Query 041428
Match_columns 322
No_of_seqs 159 out of 1514
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:56:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 5.2E-66 1.1E-70 458.4 29.6 264 13-295 3-267 (280)
2 KOG1577 Aldo/keto reductase fa 100.0 4.9E-64 1.1E-68 445.8 30.5 282 15-296 6-289 (300)
3 PRK11172 dkgB 2,5-diketo-D-glu 100.0 6.6E-59 1.4E-63 420.1 31.5 255 22-296 1-256 (267)
4 COG0667 Tas Predicted oxidored 100.0 1.1E-56 2.3E-61 413.1 28.4 259 13-292 1-309 (316)
5 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2.8E-56 6E-61 404.4 30.1 262 14-296 5-266 (275)
6 KOG1575 Voltage-gated shaker-l 100.0 1.6E-56 3.5E-61 404.8 28.1 275 3-296 2-329 (336)
7 PRK09912 L-glyceraldehyde 3-ph 100.0 8.6E-55 1.9E-59 406.9 30.2 270 7-294 7-335 (346)
8 TIGR01293 Kv_beta voltage-depe 100.0 5.2E-55 1.1E-59 404.2 28.3 257 15-290 1-316 (317)
9 PRK10625 tas putative aldo-ket 100.0 4.4E-54 9.6E-59 402.5 29.1 274 13-292 1-339 (346)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 1.4E-52 3E-57 382.5 28.8 257 15-290 1-285 (285)
11 PRK10376 putative oxidoreducta 100.0 4.2E-52 9.1E-57 380.1 28.9 256 14-292 8-288 (290)
12 PLN02587 L-galactose dehydroge 100.0 4.4E-52 9.5E-57 384.2 27.7 262 15-292 1-300 (314)
13 PF00248 Aldo_ket_red: Aldo/ke 100.0 1E-51 2.3E-56 376.3 24.1 247 26-291 1-282 (283)
14 COG4989 Predicted oxidoreducta 100.0 1.6E-49 3.6E-54 338.9 19.8 262 13-292 1-293 (298)
15 PRK14863 bifunctional regulato 100.0 3.3E-49 7.1E-54 360.6 21.7 246 21-289 2-279 (292)
16 COG1453 Predicted oxidoreducta 100.0 3.3E-47 7.2E-52 341.7 20.7 274 13-307 1-304 (391)
17 KOG1576 Predicted oxidoreducta 100.0 3E-43 6.6E-48 302.6 21.2 266 12-294 21-324 (342)
18 KOG3023 Glutamate-cysteine lig 98.5 3.7E-07 8E-12 78.6 7.3 139 79-217 73-229 (285)
19 PF07021 MetW: Methionine bios 87.6 4.6 0.0001 34.5 8.6 74 146-219 90-170 (193)
20 TIGR00381 cdhD CO dehydrogenas 82.8 30 0.00064 32.9 12.3 127 97-245 128-270 (389)
21 PRK08609 hypothetical protein; 81.5 63 0.0014 32.6 16.4 183 38-246 350-553 (570)
22 COG1748 LYS9 Saccharopine dehy 81.1 9.9 0.00022 36.2 8.7 80 37-126 79-159 (389)
23 KOG0259 Tyrosine aminotransfer 80.8 38 0.00081 32.2 12.0 54 30-89 75-135 (447)
24 PRK10558 alpha-dehydro-beta-de 78.9 27 0.00059 31.3 10.5 101 151-277 10-115 (256)
25 cd03319 L-Ala-DL-Glu_epimerase 78.6 54 0.0012 30.1 15.4 150 35-218 134-289 (316)
26 PRK10128 2-keto-3-deoxy-L-rham 76.1 41 0.00089 30.4 10.8 101 151-277 9-114 (267)
27 cd03316 MR_like Mandelate race 75.9 69 0.0015 29.9 16.5 148 35-215 139-298 (357)
28 cd01973 Nitrogenase_VFe_beta_l 73.6 53 0.0012 32.1 11.7 115 58-184 66-191 (454)
29 PRK13796 GTPase YqeH; Provisio 73.1 71 0.0015 30.2 12.2 121 34-176 54-179 (365)
30 PF03102 NeuB: NeuB family; I 72.6 22 0.00047 31.6 8.0 117 34-173 53-185 (241)
31 cd01965 Nitrogenase_MoFe_beta_ 71.9 41 0.00088 32.5 10.5 109 59-184 62-185 (428)
32 TIGR03239 GarL 2-dehydro-3-deo 71.2 49 0.0011 29.5 10.1 99 153-277 5-108 (249)
33 TIGR02026 BchE magnesium-proto 70.2 61 0.0013 32.0 11.4 124 142-273 222-360 (497)
34 COG1140 NarY Nitrate reductase 70.0 3.3 7.2E-05 38.8 2.3 53 157-210 263-317 (513)
35 TIGR00216 ispH_lytB (E)-4-hydr 69.5 28 0.0006 31.7 8.1 115 150-272 146-273 (280)
36 PLN02489 homocysteine S-methyl 68.7 1E+02 0.0022 28.8 18.5 155 94-276 160-332 (335)
37 KOG0369 Pyruvate carboxylase [ 68.5 29 0.00063 35.4 8.4 146 37-221 43-197 (1176)
38 PRK12360 4-hydroxy-3-methylbut 67.9 34 0.00074 31.1 8.3 107 158-272 157-274 (281)
39 PRK07094 biotin synthase; Prov 66.9 92 0.002 28.6 11.4 121 142-274 70-203 (323)
40 PRK08392 hypothetical protein; 66.9 84 0.0018 27.1 18.5 183 38-246 15-209 (215)
41 cd07944 DRE_TIM_HOA_like 4-hyd 66.7 51 0.0011 29.6 9.3 108 93-214 16-128 (266)
42 PRK01045 ispH 4-hydroxy-3-meth 66.5 38 0.00083 31.1 8.4 107 158-272 156-275 (298)
43 COG2040 MHT1 Homocysteine/sele 65.1 1.1E+02 0.0024 27.9 14.7 214 36-276 42-297 (300)
44 PRK04452 acetyl-CoA decarbonyl 64.9 81 0.0017 29.3 10.3 117 105-245 83-205 (319)
45 COG0761 lytB 4-Hydroxy-3-methy 64.2 34 0.00073 31.1 7.4 119 146-272 144-277 (294)
46 COG0773 MurC UDP-N-acetylmuram 63.6 4.5 9.8E-05 39.2 1.9 60 197-261 79-141 (459)
47 PRK07945 hypothetical protein; 61.9 1.4E+02 0.003 27.9 17.2 180 37-245 111-318 (335)
48 TIGR01278 DPOR_BchB light-inde 61.1 1E+02 0.0022 30.7 11.0 142 60-218 67-243 (511)
49 PRK10550 tRNA-dihydrouridine s 60.7 1.4E+02 0.003 27.6 13.5 146 26-191 64-225 (312)
50 PRK00164 moaA molybdenum cofac 60.1 1.4E+02 0.0031 27.4 15.4 163 34-213 49-228 (331)
51 cd02801 DUS_like_FMN Dihydrour 60.0 1.1E+02 0.0025 26.3 11.0 135 34-191 64-214 (231)
52 TIGR02932 vnfK_nitrog V-contai 59.0 1.6E+02 0.0034 28.9 11.8 115 58-184 69-195 (457)
53 cd03174 DRE_TIM_metallolyase D 59.0 62 0.0013 28.6 8.4 103 94-215 16-135 (265)
54 TIGR00737 nifR3_yhdG putative 58.5 1.5E+02 0.0033 27.2 13.9 145 27-194 65-226 (319)
55 cd03315 MLE_like Muconate lact 58.2 1.4E+02 0.0029 26.6 15.8 151 36-219 86-242 (265)
56 PRK10415 tRNA-dihydrouridine s 57.0 1.6E+02 0.0035 27.2 12.9 140 32-194 72-228 (321)
57 TIGR00735 hisF imidazoleglycer 56.3 1.5E+02 0.0031 26.4 11.2 62 148-211 188-253 (254)
58 TIGR02311 HpaI 2,4-dihydroxyhe 55.7 1.5E+02 0.0032 26.3 10.2 100 151-277 3-108 (249)
59 cd01974 Nitrogenase_MoFe_beta 55.7 1.7E+02 0.0036 28.4 11.3 111 57-184 64-190 (435)
60 PRK05414 urocanate hydratase; 55.6 40 0.00088 33.1 6.8 149 9-191 94-267 (556)
61 TIGR01228 hutU urocanate hydra 55.5 39 0.00085 33.1 6.6 146 12-191 88-258 (545)
62 PF02401 LYTB: LytB protein; 55.2 26 0.00057 31.9 5.3 107 158-272 155-274 (281)
63 PF06506 PrpR_N: Propionate ca 54.8 42 0.00092 28.0 6.2 67 142-213 61-130 (176)
64 cd00423 Pterin_binding Pterin 54.5 1.6E+02 0.0034 26.2 10.3 108 94-217 21-129 (258)
65 PRK08195 4-hyroxy-2-oxovalerat 53.8 1.9E+02 0.0042 27.0 15.9 36 17-57 10-45 (337)
66 cd00308 enolase_like Enolase-s 53.5 1.3E+02 0.0028 26.0 9.4 70 148-219 134-207 (229)
67 COG2069 CdhD CO dehydrogenase/ 53.1 1.9E+02 0.0041 26.7 11.1 101 105-219 158-262 (403)
68 COG1751 Uncharacterized conser 51.9 1.4E+02 0.0029 24.7 9.4 101 145-255 13-123 (186)
69 TIGR01862 N2-ase-Ialpha nitrog 51.8 2.1E+02 0.0045 27.8 11.3 145 58-217 97-271 (443)
70 COG1099 Predicted metal-depend 51.5 1.7E+02 0.0037 25.8 9.2 98 145-247 45-161 (254)
71 COG1168 MalY Bifunctional PLP- 51.2 2.3E+02 0.0049 27.0 12.5 75 36-125 40-117 (388)
72 cd03322 rpsA The starvation se 50.7 2.2E+02 0.0047 26.7 15.1 145 35-217 126-274 (361)
73 TIGR03822 AblA_like_2 lysine-2 50.5 2.1E+02 0.0045 26.5 11.8 75 144-221 152-239 (321)
74 cd00739 DHPS DHPS subgroup of 50.1 1.9E+02 0.0041 25.9 10.6 106 95-216 22-128 (257)
75 PF14871 GHL6: Hypothetical gl 50.0 48 0.001 26.4 5.5 22 198-219 47-68 (132)
76 cd04740 DHOD_1B_like Dihydroor 49.6 2E+02 0.0043 26.0 15.3 161 34-209 99-286 (296)
77 TIGR02931 anfK_nitrog Fe-only 48.9 2.7E+02 0.0058 27.3 12.3 115 58-184 72-198 (461)
78 COG0635 HemN Coproporphyrinoge 48.3 1.6E+02 0.0034 28.5 9.7 74 92-170 199-276 (416)
79 PRK13561 putative diguanylate 48.0 76 0.0016 32.3 8.0 115 83-213 486-609 (651)
80 cd03318 MLE Muconate Lactonizi 47.8 77 0.0017 29.8 7.5 67 147-215 227-297 (365)
81 PRK05283 deoxyribose-phosphate 47.6 1.5E+02 0.0032 26.7 8.7 87 26-116 135-227 (257)
82 COG2200 Rtn c-di-GMP phosphodi 47.3 2E+02 0.0043 25.5 9.7 130 63-214 69-212 (256)
83 PRK02910 light-independent pro 47.1 2.7E+02 0.0059 27.7 11.5 160 60-243 67-262 (519)
84 PRK09613 thiH thiamine biosynt 46.3 1.2E+02 0.0026 29.9 8.6 108 94-218 115-242 (469)
85 COG2089 SpsE Sialic acid synth 46.1 2.5E+02 0.0055 26.2 12.2 121 34-178 87-224 (347)
86 TIGR01284 alt_nitrog_alph nitr 46.1 2.5E+02 0.0054 27.4 10.9 146 59-217 105-279 (457)
87 PF01175 Urocanase: Urocanase; 45.6 65 0.0014 31.8 6.5 127 41-191 106-257 (546)
88 cd01976 Nitrogenase_MoFe_alpha 45.4 2.9E+02 0.0063 26.6 15.2 168 58-242 78-271 (421)
89 cd02930 DCR_FMN 2,4-dienoyl-Co 44.9 2.7E+02 0.0058 26.1 14.1 91 80-182 202-300 (353)
90 COG4943 Predicted signal trans 44.9 89 0.0019 30.7 7.2 128 64-213 342-476 (524)
91 KOG1549 Cysteine desulfurase N 44.8 1.7E+02 0.0036 28.4 9.0 154 36-217 56-220 (428)
92 PRK15072 bifunctional D-altron 43.8 1.2E+02 0.0026 29.0 8.2 70 146-217 244-317 (404)
93 TIGR02534 mucon_cyclo muconate 43.8 88 0.0019 29.4 7.2 68 148-217 227-298 (368)
94 PRK00087 4-hydroxy-3-methylbut 43.6 1E+02 0.0022 31.7 8.0 113 152-272 148-271 (647)
95 PRK07534 methionine synthase I 43.5 2.8E+02 0.0061 25.9 20.7 216 32-276 39-294 (336)
96 TIGR03551 F420_cofH 7,8-dideme 43.4 1.8E+02 0.004 27.0 9.2 123 142-274 70-216 (343)
97 PRK00912 ribonuclease P protei 43.3 2.3E+02 0.0049 24.8 11.8 175 36-248 15-204 (237)
98 cd07943 DRE_TIM_HOA 4-hydroxy- 43.1 2.4E+02 0.0052 25.1 15.1 36 17-57 7-42 (263)
99 PRK10060 RNase II stability mo 42.6 1.5E+02 0.0033 30.3 9.3 114 82-214 492-617 (663)
100 TIGR01182 eda Entner-Doudoroff 42.5 1.2E+02 0.0026 26.2 7.1 61 146-213 45-106 (204)
101 TIGR00190 thiC thiamine biosyn 42.1 3.2E+02 0.007 26.3 14.9 102 35-172 75-187 (423)
102 TIGR01579 MiaB-like-C MiaB-lik 42.0 2.4E+02 0.0051 27.0 10.0 127 139-274 164-313 (414)
103 cd03325 D-galactonate_dehydrat 41.7 1.4E+02 0.003 27.9 8.2 68 146-215 214-285 (352)
104 TIGR00126 deoC deoxyribose-pho 41.2 2.1E+02 0.0045 24.8 8.5 79 29-114 124-205 (211)
105 PRK09058 coproporphyrinogen II 41.2 3.5E+02 0.0075 26.3 14.3 123 95-217 41-182 (449)
106 TIGR01496 DHPS dihydropteroate 41.2 2.6E+02 0.0057 24.9 11.0 101 94-216 20-126 (257)
107 CHL00076 chlB photochlorophyll 40.7 3.8E+02 0.0082 26.7 12.2 163 60-241 67-265 (513)
108 COG2949 SanA Uncharacterized m 40.6 1.5E+02 0.0032 25.9 7.1 51 145-195 79-136 (235)
109 PRK14017 galactonate dehydrata 39.5 1.5E+02 0.0032 28.2 8.0 68 148-217 217-288 (382)
110 PRK05692 hydroxymethylglutaryl 39.3 1.2E+02 0.0027 27.6 7.1 97 98-213 26-138 (287)
111 PF02679 ComA: (2R)-phospho-3- 39.3 92 0.002 27.7 6.1 78 36-122 83-168 (244)
112 TIGR03700 mena_SCO4494 putativ 39.3 3.3E+02 0.0071 25.5 12.4 137 94-271 79-222 (351)
113 cd07948 DRE_TIM_HCS Saccharomy 39.1 2.9E+02 0.0062 24.8 17.6 37 17-58 7-43 (262)
114 PF01487 DHquinase_I: Type I 3 38.9 2.5E+02 0.0055 24.1 10.7 122 32-176 70-191 (224)
115 TIGR00314 cdhA CO dehydrogenas 38.9 1.8E+02 0.0039 30.5 8.8 72 144-222 246-335 (784)
116 cd03323 D-glucarate_dehydratas 38.7 1.7E+02 0.0038 27.9 8.4 69 147-217 249-321 (395)
117 PRK07535 methyltetrahydrofolat 38.7 2.9E+02 0.0063 24.7 9.7 102 95-216 23-124 (261)
118 TIGR00676 fadh2 5,10-methylene 38.2 3E+02 0.0065 24.7 15.9 153 37-211 15-186 (272)
119 COG2987 HutU Urocanate hydrata 37.9 80 0.0017 30.7 5.7 60 105-187 202-261 (561)
120 cd00405 PRAI Phosphoribosylant 37.6 1.7E+02 0.0036 24.9 7.4 41 114-173 73-113 (203)
121 cd07945 DRE_TIM_CMS Leptospira 37.4 3.2E+02 0.0068 24.8 18.1 40 17-61 4-45 (280)
122 PRK06361 hypothetical protein; 37.1 2.6E+02 0.0057 23.7 14.4 183 37-251 10-201 (212)
123 PRK04390 rnpA ribonuclease P; 36.9 2E+02 0.0044 22.4 7.3 65 79-157 44-110 (120)
124 TIGR03471 HpnJ hopanoid biosyn 36.8 4.1E+02 0.0089 25.9 12.1 121 142-274 227-361 (472)
125 TIGR03821 AblA_like_1 lysine-2 36.7 2E+02 0.0043 26.6 8.2 74 146-221 160-245 (321)
126 PRK09413 IS2 repressor TnpA; R 36.5 66 0.0014 25.0 4.3 40 34-73 13-53 (121)
127 PRK06015 keto-hydroxyglutarate 36.0 1.6E+02 0.0036 25.3 7.0 61 146-213 41-102 (201)
128 cd00740 MeTr MeTr subgroup of 35.8 3.2E+02 0.0069 24.3 10.8 104 94-217 23-128 (252)
129 PRK13958 N-(5'-phosphoribosyl) 35.7 1.4E+02 0.003 25.8 6.6 67 106-191 16-83 (207)
130 PRK14461 ribosomal RNA large s 35.2 3E+02 0.0066 26.1 9.1 98 118-219 232-352 (371)
131 cd07943 DRE_TIM_HOA 4-hydroxy- 35.0 2.7E+02 0.0058 24.8 8.6 104 98-214 22-131 (263)
132 PRK09061 D-glutamate deacylase 34.6 4.7E+02 0.01 25.9 11.2 112 39-169 171-286 (509)
133 PF04748 Polysacc_deac_2: Dive 34.6 3E+02 0.0066 23.8 8.5 104 34-158 71-202 (213)
134 PLN02746 hydroxymethylglutaryl 34.5 4E+02 0.0086 25.1 16.8 38 17-59 53-90 (347)
135 PRK03031 rnpA ribonuclease P; 34.2 2.2E+02 0.0048 22.1 7.0 65 79-157 47-114 (122)
136 PRK06740 histidinol-phosphatas 34.1 3.8E+02 0.0082 24.9 9.7 23 37-59 61-83 (331)
137 PRK13602 putative ribosomal pr 34.1 81 0.0018 22.8 4.1 58 151-215 3-60 (82)
138 PRK08776 cystathionine gamma-s 34.0 3.8E+02 0.0083 25.6 10.0 73 146-219 111-186 (405)
139 COG1121 ZnuC ABC-type Mn/Zn tr 33.7 1.8E+02 0.004 26.0 7.1 51 113-177 156-206 (254)
140 COG1149 MinD superfamily P-loo 33.7 72 0.0016 28.9 4.5 50 168-219 201-250 (284)
141 COG1151 6Fe-6S prismane cluste 33.4 72 0.0016 31.9 4.8 94 143-243 391-491 (576)
142 TIGR03597 GTPase_YqeH ribosome 33.2 3.8E+02 0.0082 25.2 9.7 119 34-174 48-171 (360)
143 COG3623 SgaU Putative L-xylulo 32.5 76 0.0016 28.1 4.3 70 19-89 65-155 (287)
144 PRK00730 rnpA ribonuclease P; 32.4 2.5E+02 0.0053 22.7 7.0 63 79-157 46-110 (138)
145 PF00809 Pterin_bind: Pterin b 32.3 1.3E+02 0.0029 25.8 6.0 67 145-217 57-125 (210)
146 PF11242 DUF2774: Protein of u 32.2 61 0.0013 22.2 2.9 22 231-252 15-36 (63)
147 PF01118 Semialdhyde_dh: Semia 32.0 63 0.0014 24.9 3.5 28 34-61 74-101 (121)
148 COG4626 Phage terminase-like p 31.9 1.7E+02 0.0037 29.3 7.1 76 142-217 410-485 (546)
149 PRK13347 coproporphyrinogen II 31.8 4.9E+02 0.011 25.3 11.9 125 40-168 152-289 (453)
150 PRK05799 coproporphyrinogen II 31.7 4.4E+02 0.0095 24.7 13.0 73 144-216 36-117 (374)
151 PRK14332 (dimethylallyl)adenos 31.7 4.9E+02 0.011 25.3 10.9 126 139-274 180-326 (449)
152 PF13378 MR_MLE_C: Enolase C-t 31.6 90 0.002 23.5 4.3 51 166-219 3-56 (111)
153 cd01306 PhnM PhnM is believed 31.6 93 0.002 28.9 5.1 75 142-216 92-184 (325)
154 COG0646 MetH Methionine syntha 31.3 4.2E+02 0.0092 24.4 18.4 216 36-275 52-309 (311)
155 KOG0059 Lipid exporter ABCA1 a 30.4 2.5E+02 0.0054 30.1 8.7 75 93-181 669-769 (885)
156 PRK13361 molybdenum cofactor b 30.2 4.4E+02 0.0096 24.3 14.5 126 34-179 45-178 (329)
157 TIGR03569 NeuB_NnaB N-acetylne 30.1 4.6E+02 0.01 24.5 11.3 118 34-173 73-207 (329)
158 PF09012 FeoC: FeoC like trans 29.9 63 0.0014 22.3 2.9 27 142-168 26-52 (69)
159 TIGR00289 conserved hypothetic 29.8 2.3E+02 0.005 24.8 7.0 86 198-294 75-170 (222)
160 TIGR01928 menC_lowGC/arch o-su 29.3 4.5E+02 0.0098 24.1 15.6 150 35-219 132-285 (324)
161 PRK05588 histidinol-phosphatas 29.3 4E+02 0.0086 23.5 13.9 80 37-124 16-103 (255)
162 TIGR00689 rpiB_lacA_lacB sugar 29.2 3.1E+02 0.0068 22.2 9.5 98 93-215 6-105 (144)
163 TIGR00334 5S_RNA_mat_M5 ribonu 29.2 3.5E+02 0.0076 22.8 9.6 74 25-105 24-107 (174)
164 TIGR01860 VNFD nitrogenase van 29.0 5E+02 0.011 25.4 10.0 146 58-217 106-281 (461)
165 PF00155 Aminotran_1_2: Aminot 29.0 4.5E+02 0.0098 24.0 10.7 51 167-217 129-190 (363)
166 PF01081 Aldolase: KDPG and KH 28.9 1.9E+02 0.004 24.9 6.1 46 161-213 60-106 (196)
167 PRK05692 hydroxymethylglutaryl 28.9 4.4E+02 0.0096 23.9 17.0 36 17-57 11-46 (287)
168 TIGR00973 leuA_bact 2-isopropy 28.7 5.9E+02 0.013 25.2 14.2 37 17-58 8-44 (494)
169 smart00148 PLCXc Phospholipase 28.5 2.6E+02 0.0056 22.2 6.6 18 40-57 31-48 (135)
170 PF07287 DUF1446: Protein of u 28.5 1.2E+02 0.0027 28.6 5.4 89 146-242 10-100 (362)
171 COG4669 EscJ Type III secretor 28.5 2.7E+02 0.0058 24.7 7.0 78 34-111 28-122 (246)
172 PRK14457 ribosomal RNA large s 28.2 5E+02 0.011 24.3 14.6 149 62-219 163-330 (345)
173 COG0809 QueA S-adenosylmethion 28.0 52 0.0011 30.6 2.7 68 145-217 186-258 (348)
174 PRK14338 (dimethylallyl)adenos 28.0 5.7E+02 0.012 24.9 10.8 67 141-208 183-262 (459)
175 TIGR02370 pyl_corrinoid methyl 27.6 3.8E+02 0.0083 22.7 10.2 55 152-209 106-164 (197)
176 PRK14331 (dimethylallyl)adenos 27.5 5E+02 0.011 25.0 9.7 25 141-166 174-198 (437)
177 cd04743 NPD_PKS 2-Nitropropane 27.3 3.8E+02 0.0082 24.9 8.3 64 152-215 21-89 (320)
178 COG4152 ABC-type uncharacteriz 27.3 4.7E+02 0.01 23.7 8.8 81 93-179 101-199 (300)
179 PLN02321 2-isopropylmalate syn 27.3 7E+02 0.015 25.6 15.4 37 17-58 93-129 (632)
180 PF01207 Dus: Dihydrouridine s 27.2 2.8E+02 0.0061 25.4 7.5 142 26-190 55-213 (309)
181 TIGR02026 BchE magnesium-proto 27.2 6.1E+02 0.013 25.0 13.1 160 35-209 223-392 (497)
182 PRK01492 rnpA ribonuclease P; 27.1 3E+02 0.0065 21.4 7.0 62 80-155 47-114 (118)
183 COG0626 MetC Cystathionine bet 27.0 3.1E+02 0.0067 26.4 7.8 78 145-223 113-193 (396)
184 COG0621 MiaB 2-methylthioadeni 26.9 4.5E+02 0.0097 25.6 9.0 192 26-221 7-265 (437)
185 cd00959 DeoC 2-deoxyribose-5-p 26.8 2.7E+02 0.0059 23.7 6.9 77 29-112 123-202 (203)
186 PF03102 NeuB: NeuB family; I 26.6 1.7E+02 0.0038 25.9 5.7 66 198-275 59-135 (241)
187 PLN02775 Probable dihydrodipic 26.5 3.5E+02 0.0077 24.7 7.8 73 101-193 66-138 (286)
188 PRK06552 keto-hydroxyglutarate 26.5 3E+02 0.0064 23.9 7.1 61 146-213 50-114 (213)
189 COG1618 Predicted nucleotide k 26.3 3.9E+02 0.0085 22.4 7.5 78 63-169 87-165 (179)
190 PF00356 LacI: Bacterial regul 26.3 63 0.0014 20.6 2.2 42 232-277 2-43 (46)
191 PRK00915 2-isopropylmalate syn 26.3 6.6E+02 0.014 25.0 16.8 38 16-58 10-47 (513)
192 cd01977 Nitrogenase_VFe_alpha 26.2 4.7E+02 0.01 25.0 9.1 148 56-217 65-242 (415)
193 COG1751 Uncharacterized conser 26.1 2E+02 0.0043 23.8 5.3 69 38-113 15-85 (186)
194 COG0352 ThiE Thiamine monophos 26.0 2.9E+02 0.0062 24.0 6.8 60 151-217 97-167 (211)
195 PRK08208 coproporphyrinogen II 26.0 6E+02 0.013 24.5 10.8 123 144-274 73-216 (430)
196 TIGR02329 propionate_PrpR prop 25.9 3.2E+02 0.007 27.3 8.1 69 143-214 82-151 (526)
197 PRK10799 metal-binding protein 25.8 1E+02 0.0022 27.3 4.2 45 43-88 200-244 (247)
198 PRK00499 rnpA ribonuclease P; 25.7 3.1E+02 0.0067 21.0 6.8 64 79-157 38-104 (114)
199 PLN02389 biotin synthase 25.7 5.9E+02 0.013 24.2 11.4 105 34-159 116-227 (379)
200 cd03770 SR_TndX_transposase Se 25.7 1.4E+02 0.003 23.8 4.6 53 100-166 54-106 (140)
201 COG2159 Predicted metal-depend 25.6 5.1E+02 0.011 23.5 10.9 94 107-219 55-168 (293)
202 PF00682 HMGL-like: HMGL-like 25.5 4.4E+02 0.0095 22.7 9.9 144 97-280 13-180 (237)
203 TIGR02127 pyrF_sub2 orotidine 25.3 5E+02 0.011 23.3 13.5 156 97-273 37-206 (261)
204 smart00481 POLIIIAc DNA polyme 25.0 1.4E+02 0.003 20.1 4.0 21 198-218 18-38 (67)
205 PRK01222 N-(5'-phosphoribosyl) 24.9 2.5E+02 0.0054 24.2 6.3 66 107-191 19-85 (210)
206 COG2062 SixA Phosphohistidine 24.9 4E+02 0.0087 22.1 8.8 84 63-176 34-117 (163)
207 cd04724 Tryptophan_synthase_al 24.9 4.8E+02 0.01 22.9 9.7 71 145-217 62-139 (242)
208 COG0108 RibB 3,4-dihydroxy-2-b 24.8 1.9E+02 0.0041 25.0 5.3 16 198-213 175-190 (203)
209 PF00682 HMGL-like: HMGL-like 24.8 4.5E+02 0.0098 22.6 14.6 168 34-218 11-193 (237)
210 COG0042 tRNA-dihydrouridine sy 24.5 5.7E+02 0.012 23.7 13.0 139 32-191 74-229 (323)
211 TIGR02666 moaA molybdenum cofa 24.5 5.5E+02 0.012 23.5 14.3 128 34-180 43-178 (334)
212 TIGR00035 asp_race aspartate r 24.4 4E+02 0.0087 23.1 7.7 79 96-178 16-95 (229)
213 PRK11829 biofilm formation reg 24.2 4.1E+02 0.0089 26.9 8.8 115 83-213 491-614 (660)
214 PLN02540 methylenetetrahydrofo 24.2 7.6E+02 0.016 25.0 18.0 117 37-169 15-137 (565)
215 PRK13803 bifunctional phosphor 24.2 5.5E+02 0.012 26.2 9.5 68 108-192 20-88 (610)
216 cd01971 Nitrogenase_VnfN_like 24.1 6.5E+02 0.014 24.2 10.3 110 58-184 66-189 (427)
217 TIGR01163 rpe ribulose-phospha 23.9 4.2E+02 0.0091 22.2 7.6 64 147-212 44-108 (210)
218 PRK12323 DNA polymerase III su 23.8 3.5E+02 0.0077 28.0 7.9 68 95-179 105-174 (700)
219 cd07948 DRE_TIM_HCS Saccharomy 23.8 5.3E+02 0.011 23.0 9.2 93 99-215 23-132 (262)
220 cd01981 Pchlide_reductase_B Pc 23.8 6.5E+02 0.014 24.1 12.4 79 158-242 163-265 (430)
221 TIGR00238 KamA family protein. 23.7 4E+02 0.0086 24.8 7.9 87 146-237 177-275 (331)
222 TIGR01428 HAD_type_II 2-haloal 23.7 2.4E+02 0.0052 23.4 6.0 36 145-181 95-130 (198)
223 cd04742 NPD_FabD 2-Nitropropan 23.7 6.8E+02 0.015 24.3 13.7 33 150-190 154-186 (418)
224 cd08568 GDPD_TmGDE_like Glycer 23.6 4.7E+02 0.01 22.4 8.1 31 151-181 109-139 (226)
225 PF05049 IIGP: Interferon-indu 23.5 1.8E+02 0.0038 27.8 5.4 88 28-126 95-202 (376)
226 cd07944 DRE_TIM_HOA_like 4-hyd 23.5 5.4E+02 0.012 23.0 12.8 36 17-57 5-40 (266)
227 PF00388 PI-PLC-X: Phosphatidy 23.3 62 0.0014 25.9 2.2 17 40-56 29-45 (146)
228 PRK00396 rnpA ribonuclease P; 23.3 3.8E+02 0.0083 21.2 6.9 65 79-157 46-112 (130)
229 TIGR03586 PseI pseudaminic aci 23.0 6.2E+02 0.013 23.6 11.0 116 34-173 74-206 (327)
230 cd04734 OYE_like_3_FMN Old yel 22.9 6.2E+02 0.013 23.6 13.8 35 148-182 274-309 (343)
231 cd04742 NPD_FabD 2-Nitropropan 22.9 3.4E+02 0.0075 26.2 7.3 68 149-217 29-104 (418)
232 PLN02363 phosphoribosylanthran 22.9 3.2E+02 0.0069 24.5 6.7 74 95-191 56-130 (256)
233 PF13653 GDPD_2: Glycerophosph 22.8 97 0.0021 17.9 2.3 17 40-56 10-26 (30)
234 PRK08084 DNA replication initi 22.8 5.1E+02 0.011 22.5 8.0 48 115-173 98-145 (235)
235 PRK15440 L-rhamnonate dehydrat 22.8 3.6E+02 0.0079 25.7 7.6 67 146-214 246-318 (394)
236 TIGR02660 nifV_homocitr homoci 22.5 6.5E+02 0.014 23.6 11.0 111 100-238 25-150 (365)
237 KOG1579 Homocysteine S-methylt 22.5 6.3E+02 0.014 23.4 15.5 218 36-275 52-312 (317)
238 TIGR01378 thi_PPkinase thiamin 22.4 3.4E+02 0.0074 23.2 6.7 72 181-275 35-110 (203)
239 cd04731 HisF The cyclase subun 22.4 5.2E+02 0.011 22.4 11.5 131 22-181 70-216 (243)
240 PRK09454 ugpQ cytoplasmic glyc 22.4 5.3E+02 0.011 22.6 8.3 60 157-216 139-217 (249)
241 PRK06256 biotin synthase; Vali 22.4 6.1E+02 0.013 23.3 10.0 122 142-273 91-223 (336)
242 PF03599 CdhD: CO dehydrogenas 22.3 6.2E+02 0.013 24.2 8.8 84 114-218 69-154 (386)
243 PRK14340 (dimethylallyl)adenos 22.1 7.3E+02 0.016 24.1 10.5 26 139-165 175-200 (445)
244 cd00338 Ser_Recombinase Serine 22.1 1.9E+02 0.004 22.3 4.7 53 99-166 50-102 (137)
245 TIGR01502 B_methylAsp_ase meth 22.0 4.3E+02 0.0093 25.5 7.9 70 146-217 279-357 (408)
246 PRK09776 putative diguanylate 22.0 1.5E+02 0.0032 32.1 5.3 134 82-245 925-1070(1092)
247 PRK04820 rnpA ribonuclease P; 22.0 4.3E+02 0.0094 21.4 7.3 65 79-157 48-114 (145)
248 COG1880 CdhB CO dehydrogenase/ 21.9 4.7E+02 0.01 21.7 9.0 114 25-156 38-169 (170)
249 COG0135 TrpF Phosphoribosylant 21.9 1.4E+02 0.003 25.9 4.1 39 112-169 73-111 (208)
250 PRK02842 light-independent pro 21.8 7.2E+02 0.016 23.9 10.5 109 60-184 78-194 (427)
251 PRK13352 thiamine biosynthesis 21.8 7.4E+02 0.016 24.0 18.6 85 92-212 138-223 (431)
252 cd00945 Aldolase_Class_I Class 21.7 4.5E+02 0.0097 21.5 8.8 78 36-116 64-147 (201)
253 TIGR00262 trpA tryptophan synt 21.7 5.7E+02 0.012 22.7 10.9 97 113-217 36-150 (256)
254 KOG0693 Myo-inositol-1-phospha 21.7 5.2E+02 0.011 24.5 7.8 84 26-122 136-232 (512)
255 PF01527 HTH_Tnp_1: Transposas 21.6 30 0.00065 24.1 -0.1 40 34-73 7-47 (76)
256 PRK14336 (dimethylallyl)adenos 21.6 7.2E+02 0.016 23.8 10.0 125 140-273 151-298 (418)
257 KOG0173 20S proteasome, regula 21.6 61 0.0013 28.8 1.8 18 34-51 183-200 (271)
258 COG2055 Malate/L-lactate dehyd 21.5 6.4E+02 0.014 23.8 8.5 88 94-214 6-114 (349)
259 cd08319 Death_RAIDD Death doma 21.5 1.3E+02 0.0028 21.9 3.3 71 98-189 11-81 (83)
260 PRK07114 keto-hydroxyglutarate 21.5 3.2E+02 0.0069 23.9 6.3 45 162-213 72-117 (222)
261 cd01573 modD_like ModD; Quinol 21.4 3.8E+02 0.0083 24.2 7.0 62 148-214 171-236 (272)
262 PF11181 YflT: Heat induced st 21.3 1.6E+02 0.0034 22.2 3.9 30 60-89 6-35 (103)
263 COG2256 MGS1 ATPase related to 21.3 7E+02 0.015 24.2 8.8 103 41-170 37-143 (436)
264 PF01053 Cys_Met_Meta_PP: Cys/ 21.2 3.4E+02 0.0073 25.9 6.9 74 145-219 105-182 (386)
265 cd06543 GH18_PF-ChiA-like PF-C 21.2 6.4E+02 0.014 23.0 12.4 173 26-219 71-264 (294)
266 COG2102 Predicted ATPases of P 21.2 3.9E+02 0.0084 23.5 6.6 91 143-244 74-177 (223)
267 COG3215 PilZ Tfp pilus assembl 21.1 2E+02 0.0042 22.0 4.1 63 40-108 23-105 (117)
268 PLN00191 enolase 21.1 7.9E+02 0.017 24.1 10.2 68 146-215 323-395 (457)
269 COG2861 Uncharacterized protei 21.1 6E+02 0.013 22.7 11.8 128 116-263 78-215 (250)
270 COG1831 Predicted metal-depend 21.0 4.3E+02 0.0094 24.0 7.0 66 144-209 106-185 (285)
271 COG1801 Uncharacterized conser 21.0 6.1E+02 0.013 22.8 10.6 94 26-126 4-115 (263)
272 PRK01018 50S ribosomal protein 20.6 2.4E+02 0.0052 21.1 4.7 62 147-215 4-65 (99)
273 PRK05718 keto-hydroxyglutarate 20.5 4.3E+02 0.0093 22.9 6.9 61 146-213 52-113 (212)
274 PRK04165 acetyl-CoA decarbonyl 20.5 8.1E+02 0.018 24.0 12.3 101 94-216 102-209 (450)
275 PRK14459 ribosomal RNA large s 20.4 6E+02 0.013 24.2 8.4 99 117-219 241-359 (373)
276 PF04476 DUF556: Protein of un 20.3 6.1E+02 0.013 22.5 12.0 140 44-211 14-183 (235)
277 TIGR03849 arch_ComA phosphosul 20.2 5.9E+02 0.013 22.6 7.7 97 100-213 11-118 (237)
278 PRK09058 coproporphyrinogen II 20.2 8E+02 0.017 23.8 11.9 31 90-121 223-253 (449)
279 TIGR01060 eno phosphopyruvate 20.1 6.8E+02 0.015 24.2 8.9 65 147-213 291-362 (425)
280 TIGR01125 MiaB-like tRNA modif 20.1 7.8E+02 0.017 23.6 9.4 67 141-208 163-242 (430)
281 PRK07259 dihydroorotate dehydr 20.0 6.5E+02 0.014 22.7 13.8 162 34-209 101-289 (301)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=5.2e-66 Score=458.44 Aligned_cols=264 Identities=45% Similarity=0.831 Sum_probs=247.7
Q ss_pred cceEEcCCCCccCcceeecccCChhH-HHHHHHHHHHcCCCeEecCCCcCCHHHHHHHHHHHHhcCCCCCcEEEEecCCC
Q 041428 13 AESFKLLSGHTIPAVGLGTWKSGDEA-FKSVFTAIVEGGYRHIDTAKQYGVQENIGLALKEAMQTGIQRKDLFVTSKLWC 91 (322)
Q Consensus 13 m~~~~l~tg~~vs~lglG~~~~~~~~-~~~~l~~Al~~Gi~~~DTA~~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~ 91 (322)
+.+.+|++|.++|.||||||+.+..+ ..+++.+|++.|+|+||||..||||+.+|+++++. |++|+++||+||+|.
T Consensus 3 ~~~~~l~~g~~iP~iGlGt~~~~~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s---~v~ReelFittKvw~ 79 (280)
T COG0656 3 KTKVTLNNGVEIPAIGLGTWQIGDDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKES---GVPREELFITTKVWP 79 (280)
T ss_pred CceeecCCCCcccCcceEeeecCCchhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhc---CCCHHHeEEEeecCC
Confidence 56688899999999999999987766 89999999999999999999999999999999984 899999999999999
Q ss_pred CCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHH
Q 041428 92 ADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLK 171 (322)
Q Consensus 92 ~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~ 171 (322)
.+.+++.+.+++++||++||+||||||+||||.+. . ...+.++|++|++++++||||+||||||+.+
T Consensus 80 ~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~------------~~~~~etw~alE~l~~~G~ir~IGVSNF~~~ 146 (280)
T COG0656 80 SDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-K------------YVVIEETWKALEELVDEGLIRAIGVSNFGVE 146 (280)
T ss_pred ccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-c------------CccHHHHHHHHHHHHhcCCccEEEeeCCCHH
Confidence 99999999999999999999999999999999763 1 0226899999999999999999999999999
Q ss_pred HHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHHHHHHh
Q 041428 172 KLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQILLKWG 251 (322)
Q Consensus 172 ~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~qlal~~~ 251 (322)
+++++++..++.|.++|++||++.++.+++++|+++||.++|||||+. |. .++.++.+.++|++||.|++|++|+|.
T Consensus 147 ~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~-g~--~l~~~~~l~~Ia~k~g~t~AQv~L~W~ 223 (280)
T COG0656 147 HLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAK-GG--KLLDNPVLAEIAKKYGKTPAQVALRWH 223 (280)
T ss_pred HHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccc-cc--ccccChHHHHHHHHhCCCHHHHHHHHH
Confidence 999999998899999999999999999999999999999999999996 41 388899999999999999999999999
Q ss_pred hhcCCEEecCCCCHHHHHHhHhccCCCCCHHHHHHHHccccCCc
Q 041428 252 IHRGTSVIPKSTHPDRIKENIKAFGWEIPEHDFQTLCSMTDQKR 295 (322)
Q Consensus 252 l~~~~~~i~g~~~~~~l~~nl~a~~~~L~~ee~~~l~~~~~~~~ 295 (322)
+++|+++||.+++++|+.+|++++++.||+|||+.|+++.....
T Consensus 224 i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~ 267 (280)
T COG0656 224 IQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYG 267 (280)
T ss_pred HhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccC
Confidence 99999999999999999999999999999999999999988653
No 2
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=4.9e-64 Score=445.79 Aligned_cols=282 Identities=49% Similarity=0.883 Sum_probs=256.1
Q ss_pred eEEcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCeEecCCCcCCHHHHHHHHHHHHhcC-CCCCcEEEEecCCCCC
Q 041428 15 SFKLLSGHTIPAVGLGTWKSGDEAFKSVFTAIVEGGYRHIDTAKQYGVQENIGLALKEAMQTG-IQRKDLFVTSKLWCAD 93 (322)
Q Consensus 15 ~~~l~tg~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~lG~~l~~~~~~~-~~R~~~~i~tK~~~~~ 93 (322)
+.+|++|..+|.||||||+.++.++.+++..|++.|+||||||..||+|+.+|.+|++.+..+ ++|+++||+||+|...
T Consensus 6 ~~~Ln~G~~mP~iGlGTw~~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v~RediFiTSKlw~~~ 85 (300)
T KOG1577|consen 6 TVKLNNGFKMPIIGLGTWQSPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGVKREDIFITSKLWPTD 85 (300)
T ss_pred eEeccCCCccceeeeEecccChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCcchhhheeeeccCccc
Confidence 789999999999999999988899999999999999999999999999999999999998665 9999999999999998
Q ss_pred CChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCC-CCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHH
Q 041428 94 LSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPP-KDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKK 172 (322)
Q Consensus 94 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~ 172 (322)
..++.++.++++||++||+||+|||++|||-..++....+. .+......+..++|++|+++++.|++|+||||||+..+
T Consensus 86 ~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGVSNF~~~~ 165 (300)
T KOG1577|consen 86 HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGVSNFNIKQ 165 (300)
T ss_pred cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcCCceEeeeecCCHHH
Confidence 99999999999999999999999999999988643110000 01111224678999999999999999999999999999
Q ss_pred HHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHHHHHHhh
Q 041428 173 LNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQILLKWGI 252 (322)
Q Consensus 173 l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~qlal~~~l 252 (322)
++++++.+.++|.++|++++|+.++.+++++|+++||.|.||||||+++...+++.++.+.+||++||+|++|++|||.+
T Consensus 166 le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~~~~ll~~~~l~~iA~K~~kt~aQIlLrw~~ 245 (300)
T KOG1577|consen 166 LEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGRGSDLLEDPVLKEIAKKYNKTPAQILLRWAL 245 (300)
T ss_pred HHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCCccccccCHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998552124688999999999999999999999999
Q ss_pred hcCCEEecCCCCHHHHHHhHhccCCCCCHHHHHHHHccccCCcc
Q 041428 253 HRGTSVIPKSTHPDRIKENIKAFGWEIPEHDFQTLCSMTDQKRL 296 (322)
Q Consensus 253 ~~~~~~i~g~~~~~~l~~nl~a~~~~L~~ee~~~l~~~~~~~~~ 296 (322)
++|++|||.++|++|+.||+++++|.||+||++.|+....+.|.
T Consensus 246 q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 246 QRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNERY 289 (300)
T ss_pred hCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhcccccee
Confidence 99999999999999999999999999999999999998887653
No 3
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=6.6e-59 Score=420.14 Aligned_cols=255 Identities=35% Similarity=0.656 Sum_probs=233.5
Q ss_pred CccCcceeecccCChhHHHHHHHHHHHcCCCeEecCCCcCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHH
Q 041428 22 HTIPAVGLGTWKSGDEAFKSVFTAIVEGGYRHIDTAKQYGVQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRS 101 (322)
Q Consensus 22 ~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~ 101 (322)
.+||+||||||+.+.+++.+++++|++.|||+||||+.||+|+.+|++|+.. +.+|+++||+||++....+++.+++
T Consensus 1 ~~vs~lglGt~~~~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~~R~~v~i~TK~~~~~~~~~~~~~ 77 (267)
T PRK11172 1 MSIPAFGLGTFRLKDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---GVPRDELFITTKIWIDNLAKDKLIP 77 (267)
T ss_pred CCCCCEeeEccccChHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---CCChhHeEEEEEeCCCCCCHHHHHH
Confidence 3689999999998888899999999999999999999999999999999864 5679999999999776778999999
Q ss_pred HHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhhcC
Q 041428 102 ALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAK 181 (322)
Q Consensus 102 ~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~ 181 (322)
++++||+|||+||||+|++|+|++... .+..++|++|++|+++||||+||||||+.++++++++...
T Consensus 78 ~~~~SL~rL~~d~iDl~~lH~~~~~~~-------------~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~ 144 (267)
T PRK11172 78 SLKESLQKLRTDYVDLTLIHWPSPNDE-------------VSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVG 144 (267)
T ss_pred HHHHHHHHhCCCceEEEEeCCCCCCCC-------------CCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcC
Confidence 999999999999999999999875311 4568999999999999999999999999999999988765
Q ss_pred C-CCceeceeeCCCCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhcCCEEec
Q 041428 182 T-KPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQILLKWGIHRGTSVIP 260 (322)
Q Consensus 182 ~-~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~~~i~ 260 (322)
. +++++|++||++.+..+++++|+++||+|++|+||++ | .++..+.+.++|+++|+|++|+||+|+++++.++||
T Consensus 145 ~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~-G---~~~~~~~l~~~a~~~~~s~aqval~w~l~~~~~~i~ 220 (267)
T PRK11172 145 AENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAY-G---KVLKDPVIARIAAKHNATPAQVILAWAMQLGYSVIP 220 (267)
T ss_pred CCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCC-C---cccCCHHHHHHHHHhCCCHHHHHHHHHHhCCCEeec
Confidence 4 6799999999999989999999999999999999997 7 345668899999999999999999999999989999
Q ss_pred CCCCHHHHHHhHhccCCCCCHHHHHHHHccccCCcc
Q 041428 261 KSTHPDRIKENIKAFGWEIPEHDFQTLCSMTDQKRL 296 (322)
Q Consensus 261 g~~~~~~l~~nl~a~~~~L~~ee~~~l~~~~~~~~~ 296 (322)
|+++++|+++|+++++++||+++++.|+++..+.+.
T Consensus 221 g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~~~ 256 (267)
T PRK11172 221 SSTKRENLASNLLAQDLQLDAEDMAAIAALDRNGRL 256 (267)
T ss_pred CCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccCCcc
Confidence 999999999999999999999999999999875443
No 4
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.1e-56 Score=413.06 Aligned_cols=259 Identities=30% Similarity=0.511 Sum_probs=231.1
Q ss_pred cceEEc-CCCCccCcceeecccCC-------hhHHHHHHHHHHHcCCCeEecCCCcC---CHHHHHHHHHHHHhcCCCCC
Q 041428 13 AESFKL-LSGHTIPAVGLGTWKSG-------DEAFKSVFTAIVEGGYRHIDTAKQYG---VQENIGLALKEAMQTGIQRK 81 (322)
Q Consensus 13 m~~~~l-~tg~~vs~lglG~~~~~-------~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~e~~lG~~l~~~~~~~~~R~ 81 (322)
|.+++| ++|+.||+||||||.+. .+++.++|++|+|+|||+||||+.|| ||+++|++|+.. +. |+
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~~-Rd 76 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---GR-RD 76 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---CC-CC
Confidence 788999 78999999999999743 22556699999999999999999999 899999999975 32 89
Q ss_pred cEEEEecCCC----------CCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHH
Q 041428 82 DLFVTSKLWC----------ADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREM 151 (322)
Q Consensus 82 ~~~i~tK~~~----------~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L 151 (322)
+++|+||++. .+.++++|+++++.||+||||||||+|++|+|++. ++..+++.+|
T Consensus 77 ~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~---------------~p~~e~~~aL 141 (316)
T COG0667 77 KVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPE---------------TPIEETLEAL 141 (316)
T ss_pred eEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCC---------------CCHHHHHHHH
Confidence 9999999942 34589999999999999999999999999999884 6789999999
Q ss_pred HHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCc--HHHHHHHHHcCceEEEeccCCCCCCCCCC-C-
Q 041428 152 EKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRN--DKILEACKKNGIHVTAYSPLGSQGAGRDL-I- 227 (322)
Q Consensus 152 ~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~via~~pl~~~G~l~~~-~- 227 (322)
.+|+++||||+||+||++++++.++++.. .+++++|.+||++.++ .+++++|+++||++++|+||++ |+|..- .
