNY--------------ASSPWCLDELAKIV 99 (158)
Q Consensus 34 ~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~--------------~~S~wc~~El~~~~ 99 (158)
.-+..|...|.+.|+.+..-+.++...+ ..++.+..++...-|+|-+.-. ..-++-..++....
T Consensus 287 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~--r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~ 364 (417)
T 2i4i_A 287 KGADSLEDFLYHEGYACTSIHGDRSQRD--REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI 364 (417)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCHHH--HHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCeeEecCCCCHHH--HHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhc
Confidence 3567788888888887776544343221 2233444444444344433211 12345556666666
Q ss_pred HhhccCCCceeEEEEEecCCchh-hHHhhHHHhhhCHHHHHHHHHHHHH
Q 041427 100 ECGNKRNDRKVFAVFYGVDPTDR-VFAKYEEEFKENHEKVLKWRAALTR 147 (158)
Q Consensus 100 ~~~~~~~~~~iiPV~~~v~p~~v-~f~~~~~~~~~~~~~~~~W~~al~~ 147 (158)
.+..+.+..-..-+|+. +.+. ...+..+.+......+..|...+..
T Consensus 365 GR~gR~g~~g~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 411 (417)
T 2i4i_A 365 GRTGRVGNLGLATSFFN--ERNINITKDLLDLLVEAKQEVPSWLENMAY 411 (417)
T ss_dssp TTBCC--CCEEEEEEEC--GGGGGGHHHHHHHHHHTTCCCCHHHHHHHT
T ss_pred CccccCCCCceEEEEEc--cccHHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 66444444444444554 5555 2222222222222334556555443
No 68
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=23.03 E-value=1.6e+02 Score=20.09 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=18.7
Q ss_pred CCcc-ccHHHHHhhhhcceEEEEEecCC
Q 041427 59 RGNE-ISSELSKAIEESNVSIVILSKNY 85 (158)
Q Consensus 59 ~G~~-i~~~i~~~i~~s~~~IvvlS~~~ 85 (158)
+|.. +.......+..++.+|+|++..-
T Consensus 85 ~G~~~~~~~~~~~~~~~d~iilv~d~~~ 112 (199)
T 2p5s_A 85 AGQERFRSIAKSYFRKADGVLLLYDVTC 112 (199)
T ss_dssp TTCTTCHHHHHHHHHHCSEEEEEEETTC
T ss_pred CCCcchhhhHHHHHhhCCEEEEEEECCC
Confidence 5543 33444567889999999998653
No 69
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=22.98 E-value=52 Score=21.76 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHhhccc
Q 041427 134 NHEKVLKWRAALTRVASLA 152 (158)
Q Consensus 134 ~~~~~~~W~~al~~i~~~~ 152 (158)
..+..++|-+||..+++++
T Consensus 102 s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 102 SYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SHHHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHHhccC
Confidence 5788999999999998763
No 70
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=22.86 E-value=2.2e+02 Score=20.54 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=42.7
Q ss_pred ceeEEEecccCcC-chhHHHHHHHHHhcCCeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEecCCCCChhhHHHH
Q 041427 19 KYDVFLSFRGEDT-RNNFTDHLHVALIRNGFVAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDEL 95 (158)
Q Consensus 19 ~ydVFISys~~D~-~~~fv~~L~~~L~~~gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS~~~~~S~wc~~El 95 (158)
..=+||-|...+. ...++..+.++|++.|+.+-.=+ +.. .-.+++.+.|++++.+++ |. -+...++..|
T Consensus 28 ~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~--i~~--~~~~~~~~~l~~ad~I~l---~G-G~~~~l~~~L 97 (206)
T 3l4e_A 28 KTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELD--IAT--ESLGEITTKLRKNDFIYV---TG-GNTFFLLQEL 97 (206)
T ss_dssp CEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECC--TTT--SCHHHHHHHHHHSSEEEE---CC-SCHHHHHHHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEE--ecC--CChHHHHHHHHhCCEEEE---CC-CCHHHHHHHH
Confidence 3446999976521 24588999999999998765421 222 113455678889888665 33 3444454444
No 71