T Consensus 142 ~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~-G~Ltgk~~~ 219 (316)
T COG0667 142 DELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLAS-GLLTGKYLP 219 (316)
T ss_pred HHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccc-cccCCCcCC
Confidence 99999999999999999999999999986 5679999999999976 4599999999999999999998 877211 1
Q ss_pred -------------C----------CHHHHHHHHhcCCCHHHHHHHHhhhcC--CEEecCCCCHHHHHHhHhccCCCCCHH
Q 041428 228 -------------H----------DPTVERIAKKLNKSPGQILLKWGIHRG--TSVIPKSTHPDRIKENIKAFGWEIPEH 282 (322)
Q Consensus 228 -------------~----------~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~~L~~e 282 (322)
. ...++++|+++|+|++|+||+|++++| +++|+|+++++||++|+++++..|+++
T Consensus 220 ~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~ 299 (316)
T COG0667 220 GPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEE 299 (316)
T ss_pred CcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHH
Confidence 0 124888999999999999999999997 799999999999999999999999999
Q ss_pred HHHHHHcccc
Q 041428 283 DFQTLCSMTD 292 (322)
Q Consensus 283 e~~~l~~~~~ 292 (322)
+++.|++...
T Consensus 300 ~~~~l~~~~~ 309 (316)
T COG0667 300 ELAALDEISA 309 (316)
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 5
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=2.8e-56 Score=404.42 Aligned_cols=262 Identities=36% Similarity=0.721 Sum_probs=237.6
Q ss_pred ceEEcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCeEecCCCcCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041428 14 ESFKLLSGHTIPAVGLGTWKSGDEAFKSVFTAIVEGGYRHIDTAKQYGVQENIGLALKEAMQTGIQRKDLFVTSKLWCAD 93 (322)
Q Consensus 14 ~~~~l~tg~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~ 93 (322)
++++|++|..+|+||||||+.+.+++.++|++|++.|+|+||||+.||+|+.+|++|+.. +++|++++|+||++.
T Consensus 5 ~~~~l~~g~~v~~lglG~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~~R~~~~i~tK~~~-- 79 (275)
T PRK11565 5 TVIKLQDGNVMPQLGLGVWQASNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---SVAREELFITTKLWN-- 79 (275)
T ss_pred ceEEcCCCCccCCcceECccCCHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---CCCHHHEEEEEEecC--
Confidence 346678999999999999998889999999999999999999999999999999999864 567999999999964
Q ss_pred CChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 041428 94 LSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKL 173 (322)
Q Consensus 94 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l 173 (322)
.+++.+++++++||++||+||||+|++|+|++.. ....++|++|++|+++||||+||||||+++++
T Consensus 80 ~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~--------------~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 145 (275)
T PRK11565 80 DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAI--------------DHYVEAWKGMIELQKEGLIKSIGVCNFQIHHL 145 (275)
T ss_pred cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCc--------------CcHHHHHHHHHHHHHcCCeeEEeeccCCHHHH
Confidence 3578999999999999999999999999997531 13579999999999999999999999999999
Q ss_pred HHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhh
Q 041428 174 NKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQILLKWGIH 253 (322)
Q Consensus 174 ~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~qlal~~~l~ 253 (322)
++++....++|.++|++|+++.+..+++++|+++||.+++|+||++ |. ...+..+.+.++|+++|+|++|+||||+++
T Consensus 146 ~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~-G~-~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~ 223 (275)
T PRK11565 146 QRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQ-GG-KGVFDQKVIRDLADKYGKTPAQIVIRWHLD 223 (275)
T ss_pred HHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCC-CC-cccccCHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 9998877778899999999999888999999999999999999986 52 124557899999999999999999999999
Q ss_pred cCCEEecCCCCHHHHHHhHhccCCCCCHHHHHHHHccccCCcc
Q 041428 254 RGTSVIPKSTHPDRIKENIKAFGWEIPEHDFQTLCSMTDQKRL 296 (322)
Q Consensus 254 ~~~~~i~g~~~~~~l~~nl~a~~~~L~~ee~~~l~~~~~~~~~ 296 (322)
++.++|||+++++|+++|+++++++|+++++++|+++..+.+.
T Consensus 224 ~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~~ 266 (275)
T PRK11565 224 SGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKRL 266 (275)
T ss_pred CCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccCCc
Confidence 9988999999999999999999999999999999999765443
No 6
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1.6e-56 Score=404.82 Aligned_cols=275 Identities=25% Similarity=0.378 Sum_probs=247.4
Q ss_pred CCCCCCCCCCcceEEc-CCCCccCcceeeccc-------CChhHHHHHHHHHHHcCCCeEecCCCcC---CHHHHHHHHH
Q 041428 3 QSNIEPTNHKAESFKL-LSGHTIPAVGLGTWK-------SGDEAFKSVFTAIVEGGYRHIDTAKQYG---VQENIGLALK 71 (322)
Q Consensus 3 ~~~~~~~~~~m~~~~l-~tg~~vs~lglG~~~-------~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~e~~lG~~l~ 71 (322)
.+...+....|+|++| ++|++||++|||+|. .+++++.++|++|+|+|+|+||||++|| ||.++|++|+
T Consensus 2 ~~~~~~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~ 81 (336)
T KOG1575|consen 2 PAPEPSTELGMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIK 81 (336)
T ss_pred CcccccchhcceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHH
Confidence 4556677779999999 788999999999932 4789999999999999999999999999 7999999999
Q ss_pred HHHhcCCCCCcEEEEecCCC-------CCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccH
Q 041428 72 EAMQTGIQRKDLFVTSKLWC-------ADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDM 144 (322)
Q Consensus 72 ~~~~~~~~R~~~~i~tK~~~-------~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~ 144 (322)
+. +.+|++++|+||++. ...+...+...++.|+++|+++|||+||+||+|+. .++
T Consensus 82 ~~---~~~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~---------------~pi 143 (336)
T KOG1575|consen 82 SR---GWRRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPM---------------VPI 143 (336)
T ss_pred hc---CCcCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCC---------------CCH
Confidence 87 678999999999942 34567889999999999999999999999999885 779
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCc---HHHHHHHHHcCceEEEeccCCCCC
Q 041428 145 EGVWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRN---DKILEACKKNGIHVTAYSPLGSQG 221 (322)
Q Consensus 145 ~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~via~~pl~~~G 221 (322)
++++++|.+++++||||+||+|+++++++.+++..+.+++.++|++||++.+. .+++++|+++||++++||||++ |
T Consensus 144 ee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~-G 222 (336)
T KOG1575|consen 144 EETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGR-G 222 (336)
T ss_pred HHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEeccccc-c
Confidence 99999999999999999999999999999999999988899999999999997 5699999999999999999998 9
Q ss_pred CCCCC----------------CC--------------CHHHHHHHHhcCCCHHHHHHHHhhhcC--CEEecCCCCHHHHH
Q 041428 222 AGRDL----------------IH--------------DPTVERIAKKLNKSPGQILLKWGIHRG--TSVIPKSTHPDRIK 269 (322)
Q Consensus 222 ~l~~~----------------~~--------------~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~ 269 (322)
+|..- .. .+.+.++|+++|+|++|+||+|+++++ ++||||+++++|++
T Consensus 223 ~Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~ 302 (336)
T KOG1575|consen 223 LLTGKYKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLK 302 (336)
T ss_pred eeccCcccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHH
Confidence 88100 00 134789999999999999999999998 89999999999999
Q ss_pred HhHhccCCCCCHHHHHHHHccccCCcc
Q 041428 270 ENIKAFGWEIPEHDFQTLCSMTDQKRL 296 (322)
Q Consensus 270 ~nl~a~~~~L~~ee~~~l~~~~~~~~~ 296 (322)
||++|+...|+++++..|+...+....
T Consensus 303 eni~Al~~~Lt~e~~~~l~~~~~~~~~ 329 (336)
T KOG1575|consen 303 ENIGALSVKLTPEEIKELEEIIDKILG 329 (336)
T ss_pred HHHhhhhccCCHHHHHHHHHhhccccC
Confidence 999999999999999999999885444
No 7
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=8.6e-55 Score=406.91 Aligned_cols=270 Identities=21% Similarity=0.346 Sum_probs=232.7
Q ss_pred CCCCCCcceEEc-CCCCccCcceeeccc-C----ChhHHHHHHHHHHHcCCCeEecCCCcC-----CHHHHHHHHHHHHh
Q 041428 7 EPTNHKAESFKL-LSGHTIPAVGLGTWK-S----GDEAFKSVFTAIVEGGYRHIDTAKQYG-----VQENIGLALKEAMQ 75 (322)
Q Consensus 7 ~~~~~~m~~~~l-~tg~~vs~lglG~~~-~----~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-----~e~~lG~~l~~~~~ 75 (322)
+++...|++++| +||++||+||||||+ . +.+++.++|++|+++|||+||||+.|| +|+.+|++|++..
T Consensus 7 ~~~~~~m~~r~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~- 85 (346)
T PRK09912 7 PERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF- 85 (346)
T ss_pred CCCCCCcceeecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc-
Confidence 344467999999 899999999999996 2 456778999999999999999999998 6999999998531
Q ss_pred cCCCCCcEEEEecCCC--------CCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHH
Q 041428 76 TGIQRKDLFVTSKLWC--------ADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGV 147 (322)
Q Consensus 76 ~~~~R~~~~i~tK~~~--------~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 147 (322)
+..|++++|+||++. ...+++.+++++++||++||+||||+|++|+|++. .+.+++
T Consensus 86 -~~~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~---------------~~~~e~ 149 (346)
T PRK09912 86 -AAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDEN---------------TPMEET 149 (346)
T ss_pred -cCCCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCC---------------CCHHHH
Confidence 125999999999742 13568899999999999999999999999999753 457899
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHHhh---cCCCCceeceeeCCCCCc---HHHHHHHHHcCceEEEeccCCCCC
Q 041428 148 WREMEKLVKDGLVRDVGVCNFTLKKLNKLLNF---AKTKPSVCQMEMHPGWRN---DKILEACKKNGIHVTAYSPLGSQG 221 (322)
Q Consensus 148 ~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~---~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~via~~pl~~~G 221 (322)
|++|++|+++||||+||||||++++++++.+. ..+++.++|++||++++. .+++++|+++||++++|+||++ |
T Consensus 150 ~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~-G 228 (346)
T PRK09912 150 ASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQ-G 228 (346)
T ss_pred HHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcC-c
Confidence 99999999999999999999999988866553 345778999999999975 4699999999999999999998 8
Q ss_pred CCCCCC-------------------------C------CHHHHHHHHhcCCCHHHHHHHHhhhcC--CEEecCCCCHHHH
Q 041428 222 AGRDLI-------------------------H------DPTVERIAKKLNKSPGQILLKWGIHRG--TSVIPKSTHPDRI 268 (322)
Q Consensus 222 ~l~~~~-------------------------~------~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l 268 (322)
+|...+ . .+.+.++|+++|+|++|+||+|++++| .++|||+++++|+
T Consensus 229 ~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql 308 (346)
T PRK09912 229 LLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQL 308 (346)
T ss_pred cccCCCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHH
Confidence 762110 0 146778999999999999999999998 7789999999999
Q ss_pred HHhHhccC-CCCCHHHHHHHHccccCC
Q 041428 269 KENIKAFG-WEIPEHDFQTLCSMTDQK 294 (322)
Q Consensus 269 ~~nl~a~~-~~L~~ee~~~l~~~~~~~ 294 (322)
++|++++. ++|++++++.|+++.++.
T Consensus 309 ~en~~a~~~~~L~~e~~~~l~~~~~~~ 335 (346)
T PRK09912 309 EENVQALNNLTFSTEELAQIDQHIADG 335 (346)
T ss_pred HHHHhhhcCCCCCHHHHHHHHHhhCcc
Confidence 99999984 799999999999987653
No 8
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=5.2e-55 Score=404.16 Aligned_cols=257 Identities=25% Similarity=0.385 Sum_probs=225.0
Q ss_pred eEEc-CCCCccCcceeeccc-----CChhHHHHHHHHHHHcCCCeEecCCCcC---CHHHHHHHHHHHHhcCCCCCcEEE
Q 041428 15 SFKL-LSGHTIPAVGLGTWK-----SGDEAFKSVFTAIVEGGYRHIDTAKQYG---VQENIGLALKEAMQTGIQRKDLFV 85 (322)
Q Consensus 15 ~~~l-~tg~~vs~lglG~~~-----~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~e~~lG~~l~~~~~~~~~R~~~~i 85 (322)
|++| ++|++||+||||||+ .+.+++.++|+.|+++|||+||||+.|| ||+++|++|+.. +.+|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---GWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---CCCcccEEE
Confidence 4677 789999999999986 4678899999999999999999999998 899999999853 456999999
Q ss_pred EecCCC-------CCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcC
Q 041428 86 TSKLWC-------ADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDG 158 (322)
Q Consensus 86 ~tK~~~-------~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G 158 (322)
+||++. .+.+++.+++++++||++||+||||+|++|||++. .+.+++|++|++|+++|
T Consensus 78 aTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~---------------~~~~e~~~aL~~l~~~G 142 (317)
T TIGR01293 78 TTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPN---------------TPMEETVRAMTYVINQG 142 (317)
T ss_pred EeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCC---------------CCHHHHHHHHHHHHHcC
Confidence 999732 23578999999999999999999999999999763 45789999999999999
Q ss_pred CccEEEecCCCHHHHHHHHhhcC----CCCceeceeeCCCCCc---HHHHHHHHHcCceEEEeccCCCCCCCCCCC----
Q 041428 159 LVRDVGVCNFTLKKLNKLLNFAK----TKPSVCQMEMHPGWRN---DKILEACKKNGIHVTAYSPLGSQGAGRDLI---- 227 (322)
Q Consensus 159 kir~iGvs~~~~~~l~~~~~~~~----~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~via~~pl~~~G~l~~~~---- 227 (322)
|||+||||||+.+++.++...+. ++++++|++||++.++ .+++++|+++||++++|+||++ |+|..-+
T Consensus 143 ~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~-G~Ltg~~~~~~ 221 (317)
T TIGR01293 143 MAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLAC-GLVSGKYDSGI 221 (317)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccc-cccCCCCCCCC
Confidence 99999999999999887765432 5678999999999886 3699999999999999999998 8762100
Q ss_pred --------------C--------------CHHHHHHHHhcCCCHHHHHHHHhhhcC--CEEecCCCCHHHHHHhHhccCC
Q 041428 228 --------------H--------------DPTVERIAKKLNKSPGQILLKWGIHRG--TSVIPKSTHPDRIKENIKAFGW 277 (322)
Q Consensus 228 --------------~--------------~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~ 277 (322)
. .+.++++|+++|+|++|+||+|++++| +++|||+++++|+++|+++++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~ 301 (317)
T TIGR01293 222 PPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQV 301 (317)
T ss_pred CCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhc
Confidence 0 135788999999999999999999997 5789999999999999999987
Q ss_pred --CCCHHHHHHHHcc
Q 041428 278 --EIPEHDFQTLCSM 290 (322)
Q Consensus 278 --~L~~ee~~~l~~~ 290 (322)
+||+++++.|+++
T Consensus 302 ~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 302 LPKLSSSIIHEIDSI 316 (317)
T ss_pred cCCCCHHHHHHHHhh
Confidence 9999999999875
No 9
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=4.4e-54 Score=402.51 Aligned_cols=274 Identities=24% Similarity=0.342 Sum_probs=229.7
Q ss_pred cceEEc-CCCCccCcceeecccC----ChhHHHHHHHHHHHcCCCeEecCCCcC----------CHHHHHHHHHHHHhcC
Q 041428 13 AESFKL-LSGHTIPAVGLGTWKS----GDEAFKSVFTAIVEGGYRHIDTAKQYG----------VQENIGLALKEAMQTG 77 (322)
Q Consensus 13 m~~~~l-~tg~~vs~lglG~~~~----~~~~~~~~l~~Al~~Gi~~~DTA~~Yg----------~e~~lG~~l~~~~~~~ 77 (322)
|+|++| +||+++|+||||||+. +.+++.++|+.|++.|||+||||+.|| +|..+|++|+.. +
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~---~ 77 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR---G 77 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc---C
Confidence 788999 8999999999999974 567899999999999999999999996 899999999853 3
Q ss_pred CCCCcEEEEecCCCC------------CCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCC--CCCCCCCC-Cccccc
Q 041428 78 IQRKDLFVTSKLWCA------------DLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKE--GASRPPKD-GEVLEF 142 (322)
Q Consensus 78 ~~R~~~~i~tK~~~~------------~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~--~~~~~~~~-~~~~~~ 142 (322)
.|++++|+||++.. +.+++.+++++++||++||+||||+|++|||++... +.. .... ......
T Consensus 78 -~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~-~~~~~~~~~~~ 155 (346)
T PRK10625 78 -SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKL-GYSWTDSAPAV 155 (346)
T ss_pred -CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCccccccccc-ccccccccCCC
Confidence 59999999998421 357899999999999999999999999999975311 000 0000 000124
Q ss_pred cHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhhc---C-CCCceeceeeCCCCCc--HHHHHHHHHcCceEEEecc
Q 041428 143 DMEGVWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFA---K-TKPSVCQMEMHPGWRN--DKILEACKKNGIHVTAYSP 216 (322)
Q Consensus 143 ~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~---~-~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~via~~p 216 (322)
++.++|++|++|+++||||+||+|||+.+++.+++..+ . ..+.++|++||++++. .+++++|+++||++++|+|
T Consensus 156 ~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~sp 235 (346)
T PRK10625 156 SLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSC 235 (346)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEecc
Confidence 57899999999999999999999999999888776532 2 3467899999999876 5799999999999999999
Q ss_pred CCCCCCCCC--------------CCC-------------CHHHHHHHHhcCCCHHHHHHHHhhhcC--CEEecCCCCHHH
Q 041428 217 LGSQGAGRD--------------LIH-------------DPTVERIAKKLNKSPGQILLKWGIHRG--TSVIPKSTHPDR 267 (322)
Q Consensus 217 l~~~G~l~~--------------~~~-------------~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~ 267 (322)
|++ |+|.. .+. .+.++++|+++|+|++|+||+|++++| +++|||+++++|
T Consensus 236 L~~-G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~ 314 (346)
T PRK10625 236 LAF-GTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQ 314 (346)
T ss_pred ccC-eeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHH
Confidence 997 87621 011 146788999999999999999999998 468999999999
Q ss_pred HHHhHhccCCCCCHHHHHHHHcccc
Q 041428 268 IKENIKAFGWEIPEHDFQTLCSMTD 292 (322)
Q Consensus 268 l~~nl~a~~~~L~~ee~~~l~~~~~ 292 (322)
+++|+++++++|++++++.|+++..
T Consensus 315 l~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 315 LKTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999864
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.4e-52 Score=382.47 Aligned_cols=257 Identities=37% Similarity=0.647 Sum_probs=230.3
Q ss_pred eEEc-CCCCccCcceeecccC-----ChhHHHHHHHHHHHcCCCeEecCCCcC---CHHHHHHHHHHHHhcCCCCCcEEE
Q 041428 15 SFKL-LSGHTIPAVGLGTWKS-----GDEAFKSVFTAIVEGGYRHIDTAKQYG---VQENIGLALKEAMQTGIQRKDLFV 85 (322)
Q Consensus 15 ~~~l-~tg~~vs~lglG~~~~-----~~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~e~~lG~~l~~~~~~~~~R~~~~i 85 (322)
+++| +||..||+||||||.. +.+++.++++.|++.|||+||||+.|| +|+.+|++|+.. + .|++++|
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~-~R~~~~i 76 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G-PREEVFI 76 (285)
T ss_pred CcccCCCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C-CcCcEEE
Confidence 4677 5999999999999875 458899999999999999999999999 899999999965 2 4999999
Q ss_pred EecCCCCC-----CChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCc
Q 041428 86 TSKLWCAD-----LSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLV 160 (322)
Q Consensus 86 ~tK~~~~~-----~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gki 160 (322)
+||++... .+++.+++++++||++||++|||+|+||+|+... ....++|++|++++++|||
T Consensus 77 ~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~--------------~~~~~~~~~l~~l~~~G~i 142 (285)
T cd06660 77 ATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDT--------------PDIEETLRALEELVKEGKI 142 (285)
T ss_pred EeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCC--------------CCHHHHHHHHHHHHHcCCc
Confidence 99997553 5899999999999999999999999999997641 1368999999999999999
Q ss_pred cEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCcH--HHHHHHHHcCceEEEeccCCCCCCCCCC-CC---------
Q 041428 161 RDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRND--KILEACKKNGIHVTAYSPLGSQGAGRDL-IH--------- 228 (322)
Q Consensus 161 r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~--~ll~~~~~~gi~via~~pl~~~G~l~~~-~~--------- 228 (322)
|+||||+|+++.++++++.+..+|+++|++||++++.. +++++|+++||++++|+||++ |.+... ..
T Consensus 143 r~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~-g~l~~~~~~~~~~~~~~~ 221 (285)
T cd06660 143 RAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAG-GLLTGKYLPGAPPPEGDL 221 (285)
T ss_pred cEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccC-ceecCCCCCCCCCChhhH
Confidence 99999999999999999987788999999999999985 499999999999999999998 765111 11
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHhhhcC--CEEecCCCCHHHHHHhHhccCCCCCHHHHHHHHcc
Q 041428 229 DPTVERIAKKLNKSPGQILLKWGIHRG--TSVIPKSTHPDRIKENIKAFGWEIPEHDFQTLCSM 290 (322)
Q Consensus 229 ~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~~L~~ee~~~l~~~ 290 (322)
.+.+..++.+++++++|+|++|++++| +++|+|+++++|+++|+++..++|++++++.|+++
T Consensus 222 ~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 222 LEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 256889999999999999999999996 88999999999999999999899999999999863
No 11
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=4.2e-52 Score=380.06 Aligned_cols=256 Identities=26% Similarity=0.396 Sum_probs=222.1
Q ss_pred ceEEcCCCCccCcceeecccC----------ChhHHHHHHHHHHHcCCCeEecCCCcC---CHHHHHHHHHHHHhcCCCC
Q 041428 14 ESFKLLSGHTIPAVGLGTWKS----------GDEAFKSVFTAIVEGGYRHIDTAKQYG---VQENIGLALKEAMQTGIQR 80 (322)
Q Consensus 14 ~~~~l~tg~~vs~lglG~~~~----------~~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~e~~lG~~l~~~~~~~~~R 80 (322)
.+++|+ |.+||+||||||+. +.+++.++|+.|++.|||+||||+.|| +|+.+|++++. .|
T Consensus 8 ~~~~l~-g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~------~R 80 (290)
T PRK10376 8 GTFTLG-GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP------YP 80 (290)
T ss_pred CceecC-CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc------CC
Confidence 445666 99999999999874 356789999999999999999999998 58899999963 49
Q ss_pred CcEEEEecCC---------CCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHH
Q 041428 81 KDLFVTSKLW---------CADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREM 151 (322)
Q Consensus 81 ~~~~i~tK~~---------~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L 151 (322)
++++|+||++ ..+.+++.+++++++||++||+||||+|++|++....... ..+..++|++|
T Consensus 81 ~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~----------~~~~~~~~~~l 150 (290)
T PRK10376 81 DDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPA----------EGSIEEPLTVL 150 (290)
T ss_pred CeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCC----------CCCHHHHHHHH
Confidence 9999999973 2356789999999999999999999999999853211100 13478999999
Q ss_pred HHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCc-HHHHHHHHHcCceEEEeccCCCCCCCCCCCCCH
Q 041428 152 EKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRN-DKILEACKKNGIHVTAYSPLGSQGAGRDLIHDP 230 (322)
Q Consensus 152 ~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~ 230 (322)
++|+++||||+||||||++++++++.+.+ +++++|++||++.+. .+++++|+++||++++|+||++ + .....+
T Consensus 151 ~~l~~~Gkir~iGvSn~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g-~---~~~~~~ 224 (290)
T PRK10376 151 AELQRQGLVRHIGLSNVTPTQVAEARKIA--EIVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGG-F---TPLQSS 224 (290)
T ss_pred HHHHHCCceeEEEecCCCHHHHHHHHhhC--CeEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCC-C---ChhhhH
Confidence 99999999999999999999999998875 458999999999976 6799999999999999999975 4 223457
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhhcC--CEEecCCCCHHHHHHhHhccCCCCCHHHHHHHHcccc
Q 041428 231 TVERIAKKLNKSPGQILLKWGIHRG--TSVIPKSTHPDRIKENIKAFGWEIPEHDFQTLCSMTD 292 (322)
Q Consensus 231 ~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~~L~~ee~~~l~~~~~ 292 (322)
.+.++|+++|+|++|+||+|+++++ +++|+|++|++|+++|+++++++|++++++.|+++.+
T Consensus 225 ~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 225 TLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 8999999999999999999999874 7889999999999999999999999999999998754
No 12
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=4.4e-52 Score=384.22 Aligned_cols=262 Identities=21% Similarity=0.275 Sum_probs=222.1
Q ss_pred eEEc-CCCCccCcceeeccc-------CChhHHHHHHHHHHHcCCCeEecCCCcC---CHHHHHHHHHHHHhcCCCCCcE
Q 041428 15 SFKL-LSGHTIPAVGLGTWK-------SGDEAFKSVFTAIVEGGYRHIDTAKQYG---VQENIGLALKEAMQTGIQRKDL 83 (322)
Q Consensus 15 ~~~l-~tg~~vs~lglG~~~-------~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~e~~lG~~l~~~~~~~~~R~~~ 83 (322)
|++| +||++||.||||||+ .+.+++.++|++|++.|||+||||+.|| +|+.+|++|+.. +.+|+++
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~~~R~~v 77 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---GIPREKY 77 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---CCCcceE
Confidence 5677 799999999999986 3567899999999999999999999997 699999999864 4579999
Q ss_pred EEEecCCC----CCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCC
Q 041428 84 FVTSKLWC----ADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGL 159 (322)
Q Consensus 84 ~i~tK~~~----~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 159 (322)
+|+||++. .+.+++.+++++++||++||+||||+|++|+|+.... ..+..++|++|++|+++||
T Consensus 78 ~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~------------~~~~~~~~~~l~~l~~~Gk 145 (314)
T PLN02587 78 VVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSL------------DQIVNETIPALQKLKESGK 145 (314)
T ss_pred EEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcch------------hhhHHHHHHHHHHHHHCCC
Confidence 99999863 2568999999999999999999999999999864211 1345789999999999999
Q ss_pred ccEEEecCCCHHHHHHHHhhcC---CCCceeceeeCCCCCc-HHHHHHHHHcCceEEEeccCCCCCCCCCC----C--C-
Q 041428 160 VRDVGVCNFTLKKLNKLLNFAK---TKPSVCQMEMHPGWRN-DKILEACKKNGIHVTAYSPLGSQGAGRDL----I--H- 228 (322)
Q Consensus 160 ir~iGvs~~~~~~l~~~~~~~~---~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~via~~pl~~~G~l~~~----~--~- 228 (322)
||+||+|||++++++.+.+... +.+..+|+.|++.++. .+++++|+++||++++|+||++ |+|..- . .
T Consensus 146 ir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~ 224 (314)
T PLN02587 146 VRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAM-GLLTENGPPEWHPAP 224 (314)
T ss_pred eEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhc-cccCCCCCCCCCCCC
Confidence 9999999999998887776432 2334467888887764 6899999999999999999998 876211 0 0
Q ss_pred ------CHHHHHHHHhcCCCHHHHHHHHhhhcC--CEEecCCCCHHHHHHhHhccC----CCCCHHHHHHHHcccc
Q 041428 229 ------DPTVERIAKKLNKSPGQILLKWGIHRG--TSVIPKSTHPDRIKENIKAFG----WEIPEHDFQTLCSMTD 292 (322)
Q Consensus 229 ------~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~----~~L~~ee~~~l~~~~~ 292 (322)
.+.+.++|+++|+|++|+||+|++++| +++|+|+++++|+++|+++++ .+|+++++++|+++..
T Consensus 225 ~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~ 300 (314)
T PLN02587 225 PELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILA 300 (314)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhc
Confidence 124678999999999999999999998 578999999999999999976 3799999999998875
No 13
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1e-51 Score=376.35 Aligned_cols=247 Identities=33% Similarity=0.641 Sum_probs=214.5
Q ss_pred cceeeccc-----CChhHHHHHHHHHHHcCCCeEecCCCcC---CHHHHHHHHHHHHhcCCCCCcEEEEecC-----CCC
Q 041428 26 AVGLGTWK-----SGDEAFKSVFTAIVEGGYRHIDTAKQYG---VQENIGLALKEAMQTGIQRKDLFVTSKL-----WCA 92 (322)
Q Consensus 26 ~lglG~~~-----~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~e~~lG~~l~~~~~~~~~R~~~~i~tK~-----~~~ 92 (322)
+||||||+ .+.+++.++|+.|++.|||+||||+.|| +|+.+|++|++. +.+|++++|+||+ +..
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~---~~~r~~~~i~tK~~~~~~~~~ 77 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKS---RVPRDDIFISTKVYGDGKPEP 77 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHT---SSTGGGSEEEEEEESSSSTGG
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccc---ccccccccccccccccccccc
Confidence 58999985 6788999999999999999999999993 899999999983 5689999999999 667
Q ss_pred CCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCcccccc-HHHHHHHHHHHHHcCCccEEEecCCCHH
Q 041428 93 DLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFD-MEGVWREMEKLVKDGLVRDVGVCNFTLK 171 (322)
Q Consensus 93 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~l~~~Gkir~iGvs~~~~~ 171 (322)
..+++.+++++++||++||+||||+|++|+|+.. .. ..++|++|++|+++||||+||||||+++
T Consensus 78 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~---------------~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 142 (283)
T PF00248_consen 78 DYSPDSIRESLERSLERLGTDYIDLLLLHWPDPS---------------EDALEEVWEALEELKKEGKIRHIGVSNFSPE 142 (283)
T ss_dssp GSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTT---------------SSHHHHHHHHHHHHHHTTSEEEEEEES--HH
T ss_pred cccccccccccccccccccccchhcccccccccc---------------ccccchhhhhhhhcccccccccccccccccc
Confidence 8899999999999999999999999999999875 33 7999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCceeceeeCCCCC--cHHHHHHHHHcCceEEEeccCCCCCCCCCC-----------------CCCHHH
Q 041428 172 KLNKLLNFAKTKPSVCQMEMHPGWR--NDKILEACKKNGIHVTAYSPLGSQGAGRDL-----------------IHDPTV 232 (322)
Q Consensus 172 ~l~~~~~~~~~~~~~~q~~~~~~~~--~~~ll~~~~~~gi~via~~pl~~~G~l~~~-----------------~~~~~l 232 (322)
.++++.....++|+++|++||++.+ ..+++++|+++||++++|+|+++ |++... ...+.+
T Consensus 143 ~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~l 221 (283)
T PF00248_consen 143 QLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAG-GLLTGKYKSPPPPPSRASLRDAQELADAL 221 (283)
T ss_dssp HHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGG-GCGGTTTTTTTTSTTTSGSSTHGGGHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-CccccccccCCCcccccccchhhhhhhhh
Confidence 9999977788899999999999943 38899999999999999999998 766211 234579
Q ss_pred HHHHHhcCCCHHHHHHHHhhhcC--CEEecCCCCHHHHHHhHhccCCCCCHHHHHHHHccc
Q 041428 233 ERIAKKLNKSPGQILLKWGIHRG--TSVIPKSTHPDRIKENIKAFGWEIPEHDFQTLCSMT 291 (322)
Q Consensus 233 ~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~~L~~ee~~~l~~~~ 291 (322)
.++++++|+|++|+||+|+++++ .++|+|+++++|+++|+++++++||+++++.|+++.
T Consensus 222 ~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 222 RELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 99999999999999999999764 899999999999999999999999999999999874
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.6e-49 Score=338.92 Aligned_cols=262 Identities=27% Similarity=0.372 Sum_probs=237.0
Q ss_pred cceEEc-CCCCccCcceeeccc-----CChhHHHHHHHHHHHcCCCeEecCCCcC---CHHHHHHHHHHHHhcCCCCCcE
Q 041428 13 AESFKL-LSGHTIPAVGLGTWK-----SGDEAFKSVFTAIVEGGYRHIDTAKQYG---VQENIGLALKEAMQTGIQRKDL 83 (322)
Q Consensus 13 m~~~~l-~tg~~vs~lglG~~~-----~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~e~~lG~~l~~~~~~~~~R~~~ 83 (322)
|++++| ..|.++|++.+|+|+ ++..+....++.|++.||++||-|+.|| +|+++|++|+.. +-.||++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~---p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA---PGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC---hhhhhhe
Confidence 788999 589999999999988 5567889999999999999999999999 799999999865 3479999
Q ss_pred EEEecCC------------CCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHH
Q 041428 84 FVTSKLW------------CADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREM 151 (322)
Q Consensus 84 ~i~tK~~------------~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L 151 (322)
.|.||++ ..+.+.++|..++++||++|+|||+|+++||.|++. ++.+++.+++
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpL---------------md~eeVAeAf 142 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPL---------------MDAEEVAEAF 142 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCccc---------------CCHHHHHHHH
Confidence 9999994 357899999999999999999999999999999996 6789999999
Q ss_pred HHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCc---HHHHHHHHHcCceEEEeccCCCCCCCCCCCC
Q 041428 152 EKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRN---DKILEACKKNGIHVTAYSPLGSQGAGRDLIH 228 (322)
Q Consensus 152 ~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~via~~pl~~~G~l~~~~~ 228 (322)
..|++.||+|++|||||++.+++-+.+....+..+||+++|+++.+ .+.+++|+.+.|.+++||||+++|++...-+
T Consensus 143 ~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~~~ 222 (298)
T COG4989 143 THLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGDDK 222 (298)
T ss_pred HHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCCcc
Confidence 9999999999999999999999999988888889999999999987 6799999999999999999998443321111
Q ss_pred ----CHHHHHHHHhcC-CCHHHHHHHHhhhcC--CEEecCCCCHHHHHHhHhccCCCCCHHHHHHHHcccc
Q 041428 229 ----DPTVERIAKKLN-KSPGQILLKWGIHRG--TSVIPKSTHPDRIKENIKAFGWEIPEHDFQTLCSMTD 292 (322)
Q Consensus 229 ----~~~l~~la~~~~-~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~~L~~ee~~~l~~~~~ 292 (322)
.+.+..+|.++| .|..+++++|++.+| ..+|+|+.|++++++.++++++.||.++|=+|-.+..
T Consensus 223 ~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~ 293 (298)
T COG4989 223 FQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAI 293 (298)
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhc
Confidence 357889999999 799999999999999 7899999999999999999999999999999887754
No 15
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=3.3e-49 Score=360.64 Aligned_cols=246 Identities=17% Similarity=0.230 Sum_probs=208.8
Q ss_pred CCccCcceeecccC--------------ChhHHHHHHHHHHHcCCCeEecCCCcC-CHHHHHHHHHHHHhcCCCCCcEEE
Q 041428 21 GHTIPAVGLGTWKS--------------GDEAFKSVFTAIVEGGYRHIDTAKQYG-VQENIGLALKEAMQTGIQRKDLFV 85 (322)
Q Consensus 21 g~~vs~lglG~~~~--------------~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~e~~lG~~l~~~~~~~~~R~~~~i 85 (322)
+.+||+||||||++ +.+++.++|+.|++.|||+||||+.|| ||+.+|++|+.. .+++++|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~-----~~~~~~i 76 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP-----VPFRVTL 76 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC-----CceEeec
Confidence 57899999999853 357899999999999999999999999 799999999731 3467899
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEe
Q 041428 86 TSKLWCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGV 165 (322)
Q Consensus 86 ~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGv 165 (322)
+||.. +.+++.+++++++||+|||+||||+|++|+|++... ....++|++|++|+++||||+|||
T Consensus 77 ~tk~~--~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~-------------~~~~~~~~~l~~l~~~Gkir~iGv 141 (292)
T PRK14863 77 STVRA--DRGPDFVEAEARASLRRMGVERADAILVHSPTELFG-------------PHGAALWERLQALKDQGLFAKIGV 141 (292)
T ss_pred ccccc--cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcC-------------cchHHHHHHHHHHHHcCCcceEee
Confidence 99863 456899999999999999999999999999865211 112578999999999999999999
Q ss_pred cCCCHHHHHHHHhhcCCCCceeceeeCCCCCc---HHHHHHHHHcCceEEEeccCCCCCCCCCC-------CC-----CH
Q 041428 166 CNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRN---DKILEACKKNGIHVTAYSPLGSQGAGRDL-------IH-----DP 230 (322)
Q Consensus 166 s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~via~~pl~~~G~l~~~-------~~-----~~ 230 (322)
|||+++++..+... .+|+++|++||+++++ .+++++|+++||++++|+||++ |+|..- +. ..
T Consensus 142 Sn~~~~~~~~~~~~--~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~~~~~~~~ 218 (292)
T PRK14863 142 SAHASDDPVGVARR--FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLN-GLLFLPPDRVPAQLKGASGRLS 218 (292)
T ss_pred eccCHHHHHHHHhc--CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhC-ccccCCcccCccchhhhhHHHH
Confidence 99999998877653 5789999999999986 3599999999999999999998 876210 10 13
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhhcC--CEEecCCCCHHHHHHhHhccCCCCCHHHHHHHHc
Q 041428 231 TVERIAKKLNKSPGQILLKWGIHRG--TSVIPKSTHPDRIKENIKAFGWEIPEHDFQTLCS 289 (322)
Q Consensus 231 ~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~~L~~ee~~~l~~ 289 (322)
.+.+++++.++|++|+||+|++++| +++|+|+++++|+++|+++.+.+++++.+.+|..
T Consensus 219 ~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~ 279 (292)
T PRK14863 219 RVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAI 279 (292)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccC
Confidence 4566788889999999999999987 7789999999999999999988999888776654
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=3.3e-47 Score=341.68 Aligned_cols=274 Identities=21% Similarity=0.314 Sum_probs=233.3
Q ss_pred cceEEc-CCCCccCcceeeccc--------CChhHHHHHHHHHHHcCCCeEecCCCc--C-CHHHHHHHHHHHHhcCCCC
Q 041428 13 AESFKL-LSGHTIPAVGLGTWK--------SGDEAFKSVFTAIVEGGYRHIDTAKQY--G-VQENIGLALKEAMQTGIQR 80 (322)
Q Consensus 13 m~~~~l-~tg~~vs~lglG~~~--------~~~~~~~~~l~~Al~~Gi~~~DTA~~Y--g-~e~~lG~~l~~~~~~~~~R 80 (322)
|-||++ +||.++|.+|||+|+ .+.+.+.++|++|+++||||||||..| | ||..+|++|++. .|
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~-----~R 75 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG-----YR 75 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc-----cc
Confidence 789999 899999999999998 367889999999999999999999999 7 899999999975 69
Q ss_pred CcEEEEecCCC-CCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCC
Q 041428 81 KDLFVTSKLWC-ADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGL 159 (322)
Q Consensus 81 ~~~~i~tK~~~-~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 159 (322)
++|+++||+.. .--+.+.+++-++++|++||+||+|+|+||..... . +......++++.+++++++||
T Consensus 76 ekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e-~----------~~k~~~~g~~df~~kak~eGk 144 (391)
T COG1453 76 EKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTE-T----------WEKIERLGVFDFLEKAKAEGK 144 (391)
T ss_pred ceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHH-H----------HHHHHccChHHHHHHHHhcCc
Confidence 99999999952 23467899999999999999999999999986541 1 000112347999999999999
Q ss_pred ccEEEecCCC-HHHHHHHHhhcCCCCceeceeeCCCCCc----HHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHH
Q 041428 160 VRDVGVCNFT-LKKLNKLLNFAKTKPSVCQMEMHPGWRN----DKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVER 234 (322)
Q Consensus 160 ir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~----~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~ 234 (322)
||++|+|.|+ .+.+.++++... ++++|+++|.++.. .+.+++|.++|++|+.++|+.++|++... -+++.+
T Consensus 145 Ir~~GFSfHgs~e~~~~iv~a~~--~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~v--P~~~~~ 220 (391)
T COG1453 145 IRNAGFSFHGSTEVFKEIVDAYP--WDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNV--PEKLEE 220 (391)
T ss_pred EEEeeecCCCCHHHHHHHHhcCC--cceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCC--CHHHHH
Confidence 9999999996 678888888744 79999999999986 38999999999999999999983322111 378899
Q ss_pred HHHhcC--CCHHHHHHHHhhhcC--CEEecCCCCHHHHHHhHhccCC--C-CCHHHHHHHHccccCC-----cccccccc
Q 041428 235 IAKKLN--KSPGQILLKWGIHRG--TSVIPKSTHPDRIKENIKAFGW--E-IPEHDFQTLCSMTDQK-----RLLHGEIL 302 (322)
Q Consensus 235 la~~~~--~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~--~-L~~ee~~~l~~~~~~~-----~~~~g~~~ 302 (322)
+++..+ .||+..|+||++++| .++++|+++++|++||++.++. + ||++|+..|..+.+.. ..|++ |+
T Consensus 221 l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~~~~~~v~Ct~-C~ 299 (391)
T COG1453 221 LCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEIYRESLKVPCTG-CR 299 (391)
T ss_pred HHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHhcCCCcc-cc
Confidence 999876 689999999999998 7889999999999999998874 3 9999999988876652 23899 99
Q ss_pred cccCC
Q 041428 303 FVNSS 307 (322)
Q Consensus 303 ~~~~~ 307 (322)
||.|+
T Consensus 300 yC~PC 304 (391)
T COG1453 300 YCLPC 304 (391)
T ss_pred ccCcC
Confidence 99985
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=3e-43 Score=302.65 Aligned_cols=266 Identities=21% Similarity=0.304 Sum_probs=222.5
Q ss_pred CcceEEc-CCCCccCcceeeccc-------CChhHHHHHHHHHHHcCCCeEecCCCcC---CHHHHHHHHHHHHhcCCCC
Q 041428 12 KAESFKL-LSGHTIPAVGLGTWK-------SGDEAFKSVFTAIVEGGYRHIDTAKQYG---VQENIGLALKEAMQTGIQR 80 (322)
Q Consensus 12 ~m~~~~l-~tg~~vs~lglG~~~-------~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~e~~lG~~l~~~~~~~~~R 80 (322)
.|.|+.| +||.+||+||||+.. .+.++....+..|+.+|||+|||++.|| +|+.+|.++++ +||
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~-----vPR 95 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKD-----VPR 95 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhh-----CCh
Confidence 6899999 899999999999964 3567777888889999999999999999 79999999986 499
Q ss_pred CcEEEEecCCC--------CCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHH
Q 041428 81 KDLFVTSKLWC--------ADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREME 152 (322)
Q Consensus 81 ~~~~i~tK~~~--------~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 152 (322)
+..||+||++. .+++++.+++++++||+||++||+|++++|..+..... +..+.|++.+|+
T Consensus 96 ~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~l-----------d~vl~Etlp~Le 164 (342)
T KOG1576|consen 96 EAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNL-----------DIVLNETLPALE 164 (342)
T ss_pred hheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccc-----------cHHHHHHHHHHH
Confidence 99999999953 57899999999999999999999999999997764220 255789999999
Q ss_pred HHHHcCCccEEEecCCCHHHHHHHHhhcCCCCceec--eeeCCCCCc-HHHHHHHHHcCceEEEeccCCCCCCC-----C
Q 041428 153 KLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQ--MEMHPGWRN-DKILEACKKNGIHVTAYSPLGSQGAG-----R 224 (322)
Q Consensus 153 ~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q--~~~~~~~~~-~~ll~~~~~~gi~via~~pl~~~G~l-----~ 224 (322)
+++++||||+|||+.++.+.+.++++...-..+++- ++|++.+.. -..+++.+..|++|++-++++. |+| +
T Consensus 165 ~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~Asalsm-gLLt~~gp~ 243 (342)
T KOG1576|consen 165 ELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSM-GLLTNQGPP 243 (342)
T ss_pred HHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHH-HHhhcCCCC
Confidence 999999999999999999999999987664445544 677766665 6788888999999999999998 888 2
Q ss_pred CCCC--------CHHHHHHHHhcCCCHHHHHHHHhhhcC--CEEecCCCCHHHHHHhHhccCCCCCH-HHHHHHHccccC
Q 041428 225 DLIH--------DPTVERIAKKLNKSPGQILLKWGIHRG--TSVIPKSTHPDRIKENIKAFGWEIPE-HDFQTLCSMTDQ 293 (322)
Q Consensus 225 ~~~~--------~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~~L~~-ee~~~l~~~~~~ 293 (322)
++.. ..+..+.|++.|++.+.+|+.|+++.+ .++++|+++.++++.|+++-...||. ++...+.-+.+.
T Consensus 244 ~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl~~~r~~ 323 (342)
T KOG1576|consen 244 PWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVLRILREI 323 (342)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHHHHHHHH
Confidence 2221 134567788899999999999999987 88999999999999999986667887 555555444444
Q ss_pred C
Q 041428 294 K 294 (322)
Q Consensus 294 ~ 294 (322)
+
T Consensus 324 ~ 324 (342)
T KOG1576|consen 324 L 324 (342)
T ss_pred h
Confidence 4
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.49 E-value=3.7e-07 Score=78.63 Aligned_cols=139 Identities=17% Similarity=0.288 Sum_probs=97.7
Q ss_pred CCCcEEEEecCCCCCCChHHHHHHHHHHHHHhC----CCcccee------EeecCCCCCCCCCC------CCCC-Ccccc
Q 041428 79 QRKDLFVTSKLWCADLSPDRVRSALNNTLQELQ----LDYLDLY------LIHWPFRLKEGASR------PPKD-GEVLE 141 (322)
Q Consensus 79 ~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg----~d~iDl~------~lH~p~~~~~~~~~------~~~~-~~~~~ 141 (322)
.++++-|..|.+..+..-++++...++-++-+- +..||.+ ..|.-.-..++..+ +..+ .+..-
T Consensus 73 ~~~E~si~vklf~ndh~~e~in~~eeelmkVf~~lh~v~~id~~st~~v~~~~~~~l~v~~lssv~ia~~sied~~n~~~ 152 (285)
T KOG3023|consen 73 KQEEYSIIVKLFFNDHENEDINKREEELMKVFYNLHMVFGIDFVSTLVVSFPHITFLKVSGLSSVNIAYDSIEDIPNQEI 152 (285)
T ss_pred cccccceeeEEeecccchhhhcHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccceeecccCccchhccCChhhhcchhhH
Confidence 566777888887667666777777776555442 1223332 11211111111110 0011 11112
Q ss_pred ccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCc-HHHHHHHHHcCceEEEeccC
Q 041428 142 FDMEGVWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRN-DKILEACKKNGIHVTAYSPL 217 (322)
Q Consensus 142 ~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~via~~pl 217 (322)
....+.|+.||+++.+|||..||+|.|++.+++++++.+.+.|..+|+++.-.+.- .++..+|.+++|.+..++--
T Consensus 153 e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHsDP 229 (285)
T KOG3023|consen 153 ESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHSDP 229 (285)
T ss_pred HHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecCCc
Confidence 34678999999999999999999999999999999999999999999999887764 89999999999999998754
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=87.55 E-value=4.6 Score=34.48 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCc-------HHHHHHHHHcCceEEEeccCC
Q 041428 146 GVWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRN-------DKILEACKKNGIHVTAYSPLG 218 (322)
Q Consensus 146 ~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-------~~ll~~~~~~gi~via~~pl~ 218 (322)
...+.|+++.+-|+---|++.||.-+....-+-..+--|..-..+|.-++.+ .+.-++|++.|+.|.-..++.
T Consensus 90 ~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 90 RPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLD 169 (193)
T ss_pred HHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEc
Confidence 3444577888889888899999988877666654444467778888888765 789999999999999999997
Q ss_pred C
Q 041428 219 S 219 (322)
Q Consensus 219 ~ 219 (322)
+
T Consensus 170 ~ 170 (193)
T PF07021_consen 170 G 170 (193)
T ss_pred C
Confidence 6
No 20
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=82.76 E-value=30 Score=32.88 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=77.1
Q ss_pred HHHHHHHHHHH-----------HHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCcc-EEE
Q 041428 97 DRVRSALNNTL-----------QELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVR-DVG 164 (322)
Q Consensus 97 ~~i~~~~~~SL-----------~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iG 164 (322)
+.+++.++... +.+| +|++.||.-+.+..+. +.+.++..+..++..+.=.+= -|+
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~----------d~~~~e~a~~vk~V~~av~vPLIL~ 194 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLD----------DKSPSEAAKVLEDVLQAVDVPIVIG 194 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCcccc----------ccCHHHHHHHHHHHHHhCCCCEEEe
Confidence 55665555544 4444 7899998754432111 134567777777775543322 233
Q ss_pred ec---CCCHHHHHHHHhhcCC-CCceeceeeCCCCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcC
Q 041428 165 VC---NFTLKKLNKLLNFAKT-KPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLN 240 (322)
Q Consensus 165 vs---~~~~~~l~~~~~~~~~-~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~ 240 (322)
=| ..+++.+++.++..+- ++.++-..... .-..+.+.|+++|..|++++|..- | ....+.....++|
T Consensus 195 gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Di-n------~ak~Ln~kL~~~G 265 (389)
T TIGR00381 195 GSGNPEKDPLVLEKAAEVAEGERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDI-N------MQKTLNRYLLKRG 265 (389)
T ss_pred CCCCCcCCHHHHHHHHHHhCCCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcH-H------HHHHHHHHHHHcC
Confidence 33 5589999999998764 55544443321 227899999999999999998754 3 1234444444666
Q ss_pred CCHHH
Q 041428 241 KSPGQ 245 (322)
Q Consensus 241 ~s~~q 245 (322)
+.+.+
T Consensus 266 v~~eD 270 (389)
T TIGR00381 266 LMPRD 270 (389)
T ss_pred CCHHH
Confidence 65544
No 21
>PRK08609 hypothetical protein; Provisional
Probab=81.46 E-value=63 Score=32.59 Aligned_cols=183 Identities=16% Similarity=0.225 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHcCCCeEecCCCcC--------CHHHHHHHH---HHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHH
Q 041428 38 AFKSVFTAIVEGGYRHIDTAKQYG--------VQENIGLAL---KEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNT 106 (322)
Q Consensus 38 ~~~~~l~~Al~~Gi~~~DTA~~Yg--------~e~~lG~~l---~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~S 106 (322)
...+++++|.+.|+++|=.++++. +...+-..+ +.. ......=+|++..-+ ++.++....-.+..
T Consensus 350 sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l-~~~~~~i~Il~GiEv---~i~~~g~~d~~~~~ 425 (570)
T PRK08609 350 SIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKAL-NEKYPEIDILSGIEM---DILPDGSLDYDDEV 425 (570)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHH-HHhcCCCeEEEEEEE---eecCCcchhhcHHH
Confidence 356799999999999998888862 222222222 221 000111123333333 11222222222334
Q ss_pred HHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecC------CC--HHHHHHHHh
Q 041428 107 LQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCN------FT--LKKLNKLLN 178 (322)
Q Consensus 107 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~------~~--~~~l~~~~~ 178 (322)
|+. .||+ +.-+|++.. .+..++++.+.++.+.|.+.-||=-. +. ...++++++
T Consensus 426 L~~--~D~v-I~SvH~~~~----------------~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~ 486 (570)
T PRK08609 426 LAE--LDYV-IAAIHSSFS----------------QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIE 486 (570)
T ss_pred HHh--hCEE-EEEeecCCC----------------CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHH
Confidence 443 4555 667786422 23467788899999999877665332 11 233344444
Q ss_pred hcCCCCceeceeeCCCCC--cHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHH
Q 041428 179 FAKTKPSVCQMEMHPGWR--NDKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQI 246 (322)
Q Consensus 179 ~~~~~~~~~q~~~~~~~~--~~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~ql 246 (322)
.+.-.=.++|++.+++.. ...++..|++.|+.+..-|--.... .+-..+....+|.+-+.++.++
T Consensus 487 ~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igSDAH~~~---~l~~~~~~v~~ar~~~~~~~~v 553 (570)
T PRK08609 487 LAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAINTDAHHTE---MLDDMKYGVATARKGWIQKDRV 553 (570)
T ss_pred HHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEEECCCCChh---hhCcHHHHHHHHHHcCCCHHHc
Confidence 322112466777665532 3789999999999765544332211 2223355567777777766653
No 22
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=81.12 E-value=9.9 Score=36.24 Aligned_cols=80 Identities=10% Similarity=0.027 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHcCCCeEecCCCcCCHHHHHHHHHHHHhcCCCCCcEEEEecCC-CCCCChHHHHHHHHHHHHHhCCCcc
Q 041428 37 EAFKSVFTAIVEGGYRHIDTAKQYGVQENIGLALKEAMQTGIQRKDLFVTSKLW-CADLSPDRVRSALNNTLQELQLDYL 115 (322)
Q Consensus 37 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~-~~~~~~~~i~~~~~~SL~~Lg~d~i 115 (322)
.....++++|++.|++++|||.+.-....+....+ +..+.+..-++ .+..+--.+...+++-.+ .+++|
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~--------~Agit~v~~~G~dPGi~nv~a~~a~~~~~~--~i~si 148 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAK--------KAGITAVLGCGFDPGITNVLAAYAAKELFD--EIESI 148 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHH--------HcCeEEEcccCcCcchHHHHHHHHHHHhhc--cccEE
Confidence 34458999999999999999987755322333332 33455555553 223332223333333322 58899
Q ss_pred ceeEeecCCCC
Q 041428 116 DLYLIHWPFRL 126 (322)
Q Consensus 116 Dl~~lH~p~~~ 126 (322)
|+|..+.|++.
T Consensus 149 ~iy~g~~g~~~ 159 (389)
T COG1748 149 DIYVGGLGEHG 159 (389)
T ss_pred EEEEecCCCCC
Confidence 99999988775
No 23
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=80.75 E-value=38 Score=32.21 Aligned_cols=54 Identities=11% Similarity=0.275 Sum_probs=36.0
Q ss_pred ecccCChhHHHHHHHHHHHcCCCeEecCCCcC-------CHHHHHHHHHHHHhcCCCCCcEEEEecC
Q 041428 30 GTWKSGDEAFKSVFTAIVEGGYRHIDTAKQYG-------VQENIGLALKEAMQTGIQRKDLFVTSKL 89 (322)
Q Consensus 30 G~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-------~e~~lG~~l~~~~~~~~~R~~~~i~tK~ 89 (322)
|..+++ .++.+++..|++.| ....|+ +.+.+.+.+-+.....+..+++|+++-+
T Consensus 75 ~~~~ts-~~a~~Av~~al~Sg-----k~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC 135 (447)
T KOG0259|consen 75 PCFRTS-QEAEQAVVDALRSG-----KGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGC 135 (447)
T ss_pred ccccCC-HHHHHHHHHHHhcC-----CCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccc
Confidence 334444 56778888999998 466786 3555666655433333678899998866
No 24
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=78.86 E-value=27 Score=31.26 Aligned_cols=101 Identities=15% Similarity=0.145 Sum_probs=65.4
Q ss_pred HHHHHHcCCccEEEe-cCCCHHHHHHHHhhcCCCCceeceeeCCCCCc--HHHHHHHHHcCceEEEeccCCCCCCCCCCC
Q 041428 151 MEKLVKDGLVRDVGV-CNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRN--DKILEACKKNGIHVTAYSPLGSQGAGRDLI 227 (322)
Q Consensus 151 L~~l~~~Gkir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~via~~pl~~~G~l~~~~ 227 (322)
|.+-.++|+. -+|+ .......+.+++...++++.++-.+-++++.. ..++..|+..|+..+..-|-..
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~-------- 80 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE-------- 80 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC--------
Confidence 4444555774 4553 33334455666666677777777777777665 6788899999999999887643
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHhhhcC--CEEecCCCCHHHHHHhHhccCC
Q 041428 228 HDPTVERIAKKLNKSPGQILLKWGIHRG--TSVIPKSTHPDRIKENIKAFGW 277 (322)
Q Consensus 228 ~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~ 277 (322)
...+..+|..| .+++|-..|.+++++.+++..+
T Consensus 81 -----------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 81 -----------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred -----------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 12344555555 4566666777777777666555
No 25
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=78.64 E-value=54 Score=30.09 Aligned_cols=150 Identities=15% Similarity=0.131 Sum_probs=90.3
Q ss_pred ChhHHHHHHHHHHHcCCCeEecCCCcCCHHH--HHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCC
Q 041428 35 GDEAFKSVFTAIVEGGYRHIDTAKQYGVQEN--IGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQL 112 (322)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~--lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~ 112 (322)
+.++..+.++.+++.|++.|+.--.-..+.. .=+++++. .+ ++-|.-++. ..++.+.. ..+-+.|+.+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~----~g--~~~l~vD~n-~~~~~~~A-~~~~~~l~~~-- 203 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREA----AP--DARLRVDAN-QGWTPEEA-VELLRELAEL-- 203 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHh----CC--CCeEEEeCC-CCcCHHHH-HHHHHHHHhc--
Confidence 4566777888889999999987421111221 22233332 22 566777763 23443332 2333344444
Q ss_pred CccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhhcCCCCceeceee
Q 041428 113 DYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVR-DVGVCNFTLKKLNKLLNFAKTKPSVCQMEM 191 (322)
Q Consensus 113 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~ 191 (322)
++.++-.|-+ ..-++.+.+|++...+. ..|=+-++.+.+.++++.... +++|+..
T Consensus 204 ---~l~~iEeP~~-------------------~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~--d~v~~~~ 259 (316)
T cd03319 204 ---GVELIEQPVP-------------------AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAY--DGINIKL 259 (316)
T ss_pred ---CCCEEECCCC-------------------CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCC--CEEEEec
Confidence 4444444432 12355677888887776 334455678888888887554 7788876
Q ss_pred CCCCC---cHHHHHHHHHcCceEEEeccCC
Q 041428 192 HPGWR---NDKILEACKKNGIHVTAYSPLG 218 (322)
Q Consensus 192 ~~~~~---~~~ll~~~~~~gi~via~~pl~ 218 (322)
...-. ...+..+|+++|+.++.++-+.
T Consensus 260 ~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~ 289 (316)
T cd03319 260 MKTGGLTEALRIADLARAAGLKVMVGCMVE 289 (316)
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEECchh
Confidence 55422 2679999999999999976653
No 26
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=76.11 E-value=41 Score=30.38 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=64.9
Q ss_pred HHHHHHcCCccEEEe-cCCCHHHHHHHHhhcCCCCceeceeeCCCCCc--HHHHHHHHHcCceEEEeccCCCCCCCCCCC
Q 041428 151 MEKLVKDGLVRDVGV-CNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRN--DKILEACKKNGIHVTAYSPLGSQGAGRDLI 227 (322)
Q Consensus 151 L~~l~~~Gkir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~via~~pl~~~G~l~~~~ 227 (322)
|.+-.++|+.- +|. .......+.+++...++++.++=.+-++++.. ..++..++..|+..++.-|-..
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~-------- 79 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS-------- 79 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC--------
Confidence 44555567753 443 34444455566666677777777777777766 5688889999999988877432
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHhhhcC--CEEecCCCCHHHHHHhHhccCC
Q 041428 228 HDPTVERIAKKLNKSPGQILLKWGIHRG--TSVIPKSTHPDRIKENIKAFGW 277 (322)
Q Consensus 228 ~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~ 277 (322)
...+..+|..| .+++|-..|+++.++.+++..+
T Consensus 80 -----------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 -----------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred -----------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 13345566665 4556666777777777666655
No 27
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=75.94 E-value=69 Score=29.89 Aligned_cols=148 Identities=15% Similarity=0.115 Sum_probs=87.6
Q ss_pred ChhHHHHHHHHHHHcCCCeEecCCCcCC------H--HHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHH
Q 041428 35 GDEAFKSVFTAIVEGGYRHIDTAKQYGV------Q--ENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNT 106 (322)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~------e--~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~S 106 (322)
+.++..+..+.+.+.|++.|-.--..+. + ...=+++++. -.+++.|..... ..++.+.. .+-
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~-----~g~~~~l~vDaN-~~~~~~~a----~~~ 208 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA-----VGPDVDLMVDAN-GRWDLAEA----IRL 208 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh-----hCCCCEEEEECC-CCCCHHHH----HHH
Confidence 4566777888888999998875322221 1 1122344443 134556666652 23343332 233
Q ss_pred HHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhhcCCCCc
Q 041428 107 LQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVR-DVGVCNFTLKKLNKLLNFAKTKPS 185 (322)
Q Consensus 107 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~ 185 (322)
+++|. ..++.+++.|-+. +-++.+.+|++.-.+. ..|=+.++++.+.++++.... +
T Consensus 209 ~~~l~--~~~i~~iEqP~~~-------------------~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~--d 265 (357)
T cd03316 209 ARALE--EYDLFWFEEPVPP-------------------DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAV--D 265 (357)
T ss_pred HHHhC--ccCCCeEcCCCCc-------------------cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCC--C
Confidence 34443 2355566655331 2456677788776665 334455678899998876543 7
Q ss_pred eeceeeCCCC---CcHHHHHHHHHcCceEEEec
Q 041428 186 VCQMEMHPGW---RNDKILEACKKNGIHVTAYS 215 (322)
Q Consensus 186 ~~q~~~~~~~---~~~~ll~~~~~~gi~via~~ 215 (322)
++|+.....- +...+...|+++|+.++.++
T Consensus 266 ~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 266 IIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred EEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 7777654432 23789999999999988765
No 28
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=73.61 E-value=53 Score=32.07 Aligned_cols=115 Identities=10% Similarity=0.059 Sum_probs=59.0
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCC----ccceeEeecCCCCCCCCCCC
Q 041428 58 KQYGVQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQLD----YLDLYLIHWPFRLKEGASRP 133 (322)
Q Consensus 58 ~~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d----~iDl~~lH~p~~~~~~~~~~ 133 (322)
-.||.++.+-++|++..+...+.+=++|.|-+.. ..--+.+..-+++.-++++-+ .+.++.+|.|......
T Consensus 66 ~VfGG~~~L~~~I~~~~~~~~~p~~I~V~tTC~~-eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~---- 140 (454)
T cd01973 66 AVFGGAKRVEEGVLVLARRYPDLRVIPIITTCST-EIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGSM---- 140 (454)
T ss_pred eEECcHHHHHHHHHHHHHhcCCCCEEEEECCchH-hhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCCH----
Confidence 4578888888899876443212344677777622 111223333333322222111 4788889988775320
Q ss_pred CCCCccccccHHHHHHHHH-HHHH----cCCccEEEecC--CCHHHHHHHHhhcCCCC
Q 041428 134 PKDGEVLEFDMEGVWREME-KLVK----DGLVRDVGVCN--FTLKKLNKLLNFAKTKP 184 (322)
Q Consensus 134 ~~~~~~~~~~~~~~~~~L~-~l~~----~Gkir~iGvs~--~~~~~l~~~~~~~~~~~ 184 (322)
..-...+++++- .+.. +++|--||-.+ -+.+.+.++++..++.+
T Consensus 141 -------~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v 191 (454)
T cd01973 141 -------VTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEA 191 (454)
T ss_pred -------HHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCE
Confidence 011223333332 2222 45677776332 23467778888776543
No 29
>PRK13796 GTPase YqeH; Provisional
Probab=73.10 E-value=71 Score=30.17 Aligned_cols=121 Identities=21% Similarity=0.208 Sum_probs=75.4
Q ss_pred CChhHHHHHHHHHHHcC---CCeEecCCCcCCHHHHHHHHHHHHhcCCCCCcEEEEecCC--CCCCChHHHHHHHHHHHH
Q 041428 34 SGDEAFKSVFTAIVEGG---YRHIDTAKQYGVQENIGLALKEAMQTGIQRKDLFVTSKLW--CADLSPDRVRSALNNTLQ 108 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~G---i~~~DTA~~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~--~~~~~~~~i~~~~~~SL~ 108 (322)
.+.++..++++..-+.- +-.+|..+.-++- -..|.+.. + .+.-++|.+|.- ......+.+...++...+
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~---~~~L~~~~--~-~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k 127 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSW---IPGLHRFV--G-NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAK 127 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCch---hHHHHHHh--C-CCCEEEEEEchhhCCCccCHHHHHHHHHHHHH
Confidence 45667777777776655 4567766554431 11233221 1 456788999982 122234456666666667
Q ss_pred HhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 041428 109 ELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKLNKL 176 (322)
Q Consensus 109 ~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~ 176 (322)
.+|....+++.+..-.. ...+++++.+.++.+.+.+-.+|.+|..-..+-..
T Consensus 128 ~~g~~~~~v~~vSAk~g----------------~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~ 179 (365)
T PRK13796 128 ELGLRPVDVVLISAQKG----------------HGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINR 179 (365)
T ss_pred hcCCCcCcEEEEECCCC----------------CCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHH
Confidence 77765456666543221 34688899998888888899999999986655433
No 30
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=72.64 E-value=22 Score=31.62 Aligned_cols=117 Identities=17% Similarity=0.114 Sum_probs=59.2
Q ss_pred CChhHHHHHHHHHHHcCCCeEecCCCcCCHHHH----------------HHHHHHHHhcCCCCCcEEEEecCCCCCCChH
Q 041428 34 SGDEAFKSVFTAIVEGGYRHIDTAKQYGVQENI----------------GLALKEAMQTGIQRKDLFVTSKLWCADLSPD 97 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~l----------------G~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~ 97 (322)
++.++..++.+.|-+.||.+|=|...-.+-..+ ..-|=+.+++ ....++|+|=. .+.+
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~--tgkPvIlSTG~----stl~ 126 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAK--TGKPVILSTGM----STLE 126 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT--T-S-EEEE-TT------HH
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHH--hCCcEEEECCC----CCHH
Confidence 788999999999999999999876543221111 1111111111 24447777754 3445
Q ss_pred HHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 041428 98 RVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKL 173 (322)
Q Consensus 98 ~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l 173 (322)
.|.++++...+. ..-++.++|+...+.. .+.+--+..|..|++.=- --||+|.|+....
T Consensus 127 EI~~Av~~~~~~---~~~~l~llHC~s~YP~-------------~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~ 185 (241)
T PF03102_consen 127 EIERAVEVLREA---GNEDLVLLHCVSSYPT-------------PPEDVNLRVIPTLKERFG-VPVGYSDHTDGIE 185 (241)
T ss_dssp HHHHHHHHHHHH---CT--EEEEEE-SSSS---------------GGG--TTHHHHHHHHST-SEEEEEE-SSSSH
T ss_pred HHHHHHHHHHhc---CCCCEEEEecCCCCCC-------------ChHHcChHHHHHHHHhcC-CCEEeCCCCCCcH
Confidence 666665554333 3478999999776532 111233445555553322 5789999986543
No 31
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=71.93 E-value=41 Score=32.48 Aligned_cols=109 Identities=14% Similarity=0.191 Sum_probs=61.2
Q ss_pred CcCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCC-----CccceeEeecCCCCCCCCCCC
Q 041428 59 QYGVQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQL-----DYLDLYLIHWPFRLKEGASRP 133 (322)
Q Consensus 59 ~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~-----d~iDl~~lH~p~~~~~~~~~~ 133 (322)
.||.++.+-+++++..+. .+.+-++|.|-+- ++-+-..++...++++. ..+.++.+|.|......
T Consensus 62 V~Gg~~~L~~~i~~~~~~-~~p~~I~v~~tC~-----~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~---- 131 (428)
T cd01965 62 VFGGEDNLIEALKNLLSR-YKPDVIGVLTTCL-----TETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSH---- 131 (428)
T ss_pred eECcHHHHHHHHHHHHHh-cCCCEEEEECCcc-----hhhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcH----
Confidence 467888888898876543 2445566776652 22333334444444442 23667778887654220
Q ss_pred CCCCccccccHHHHHHHHHH-H------HHcCCccEEEecCC---CHHHHHHHHhhcCCCC
Q 041428 134 PKDGEVLEFDMEGVWREMEK-L------VKDGLVRDVGVCNF---TLKKLNKLLNFAKTKP 184 (322)
Q Consensus 134 ~~~~~~~~~~~~~~~~~L~~-l------~~~Gkir~iGvs~~---~~~~l~~~~~~~~~~~ 184 (322)
......++++|-+ + ++.++|--||-++. +.+.+.++++..++++
T Consensus 132 -------~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v 185 (428)
T cd01965 132 -------ETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEP 185 (428)
T ss_pred -------HHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCE
Confidence 0122334444433 2 23456777775554 3678888888877643
No 32
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=71.22 E-value=49 Score=29.49 Aligned_cols=99 Identities=14% Similarity=0.081 Sum_probs=61.6
Q ss_pred HHHHcCCccEEEe-cCCCHHHHHHHHhhcCCCCceeceeeCCCCCc--HHHHHHHHHcCceEEEeccCCCCCCCCCCCCC
Q 041428 153 KLVKDGLVRDVGV-CNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRN--DKILEACKKNGIHVTAYSPLGSQGAGRDLIHD 229 (322)
Q Consensus 153 ~l~~~Gkir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~ 229 (322)
+-.++|+. -+|+ ++.....+.+++...++++.++=.+-++++.. ..++..++..|+..+..-|-..
T Consensus 5 ~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~---------- 73 (249)
T TIGR03239 5 QDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNE---------- 73 (249)
T ss_pred HHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC----------
Confidence 33444664 3443 33444455666666677667776676777665 6788888999999998887543
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhhhcC--CEEecCCCCHHHHHHhHhccCC
Q 041428 230 PTVERIAKKLNKSPGQILLKWGIHRG--TSVIPKSTHPDRIKENIKAFGW 277 (322)
Q Consensus 230 ~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~ 277 (322)
...++.+|..| .+++|-..|.+++++.+++..+
T Consensus 74 ---------------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 74 ---------------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred ---------------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 12334455555 4556666777777766655554
No 33
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=70.17 E-value=61 Score=32.03 Aligned_cols=124 Identities=14% Similarity=0.105 Sum_probs=75.5
Q ss_pred ccHHHHHHHHHHHHHcCCccEEEecCC----CHHHHHHHHhh----cCCCCc-eeceeeCCCCCcHHHHHHHHHcCceEE
Q 041428 142 FDMEGVWREMEKLVKDGLVRDVGVCNF----TLKKLNKLLNF----AKTKPS-VCQMEMHPGWRNDKILEACKKNGIHVT 212 (322)
Q Consensus 142 ~~~~~~~~~L~~l~~~Gkir~iGvs~~----~~~~l~~~~~~----~~~~~~-~~q~~~~~~~~~~~ll~~~~~~gi~vi 212 (322)
.+.+.+++.++.++++..++++-++.- +...+.++++. ...++. ..+...+......++++..++.|+.-+
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v 301 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVHI 301 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcEE
Confidence 467889999999988766888877642 34444444332 212211 133444444446789999999999877
Q ss_pred EeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhcC----CEEecCC--CCHHHHHHhHh
Q 041428 213 AYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQILLKWGIHRG----TSVIPKS--THPDRIKENIK 273 (322)
Q Consensus 213 a~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~----~~~i~g~--~~~~~l~~nl~ 273 (322)
..+.=. ...+.++.+.+.+......-+++.+.+.| ...|+|. .+.+.+.+.++
T Consensus 302 ~iGiES--------~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~ 360 (497)
T TIGR02026 302 SLGTEA--------AAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYR 360 (497)
T ss_pred EEcccc--------CCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHH
Confidence 754432 23456666655444334445666677776 3456664 66777777764
No 34
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=69.97 E-value=3.3 Score=38.80 Aligned_cols=53 Identities=17% Similarity=0.345 Sum_probs=36.0
Q ss_pred cCCccEEEecCCCHHHHHHHHhhcCCCCcee--ceeeCCCCCcHHHHHHHHHcCce
Q 041428 157 DGLVRDVGVCNFTLKKLNKLLNFAKTKPSVC--QMEMHPGWRNDKILEACKKNGIH 210 (322)
Q Consensus 157 ~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~--q~~~~~~~~~~~ll~~~~~~gi~ 210 (322)
-|+||++||--++++++.++...... -++. |....+.-....+++.|++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e-~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENE-KDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccH-HHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 48999999999999999888765432 2333 33333222336677778877775
No 35
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=69.49 E-value=28 Score=31.69 Aligned_cols=115 Identities=12% Similarity=0.166 Sum_probs=75.1
Q ss_pred HHHHHHHcCCccEEEecCCCHHHHHHHHhhcCCCC------ceeceeeCCCCCcHHHHHHHHHcCceEEEeccCCCCCCC
Q 041428 150 EMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKP------SVCQMEMHPGWRNDKILEACKKNGIHVTAYSPLGSQGAG 223 (322)
Q Consensus 150 ~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~------~~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl~~~G~l 223 (322)
.++.|....++..+-=++.+.+.+.++.+...-++ ..+.+-+--..|+..+.+++++-++-++.-+.-
T Consensus 146 d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~n------ 219 (280)
T TIGR00216 146 DLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKN------ 219 (280)
T ss_pred HHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCC------
Confidence 34555445566666666777777766665433211 112222222223477999999988877663322
Q ss_pred CCCCCCHHHHHHHHhcCC------CHHHHHHHHhhhcC-CEEecCCCCHHHHHHhH
Q 041428 224 RDLIHDPTVERIAKKLNK------SPGQILLKWGIHRG-TSVIPKSTHPDRIKENI 272 (322)
Q Consensus 224 ~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~~nl 272 (322)
--+..+|.++|++.+. +..++-..|..... +.+..|+|+|+.+-+.+
T Consensus 220 --SsNT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 220 --SSNTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred --CchHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 2345789999999873 67899999998766 78889999999886654
No 36
>PLN02489 homocysteine S-methyltransferase
Probab=68.73 E-value=1e+02 Score=28.79 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=87.4
Q ss_pred CChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcC--CccEEEecCCC--
Q 041428 94 LSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDG--LVRDVGVCNFT-- 169 (322)
Q Consensus 94 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G--kir~iGvs~~~-- 169 (322)
.+.+.+.....+-++.|--..+|++.+-.. ....|+..+++-+++.+ +--.+.++..+
T Consensus 160 ~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~------------------~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~ 221 (335)
T PLN02489 160 VTLEKLKDFHRRRLQVLAEAGPDLIAFETI------------------PNKLEAQAYVELLEEENIKIPAWISFNSKDGV 221 (335)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecc------------------CChHHHHHHHHHHHHcCCCCeEEEEEEeCCCC
Confidence 455778888888888775567999998753 24567777777777664 44445555321
Q ss_pred ----HHHHHHHHhhcC--CCCceeceeeCCCCCc--HHHHHHHHHc-CceEEEeccCCCCCCCCCCCCCHHHHHHHHhcC
Q 041428 170 ----LKKLNKLLNFAK--TKPSVCQMEMHPGWRN--DKILEACKKN-GIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLN 240 (322)
Q Consensus 170 ----~~~l~~~~~~~~--~~~~~~q~~~~~~~~~--~~ll~~~~~~-gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~ 240 (322)
...+.++++... ..++++-+++. .+. ..+++..+.. ++.+++|.-- |.. +.. ........++
T Consensus 222 ~l~~G~~~~~~~~~~~~~~~~~~iGiNC~--~p~~~~~~l~~l~~~~~~pl~vyPNa---G~~---~~~-~~~~~~~~~~ 292 (335)
T PLN02489 222 NVVSGDSLLECASIADSCKKVVAVGINCT--PPRFIHGLILSIRKVTSKPIVVYPNS---GET---YDG-EAKEWVESTG 292 (335)
T ss_pred ccCCCCcHHHHHHHHHhcCCceEEEecCC--CHHHHHHHHHHHHhhcCCcEEEECCC---CCC---CCC-ccCcccCCCC
Confidence 122333333221 23456666664 333 5566655554 6777776542 311 110 0000001233
Q ss_pred CC---HHHHHHHHhhhcCCEEecCC--CCHHHHHHhHhccC
Q 041428 241 KS---PGQILLKWGIHRGTSVIPKS--THPDRIKENIKAFG 276 (322)
Q Consensus 241 ~s---~~qlal~~~l~~~~~~i~g~--~~~~~l~~nl~a~~ 276 (322)
.+ .++.+.+|.- .|..+|=|+ ++|+|+++..+.++
T Consensus 293 ~~~~~~~~~~~~~~~-~Ga~iIGGCCgt~P~hI~al~~~l~ 332 (335)
T PLN02489 293 VSDEDFVSYVNKWRD-AGASLIGGCCRTTPNTIRAISKALS 332 (335)
T ss_pred CCHHHHHHHHHHHHH-CCCcEEeeCCCCCHHHHHHHHHHHh
Confidence 44 4577778864 466555555 89999988877654
No 37
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=68.52 E-value=29 Score=35.37 Aligned_cols=146 Identities=18% Similarity=0.157 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHcCCCeEecCCCcCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCCccc
Q 041428 37 EAFKSVFTAIVEGGYRHIDTAKQYGVQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQLDYLD 116 (322)
Q Consensus 37 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iD 116 (322)
|-+.++.++|-+.|++.+- .|.-+.. +..-| .+-++-|+.-|. +.|-...-++++..+.-+...+|
T Consensus 43 EIaIRvFRa~tEL~~~tvA---iYseqD~-~sMHR------qKADEaY~iGk~----l~PV~AYL~ideii~iak~~~vd 108 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTVA---IYSEQDR-LSMHR------QKADEAYLIGKG----LPPVGAYLAIDEIISIAKKHNVD 108 (1176)
T ss_pred cchhHHHHHHhhhcceEEE---EEeccch-hhhhh------hccccceecccC----CCchhhhhhHHHHHHHHHHcCCC
Confidence 4567899999999998874 5642222 22222 257888999997 34445555566655555555566
Q ss_pred eeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhh---------cCCCCcee
Q 041428 117 LYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNF---------AKTKPSVC 187 (322)
Q Consensus 117 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~---------~~~~~~~~ 187 (322)
.+ | |..-. ..|--+.-+.+++. -|++||-| ++.++.+=+. +++ -++
T Consensus 109 av--H-PGYGF----------------LSErsdFA~av~~A-Gi~fiGPs---peVi~~mGDKv~AR~~Ai~agV--pvV 163 (1176)
T KOG0369|consen 109 AV--H-PGYGF----------------LSERSDFAQAVQDA-GIRFIGPS---PEVIDSMGDKVAARAIAIEAGV--PVV 163 (1176)
T ss_pred ee--c-CCccc----------------cccchHHHHHHHhc-CceEeCCC---HHHHHHhhhHHHHHHHHHHcCC--Ccc
Confidence 63 4 22210 11222233444455 57899977 4444433221 122 122
Q ss_pred ceeeCCCCCcHHHHHHHHHcCceEEEeccCCCCC
Q 041428 188 QMEMHPGWRNDKILEACKKNGIHVTAYSPLGSQG 221 (322)
Q Consensus 188 q~~~~~~~~~~~ll~~~~~~gi~via~~pl~~~G 221 (322)
----.+...-.+.+++|++.|.+||.-..++++|
T Consensus 164 PGTpgPitt~~EA~eF~k~yG~PvI~KAAyGGGG 197 (1176)
T KOG0369|consen 164 PGTPGPITTVEEALEFVKEYGLPVIIKAAYGGGG 197 (1176)
T ss_pred CCCCCCcccHHHHHHHHHhcCCcEEEeecccCCC
Confidence 2222233333889999999999999999998856
No 38
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=67.90 E-value=34 Score=31.14 Aligned_cols=107 Identities=14% Similarity=0.105 Sum_probs=71.0
Q ss_pred CCccEEEecCCCHHHHHHHHhhcCCCCc----eeceeeCCCCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHH
Q 041428 158 GLVRDVGVCNFTLKKLNKLLNFAKTKPS----VCQMEMHPGWRNDKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVE 233 (322)
Q Consensus 158 Gkir~iGvs~~~~~~l~~~~~~~~~~~~----~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~ 233 (322)
.++-.+-=++.+.+.+.++.+...-++. .+.+-+--..++..+.+++++.++-++.-+.- --+..+|.
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~--------SsNT~rL~ 228 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKH--------SSNTQKLV 228 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCC--------CccHHHHH
Confidence 5555555567777777766665432211 11111112223477889999888887763332 22457899
Q ss_pred HHHHhcCC------CHHHHHHHHhhhcC-CEEecCCCCHHHHHHhH
Q 041428 234 RIAKKLNK------SPGQILLKWGIHRG-TSVIPKSTHPDRIKENI 272 (322)
Q Consensus 234 ~la~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~~nl 272 (322)
++|.+.+. ++.++-..|+.... +.+..|+|+|+.+-+.+
T Consensus 229 eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 229 KICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 99999874 67899999998766 78889999999886664
No 39
>PRK07094 biotin synthase; Provisional
Probab=66.94 E-value=92 Score=28.60 Aligned_cols=121 Identities=14% Similarity=0.103 Sum_probs=71.8
Q ss_pred ccHHHHHHHHHHHHHcCCccEEEecC-----CCHHHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEEecc
Q 041428 142 FDMEGVWREMEKLVKDGLVRDVGVCN-----FTLKKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSP 216 (322)
Q Consensus 142 ~~~~~~~~~L~~l~~~Gkir~iGvs~-----~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~p 216 (322)
.+.+++.+.++.+++.| ++.+.+++ ++.+.+.++++.....+. +.+.+++.....+.+...++.|+..+..+.
T Consensus 70 ls~eei~~~~~~~~~~g-~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~-l~i~~~~g~~~~e~l~~Lk~aG~~~v~~gl 147 (323)
T PRK07094 70 LSPEEILECAKKAYELG-YRTIVLQSGEDPYYTDEKIADIIKEIKKELD-VAITLSLGERSYEEYKAWKEAGADRYLLRH 147 (323)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEecCCCCCCCHHHHHHHHHHHHccCC-ceEEEecCCCCHHHHHHHHHcCCCEEEecc
Confidence 35788889898888876 56776652 245666666654332121 234455555567888999999988776433
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhcCCCHHHH--HHHHhhhcC----CEEecCC--CCHHHHHHhHhc
Q 041428 217 LGSQGAGRDLIHDPTVERIAKKLNKSPGQI--LLKWGIHRG----TSVIPKS--THPDRIKENIKA 274 (322)
Q Consensus 217 l~~~G~l~~~~~~~~l~~la~~~~~s~~ql--al~~~l~~~----~~~i~g~--~~~~~l~~nl~a 274 (322)
= -...+.++.+.. +.+..+. +++++...| ...++|. .+.+++.+.+..
T Consensus 148 E--------s~~~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~ 203 (323)
T PRK07094 148 E--------TADKELYAKLHP--GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILF 203 (323)
T ss_pred c--------cCCHHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHH
Confidence 2 123344455543 3344443 466666665 4556773 577777666543
No 40
>PRK08392 hypothetical protein; Provisional
Probab=66.92 E-value=84 Score=27.10 Aligned_cols=183 Identities=14% Similarity=0.187 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCCCeEecCCCcC--CHHHHHHHHHHHHhcCCCCCcE--EEEecCCCCCCChHHHHHHHHHHHHHhCCC
Q 041428 38 AFKSVFTAIVEGGYRHIDTAKQYG--VQENIGLALKEAMQTGIQRKDL--FVTSKLWCADLSPDRVRSALNNTLQELQLD 113 (322)
Q Consensus 38 ~~~~~l~~Al~~Gi~~~DTA~~Yg--~e~~lG~~l~~~~~~~~~R~~~--~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d 113 (322)
...+.+++|.+.|++.|=.+++.- ....+...++...+.. .+.++ .+..-+. ..++. ....+..++ ..|
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~-~~~~i~il~GiE~~---~~~~~-~~~~~~~~~--~~D 87 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWG-EESEIVVLAGIEAN---ITPNG-VDITDDFAK--KLD 87 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHh-hccCceEEEeEEee---ecCCc-chhHHHHHh--hCC
Confidence 356899999999999987777653 1122333332221111 11223 3222221 11111 122333344 245
Q ss_pred ccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCC--------CHHHHHHHHhhcCCCCc
Q 041428 114 YLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNF--------TLKKLNKLLNFAKTKPS 185 (322)
Q Consensus 114 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~--------~~~~l~~~~~~~~~~~~ 185 (322)
++ +.-+|.... . ......++.+.++.+.|.+.-+|=-.. ..+.++++++...-.=.
T Consensus 88 ~v-I~SvH~~~~--~-------------~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~ 151 (215)
T PRK08392 88 YV-IASVHEWFG--R-------------PEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGK 151 (215)
T ss_pred EE-EEEeecCcC--C-------------cHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCC
Confidence 44 556785311 1 124677888888889998666653211 12344444444322112
Q ss_pred eeceeeCCCCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHH
Q 041428 186 VCQMEMHPGWRNDKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQI 246 (322)
Q Consensus 186 ~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~ql 246 (322)
++.++.....+...+++.|++.|+.++.-|--.... .+-..+...+++++.|.++.++
T Consensus 152 ~lEiNt~~~~p~~~~l~~~~~~G~~~~igSDAH~~~---~vg~~~~a~~~~~~~g~~~~~~ 209 (215)
T PRK08392 152 AFEISSRYRVPDLEFIRECIKRGIKLTFASDAHRPE---DVGNVSWSLKVFKKAGGKKEDL 209 (215)
T ss_pred EEEEeCCCCCCCHHHHHHHHHcCCEEEEeCCCCChH---HCCcHHHHHHHHHHcCCCHHHe
Confidence 333333223345789999999998865533322200 1111256677788888777653
No 41
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=66.74 E-value=51 Score=29.63 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=57.7
Q ss_pred CCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCC---
Q 041428 93 DLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFT--- 169 (322)
Q Consensus 93 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~--- 169 (322)
.++.+ -+..+-+.|.++|+++|.+=+.........+ .. .....+.++.+.++.+ +..+..+++...
T Consensus 16 ~f~~~-~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~--------~~-~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~ 84 (266)
T cd07944 16 DFGDE-FVKAIYRALAAAGIDYVEIGYRSSPEKEFKG--------KS-AFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDD 84 (266)
T ss_pred cCCHH-HHHHHHHHHHHCCCCEEEeecCCCCccccCC--------Cc-cCCCHHHHHHHHhhhc-cCCEEEEEECCCCCC
Confidence 34443 4455666799999999998764432211100 00 0122566666666553 346666666554
Q ss_pred HHHHHHHHhhcCCCCceeceee--CCCCCcHHHHHHHHHcCceEEEe
Q 041428 170 LKKLNKLLNFAKTKPSVCQMEM--HPGWRNDKILEACKKNGIHVTAY 214 (322)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~q~~~--~~~~~~~~ll~~~~~~gi~via~ 214 (322)
.+.++.+.+. .++.+.+.+ +.+..-.+.+++++++|+.|...
T Consensus 85 ~~~l~~a~~~---gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 85 IDLLEPASGS---VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred HHHHHHHhcC---CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 3444443322 224444433 22222267888999999876654
No 42
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=66.45 E-value=38 Score=31.09 Aligned_cols=107 Identities=10% Similarity=0.117 Sum_probs=70.4
Q ss_pred CCccEEEecCCCHHHHHHHHhhcCCCCceece-eeC-C----CCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHH
Q 041428 158 GLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQM-EMH-P----GWRNDKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPT 231 (322)
Q Consensus 158 Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~-~~~-~----~~~~~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~ 231 (322)
.++-.+-=++.+.+.++++.+...-++.-+.+ .+| + ..|+..+.+++++.++-++.-+.-. -.-.+
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~S--------sNT~k 227 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNS--------SNSNR 227 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCC--------ccHHH
Confidence 55656666677777777666654322111111 111 1 1233778899998888777633332 24578
Q ss_pred HHHHHHhcCC------CHHHHHHHHhhhcC-CEEecCCCCHHHHHHhH
Q 041428 232 VERIAKKLNK------SPGQILLKWGIHRG-TSVIPKSTHPDRIKENI 272 (322)
Q Consensus 232 l~~la~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~~nl 272 (322)
|.++|++.+. +..++-..|+.... +.+..|+|+|+.+.+.+
T Consensus 228 L~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 228 LREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 9999999873 67899999997665 78889999999876654
No 43
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=65.13 E-value=1.1e+02 Score=27.91 Aligned_cols=214 Identities=14% Similarity=0.092 Sum_probs=115.0
Q ss_pred hhHHHHHHHHHHHcCCCeEecCCCcC------CHHHHHHHHHHHHh----------cCCCCCcEEEEecCCC--------
Q 041428 36 DEAFKSVFTAIVEGGYRHIDTAKQYG------VQENIGLALKEAMQ----------TGIQRKDLFVTSKLWC-------- 91 (322)
Q Consensus 36 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg------~e~~lG~~l~~~~~----------~~~~R~~~~i~tK~~~-------- 91 (322)
++.++++-...+++|-+.++|+ .|. +|++-.+-++.+++ +..-.+...|+--+++
T Consensus 42 peiv~~vh~df~~aGa~ii~T~-TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~E 120 (300)
T COG2040 42 PEIVRNVHADFLRAGADIITTA-TYQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALADE 120 (300)
T ss_pred HHHHHHHHHHHHHhcCcEEeeh-hhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcChh
Confidence 5566677777889999999886 564 22221222222111 0112333344444422
Q ss_pred ----CCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecC
Q 041428 92 ----ADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCN 167 (322)
Q Consensus 92 ----~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~ 167 (322)
...+.+.+.+-.+.-++.|.-.-+|++........ ...+.+.+.+++. +|=-.|+++-
T Consensus 121 y~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i---------------~Ea~Aiv~l~~~~---s~p~wISfT~ 182 (300)
T COG2040 121 YRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNI---------------TEAEAIVQLVQEF---SKPAWISFTL 182 (300)
T ss_pred hcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCCh---------------HHHHHHHHHHHHh---CCceEEEEEe
Confidence 23345555555566667777667999987653221 1234555566655 8888899987
Q ss_pred CC------HHHHHHHHhhcCCC--CceeceeeCCCCCcHHHHHHH--HHcCceEEEeccCCCCCCCCCCCCCHH--HHHH
Q 041428 168 FT------LKKLNKLLNFAKTK--PSVCQMEMHPGWRNDKILEAC--KKNGIHVTAYSPLGSQGAGRDLIHDPT--VERI 235 (322)
Q Consensus 168 ~~------~~~l~~~~~~~~~~--~~~~q~~~~~~~~~~~ll~~~--~~~gi~via~~pl~~~G~l~~~~~~~~--l~~l 235 (322)
.+ ...+.++.....-. ...+.+++..+++-..+++.. +..|+++++|-- + | +.++... +..
T Consensus 183 ~d~~~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p~~~~a~i~~l~~~~~~~piivYPN--S-G---e~~d~~~k~w~~- 255 (300)
T COG2040 183 NDDTRLRDGTPLSEAAAILAGLPNIAALGVNCCHPDHIPAAIEELSKLLTGKPIIVYPN--S-G---EQYDPAGKTWHG- 255 (300)
T ss_pred CCCCccCCCccHHHHHHHHhcCcchhheeeccCChhhhHHHHHHHHhcCCCCceEEcCC--c-c---cccCcCCCcCCC-
Confidence 73 23455555543322 344444444444447788887 445899999866 3 3 2222111 100
Q ss_pred HHhcCCCHHHHHHHHhhhcCCEEecCC--CCHHHHHHhHhccC
Q 041428 236 AKKLNKSPGQILLKWGIHRGTSVIPKS--THPDRIKENIKAFG 276 (322)
Q Consensus 236 a~~~~~s~~qlal~~~l~~~~~~i~g~--~~~~~l~~nl~a~~ 276 (322)
-...--+-.+++..|+-. |..+|=|+ +++.|+.+.-++++
T Consensus 256 p~~~~~~~~~~a~~w~~~-GA~iiGGCCrt~p~~I~ei~~~~~ 297 (300)
T COG2040 256 PALSADSYSTLAKSWVEA-GARIIGGCCRTGPAHIAEIAKALK 297 (300)
T ss_pred CCCchhHHHHHHHHHHhc-ccceeeeccCCChHHHHHHHHHHh
Confidence 000001235667777664 34444444 78888888766653
No 44
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=64.95 E-value=81 Score=29.31 Aligned_cols=117 Identities=21% Similarity=0.177 Sum_probs=68.3
Q ss_pred HHHHHhCCCccceeEeec-CCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccE-EEecCC---CHHHHHHHHhh
Q 041428 105 NTLQELQLDYLDLYLIHW-PFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRD-VGVCNF---TLKKLNKLLNF 179 (322)
Q Consensus 105 ~SL~~Lg~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~-iGvs~~---~~~~l~~~~~~ 179 (322)
+.-+.+|.|+||+-+.-. |+.. +...++....++...+.=.+=- |..|.. +++.+++.++.
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~--------------d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~ 148 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGK--------------DKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEA 148 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccc--------------cchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHH
Confidence 444678888888764321 2111 0123444445555444333333 555533 78999999998
Q ss_pred cCCC-CceeceeeCCCCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHH
Q 041428 180 AKTK-PSVCQMEMHPGWRNDKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQ 245 (322)
Q Consensus 180 ~~~~-~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~q 245 (322)
++-+ +.++-+... +-..+.+.|+++|..|++.+|..- -..+.+...+.++|+++.+
T Consensus 149 ~~g~~pLInSat~e---n~~~i~~lA~~y~~~Vva~s~~Dl-------n~ak~L~~~l~~~Gi~~ed 205 (319)
T PRK04452 149 AEGERCLLGSAEED---NYKKIAAAAMAYGHAVIAWSPLDI-------NLAKQLNILLTELGVPRER 205 (319)
T ss_pred hCCCCCEEEECCHH---HHHHHHHHHHHhCCeEEEEcHHHH-------HHHHHHHHHHHHcCCCHHH
Confidence 7643 444433321 127799999999999999886531 1224555556667775554
No 45
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=64.20 E-value=34 Score=31.12 Aligned_cols=119 Identities=14% Similarity=0.151 Sum_probs=78.8
Q ss_pred HHHHHHHHHH--HcCCccEEEecCCCHHHHHHHHhhcCCCCceece------eeCCCCCcHHHHHHHHHcCceEEEeccC
Q 041428 146 GVWREMEKLV--KDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQM------EMHPGWRNDKILEACKKNGIHVTAYSPL 217 (322)
Q Consensus 146 ~~~~~L~~l~--~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~------~~~~~~~~~~ll~~~~~~gi~via~~pl 217 (322)
+..+.+++|. ...++-++-=++-+.+...++.+....++-.+|. -|---+++..+.+++.+.++-++.-++-
T Consensus 144 e~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~n 223 (294)
T COG0761 144 ESVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKN 223 (294)
T ss_pred ecHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCC
Confidence 3444445553 3335555555556666666666654432222222 2222334477888899988888876655
Q ss_pred CCCCCCCCCCCCHHHHHHHHhcCC------CHHHHHHHHhhhcC-CEEecCCCCHHHHHHhH
Q 041428 218 GSQGAGRDLIHDPTVERIAKKLNK------SPGQILLKWGIHRG-TSVIPKSTHPDRIKENI 272 (322)
Q Consensus 218 ~~~G~l~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~~nl 272 (322)
.+ ...+|.++|++.|. ++.++-..|+.... +.+-.|+|+|+.+.+++
T Consensus 224 SS--------Ns~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 224 SS--------NSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEV 277 (294)
T ss_pred Cc--------cHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHH
Confidence 44 45799999999986 57888899998866 77789999999998875
No 46
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=63.58 E-value=4.5 Score=39.22 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=44.8
Q ss_pred cHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhcC---CEEecC
Q 041428 197 NDKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQILLKWGIHRG---TSVIPK 261 (322)
Q Consensus 197 ~~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~---~~~i~g 261 (322)
..+-+.+++++||+++.+.-+.+ ++++....-.++-.||+|.+.-.|+|+++.. .+.++|
T Consensus 79 ~NpEi~~A~e~~ipi~~r~e~La-----elm~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 79 DNPEIVAALERGIPVISRAEMLA-----ELMRFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred CCHHHHHHHHcCCCeEcHHHHHH-----HHHhCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 35678888888999888776654 3444444455677899999999999999874 667776
No 47
>PRK07945 hypothetical protein; Provisional
Probab=61.95 E-value=1.4e+02 Score=27.89 Aligned_cols=180 Identities=13% Similarity=0.107 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHcCCCeEecCCCcC--------CHHHHHHHHHHHHhcC-CCCC-cEEEEecCC-CCCCChHHHHHHHHH
Q 041428 37 EAFKSVFTAIVEGGYRHIDTAKQYG--------VQENIGLALKEAMQTG-IQRK-DLFVTSKLW-CADLSPDRVRSALNN 105 (322)
Q Consensus 37 ~~~~~~l~~Al~~Gi~~~DTA~~Yg--------~e~~lG~~l~~~~~~~-~~R~-~~~i~tK~~-~~~~~~~~i~~~~~~ 105 (322)
....+.+.+|.+.|+..+=.+++.. +...+-..+....+.. .-++ +|++..-+. ..+...+.. ++
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~d~~~~g~~~~~----~~ 186 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEVDILDDGSLDQE----PE 186 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEecccCCCCcchh----HH
Confidence 4567999999999999887776632 1222222222210000 0122 222222221 112222222 33
Q ss_pred HHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecC---------------CCH
Q 041428 106 TLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCN---------------FTL 170 (322)
Q Consensus 106 SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~---------------~~~ 170 (322)
.|+. .||+ +.-+|+... .+..+..+.|.+..+.+++.-+|=-+ +..
T Consensus 187 ~l~~--~D~v-IgSvH~~~~----------------~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~ 247 (335)
T PRK07945 187 LLDR--LDVV-VASVHSKLR----------------MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDA 247 (335)
T ss_pred HHHh--CCEE-EEEeecCCC----------------CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCH
Confidence 3333 4555 566787532 12355678888888888877777321 111
Q ss_pred HHHHHHHhhcCCCCceeceeeCCCC--CcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHH
Q 041428 171 KKLNKLLNFAKTKPSVCQMEMHPGW--RNDKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQ 245 (322)
Q Consensus 171 ~~l~~~~~~~~~~~~~~q~~~~~~~--~~~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~q 245 (322)
+.+-+++...+ ..+.++.+.+. +...+++.|++.|+.++.-|--.... .+-.......++.+.|.++.+
T Consensus 248 ~~i~~a~~e~g---~~lEINt~~~r~~P~~~il~~a~e~G~~vtigSDAH~p~---~v~~~~~~~~~a~~~g~~~~~ 318 (335)
T PRK07945 248 EAVFAACREHG---TAVEINSRPERRDPPTRLLRLALDAGCLFSIDTDAHAPG---QLDWLGYGCERAEEAGVPADR 318 (335)
T ss_pred HHHHHHHHHhC---CEEEEeCCCCCCCChHHHHHHHHHcCCeEEecCCCCChh---hcchHHHHHHHHHHcCCCHHH
Confidence 22222222222 23444443332 33678999999998864433222200 111112344555555655544
No 48
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=61.12 E-value=1e+02 Score=30.67 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=78.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCcc
Q 041428 60 YGVQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEV 139 (322)
Q Consensus 60 Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~ 139 (322)
+|+++.+-++|++..+. .+++-++|.|-+ .++-+-..++...+.++.+.++++.++.|.......