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=21.11 E-value=81 Score=25.93 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=32.2
Q ss_pred cCcCchhHHHHHHHHHhcCCeEEEecCCCCC----CCccccHHHHHhhhhcceEEE
Q 041427 28 GEDTRNNFTDHLHVALIRNGFVAFKDDETLD----RGNEISSELSKAIEESNVSIV 79 (158)
Q Consensus 28 ~~D~~~~fv~~L~~~L~~~gi~vf~d~~~l~----~G~~i~~~i~~~i~~s~~~Iv 79 (158)
..|.|++=+-.|.+.|..+|..|.+.+--.. .|..+.+.+.+++++++++|+
T Consensus 346 tdD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv~ 401 (432)
T 3pid_A 346 SDNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVIIS 401 (432)
T ss_dssp ------CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEEC
T ss_pred CcchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEEE
Confidence 3566777788999999999988766432222 233344577888999998653
No 72
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=21.03 E-value=2e+02 Score=19.50 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=19.2
Q ss_pred CCccc-cHHHHHhhhhcceEEEEEecCCC
Q 041427 59 RGNEI-SSELSKAIEESNVSIVILSKNYA 86 (158)
Q Consensus 59 ~G~~i-~~~i~~~i~~s~~~IvvlS~~~~ 86 (158)
+|..- .......++.++.+|+|++-.-.
T Consensus 83 ~G~~~~~~~~~~~~~~~d~iilV~D~~~~ 111 (192)
T 2il1_A 83 AGQERFNSITSAYYRSAKGIILVYDITKK 111 (192)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEETTCH
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcCH
Confidence 55443 33445678899999999996543
No 73
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.23 E-value=75 Score=20.07 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHhhcc
Q 041427 134 NHEKVLKWRAALTRVASL 151 (158)
Q Consensus 134 ~~~~~~~W~~al~~i~~~ 151 (158)
+.+...+|..||..++.+
T Consensus 104 s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 104 SPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 478899999999998865
No 74
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=20.20 E-value=1.7e+02 Score=19.16 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=18.9
Q ss_pred CCcc-ccHHHHHhhhhcceEEEEEecCC
Q 041427 59 RGNE-ISSELSKAIEESNVSIVILSKNY 85 (158)
Q Consensus 59 ~G~~-i~~~i~~~i~~s~~~IvvlS~~~ 85 (158)
+|.. +.......+..++.+|+|++..-
T Consensus 71 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 98 (179)
T 2y8e_A 71 AGQERFRSLIPSYIRDSTVAVVVYDITN 98 (179)
T ss_dssp CCSGGGGGGSHHHHHTCSEEEEEEETTC
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 5543 33444567889999999999753
No 75
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=20.15 E-value=70 Score=26.42 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=39.4
Q ss_pred ceeEEEecccCc-C-chhHHHHHHHHHhcC--------------CeEEEecCCCCCCCccccHHHHHhhhhcceEEEEEe
Q 041427 19 KYDVFLSFRGED-T-RNNFTDHLHVALIRN--------------GFVAFKDDETLDRGNEISSELSKAIEESNVSIVILS 82 (158)
Q Consensus 19 ~ydVFISys~~D-~-~~~fv~~L~~~L~~~--------------gi~vf~d~~~l~~G~~i~~~i~~~i~~s~~~IvvlS 82 (158)
.++|+|---+++ . ...++..|.+.|.+. |++|-+|.++-..|. .+.+|-..---+++|+.
T Consensus 345 P~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~~~~lg~----k~r~Ad~~g~p~~ivvG 420 (460)
T 3uh0_A 345 PYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRNEPVGY----RIKSAILKNYSYLIIVG 420 (460)
T ss_dssp SCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCCSSCHHH----HHHHHHHHTCSEEEEEC
T ss_pred CceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECCCCCHHH----HHHHHHHcCCCEEEEEc
Confidence 467876532322 1 246889999999988 999999987544444 45555443334555565
Q ss_pred cC
Q 041427 83 KN 84 (158)
Q Consensus 83 ~~ 84 (158)
++
T Consensus 421 ~~ 422 (460)
T 3uh0_A 421 DE 422 (460)
T ss_dssp HH
T ss_pred ch
Confidence 43
Done!