T Consensus 67 ~G~~~~L~~aI~~~~~~-~~P~~I~V~sTC-----~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~--------- 131 (511)
T TIGR01278 67 RGSQTRLVDTVRRVDDR-FKPDLIVVTPSC-----TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKEN--------- 131 (511)
T ss_pred cchHHHHHHHHHHHHHh-cCCCEEEEeCCC-----hHHHhccCHHHHHHHhccCCCcEEEecCCCcccchh---------
Confidence 67888888888876432 234445666655 344555555566666665568899999886642200
Q ss_pred ccccHHHHHHHHHH-H----------HHcCCccEEEecCC------CHHHHHHHHhhcCCCCcee--------------c
Q 041428 140 LEFDMEGVWREMEK-L----------VKDGLVRDVGVCNF------TLKKLNKLLNFAKTKPSVC--------------Q 188 (322)
Q Consensus 140 ~~~~~~~~~~~L~~-l----------~~~Gkir~iGvs~~------~~~~l~~~~~~~~~~~~~~--------------q 188 (322)
.....+++++.+ + .+.++|--||.++. +...+.++++..++.+.++ .
T Consensus 132 --~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~ 209 (511)
T TIGR01278 132 --QAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPA 209 (511)
T ss_pred --HHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhccc
Confidence 111222222221 1 13456888898763 4567788888776543221 1
Q ss_pred eeeCCCC-Cc--HHHHHHHH-HcCceEEEeccCC
Q 041428 189 MEMHPGW-RN--DKILEACK-KNGIHVTAYSPLG 218 (322)
Q Consensus 189 ~~~~~~~-~~--~~ll~~~~-~~gi~via~~pl~ 218 (322)
..+|+.. +. ..+.++.+ +.|++.+...|+|
T Consensus 210 A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 210 AWLNICPYREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred CcEEEEechHHHHHHHHHHHHHhCCCcccccccC
Confidence 1122221 11 22344443 4499998777875
No 49
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=60.70 E-value=1.4e+02 Score=27.56 Aligned_cols=146 Identities=12% Similarity=0.061 Sum_probs=85.3
Q ss_pred cceeecccCChhHHHHHHHHHHHcCCCeEec---CC-----CcC-------CHHHHHHHHHHHHhcCCCCCcEEEEecCC
Q 041428 26 AVGLGTWKSGDEAFKSVFTAIVEGGYRHIDT---AK-----QYG-------VQENIGLALKEAMQTGIQRKDLFVTSKLW 90 (322)
Q Consensus 26 ~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DT---A~-----~Yg-------~e~~lG~~l~~~~~~~~~R~~~~i~tK~~ 90 (322)
++++-.++.+.++..++...+.+.|+..||- .+ .|| .-+.+.+.++...+ . -..++-|+.|+.
T Consensus 64 p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~-~-~~~~~pVsvKiR 141 (312)
T PRK10550 64 LVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMRE-A-VPAHLPVTVKVR 141 (312)
T ss_pred cEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHH-h-cCCCcceEEEEE
Confidence 3444445567777777888888999999992 11 233 23445555554311 1 122477888873
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCC-C
Q 041428 91 CADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNF-T 169 (322)
Q Consensus 91 ~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-~ 169 (322)
....+.+. ...+-+.++..| +|.+.+|.-..... + ..+ .--|+...++++.-.|--||..+. +
T Consensus 142 ~g~~~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~--y---------~g~-~~~~~~i~~ik~~~~iPVi~nGdI~t 205 (312)
T PRK10550 142 LGWDSGER-KFEIADAVQQAG---ATELVVHGRTKEDG--Y---------RAE-HINWQAIGEIRQRLTIPVIANGEIWD 205 (312)
T ss_pred CCCCCchH-HHHHHHHHHhcC---CCEEEECCCCCccC--C---------CCC-cccHHHHHHHHhhcCCcEEEeCCcCC
Confidence 21111122 235555566666 67778886432211 0 000 012677888888777888998887 6
Q ss_pred HHHHHHHHhhcCCCCceeceee
Q 041428 170 LKKLNKLLNFAKTKPSVCQMEM 191 (322)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~q~~~ 191 (322)
++...++++..+. +.+++.=
T Consensus 206 ~~da~~~l~~~g~--DgVmiGR 225 (312)
T PRK10550 206 WQSAQQCMAITGC--DAVMIGR 225 (312)
T ss_pred HHHHHHHHhccCC--CEEEEcH
Confidence 8888888876543 6666643
No 50
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=60.10 E-value=1.4e+02 Score=27.45 Aligned_cols=163 Identities=15% Similarity=0.134 Sum_probs=83.0
Q ss_pred CChhHHHHHHHHHHHcCCCeEecCCCcC-CHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCC
Q 041428 34 SGDEAFKSVFTAIVEGGYRHIDTAKQYG-VQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQL 112 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~ 112 (322)
.+.++..++++.+.+.|++.|.-...-. ...-+-+.++...+ ...-.++.|+|... .+.+ .-..|...|+
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~i~~-~~~~~~i~itTNG~-------ll~~-~~~~L~~agl 119 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAALAA-LPGIRDLALTTNGY-------LLAR-RAAALKDAGL 119 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHHHHh-cCCCceEEEEcCch-------hHHH-HHHHHHHcCC
Confidence 4567888999999999998887543110 11123344443211 11124677777752 1222 2233455565
Q ss_pred CccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCC----ccEEEecCCCHHHHHHHHhhcC-CCCcee
Q 041428 113 DYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGL----VRDVGVCNFTLKKLNKLLNFAK-TKPSVC 187 (322)
Q Consensus 113 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk----ir~iGvs~~~~~~l~~~~~~~~-~~~~~~ 187 (322)
+.|- +-||..++.... .... ....+.++++++.+++.|. +..+.+-..+.+.+.++++... ....+.
T Consensus 120 ~~i~-ISlds~~~e~~~---~i~~----~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v~ 191 (331)
T PRK00164 120 DRVN-VSLDSLDPERFK---AITG----RDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQLR 191 (331)
T ss_pred CEEE-EEeccCCHHHhc---cCCC----CCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeEE
Confidence 5442 334544331100 0000 1346899999999999885 2344444556566666666543 222333
Q ss_pred ceeeCCCCC-----------cHHHHHHHHHcCceEEE
Q 041428 188 QMEMHPGWR-----------NDKILEACKKNGIHVTA 213 (322)
Q Consensus 188 q~~~~~~~~-----------~~~ll~~~~~~gi~via 213 (322)
-++|.+... ..++++..+++|+.+..
T Consensus 192 ~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 192 FIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred EEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 333333221 14577777777654433
No 51
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=59.97 E-value=1.1e+02 Score=26.26 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=74.1
Q ss_pred CChhHHHHHHHHHHHcCCCeEecC----------CCcC-----CHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHH
Q 041428 34 SGDEAFKSVFTAIVEGGYRHIDTA----------KQYG-----VQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDR 98 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi~~~DTA----------~~Yg-----~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~ 98 (322)
.+.++..+..+.+.++|+..||-= ..|| .-+.+-+.++...+ ... +-|..|+.......+.
T Consensus 64 ~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~-~~~---~~v~vk~r~~~~~~~~ 139 (231)
T cd02801 64 SDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVRE-AVP---IPVTVKIRLGWDDEEE 139 (231)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHH-hcC---CCEEEEEeeccCCchH
Confidence 456777888888889999999842 3466 23444455544311 111 4466666211111112
Q ss_pred HHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCC-CHHHHHHHH
Q 041428 99 VRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNF-TLKKLNKLL 177 (322)
Q Consensus 99 i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~ 177 (322)
.. .+-+.|..+| +|.+.+|....... ......|+.+.++++.-.+--++..+. +.+.+.+++
T Consensus 140 ~~-~~~~~l~~~G---vd~i~v~~~~~~~~-------------~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l 202 (231)
T cd02801 140 TL-ELAKALEDAG---ASALTVHGRTREQR-------------YSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCL 202 (231)
T ss_pred HH-HHHHHHHHhC---CCEEEECCCCHHHc-------------CCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHH
Confidence 22 2223345556 56667776432210 000123566677777777777777776 578888887
Q ss_pred hhcCCCCceeceee
Q 041428 178 NFAKTKPSVCQMEM 191 (322)
Q Consensus 178 ~~~~~~~~~~q~~~ 191 (322)
+.... +.+++.-
T Consensus 203 ~~~ga--d~V~igr 214 (231)
T cd02801 203 EQTGV--DGVMIGR 214 (231)
T ss_pred HhcCC--CEEEEcH
Confidence 76443 5555543
No 52
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=59.05 E-value=1.6e+02 Score=28.85 Aligned_cols=115 Identities=9% Similarity=0.035 Sum_probs=60.6
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCC----ccceeEeecCCCCCCCCCCC
Q 041428 58 KQYGVQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQLD----YLDLYLIHWPFRLKEGASRP 133 (322)
Q Consensus 58 ~~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d----~iDl~~lH~p~~~~~~~~~~ 133 (322)
-.||.++.+-++|++..+...+.+=++|.|-+.. ..--+.|..-+++.-+++.-+ .+.++.+|.|......
T Consensus 69 vVfGG~~kL~~aI~~~~~~~~~p~~I~V~ttC~~-eiIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs~---- 143 (457)
T TIGR02932 69 AVFGGAKRIEEGVLTLARRYPNLRVIPIITTCST-ETIGDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGSQ---- 143 (457)
T ss_pred eEECcHHHHHHHHHHHHHhCCCCCEEEEECCchH-HhhcCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCcH----
Confidence 4578888999999886543212345677776521 111233333333322222111 4778999988775321
Q ss_pred CCCCccccccHHHHHHHHHHHH------HcCCccEEEecCC--CHHHHHHHHhhcCCCC
Q 041428 134 PKDGEVLEFDMEGVWREMEKLV------KDGLVRDVGVCNF--TLKKLNKLLNFAKTKP 184 (322)
Q Consensus 134 ~~~~~~~~~~~~~~~~~L~~l~------~~Gkir~iGvs~~--~~~~l~~~~~~~~~~~ 184 (322)
..-...++++|.+.. .+++|--||-.+. +.+.+.++++..++++
T Consensus 144 -------~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~v 195 (457)
T TIGR02932 144 -------VTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDA 195 (457)
T ss_pred -------HHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCE
Confidence 012334444443222 2355766753322 4557788888776643
No 53
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=58.97 E-value=62 Score=28.57 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=63.4
Q ss_pred CChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcC-CccEEEecCCCHHH
Q 041428 94 LSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDG-LVRDVGVCNFTLKK 172 (322)
Q Consensus 94 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-kir~iGvs~~~~~~ 172 (322)
++.+.. ..+-..|..+|+++|.+-..-.+... ......++.++.+++.+ .++...++.-....
T Consensus 16 ~s~e~~-~~i~~~L~~~GV~~IEvg~~~~~~~~---------------p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~ 79 (265)
T cd03174 16 FSTEDK-LEIAEALDEAGVDSIEVGSGASPKAV---------------PQMEDDWEVLRAIRKLVPNVKLQALVRNREKG 79 (265)
T ss_pred CCHHHH-HHHHHHHHHcCCCEEEeccCcCcccc---------------ccCCCHHHHHHHHHhccCCcEEEEEccCchhh
Confidence 343343 44445578889888887653322111 01245677888888888 57776777665666
Q ss_pred HHHHHhhcCCCCceeceeeCCCC--------C--------cHHHHHHHHHcCceEEEec
Q 041428 173 LNKLLNFAKTKPSVCQMEMHPGW--------R--------NDKILEACKKNGIHVTAYS 215 (322)
Q Consensus 173 l~~~~~~~~~~~~~~q~~~~~~~--------~--------~~~ll~~~~~~gi~via~~ 215 (322)
++.+.+.+ .+.+++.+..-+ + -.+.+++++++|+.+...-
T Consensus 80 i~~a~~~g---~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 80 IERALEAG---VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred HHHHHhCC---cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 77776653 355555554331 1 1568888999999877655
No 54
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=58.47 E-value=1.5e+02 Score=27.24 Aligned_cols=145 Identities=14% Similarity=0.114 Sum_probs=82.7
Q ss_pred ceeecccCChhHHHHHHHHHHHcCCCeEecCC---------Cc-CC-----HHHHHHHHHHHHhcCCCCCcEEEEecCCC
Q 041428 27 VGLGTWKSGDEAFKSVFTAIVEGGYRHIDTAK---------QY-GV-----QENIGLALKEAMQTGIQRKDLFVTSKLWC 91 (322)
Q Consensus 27 lglG~~~~~~~~~~~~l~~Al~~Gi~~~DTA~---------~Y-g~-----e~~lG~~l~~~~~~~~~R~~~~i~tK~~~ 91 (322)
++.-.++.+.++..++.+.+.+.|+..||.-- .| |+ .+.+.+.++.. .. +-.+-|+.|+..
T Consensus 65 ~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~v-r~---~~~~pv~vKir~ 140 (319)
T TIGR00737 65 ISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAV-VD---AVDIPVTVKIRI 140 (319)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHH-Hh---hcCCCEEEEEEc
Confidence 44444556778888888888899999998521 23 32 24455555543 11 113567788621
Q ss_pred -CCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCC-C
Q 041428 92 -ADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNF-T 169 (322)
Q Consensus 92 -~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-~ 169 (322)
.+.....+ ..+-+.|+..| +|.+.+|....... ......|+.+.++++.=.+--||.... +
T Consensus 141 g~~~~~~~~-~~~a~~l~~~G---~d~i~vh~r~~~~~-------------~~~~~~~~~i~~i~~~~~ipvi~nGgI~~ 203 (319)
T TIGR00737 141 GWDDAHINA-VEAARIAEDAG---AQAVTLHGRTRAQG-------------YSGEANWDIIARVKQAVRIPVIGNGDIFS 203 (319)
T ss_pred ccCCCcchH-HHHHHHHHHhC---CCEEEEEccccccc-------------CCCchhHHHHHHHHHcCCCcEEEeCCCCC
Confidence 11111111 23444566667 46666785332111 011234777788887766888888777 4
Q ss_pred HHHHHHHHhhcCCCCceeceeeCCC
Q 041428 170 LKKLNKLLNFAKTKPSVCQMEMHPG 194 (322)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~q~~~~~~ 194 (322)
++.+.++++.++. +.+++--..+
T Consensus 204 ~~da~~~l~~~ga--d~VmigR~~l 226 (319)
T TIGR00737 204 PEDAKAMLETTGC--DGVMIGRGAL 226 (319)
T ss_pred HHHHHHHHHhhCC--CEEEEChhhh
Confidence 7888888866543 6677754443
No 55
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=58.15 E-value=1.4e+02 Score=26.60 Aligned_cols=151 Identities=16% Similarity=0.162 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHHcCCCeEecCCCcCCHHH--HHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCC
Q 041428 36 DEAFKSVFTAIVEGGYRHIDTAKQYGVQEN--IGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQLD 113 (322)
Q Consensus 36 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~--lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d 113 (322)
.++..+.++.+++.|++.|-.=-.-..++. .=+++++. -.+++.|....+ ..++.+...+-+ +.|+.+
T Consensus 86 ~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~-----~g~~~~l~vDan-~~~~~~~a~~~~-~~l~~~--- 155 (265)
T cd03315 86 PAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREA-----VGDDAELRVDAN-RGWTPKQAIRAL-RALEDL--- 155 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHh-----cCCCCEEEEeCC-CCcCHHHHHHHH-HHHHhc---
Confidence 455566667777888887765321111221 22334432 123444444442 223333322222 233333
Q ss_pred ccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhhcCCCCceeceeeC
Q 041428 114 YLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVR-DVGVCNFTLKKLNKLLNFAKTKPSVCQMEMH 192 (322)
Q Consensus 114 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~ 192 (322)
++.++..|-+. +-++.+.+|++.-.+. ..|=+-++...+.++++.... +++|+...
T Consensus 156 --~i~~iEeP~~~-------------------~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~--d~v~~k~~ 212 (265)
T cd03315 156 --GLDYVEQPLPA-------------------DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAA--DAVNIKTA 212 (265)
T ss_pred --CCCEEECCCCc-------------------ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCC--CEEEEecc
Confidence 44445555321 2345567777766555 334445577888887766443 67777655
Q ss_pred CCCC---cHHHHHHHHHcCceEEEeccCCC
Q 041428 193 PGWR---NDKILEACKKNGIHVTAYSPLGS 219 (322)
Q Consensus 193 ~~~~---~~~ll~~~~~~gi~via~~pl~~ 219 (322)
..-. ...+...|+++|+.++.++.+.+
T Consensus 213 ~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s 242 (265)
T cd03315 213 KTGGLTKAQRVLAVAEALGLPVMVGSMIES 242 (265)
T ss_pred cccCHHHHHHHHHHHHHcCCcEEecCccch
Confidence 4332 26788999999999988766543
No 56
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=57.02 E-value=1.6e+02 Score=27.18 Aligned_cols=140 Identities=14% Similarity=0.118 Sum_probs=80.8
Q ss_pred ccCChhHHHHHHHHHHHcCCCeEec----------CCCcCC-----HHHHHHHHHHHHhcCCCCCcEEEEecCCCC-CCC
Q 041428 32 WKSGDEAFKSVFTAIVEGGYRHIDT----------AKQYGV-----QENIGLALKEAMQTGIQRKDLFVTSKLWCA-DLS 95 (322)
Q Consensus 32 ~~~~~~~~~~~l~~Al~~Gi~~~DT----------A~~Yg~-----e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~-~~~ 95 (322)
++.+.++..++.+.+.+.|+..||. ...+|+ -+.+.+.++.... .. ++-|+.|+... +.+
T Consensus 72 ~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~-a~---d~pv~vKiR~G~~~~ 147 (321)
T PRK10415 72 AGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVN-AV---DVPVTLKIRTGWAPE 147 (321)
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHH-hc---CCceEEEEEccccCC
Confidence 4456677777777788899999993 233442 4445555544311 11 34577777211 111
Q ss_pred hHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCC-CHHHHH
Q 041428 96 PDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNF-TLKKLN 174 (322)
Q Consensus 96 ~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-~~~~l~ 174 (322)
.... ..+-+-++..| +|.+.+|.-...... .-..-|+.+.++++.=.|-=||.... +++.++
T Consensus 148 ~~~~-~~~a~~le~~G---~d~i~vh~rt~~~~~-------------~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~ 210 (321)
T PRK10415 148 HRNC-VEIAQLAEDCG---IQALTIHGRTRACLF-------------NGEAEYDSIRAVKQKVSIPVIANGDITDPLKAR 210 (321)
T ss_pred cchH-HHHHHHHHHhC---CCEEEEecCcccccc-------------CCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHH
Confidence 1111 13333456666 577788864322110 00123677788888777888888877 688888
Q ss_pred HHHhhcCCCCceeceeeCCC
Q 041428 175 KLLNFAKTKPSVCQMEMHPG 194 (322)
Q Consensus 175 ~~~~~~~~~~~~~q~~~~~~ 194 (322)
++++..+. +.+|+.-..+
T Consensus 211 ~~l~~~ga--dgVmiGR~~l 228 (321)
T PRK10415 211 AVLDYTGA--DALMIGRAAQ 228 (321)
T ss_pred HHHhccCC--CEEEEChHhh
Confidence 88876554 6777764443
No 57
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=56.33 E-value=1.5e+02 Score=26.37 Aligned_cols=62 Identities=8% Similarity=-0.015 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCccEEEecCC-CHHHHHHHHhhcCCCCceeceeeCCC---CCcHHHHHHHHHcCceE
Q 041428 148 WREMEKLVKDGLVRDVGVCNF-TLKKLNKLLNFAKTKPSVCQMEMHPG---WRNDKILEACKKNGIHV 211 (322)
Q Consensus 148 ~~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~v 211 (322)
++.+.++++.-.+.-|..... +++.+.++++.+.. +.+.+.--+. ..-.++...|+++|+.+
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~--dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKA--DAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCc--ceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 344555555556666766655 57788888876544 3332221111 12267889999988864
No 58
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=55.73 E-value=1.5e+02 Score=26.34 Aligned_cols=100 Identities=16% Similarity=0.135 Sum_probs=59.1
Q ss_pred HHHHHHcCCccEEEe--cCCCHHHHHHHHhhcCCCCceeceeeCCCCCc--HHHHHHHHHcCceEEEeccCCCCCCCCCC
Q 041428 151 MEKLVKDGLVRDVGV--CNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRN--DKILEACKKNGIHVTAYSPLGSQGAGRDL 226 (322)
Q Consensus 151 L~~l~~~Gkir~iGv--s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~via~~pl~~~G~l~~~ 226 (322)
|.+..++|+. -+|+ ..-++..++.+. ..+.++.++=.+-++++.. ..++..++..|+.++..-|-..
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~-~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~------- 73 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICA-GAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD------- 73 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHH-hcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC-------
Confidence 3444556775 3443 333455555444 4556556666666665444 4577777778888888765432
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHhhhcC--CEEecCCCCHHHHHHhHhccCC
Q 041428 227 IHDPTVERIAKKLNKSPGQILLKWGIHRG--TSVIPKSTHPDRIKENIKAFGW 277 (322)
Q Consensus 227 ~~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~ 277 (322)
+ .-++.++..| .+++|-..+++++++.+++..+
T Consensus 74 ----------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 ----------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred ----------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1 1345566665 5666777777777777766554
No 59
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=55.73 E-value=1.7e+02 Score=28.38 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=58.9
Q ss_pred CCCcCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCC-----ccceeEeecCCCCCCCCC
Q 041428 57 AKQYGVQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQLD-----YLDLYLIHWPFRLKEGAS 131 (322)
Q Consensus 57 A~~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d-----~iDl~~lH~p~~~~~~~~ 131 (322)
.-.||.++.+-++|++..+. .+++-++|.|-+- ++-+-..++...+++.-+ .+.++.++.|......
T Consensus 64 d~V~Gg~~~L~~ai~~~~~~-~~p~~I~v~ttC~-----~~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~-- 135 (435)
T cd01974 64 AAVFGGQNNLIDGLKNAYAV-YKPDMIAVSTTCM-----AEVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSH-- 135 (435)
T ss_pred ceEECcHHHHHHHHHHHHHh-cCCCEEEEeCCch-----HhhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCH--
Confidence 34578888888898876443 2455567777652 233333333333333221 4788888888654220
Q ss_pred CCCCCCccccccHHHHHHHHH-HHHH-------cCCccEEE-ecCC-C-HHHHHHHHhhcCCCC
Q 041428 132 RPPKDGEVLEFDMEGVWREME-KLVK-------DGLVRDVG-VCNF-T-LKKLNKLLNFAKTKP 184 (322)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~L~-~l~~-------~Gkir~iG-vs~~-~-~~~l~~~~~~~~~~~ 184 (322)
......++++|- .+.. .++|--|| ..+. + .+.+.++++..++.+
T Consensus 136 ---------~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~ 190 (435)
T cd01974 136 ---------ITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDY 190 (435)
T ss_pred ---------HHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCE
Confidence 012233444443 2222 23354454 2222 2 578888888877654
No 60
>PRK05414 urocanate hydratase; Provisional
Probab=55.56 E-value=40 Score=33.14 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=93.3
Q ss_pred CCCCcceEEcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCeEe--cCCCc---C-------CHHHHHHHHHHHHhc
Q 041428 9 TNHKAESFKLLSGHTIPAVGLGTWKSGDEAFKSVFTAIVEGGYRHID--TAKQY---G-------VQENIGLALKEAMQT 76 (322)
Q Consensus 9 ~~~~m~~~~l~tg~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~D--TA~~Y---g-------~e~~lG~~l~~~~~~ 76 (322)
+...-|++.+.++..||. |.. -+-.+..-+.|+..+= ||.+| | .-+.+..+-++.+.
T Consensus 94 th~~APRVliaN~~lVp~-----wa~-----~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~- 162 (556)
T PRK05414 94 THPDAPRVLIANSNLVPH-----WAN-----WEHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG- 162 (556)
T ss_pred CCCCCCeEEEEcCccccC-----CCC-----HHHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-
Confidence 333445555566666654 221 2344566677776553 66554 2 34555666666542
Q ss_pred CCCCCcEEEEecCCCCC-CChHHH----------HHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHH
Q 041428 77 GIQRKDLFVTSKLWCAD-LSPDRV----------RSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDME 145 (322)
Q Consensus 77 ~~~R~~~~i~tK~~~~~-~~~~~i----------~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 145 (322)
|--+-++|+++-++... ..|-.+ .-.-.+.-+|+.+.|+|.+. .+.+
T Consensus 163 g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~----------------------~~Ld 220 (556)
T PRK05414 163 GDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVEVDESRIDKRLRTGYLDEKA----------------------DDLD 220 (556)
T ss_pred CCCceeEEEEecCCccccccHHHHHhcCceEEEEEECHHHHHHHHhCCcceeEc----------------------CCHH
Confidence 33466788888774311 111110 01223455788999999863 4578
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCce--eceee
Q 041428 146 GVWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSV--CQMEM 191 (322)
Q Consensus 146 ~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~--~q~~~ 191 (322)
++++..++.+++|+...||+-.--++.++++++.. +.|++ -|...
T Consensus 221 eal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~-i~pDlvtDQTSa 267 (556)
T PRK05414 221 EALALAEEAKAAGEPLSIGLLGNAADVLPELVRRG-IRPDLVTDQTSA 267 (556)
T ss_pred HHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcC-CCCCccCcCccc
Confidence 99999999999999999999999899999999874 44443 35543
No 61
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=55.52 E-value=39 Score=33.10 Aligned_cols=146 Identities=18% Similarity=0.217 Sum_probs=91.3
Q ss_pred CcceEEcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCeEe--cCCCc---C-------CHHHHHHHHHHHHhcCCC
Q 041428 12 KAESFKLLSGHTIPAVGLGTWKSGDEAFKSVFTAIVEGGYRHID--TAKQY---G-------VQENIGLALKEAMQTGIQ 79 (322)
Q Consensus 12 ~m~~~~l~tg~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~D--TA~~Y---g-------~e~~lG~~l~~~~~~~~~ 79 (322)
.-|++.+.++..||. |.. -+-.+..-+.|+..+= ||.+| | .-+.+..+-++.+. +--
T Consensus 88 ~APRVliaNs~lVp~-----wa~-----~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~-~~L 156 (545)
T TIGR01228 88 NAPRVLIANSNLVPH-----WAD-----WEHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFG-GSL 156 (545)
T ss_pred CCCeEEEEcCccccC-----CCC-----HHHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcC-CCC
Confidence 444555555666654 221 2344666677876553 56554 2 34555666666542 224
Q ss_pred CCcEEEEecCCCCC-CChHHHH----------HHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHH
Q 041428 80 RKDLFVTSKLWCAD-LSPDRVR----------SALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVW 148 (322)
Q Consensus 80 R~~~~i~tK~~~~~-~~~~~i~----------~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (322)
+-++|++.-++... ..|-.+. -.-.+.-+|+.+.|+|.+. .++++++
T Consensus 157 ~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~----------------------~~ldeal 214 (545)
T TIGR01228 157 KGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVEVDESRIDKRLETKYCDEQT----------------------DSLDEAL 214 (545)
T ss_pred ceeEEEEeCCCccccccHHHHHHcCceEEEEEECHHHHHHHHhcCcceeEc----------------------CCHHHHH
Confidence 56788887774311 1111110 1223445788899999863 4578999
Q ss_pred HHHHHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCce--eceee
Q 041428 149 REMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSV--CQMEM 191 (322)
Q Consensus 149 ~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~--~q~~~ 191 (322)
+..++.+++|+...||+-.--++.++++++.. +.|++ -|...
T Consensus 215 ~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~-i~pDlvtDQTSa 258 (545)
T TIGR01228 215 ARAEEAKAEGKPISIGLLGNAAEVLPELLKRG-VVPDVVTDQTSA 258 (545)
T ss_pred HHHHHHHHcCCceEEEeeccHHHHHHHHHHcC-CCCCCcCCCCcc
Confidence 99999999999999999999999999999864 44443 35544
No 62
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=55.23 E-value=26 Score=31.89 Aligned_cols=107 Identities=16% Similarity=0.191 Sum_probs=65.3
Q ss_pred CCccEEEecCCCHHHHHHHHhhcCCC-CceeceeeCCCC-----CcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHH
Q 041428 158 GLVRDVGVCNFTLKKLNKLLNFAKTK-PSVCQMEMHPGW-----RNDKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPT 231 (322)
Q Consensus 158 Gkir~iGvs~~~~~~l~~~~~~~~~~-~~~~q~~~~~~~-----~~~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~ 231 (322)
+++-.+.=++++.+.+.++.+...-. +......+|-.+ ++..+.+++++-++-++.-+.-. -...+
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~S--------sNT~k 226 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNS--------SNTRK 226 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT---------HHHHH
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCC--------ccHHH
Confidence 47777777888887777776654311 111111222222 23678888888887776633222 23478
Q ss_pred HHHHHHhcCC------CHHHHHHHHhhhcC-CEEecCCCCHHHHHHhH
Q 041428 232 VERIAKKLNK------SPGQILLKWGIHRG-TSVIPKSTHPDRIKENI 272 (322)
Q Consensus 232 l~~la~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~~nl 272 (322)
|.++|++++. ++.++...|+.... +.+..|+|+|+.+-+.+
T Consensus 227 L~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 227 LAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred HHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 9999999874 67899999999877 88899999999987764
No 63
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=54.79 E-value=42 Score=27.97 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=40.2
Q ss_pred ccHHHHHHHHHHHHHcC-CccEEEecCCC--HHHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEE
Q 041428 142 FDMEGVWREMEKLVKDG-LVRDVGVCNFT--LKKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTA 213 (322)
Q Consensus 142 ~~~~~~~~~L~~l~~~G-kir~iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via 213 (322)
....+++++|.++++.| +|..+|..+.. ...+.+++. . .+.+..|+-...-...+..+++.|+.++.
T Consensus 61 ~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~---~--~i~~~~~~~~~e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 61 ISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLG---V--DIKIYPYDSEEEIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp --HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT------EEEEEEESSHHHHHHHHHHHHHTT--EEE
T ss_pred CCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhC---C--ceEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 34678999999988766 45555555554 345555543 2 55555554322226788899999999987
No 64
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=54.54 E-value=1.6e+02 Score=26.25 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=64.9
Q ss_pred CChHHHHHHHHHHHHHhCCCccceeE-eecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHH
Q 041428 94 LSPDRVRSALNNTLQELQLDYLDLYL-IHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKK 172 (322)
Q Consensus 94 ~~~~~i~~~~~~SL~~Lg~d~iDl~~-lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~ 172 (322)
.+++.+.+..++-+ .-|-+.||+=. --+|... . .+ .....+.+...++.+++.-.+ -|.|-+++++.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~-~------~~---~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v 88 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAE-P------VS---VEEELERVIPVLRALAGEPDV-PISVDTFNAEV 88 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCC-c------CC---HHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHH
Confidence 34555555555443 56889999842 1222210 0 00 001123455666777665333 38999999999
Q ss_pred HHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEEeccC
Q 041428 173 LNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSPL 217 (322)
Q Consensus 173 l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl 217 (322)
++++++.+ .+.++-+ +......++++.++++|..++.+..-
T Consensus 89 ~~aaL~~g--~~iINdi--s~~~~~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 89 AEAALKAG--ADIINDV--SGGRGDPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred HHHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECcC
Confidence 99999986 2333333 23322268999999999999987643
No 65
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=53.75 E-value=1.9e+02 Score=26.99 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=28.7
Q ss_pred EcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCeEecC
Q 041428 17 KLLSGHTIPAVGLGTWKSGDEAFKSVFTAIVEGGYRHIDTA 57 (322)
Q Consensus 17 ~l~tg~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DTA 57 (322)
+|++|..... |+++.++..++++..-++||..|+.+
T Consensus 10 TLRDG~q~~~-----~~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 10 TLRDGMHAVR-----HQYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred CCCCcCcCCC-----CccCHHHHHHHHHHHHHcCCCEEEee
Confidence 5677777654 34566888999999999999999994
No 66
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=53.48 E-value=1.3e+02 Score=26.03 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCC---cHHHHHHHHHcCceEEEeccCCC
Q 041428 148 WREMEKLVKDGLVR-DVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWR---NDKILEACKKNGIHVTAYSPLGS 219 (322)
Q Consensus 148 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~ll~~~~~~gi~via~~pl~~ 219 (322)
++.+.+|.+...+. ..+=|-++.+.+..+++... .+++|+..+..-. -..+..+|+++|+.++.++.+.+
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~--~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s 207 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELGA--VDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLES 207 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCC--CCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCC
Confidence 55677778777665 23344456677766666544 3777776554422 26789999999999999877654
No 67
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=53.09 E-value=1.9e+02 Score=26.66 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=67.7
Q ss_pred HHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccE-EEecCC---CHHHHHHHHhhc
Q 041428 105 NTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRD-VGVCNF---TLKKLNKLLNFA 180 (322)
Q Consensus 105 ~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~-iGvs~~---~~~~l~~~~~~~ 180 (322)
...++.| .|++-+|-.+.... .-+.+.+|+.+.|+++.+.=++-. ||=|.. +++.++++.+.+
T Consensus 158 k~Vk~fg---admvTiHlIsTdPk----------i~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEva 224 (403)
T COG2069 158 KCVKKFG---ADMVTIHLISTDPK----------IKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVA 224 (403)
T ss_pred HHHHHhC---CceEEEEeecCCcc----------ccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhh
Confidence 3455666 56777776443211 113678999999999999988754 466655 478888888776
Q ss_pred CCCCceeceeeCCCCCcHHHHHHHHHcCceEEEeccCCC
Q 041428 181 KTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSPLGS 219 (322)
Q Consensus 181 ~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl~~ 219 (322)
.-. .+.-...|+-..-+.+.+.+.++|=.|++|+++.-
T Consensus 225 EGe-RclLaSanldlDy~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 225 EGE-RCLLASANLDLDYERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred cCc-eEEeeccccccCHHHHHHHHHhcCceEEEeeccCh
Confidence 521 22222233333337899999999999999999854
No 68
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=51.89 E-value=1.4e+02 Score=24.69 Aligned_cols=101 Identities=20% Similarity=0.219 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCC-------cHHHHHHHHHcCceEEEeccC
Q 041428 145 EGVWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWR-------NDKILEACKKNGIHVTAYSPL 217 (322)
Q Consensus 145 ~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-------~~~ll~~~~~~gi~via~~pl 217 (322)
+++++.-.+--++.-|++|=|.+.+.....++++...-...++-+.++.... +.++-+..+++|..|..-|-.
T Consensus 13 ~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sHa 92 (186)
T COG1751 13 DETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSHA 92 (186)
T ss_pred HHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehhh
Confidence 5777777777778889999999888888888877755433344343333222 278999999999999886655
Q ss_pred CCCCCCCCCCCCHHHHHHHHhcC-CCHHHHHHHH--hhhcC
Q 041428 218 GSQGAGRDLIHDPTVERIAKKLN-KSPGQILLKW--GIHRG 255 (322)
Q Consensus 218 ~~~G~l~~~~~~~~l~~la~~~~-~s~~qlal~~--~l~~~ 255 (322)
.+ | .=+.+..++| .+|.++...- ..++|
T Consensus 93 lS-g---------~eRsis~kfGG~~p~eiiAetLR~fg~G 123 (186)
T COG1751 93 LS-G---------VERSISRKFGGYSPLEIIAETLRMFGQG 123 (186)
T ss_pred hh-c---------chhhhhhhcCCcchHHHHHHHHHHhcCC
Confidence 44 3 1234455553 5666654332 34555
No 69
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=51.78 E-value=2.1e+02 Score=27.84 Aligned_cols=145 Identities=12% Similarity=0.045 Sum_probs=77.1
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCC-CcEEEEecCCCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCC
Q 041428 58 KQYGVQENIGLALKEAMQTGIQR-KDLFVTSKLWCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKD 136 (322)
Q Consensus 58 ~~Yg~e~~lG~~l~~~~~~~~~R-~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~ 136 (322)
-.||.++.+-++|++..+.. ++ +-++|.|=+. ...--+.+..-+++.-++++ +.++.+|.|.......
T Consensus 97 ~V~Gg~~~L~~aI~~~~~~~-~p~~~I~V~~tC~-~~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~------ 165 (443)
T TIGR01862 97 IVFGGEKKLKKLIHEAFTEF-PLIKAISVYATCP-TGLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQ------ 165 (443)
T ss_pred eeeCcHHHHHHHHHHHHHhC-CccceEEEECCCh-HHHhccCHHHHHHHHHHhcC---CCEEEEecCCccCCcc------
Confidence 34788888888988765533 44 5677777652 12222334433333333443 7899999987643100
Q ss_pred CccccccHHHHHHH-HHHHH--------HcCCccEEEecCC--CHHHHHHHHhhcCCCCceec--------------eee
Q 041428 137 GEVLEFDMEGVWRE-MEKLV--------KDGLVRDVGVCNF--TLKKLNKLLNFAKTKPSVCQ--------------MEM 191 (322)
Q Consensus 137 ~~~~~~~~~~~~~~-L~~l~--------~~Gkir~iGvs~~--~~~~l~~~~~~~~~~~~~~q--------------~~~ 191 (322)
..-...+.++ ++.+. +.++|--||-.++ +.+.+.++++..++++...- ..+
T Consensus 166 ----~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~~~A~l 241 (443)
T TIGR01862 166 ----SKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLMHKAKL 241 (443)
T ss_pred ----chHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCE
Confidence 0112222332 33343 2466777885554 35678888888776432211 112
Q ss_pred CCC-CCc--HHHHHHHH-HcCceEEEeccC
Q 041428 192 HPG-WRN--DKILEACK-KNGIHVTAYSPL 217 (322)
Q Consensus 192 ~~~-~~~--~~ll~~~~-~~gi~via~~pl 217 (322)
|+. .+. ..+.++.+ +.|++.+...|+
T Consensus 242 niv~~~~~~~~~A~~L~er~GiP~~~~~p~ 271 (443)
T TIGR01862 242 NLVHCARSANYIANELEERYGIPWMKIDFF 271 (443)
T ss_pred EEEEChHHHHHHHHHHHHHhCCCeEecccC
Confidence 222 111 22334444 559999988765
No 70
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=51.46 E-value=1.7e+02 Score=25.84 Aligned_cols=98 Identities=16% Similarity=0.210 Sum_probs=58.3
Q ss_pred HHHHHHH-----HHHHHcCCccEEEecCCC---HHHHHHHHhhcC---CCCcee---ceeeCCCCCc-----HHHHHHHH
Q 041428 145 EGVWREM-----EKLVKDGLVRDVGVCNFT---LKKLNKLLNFAK---TKPSVC---QMEMHPGWRN-----DKILEACK 205 (322)
Q Consensus 145 ~~~~~~L-----~~l~~~Gkir~iGvs~~~---~~~l~~~~~~~~---~~~~~~---q~~~~~~~~~-----~~ll~~~~ 205 (322)
.+.|+.| .+..+.|.--++++.-|+ +..++..+.... ..-+++ .+.+.-.... .+-+++|+
T Consensus 45 ~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~ 124 (254)
T COG1099 45 LDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAIPPELEEVLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELAR 124 (254)
T ss_pred HHHHHHHHccchhhHHhhCceeeEEeccCCCCCCchHHHHHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHHH
Confidence 4455544 344678888888888886 222333333211 012233 3333333332 45788999
Q ss_pred HcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHHH
Q 041428 206 KNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQIL 247 (322)
Q Consensus 206 ~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~qla 247 (322)
++++++|.+.|=.. +.--..+.-+++.+.|+.+.++.
T Consensus 125 e~dvPviVHTPr~n-----K~e~t~~ildi~~~~~l~~~lvv 161 (254)
T COG1099 125 ELDVPVIVHTPRRN-----KKEATSKILDILIESGLKPSLVV 161 (254)
T ss_pred HcCCcEEEeCCCCc-----chhHHHHHHHHHHHcCCChhhee
Confidence 99999999999754 22223456677888888777643
No 71
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=51.18 E-value=2.3e+02 Score=27.04 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHcCCCeEecCCCcCCHHH---HHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCC
Q 041428 36 DEAFKSVFTAIVEGGYRHIDTAKQYGVQEN---IGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQL 112 (322)
Q Consensus 36 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~---lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~ 112 (322)
..+..++|+.++++|+ ..+.|++++. +-.+.+++=...++.+.++++.-+ ...+...++.|-
T Consensus 40 pp~i~~Al~~rvdhGv----fGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~V----------Vpgi~~~I~~~T- 104 (388)
T COG1168 40 PPEIIEALRERVDHGV----FGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGV----------VPGISLAIRALT- 104 (388)
T ss_pred CHHHHHHHHHHHhcCC----CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcc----------hHhHHHHHHHhC-
Confidence 4678899999999997 3444666544 333444321112455555554433 233333344442
Q ss_pred CccceeEeecCCC
Q 041428 113 DYLDLYLIHWPFR 125 (322)
Q Consensus 113 d~iDl~~lH~p~~ 125 (322)
+-=|-+.++.|..
T Consensus 105 ~~gd~Vvi~tPvY 117 (388)
T COG1168 105 KPGDGVVIQTPVY 117 (388)
T ss_pred cCCCeeEecCCCc
Confidence 3457777777654
No 72
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=50.67 E-value=2.2e+02 Score=26.74 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=87.0
Q ss_pred ChhHHHHHHHHHHHcCCCeEecCCCcCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCCc
Q 041428 35 GDEAFKSVFTAIVEGGYRHIDTAKQYGVQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQLDY 114 (322)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~ 114 (322)
+.++..+.+..+.+.|++.|=.-- .+ .=+++++. -.+++.|..-.+ ..++.+.. .+-++.|. .
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv----~~-~v~avre~-----~G~~~~l~vDaN-~~w~~~~A----~~~~~~l~--~ 188 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL----PK-LFEAVREK-----FGFEFHLLHDVH-HRLTPNQA----ARFGKDVE--P 188 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH----HH-HHHHHHhc-----cCCCceEEEECC-CCCCHHHH----HHHHHHhh--h
Confidence 345555666777788988775310 11 11233332 123444444332 23444332 22333333 3
Q ss_pred cceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhhcCCCCceeceeeCC
Q 041428 115 LDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVR-DVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHP 193 (322)
Q Consensus 115 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~ 193 (322)
.++.++-.|-+. +-++.+.+|++...+. ..|=|.++...+..+++... .+++|+....
T Consensus 189 ~~l~~iEeP~~~-------------------~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a--~di~~~d~~~ 247 (361)
T cd03322 189 YRLFWMEDPTPA-------------------ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERL--IDYIRTTVSH 247 (361)
T ss_pred cCCCEEECCCCc-------------------ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCC--CCEEecCccc
Confidence 567777665432 3366788888887765 66777788899999988754 4777877644
Q ss_pred C---CCcHHHHHHHHHcCceEEEeccC
Q 041428 194 G---WRNDKILEACKKNGIHVTAYSPL 217 (322)
Q Consensus 194 ~---~~~~~ll~~~~~~gi~via~~pl 217 (322)
. ....++.+.|+++|+.++.++..
T Consensus 248 ~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 248 AGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred cCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 3 23378999999999999876544
No 73
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=50.55 E-value=2.1e+02 Score=26.46 Aligned_cols=75 Identities=15% Similarity=0.041 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEecC---------CCHHHHHHHHhhcCCCCceeceeeCCC---CCc-HHHHHHHHHcCce
Q 041428 144 MEGVWREMEKLVKDGLVRDVGVCN---------FTLKKLNKLLNFAKTKPSVCQMEMHPG---WRN-DKILEACKKNGIH 210 (322)
Q Consensus 144 ~~~~~~~L~~l~~~Gkir~iGvs~---------~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~-~~ll~~~~~~gi~ 210 (322)
...+.+.++.+++.|.++.+.+.+ .+.+.++.+.+.+ .. ..+.+..+-. ... ...++.+++.||.
T Consensus 152 ~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g-~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~ 229 (321)
T TIGR03822 152 PRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSG-KT-VYVALHANHARELTAEARAACARLIDAGIP 229 (321)
T ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcC-Cc-EEEEecCCChhhcCHHHHHHHHHHHHcCCE
Confidence 457778888888888887666644 2344455454443 22 2333333211 111 5688888899999
Q ss_pred EEEeccCCCCC
Q 041428 211 VTAYSPLGSQG 221 (322)
Q Consensus 211 via~~pl~~~G 221 (322)
+...+++.. |
T Consensus 230 v~~q~vLl~-g 239 (321)
T TIGR03822 230 MVSQSVLLR-G 239 (321)
T ss_pred EEEEeeEeC-C
Confidence 999888876 5
No 74
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=50.11 E-value=1.9e+02 Score=25.86 Aligned_cols=106 Identities=17% Similarity=0.117 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHHHHhCCCccceeE-eecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 041428 95 SPDRVRSALNNTLQELQLDYLDLYL-IHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKL 173 (322)
Q Consensus 95 ~~~~i~~~~~~SL~~Lg~d~iDl~~-lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l 173 (322)
+.+.+.+..++-+ .-|-+.||+=. --+|....- ..+...+.+...++.+++.-.+- +.|-+++++.+
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i----------~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~ 89 (257)
T cd00739 22 SLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPV----------SVEEELERVIPVLEALRGELDVL-ISVDTFRAEVA 89 (257)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCC----------CHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHH
Confidence 4444444444433 45788888842 222322100 00011233444556666653443 89999999999
Q ss_pred HHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEEecc
Q 041428 174 NKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSP 216 (322)
Q Consensus 174 ~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~p 216 (322)
+++++.+. ..+|-+ +......++++.++++|..++.+..
T Consensus 90 e~al~~G~--~iINdi--sg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 90 RAALEAGA--DIINDV--SGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHhCC--CEEEeC--CCCCCChHHHHHHHHcCCCEEEECC
Confidence 99998852 233333 3332237899999999999999654
No 75
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=49.95 E-value=48 Score=26.44 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCceEEEeccCCC
Q 041428 198 DKILEACKKNGIHVTAYSPLGS 219 (322)
Q Consensus 198 ~~ll~~~~~~gi~via~~pl~~ 219 (322)
.++++.|+++||.|++|-.+..
T Consensus 47 ge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeeec
Confidence 7899999999999999988754
No 76
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=49.58 E-value=2e+02 Score=25.99 Aligned_cols=161 Identities=17% Similarity=0.119 Sum_probs=87.7
Q ss_pred CChhHHHHHHHHHHHcCCCeEec----------CCCcC-CHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHH
Q 041428 34 SGDEAFKSVFTAIVEGGYRHIDT----------AKQYG-VQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSA 102 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi~~~DT----------A~~Yg-~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ 102 (322)
.+.++..++.+.+.+.|+..||. ...|+ +.+.+-+.++...+ .-++-|..|+... . +.+ ..
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~----~~~~Pv~vKl~~~-~--~~~-~~ 170 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKK----ATDVPVIVKLTPN-V--TDI-VE 170 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHh----ccCCCEEEEeCCC-c--hhH-HH
Confidence 45677788888888999999986 22343 55666666655411 1157788898432 1 122 23
Q ss_pred HHHHHHHhCCCccceeE------eec--CCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCC-CHHHH
Q 041428 103 LNNTLQELQLDYLDLYL------IHW--PFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNF-TLKKL 173 (322)
Q Consensus 103 ~~~SL~~Lg~d~iDl~~------lH~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-~~~~l 173 (322)
+-+.+...|.|.|++.- +|. ..+... .....-.+. ....-.++.+.++++.=.+.-||.... +++.+
T Consensus 171 ~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~-~~~gg~sg~---~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da 246 (296)
T cd04740 171 IARAAEEAGADGLTLINTLKGMAIDIETRKPILG-NVTGGLSGP---AIKPIALRMVYQVYKAVEIPIIGVGGIASGEDA 246 (296)
T ss_pred HHHHHHHcCCCEEEEECCCcccccccccCceeec-CCcceecCc---ccchHHHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 33456777876665531 111 000000 000000000 011235667777777656888999987 68888
Q ss_pred HHHHhhcCCCCceeceeeCCCC-Cc------HHHHHHHHHcCc
Q 041428 174 NKLLNFAKTKPSVCQMEMHPGW-RN------DKILEACKKNGI 209 (322)
Q Consensus 174 ~~~~~~~~~~~~~~q~~~~~~~-~~------~~ll~~~~~~gi 209 (322)
.+++..+ . +.+|+--..+. +. .++-++.+++|.
T Consensus 247 ~~~l~~G-A--d~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 247 LEFLMAG-A--SAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHcC-C--CEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 8888754 2 66776433333 11 445555555553
No 77
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=48.88 E-value=2.7e+02 Score=27.25 Aligned_cols=115 Identities=14% Similarity=0.118 Sum_probs=61.1
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhC---C--CccceeEeecCCCCCCCCCC
Q 041428 58 KQYGVQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQ---L--DYLDLYLIHWPFRLKEGASR 132 (322)
Q Consensus 58 ~~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg---~--d~iDl~~lH~p~~~~~~~~~ 132 (322)
-.||.++.+-++|++..+...+.+=++|.|-+- ...--+.+..-+++.-++++ . ..+.++.+|.|....+.
T Consensus 72 ~VfGg~~~L~~ai~~~~~~~~~p~~i~v~ttc~-~eiiGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs~--- 147 (461)
T TIGR02931 72 AVFGALDRVEEAVDVLLTRYPDVKVVPIITTCS-TEIIGDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVGSM--- 147 (461)
T ss_pred eEECcHHHHHHHHHHHHHhcCCCCEEEEECCch-HHhhhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCcH---
Confidence 347888888889887654321234456666652 12222344444444444442 1 13678999988775320
Q ss_pred CCCCCccccccHHHHHHHHH-HHHH----cCCccEEEecCC--CHHHHHHHHhhcCCCC
Q 041428 133 PPKDGEVLEFDMEGVWREME-KLVK----DGLVRDVGVCNF--TLKKLNKLLNFAKTKP 184 (322)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~L~-~l~~----~Gkir~iGvs~~--~~~~l~~~~~~~~~~~ 184 (322)
..-...++++|. ++.. .++|--||-... +.+.+.++++..++.+
T Consensus 148 --------~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v 198 (461)
T TIGR02931 148 --------ITGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEA 198 (461)
T ss_pred --------HHHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCce
Confidence 011223333333 2222 456777774332 4577788888877643
No 78
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=48.26 E-value=1.6e+02 Score=28.50 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=42.2
Q ss_pred CCCChHHHHHHHHHHHHHhCCCccceeEe-ecCCCCCCCCCCCCCCCcccccc--HHHHHHHHH-HHHHcCCccEEEecC
Q 041428 92 ADLSPDRVRSALNNTLQELQLDYLDLYLI-HWPFRLKEGASRPPKDGEVLEFD--MEGVWREME-KLVKDGLVRDVGVCN 167 (322)
Q Consensus 92 ~~~~~~~i~~~~~~SL~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~-~l~~~Gkir~iGvs~ 167 (322)
+..+.+.+.+.++..++ |+.|+|.+|.| |-|........ ..++..+.+ ..+.++... .|.+.|- +++|+||
T Consensus 199 P~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~---~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisn 273 (416)
T COG0635 199 PGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRK---IKGKALPDEDEKADMYELVEELLEKAGY-RQYEISN 273 (416)
T ss_pred CCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhc---ccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeech
Confidence 45566777777777664 67999999987 44433211110 111111111 124555444 4556666 9999999
Q ss_pred CCH
Q 041428 168 FTL 170 (322)
Q Consensus 168 ~~~ 170 (322)
|..
T Consensus 274 fa~ 276 (416)
T COG0635 274 FAK 276 (416)
T ss_pred hcC
Confidence 986
No 79
>PRK13561 putative diguanylate cyclase; Provisional
Probab=48.00 E-value=76 Score=32.29 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=71.3
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccE
Q 041428 83 LFVTSKLWCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRD 162 (322)
Q Consensus 83 ~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~ 162 (322)
+.|+..+.........+...+.+.|++.+.+ ...+.+--++.... ...+.+.+.+.+|++.|- .
T Consensus 486 ~~~~iNlS~~~l~~~~f~~~l~~~l~~~~~~-~~~l~lEi~E~~~~-------------~~~~~~~~~~~~l~~~G~--~ 549 (651)
T PRK13561 486 LPLSVNLSALQLMHPNMVADMLELLTRYRIQ-PGTLILEVTESRRI-------------DDPHAAVAILRPLRNAGV--R 549 (651)
T ss_pred ceEEEECCHHHHCCchHHHHHHHHHHHcCCC-hHHEEEEEchhhhh-------------cCHHHHHHHHHHHHHCCC--E
Confidence 4566666444455567778888888888864 34444544332211 235788899999999998 5
Q ss_pred EEecCCC--HHHHHHHHhhcCCCCceeceeeCCCC-----Cc--HHHHHHHHHcCceEEE
Q 041428 163 VGVCNFT--LKKLNKLLNFAKTKPSVCQMEMHPGW-----RN--DKILEACKKNGIHVTA 213 (322)
Q Consensus 163 iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~-----~~--~~ll~~~~~~gi~via 213 (322)
|++.+|. ...+..+......+++.+-+.-+... +. ..++..|+..|+.|+|
T Consensus 550 i~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viA 609 (651)
T PRK13561 550 VALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIA 609 (651)
T ss_pred EEEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 7777775 23444444333344455444322211 11 6789999999999998
No 80
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=47.85 E-value=77 Score=29.77 Aligned_cols=67 Identities=12% Similarity=0.061 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhhcCCCCceeceeeCCCC---CcHHHHHHHHHcCceEEEec
Q 041428 147 VWREMEKLVKDGLVR-DVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGW---RNDKILEACKKNGIHVTAYS 215 (322)
Q Consensus 147 ~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~ll~~~~~~gi~via~~ 215 (322)
-++.+.+|+++..+. +.|=+-++...+..+++...+ +++|+.....- .-..+..+|+++|+.++..+
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~--d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~ 297 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAA--DVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGT 297 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCC--CeEEEeecccCCHHHHHHHHHHHHHcCCceeecC
Confidence 345566666654444 334444456666666655332 45555443321 12556667777777766543
No 81
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=47.64 E-value=1.5e+02 Score=26.68 Aligned_cols=87 Identities=20% Similarity=0.133 Sum_probs=57.7
Q ss_pred cceeecccCChh-HHHHHHHHHHHcCCCeEecCCCcC----CHHHHHHHHHHHHhc-CCCCCcEEEEecCCCCCCChHHH
Q 041428 26 AVGLGTWKSGDE-AFKSVFTAIVEGGYRHIDTAKQYG----VQENIGLALKEAMQT-GIQRKDLFVTSKLWCADLSPDRV 99 (322)
Q Consensus 26 ~lglG~~~~~~~-~~~~~l~~Al~~Gi~~~DTA~~Yg----~e~~lG~~l~~~~~~-~~~R~~~~i~tK~~~~~~~~~~i 99 (322)
++.+=+...+++ +...+.+.|.++|..|+=|+..|+ +.+. -+.+++.+.. +. .. -+..|....-.+.+..
T Consensus 135 KVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~ed-v~lm~~~i~~~~~-~~--~vgIKAsGGIrt~~~A 210 (257)
T PRK05283 135 KVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEA-ARIMLEVIRDMGV-AK--TVGFKPAGGVRTAEDA 210 (257)
T ss_pred EEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHH-HHHHHHHHHhccc-CC--CeeEEccCCCCCHHHH
Confidence 444545445666 478899999999999999999996 1221 1223332110 10 11 2556664455678899
Q ss_pred HHHHHHHHHHhCCCccc
Q 041428 100 RSALNNTLQELQLDYLD 116 (322)
Q Consensus 100 ~~~~~~SL~~Lg~d~iD 116 (322)
..-++..-+.||.++++
T Consensus 211 ~~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 211 AQYLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHHHhChhhcC
Confidence 99999999999998876
No 82
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=47.25 E-value=2e+02 Score=25.53 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhcCCCCC--cEEEEecCCCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccc
Q 041428 63 QENIGLALKEAMQTGIQRK--DLFVTSKLWCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVL 140 (322)
Q Consensus 63 e~~lG~~l~~~~~~~~~R~--~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~ 140 (322)
..++.++++.... .+. .+.++..+....+....+...+.+-+++.+.+.- -+.+---+...
T Consensus 69 ~~v~~~a~~~~~~---~~~~~~~~l~iNis~~~l~~~~~~~~l~~~l~~~~~~~~-~l~lEitE~~~------------- 131 (256)
T COG2200 69 RWVLEEACRQLRT---WPRAGPLRLAVNLSPVQLRSPGLVDLLLRLLARLGLPPH-RLVLEITESAL------------- 131 (256)
T ss_pred HHHHHHHHHHHHh---hhhcCCceEEEEcCHHHhCCchHHHHHHHHHHHhCCCcc-eEEEEEeCchh-------------
Confidence 4455566655421 122 4777777754444445667788888888876532 22222211110
Q ss_pred cccHHHHHHHHHHHHHcCCccEEEecCCC--HHHHHHHHhhcCCCCceeceeeCCCC--------Cc--HHHHHHHHHcC
Q 041428 141 EFDMEGVWREMEKLVKDGLVRDVGVCNFT--LKKLNKLLNFAKTKPSVCQMEMHPGW--------RN--DKILEACKKNG 208 (322)
Q Consensus 141 ~~~~~~~~~~L~~l~~~Gkir~iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~--------~~--~~ll~~~~~~g 208 (322)
-.....+...+.+|++.|- .|.+.+|. -..+..+.+ .+++.+-+.-+... .. ..++..|++.|
T Consensus 132 ~~~~~~~~~~l~~L~~~G~--~ialDDFGtG~ssl~~L~~---l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~ 206 (256)
T COG2200 132 IDDLDTALALLRQLRELGV--RIALDDFGTGYSSLSYLKR---LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLG 206 (256)
T ss_pred hcCHHHHHHHHHHHHHCCC--eEEEECCCCCHHHHHHHhh---CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCC
Confidence 0123468889999999992 46777774 234444443 34444444332222 11 67999999999
Q ss_pred ceEEEe
Q 041428 209 IHVTAY 214 (322)
Q Consensus 209 i~via~ 214 (322)
+.|+|=
T Consensus 207 ~~vvaE 212 (256)
T COG2200 207 LTVVAE 212 (256)
T ss_pred CEEEEe
Confidence 999983
No 83
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=47.10 E-value=2.7e+02 Score=27.66 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=83.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCcc
Q 041428 60 YGVQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEV 139 (322)
Q Consensus 60 Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~ 139 (322)
+|+++.+-+++++..+. .+.+-++|.|-+ .++-|-..++...+.++. .+.++.++.|.......
T Consensus 67 ~G~~ekL~~aI~~~~~~-~~P~~I~V~sTC-----~seiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~~--------- 130 (519)
T PRK02910 67 RGTAELLKDTLRRADER-FQPDLIVVGPSC-----TAELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKEN--------- 130 (519)
T ss_pred CChHHHHHHHHHHHHHh-cCCCEEEEeCCc-----HHHHhccCHHHHHHHhCC-CCCEEEEecCCcccccc---------
Confidence 45677777777765432 234445666655 244455555555555664 36799999886643210
Q ss_pred ccccHHHHHHHHH-HHH-----------HcCCccEEEecCC------CHHHHHHHHhhcCCCCceec-------------
Q 041428 140 LEFDMEGVWREME-KLV-----------KDGLVRDVGVCNF------TLKKLNKLLNFAKTKPSVCQ------------- 188 (322)
Q Consensus 140 ~~~~~~~~~~~L~-~l~-----------~~Gkir~iGvs~~------~~~~l~~~~~~~~~~~~~~q------------- 188 (322)
.....++.++. .+. +.++|--||.++. +...+.++++..++.+.++-
T Consensus 131 --~G~~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~l~ 208 (519)
T PRK02910 131 --WAADETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKRLP 208 (519)
T ss_pred --hHHHHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcc
Confidence 11222322222 121 2345777887542 34677888887765432211
Q ss_pred -eeeCCCCCc---HHHHHHHH-HcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCH
Q 041428 189 -MEMHPGWRN---DKILEACK-KNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSP 243 (322)
Q Consensus 189 -~~~~~~~~~---~~ll~~~~-~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~ 243 (322)
..+|+.... ..+.++.+ +.|++++...|+|-. -..+.++++++..|+..
T Consensus 209 ~A~~nivl~~~~g~~~A~~Lee~fGiP~i~~~PiG~~------~T~~fL~~la~~~g~~~ 262 (519)
T PRK02910 209 AAWFNVVLYREIGESAARYLEREFGQPYVKTVPIGVG------ATARFIREVAELLNLDG 262 (519)
T ss_pred cCcEEEEeCHHHHHHHHHHHHHHhCCcccccccccHH------HHHHHHHHHHHHhCCCh
Confidence 112222111 22434443 558998887787531 12345556666555543
No 84
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=46.29 E-value=1.2e+02 Score=29.89 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=65.5
Q ss_pred CChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHH----cCCccEEEec--C
Q 041428 94 LSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVK----DGLVRDVGVC--N 167 (322)
Q Consensus 94 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~----~Gkir~iGvs--~ 167 (322)
.+++.|.+.++. +...|...+-++.=..|. ..+++-+.+.+..+++ .|.++.++|+ .
T Consensus 115 Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p~----------------~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~ 177 (469)
T PRK09613 115 LTQEEIREEVKA-LEDMGHKRLALVAGEDPP----------------NCDIEYILESIKTIYSTKHGNGEIRRVNVNIAP 177 (469)
T ss_pred CCHHHHHHHHHH-HHHCCCCEEEEEeCCCCC----------------CCCHHHHHHHHHHHHHhccccCcceeeEEEeec
Confidence 467778888875 467886666553211111 1345666666777665 5677766664 4
Q ss_pred CCHHHHHHHHhhcCCCCceeceeeC-----CCCC-----c----HHHHHHHHHcCceEEEeccCC
Q 041428 168 FTLKKLNKLLNFAKTKPSVCQMEMH-----PGWR-----N----DKILEACKKNGIHVTAYSPLG 218 (322)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~~~q~~~~-----~~~~-----~----~~ll~~~~~~gi~via~~pl~ 218 (322)
.+.+++.++.+.+-....++|--|| -+++ . -+.++.+++.|+.-++.+.+-
T Consensus 178 lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~ 242 (469)
T PRK09613 178 TTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLF 242 (469)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEE
Confidence 4678888888776433334444432 1111 1 468889999999866666654
No 85
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=46.12 E-value=2.5e+02 Score=26.17 Aligned_cols=121 Identities=15% Similarity=0.134 Sum_probs=68.6
Q ss_pred CChhHHHHHHHHHHHcCCCeEecCCCcCCHHHH----------------HHHHHHHHhcCCCCCcEEEEecCCCCCCChH
Q 041428 34 SGDEAFKSVFTAIVEGGYRHIDTAKQYGVQENI----------------GLALKEAMQTGIQRKDLFVTSKLWCADLSPD 97 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~l----------------G~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~ 97 (322)
++.+...++.+.|-+.|+-+|-|--.+.+-..+ ---|-+.+++ ..+.+.++|=. .+-+
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGm----a~~~ 160 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGM----ATIE 160 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEccc----ccHH
Confidence 566777899999999999999776555421111 1111111111 23467777765 2345
Q ss_pred HHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHH-HHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 041428 98 RVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEG-VWREMEKLVKDGLVRDVGVCNFTLKKLNKL 176 (322)
Q Consensus 98 ~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~ 176 (322)
.+.++++...+ -|. .|+.+||+...+.. +.++ -+.+|.+|.+.= ---||+|.|+...+.-+
T Consensus 161 ei~~av~~~r~-~g~--~~i~LLhC~s~YPa--------------p~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l 222 (347)
T COG2089 161 EIEEAVAILRE-NGN--PDIALLHCTSAYPA--------------PFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPL 222 (347)
T ss_pred HHHHHHHHHHh-cCC--CCeEEEEecCCCCC--------------CHHHhhHHHHHHHHHHh-CCccccccCccchhHHH
Confidence 66666654433 333 49999999665422 2222 233444444432 33599999997755444
Q ss_pred Hh
Q 041428 177 LN 178 (322)
Q Consensus 177 ~~ 178 (322)
..
T Consensus 223 ~A 224 (347)
T COG2089 223 AA 224 (347)
T ss_pred HH
Confidence 33
No 86
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=46.08 E-value=2.5e+02 Score=27.44 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=73.6
Q ss_pred CcCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCc
Q 041428 59 QYGVQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGE 138 (322)
Q Consensus 59 ~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 138 (322)
.||.++.+-++|++..+.....+-++|.|=+. ...--+.+..-+++.-++.+ .+.++.+|.|.......
T Consensus 105 VfGge~kL~~aI~e~~~~~p~p~~I~V~stC~-~~lIGDDi~~v~~e~~~~~~--~~pvv~v~t~gf~g~s~-------- 173 (457)
T TIGR01284 105 VFGGEKKLKRCILEAFREFPEIKRMYTYATCT-TALIGDDIDAIAREVMEEIP--DVDVFAINAPGFAGPSQ-------- 173 (457)
T ss_pred EecHHHHHHHHHHHHHHhCCCCceEEEECCCh-HHhhccCHHHHHHHHHHhcC--CCeEEEeeCCCcCCccc--------
Confidence 46778888888888754321233467777652 11112333333333322322 26799999887653100
Q ss_pred cccccHHHHHHH-HHHHH--------HcCCccEEEecCCC--HHHHHHHHhhcCCCCce--------------eceeeCC
Q 041428 139 VLEFDMEGVWRE-MEKLV--------KDGLVRDVGVCNFT--LKKLNKLLNFAKTKPSV--------------CQMEMHP 193 (322)
Q Consensus 139 ~~~~~~~~~~~~-L~~l~--------~~Gkir~iGvs~~~--~~~l~~~~~~~~~~~~~--------------~q~~~~~ 193 (322)
......+..+ +++++ ..++|--||-.++. .+.+.++++..++.+.. -...+|+
T Consensus 174 --~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~el~~lL~~~Gl~v~~~~~g~~s~~ei~~~~~A~lni 251 (457)
T TIGR01284 174 --SKGHHVANITWINDKVGTAEPEITTEYDVNLIGEYNIQGDLWVLKKYFERMGIQVLSTFTGNGCYDELRWMHRAKLNV 251 (457)
T ss_pred --chHHHHHHHHHHHHHhCccCcccCCCCeEEEEccCCchhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHhccccCEEE
Confidence 0011122222 23333 24567788855542 45677888776654321 1112233
Q ss_pred CCC-c--HHHHHHHH-HcCceEEEeccC
Q 041428 194 GWR-N--DKILEACK-KNGIHVTAYSPL 217 (322)
Q Consensus 194 ~~~-~--~~ll~~~~-~~gi~via~~pl 217 (322)
... . ..+.++.+ +.|++.+...|+
T Consensus 252 v~~~~~~~~~A~~Le~~~GiP~~~~~~~ 279 (457)
T TIGR01284 252 VRCARSANYIANELEERYGIPRLDIDFF 279 (457)
T ss_pred EEChHHHHHHHHHHHHHhCCCeEecccC
Confidence 211 1 23444444 459999987665
No 87
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=45.58 E-value=65 Score=31.75 Aligned_cols=127 Identities=18% Similarity=0.153 Sum_probs=73.1
Q ss_pred HHHHHHHHcCCCeEe--cCCCc---CC-------HHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC-ChHH---------
Q 041428 41 SVFTAIVEGGYRHID--TAKQY---GV-------QENIGLALKEAMQTGIQRKDLFVTSKLWCADL-SPDR--------- 98 (322)
Q Consensus 41 ~~l~~Al~~Gi~~~D--TA~~Y---g~-------e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~-~~~~--------- 98 (322)
+-.....+.|+..+= ||.+| |+ -+.+..+-++.+. +-.+-++|+++-++.... .|..
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g-~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l 184 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFG-GDLAGKLFLTAGLGGMGGAQPLAATMAGGVGL 184 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHST-TS-TT-EEEEE--STTCCHHHHHHHHTT-EEE
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcC-CCCcceEEEEecccccccchHHHHHhcCceEE
Confidence 455677788887664 66665 23 3444555555443 335667899888753211 0000
Q ss_pred -HHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 041428 99 -VRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKLNKLL 177 (322)
Q Consensus 99 -i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~ 177 (322)
+.-.-.+.-+|+.+.|+|.+. .+.+++++..++.+++|+...||+-..-++.+++++
T Consensus 185 ~vEvd~~ri~kR~~~g~ld~~~----------------------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~ 242 (546)
T PF01175_consen 185 IVEVDPSRIEKRLEQGYLDEVT----------------------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELV 242 (546)
T ss_dssp EEES-HHHHHHHHHTTSSSEEE----------------------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHH
T ss_pred EEEECHHHHHHHHhCCCeeEEc----------------------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHH
Confidence 011223455788889999874 457899999999999999999999999899999998
Q ss_pred hhcCCCCce--eceee
Q 041428 178 NFAKTKPSV--CQMEM 191 (322)
Q Consensus 178 ~~~~~~~~~--~q~~~ 191 (322)
+.. +.|++ -|...
T Consensus 243 ~~~-i~pDl~tDQTS~ 257 (546)
T PF01175_consen 243 ERG-IIPDLVTDQTSA 257 (546)
T ss_dssp HTT----SEE---SST
T ss_pred HcC-CCCCcccCCCcc
Confidence 874 33444 35544
No 88
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=45.41 E-value=2.9e+02 Score=26.62 Aligned_cols=168 Identities=15% Similarity=0.079 Sum_probs=86.5
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCC-CcEEEEecCCCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCC
Q 041428 58 KQYGVQENIGLALKEAMQTGIQR-KDLFVTSKLWCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKD 136 (322)
Q Consensus 58 ~~Yg~e~~lG~~l~~~~~~~~~R-~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~ 136 (322)
-.||.++.+.++|++..+.. ++ +-++|.|-+.. ..--+.+..-+++.-++++ ++++.+|.|....... ..
T Consensus 78 vVfGg~~kL~~~I~~~~~~~-~p~~~I~V~tTC~~-~iIGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~s~----~~ 148 (421)
T cd01976 78 IVFGGDKKLAKAIDEAYELF-PLNKGISVQSECPV-GLIGDDIEAVARKASKELG---IPVVPVRCEGFRGVSQ----SL 148 (421)
T ss_pred eecCCHHHHHHHHHHHHHhC-CCccEEEEECCChH-HHhccCHHHHHHHHHHhhC---CCEEEEeCCCccCCcc----cH
Confidence 34788888899998875543 34 56777776621 1112233333333333343 6788999887642100 00
Q ss_pred CccccccHHHHHHHHHHHH-----HcCCccEEEecCC--CHHHHHHHHhhcCCCCceec--------------eeeCCCC
Q 041428 137 GEVLEFDMEGVWREMEKLV-----KDGLVRDVGVCNF--TLKKLNKLLNFAKTKPSVCQ--------------MEMHPGW 195 (322)
Q Consensus 137 ~~~~~~~~~~~~~~L~~l~-----~~Gkir~iGvs~~--~~~~l~~~~~~~~~~~~~~q--------------~~~~~~~ 195 (322)
+ .......+++.|.... +.++|--||-.++ +.+.+.++++..++++...- ..+|+..
T Consensus 149 G--~~~a~~ai~~~l~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lniv~ 226 (421)
T cd01976 149 G--HHIANDAIRDHILGKRNEFEPTPYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNLIH 226 (421)
T ss_pred H--HHHHHHHHHHHHhccCCccCCCCCeEEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEE
Confidence 0 0011223333333221 1356777885554 34668888888775432111 1112221
Q ss_pred Cc---HHHHHHHH-HcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCC
Q 041428 196 RN---DKILEACK-KNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKS 242 (322)
Q Consensus 196 ~~---~~ll~~~~-~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s 242 (322)
.. ..+.++.+ +.|++.+...|++- --..+.++++++..|.+
T Consensus 227 ~~~~~~~~a~~Le~~fGiP~~~~~p~Gi------~~t~~~l~~ia~~~g~~ 271 (421)
T cd01976 227 CYRSMNYIARMMEEKYGIPWMEYNFFGP------TKIAESLRKIAAYFDDE 271 (421)
T ss_pred CcHHHHHHHHHHHHHhCCcEEecccCCH------HHHHHHHHHHHHHhCch
Confidence 11 12344444 46999998877632 11245677777777764
No 89
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=44.94 E-value=2.7e+02 Score=26.08 Aligned_cols=91 Identities=16% Similarity=0.073 Sum_probs=46.5
Q ss_pred CCcEEEEecCCCCC-----CChHHHHHHHHHHHHHhCCCcccee-Eeec-CCCCCCCCCCCCCCCccccccHHHHHHHHH
Q 041428 80 RKDLFVTSKLWCAD-----LSPDRVRSALNNTLQELQLDYLDLY-LIHW-PFRLKEGASRPPKDGEVLEFDMEGVWREME 152 (322)
Q Consensus 80 R~~~~i~tK~~~~~-----~~~~~i~~~~~~SL~~Lg~d~iDl~-~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 152 (322)
.+++.|..|+...+ .+.+.. ..+-+-|+.+|+|+|++- -.|. +.+.... ..+.........
T Consensus 202 G~d~~v~iRi~~~D~~~~g~~~~e~-~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~-----------~~~~~~~~~~~~ 269 (353)
T cd02930 202 GEDFIIIYRLSMLDLVEGGSTWEEV-VALAKALEAAGADILNTGIGWHEARVPTIAT-----------SVPRGAFAWATA 269 (353)
T ss_pred CCCceEEEEecccccCCCCCCHHHH-HHHHHHHHHcCCCEEEeCCCcCCCCCccccc-----------cCCchhhHHHHH
Confidence 45677887775433 233332 234455677787777662 1232 1111000 001111223345
Q ss_pred HHHHcCCccEEEecCC-CHHHHHHHHhhcCC
Q 041428 153 KLVKDGLVRDVGVCNF-TLKKLNKLLNFAKT 182 (322)
Q Consensus 153 ~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~ 182 (322)
++++.=.+-=++...+ +++.++++++.+..
T Consensus 270 ~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~ 300 (353)
T cd02930 270 KLKRAVDIPVIASNRINTPEVAERLLADGDA 300 (353)
T ss_pred HHHHhCCCCEEEcCCCCCHHHHHHHHHCCCC
Confidence 6666656666776664 67778888876554
No 90
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=44.92 E-value=89 Score=30.69 Aligned_cols=128 Identities=23% Similarity=0.263 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCcccccc
Q 041428 64 ENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFD 143 (322)
Q Consensus 64 ~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~ 143 (322)
+-+|.+|+ .+.+++|+..+...|+....+..-+.+-+++-++..=-+ -|.--++. ..+
T Consensus 342 ~dlG~~L~-------~~~~l~VsINl~a~Dl~s~rli~~~~~~l~~~~v~pqQI-~lElTER~--------------f~D 399 (524)
T COG4943 342 RDLGDLLR-------QHRDLHVSINLSASDLASPRLIDRLNRKLAQYQVRPQQI-ALELTERT--------------FAD 399 (524)
T ss_pred HHhHHHHH-------hCcceEEEEeeeehhhcCchHHHHHHHHHHhcCcChHHh-eeehhhhh--------------hcC
Confidence 34666666 367789998887778877888888888888777542111 11111110 145
Q ss_pred HHHHHHHHHHHHHcCCccEE---EecCCCHHHHHHH-HhhcCCCCceece-eeCCCCCc--HHHHHHHHHcCceEEE
Q 041428 144 MEGVWREMEKLVKDGLVRDV---GVCNFTLKKLNKL-LNFAKTKPSVCQM-EMHPGWRN--DKILEACKKNGIHVTA 213 (322)
Q Consensus 144 ~~~~~~~L~~l~~~Gkir~i---Gvs~~~~~~l~~~-~~~~~~~~~~~q~-~~~~~~~~--~~ll~~~~~~gi~via 213 (322)
.......+.++++.|.--+| |..--+..-+..+ ++.-+++=++++. .++..... ..++++||++|+.+++
T Consensus 400 ~~~~~~iI~r~ReaG~~IyIDDFGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVa 476 (524)
T COG4943 400 PKKMTPIILRLREAGHEIYIDDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVA 476 (524)
T ss_pred chhhhHHHHHHHhcCCeEEEccCcCcchhHHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEe
Confidence 67788889999999994333 3322222222221 0111111122221 22222222 6799999999999998
No 91
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=44.80 E-value=1.7e+02 Score=28.37 Aligned_cols=154 Identities=15% Similarity=0.184 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHcCCCeEecCCCcC--CHHHHHH---HHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHh
Q 041428 36 DEAFKSVFTAIVEGGYRHIDTAKQYG--VQENIGL---ALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQEL 110 (322)
Q Consensus 36 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg--~e~~lG~---~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~L 110 (322)
+..+.+++...+..+..--|.= .|| .+..+-. -++++| +-..+++.++.-. . -+-+-+.+++-.....
T Consensus 56 ~~~Vldam~~~~~~~~~nPh~~-~y~w~~~~~~E~aR~~VAklI--nAd~~dIiFts~A-T--Es~Nlvl~~v~~~~~~- 128 (428)
T KOG1549|consen 56 DPRVLDAMLPYLLEYLGNPHSR-SYGWKAEDAVEAAREQVAKLI--NADPSDIVFTSGA-T--ESNNLVLKGVARFFGD- 128 (428)
T ss_pred CHHHHHHHHHHHHHhhcCCCcc-ccchhhhHHHHHHHHHHHHHh--CCCCCcEEEeCCc-h--HHHHHHHHHhhccccc-
Confidence 3455666677776666555543 465 3322221 122333 2134444444332 1 1123344444444444
Q ss_pred CCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHhhcCCC-----C
Q 041428 111 QLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGL-VRDVGVCNFTLKKLNKLLNFAKTK-----P 184 (322)
Q Consensus 111 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk-ir~iGvs~~~~~~l~~~~~~~~~~-----~ 184 (322)
++++ .++++|.-. .-+....+.++++|. ++++.+.+-....++++.+.-..+ +
T Consensus 129 ~~~k-~iitl~~eH--------------------~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I 187 (428)
T KOG1549|consen 129 KTKK-HIITLQTEH--------------------PCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSI 187 (428)
T ss_pred cccc-eEEEecccC--------------------cchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEE
Confidence 4443 566666421 234455666677775 677777755544444444443322 2
Q ss_pred ceeceeeCCCCCcHHHHHHHHHcCceEEEeccC
Q 041428 185 SVCQMEMHPGWRNDKILEACKKNGIHVTAYSPL 217 (322)
Q Consensus 185 ~~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl 217 (322)
+.+..+.....+-+++...|++.||.+..=..-
T Consensus 188 ~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQ 220 (428)
T KOG1549|consen 188 MHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQ 220 (428)
T ss_pred EecccCccccccHHHHHHHhCcCCcEEEeehhh
Confidence 233334444444488888999998877664443
No 92
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=43.85 E-value=1.2e+02 Score=29.02 Aligned_cols=70 Identities=7% Similarity=0.012 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhhcCCCCceeceeeCCC---CCcHHHHHHHHHcCceEEEeccC
Q 041428 146 GVWREMEKLVKDGLVR-DVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPG---WRNDKILEACKKNGIHVTAYSPL 217 (322)
Q Consensus 146 ~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~pl 217 (322)
+-++.+.+|++.-.+. ..|=|-++...+..+++...+ +++|+...-. .....+..+|+.+|+.++.++..
T Consensus 244 ~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~--dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 244 ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLI--DYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCC--CEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 3467788888876665 556667788899999887543 7777765443 22368999999999999987654
No 93
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=43.82 E-value=88 Score=29.43 Aligned_cols=68 Identities=12% Similarity=0.045 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhhcCCCCceeceeeCCCC---CcHHHHHHHHHcCceEEEeccC
Q 041428 148 WREMEKLVKDGLVR-DVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGW---RNDKILEACKKNGIHVTAYSPL 217 (322)
Q Consensus 148 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~ll~~~~~~gi~via~~pl 217 (322)
++.+.+|++...+. ..|=|-++...+.++++.... +++|+.....- .-..+...|+.+|+.++..+.+
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~--d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~ 298 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAA--DVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTML 298 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCC--CEEEEcccccCCHHHHHHHHHHHHHcCCceeeecch
Confidence 55566666665544 445556666666666665433 55665544322 1255777777777777655433
No 94
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=43.59 E-value=1e+02 Score=31.66 Aligned_cols=113 Identities=19% Similarity=0.150 Sum_probs=73.1
Q ss_pred HHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCc----eeceeeCCCCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCC
Q 041428 152 EKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPS----VCQMEMHPGWRNDKILEACKKNGIHVTAYSPLGSQGAGRDLI 227 (322)
Q Consensus 152 ~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~----~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl~~~G~l~~~~ 227 (322)
+++....++..+-=++.+.+.+.++.+...-++. .+.+-+--..++..+.++|++.++-++.-+.- --
T Consensus 148 ~~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~--------Ss 219 (647)
T PRK00087 148 EKLPFDKKICVVSQTTEKQENFEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKN--------SS 219 (647)
T ss_pred hhCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCC--------Cc
Confidence 3343345666666667777777666665332211 12222222223477999998888877763333 22
Q ss_pred CCHHHHHHHHhcCC------CHHHHHHHHhhhcC-CEEecCCCCHHHHHHhH
Q 041428 228 HDPTVERIAKKLNK------SPGQILLKWGIHRG-TSVIPKSTHPDRIKENI 272 (322)
Q Consensus 228 ~~~~l~~la~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~~nl 272 (322)
...+|.++|++.|. ++.++...|..... +.+..|+|+|+.+-+.+
T Consensus 220 Nt~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~v 271 (647)
T PRK00087 220 NTTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEEV 271 (647)
T ss_pred cHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHHH
Confidence 45789999998873 67899999988766 78889999999875553
No 95
>PRK07534 methionine synthase I; Validated
Probab=43.48 E-value=2.8e+02 Score=25.91 Aligned_cols=216 Identities=13% Similarity=0.099 Sum_probs=114.9
Q ss_pred ccCC-hhHHHHHHHHHHHcCCCeEecCCCcCCHHH---------HHHHHHHHHh----c-CCCCCcEEEEecCCCC----
Q 041428 32 WKSG-DEAFKSVFTAIVEGGYRHIDTAKQYGVQEN---------IGLALKEAMQ----T-GIQRKDLFVTSKLWCA---- 92 (322)
Q Consensus 32 ~~~~-~~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~---------lG~~l~~~~~----~-~~~R~~~~i~tK~~~~---- 92 (322)
|..+ ++...++-+..+++|-+.+=|.....+-.. +-+.++..++ . .....+++|+-=+++.
T Consensus 39 wsi~~Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l 118 (336)
T PRK07534 39 WNEDHPDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIM 118 (336)
T ss_pred hcccCHHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCcccc
Confidence 4433 344555555667999999986554223111 1111111100 0 0012356777777432
Q ss_pred ----CCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCC
Q 041428 93 ----DLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNF 168 (322)
Q Consensus 93 ----~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~ 168 (322)
+.+.+.+......-++.|--..+|++++-.. ....|+..+++-+++.|+=-.+.++-.
T Consensus 119 ~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~------------------p~l~E~~a~~~~~~~~~~Pv~vSft~~ 180 (336)
T PRK07534 119 EPMGALTHALAVEAFHEQAEGLKAGGADVLWVETI------------------SAPEEIRAAAEAAKLAGMPWCGTMSFD 180 (336)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc------------------CCHHHHHHHHHHHHHcCCeEEEEEEEC
Confidence 2356678888888888885456999998753 345677777777777777555555532
Q ss_pred C---------HHHHHHHHhhcCCCCceeceeeCC-CCCc-HHHHHHHHHc-CceEEEeccCCCCCCCCCCCCCHHHHHHH
Q 041428 169 T---------LKKLNKLLNFAKTKPSVCQMEMHP-GWRN-DKILEACKKN-GIHVTAYSPLGSQGAGRDLIHDPTVERIA 236 (322)
Q Consensus 169 ~---------~~~l~~~~~~~~~~~~~~q~~~~~-~~~~-~~ll~~~~~~-gi~via~~pl~~~G~l~~~~~~~~l~~la 236 (322)
+ ...+...++.....++++-+++.. ...- ..++...... ++.+++|.-- |. +.+.....
T Consensus 181 ~~g~l~~G~~~~~~~~~~~~~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyPNa---G~-p~~~~~~~----- 251 (336)
T PRK07534 181 TAGRTMMGLTPADLADLVEKLGEPPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAKGNA---GI-PKYVDGHI----- 251 (336)
T ss_pred CCCeeCCCCcHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEcCC---CC-cccCCCcc-----
Confidence 2 223333333222234666666653 1111 3344444433 5677776543 32 11211111
Q ss_pred HhcCCC---HHHHHHHHhhhcCCEEecCC--CCHHHHHHhHhccC
Q 041428 237 KKLNKS---PGQILLKWGIHRGTSVIPKS--THPDRIKENIKAFG 276 (322)
Q Consensus 237 ~~~~~s---~~qlal~~~l~~~~~~i~g~--~~~~~l~~nl~a~~ 276 (322)
.+..+ .++.+-.|. ..|..+|=|+ ++|+|+++..++++
T Consensus 252 -~~~~~p~~~~~~~~~~~-~~Ga~iIGGCCGTtP~hI~~la~~l~ 294 (336)
T PRK07534 252 -HYDGTPELMAEYAVLAR-DAGARIIGGCCGTMPEHLAAMRAALD 294 (336)
T ss_pred -ccCCCHHHHHHHHHHHH-HcCCcEEeeecCCCHHHHHHHHHHHc
Confidence 12223 345566663 4466665555 89999988887765
No 96
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=43.37 E-value=1.8e+02 Score=27.03 Aligned_cols=123 Identities=15% Similarity=0.263 Sum_probs=66.5
Q ss_pred ccHHHHHHHHHHHHHcCCccEEEecC-----CCHHHHHHHHhhcCCC-Cceecee-----------eCCCCCcHHHHHHH
Q 041428 142 FDMEGVWREMEKLVKDGLVRDVGVCN-----FTLKKLNKLLNFAKTK-PSVCQME-----------MHPGWRNDKILEAC 204 (322)
Q Consensus 142 ~~~~~~~~~L~~l~~~Gkir~iGvs~-----~~~~~l~~~~~~~~~~-~~~~q~~-----------~~~~~~~~~ll~~~ 204 (322)
.+.+++.+.+.++++.| ++.|.+.+ ...+.+.++++..+.. +.+ ++. .+......+.+...
T Consensus 70 ls~eeI~e~~~~~~~~G-~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i-~~~~~t~~ei~~~~~~~g~~~~e~l~~L 147 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAG-ATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGM-HIHAFSPMEVYYGARNSGLSVEEALKRL 147 (343)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCc-eEEecCHHHHHHHHHHcCCCHHHHHHHH
Confidence 56789999999999987 77777762 2344444444432211 111 111 12222347888999
Q ss_pred HHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHH--HHHHHHhhhcC----CEEecCC-CCHHHHHHhHhc
Q 041428 205 KKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPG--QILLKWGIHRG----TSVIPKS-THPDRIKENIKA 274 (322)
Q Consensus 205 ~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~--qlal~~~l~~~----~~~i~g~-~~~~~l~~nl~a 274 (322)
++.|+.-+. .. | .+.+..+..+.++... .+.. --+++++...| ...|+|. .+.++..+.+..
T Consensus 148 keAGl~~i~----~~-~--~E~~~~~v~~~i~~~~-~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~ 216 (343)
T TIGR03551 148 KEAGLDSMP----GT-A--AEILDDEVRKVICPDK-LSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLI 216 (343)
T ss_pred HHhCccccc----Cc-c--hhhcCHHHHHhcCCCC-CCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHH
Confidence 998887653 11 2 2344444445554321 1221 23555666555 5567774 566666655433
No 97
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=43.32 E-value=2.3e+02 Score=24.78 Aligned_cols=175 Identities=13% Similarity=0.063 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHHcCCCeEecCCCcCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCCcc
Q 041428 36 DEAFKSVFTAIVEGGYRHIDTAKQYGVQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQLDYL 115 (322)
Q Consensus 36 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~i 115 (322)
.....+++..|.+.|+..|=.+++...........+.. . ++-|.+-+-.....++.+. ..+++. ...+
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~~-----~--~i~Il~GiEi~~~~~~~~~----~~~~~~-~~~~ 82 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKPELEDL-----L--GFEIFRGVEIVASNPSKLR----GLVGKF-RKKV 82 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHHh-----c--CCcEEeeEEEecCCHHHHH----HHHHhc-cCcc
Confidence 34567999999999999887777753211111111111 1 2223222211112233332 333332 2357
Q ss_pred ceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCC---CHHHHHHHHhhcCCCCceeceeeC
Q 041428 116 DLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNF---TLKKLNKLLNFAKTKPSVCQMEMH 192 (322)
Q Consensus 116 Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~---~~~~l~~~~~~~~~~~~~~q~~~~ 192 (322)
|++.+|. . . +.+. ....+.+.+.-||--.. ....-+.+++.+..+-.++.++++
T Consensus 83 d~v~v~~-~------------------~-~~~~---~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lEIn~s 139 (237)
T PRK00912 83 DVLAVHG-G------------------D-EKVN---RAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIEFNLR 139 (237)
T ss_pred cEEEEeC-C------------------C-HHHH---HHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEEEEch
Confidence 8888882 1 1 1222 35777888888876532 111111222222111235556665
Q ss_pred CCCC-----------c-HHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHHHH
Q 041428 193 PGWR-----------N-DKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQILL 248 (322)
Q Consensus 193 ~~~~-----------~-~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~qlal 248 (322)
++.. + ..++..|++.|+.++.-|--... ..+-.......++...|.+..++--
T Consensus 140 ~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~~---~~l~~~~~~~~l~~~~Gl~~~~~~~ 204 (237)
T PRK00912 140 DILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMSC---YDLRSPREMIALAELFGMEEDEALK 204 (237)
T ss_pred HhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcc---cccCCHHHHHHHHHHcCCCHHHHHH
Confidence 4321 1 46899999999888765433220 1222345667778888876655433
No 98
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=43.08 E-value=2.4e+02 Score=25.06 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=28.8
Q ss_pred EcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCeEecC
Q 041428 17 KLLSGHTIPAVGLGTWKSGDEAFKSVFTAIVEGGYRHIDTA 57 (322)
Q Consensus 17 ~l~tg~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DTA 57 (322)
+|++|.+.+.. .++.++..++++...+.||..++..
T Consensus 7 TlRDG~Q~~~~-----~~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 7 TLRDGMHAVRH-----QFTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred CCCcCcccCCe-----ecCHHHHHHHHHHHHHcCCCEEEee
Confidence 56778776443 4566888899999999999999997
No 99
>PRK10060 RNase II stability modulator; Provisional
Probab=42.65 E-value=1.5e+02 Score=30.31 Aligned_cols=114 Identities=16% Similarity=0.141 Sum_probs=71.4
Q ss_pred cEEEEecCCCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCcc
Q 041428 82 DLFVTSKLWCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVR 161 (322)
Q Consensus 82 ~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir 161 (322)
.+.|+..+....+....+...+.+.|++.+.. ...+.+--.+... -.....+.+.+.+|++.|-
T Consensus 492 ~~~i~vNls~~~l~~~~~~~~l~~~l~~~~~~-~~~l~lEitE~~~-------------~~~~~~~~~~l~~L~~~G~-- 555 (663)
T PRK10060 492 NLRVAVNVSARQLADQTIFTALKQALQELNFE-YCPIDVELTESCL-------------IENEELALSVIQQFSQLGA-- 555 (663)
T ss_pred CeEEEEEcCHHHhCCCcHHHHHHHHHHHHCcC-cceEEEEECCchh-------------hcCHHHHHHHHHHHHHCCC--
Confidence 45666666555555567888888889888865 3444443332211 1235678889999999997
Q ss_pred EEEecCCC--HHHHHHHHhhcCCCCceeceeeCCC--------CCc--HHHHHHHHHcCceEEEe
Q 041428 162 DVGVCNFT--LKKLNKLLNFAKTKPSVCQMEMHPG--------WRN--DKILEACKKNGIHVTAY 214 (322)
Q Consensus 162 ~iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~~~--------~~~--~~ll~~~~~~gi~via~ 214 (322)
.|++.+|. ...+..+.. .+++.+-+.-+.. .+. ..++..|++.|+.|+|=
T Consensus 556 ~ialDdfGtg~ssl~~L~~---l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAe 617 (663)
T PRK10060 556 QVHLDDFGTGYSSLSQLAR---FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAE 617 (663)
T ss_pred EEEEECCCCchhhHHHHHh---CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEe
Confidence 47777775 334444433 3445544443221 122 67899999999999983
No 100
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=42.52 E-value=1.2e+02 Score=26.23 Aligned_cols=61 Identities=15% Similarity=0.235 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCccEEEecCC-CHHHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEE
Q 041428 146 GVWREMEKLVKDGLVRDVGVCNF-TLKKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTA 213 (322)
Q Consensus 146 ~~~~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via 213 (322)
+..+.+++++++..=-.||..+. +.++++.+++.+. ++-.+|.. +.+++++|+++|+.++.
T Consensus 45 ~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA------~FivsP~~-~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 45 VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA------QFIVSPGL-TPELAKHAQDHGIPIIP 106 (204)
T ss_pred cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC------CEEECCCC-CHHHHHHHHHcCCcEEC
Confidence 45555666666543356898877 6888888888654 22234432 47999999999998876
No 101
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=42.09 E-value=3.2e+02 Score=26.25 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=57.9
Q ss_pred ChhHHHHHHHHHHHcCCCeE-ecCCCcCCHHHHHHHHHHHHhcCCCCCcEEEEecC----------CCCCCChHHHHHHH
Q 041428 35 GDEAFKSVFTAIVEGGYRHI-DTAKQYGVQENIGLALKEAMQTGIQRKDLFVTSKL----------WCADLSPDRVRSAL 103 (322)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~-DTA~~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~----------~~~~~~~~~i~~~~ 103 (322)
+.++-.+-++.|++.|...+ |-+ ..|.-..+-+.+-+ ...+-|.|=- ...+.+++.+.+.+
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLS-tGgdl~~iR~~il~-------~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~i 146 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLS-TGGDLDEIRKAILD-------AVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAI 146 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHH-------cCCCCccCccHHHHHHHhcCChhhCCHHHHHHHH
Confidence 33444566799999998644 443 33433223333221 1112222210 12356777777777
Q ss_pred HHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHH
Q 041428 104 NNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKK 172 (322)
Q Consensus 104 ~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~ 172 (322)
++-.+ +-+|++-+|.- -..+.++.+++.|++ .||-+-...-
T Consensus 147 e~qa~----dGVDfmTiH~G----------------------i~~~~~~~~~~~~R~--~giVSRGGs~ 187 (423)
T TIGR00190 147 EKQAK----DGVDFMTIHAG----------------------VLLEYVERLKRSGRI--TGIVSRGGAI 187 (423)
T ss_pred HHHHH----hCCCEEEEccc----------------------hhHHHHHHHHhCCCc--cCeecCcHHH
Confidence 66554 67899999972 345668889998854 6666655433
No 102
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=42.00 E-value=2.4e+02 Score=27.03 Aligned_cols=127 Identities=18% Similarity=0.240 Sum_probs=64.8
Q ss_pred cccccHHHHHHHHHHHHHcCCccEEEecC-----CC-----HHHHHHHHhhcCCCCceeceeeCCCC---CcHHHHHHHH
Q 041428 139 VLEFDMEGVWREMEKLVKDGLVRDVGVCN-----FT-----LKKLNKLLNFAKTKPSVCQMEMHPGW---RNDKILEACK 205 (322)
Q Consensus 139 ~~~~~~~~~~~~L~~l~~~Gkir~iGvs~-----~~-----~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~ll~~~~ 205 (322)
.-..+.+.+.+.++.+++.| ++.|-+.+ |. ...+.++++.....+....+.++-.. -..++++..+
T Consensus 164 ~r~r~~e~I~~Ei~~l~~~g-~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~ 242 (414)
T TIGR01579 164 SRSVPMEAILKQVKILVAKG-YKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAIA 242 (414)
T ss_pred CccCCHHHHHHHHHHHHHCC-CceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHHH
Confidence 33467899999999999987 56665432 21 12344444432111111122332222 2378889888
Q ss_pred HcC--ceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhh--cC----CEEecCC--CCHHHHHHhHhc
Q 041428 206 KNG--IHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQILLKWGIH--RG----TSVIPKS--THPDRIKENIKA 274 (322)
Q Consensus 206 ~~g--i~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~qlal~~~l~--~~----~~~i~g~--~~~~~l~~nl~a 274 (322)
+.| ...+. -++-+ | .++.++.+.+.+......-+++.+.+ .+ ...|+|. .+.+.+.+.++.
T Consensus 243 ~~~~~~~~l~-lglES-g------s~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~ 313 (414)
T TIGR01579 243 SEKRLCPHLH-LSLQS-G------SDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRM 313 (414)
T ss_pred hcCccCCCeE-ECCCc-C------ChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHH
Confidence 765 22222 23322 2 34555555544443333445555555 33 3356663 666666666544
No 103
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=41.73 E-value=1.4e+02 Score=27.94 Aligned_cols=68 Identities=10% Similarity=0.108 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhhcCCCCceeceeeCCC---CCcHHHHHHHHHcCceEEEec
Q 041428 146 GVWREMEKLVKDGLVR-DVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPG---WRNDKILEACKKNGIHVTAYS 215 (322)
Q Consensus 146 ~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~ 215 (322)
+-++.+.+|++..-+. +.|=|.++...+..+++...+ +++|...... .....+..+|+++|+.++.++
T Consensus 214 ~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~--d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 214 ENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAV--DIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred cCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCC--CEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 3467788887775554 444555677888887765443 6777765333 222678889999999988655
No 104
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=41.21 E-value=2.1e+02 Score=24.82 Aligned_cols=79 Identities=9% Similarity=0.128 Sum_probs=52.5
Q ss_pred eecccCChhHHHHHHHHHHHcCCCeEecCCCcC-CHHHHH--HHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHH
Q 041428 29 LGTWKSGDEAFKSVFTAIVEGGYRHIDTAKQYG-VQENIG--LALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNN 105 (322)
Q Consensus 29 lG~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~e~~lG--~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~ 105 (322)
+-+...++++...+.+.|.++|..|+=|+..|+ .-..++ +.+++.+ ++ -+-.|....-.+.+...+-++.
T Consensus 124 lE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v-----~~--~v~IKaaGGirt~~~a~~~i~a 196 (211)
T TIGR00126 124 IETGLLTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTV-----GD--TIGVKASGGVRTAEDAIAMIEA 196 (211)
T ss_pred EecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHh-----cc--CCeEEEeCCCCCHHHHHHHHHH
Confidence 444446667888999999999999999998886 111111 2344332 12 1344553233377889999999
Q ss_pred HHHHhCCCc
Q 041428 106 TLQELQLDY 114 (322)
Q Consensus 106 SL~~Lg~d~ 114 (322)
--.|+|+++
T Consensus 197 Ga~riGts~ 205 (211)
T TIGR00126 197 GASRIGASA 205 (211)
T ss_pred hhHHhCcch
Confidence 999999875
No 105
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=41.17 E-value=3.5e+02 Score=26.33 Aligned_cols=123 Identities=14% Similarity=0.121 Sum_probs=66.6
Q ss_pred ChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCC--C-CC-CCCccccccHHHHHHHHHHHHH-----cCCccEEEe
Q 041428 95 SPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGAS--R-PP-KDGEVLEFDMEGVWREMEKLVK-----DGLVRDVGV 165 (322)
Q Consensus 95 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~--~-~~-~~~~~~~~~~~~~~~~L~~l~~-----~Gkir~iGv 165 (322)
.+..+.....+.++.-..+.--.++||-|.....=.. | .. .+........+.+.+.++...+ .+.++.|=+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~ 120 (449)
T PRK09058 41 PAEQLAATWQRLTQQTLRARKRLLYIHIPFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYF 120 (449)
T ss_pred ChHHHHHHHHHHHhhcCCCCceEEEEEeCCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEE
Confidence 4466777777776432222334688999976433111 1 00 0011101123344445554433 245666633
Q ss_pred c-----CCCHHHHHHHHhhcC----CCCc-eeceeeCCCCCcHHHHHHHHHcCceEEEeccC
Q 041428 166 C-----NFTLKKLNKLLNFAK----TKPS-VCQMEMHPGWRNDKILEACKKNGIHVTAYSPL 217 (322)
Q Consensus 166 s-----~~~~~~l~~~~~~~~----~~~~-~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl 217 (322)
. ..+++++.++++... ...+ -+-++.++..-..+.+..+++.|+.-+..+.-
T Consensus 121 GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQ 182 (449)
T PRK09058 121 GGGTPTALSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQ 182 (449)
T ss_pred CCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCC
Confidence 2 335678877776543 1111 24455666656688999999999998886654
No 106
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=41.16 E-value=2.6e+02 Score=24.93 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=61.9
Q ss_pred CChHHHHHHHHHHHHHhCCCccceeE-eecCCCCCCCCCCCCCCCccccccHH----HHHHHHHHHHHc-CCccEEEecC
Q 041428 94 LSPDRVRSALNNTLQELQLDYLDLYL-IHWPFRLKEGASRPPKDGEVLEFDME----GVWREMEKLVKD-GLVRDVGVCN 167 (322)
Q Consensus 94 ~~~~~i~~~~~~SL~~Lg~d~iDl~~-lH~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~~l~~~-Gkir~iGvs~ 167 (322)
.+++.+.+..++-+ .-|.+.||+=- --+|... ..+.+ .+...++.+++. +. -+.+-+
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~--------------~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT 82 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGAD--------------RVSPEEELNRVVPVIKALRDQPDV--PISVDT 82 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCC--------------CCCHHHHHHHHHHHHHHHHhcCCC--eEEEeC
Confidence 34555555555443 55889999921 1112110 01222 255566666665 43 389999
Q ss_pred CCHHHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEEecc
Q 041428 168 FTLKKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSP 216 (322)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~p 216 (322)
++++.++++++.+. ..++-+.. .. ..++++.++++|..++.+.-
T Consensus 83 ~~~~vi~~al~~G~--~iINsis~--~~-~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 83 YRAEVARAALEAGA--DIINDVSG--GQ-DPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred CCHHHHHHHHHcCC--CEEEECCC--CC-CchhHHHHHHcCCcEEEEeC
Confidence 99999999998842 23444433 22 46799999999999999653
No 107
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=40.70 E-value=3.8e+02 Score=26.65 Aligned_cols=163 Identities=15% Similarity=0.112 Sum_probs=78.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhC-CCccceeEeecCCCCCCCCCCCCCCCc
Q 041428 60 YGVQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQ-LDYLDLYLIHWPFRLKEGASRPPKDGE 138 (322)
Q Consensus 60 Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~~~ 138 (322)
+|.++.+-++|++..+. .+.+=++|.|-+ .++-|-..++...+.++ ...++++.+|.|........
T Consensus 67 ~Gg~~kL~~~I~~~~~~-~~P~~I~V~tTC-----~~eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~g~~~~------- 133 (513)
T CHL00076 67 RGSQEKVVDNITRKDKE-ERPDLIVLTPTC-----TSSILQEDLQNFVDRASIESDSDVILADVNHYRVNELQ------- 133 (513)
T ss_pred cchHHHHHHHHHHHHHh-cCCCEEEECCCC-----chhhhhcCHHHHHHHhhcccCCCEEEeCCCCCcccHHH-------
Confidence 36666666677654321 244455566555 22333333333333333 12378999999865422000
Q ss_pred cccccHHHHHHHHHH-----------HHHcCCccEEEecC------CCHHHHHHHHhhcCCCCcee--------------
Q 041428 139 VLEFDMEGVWREMEK-----------LVKDGLVRDVGVCN------FTLKKLNKLLNFAKTKPSVC-------------- 187 (322)
Q Consensus 139 ~~~~~~~~~~~~L~~-----------l~~~Gkir~iGvs~------~~~~~l~~~~~~~~~~~~~~-------------- 187 (322)
-.+.....+++.+.+ -...++|--||.++ .+...+.++++..++.+.++
T Consensus 134 g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~~ 213 (513)
T CHL00076 134 AADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNLP 213 (513)
T ss_pred HHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcc
Confidence 000011222222211 01345688888774 24577888888766533211
Q ss_pred ceeeCCCC-Cc--HHHHHHHH-HcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCC
Q 041428 188 QMEMHPGW-RN--DKILEACK-KNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNK 241 (322)
Q Consensus 188 q~~~~~~~-~~--~~ll~~~~-~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~ 241 (322)
...+|+.. +. ..+.++.+ +.|++.+...|+|- --..+.++++++..|.
T Consensus 214 ~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiGi------~~T~~fLr~la~~lg~ 265 (513)
T CHL00076 214 KAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMGI------VDTAECIRQIQKILNK 265 (513)
T ss_pred cCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCCH------HHHHHHHHHHHHHhCC
Confidence 11122222 11 23445544 45999888788753 1123455666665554
No 108
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=40.64 E-value=1.5e+02 Score=25.87 Aligned_cols=51 Identities=14% Similarity=-0.076 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCC-------HHHHHHHHhhcCCCCceeceeeCCCC
Q 041428 145 EGVWREMEKLVKDGLVRDVGVCNFT-------LKKLNKLLNFAKTKPSVCQMEMHPGW 195 (322)
Q Consensus 145 ~~~~~~L~~l~~~Gkir~iGvs~~~-------~~~l~~~~~~~~~~~~~~q~~~~~~~ 195 (322)
..=.++-.+|.+.|||+++=+|.-+ +..+.+.+...+++...+-..|--+.
T Consensus 79 ~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFr 136 (235)
T COG2949 79 TYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFR 136 (235)
T ss_pred HHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCcc
Confidence 4456778899999999999988764 45566655566676655555554443
No 109
>PRK14017 galactonate dehydratase; Provisional
Probab=39.47 E-value=1.5e+02 Score=28.16 Aligned_cols=68 Identities=12% Similarity=0.179 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhhcCCCCceeceeeCCCC---CcHHHHHHHHHcCceEEEeccC
Q 041428 148 WREMEKLVKDGLVR-DVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGW---RNDKILEACKKNGIHVTAYSPL 217 (322)
Q Consensus 148 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~ll~~~~~~gi~via~~pl 217 (322)
++.+.+|++...+. ..|=|-++...+..+++.... +++|+.....- +...+.++|+++|+.++.++..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~--d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGV--DIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCC--CeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 56788888877665 455566788888888887543 77777655432 2378999999999999887643
No 110
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=39.32 E-value=1.2e+02 Score=27.56 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 041428 98 RVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKLNKLL 177 (322)
Q Consensus 98 ~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~ 177 (322)
.-+..+-+.|.++|+++|.+-..+.|.... ...+.++.+..+.+...++..++. .+...++.++
T Consensus 26 e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p---------------~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~ 89 (287)
T PRK05692 26 ADKIALIDRLSAAGLSYIEVASFVSPKWVP---------------QMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAAL 89 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCcCccccc---------------ccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHH
Confidence 344556677999999999986444443211 112235555555544446555554 4677888887
Q ss_pred hhcCCCCceece--eeCCC-------CCc-------HHHHHHHHHcCceEEE
Q 041428 178 NFAKTKPSVCQM--EMHPG-------WRN-------DKILEACKKNGIHVTA 213 (322)
Q Consensus 178 ~~~~~~~~~~q~--~~~~~-------~~~-------~~ll~~~~~~gi~via 213 (322)
+.+. +.+.+ ..|.. ... .+.+++++++|+.+.+
T Consensus 90 ~~g~---~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 90 AAGA---DEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred HcCC---CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 7533 22222 22211 111 4689999999998863
No 111
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=39.28 E-value=92 Score=27.74 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHcCCCeEecCCCcC--CHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC------CChHHHHHHHHHHH
Q 041428 36 DEAFKSVFTAIVEGGYRHIDTAKQYG--VQENIGLALKEAMQTGIQRKDLFVTSKLWCAD------LSPDRVRSALNNTL 107 (322)
Q Consensus 36 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg--~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~------~~~~~i~~~~~~SL 107 (322)
+....+.++.|-+.|++.+..++.+- +++..-+.++.. ....+.+.+-++..+ .+++.+.+.+++-|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~-----~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dL 157 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA-----KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRDL 157 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH-----CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHHH
T ss_pred cChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH-----HHCCCEEeecccCCCchhcccCCHHHHHHHHHHHH
Confidence 44567888899999999999988876 566667778776 455588888876432 34667777777777
Q ss_pred HHhCCCccceeEeec
Q 041428 108 QELQLDYLDLYLIHW 122 (322)
Q Consensus 108 ~~Lg~d~iDl~~lH~ 122 (322)
+. | .|.+++..
T Consensus 158 eA-G---A~~ViiEa 168 (244)
T PF02679_consen 158 EA-G---ADKVIIEA 168 (244)
T ss_dssp HH-T---ECEEEE--
T ss_pred HC-C---CCEEEEee
Confidence 65 4 67777754
No 112
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=39.28 E-value=3.3e+02 Score=25.48 Aligned_cols=137 Identities=12% Similarity=0.175 Sum_probs=75.5
Q ss_pred CChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 041428 94 LSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKL 173 (322)
Q Consensus 94 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l 173 (322)
.+++.|.+.+++. ...|...+.+..-+.|+ .+.+.+.+.+..+++.. -.+-+..+++..+
T Consensus 79 l~~eeI~~~a~~~-~~~G~~~v~l~~G~~p~-----------------~~~~~~~e~i~~Ik~~~--p~i~i~~~~~~ei 138 (351)
T TIGR03700 79 MSLEEIVARVKEA-YAPGATEVHIVGGLHPN-----------------LPFEWYLDMIRTLKEAY--PDLHVKAFTAVEI 138 (351)
T ss_pred CCHHHHHHHHHHH-HHCCCcEEEEecCCCCC-----------------CCHHHHHHHHHHHHHHC--CCceEEeCCHHHH
Confidence 3566666666643 45777777765444332 23456666677777664 2344555555555
Q ss_pred HHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHH--HHHHh
Q 041428 174 NKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQI--LLKWG 251 (322)
Q Consensus 174 ~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~ql--al~~~ 251 (322)
..+....+. ...+.+...++.|+..+... | .+.+..+.+..++.. +.+..+. +++++
T Consensus 139 ~~~~~~~g~-------------~~~e~l~~LkeAGld~~~~~-----g--~E~~~~~v~~~i~~~-~~~~~~~l~~i~~a 197 (351)
T TIGR03700 139 HHFSKISGL-------------PTEEVLDELKEAGLDSMPGG-----G--AEIFAEEVRQQICPE-KISAERWLEIHRTA 197 (351)
T ss_pred HHHHHHcCC-------------CHHHHHHHHHHcCCCcCCCC-----c--ccccCHHHHhhcCCC-CCCHHHHHHHHHHH
Confidence 544433221 33677888888888765422 1 133444555555543 3345552 67777
Q ss_pred hhcC----CEEecCC-CCHHHHHHh
Q 041428 252 IHRG----TSVIPKS-THPDRIKEN 271 (322)
Q Consensus 252 l~~~----~~~i~g~-~~~~~l~~n 271 (322)
...| +..++|. .+.++..+.
T Consensus 198 ~~~Gi~~~sg~i~GlgEt~edrv~~ 222 (351)
T TIGR03700 198 HELGLKTNATMLYGHIETPAHRVDH 222 (351)
T ss_pred HHcCCCcceEEEeeCCCCHHHHHHH
Confidence 7766 5567776 244443333
No 113
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=39.06 E-value=2.9e+02 Score=24.77 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=30.4
Q ss_pred EcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCeEecCC
Q 041428 17 KLLSGHTIPAVGLGTWKSGDEAFKSVFTAIVEGGYRHIDTAK 58 (322)
Q Consensus 17 ~l~tg~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DTA~ 58 (322)
+|++|.+.+.+.| +.++..++++...+.||..|+...
T Consensus 7 TLRDG~Q~~~~~~-----s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 7 TLREGEQFANAFF-----DTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCCCcCcCCCCCC-----CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 5788888887654 458888999999999999999864
No 114
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=38.92 E-value=2.5e+02 Score=24.14 Aligned_cols=122 Identities=11% Similarity=0.109 Sum_probs=62.9
Q ss_pred ccCChhHHHHHHHHHHHcCCCeEecCCCcCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhC
Q 041428 32 WKSGDEAFKSVFTAIVEGGYRHIDTAKQYGVQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQ 111 (322)
Q Consensus 32 ~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg 111 (322)
+..++++..+++..+++.|+.++|.--....+. +....... ..+.+++++.-.+....+.+.+...+++.. .+|
T Consensus 70 ~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~~~-~~~~~~~~----~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~-~~g 143 (224)
T PF01487_consen 70 FQGSEEEYLELLERAIRLGPDYIDIELDLFPDD-LKSRLAAR----KGGTKIILSYHDFEKTPSWEELIELLEEMQ-ELG 143 (224)
T ss_dssp BSS-HHHHHHHHHHHHHHTSSEEEEEGGCCHHH-HHHHHHHH----HTTSEEEEEEEESS---THHHHHHHHHHHH-HTT
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEEcccchhH-HHHHHHHh----hCCCeEEEEeccCCCCCCHHHHHHHHHHHH-hcC
Confidence 346678889999999999999999755532222 22122111 146667776664333334444555444443 666
Q ss_pred CCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 041428 112 LDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKLNKL 176 (322)
Q Consensus 112 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~ 176 (322)
.| ++=+=..... ..+...+++...++++.-.+.-|+++.=....+-++
T Consensus 144 ad---ivKia~~~~~--------------~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi 191 (224)
T PF01487_consen 144 AD---IVKIAVMANS--------------PEDVLRLLRFTKEFREEPDIPVIAISMGELGRISRI 191 (224)
T ss_dssp -S---EEEEEEE-SS--------------HHHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHHH
T ss_pred CC---eEEEEeccCC--------------HHHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHHH
Confidence 54 4433221111 123455666667776543445555554444444443
No 115
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=38.92 E-value=1.8e+02 Score=30.55 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=44.8
Q ss_pred HHHHHHHHH--HHHHcCCccEEEecCCCHHHHHHH----------------HhhcCCCCceeceeeCCCCCcHHHHHHHH
Q 041428 144 MEGVWREME--KLVKDGLVRDVGVCNFTLKKLNKL----------------LNFAKTKPSVCQMEMHPGWRNDKILEACK 205 (322)
Q Consensus 144 ~~~~~~~L~--~l~~~Gkir~iGvs~~~~~~l~~~----------------~~~~~~~~~~~q~~~~~~~~~~~ll~~~~ 205 (322)
...+.+.++ +|.++ |.-+|++....+.+ +. +..+-+ +++-+.++-.. .++.+.|+
T Consensus 246 ~~~iv~~~~~~~l~~~--I~l~GiCCTg~e~~-R~~~gv~~~Gn~~~qe~~i~TGav--D~~VvD~QCi~--p~l~~~a~ 318 (784)
T TIGR00314 246 GRPIADYLEENGMEDE--VELCGICCTAIDMT-RYNAKAKIVGPLSRQLRVIRAGVA--DVIIVDEQCIR--ADILEECK 318 (784)
T ss_pred HHHHHHHHhChhHHHH--hceeeeeccccHHh-hhccCCcccCcHHHHHHHHHcCCC--cEEEEecccCc--ccHHHHHH
Confidence 456666666 55555 87788887765533 22 111212 33333222221 57999999
Q ss_pred HcCceEEEeccCCCCCC
Q 041428 206 KNGIHVTAYSPLGSQGA 222 (322)
Q Consensus 206 ~~gi~via~~pl~~~G~ 222 (322)
..+..+|+.++....|+
T Consensus 319 c~~tklItTs~ka~~gl 335 (784)
T TIGR00314 319 KMGIPLIATNDKACLGL 335 (784)
T ss_pred hcCCeEEEcchHHhcCC
Confidence 99999999999887664
No 116
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=38.73 E-value=1.7e+02 Score=27.89 Aligned_cols=69 Identities=9% Similarity=0.067 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhhcCCCCceeceeeCCCC---CcHHHHHHHHHcCceEEEeccC
Q 041428 147 VWREMEKLVKDGLVR-DVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGW---RNDKILEACKKNGIHVTAYSPL 217 (322)
Q Consensus 147 ~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~ll~~~~~~gi~via~~pl 217 (322)
-++.+.+|++...+- ..|=|-++..++.++++... .+++|......- ...++..+|+++|+.++.++..
T Consensus 249 d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~a--vdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 249 GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNA--VDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCC--CcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 467788888877665 55666667788888887654 377777654332 3378999999999999887764
No 117
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=38.72 E-value=2.9e+02 Score=24.74 Aligned_cols=102 Identities=18% Similarity=0.077 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHHH
Q 041428 95 SPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKLN 174 (322)
Q Consensus 95 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~ 174 (322)
+++.+.+..++- ..-|-+.||+=.= +.. ....+.+...++.+++.-.+ -+.|-+++++.++
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~---------------~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~e 83 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAG--TAV---------------EEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIE 83 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC--CCc---------------hhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHH
Confidence 455555555443 3668899998531 100 01134455556666554232 3899999999999
Q ss_pred HHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEEecc
Q 041428 175 KLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSP 216 (322)
Q Consensus 175 ~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~p 216 (322)
++++...-.+.+|-+.... .+...+++.++++|+.+++..-
T Consensus 84 aaL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 84 AGLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred HHHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEec
Confidence 9999843233444433211 1236789999999999998653
No 118
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=38.21 E-value=3e+02 Score=24.72 Aligned_cols=153 Identities=16% Similarity=0.224 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHcCCCeEecCCCcCC---HHH--HHHHHHHHHhcCCCCCcE-EEEecCCCCCCChHHHHHHHHHHHHHh
Q 041428 37 EAFKSVFTAIVEGGYRHIDTAKQYGV---QEN--IGLALKEAMQTGIQRKDL-FVTSKLWCADLSPDRVRSALNNTLQEL 110 (322)
Q Consensus 37 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~---e~~--lG~~l~~~~~~~~~R~~~-~i~tK~~~~~~~~~~i~~~~~~SL~~L 110 (322)
+...+.++..-+.|+.+|..++.-|. ... +...|++. .| -+-+ +++.. +.+...+...+... ..+
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~--~g--~~~i~Hlt~r----~~n~~~l~~~L~~~-~~~ 85 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKE--TG--IPTVPHLTCI----GATREEIREILREY-REL 85 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHh--cC--CCeeEEeeec----CCCHHHHHHHHHHH-HHC
Confidence 34455566666779999999988662 222 33334421 02 1222 22222 45666677776644 777
Q ss_pred CCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHc-CCccEEEecCCCH---------HHHHHHHhhc
Q 041428 111 QLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKD-GLVRDVGVCNFTL---------KKLNKLLNFA 180 (322)
Q Consensus 111 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-Gkir~iGvs~~~~---------~~l~~~~~~~ 180 (322)
|++ +++.|-.- +...+. +.. ...+ ....+.++-+++. |. -+||+..+.- ..+..+.+..
T Consensus 86 Gi~--nvL~l~GD-~~~~~~--~~~-~~~f----~~a~~Li~~i~~~~~~-f~ig~a~~Peghp~~~~~~~~~~~L~~K~ 154 (272)
T TIGR00676 86 GIR--HILALRGD-PPKGEG--TPT-PGGF----NYASELVEFIRNEFGD-FDIGVAAYPEKHPEAPNLEEDIENLKRKV 154 (272)
T ss_pred CCC--EEEEeCCC-CCCCCC--CCC-CCCC----CCHHHHHHHHHHhcCC-eeEEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence 743 34445432 211110 000 1111 1344444444443 33 5788887531 2334343332
Q ss_pred --CCCCceeceeeCCCCCc-HHHHHHHHHcCceE
Q 041428 181 --KTKPSVCQMEMHPGWRN-DKILEACKKNGIHV 211 (322)
Q Consensus 181 --~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~v 211 (322)
+..+.+-|.-|+. .. .+.++.|++.|+.+
T Consensus 155 ~aGA~f~iTQ~~fd~--~~~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 155 DAGADYAITQLFFDN--DDYYRFVDRCRAAGIDV 186 (272)
T ss_pred HcCCCeEeeccccCH--HHHHHHHHHHHHcCCCC
Confidence 2333444444321 22 67888999998765
No 119
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=37.87 E-value=80 Score=30.67 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=49.0
Q ss_pred HHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhhcCCCC
Q 041428 105 NTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKP 184 (322)
Q Consensus 105 ~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~ 184 (322)
+.-+||.+.|+|..- .+++|+++..++..++|+-.+||+-..-++.+.++++.. +.|
T Consensus 202 rI~~Rl~t~y~d~~a----------------------~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~-~~p 258 (561)
T COG2987 202 RIDKRLRTGYLDEIA----------------------ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRG-IRP 258 (561)
T ss_pred HHHHHHhcchhhhhc----------------------CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcC-CCC
Confidence 344788899999742 357899999999999999999999999999999998864 445
Q ss_pred cee
Q 041428 185 SVC 187 (322)
Q Consensus 185 ~~~ 187 (322)
+++
T Consensus 259 D~v 261 (561)
T COG2987 259 DLV 261 (561)
T ss_pred cee
Confidence 543
No 120
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=37.60 E-value=1.7e+02 Score=24.85 Aligned_cols=41 Identities=10% Similarity=-0.011 Sum_probs=25.7
Q ss_pred ccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 041428 114 YLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKL 173 (322)
Q Consensus 114 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l 173 (322)
.+|.++||..++ .+..+.+.+......++.+|+++.....+
T Consensus 73 ~~d~Vqlhg~e~-------------------~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES-------------------PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC-------------------HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 478999997431 13333444433456789999998865443
No 121
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=37.37 E-value=3.2e+02 Score=24.77 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=29.1
Q ss_pred EcCCCCccCcceeecccCChhHHHHHHHHHHHc-CCCeEecCCC-cC
Q 041428 17 KLLSGHTIPAVGLGTWKSGDEAFKSVFTAIVEG-GYRHIDTAKQ-YG 61 (322)
Q Consensus 17 ~l~tg~~vs~lglG~~~~~~~~~~~~l~~Al~~-Gi~~~DTA~~-Yg 61 (322)
+|++|.+.+.+.| +.++-.++++..++. ||+.|+.... .+
T Consensus 4 TlRDG~Q~~~~~~-----s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s 45 (280)
T cd07945 4 TLRDGEQTSGVSF-----SPSEKLNIAKILLQELKVDRIEVASARVS 45 (280)
T ss_pred CCCCcCcCCCCcc-----CHHHHHHHHHHHHHHhCCCEEEecCCCCC
Confidence 5678888777665 447777777776655 9999998755 44
No 122
>PRK06361 hypothetical protein; Provisional
Probab=37.09 E-value=2.6e+02 Score=23.74 Aligned_cols=183 Identities=12% Similarity=0.084 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHcCCCeEecCCCcCC--HHHH----HHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHh
Q 041428 37 EAFKSVFTAIVEGGYRHIDTAKQYGV--QENI----GLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQEL 110 (322)
Q Consensus 37 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~--e~~l----G~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~L 110 (322)
....+++++|.+.|+..|=.+++... .... -+..++. + ....=+++...-+.. ..++.+ ..+...+.++
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~-~-~~~~i~v~~GiE~~~--~~~~~~-~~~~~~~~~~ 84 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEEL-E-LYWDIEVIPGVELTH--VPPKLI-PKLAKKARDL 84 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHH-h-hcCCCEEEEEEEEcc--cCchhh-chHHHHHHHC
Confidence 34578999999999999988888641 1111 1111111 0 001112333333321 222232 3333455555
Q ss_pred CCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCC-CHHHHHHHHhhcCCCCceece
Q 041428 111 QLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNF-TLKKLNKLLNFAKTKPSVCQM 189 (322)
Q Consensus 111 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~ 189 (322)
+ .|+..+|......+ ... ..-.++.+.|.+.-+|=-.. ....+ +++...++ .+.+
T Consensus 85 ~---~~~~svH~~~~~~~-------------~~~----~~~~~a~~~~~~dvlaHpd~~~~~~~-~~~~~~~~---~lEi 140 (212)
T PRK06361 85 G---AEIVVVHGETIVEP-------------VEE----GTNLAAIECEDVDILAHPGLITEEEA-ELAAENGV---FLEI 140 (212)
T ss_pred C---CEEEEECCCCcchh-------------hhh----hhHHHHHhCCCCcEecCcchhhHHHH-HHHHHcCe---EEEE
Confidence 4 56668995322100 000 00145677887655542222 22222 33322222 3333
Q ss_pred eeCC--CCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHHHHHHh
Q 041428 190 EMHP--GWRNDKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQILLKWG 251 (322)
Q Consensus 190 ~~~~--~~~~~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~qlal~~~ 251 (322)
+... ......+++++++.|+.++.-|...... .+...+.+..++.+.|.+..++--.+.
T Consensus 141 n~~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~~~---d~~~~~~~~~i~~~~gl~~~~v~~~~~ 201 (212)
T PRK06361 141 TARKGHSLTNGHVARIAREAGAPLVINTDTHAPS---DLITYEFARKVALGAGLTEKELEEALE 201 (212)
T ss_pred ECCCCcccchHHHHHHHHHhCCcEEEECCCCCHH---HHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3211 1223679999999999988877665311 222345677788888888877655443
No 123
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=36.94 E-value=2e+02 Score=22.37 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=42.2
Q ss_pred CCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCC--CccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHH
Q 041428 79 QRKDLFVTSKLWCADLSPDRVRSALNNTLQELQL--DYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVK 156 (322)
Q Consensus 79 ~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~--d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 156 (322)
+|=-+.|+-|+.........++..+.++++.... ...|++++..+... ..+..++.+.|.+|.+
T Consensus 44 ~R~G~~VsKK~~~~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~--------------~~~~~~l~~~l~~ll~ 109 (120)
T PRK04390 44 PRLGLVVGKKTAKRAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFD--------------RATAKQAVAELAQLMA 109 (120)
T ss_pred ceEEEEEecccCcchhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcc--------------cCCHHHHHHHHHHHHH
Confidence 4555677777655456677888888888865542 35799999887543 1345566666666554
Q ss_pred c
Q 041428 157 D 157 (322)
Q Consensus 157 ~ 157 (322)
.
T Consensus 110 k 110 (120)
T PRK04390 110 K 110 (120)
T ss_pred H
Confidence 3
No 124
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=36.81 E-value=4.1e+02 Score=25.90 Aligned_cols=121 Identities=16% Similarity=0.127 Sum_probs=72.8
Q ss_pred ccHHHHHHHHHHHHHcC-CccEEEecC--C--CHHHHHHHHhhc---CCCCceeceeeCCCCCcHHHHHHHHHcCceEEE
Q 041428 142 FDMEGVWREMEKLVKDG-LVRDVGVCN--F--TLKKLNKLLNFA---KTKPSVCQMEMHPGWRNDKILEACKKNGIHVTA 213 (322)
Q Consensus 142 ~~~~~~~~~L~~l~~~G-kir~iGvs~--~--~~~~l~~~~~~~---~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via 213 (322)
.+.+.+.+.++.+++.. .++.|-+.. | +...+.++++.. ++.+. .+... +-..++++..++.|+..+.
T Consensus 227 rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~-~~~~~---~~~~e~l~~l~~aG~~~v~ 302 (472)
T TIGR03471 227 RSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWS-CNARA---NVDYETLKVMKENGLRLLL 302 (472)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEE-EEecC---CCCHHHHHHHHHcCCCEEE
Confidence 46789999999999874 567665543 3 344444444332 22111 11111 2247899999999988777
Q ss_pred eccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhcC----CEEecCC--CCHHHHHHhHhc
Q 041428 214 YSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQILLKWGIHRG----TSVIPKS--THPDRIKENIKA 274 (322)
Q Consensus 214 ~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~----~~~i~g~--~~~~~l~~nl~a 274 (322)
.+.=. ...+.++.+.+.+...-..-+++++...+ ...|+|. .+.+.+.+.++.
T Consensus 303 iGiES--------~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~ 361 (472)
T TIGR03471 303 VGYES--------GDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDF 361 (472)
T ss_pred EcCCC--------CCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHH
Confidence 55432 24556666644433333344667777776 3457774 788888887654
No 125
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=36.73 E-value=2e+02 Score=26.65 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCccEEEecC----CCHHHH----HHHHhhcCCCCceeceeeCCCC---Cc-HHHHHHHHHcCceEEE
Q 041428 146 GVWREMEKLVKDGLVRDVGVCN----FTLKKL----NKLLNFAKTKPSVCQMEMHPGW---RN-DKILEACKKNGIHVTA 213 (322)
Q Consensus 146 ~~~~~L~~l~~~Gkir~iGvs~----~~~~~l----~~~~~~~~~~~~~~q~~~~~~~---~~-~~ll~~~~~~gi~via 213 (322)
.+.+.++.+..-..++.+|+.+ ..+..+ .+.++..+. ..++++.+|-.. .. .+.++.+++.|+.+..
T Consensus 160 ~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~-~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~ 238 (321)
T TIGR03821 160 RLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRL-QTVLVVHINHANEIDAEVADALAKLRNAGITLLN 238 (321)
T ss_pred HHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCC-cEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEEe
Confidence 3566677777778888888875 322222 223333222 122334554321 11 5688889999999999
Q ss_pred eccCCCCC
Q 041428 214 YSPLGSQG 221 (322)
Q Consensus 214 ~~pl~~~G 221 (322)
.+++.. |
T Consensus 239 qtvllk-g 245 (321)
T TIGR03821 239 QSVLLR-G 245 (321)
T ss_pred cceeeC-C
Confidence 999876 5
No 126
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=36.47 E-value=66 Score=25.04 Aligned_cols=40 Identities=18% Similarity=0.080 Sum_probs=35.8
Q ss_pred CChhHHHHHHHHHHHcCCCeEecCCCcC-CHHHHHHHHHHH
Q 041428 34 SGDEAFKSVFTAIVEGGYRHIDTAKQYG-VQENIGLALKEA 73 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~e~~lG~~l~~~ 73 (322)
.+.+.-.+++...++.|.+.-+.|..|| +...+..|.+..
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y 53 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQY 53 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5666667889999999999999999999 999999999986
No 127
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.05 E-value=1.6e+02 Score=25.28 Aligned_cols=61 Identities=11% Similarity=0.225 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCccEEEecCC-CHHHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEE
Q 041428 146 GVWREMEKLVKDGLVRDVGVCNF-TLKKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTA 213 (322)
Q Consensus 146 ~~~~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via 213 (322)
+..+.+++++++..=-.||..+. +.++++++++.+. ++-.+|. -+.+++++|+++||.++.
T Consensus 41 ~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA------~FivSP~-~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 41 AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS------RFIVSPG-TTQELLAAANDSDVPLLP 102 (201)
T ss_pred cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC------CEEECCC-CCHHHHHHHHHcCCCEeC
Confidence 45556666665543346888877 6888888887654 3333332 347899999999998875
No 128
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=35.84 E-value=3.2e+02 Score=24.35 Aligned_cols=104 Identities=14% Similarity=0.057 Sum_probs=61.8
Q ss_pred CChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCcccccc-HHHHHHHHHHHHHcCCccEEEecCCCHHH
Q 041428 94 LSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFD-MEGVWREMEKLVKDGLVRDVGVCNFTLKK 172 (322)
Q Consensus 94 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~l~~~Gkir~iGvs~~~~~~ 172 (322)
.+++.+.+..++-++ -|.|+||+=. .|.. .+ .++.-+.+..+++.-. .-|.|-+++++.
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~----------------~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v 82 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGG----------------LDGVSAMKWLLNLLATEPT-VPLMLDSTNWEV 82 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCC----------------CCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHH
Confidence 456777777776664 5999999843 1211 12 2233333222332212 238999999999
Q ss_pred HHHHHhhcCCCCceeceeeCCCC-CcHHHHHHHHHcCceEEEeccC
Q 041428 173 LNKLLNFAKTKPSVCQMEMHPGW-RNDKILEACKKNGIHVTAYSPL 217 (322)
Q Consensus 173 l~~~~~~~~~~~~~~q~~~~~~~-~~~~ll~~~~~~gi~via~~pl 217 (322)
++++++...-...++-+....++ ....+++.++++|..++.+..-
T Consensus 83 ~e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 83 IEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred HHHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 99999873222234444322211 2367889999999999887543
No 129
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=35.68 E-value=1.4e+02 Score=25.77 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=41.5
Q ss_pred HHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHhhcCCCC
Q 041428 106 TLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVC-NFTLKKLNKLLNFAKTKP 184 (322)
Q Consensus 106 SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs-~~~~~~l~~~~~~~~~~~ 184 (322)
....+|.|++=+.+...-.+ ..+.+.+ ..+.+.. .+.++.+||. |-+++.+.++++..+ +
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR---------------~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~--~ 76 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKR---------------HQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTS--I 76 (207)
T ss_pred HHHHcCCCEEEEecCCCCcc---------------cCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCC--C
Confidence 34569999998874332111 1233333 3333332 2568889996 778889988887644 5
Q ss_pred ceeceee
Q 041428 185 SVCQMEM 191 (322)
Q Consensus 185 ~~~q~~~ 191 (322)
+++|++-
T Consensus 77 d~vQLHG 83 (207)
T PRK13958 77 NTIQLHG 83 (207)
T ss_pred CEEEECC
Confidence 8899863
No 130
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.25 E-value=3e+02 Score=26.14 Aligned_cols=98 Identities=12% Similarity=0.067 Sum_probs=61.4
Q ss_pred eEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCC----ccEEEec--CCCHHHHHHHHhhcC-C------CC
Q 041428 118 YLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGL----VRDVGVC--NFTLKKLNKLLNFAK-T------KP 184 (322)
Q Consensus 118 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk----ir~iGvs--~~~~~~l~~~~~~~~-~------~~ 184 (322)
+.||.|+........+.++ ..+++++++++.+..+... +-|+=+. |-+.++..++.+..+ . +.
T Consensus 232 iSLHA~~~e~R~~lmPin~----~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~ 307 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNR----RYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLV 307 (371)
T ss_pred EEeCCCCHHHHHHhcCccc----CCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCce
Confidence 6789987654321111110 2468999999999875533 2222222 445666666666544 3 45
Q ss_pred ceeceeeCCCCCc----------HHHHHHHHHcCceEEEeccCCC
Q 041428 185 SVCQMEMHPGWRN----------DKILEACKKNGIHVTAYSPLGS 219 (322)
Q Consensus 185 ~~~q~~~~~~~~~----------~~ll~~~~~~gi~via~~pl~~ 219 (322)
.++=++||+.... ....+..+++||.+......|.
T Consensus 308 ~VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 308 HVNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred EEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 7888888886431 3466667889999999988764
No 131
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=34.98 E-value=2.7e+02 Score=24.80 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHc-CCccEEEec---CCCHHHH
Q 041428 98 RVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKD-GLVRDVGVC---NFTLKKL 173 (322)
Q Consensus 98 ~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-Gkir~iGvs---~~~~~~l 173 (322)
.-+.++-+.|.++|+++|.+-+....... .+... .+....++.++.+++. +.++...++ ......+
T Consensus 22 ~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~----~~~~~------~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i 91 (263)
T cd07943 22 EQVRAIARALDAAGVPLIEVGHGDGLGGS----SLNYG------FAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDL 91 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEeecCCCCCCc----ccccC------CCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHH
Confidence 34455556699999999998765321100 00000 0011234455555333 346665554 2235556
Q ss_pred HHHHhhcCCCCceeceeeCCCCC--cHHHHHHHHHcCceEEEe
Q 041428 174 NKLLNFAKTKPSVCQMEMHPGWR--NDKILEACKKNGIHVTAY 214 (322)
Q Consensus 174 ~~~~~~~~~~~~~~q~~~~~~~~--~~~ll~~~~~~gi~via~ 214 (322)
+.+.+. + ++.+.+.+..-+. -.+.+++++++|+.+...
T Consensus 92 ~~a~~~-g--~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 92 KMAADL-G--VDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHHHHc-C--CCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 665543 2 3455543333221 267888999999876654
No 132
>PRK09061 D-glutamate deacylase; Validated
Probab=34.63 E-value=4.7e+02 Score=25.92 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCCCeEecCCCc--C-CHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC-ChHHHHHHHHHHHHHhCCCc
Q 041428 39 FKSVFTAIVEGGYRHIDTAKQY--G-VQENIGLALKEAMQTGIQRKDLFVTSKLWCADL-SPDRVRSALNNTLQELQLDY 114 (322)
Q Consensus 39 ~~~~l~~Al~~Gi~~~DTA~~Y--g-~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~-~~~~i~~~~~~SL~~Lg~d~ 114 (322)
..++++.|++.|+..|=+...| + +...+-..++.. .+-+..|.+....... ++.....++++.++.-+..-
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A-----~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~~G 245 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLA-----ARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAETG 245 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHH-----HHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHHhC
Confidence 5677888999999999775556 2 455556666554 3445666666532221 22233445555554433222
Q ss_pred cceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCC
Q 041428 115 LDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFT 169 (322)
Q Consensus 115 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~ 169 (322)
.-+...|--... .....+.++.+++.+++|.--..-++-|.
T Consensus 246 ~rv~IsHlss~g--------------~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 246 AHMHICHVNSTS--------------LRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred CCEEEEeeccCC--------------cccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 346666753321 02357888999999999864444444343
No 133
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=34.59 E-value=3e+02 Score=23.79 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=58.5
Q ss_pred CChhHHHHHHHHHHHcCCCeEecCCCcC-----CHHHHHHHHHHHHhcCCCCCcEEEEecCC------------------
Q 041428 34 SGDEAFKSVFTAIVEGGYRHIDTAKQYG-----VQENIGLALKEAMQTGIQRKDLFVTSKLW------------------ 90 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-----~e~~lG~~l~~~~~~~~~R~~~~i~tK~~------------------ 90 (322)
.++++....+..|++.--..+=.-.+.| ++..+...++..- .|.-+||=++..
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l~----~~gl~FvDS~T~~~s~a~~~A~~~gvp~~~ 146 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVLK----ERGLFFVDSRTTPRSVAPQVAKELGVPAAR 146 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHHH----HTT-EEEE-S--TT-SHHHHHHHCT--EEE
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHHH----HcCCEEEeCCCCcccHHHHHHHHcCCCEEe
Confidence 5677788888888876222221123333 4666666665541 244455534331
Q ss_pred -----CCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcC
Q 041428 91 -----CADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDG 158 (322)
Q Consensus 91 -----~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G 158 (322)
....+.+.|++++++..+.-+..-.=+..-|- .+ ..++.+-+.+.++.++|
T Consensus 147 rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh~-~p----------------~Tl~~L~~~~~~l~~~g 202 (213)
T PF04748_consen 147 RDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGHP-RP----------------ETLEALEEWLPELEAQG 202 (213)
T ss_dssp -SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE--SC----------------CHHHHHHHHHHHHHHCT
T ss_pred eceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEcC-CH----------------HHHHHHHHHHhHHhhCC
Confidence 13467889999999999888877666776673 22 23455555666666665
No 134
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=34.47 E-value=4e+02 Score=25.08 Aligned_cols=38 Identities=8% Similarity=0.021 Sum_probs=29.7
Q ss_pred EcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCeEecCCC
Q 041428 17 KLLSGHTIPAVGLGTWKSGDEAFKSVFTAIVEGGYRHIDTAKQ 59 (322)
Q Consensus 17 ~l~tg~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~ 59 (322)
+|++|.+.+.+.| +.++-.++++...+.||+.|+....
T Consensus 53 TlRDG~Q~~g~~~-----s~e~Ki~ia~~L~~~GV~~IEvGs~ 90 (347)
T PLN02746 53 GPRDGLQNEKNIV-----PTSVKVELIQRLVSSGLPVVEATSF 90 (347)
T ss_pred CCCccCcCCCCCC-----CHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4567777776654 5578889999999999999998743
No 135
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=34.18 E-value=2.2e+02 Score=22.14 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=45.6
Q ss_pred CCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCC---CccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHH
Q 041428 79 QRKDLFVTSKLWCADLSPDRVRSALNNTLQELQL---DYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLV 155 (322)
Q Consensus 79 ~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~---d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 155 (322)
+|=-+.|+-|++........++..+.+.++.+.. ...|++++-.+... +.+..++.+.|..|.
T Consensus 47 ~R~G~~VsKK~~~~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~--------------~~~~~~l~~~l~~ll 112 (122)
T PRK03031 47 TRFGISISQKVSKKAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAA--------------ECNYEQFLQELEQLL 112 (122)
T ss_pred cEEEEEEecccccchhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcc--------------cCCHHHHHHHHHHHH
Confidence 3444666667665566778888888888887642 35899998877553 245678888887776
Q ss_pred Hc
Q 041428 156 KD 157 (322)
Q Consensus 156 ~~ 157 (322)
+.
T Consensus 113 ~k 114 (122)
T PRK03031 113 IQ 114 (122)
T ss_pred HH
Confidence 55
No 136
>PRK06740 histidinol-phosphatase; Validated
Probab=34.12 E-value=3.8e+02 Score=24.91 Aligned_cols=23 Identities=4% Similarity=0.169 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHcCCCeEecCCC
Q 041428 37 EAFKSVFTAIVEGGYRHIDTAKQ 59 (322)
Q Consensus 37 ~~~~~~l~~Al~~Gi~~~DTA~~ 59 (322)
....+.+++|++.|+..|=-+++
T Consensus 61 ~~~e~yv~~Ai~~G~~~ig~SdH 83 (331)
T PRK06740 61 KWIDLYLEEALRKGIKEVGIVDH 83 (331)
T ss_pred chHHHHHHHHHHCCCcEEEECCC
Confidence 44678999999999987765555
No 137
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=34.10 E-value=81 Score=22.81 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=35.5
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEEec
Q 041428 151 MEKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYS 215 (322)
Q Consensus 151 L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~ 215 (322)
+++|++.|++ .+|. .+..+.++.+..+..++--+.+. +....+..+|++++|+++-+.
T Consensus 3 ~~~~~ragkl-~~G~-----~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSI-VIGT-----KQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCE-EEcH-----HHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 5667777764 2443 45566666665544444444433 122678888999999987755
No 138
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=33.97 E-value=3.8e+02 Score=25.59 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCc---HHHHHHHHHcCceEEEeccCCC
Q 041428 146 GVWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRN---DKILEACKKNGIHVTAYSPLGS 219 (322)
Q Consensus 146 ~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~via~~pl~~ 219 (322)
..+..+..+.+.+.++.+-+...+.+.+++.++. ..+..++..+-|+.-.- .++.+.|+++|+.++.=.+++.
T Consensus 111 ~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 111 GSWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred HHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 5555566655555677677766677777776642 23223333344443322 7799999999999887555543
No 139
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=33.72 E-value=1.8e+02 Score=26.01 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=35.3
Q ss_pred CccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 041428 113 DYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKLNKLL 177 (322)
Q Consensus 113 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~ 177 (322)
...|+++|..|...-+ .....++++.|.+|+++|+ .|=+.+|+...+.+..
T Consensus 156 ~~p~lllLDEP~~gvD------------~~~~~~i~~lL~~l~~eg~--tIl~vtHDL~~v~~~~ 206 (254)
T COG1121 156 QNPDLLLLDEPFTGVD------------VAGQKEIYDLLKELRQEGK--TVLMVTHDLGLVMAYF 206 (254)
T ss_pred cCCCEEEecCCcccCC------------HHHHHHHHHHHHHHHHCCC--EEEEEeCCcHHhHhhC
Confidence 3467777766654211 2345789999999999987 4778888877765543
No 140
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=33.71 E-value=72 Score=28.93 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=39.7
Q ss_pred CCHHHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEEeccCCC
Q 041428 168 FTLKKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSPLGS 219 (322)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl~~ 219 (322)
|+...+.++.+..+++..++-..||+.+. ++.++|++.|+.+++--|+..
T Consensus 201 hD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 201 HDLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcch
Confidence 34556677777788888888888866555 899999999999999888854
No 141
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=33.37 E-value=72 Score=31.85 Aligned_cols=94 Identities=12% Similarity=0.070 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHcCCccEEE-ecCCC-----HHHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEEecc
Q 041428 143 DMEGVWREMEKLVKDGLVRDVG-VCNFT-----LKKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSP 216 (322)
Q Consensus 143 ~~~~~~~~L~~l~~~Gkir~iG-vs~~~-----~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~p 216 (322)
.+.++.+-|.+++++|+||++. +.+.+ ......+.+. ++=+++=+...-..-.-.-++.|...||+-+-
T Consensus 391 ~il~a~d~lielI~sGkIKgv~~v~GCd~~~~~~~yvt~~kel--iprD~lVLt~GCgk~~~~~~~vc~~lGIPpVL--- 465 (576)
T COG1151 391 SILAAADPLIELIASGKIKGVVVVVGCDGLRSGRHYVTLFKEL--IPRDILVLTLGCGKYRFNKADVGDILGIPRVL--- 465 (576)
T ss_pred HHHHHHHHHHHHHhcCCcceEEEEeeCCCCCCCcccHHHHHHh--cccceEEEecccchhhhhhhccccccCCCccc---
Confidence 3566777888999999999874 33332 1222333222 21122211111111112334777777776322
Q ss_pred CCCCCCCCCCCC-CHHHHHHHHhcCCCH
Q 041428 217 LGSQGAGRDLIH-DPTVERIAKKLNKSP 243 (322)
Q Consensus 217 l~~~G~l~~~~~-~~~l~~la~~~~~s~ 243 (322)
..|.-....+ .....+||+.+|++.
T Consensus 466 --d~GqCnD~~r~~~la~aLae~lgvdI 491 (576)
T COG1151 466 --DFGQCNDIYRIIVLALALAEVLGLDI 491 (576)
T ss_pred --cccccchHHHHHHHHHHHHHHhCCCC
Confidence 1131111111 134567888888754
No 142
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=33.24 E-value=3.8e+02 Score=25.17 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=69.1
Q ss_pred CChhHHHHHHHHHHHc---CCCeEecCCCcCCHHHHHHHHHHHHhcCCCCCcEEEEecCC--CCCCChHHHHHHHHHHHH
Q 041428 34 SGDEAFKSVFTAIVEG---GYRHIDTAKQYGVQENIGLALKEAMQTGIQRKDLFVTSKLW--CADLSPDRVRSALNNTLQ 108 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~---Gi~~~DTA~~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~--~~~~~~~~i~~~~~~SL~ 108 (322)
.+.++..+++....+. =+-.+|..+..++- -..+.+.+ + ...-++|.+|+- ......+.+.+.+.+.++
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~---~~~l~~~~--~-~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL---IPELKRFV--G-GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAK 121 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCCc---cHHHHHHh--C-CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHH
Confidence 4556666666655432 22356765544420 11122211 1 355688999982 223334556666666677
Q ss_pred HhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHHH
Q 041428 109 ELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKLN 174 (322)
Q Consensus 109 ~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~ 174 (322)
.+|....+++.+-.-. ...++++++.|.++.+.+.+-.+|.+|..-..+-
T Consensus 122 ~~g~~~~~i~~vSAk~----------------g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStli 171 (360)
T TIGR03597 122 ELGLKPVDIILVSAKK----------------GNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLI 171 (360)
T ss_pred HcCCCcCcEEEecCCC----------------CCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH
Confidence 7775434555543211 1347889999988877778999999999865543
No 143
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=32.46 E-value=76 Score=28.12 Aligned_cols=70 Identities=20% Similarity=0.248 Sum_probs=42.7
Q ss_pred CCCCccCcceeeccc----CC-----hhHHH----HHHHHHHHcCCCeEecCCC--c-C--CHHHHHHH---HHHHHhcC
Q 041428 19 LSGHTIPAVGLGTWK----SG-----DEAFK----SVFTAIVEGGYRHIDTAKQ--Y-G--VQENIGLA---LKEAMQTG 77 (322)
Q Consensus 19 ~tg~~vs~lglG~~~----~~-----~~~~~----~~l~~Al~~Gi~~~DTA~~--Y-g--~e~~lG~~---l~~~~~~~ 77 (322)
.+|+.+|.++|.+.+ .+ ++++. ..+..|.+.|||.|--|.. | . +++...++ ++...+.
T Consensus 65 etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l- 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL- 143 (287)
T ss_pred HhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH-
Confidence 689999999999865 11 23444 4455667889999998854 2 2 44433333 3332211
Q ss_pred CCCCcEEEEecC
Q 041428 78 IQRKDLFVTSKL 89 (322)
Q Consensus 78 ~~R~~~~i~tK~ 89 (322)
-.+-+|.++.-+
T Consensus 144 A~~aqV~lAvEi 155 (287)
T COG3623 144 AARAQVMLAVEI 155 (287)
T ss_pred HHhhccEEEeee
Confidence 146677777766
No 144
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=32.44 E-value=2.5e+02 Score=22.69 Aligned_cols=63 Identities=8% Similarity=0.089 Sum_probs=43.5
Q ss_pred CCCcEEEEecCCCCCCChHHHHHHHHHHHHHhC--CCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHH
Q 041428 79 QRKDLFVTSKLWCADLSPDRVRSALNNTLQELQ--LDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVK 156 (322)
Q Consensus 79 ~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 156 (322)
+|=-+.|+-|++. ....+.|+..+.++++.+. ....|++++..+... .+..++.+.|.++.+
T Consensus 46 ~RlG~sVSKKvg~-AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~---------------~~f~~L~~~l~~~~~ 109 (138)
T PRK00730 46 CKVGITVSKKFGK-AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ---------------PDFLKLLQDFLQQIP 109 (138)
T ss_pred ceEEEEEeccccc-chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC---------------CCHHHHHHHHHHHHH
Confidence 4556778888753 5567788888888888764 346899999876543 345666666666655
Q ss_pred c
Q 041428 157 D 157 (322)
Q Consensus 157 ~ 157 (322)
+
T Consensus 110 ~ 110 (138)
T PRK00730 110 E 110 (138)
T ss_pred H
Confidence 4
No 145
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=32.27 E-value=1.3e+02 Score=25.79 Aligned_cols=67 Identities=9% Similarity=-0.001 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHH--cCCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEEeccC
Q 041428 145 EGVWREMEKLVK--DGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSPL 217 (322)
Q Consensus 145 ~~~~~~L~~l~~--~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl 217 (322)
+.+...++.+++ .+. -+.|-+++++.++++++. +.++..+.. -+....++++.++++|..++++..-
T Consensus 57 ~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~---~~~~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 57 ERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDIS---GFEDDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp HHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETT---TTSSSTTHHHHHHHHTSEEEEESES
T ss_pred HHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEecc---cccccchhhhhhhcCCCEEEEEecc
Confidence 344555555554 233 488999999999999998 443322222 2222578999999999999998765
No 146
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=32.23 E-value=61 Score=22.18 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHhh
Q 041428 231 TVERIAKKLNKSPGQILLKWGI 252 (322)
Q Consensus 231 ~l~~la~~~~~s~~qlal~~~l 252 (322)
-+.+||+++|+++.+++..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4678999999999999999975
No 147
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=32.03 E-value=63 Score=24.95 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=24.6
Q ss_pred CChhHHHHHHHHHHHcCCCeEecCCCcC
Q 041428 34 SGDEAFKSVFTAIVEGGYRHIDTAKQYG 61 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg 61 (322)
.+.+.+.+....+++.|++.||.+..|-
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 5667788999999999999999999983
No 148
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=31.85 E-value=1.7e+02 Score=29.29 Aligned_cols=76 Identities=17% Similarity=0.073 Sum_probs=48.3
Q ss_pred ccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEEeccC
Q 041428 142 FDMEGVWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSPL 217 (322)
Q Consensus 142 ~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl 217 (322)
.+..++.+.+.+.++..+|++||+-.+....+...++..++++..+--.+.-+...-.-++..-..|.-+..-.|+
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGAIKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCchhHHHHHHHhcCcEEECCCcH
Confidence 3467888888888899999999999998888888888877764433333322222233344444444444443333
No 149
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=31.83 E-value=4.9e+02 Score=25.30 Aligned_cols=125 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCeEecCCCcC------------CHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHH
Q 041428 40 KSVFTAIVEGGYRHIDTAKQYG------------VQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTL 107 (322)
Q Consensus 40 ~~~l~~Al~~Gi~~~DTA~~Yg------------~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL 107 (322)
.+.++...+.|+|.+.-.-.-. +.+.+-++++...+.|+..=.+-+..=+ +..+.+.+.+.++..+
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~Gl--Pgqt~e~~~~tl~~~~ 229 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGL--PHQTVESFRETLDKVI 229 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeC--CCCCHHHHHHHHHHHH
Q ss_pred HHhCCCccceeEe-ecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCC
Q 041428 108 QELQLDYLDLYLI-HWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNF 168 (322)
Q Consensus 108 ~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~ 168 (322)
.|+.++|.+|.+ |.|.............-...+......-.+.+.|.+.|-.+ +|+++|
T Consensus 230 -~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~-~~~~~f 289 (453)
T PRK13347 230 -ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP-IGLDHF 289 (453)
T ss_pred -hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE-Eeccce
No 150
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=31.72 E-value=4.4e+02 Score=24.71 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHcCCccEEEecC-----CCHHHHHHHHhhc---CCCCc-eeceeeCCCCCcHHHHHHHHHcCceEEEe
Q 041428 144 MEGVWREMEKLVKDGLVRDVGVCN-----FTLKKLNKLLNFA---KTKPS-VCQMEMHPGWRNDKILEACKKNGIHVTAY 214 (322)
Q Consensus 144 ~~~~~~~L~~l~~~Gkir~iGvs~-----~~~~~l~~~~~~~---~~~~~-~~q~~~~~~~~~~~ll~~~~~~gi~via~ 214 (322)
.+.+.+.++.+.....++.|=+.. .+++.++.+.+.. ...+. -+-++.|+..-..+.+...++.|+.-+..
T Consensus 36 ~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsi 115 (374)
T PRK05799 36 IKALSKEIRNSTKNKKIKSIFIGGGTPTYLSLEALEILKETIKKLNKKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSI 115 (374)
T ss_pred HHHHHHHHHhhcCCCceeEEEECCCcccCCCHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEE
Confidence 344555554443344466664443 2456666555432 22221 24445666655689999999999877765
Q ss_pred cc
Q 041428 215 SP 216 (322)
Q Consensus 215 ~p 216 (322)
+.
T Consensus 116 Gv 117 (374)
T PRK05799 116 GL 117 (374)
T ss_pred EC
Confidence 54
No 151
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.66 E-value=4.9e+02 Score=25.31 Aligned_cols=126 Identities=16% Similarity=0.220 Sum_probs=67.9
Q ss_pred cccccHHHHHHHHHHHHHcCCccEEEecC-----CC--HHHHHHHHhhc-CCCCceeceeeCCCC---CcHHHHHHHHHc
Q 041428 139 VLEFDMEGVWREMEKLVKDGLVRDVGVCN-----FT--LKKLNKLLNFA-KTKPSVCQMEMHPGW---RNDKILEACKKN 207 (322)
Q Consensus 139 ~~~~~~~~~~~~L~~l~~~Gkir~iGvs~-----~~--~~~l~~~~~~~-~~~~~~~q~~~~~~~---~~~~ll~~~~~~ 207 (322)
.-..+++++.+.++.|++.| ++.|-+.. +. ...+.++++.. .. .....+.+...+ -..++++..++.
T Consensus 180 ~rsr~~e~Iv~Ei~~l~~~G-~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~-~~~~~ir~~~~~p~~~~~ell~~m~~~ 257 (449)
T PRK14332 180 ERSRDPKSIVREIQDLQEKG-IRQVTLLGQNVNSYKEQSTDFAGLIQMLLDE-TTIERIRFTSPHPKDFPDHLLSLMAKN 257 (449)
T ss_pred cccCCHHHHHHHHHHHHHCC-CeEEEEecccCCcccCCcccHHHHHHHHhcC-CCcceEEEECCCcccCCHHHHHHHHhC
Confidence 34467899999999999987 77775542 21 11244443321 11 112233333323 347899999887
Q ss_pred C--ceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhc-C-----CEEecCC--CCHHHHHHhHhc
Q 041428 208 G--IHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQILLKWGIHR-G-----TSVIPKS--THPDRIKENIKA 274 (322)
Q Consensus 208 g--i~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~qlal~~~l~~-~-----~~~i~g~--~~~~~l~~nl~a 274 (322)
| +..+ +-|+-+ | .++.++.+.+.+...-..-+++++... | ...|+|. .+.+++++.++.
T Consensus 258 ~~~~~~l-~lgvQS-g------sd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~tl~~ 326 (449)
T PRK14332 258 PRFCPNI-HLPLQA-G------NTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDTLAV 326 (449)
T ss_pred CCccceE-EECCCc-C------CHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHHHHH
Confidence 6 3222 234433 3 345666665544333334455555543 2 3467774 667776666543
No 152
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=31.59 E-value=90 Score=23.49 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=36.1
Q ss_pred cCCCHHHHHHHHhhcCCCCceeceeeCCC---CCcHHHHHHHHHcCceEEEeccCCC
Q 041428 166 CNFTLKKLNKLLNFAKTKPSVCQMEMHPG---WRNDKILEACKKNGIHVTAYSPLGS 219 (322)
Q Consensus 166 s~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~ll~~~~~~gi~via~~pl~~ 219 (322)
+.++...+.++++...+ +++|+...-. ..-..+..+|+++|+.++.++. .+
T Consensus 3 ~~~~~~~~~~li~~~a~--d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~ 56 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAV--DIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ES 56 (111)
T ss_dssp TSSSHHHHHHHHHTTSC--SEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SS
T ss_pred CCCCHHHHHHHHHcCCC--CEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CC
Confidence 45677888888886554 7777764332 2237799999999999999987 44
No 153
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=31.58 E-value=93 Score=28.94 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=47.5
Q ss_pred ccHHHHHHHHHHHHHcCCccEEEecCCCHHH-----HHHHHhhc----CCCCc----eece--ee-CCC-CCc-HHHHHH
Q 041428 142 FDMEGVWREMEKLVKDGLVRDVGVCNFTLKK-----LNKLLNFA----KTKPS----VCQM--EM-HPG-WRN-DKILEA 203 (322)
Q Consensus 142 ~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~-----l~~~~~~~----~~~~~----~~q~--~~-~~~-~~~-~~ll~~ 203 (322)
....+..+.|+++.+.++|+.+.+-+|.+.+ ++++..+. +.... .++- .. .-+ ... ..+++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~ 171 (325)
T cd01306 92 LADPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAYAPANRSELAAL 171 (325)
T ss_pred ecCccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCHHHHHHHHHH
Confidence 3456889999999999999999999998755 22332222 11110 0100 00 001 011 679999
Q ss_pred HHHcCceEEEecc
Q 041428 204 CKKNGIHVTAYSP 216 (322)
Q Consensus 204 ~~~~gi~via~~p 216 (322)
|+++|+.+.++.-
T Consensus 172 A~~~gl~vasH~d 184 (325)
T cd01306 172 ARARGIPLASHDD 184 (325)
T ss_pred HHHCCCcEEEecC
Confidence 9999999988863
No 154
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=31.30 E-value=4.2e+02 Score=24.41 Aligned_cols=216 Identities=16% Similarity=0.217 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHHHcCCCeEecCCC---------cCCHHHH------HHHHHHHHhcCC-CCCcEEEEecCCC--------
Q 041428 36 DEAFKSVFTAIVEGGYRHIDTAKQ---------YGVQENI------GLALKEAMQTGI-QRKDLFVTSKLWC-------- 91 (322)
Q Consensus 36 ~~~~~~~l~~Al~~Gi~~~DTA~~---------Yg~e~~l------G~~l~~~~~~~~-~R~~~~i~tK~~~-------- 91 (322)
++...++=++-+++|-..+.|=.. |+-|..+ |--|.+..+.+. .+.+.||+--+++
T Consensus 52 Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~~~ 131 (311)
T COG0646 52 PDVIEAIHRAYIEAGADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLSIS 131 (311)
T ss_pred cHHHHHHHHHHHhccCcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcCCcC
Confidence 444555555566999999998443 2212211 122333322221 1135555554432
Q ss_pred C--CCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccE-----EE
Q 041428 92 A--DLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRD-----VG 164 (322)
Q Consensus 92 ~--~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~-----iG 164 (322)
. ..+.+.++.+..+..+-|--.-+|++++...... ...+.++.+.++..++..++- .-
T Consensus 132 ~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~---------------l~~KaA~~a~~~~~~~~~~~LPv~~s~T 196 (311)
T COG0646 132 PDFAVTFDELVEAYREQVEGLIDGGADLILIETIFDT---------------LNAKAAVFAAREVFEELGVRLPVMISGT 196 (311)
T ss_pred CcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccH---------------HHHHHHHHHHHHHHHhcCCcccEEEEEE
Confidence 2 3567899999999999998888999999875332 235677777777776544331 11
Q ss_pred ecC--C--CHHHHHHHHhhcC-CCCceeceeeCCCCCc-HHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHh
Q 041428 165 VCN--F--TLKKLNKLLNFAK-TKPSVCQMEMHPGWRN-DKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKK 238 (322)
Q Consensus 165 vs~--~--~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~ 238 (322)
+.+ . +...++.++.... ..++++=+++...-.. .+.+....+.-=.+++--|-+ |+ |+....+. .
T Consensus 197 i~~sG~tl~Gq~~~a~~~~l~~~~~~~vGlNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNA--GL-P~~~g~~~------~ 267 (311)
T COG0646 197 ITDSGRTLSGQTIEAFLNSLEHLGPDAVGLNCALGPDEMRPHLRELSRIADAFVSVYPNA--GL-PNAFGERA------V 267 (311)
T ss_pred EecCceecCCCcHHHHHHHhhccCCcEEeeccccCHHHHHHHHHHHHhccCceEEEeCCC--CC-CcccCCcc------c
Confidence 111 0 1122333333222 3345555544433211 344444444433344444544 32 22222110 1
Q ss_pred cCCCHH---HHHHHHhhhcCCEEecCC--CCHHHHHHhHhcc
Q 041428 239 LNKSPG---QILLKWGIHRGTSVIPKS--THPDRIKENIKAF 275 (322)
Q Consensus 239 ~~~s~~---qlal~~~l~~~~~~i~g~--~~~~~l~~nl~a~ 275 (322)
|..+|. +..-.|+...+.-+|=|+ ++|+|++.-.++.
T Consensus 268 Y~~~p~~~a~~~~~f~~~g~vnIvGGCCGTTPeHIraia~~v 309 (311)
T COG0646 268 YDLTPEYMAEALAEFAEEGGVNIVGGCCGTTPEHIRAIAEAV 309 (311)
T ss_pred cCCCHHHHHHHHHHHHHhCCceeeccccCCCHHHHHHHHHHh
Confidence 233333 333335554445555555 8999998876654
No 155
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=30.40 E-value=2.5e+02 Score=30.09 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=53.8
Q ss_pred CCChHHHHHHHHHHHHHhCC-Cc-------------------------cceeEeecCCCCCCCCCCCCCCCccccccHHH
Q 041428 93 DLSPDRVRSALNNTLQELQL-DY-------------------------LDLYLIHWPFRLKEGASRPPKDGEVLEFDMEG 146 (322)
Q Consensus 93 ~~~~~~i~~~~~~SL~~Lg~-d~-------------------------iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~ 146 (322)
......+.+.++..|+.++. +| ..+++|..|....+ +.....
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmD------------P~arr~ 736 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLD------------PKARRH 736 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCC------------HHHHHH
Confidence 34556777778888887774 22 34555555543211 234578
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHhhcC
Q 041428 147 VWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAK 181 (322)
Q Consensus 147 ~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~ 181 (322)
+|+.+.++++.|+ +|=+++|+.+..+.+.....
T Consensus 737 lW~ii~~~~k~g~--aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 737 LWDIIARLRKNGK--AIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred HHHHHHHHHhcCC--EEEEEcCCHHHHHHHhhhhh
Confidence 9999999999999 89999999999998887644
No 156
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=30.16 E-value=4.4e+02 Score=24.26 Aligned_cols=126 Identities=15% Similarity=0.069 Sum_probs=66.1
Q ss_pred CChhHHHHHHHHHHHcCCCeEecCCCcCCHHH----HHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHH
Q 041428 34 SGDEAFKSVFTAIVEGGYRHIDTAKQYGVQEN----IGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQE 109 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~----lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~ 109 (322)
.+.++..++++.+.+.|+..|--+ |-|.. +-+.++...+.+ ...++.|+|... .+. ..-+.|..
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~t---GGEPllr~dl~~li~~i~~~~-~l~~i~itTNG~-------ll~-~~~~~L~~ 112 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLT---GGEPLVRRGCDQLVARLGKLP-GLEELSLTTNGS-------RLA-RFAAELAD 112 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---CcCCCccccHHHHHHHHHhCC-CCceEEEEeChh-------HHH-HHHHHHHH
Confidence 466788899999999999888654 32222 223333221111 123566777641 122 23455666
Q ss_pred hCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCC----ccEEEecCCCHHHHHHHHhh
Q 041428 110 LQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGL----VRDVGVCNFTLKKLNKLLNF 179 (322)
Q Consensus 110 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk----ir~iGvs~~~~~~l~~~~~~ 179 (322)
.|+++|. +-|+..++..- ..-.+ ....+.+++.++.+++.|. |..+.+...+.+.+.++++.
T Consensus 113 aGl~~v~-ISlDs~~~e~~----~~i~~---~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~ 178 (329)
T PRK13361 113 AGLKRLN-ISLDTLRPELF----AALTR---NGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEF 178 (329)
T ss_pred cCCCeEE-EEeccCCHHHh----hhhcC---CCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHH
Confidence 7777665 34555433110 00000 1246788899999888875 22233333444555444444
No 157
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=30.07 E-value=4.6e+02 Score=24.45 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=65.9
Q ss_pred CChhHHHHHHHHHHHcCCCeEecCCCcC----------------CHHHHHH-HHHHHHhcCCCCCcEEEEecCCCCCCCh
Q 041428 34 SGDEAFKSVFTAIVEGGYRHIDTAKQYG----------------VQENIGL-ALKEAMQTGIQRKDLFVTSKLWCADLSP 96 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg----------------~e~~lG~-~l~~~~~~~~~R~~~~i~tK~~~~~~~~ 96 (322)
++.+....+.+.|-+.|+.+|=|...-. |-.+..- .|+.. +. ....++|+|=. .+.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~-A~--~gkPvilStGm----atl 145 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKI-AR--FGKPVILSTGM----ATL 145 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHH-Hh--cCCcEEEECCC----CCH
Confidence 6778888999999999999986654321 1111111 11111 11 23346666654 367
Q ss_pred HHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 041428 97 DRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKL 173 (322)
Q Consensus 97 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l 173 (322)
+.+..+++...+ -|.+.-++.++|+...+... ...--+.++..|++.=. .-||+|+|+....
T Consensus 146 ~Ei~~Av~~i~~-~G~~~~~i~llhC~s~YP~~-------------~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~ 207 (329)
T TIGR03569 146 EEIEAAVGVLRD-AGTPDSNITLLHCTTEYPAP-------------FEDVNLNAMDTLKEAFD-LPVGYSDHTLGIE 207 (329)
T ss_pred HHHHHHHHHHHH-cCCCcCcEEEEEECCCCCCC-------------cccCCHHHHHHHHHHhC-CCEEECCCCccHH
Confidence 788888887753 34321259999997543221 11112333444444322 4699999986543
No 158
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=29.90 E-value=63 Score=22.28 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=20.5
Q ss_pred ccHHHHHHHHHHHHHcCCccEEEecCC
Q 041428 142 FDMEGVWREMEKLVKDGLVRDVGVCNF 168 (322)
Q Consensus 142 ~~~~~~~~~L~~l~~~Gkir~iGvs~~ 168 (322)
.+...+-..|+.|++.|+|+.+...+.
T Consensus 26 ~s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 26 ISPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp --HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred cCHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 456778888999999999999987665
No 159
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=29.82 E-value=2.3e+02 Score=24.81 Aligned_cols=86 Identities=9% Similarity=0.194 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcC---------CCHHHHHHHHhhhcC-CEEecCCCCHHH
Q 041428 198 DKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLN---------KSPGQILLKWGIHRG-TSVIPKSTHPDR 267 (322)
Q Consensus 198 ~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~---------~s~~qlal~~~l~~~-~~~i~g~~~~~~ 267 (322)
.++....++.|+..++++.+.. -.....+..+|++.| .++.++ +.++ ..| .++|+.+.. ..
T Consensus 75 ~~l~~~l~~~gv~~vv~GdI~s------~~qr~~~e~vc~~~gl~~~~PLW~~d~~~l-~e~i-~~Gf~aiIv~v~~-~g 145 (222)
T TIGR00289 75 EDLAGQLGELDVEALCIGAIES------NYQKSRIDKVCRELGLKSIAPLWHADPEKL-MYEV-AEKFEVIIVSVSA-MG 145 (222)
T ss_pred HHHHHHHHHcCCCEEEECcccc------HHHHHHHHHHHHHcCCEEeccccCCCHHHH-HHHH-HcCCeEEEEEEcc-CC
Confidence 5677777777888888776654 223456777777765 455565 4654 667 555555443 23
Q ss_pred HHHhHhccCCCCCHHHHHHHHccccCC
Q 041428 268 IKENIKAFGWEIPEHDFQTLCSMTDQK 294 (322)
Q Consensus 268 l~~nl~a~~~~L~~ee~~~l~~~~~~~ 294 (322)
|.+. -++..|+.+.++.|.++.++.
T Consensus 146 L~~~--~LGr~id~~~~~~L~~l~~~~ 170 (222)
T TIGR00289 146 LDES--WLGRRIDKECIDDLKRLNEKY 170 (222)
T ss_pred CChH--HcCCccCHHHHHHHHHHHhhc
Confidence 4433 355689999998888765543
No 160
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=29.33 E-value=4.5e+02 Score=24.14 Aligned_cols=150 Identities=15% Similarity=0.196 Sum_probs=87.7
Q ss_pred ChhHHHHHHHHHHHcCCCeEecCCCcCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCCc
Q 041428 35 GDEAFKSVFTAIVEGGYRHIDTAKQYGVQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQLDY 114 (322)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~ 114 (322)
+.++..+.+..+.+.|++.|=.--.-..+...=+++++. .+ ++-|..=.. ..++++.++ .++.|. .
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~d~~~v~~vr~~----~~--~~~l~vDaN-~~~~~~~a~-----~~~~l~--~ 197 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKITPQIMHQLVKLRRLR----FP--QIPLVIDAN-ESYDLQDFP-----RLKELD--R 197 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeCCchhHHHHHHHHHh----CC--CCcEEEECC-CCCCHHHHH-----HHHHHh--h
Confidence 345666777778889998873211001122233344443 22 333333321 234444421 134433 2
Q ss_pred cceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHhhcCCCCceeceeeCC
Q 041428 115 LDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVR-DVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHP 193 (322)
Q Consensus 115 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~ 193 (322)
.++.++-.|-+ .+-++.+.+|++...+. ..|=|.++...+..+++.... +++|+....
T Consensus 198 ~~~~~iEeP~~-------------------~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~--dvi~~d~~~ 256 (324)
T TIGR01928 198 YQLLYIEEPFK-------------------IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNV--KVINIKPGR 256 (324)
T ss_pred CCCcEEECCCC-------------------hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCC--CEEEeCcch
Confidence 45666665532 24467788888876655 556777788888888876554 777776544
Q ss_pred CC---CcHHHHHHHHHcCceEEEeccCCC
Q 041428 194 GW---RNDKILEACKKNGIHVTAYSPLGS 219 (322)
Q Consensus 194 ~~---~~~~ll~~~~~~gi~via~~pl~~ 219 (322)
.- .-..+...|+++|+.++..+.+.+
T Consensus 257 ~GGit~~~~~~~~A~~~gi~~~~~~~~es 285 (324)
T TIGR01928 257 LGGLTEVQKAIETCREHGAKVWIGGMLET 285 (324)
T ss_pred hcCHHHHHHHHHHHHHcCCeEEEcceEcc
Confidence 32 226899999999999998765543
No 161
>PRK05588 histidinol-phosphatase; Provisional
Probab=29.29 E-value=4e+02 Score=23.45 Aligned_cols=80 Identities=11% Similarity=0.199 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHcCCCeEecCCCcC--C--H----HHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHH
Q 041428 37 EAFKSVFTAIVEGGYRHIDTAKQYG--V--Q----ENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQ 108 (322)
Q Consensus 37 ~~~~~~l~~Al~~Gi~~~DTA~~Yg--~--e----~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~ 108 (322)
....+.+++|.+.|+..+ .+++.. . . ..+-..++..-+ .+.-+|.+..-+ +..++ -...+++.|+
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i~~--~~~~~I~~GiE~---~~~~~-~~~~~~~~l~ 88 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKYSK--YRNNKLLLGIEL---GMEKD-LIEENKELIN 88 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHHHH--HhcCCcceEEEe---cccCC-CHHHHHHHHh
Confidence 346789999999999998 776631 0 0 011122221100 112344444444 23333 3556677777
Q ss_pred HhCCCccceeEeecCC
Q 041428 109 ELQLDYLDLYLIHWPF 124 (322)
Q Consensus 109 ~Lg~d~iDl~~lH~p~ 124 (322)
..+.|++ +.-+|+..
T Consensus 89 ~~~~D~v-igSvH~~~ 103 (255)
T PRK05588 89 KYEFDYV-IGSIHLVD 103 (255)
T ss_pred hCCCCeE-EEeEEeeC
Confidence 7777776 68889854
No 162
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=29.17 E-value=3.1e+02 Score=22.23 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=66.5
Q ss_pred CCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCc-cEEEecCCCHH
Q 041428 93 DLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLV-RDVGVCNFTLK 171 (322)
Q Consensus 93 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gki-r~iGvs~~~~~ 171 (322)
|...-.+++.+..-|+..|-+.+|+=. |..+ +.+..+.-..+.+.+.+|.. +-|-+|.....
T Consensus 6 DhaG~~lK~~l~~~L~~~g~eV~D~G~-~~~~----------------~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG 68 (144)
T TIGR00689 6 DHAGLELKSEIIEHLKQKGHEVIDCGT-LYDE----------------RVDYPDYAKLVADKVVAGEVSLGILICGTGIG 68 (144)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEcCC-CCCC----------------CCChHHHHHHHHHHHHcCCCceEEEEcCCcHH
Confidence 444567899999999999988888732 1111 13456777888888899998 78888888887
Q ss_pred HHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHH-cCceEEEec
Q 041428 172 KLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKK-NGIHVTAYS 215 (322)
Q Consensus 172 ~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~-~gi~via~~ 215 (322)
....+.+..++.-..+ .+.....++++ ++..|++++
T Consensus 69 ~siaANK~~GIraa~~--------~d~~~A~~ar~hNnaNVl~lG 105 (144)
T TIGR00689 69 MSIAANKFKGIRAALC--------VDEYTAALARQHNDANVLCLG 105 (144)
T ss_pred HHHHHhcCCCeEEEEE--------CCHHHHHHHHHhcCCcEEEEC
Confidence 7777776655432222 23345555664 477788855
No 163
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=29.15 E-value=3.5e+02 Score=22.77 Aligned_cols=74 Identities=14% Similarity=0.220 Sum_probs=35.2
Q ss_pred CcceeecccCChhHHHHHHHHHH-HcCCCeEecCCCcCCHHHHHHHHHHHHhcCCC-CCcEEEEe--------cCCCCCC
Q 041428 25 PAVGLGTWKSGDEAFKSVFTAIV-EGGYRHIDTAKQYGVQENIGLALKEAMQTGIQ-RKDLFVTS--------KLWCADL 94 (322)
Q Consensus 25 s~lglG~~~~~~~~~~~~l~~Al-~~Gi~~~DTA~~Yg~e~~lG~~l~~~~~~~~~-R~~~~i~t--------K~~~~~~ 94 (322)
..|.-++...+.+ ..+.++.|. ..||-.| |=+.|.-|+ +|+.+...+| -...||.- |++....
T Consensus 24 ~~I~T~Gs~i~~~-~i~~i~~~~~~rgVIIf-TDpD~~Gek-----IRk~i~~~vp~~khafi~~~~a~~~~~~iGVE~A 96 (174)
T TIGR00334 24 DVIETNGSALKDE-TINLIKKAQKKQGVIIL-TDPDFPGEK-----IRKKIEQHLPGYENCFIPKHLAKPNKKKIGVEEA 96 (174)
T ss_pred eEEEECCCccCHH-HHHHHHHHhhcCCEEEE-eCCCCchHH-----HHHHHHHHCCCCeEEeeeHHhcCcCCCCcccCCC
Confidence 3344444444444 345555555 4676544 667775333 3333222222 33455552 2344455
Q ss_pred ChHHHHHHHHH
Q 041428 95 SPDRVRSALNN 105 (322)
Q Consensus 95 ~~~~i~~~~~~ 105 (322)
+++.|++++++
T Consensus 97 s~e~I~~AL~~ 107 (174)
T TIGR00334 97 SVEAIIAALEN 107 (174)
T ss_pred CHHHHHHHHHH
Confidence 66666666543
No 164
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=29.01 E-value=5e+02 Score=25.36 Aligned_cols=146 Identities=13% Similarity=0.123 Sum_probs=75.4
Q ss_pred CCcCCHHHHHHHHHHHHhcCCC-CCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCC
Q 041428 58 KQYGVQENIGLALKEAMQTGIQ-RKDLFVTSKLWCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKD 136 (322)
Q Consensus 58 ~~Yg~e~~lG~~l~~~~~~~~~-R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~ 136 (322)
-.||.++.+-++|++..+. .+ .+-++|.|-+- ...--+.+..-+++.-++.. -+.++.+|.|.......
T Consensus 106 ~VfGg~~kL~~aI~~~~~~-~~~p~~I~V~tTC~-~elIGDDi~~v~~~~~~~~~--~~~vi~v~tpgf~g~s~------ 175 (461)
T TIGR01860 106 VVFGGEKQLEKSIHEAFDE-FPDIKRMIVYTTCP-TALIGDDIKAVAKKVQKELP--DVDIFTVECPGFAGVSQ------ 175 (461)
T ss_pred eeeCcHHHHHHHHHHHHHh-CCCCCEEEEEccCc-hhhhcCCHHHHHHHHHHhcC--CCcEEEEeCCCcCCccc------
Confidence 3477888899999887554 23 34577877552 22222334433333333321 36899999987653100
Q ss_pred CccccccHHHHHHHH-HHH--------HHcCCccEEEecCC--CHHHHHHHHhhcCCCCcee--------------ceee
Q 041428 137 GEVLEFDMEGVWREM-EKL--------VKDGLVRDVGVCNF--TLKKLNKLLNFAKTKPSVC--------------QMEM 191 (322)
Q Consensus 137 ~~~~~~~~~~~~~~L-~~l--------~~~Gkir~iGvs~~--~~~~l~~~~~~~~~~~~~~--------------q~~~ 191 (322)
......+.+++ +++ +..++|--||=.++ +.+.+.++++..++++... ...+
T Consensus 176 ----~~G~~~a~~~~~~~~v~~~~~~~~~~~~VNiiG~~~~~gd~~el~~lL~~~Gi~v~~~~~g~~t~~ei~~~~~A~l 251 (461)
T TIGR01860 176 ----SKGHHVLNIGWINEKVGTLEPEITSEYTINVIGDYNIQGDTQVLQKYWDKMGIQVIAHFTGNGTYDDLRCMHRAQL 251 (461)
T ss_pred ----chHHHHHHHHHHHHHhcccCCCCCCCCcEEEECCCCCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHhcccCcE
Confidence 00111122221 221 12467878874443 3567888888877654221 1112
Q ss_pred CCCC-Cc--HHHHHHH-HHcCceEEEeccC
Q 041428 192 HPGW-RN--DKILEAC-KKNGIHVTAYSPL 217 (322)
Q Consensus 192 ~~~~-~~--~~ll~~~-~~~gi~via~~pl 217 (322)
|+.. +. ..+.++. ++.|++.+..+|+
T Consensus 252 nlv~~~~~~~~~A~~Leer~GiP~~~~~p~ 281 (461)
T TIGR01860 252 NVVNCARSAGYIANELKKRYGIPRLDVDTW 281 (461)
T ss_pred EEEECchHHHHHHHHHHHHhCCCeecCCcC
Confidence 2221 11 2233444 3669998877765
No 165
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=28.98 E-value=4.5e+02 Score=24.01 Aligned_cols=51 Identities=12% Similarity=0.099 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHhhcC-----CCCceeceeeCCCCCc------HHHHHHHHHcCceEEEeccC
Q 041428 167 NFTLKKLNKLLNFAK-----TKPSVCQMEMHPGWRN------DKILEACKKNGIHVTAYSPL 217 (322)
Q Consensus 167 ~~~~~~l~~~~~~~~-----~~~~~~q~~~~~~~~~------~~ll~~~~~~gi~via~~pl 217 (322)
..+.+.+++.++... .+..++-.+.||.-.- .+++++|+++|+-++.=...
T Consensus 129 ~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y 190 (363)
T PF00155_consen 129 HLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAY 190 (363)
T ss_dssp EETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred cccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeece
Confidence 446777777776632 1122222233333221 45677788888888874333
No 166
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=28.92 E-value=1.9e+02 Score=24.85 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=31.6
Q ss_pred cEEEecCC-CHHHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEE
Q 041428 161 RDVGVCNF-TLKKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTA 213 (322)
Q Consensus 161 r~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via 213 (322)
-.||..+. +.++++++++.+. ++-.+|. -+.+++++|+++|+.++.
T Consensus 60 ~~vGAGTV~~~e~a~~a~~aGA------~FivSP~-~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 60 LLVGAGTVLTAEQAEAAIAAGA------QFIVSPG-FDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp SEEEEES--SHHHHHHHHHHT-------SEEEESS---HHHHHHHHHHTSEEEE
T ss_pred CeeEEEeccCHHHHHHHHHcCC------CEEECCC-CCHHHHHHHHHcCCcccC
Confidence 45888877 6888888888754 2333332 347899999999999986
No 167
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=28.87 E-value=4.4e+02 Score=23.89 Aligned_cols=36 Identities=11% Similarity=0.031 Sum_probs=29.2
Q ss_pred EcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCeEecC
Q 041428 17 KLLSGHTIPAVGLGTWKSGDEAFKSVFTAIVEGGYRHIDTA 57 (322)
Q Consensus 17 ~l~tg~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DTA 57 (322)
+|++|.+.+.+.| +.++..++++...+.||..|+..
T Consensus 11 TlRDG~Q~~~~~~-----s~e~k~~ia~~L~~~Gv~~IEvg 46 (287)
T PRK05692 11 GPRDGLQNEKRFI-----PTADKIALIDRLSAAGLSYIEVA 46 (287)
T ss_pred CCCccccCcCCCc-----CHHHHHHHHHHHHHcCCCEEEeC
Confidence 5688888876554 55788889999899999999986
No 168
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=28.67 E-value=5.9e+02 Score=25.21 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=29.4
Q ss_pred EcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCeEecCC
Q 041428 17 KLLSGHTIPAVGLGTWKSGDEAFKSVFTAIVEGGYRHIDTAK 58 (322)
Q Consensus 17 ~l~tg~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DTA~ 58 (322)
+|++|.+.+.+.| +.++-.++.+...+.||.+|....
T Consensus 8 TLRDG~Q~~g~~~-----s~e~K~~ia~~L~~~GV~~IEvG~ 44 (494)
T TIGR00973 8 TLRDGEQSPGASL-----TVEEKLQIALALERLGVDIIEAGF 44 (494)
T ss_pred CCCccCcCCCCCc-----CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 6788888877655 447778888888899999999753
No 169
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=28.51 E-value=2.6e+02 Score=22.19 Aligned_cols=18 Identities=11% Similarity=0.289 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCCeEecC
Q 041428 40 KSVFTAIVEGGYRHIDTA 57 (322)
Q Consensus 40 ~~~l~~Al~~Gi~~~DTA 57 (322)
...+..+++.|+|+||.=
T Consensus 31 ~~~i~~qL~~GvR~~dir 48 (135)
T smart00148 31 VEGYIQALDHGCRCVELD 48 (135)
T ss_pred HHHHHHHHHhCCCEEEEE
Confidence 468899999999999943
No 170
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=28.50 E-value=1.2e+02 Score=28.63 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCc--HHHHHHHHHcCceEEEeccCCCCCCC
Q 041428 146 GVWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRN--DKILEACKKNGIHVTAYSPLGSQGAG 223 (322)
Q Consensus 146 ~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~via~~pl~~~G~l 223 (322)
+-..++.+|.+.|.+.+|-.-.-.--.+..+...-.-.|. -.|.....+ +.+++.|+++||.||.-+- |.-
T Consensus 10 D~~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~NaG----g~n 82 (362)
T PF07287_consen 10 DRPDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNAG----GLN 82 (362)
T ss_pred CcHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeCC----CCC
Confidence 3455677888899999986543332222111111111111 112111111 6799999999999988642 311
Q ss_pred CCCCCCHHHHHHHHhcCCC
Q 041428 224 RDLIHDPTVERIAKKLNKS 242 (322)
Q Consensus 224 ~~~~~~~~l~~la~~~~~s 242 (322)
+.--.+.+++++++.|.+
T Consensus 83 -p~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 83 -PAGCADIVREIARELGLS 100 (362)
T ss_pred -HHHHHHHHHHHHHhcCCC
Confidence 111245677777777654
No 171
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=28.46 E-value=2.7e+02 Score=24.71 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=58.0
Q ss_pred CChhHHHHHHHHHHHcCCCeEecCCCcC------CHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC---Ch--------
Q 041428 34 SGDEAFKSVFTAIVEGGYRHIDTAKQYG------VQENIGLALKEAMQTGIQRKDLFVTSKLWCADL---SP-------- 96 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg------~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~---~~-------- 96 (322)
.+..|+.+++.-.+.+||+.==.++.-| .|.-+.+++.-.-..|.||+++.=..++++.+. +|
T Consensus 28 L~e~eANemlAlL~~~gI~A~K~~~~~g~~~l~Ve~~~fa~Av~iL~~~GlPr~~f~~l~d~Fp~dgLVsSP~eEkaR~~ 107 (246)
T COG4669 28 LSEKEANEMLALLMSHGINAEKKADKDGGTSLLVEESDFAEAVEILNQNGLPRKKFTTLGDIFPKDGLVSSPTEEKARLN 107 (246)
T ss_pred CCHhHHHHHHHHHHHcCCcceeeccCCCceEEEEcHHHHHHHHHHHHhcCCCCCCCCcHHHhCCcccccCCcHHHHHHHH
Confidence 6788999999999999999887777766 377777777655555899988766666654331 11
Q ss_pred HHHHHHHHHHHHHhC
Q 041428 97 DRVRSALNNTLQELQ 111 (322)
Q Consensus 97 ~~i~~~~~~SL~~Lg 111 (322)
..+.++++++|+++.
T Consensus 108 ~~~eQ~le~tLs~mD 122 (246)
T COG4669 108 YAKEQQLEQTLSKMD 122 (246)
T ss_pred HHHHHHHHHHHHhcC
Confidence 336778899998885
No 172
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.24 E-value=5e+02 Score=24.33 Aligned_cols=149 Identities=14% Similarity=0.184 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHhc-CCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhC-CCccceeEeecCCCCCCCCCCCCCCCcc
Q 041428 62 VQENIGLALKEAMQT-GIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQ-LDYLDLYLIHWPFRLKEGASRPPKDGEV 139 (322)
Q Consensus 62 ~e~~lG~~l~~~~~~-~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~~~~ 139 (322)
+-..+-++++..... |+....+.|+|=. .+..+++-.+.-+++|+ .+....+-||.+++.......+..
T Consensus 163 n~~~v~~~i~~l~~~~~i~~r~itvST~G-----~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~---- 233 (345)
T PRK14457 163 NIDEVLAAIRCLNQDLGIGQRRITVSTVG-----VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSA---- 233 (345)
T ss_pred CHHHHHHHHHHHhcccCCccCceEEECCC-----chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCc----
Confidence 344556666654221 4444567777732 22334444444444544 234467889988764331111110
Q ss_pred ccccHHHHHHHHHH-HHHcCC---ccEEEecCC--CHHHHHHHHhhcC-CCCceeceeeCCCCC-----c-----HHHHH
Q 041428 140 LEFDMEGVWREMEK-LVKDGL---VRDVGVCNF--TLKKLNKLLNFAK-TKPSVCQMEMHPGWR-----N-----DKILE 202 (322)
Q Consensus 140 ~~~~~~~~~~~L~~-l~~~Gk---ir~iGvs~~--~~~~l~~~~~~~~-~~~~~~q~~~~~~~~-----~-----~~ll~ 202 (322)
...+++++++++.+ +.+.|+ ++++=|.++ +.+.++++.+... .+..++=++||++.. . ....+
T Consensus 234 ~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~ 313 (345)
T PRK14457 234 KNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQR 313 (345)
T ss_pred cCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHH
Confidence 01357788888766 455564 566656544 4566666665543 344566677777542 1 23556
Q ss_pred HHHHcCceEEEeccCCC
Q 041428 203 ACKKNGIHVTAYSPLGS 219 (322)
Q Consensus 203 ~~~~~gi~via~~pl~~ 219 (322)
..+++|+.+......|.
T Consensus 314 ~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 314 VLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHCCCeEEEeCCCCC
Confidence 67778999988777654
No 173
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=28.00 E-value=52 Score=30.62 Aligned_cols=68 Identities=19% Similarity=0.212 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCC-----ccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEEeccC
Q 041428 145 EGVWREMEKLVKDGL-----VRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSPL 217 (322)
Q Consensus 145 ~~~~~~L~~l~~~Gk-----ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl 217 (322)
.-.++.|++|+++|- .-|+|..+|.+-+.+.+.+. .......++ -....+.+..+|++|=.|+|-++.
T Consensus 186 HFt~~LL~kLk~kGv~~afvTLHVGaGTF~pV~~~~i~eH-~MH~E~~~v----~~eta~~i~~~k~~GgRIiaVGTT 258 (348)
T COG0809 186 HFTEELLEKLKAKGVEIAFVTLHVGAGTFRPVKVENIEEH-KMHSEYYEV----PQETADAINAAKARGGRIIAVGTT 258 (348)
T ss_pred CCCHHHHHHHHHCCceEEEEEEEecccccccceecccccc-ccchhheec----CHHHHHHHHHHHHcCCeEEEEcch
Confidence 446888999999986 66889999987666554332 111122222 112278999999999999996654
No 174
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.95 E-value=5.7e+02 Score=24.89 Aligned_cols=67 Identities=16% Similarity=0.445 Sum_probs=37.4
Q ss_pred cccHHHHHHHHHHHHHcCCccEEEecC-----C-----CHHHHHHHHhhcCCCCceeceee---CCCCCcHHHHHHHHHc
Q 041428 141 EFDMEGVWREMEKLVKDGLVRDVGVCN-----F-----TLKKLNKLLNFAKTKPSVCQMEM---HPGWRNDKILEACKKN 207 (322)
Q Consensus 141 ~~~~~~~~~~L~~l~~~Gkir~iGvs~-----~-----~~~~l~~~~~~~~~~~~~~q~~~---~~~~~~~~ll~~~~~~ 207 (322)
..+.+++.+.++.+.+.| ++.|-+.. | +...+.++++.....+....+.+ ++..-..++++..++.
T Consensus 183 sr~~e~Il~ei~~l~~~G-~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~ 261 (459)
T PRK14338 183 SRPLAEIVEEVRRIAARG-AKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAVARL 261 (459)
T ss_pred cCCHHHHHHHHHHHHHCC-CeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHHhcc
Confidence 467899999999999997 55554432 2 12235555544221111112222 3333347788888775
Q ss_pred C
Q 041428 208 G 208 (322)
Q Consensus 208 g 208 (322)
+
T Consensus 262 ~ 262 (459)
T PRK14338 262 P 262 (459)
T ss_pred c
Confidence 4
No 175
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=27.59 E-value=3.8e+02 Score=22.71 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=33.4
Q ss_pred HHHHHcCC-ccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCc---HHHHHHHHHcCc
Q 041428 152 EKLVKDGL-VRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRN---DKILEACKKNGI 209 (322)
Q Consensus 152 ~~l~~~Gk-ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi 209 (322)
.-|+..|. +.++|. +-+.+.+.+.+.. .+|+++.+.+...... .++++.+++.|.
T Consensus 106 ~~l~~~G~~vi~LG~-~vp~e~~v~~~~~--~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 106 TMLRANGFDVIDLGR-DVPIDTVVEKVKK--EKPLMLTGSALMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred HHHHhCCcEEEECCC-CCCHHHHHHHHHH--cCCCEEEEccccccCHHHHHHHHHHHHHcCC
Confidence 34455665 666774 4455666666554 4457777766554443 668888888753
No 176
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.51 E-value=5e+02 Score=25.04 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=20.1
Q ss_pred cccHHHHHHHHHHHHHcCCccEEEec
Q 041428 141 EFDMEGVWREMEKLVKDGLVRDVGVC 166 (322)
Q Consensus 141 ~~~~~~~~~~L~~l~~~Gkir~iGvs 166 (322)
..+.+.+++.++.+++.| ++.|-+.
T Consensus 174 sr~~e~V~~Ei~~l~~~g-~~eI~l~ 198 (437)
T PRK14331 174 SRRLGSILDEVQWLVDDG-VKEIHLI 198 (437)
T ss_pred cCCHHHHHHHHHHHHHCC-CeEEEEe
Confidence 456899999999999987 6677654
No 177
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=27.31 E-value=3.8e+02 Score=24.93 Aligned_cols=64 Identities=8% Similarity=-0.026 Sum_probs=41.6
Q ss_pred HHHHHcCCccEEEecCCCHHHHHHHHhhcC-----CCCceeceeeCCCCCcHHHHHHHHHcCceEEEec
Q 041428 152 EKLVKDGLVRDVGVCNFTLKKLNKLLNFAK-----TKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYS 215 (322)
Q Consensus 152 ~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~-----~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~ 215 (322)
...-+.|=+..||....+++++++.++..+ -++-++-+.+.......+.++.+.+.++.++..+
T Consensus 21 aAVS~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~ 89 (320)
T cd04743 21 VAVAEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIA 89 (320)
T ss_pred HHHHhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEc
Confidence 344577888889988888888877764432 2333333222111112679999999999998865
No 178
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=27.27 E-value=4.7e+02 Score=23.69 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=52.9
Q ss_pred CCChHHHHHHHHHHHHHhCC-----Ccccee-------------EeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHH
Q 041428 93 DLSPDRVRSALNNTLQELQL-----DYLDLY-------------LIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKL 154 (322)
Q Consensus 93 ~~~~~~i~~~~~~SL~~Lg~-----d~iDl~-------------~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 154 (322)
......+++.++..|+||++ +.|+-+ ++|.|+-.--.+ ++ ....+...+-+-++.-++
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDE--PF--SGLDPVN~elLk~~I~~l 176 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDE--PF--SGLDPVNVELLKDAIFEL 176 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecC--Cc--cCCChhhHHHHHHHHHHH
Confidence 45667888888888888874 233222 466664311100 00 001124456677789999
Q ss_pred HHcCCccEEEecCCCHHHHHHHHhh
Q 041428 155 VKDGLVRDVGVCNFTLKKLNKLLNF 179 (322)
Q Consensus 155 ~~~Gkir~iGvs~~~~~~l~~~~~~ 179 (322)
+++|. .|=+|+|..++++++++.
T Consensus 177 k~~Ga--tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 177 KEEGA--TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred HhcCC--EEEEecchHHHHHHHhhh
Confidence 99998 488999999999999875
No 179
>PLN02321 2-isopropylmalate synthase
Probab=27.26 E-value=7e+02 Score=25.65 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=27.4
Q ss_pred EcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCeEecCC
Q 041428 17 KLLSGHTIPAVGLGTWKSGDEAFKSVFTAIVEGGYRHIDTAK 58 (322)
Q Consensus 17 ~l~tg~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DTA~ 58 (322)
+|++|.+-+.+. ++.++-.++.+...+.||..|+...
T Consensus 93 TLRDGeQ~~g~~-----~s~eeKl~Ia~~L~~lGVd~IEvGf 129 (632)
T PLN02321 93 TLRDGEQSPGAT-----LTSKEKLDIARQLAKLGVDIIEAGF 129 (632)
T ss_pred CCCccccCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 345566655544 4557888999998899999999764
No 180
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=27.24 E-value=2.8e+02 Score=25.44 Aligned_cols=142 Identities=13% Similarity=0.177 Sum_probs=74.1
Q ss_pred cceeecccCChhHHHHHHHHHHHcCCCeEe----------cCCCcC-----CHHHHHHHHHHHHhcCCCCCcEEEEecCC
Q 041428 26 AVGLGTWKSGDEAFKSVFTAIVEGGYRHID----------TAKQYG-----VQENIGLALKEAMQTGIQRKDLFVTSKLW 90 (322)
Q Consensus 26 ~lglG~~~~~~~~~~~~l~~Al~~Gi~~~D----------TA~~Yg-----~e~~lG~~l~~~~~~~~~R~~~~i~tK~~ 90 (322)
++++=.++.+.+...++...+.+.|+..|| +...|| .-..+.+.++...+. -++-|+.|+-
T Consensus 55 p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~----~~~pvsvKiR 130 (309)
T PF01207_consen 55 PLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKA----VPIPVSVKIR 130 (309)
T ss_dssp TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-----SSEEEEEEE
T ss_pred ceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcc----cccceEEecc
Confidence 344333445667777777777778999999 445566 355666666654221 1255666762
Q ss_pred C-CCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCC-
Q 041428 91 C-ADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNF- 168 (322)
Q Consensus 91 ~-~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~- 168 (322)
. .+.+++...+ +-+.|...| +|.+.+|.-..... .....-|+.+.++++.=.|--||=.+.
T Consensus 131 ~g~~~~~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~-------------~~~~a~w~~i~~i~~~~~ipvi~NGdI~ 193 (309)
T PF01207_consen 131 LGWDDSPEETIE-FARILEDAG---VSAITVHGRTRKQR-------------YKGPADWEAIAEIKEALPIPVIANGDIF 193 (309)
T ss_dssp SECT--CHHHHH-HHHHHHHTT-----EEEEECS-TTCC-------------CTS---HHHHHHCHHC-TSEEEEESS--
T ss_pred cccccchhHHHH-HHHHhhhcc---cceEEEecCchhhc-------------CCcccchHHHHHHhhcccceeEEcCccC
Confidence 1 1212333333 444566666 89999998544322 112566788888888877777765554
Q ss_pred CHHHHHHHHhhcCCCCceecee
Q 041428 169 TLKKLNKLLNFAKTKPSVCQME 190 (322)
Q Consensus 169 ~~~~l~~~~~~~~~~~~~~q~~ 190 (322)
+.+.+.++++..+ .+-+++.
T Consensus 194 s~~d~~~~~~~tg--~dgvMig 213 (309)
T PF01207_consen 194 SPEDAERMLEQTG--ADGVMIG 213 (309)
T ss_dssp SHHHHHHHCCCH---SSEEEES
T ss_pred CHHHHHHHHHhcC--CcEEEEc
Confidence 4666777666533 2445543
No 181
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=27.21 E-value=6.1e+02 Score=24.96 Aligned_cols=160 Identities=8% Similarity=-0.056 Sum_probs=76.0
Q ss_pred ChhHHHHHHHHHH-HcCCCeEecCCCc--CCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhC
Q 041428 35 GDEAFKSVFTAIV-EGGYRHIDTAKQY--GVQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQ 111 (322)
Q Consensus 35 ~~~~~~~~l~~Al-~~Gi~~~DTA~~Y--g~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg 111 (322)
+.+.+.+-|+... +.|+++|.-++.- .+.+.+-+.++..++.+...-.+.+.|.+..-..+ ..+-+.+++.|
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d-----~ell~~l~~aG 297 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRD-----ADILHLYRRAG 297 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCC-----HHHHHHHHHhC
Confidence 5566666666665 4699987544332 24334444444443222011122334443110112 23334455666
Q ss_pred CCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccE----EEecCCCHHHHHHHHhhcC-CCCce
Q 041428 112 LDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRD----VGVCNFTLKKLNKLLNFAK-TKPSV 186 (322)
Q Consensus 112 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~----iGvs~~~~~~l~~~~~~~~-~~~~~ 186 (322)
..++-+= +...++.. .....+ ....++..++++.+++.|..-. +|+-+-+.+.+++.++... .+++.
T Consensus 298 ~~~v~iG-iES~~~~~---L~~~~K----~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~ 369 (497)
T TIGR02026 298 LVHISLG-TEAAAQAT---LDHFRK----GTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQ 369 (497)
T ss_pred CcEEEEc-cccCCHHH---HHHhcC----CCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCc
Confidence 5444331 11111100 000011 1345778889999999986333 3556666777766655432 33443
Q ss_pred eceeeCCCC--CcHHHHHHHHHcCc
Q 041428 187 CQMEMHPGW--RNDKILEACKKNGI 209 (322)
Q Consensus 187 ~q~~~~~~~--~~~~ll~~~~~~gi 209 (322)
+++ +.+. +..++.+.+++.+.
T Consensus 370 ~~~--~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 370 ANW--LMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred eEE--EEecCCCCcHHHHHHHhhcc
Confidence 333 3333 33667777777653
No 182
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=27.11 E-value=3e+02 Score=21.37 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=44.0
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCC------ccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHH
Q 041428 80 RKDLFVTSKLWCADLSPDRVRSALNNTLQELQLD------YLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEK 153 (322)
Q Consensus 80 R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d------~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 153 (322)
|=-+.|+.|+.........++..+.++.+.+..+ ..|++++-.+... +.+..++-+.|..
T Consensus 47 RlG~sVSKKv~~kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~--------------~~~~~~l~~~l~~ 112 (118)
T PRK01492 47 FLGIKVSRKLNKKAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFE--------------EINFSHLNYELSK 112 (118)
T ss_pred eEEEEEecccCCchhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcc--------------cCCHHHHHHHHHH
Confidence 5567888897655666788999999999887642 5789998776543 2455666666666
Q ss_pred HH
Q 041428 154 LV 155 (322)
Q Consensus 154 l~ 155 (322)
|.
T Consensus 113 l~ 114 (118)
T PRK01492 113 II 114 (118)
T ss_pred HH
Confidence 54
No 183
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=27.03 E-value=3.1e+02 Score=26.36 Aligned_cols=78 Identities=18% Similarity=0.073 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCc---HHHHHHHHHcCceEEEeccCCCCC
Q 041428 145 EGVWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRN---DKILEACKKNGIHVTAYSPLGSQG 221 (322)
Q Consensus 145 ~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~gi~via~~pl~~~G 221 (322)
..++..++.+.++.-|....+-.-+...+.+.+.....+..++..+-||...- ..+.+.|+++|+.++.=.+++. +
T Consensus 113 G~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat-P 191 (396)
T COG0626 113 GGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT-P 191 (396)
T ss_pred chHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc-c
Confidence 57788888888888887777777666566555543234556778888887765 7799999999999999888876 5
Q ss_pred CC
Q 041428 222 AG 223 (322)
Q Consensus 222 ~l 223 (322)
.+
T Consensus 192 ~~ 193 (396)
T COG0626 192 VL 193 (396)
T ss_pred cc
Confidence 54
No 184
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.89 E-value=4.5e+02 Score=25.64 Aligned_cols=192 Identities=17% Similarity=0.196 Sum_probs=99.7
Q ss_pred cceeecccCChhHHHHHHHHHHHcCC-CeEec---CCCcC---------CHHHHHHHHHHHHhcCCCCCcEEEEecCCC-
Q 041428 26 AVGLGTWKSGDEAFKSVFTAIVEGGY-RHIDT---AKQYG---------VQENIGLALKEAMQTGIQRKDLFVTSKLWC- 91 (322)
Q Consensus 26 ~lglG~~~~~~~~~~~~l~~Al~~Gi-~~~DT---A~~Yg---------~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~- 91 (322)
...|||. +...++..+.....+.|+ +..|. |+.+= +++-+-..|++..+. +++-.+|.|=+..
T Consensus 7 i~T~GC~-~N~~DSe~m~~~L~~~G~~~~~~~~~eADvviiNTC~V~~~a~~k~~~~i~~~~~~--~p~~~iiVtGC~aq 83 (437)
T COG0621 7 IETLGCQ-MNLYDSERMAGLLEAAGYEELVEDPEEADVVIINTCAVREKAEQKVRSAIGELKKL--KPDAKIIVTGCLAQ 83 (437)
T ss_pred EEecCCC-ccHHHHHHHHHHHHHcCCccccCCcccCCEEEEecCeeeehHHHHHHHHHHHHHHh--CCCCEEEEeCCccc
Confidence 3456663 344455566666667788 55555 55541 244444444444222 3555666666521
Q ss_pred ----------------CCCChHHHHHHHHHHHHHhC--CCccceeE----eecCCCCCCCCC-----------------C
Q 041428 92 ----------------ADLSPDRVRSALNNTLQELQ--LDYLDLYL----IHWPFRLKEGAS-----------------R 132 (322)
Q Consensus 92 ----------------~~~~~~~i~~~~~~SL~~Lg--~d~iDl~~----lH~p~~~~~~~~-----------------~ 132 (322)
...+...+.+++++.+..-. ....|+.- -|-+.+...+.. -
T Consensus 84 ~~~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~v~I~eGCn~~CtfCii 163 (437)
T COG0621 84 AEEEILERAPEVDIVLGPQNKERLPEAIEKALRGKKEFVVVLSFPEEEKFDKLPPRREGGVRAFVKIQEGCNKFCTFCII 163 (437)
T ss_pred cCHHHHhhCCCceEEECCccHHHHHHHHHHHhhcccccccccccccccccccCCCCcCCCeEEEEEhhcCcCCCCCeeee
Confidence 12234556666666654322 12233321 122222000000 1
Q ss_pred CCCCCccccccHHHHHHHHHHHHHcCC---------ccEEEecCCC-HHHHHHHHhhcCCCCceeceeeCCCCCc---HH
Q 041428 133 PPKDGEVLEFDMEGVWREMEKLVKDGL---------VRDVGVCNFT-LKKLNKLLNFAKTKPSVCQMEMHPGWRN---DK 199 (322)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~L~~l~~~Gk---------ir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ 199 (322)
+..++..-+.+.+++++..++|+++|- +.++|..... ...+.++++...--+....++++..++. .+
T Consensus 164 P~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~ 243 (437)
T COG0621 164 PYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDD 243 (437)
T ss_pred eccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHH
Confidence 334555566789999999999999997 4455554321 1223333322111123455555555554 78
Q ss_pred HHHHHHHc-CceEEEeccCCCCC
Q 041428 200 ILEACKKN-GIHVTAYSPLGSQG 221 (322)
Q Consensus 200 ll~~~~~~-gi~via~~pl~~~G 221 (322)
+++..++. .+-=.-+-|+.+ |
T Consensus 244 lI~~~~~~~kv~~~lHlPvQs-G 265 (437)
T COG0621 244 LIEAIAETPKVCPHLHLPVQS-G 265 (437)
T ss_pred HHHHHhcCCcccccccCcccc-C
Confidence 99999885 555555667766 5
No 185
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=26.77 E-value=2.7e+02 Score=23.65 Aligned_cols=77 Identities=18% Similarity=0.140 Sum_probs=48.0
Q ss_pred eecccCChhHHHHHHHHHHHcCCCeEecCCCcC-CHHHHH--HHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHH
Q 041428 29 LGTWKSGDEAFKSVFTAIVEGGYRHIDTAKQYG-VQENIG--LALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNN 105 (322)
Q Consensus 29 lG~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~e~~lG--~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~ 105 (322)
+.+...+.++...+.+.|.++|..++=|+..|. .-..++ +.+++.+ +.+ +-.|....-.+.+.+.+-++.
T Consensus 123 ~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~-----~~~--v~ik~aGGikt~~~~l~~~~~ 195 (203)
T cd00959 123 LETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAV-----GGR--VGVKAAGGIRTLEDALAMIEA 195 (203)
T ss_pred EecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-----CCC--ceEEEeCCCCCHHHHHHHHHh
Confidence 444445678889999999999999999998885 111122 3344332 111 334442222266777777777
Q ss_pred HHHHhCC
Q 041428 106 TLQELQL 112 (322)
Q Consensus 106 SL~~Lg~ 112 (322)
...|+|+
T Consensus 196 g~~riG~ 202 (203)
T cd00959 196 GATRIGT 202 (203)
T ss_pred ChhhccC
Confidence 7777776
No 186
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=26.63 E-value=1.7e+02 Score=25.91 Aligned_cols=66 Identities=18% Similarity=0.381 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCC---------HHHHHHHHhhhcC--CEEecCCCCHH
Q 041428 198 DKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKS---------PGQILLKWGIHRG--TSVIPKSTHPD 266 (322)
Q Consensus 198 ~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s---------~~qlal~~~l~~~--~~~i~g~~~~~ 266 (322)
.++.++|+++||.+++ +|+.- +.+..+ .++++. ..--.|+++.+.+ +.+-.|+++.+
T Consensus 59 ~~L~~~~~~~gi~f~s-tpfd~----------~s~d~l-~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~ 126 (241)
T PF03102_consen 59 KELFEYCKELGIDFFS-TPFDE----------ESVDFL-EELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLE 126 (241)
T ss_dssp HHHHHHHHHTT-EEEE-EE-SH----------HHHHHH-HHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HH
T ss_pred HHHHHHHHHcCCEEEE-CCCCH----------HHHHHH-HHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHH
Confidence 6799999999999887 45532 222322 333321 1223556666654 66668999999
Q ss_pred HHHHhHhcc
Q 041428 267 RIKENIKAF 275 (322)
Q Consensus 267 ~l~~nl~a~ 275 (322)
++++.++.+
T Consensus 127 EI~~Av~~~ 135 (241)
T PF03102_consen 127 EIERAVEVL 135 (241)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988876
No 187
>PLN02775 Probable dihydrodipicolinate reductase
Probab=26.55 E-value=3.5e+02 Score=24.69 Aligned_cols=73 Identities=19% Similarity=0.179 Sum_probs=51.7
Q ss_pred HHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhhc
Q 041428 101 SALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFA 180 (322)
Q Consensus 101 ~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~ 180 (322)
..++..|..+..++.|++.+.. ..+..+.+.++.+.+.|+--=+|.+.|+.+++.++.+..
T Consensus 66 ~dl~~~l~~~~~~~~~~VvIDF-------------------T~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~ 126 (286)
T PLN02775 66 SEREAVLSSVKAEYPNLIVVDY-------------------TLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEES 126 (286)
T ss_pred ccHHHHHHHhhccCCCEEEEEC-------------------CChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcC
Confidence 3445666566556889777754 335788889999999999888999999999998887643
Q ss_pred CCCCceeceeeCC
Q 041428 181 KTKPSVCQMEMHP 193 (322)
Q Consensus 181 ~~~~~~~q~~~~~ 193 (322)
.+ +.++--++++
T Consensus 127 ~i-~vv~apNfSi 138 (286)
T PLN02775 127 GV-YAVIAPQMGK 138 (286)
T ss_pred Cc-cEEEECcccH
Confidence 33 3444444443
No 188
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.45 E-value=3e+02 Score=23.86 Aligned_cols=61 Identities=13% Similarity=0.026 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCC---ccEEEecCC-CHHHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEE
Q 041428 146 GVWREMEKLVKDGL---VRDVGVCNF-TLKKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTA 213 (322)
Q Consensus 146 ~~~~~L~~l~~~Gk---ir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via 213 (322)
...+.+++++++-. =-.||..+. +.++++.+++.+. ++-.+|. -..+++++|+++|+.++.
T Consensus 50 ~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA------~FivsP~-~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 50 FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGA------QFIVSPS-FNRETAKICNLYQIPYLP 114 (213)
T ss_pred cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCC------CEEECCC-CCHHHHHHHHHcCCCEEC
Confidence 45555666665421 135888877 6888888888754 2222332 337899999999988875
No 189
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=26.33 E-value=3.9e+02 Score=22.45 Aligned_cols=78 Identities=19% Similarity=0.178 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccc
Q 041428 63 QENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEF 142 (322)
Q Consensus 63 e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~ 142 (322)
|++.-.+|+++. ..-++.|.--+++..+....+++.+++.|+. +..=+.-+|.-+..
T Consensus 87 e~i~~~al~rA~----~~aDvIIIDEIGpMElks~~f~~~ve~vl~~---~kpliatlHrrsr~---------------- 143 (179)
T COG1618 87 EEIAIPALRRAL----EEADVIIIDEIGPMELKSKKFREAVEEVLKS---GKPLIATLHRRSRH---------------- 143 (179)
T ss_pred HHHhHHHHHHHh----hcCCEEEEecccchhhccHHHHHHHHHHhcC---CCcEEEEEecccCC----------------
Confidence 667777888762 2248999999998888888999999987754 44556778865442
Q ss_pred cHHHHHHHHHHHHHcCCccEE-EecCCC
Q 041428 143 DMEGVWREMEKLVKDGLVRDV-GVCNFT 169 (322)
Q Consensus 143 ~~~~~~~~L~~l~~~Gkir~i-Gvs~~~ 169 (322)
..++++++.|.+.-+ =..|.+
T Consensus 144 ------P~v~~ik~~~~v~v~lt~~NR~ 165 (179)
T COG1618 144 ------PLVQRIKKLGGVYVFLTPENRN 165 (179)
T ss_pred ------hHHHHhhhcCCEEEEEccchhh
Confidence 127788888888874 333443
No 190
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=26.30 E-value=63 Score=20.60 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=28.5
Q ss_pred HHHHHHhcCCCHHHHHHHHhhhcCCEEecCCCCHHHHHHhHhccCC
Q 041428 232 VERIAKKLNKSPGQILLKWGIHRGTSVIPKSTHPDRIKENIKAFGW 277 (322)
Q Consensus 232 l~~la~~~~~s~~qlal~~~l~~~~~~i~g~~~~~~l~~nl~a~~~ 277 (322)
++++|+..|+|++.+.-.+.-. .-++..+.+++.+.++.+++
T Consensus 2 i~dIA~~agvS~~TVSr~ln~~----~~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSRVLNGP----PRVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHHHHHTTC----SSSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHHHHHhCC----CCCCHHHHHHHHHHHHHHCC
Confidence 6789999999998876554433 24455566777776666554
No 191
>PRK00915 2-isopropylmalate synthase; Validated
Probab=26.26 E-value=6.6e+02 Score=24.99 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=30.3
Q ss_pred EEcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCeEecCC
Q 041428 16 FKLLSGHTIPAVGLGTWKSGDEAFKSVFTAIVEGGYRHIDTAK 58 (322)
Q Consensus 16 ~~l~tg~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DTA~ 58 (322)
.+|++|.+.+.+. ++.++..++.+...+.||..|+...
T Consensus 10 tTLRDG~Q~~g~~-----~s~e~K~~ia~~L~~~Gv~~IE~G~ 47 (513)
T PRK00915 10 TTLRDGEQSPGAS-----LTVEEKLQIAKQLERLGVDVIEAGF 47 (513)
T ss_pred CCCCcCCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 3678898887654 4557888888898899999999864
No 192
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=26.20 E-value=4.7e+02 Score=25.03 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=76.5
Q ss_pred cCCCcCCHHHHHHHHHHHHhcCCCC-CcEEEEecCCCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCC
Q 041428 56 TAKQYGVQENIGLALKEAMQTGIQR-KDLFVTSKLWCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPP 134 (322)
Q Consensus 56 TA~~Yg~e~~lG~~l~~~~~~~~~R-~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~ 134 (322)
+.-.||.++.+-++|++..+. .++ +-++|.|-+. ...--+.+..-+++.-++.+ .++++.+|.|.......
T Consensus 65 ~d~VfGg~~~L~~aI~~~~~~-~p~p~~i~V~~tc~-~~liGdDi~~v~~~~~~~~~--~~~vi~v~tpgf~g~~~---- 136 (415)
T cd01977 65 SHVVFGGEKKLKKNIIEAFKE-FPDIKRMTVYTTCT-TALIGDDIKAVAKEVMEELP--DVDIFVCNAPGFAGPSQ---- 136 (415)
T ss_pred cceeeccHHHHHHHHHHHHHh-CCCCcEEEEECCCc-hhhhcCCHHHHHHHHHHhcC--CCeEEEEeCCCcCCcch----
Confidence 334578888889999887553 233 3467777662 22222334444444333332 26799999887653200
Q ss_pred CCCccccccHHHHH-HHHHHHH--------HcCCccEEEecCCC--HHHHHHHHhhcCCCCce--------------ece
Q 041428 135 KDGEVLEFDMEGVW-REMEKLV--------KDGLVRDVGVCNFT--LKKLNKLLNFAKTKPSV--------------CQM 189 (322)
Q Consensus 135 ~~~~~~~~~~~~~~-~~L~~l~--------~~Gkir~iGvs~~~--~~~l~~~~~~~~~~~~~--------------~q~ 189 (322)
......+. ..++++. ..++|--||-.++. .+.+.++++..++++.. -..
T Consensus 137 ------~~G~~~a~~al~~~l~~~~~~~~~~~~~VNliG~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~t~~ei~~~~~A 210 (415)
T cd01977 137 ------SKGHHVLNIAWINQKVGTVEPEITSDYTINYIGDYNIQGDTEVLQKYFERMGIQVLSTFTGNGTYDDLRWMHRA 210 (415)
T ss_pred ------hHHHHHHHHHHHHHhhCcCCcCcCCCCcEEEEccCCCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccC
Confidence 00111222 2233333 24668888854443 45678888877654321 111
Q ss_pred eeCCC-CCc--HHHHHHHH-HcCceEEEeccC
Q 041428 190 EMHPG-WRN--DKILEACK-KNGIHVTAYSPL 217 (322)
Q Consensus 190 ~~~~~-~~~--~~ll~~~~-~~gi~via~~pl 217 (322)
.+|+. .+. ..+.++.+ +.|++.+...|+
T Consensus 211 ~lnlv~~~~~~~~~A~~L~er~GiP~~~~~~~ 242 (415)
T cd01977 211 KLNVVNCARSAGYIANELKKRYGIPRLDVDGF 242 (415)
T ss_pred CEEEEEchhHHHHHHHHHHHHhCCCeEEeccC
Confidence 22332 112 23444444 459998877654
No 193
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=26.06 E-value=2e+02 Score=23.77 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCCeEecCCCcC-CHHHHHHHHHHHHhcCCCCCcEEEEecC-CCCCCChHHHHHHHHHHHHHhCCC
Q 041428 38 AFKSVFTAIVEGGYRHIDTAKQYG-VQENIGLALKEAMQTGIQRKDLFVTSKL-WCADLSPDRVRSALNNTLQELQLD 113 (322)
Q Consensus 38 ~~~~~l~~Al~~Gi~~~DTA~~Yg-~e~~lG~~l~~~~~~~~~R~~~~i~tK~-~~~~~~~~~i~~~~~~SL~~Lg~d 113 (322)
...-++++|-+.||.+|=.|..|| +...+-+.+. | . =++++.|-- +...-....+...+++-|+..|.+
T Consensus 15 tle~a~erA~elgik~~vVAS~tG~tA~k~lemve-----g-~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~ 85 (186)
T COG1751 15 TLEIAVERAKELGIKHIVVASSTGYTALKALEMVE-----G-D-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAK 85 (186)
T ss_pred HHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcc-----c-C-ceEEEEEeecccccCCceecCHHHHHHHHHcCce
Confidence 344566677788999999999998 3222222222 1 1 235555543 444445567888889999999954
No 194
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=26.01 E-value=2.9e+02 Score=24.02 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=36.7
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCC--------c--HHHHHHHHHcC-ceEEEeccC
Q 041428 151 MEKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWR--------N--DKILEACKKNG-IHVTAYSPL 217 (322)
Q Consensus 151 L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~--------~--~~ll~~~~~~g-i~via~~pl 217 (322)
..++...++ .||+|+|+.+++.++.+.+ ++. +-+.++.+ . -+.+...++.. +++++.+-+
T Consensus 97 ar~~~~~~~--iIG~S~h~~eea~~A~~~g---~DY--v~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi 167 (211)
T COG0352 97 ARELLGPGL--IIGLSTHDLEEALEAEELG---ADY--VGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGI 167 (211)
T ss_pred HHHhcCCCC--EEEeecCCHHHHHHHHhcC---CCE--EEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCC
Confidence 455556665 4999999999998888764 122 22222221 1 45666666665 888886533
No 195
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=25.95 E-value=6e+02 Score=24.46 Aligned_cols=123 Identities=14% Similarity=0.201 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHcC---CccEEEecC-----CCHHHHHHHHhhcC----CCC--ceeceeeCCCCCcHHHHHHHHHcCc
Q 041428 144 MEGVWREMEKLVKDG---LVRDVGVCN-----FTLKKLNKLLNFAK----TKP--SVCQMEMHPGWRNDKILEACKKNGI 209 (322)
Q Consensus 144 ~~~~~~~L~~l~~~G---kir~iGvs~-----~~~~~l~~~~~~~~----~~~--~~~q~~~~~~~~~~~ll~~~~~~gi 209 (322)
.+.+.+.++.+.+.+ .+..|-+.. .+++++.++++... +.+ .-+.++.++..-..+.++..++.|+
T Consensus 73 ~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~ 152 (430)
T PRK08208 73 LDALIRQAEQVAEALAPARFASFAVGGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGV 152 (430)
T ss_pred HHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCC
Confidence 345555565554332 244554332 24666666665432 222 1356677776667899999999998
Q ss_pred eEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhcC--C---EEecCC--CCHHHHHHhHhc
Q 041428 210 HVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQILLKWGIHRG--T---SVIPKS--THPDRIKENIKA 274 (322)
Q Consensus 210 ~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~--~---~~i~g~--~~~~~l~~nl~a 274 (322)
.-+..+.-. +..+.++.+.+.+......-+++++.+.+ . -.|.|. .+.+.+.+.++.
T Consensus 153 ~rvslGvQS--------~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~ 216 (430)
T PRK08208 153 NRLSIGVQS--------FHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQ 216 (430)
T ss_pred CEEEEeccc--------CCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHH
Confidence 877766543 24456666655554444455666776665 1 235553 667777666543
No 196
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=25.90 E-value=3.2e+02 Score=27.28 Aligned_cols=69 Identities=9% Similarity=-0.003 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHHc-CCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEEe
Q 041428 143 DMEGVWREMEKLVKD-GLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAY 214 (322)
Q Consensus 143 ~~~~~~~~L~~l~~~-Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~ 214 (322)
..-+++++|...+.. ++|.-||+.+.. ..+..+.+..++ .+.+..|.--..-...+..+++.|+.++.-
T Consensus 82 s~~Dil~al~~a~~~~~~ia~vg~~~~~-~~~~~~~~ll~~--~i~~~~~~~~~e~~~~~~~l~~~G~~~viG 151 (526)
T TIGR02329 82 TGFDVMQALARARRIASSIGVVTHQDTP-PALRRFQAAFNL--DIVQRSYVTEEDARSCVNDLRARGIGAVVG 151 (526)
T ss_pred ChhhHHHHHHHHHhcCCcEEEEecCccc-HHHHHHHHHhCC--ceEEEEecCHHHHHHHHHHHHHCCCCEEEC
Confidence 345788888888764 677778887765 333444444333 444554433333367889999999998873
No 197
>PRK10799 metal-binding protein; Provisional
Probab=25.77 E-value=1e+02 Score=27.35 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=26.2
Q ss_pred HHHHHHcCCCeEecCCCcCCHHHHHHHHHHHHhcCCCCCcEEEEec
Q 041428 43 FTAIVEGGYRHIDTAKQYGVQENIGLALKEAMQTGIQRKDLFVTSK 88 (322)
Q Consensus 43 l~~Al~~Gi~~~DTA~~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK 88 (322)
...|.+.|++.+|. .+|.+|...-+.|.+.++...+-+-.||-++
T Consensus 200 ~~~A~~~gl~li~~-GH~~sE~~~~~~la~~L~~~~~~~~~~i~~~ 244 (247)
T PRK10799 200 IHSAREQGLHFYAA-GHHATERGGIRALSEWLNENTDLDVTFIDIP 244 (247)
T ss_pred HHHHHHCCCeEEEc-CchHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Confidence 46678888888884 5777777644445544332233344444443
No 198
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=25.73 E-value=3.1e+02 Score=21.00 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=43.8
Q ss_pred CCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCC---CccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHH
Q 041428 79 QRKDLFVTSKLWCADLSPDRVRSALNNTLQELQL---DYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLV 155 (322)
Q Consensus 79 ~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~---d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 155 (322)
+|=-+.|+-|++. ....+.++..+.+.++.+.. ...|++++-.+... ..+..++-+.|..|.
T Consensus 38 ~R~GisVsKKvgk-AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~--------------~~~~~~l~~~l~~ll 102 (114)
T PRK00499 38 FRVGISVSKKVGN-AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAA--------------ELDYKEIKKSLIHVL 102 (114)
T ss_pred cEEEEEEecccCc-hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcc--------------cCCHHHHHHHHHHHH
Confidence 4555677777755 66678888888888876643 35799888876543 245667777777766
Q ss_pred Hc
Q 041428 156 KD 157 (322)
Q Consensus 156 ~~ 157 (322)
+.
T Consensus 103 ~k 104 (114)
T PRK00499 103 KL 104 (114)
T ss_pred HH
Confidence 54
No 199
>PLN02389 biotin synthase
Probab=25.71 E-value=5.9e+02 Score=24.24 Aligned_cols=105 Identities=13% Similarity=0.051 Sum_probs=54.4
Q ss_pred CChhHHHHHHHHHHHcCCCeEecCCC-cC--CH----HHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHH
Q 041428 34 SGDEAFKSVFTAIVEGGYRHIDTAKQ-YG--VQ----ENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNT 106 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi~~~DTA~~-Yg--~e----~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~S 106 (322)
.+.+++.+..+.+.+.|++.|--... .| .+ +.+-+.++.. +...+.|....+ ..+ ...-+.
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~i-----k~~~l~i~~s~G--~l~-----~E~l~~ 183 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEI-----RGMGMEVCCTLG--MLE-----KEQAAQ 183 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHH-----hcCCcEEEECCC--CCC-----HHHHHH
Confidence 56788888888999999998743211 11 22 3455555544 222344443332 122 222233
Q ss_pred HHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCC
Q 041428 107 LQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGL 159 (322)
Q Consensus 107 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 159 (322)
|+.-|++++-. +.+.. + +.++.. ......++.++.++.+++.|.
T Consensus 184 LkeAGld~~~~----~LeTs-~-~~y~~i---~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 184 LKEAGLTAYNH----NLDTS-R-EYYPNV---ITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHcCCCEEEe----eecCC-h-HHhCCc---CCCCCHHHHHHHHHHHHHcCC
Confidence 45557665422 32211 0 000000 001357889999999999985
No 200
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=25.70 E-value=1.4e+02 Score=23.78 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEec
Q 041428 100 RSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVC 166 (322)
Q Consensus 100 ~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs 166 (322)
|..+.+.|+.+....+|.++++..++... ...+....++.|.+.-.|+-+-+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R--------------~~~d~~~~~~~l~~~~gv~l~~~~ 106 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGR--------------NYLKVGLYMEILFPKKGVRFIAIN 106 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhcc--------------CHHHHHHHHHHHHhhcCcEEEEec
Confidence 56777777778778899999998877633 456777788888877344555443
No 201
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=25.61 E-value=5.1e+02 Score=23.54 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=60.8
Q ss_pred HHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHH-----HHHHHHHHHcCCccEEEecCCCHH-------HHH
Q 041428 107 LQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGV-----WREMEKLVKDGLVRDVGVCNFTLK-------KLN 174 (322)
Q Consensus 107 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~~L~~l~~~Gkir~iGvs~~~~~-------~l~ 174 (322)
++.++-.++|+..+..+... ....+. -+.+.++.++--=|++|+.+.++. .++
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~---------------~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~e 119 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEV---------------AIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELE 119 (293)
T ss_pred HhhhcccccceEEeeccccc---------------cchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHH
Confidence 77788889999988741111 011122 256778888888899999999865 233
Q ss_pred HHHhhcCCCCceeceeeCCCCCc--------HHHHHHHHHcCceEEEeccCCC
Q 041428 175 KLLNFAKTKPSVCQMEMHPGWRN--------DKILEACKKNGIHVTAYSPLGS 219 (322)
Q Consensus 175 ~~~~~~~~~~~~~q~~~~~~~~~--------~~ll~~~~~~gi~via~~pl~~ 219 (322)
+.... ..++++.+++..+. ..+.+.|.++|+.|+.+.....
T Consensus 120 r~v~~----~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~ 168 (293)
T COG2159 120 RRVRE----LGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGP 168 (293)
T ss_pred HHHHh----cCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 33333 23444444443322 5699999999999999876643
No 202
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=25.54 E-value=4.4e+02 Score=22.72 Aligned_cols=144 Identities=15% Similarity=0.240 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 041428 97 DRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKLNKL 176 (322)
Q Consensus 97 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~ 176 (322)
...+..+-+.|.++|+++|.+- .|... ....+.++.+.+.... .+..+++......++..
T Consensus 13 ~~~k~~i~~~L~~~Gv~~iEvg---~~~~~---------------~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~ 72 (237)
T PF00682_consen 13 TEEKLEIAKALDEAGVDYIEVG---FPFAS---------------EDDFEQVRRLREALPN--ARLQALCRANEEDIERA 72 (237)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEE---HCTSS---------------HHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEc---ccccC---------------HHHHHHhhhhhhhhcc--cccceeeeehHHHHHHH
Confidence 3445556667999999988887 22221 1234555666666666 44556666776666664
Q ss_pred Hh---hcCCCCceeceeeCCCC----------------CcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHH
Q 041428 177 LN---FAKTKPSVCQMEMHPGW----------------RNDKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAK 237 (322)
Q Consensus 177 ~~---~~~~~~~~~q~~~~~~~----------------~~~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~ 237 (322)
++ ..+. +.+.+..+.-. .-.+.+.+++++|+.+ .+++-.. + ....+.+.++++
T Consensus 73 ~~~~~~~g~--~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v-~~~~~~~-~----~~~~~~~~~~~~ 144 (237)
T PF00682_consen 73 VEAAKEAGI--DIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV-AFGCEDA-S----RTDPEELLELAE 144 (237)
T ss_dssp HHHHHHTTS--SEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE-EEEETTT-G----GSSHHHHHHHHH
T ss_pred HHhhHhccC--CEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce-EeCcccc-c----cccHHHHHHHHH
Confidence 44 2233 34333332222 1156899999999999 3333322 1 222333333332
Q ss_pred hcCCCHHHHHHHHhhhcC--CEEe---cCCCCHHHHHHhHhccCCCCC
Q 041428 238 KLNKSPGQILLKWGIHRG--TSVI---PKSTHPDRIKENIKAFGWEIP 280 (322)
Q Consensus 238 ~~~~s~~qlal~~~l~~~--~~~i---~g~~~~~~l~~nl~a~~~~L~ 280 (322)
. +..-+ ...| +|.-+|.++.+.++.+...++
T Consensus 145 ~------------~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~ 180 (237)
T PF00682_consen 145 A------------LAEAGADIIYLADTVGIMTPEDVAELVRALREALP 180 (237)
T ss_dssp H------------HHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHST
T ss_pred H------------HHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhcc
Confidence 1 11113 2222 588899998888877654333
No 203
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=25.29 E-value=5e+02 Score=23.29 Aligned_cols=156 Identities=10% Similarity=0.008 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCC-HHHHHH
Q 041428 97 DRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFT-LKKLNK 175 (322)
Q Consensus 97 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~-~~~l~~ 175 (322)
+.+.+-+.+.++.++ +++..|=++.+-....|. .-+.++.+.++.+++.|+.-..=+=-++ +.....
T Consensus 37 ~~~~~f~~~ii~~l~-~~v~~vK~g~~lf~~~G~-----------~gi~~l~~~~~~~~~~g~~VilD~K~~DIpnTv~~ 104 (261)
T TIGR02127 37 AGLQAFCLRIIDATA-EYAAVVKPQVAFFERFGS-----------EGFKALEEVIAHARSLGLPVLADVKRGDIGSTASA 104 (261)
T ss_pred HHHHHHHHHHHHhcC-CcceEEecCHHHHHhcCH-----------HHHHHHHHHHHHHHHCCCeEEEEeeccChHHHHHH
Confidence 445555667778887 788888777643321100 1123444555666676753322222222 122222
Q ss_pred HHhhcCCCCceeceeeCCCCCc---HHHHHHHHHc--CceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHHHHHH
Q 041428 176 LLNFAKTKPSVCQMEMHPGWRN---DKILEACKKN--GIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQILLKW 250 (322)
Q Consensus 176 ~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~--gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~qlal~~ 250 (322)
+.+..-....+-.+..|++... ...++.+++. ++.|.+-...-+ ...++.+....|.+..+..+++
T Consensus 105 ~a~a~~~~~g~D~vTvh~~~G~d~l~~~~~~~~~~~~~v~VlvlTSnp~---------~~~lq~~~~~~~~~~~~~V~~~ 175 (261)
T TIGR02127 105 YAKAWLGHLHADALTVSPYLGLDSLRPFLEYARANGAGIFVLVKTSNPG---------GADLQDLRVSDGRTVYEEVAEL 175 (261)
T ss_pred HHHHHHhhcCCCEEEECCcCCHHHHHHHHHHHhhcCCEEEEEEeCCCCC---------HHHHhhhhccCCCCHHHHHHHH
Confidence 2222110112345555565554 4556666554 444555333311 1233333222334566555555
Q ss_pred hhhc-------C-CEEecCCCCHHHHHHhHh
Q 041428 251 GIHR-------G-TSVIPKSTHPDRIKENIK 273 (322)
Q Consensus 251 ~l~~-------~-~~~i~g~~~~~~l~~nl~ 273 (322)
+..- + ..+++|+++++++...=+
T Consensus 176 a~~~~~~~~~~g~~GvV~gAT~p~e~~~iR~ 206 (261)
T TIGR02127 176 AGELNESPGDCSSVGAVVGATSPGDLLRLRI 206 (261)
T ss_pred HHHhccccCcCCceEEEECCCCHHHHHHHHH
Confidence 4322 3 678999999887766543
No 204
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=25.02 E-value=1.4e+02 Score=20.10 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCceEEEeccCC
Q 041428 198 DKILEACKKNGIHVTAYSPLG 218 (322)
Q Consensus 198 ~~ll~~~~~~gi~via~~pl~ 218 (322)
.++++.|++.|+..++.+--.
T Consensus 18 ~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 18 EELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred HHHHHHHHHcCCCEEEEeeCC
Confidence 789999999999999876553
No 205
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=24.94 E-value=2.5e+02 Score=24.22 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=39.6
Q ss_pred HHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHhhcCCCCc
Q 041428 107 LQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVC-NFTLKKLNKLLNFAKTKPS 185 (322)
Q Consensus 107 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs-~~~~~~l~~~~~~~~~~~~ 185 (322)
+..+|.|++=+.+...-.+ ..+. +..+.+.+.. .+.+..+||. +-+++.+.++++... ++
T Consensus 19 ~~~~Gad~iGfI~~~~S~R---------------~V~~-~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~--~d 79 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPR---------------YVSP-EQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVP--LD 79 (210)
T ss_pred HHHcCCCEEEEccCCCCCC---------------cCCH-HHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcC--CC
Confidence 3468999888864222111 1232 3333333322 3568899987 557888888887644 58
Q ss_pred eeceee
Q 041428 186 VCQMEM 191 (322)
Q Consensus 186 ~~q~~~ 191 (322)
++|++-
T Consensus 80 ~vQLHg 85 (210)
T PRK01222 80 LLQLHG 85 (210)
T ss_pred EEEECC
Confidence 899864
No 206
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=24.94 E-value=4e+02 Score=22.09 Aligned_cols=84 Identities=15% Similarity=0.096 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccc
Q 041428 63 QENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEF 142 (322)
Q Consensus 63 e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~ 142 (322)
-+.+|++|++. ++..+.|.+++++ ..++..+...+.++.+..-.+ ++-.+ ..
T Consensus 34 a~~~a~~L~~~---~~~~D~VL~Spa~--------Ra~QTae~v~~~~~~~~~~~~--~~l~p---------------~~ 85 (163)
T COG2062 34 AELVAAWLAGQ---GVEPDLVLVSPAV--------RARQTAEIVAEHLGEKKVEVF--EELLP---------------NG 85 (163)
T ss_pred HHHHHHHHHhc---CCCCCEEEeChhH--------HHHHHHHHHHHhhCcccceec--cccCC---------------CC
Confidence 35689999986 6555667777666 667777777778883322221 11111 13
Q ss_pred cHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 041428 143 DMEGVWREMEKLVKDGLVRDVGVCNFTLKKLNKL 176 (322)
Q Consensus 143 ~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~ 176 (322)
+...+.+.++++.+ -+..+.+-+|.|..-+-+
T Consensus 86 d~~~~l~~l~~~~d--~v~~vllVgH~P~l~~l~ 117 (163)
T COG2062 86 DPGTVLDYLEALGD--GVGSVLLVGHNPLLEELA 117 (163)
T ss_pred CHHHHHHHHHHhcc--cCceEEEECCCccHHHHH
Confidence 45677777777776 588899999986544333
No 207
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=24.90 E-value=4.8e+02 Score=22.92 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCH------HHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEE-eccC
Q 041428 145 EGVWREMEKLVKDGLVRDVGVCNFTL------KKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTA-YSPL 217 (322)
Q Consensus 145 ~~~~~~L~~l~~~Gkir~iGvs~~~~------~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via-~~pl 217 (322)
...++.++++++.-.+.-+-.+-+++ +.+.+.+..++. +.+=++--+.....++++.|+++|+..+. .+|-
T Consensus 62 ~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~--~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~ 139 (242)
T cd04724 62 KDVLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGV--DGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPT 139 (242)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCC--cEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 46788888888876676454444464 444333333333 21111110112225788899999985443 5554
No 208
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=24.78 E-value=1.9e+02 Score=24.95 Aligned_cols=16 Identities=25% Similarity=0.410 Sum_probs=8.4
Q ss_pred HHHHHHHHHcCceEEE
Q 041428 198 DKILEACKKNGIHVTA 213 (322)
Q Consensus 198 ~~ll~~~~~~gi~via 213 (322)
.++..+|++||+.++.
T Consensus 175 ~~~~~fa~~h~l~~it 190 (203)
T COG0108 175 PELEEFAKEHGLPVIT 190 (203)
T ss_pred HHHHHHHHHcCCcEEE
Confidence 4455555555555544
No 209
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=24.77 E-value=4.5e+02 Score=22.62 Aligned_cols=168 Identities=12% Similarity=0.121 Sum_probs=87.1
Q ss_pred CChhHHHHHHHHHHHcCCCeEecC-CCcC--CHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHh
Q 041428 34 SGDEAFKSVFTAIVEGGYRHIDTA-KQYG--VQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQEL 110 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi~~~DTA-~~Yg--~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~L 110 (322)
++.++..++++...+.||..|++. +..+ ..+.+-...+.. +...+...+. .....++..++.. ...
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~-----~~~~~i~~~~~~~-~~~ 79 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREAL-----PNARLQALCR-----ANEEDIERAVEAA-KEA 79 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHH-----HSSEEEEEEE-----SCHHHHHHHHHHH-HHT
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhh-----cccccceeee-----ehHHHHHHHHHhh-Hhc
Confidence 566888899999999999999999 3333 122343333322 2233322222 3455666666543 567
Q ss_pred CCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCC---HHHHHHHHhhcC-CCCce
Q 041428 111 QLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFT---LKKLNKLLNFAK-TKPSV 186 (322)
Q Consensus 111 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~---~~~l~~~~~~~~-~~~~~ 186 (322)
|.+.+.++.-=++..... ......+...+.+.+.++..++.|....+|+...+ ++.+.++.+... ..++.
T Consensus 80 g~~~i~i~~~~s~~~~~~------~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 153 (237)
T PF00682_consen 80 GIDIIRIFISVSDLHIRK------NLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADI 153 (237)
T ss_dssp TSSEEEEEEETSHHHHHH------HTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SE
T ss_pred cCCEEEecCcccHHHHHH------hhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeE
Confidence 888777664211100000 00000001145566677788899998899986554 444444433321 12344
Q ss_pred ecee--eCCCCCc--HHHHHHHHHc----CceEEEeccCC
Q 041428 187 CQME--MHPGWRN--DKILEACKKN----GIHVTAYSPLG 218 (322)
Q Consensus 187 ~q~~--~~~~~~~--~~ll~~~~~~----gi~via~~pl~ 218 (322)
+.+. +....|. .+++...+++ .+++-++.-++
T Consensus 154 i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~G 193 (237)
T PF00682_consen 154 IYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLG 193 (237)
T ss_dssp EEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS
T ss_pred EEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCcc
Confidence 4443 2223333 5677777653 36666666664
No 210
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=24.48 E-value=5.7e+02 Score=23.68 Aligned_cols=139 Identities=16% Similarity=0.125 Sum_probs=87.9
Q ss_pred ccCChhHHHHHHHHHHHcCCCeEe----------cCCCcC-----CHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCh
Q 041428 32 WKSGDEAFKSVFTAIVEGGYRHID----------TAKQYG-----VQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSP 96 (322)
Q Consensus 32 ~~~~~~~~~~~l~~Al~~Gi~~~D----------TA~~Yg-----~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~ 96 (322)
++.+++...+.-..+.+.|+..|| +-..+| +...+.+.++...+. .+ ++-|+.|+-...-..
T Consensus 74 ~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~a-v~--~iPVTVKiRlG~d~~ 150 (323)
T COG0042 74 GGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEA-VG--DIPVTVKIRLGWDDD 150 (323)
T ss_pred cCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHh-hC--CCCeEEEEecccCcc
Confidence 335667777888888899999999 344455 366677777665322 22 678999982211111
Q ss_pred HHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCC-ccEEEecC-CCHHHHH
Q 041428 97 DRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGL-VRDVGVCN-FTLKKLN 174 (322)
Q Consensus 97 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk-ir~iGvs~-~~~~~l~ 174 (322)
+.....+.+.++.-| +|.+.+|.-.+...+. -..-|+.+.++++.=. |--||=.+ ++++...
T Consensus 151 ~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y~-------------~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~ 214 (323)
T COG0042 151 DILALEIARILEDAG---ADALTVHGRTRAQGYL-------------GPADWDYIKELKEAVPSIPVIANGDIKSLEDAK 214 (323)
T ss_pred cccHHHHHHHHHhcC---CCEEEEecccHHhcCC-------------CccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHH
Confidence 223444555555555 7899999865543321 1256777888887766 66666555 5788888
Q ss_pred HHHhhcCCCCceeceee
Q 041428 175 KLLNFAKTKPSVCQMEM 191 (322)
Q Consensus 175 ~~~~~~~~~~~~~q~~~ 191 (322)
+.++..+. +.+++.=
T Consensus 215 ~~l~~tg~--DgVMigR 229 (323)
T COG0042 215 EMLEYTGA--DGVMIGR 229 (323)
T ss_pred HHHHhhCC--CEEEEcH
Confidence 88887653 5566543
No 211
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=24.48 E-value=5.5e+02 Score=23.53 Aligned_cols=128 Identities=16% Similarity=0.101 Sum_probs=66.5
Q ss_pred CChhHHHHHHHHHHHcCCCeEecCCCcCCHHH----HHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHH
Q 041428 34 SGDEAFKSVFTAIVEGGYRHIDTAKQYGVQEN----IGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQE 109 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~----lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~ 109 (322)
.+.++..++++.+.+.|++.|.-+. | |.. +-+.++...+.. .-+++.|+|... . +. ..-+.|.+
T Consensus 43 ls~eei~~~i~~~~~~gv~~V~ltG--G-EPll~~~l~~li~~i~~~~-gi~~v~itTNG~---l----l~-~~~~~L~~ 110 (334)
T TIGR02666 43 LTFEEIERLVRAFVGLGVRKVRLTG--G-EPLLRKDLVELVARLAALP-GIEDIALTTNGL---L----LA-RHAKDLKE 110 (334)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--c-cccccCCHHHHHHHHHhcC-CCCeEEEEeCch---h----HH-HHHHHHHH
Confidence 5668888999999999998887543 3 222 223333221100 122677888652 1 11 12344666
Q ss_pred hCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCc----cEEEecCCCHHHHHHHHhhc
Q 041428 110 LQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLV----RDVGVCNFTLKKLNKLLNFA 180 (322)
Q Consensus 110 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gki----r~iGvs~~~~~~l~~~~~~~ 180 (322)
.|+++|- +-++..++..-. .... .....+.+++.++.+++.|.- ..+-+.+.+.+++.++++..
T Consensus 111 ~gl~~v~-ISld~~~~~~~~---~i~~---~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~ 178 (334)
T TIGR02666 111 AGLKRVN-VSLDSLDPERFA---KITR---RGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFA 178 (334)
T ss_pred cCCCeEE-EecccCCHHHhh---eeCC---CCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHH
Confidence 6765443 234443321100 0000 012568999999999998852 22223345555555555443
No 212
>TIGR00035 asp_race aspartate racemase.
Probab=24.36 E-value=4e+02 Score=23.06 Aligned_cols=79 Identities=13% Similarity=-0.098 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHH-HH
Q 041428 96 PDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKK-LN 174 (322)
Q Consensus 96 ~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~-l~ 174 (322)
.+.+++=++.+-.+.+.++++.+.+++|+..+.... ...+.++.....+.+.++.|.+. .+.+|-++..+... ++
T Consensus 16 ~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~---~~~~~~~~~~~~l~~~~~~L~~~-g~d~iviaCNTah~~~~ 91 (229)
T TIGR00035 16 AELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAY---ILGRGEDRPRPILIDIAVKLENA-GADFIIMPCNTAHKFAE 91 (229)
T ss_pred HHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHH---HhcCCcchHHHHHHHHHHHHHHc-CCCEEEECCccHHHHHH
Confidence 345555566666778899999999999865432100 00000112345677777777776 48999999988665 34
Q ss_pred HHHh
Q 041428 175 KLLN 178 (322)
Q Consensus 175 ~~~~ 178 (322)
++.+
T Consensus 92 ~l~~ 95 (229)
T TIGR00035 92 DIQK 95 (229)
T ss_pred HHHH
Confidence 4443
No 213
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=24.24 E-value=4.1e+02 Score=26.93 Aligned_cols=115 Identities=13% Similarity=0.108 Sum_probs=67.9
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccE
Q 041428 83 LFVTSKLWCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRD 162 (322)
Q Consensus 83 ~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~ 162 (322)
+.|+..+.............+.+.++..+.. .+-+.+.-++.... .....+.+.+..|++.|- .
T Consensus 491 ~~l~iNls~~~l~~~~f~~~l~~~l~~~~~~-~~~l~lEi~E~~~~-------------~~~~~~~~~~~~l~~~G~--~ 554 (660)
T PRK11829 491 LPLSVNISGLQVQNKQFLPHLKTLISHYHID-PQQLLLEITETAQI-------------QDLDEALRLLRELQGLGL--L 554 (660)
T ss_pred ceEEEEeCHHHHCCchHHHHHHHHHHHcCcC-hhhEEEEEcCchhh-------------cCHHHHHHHHHHHHhCCC--E
Confidence 4455555433344455667788888887754 44455554443211 245788889999999998 5
Q ss_pred EEecCCC--HHHHHHHHhhcCCCCceeceeeCCCC-----Cc--HHHHHHHHHcCceEEE
Q 041428 163 VGVCNFT--LKKLNKLLNFAKTKPSVCQMEMHPGW-----RN--DKILEACKKNGIHVTA 213 (322)
Q Consensus 163 iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~-----~~--~~ll~~~~~~gi~via 213 (322)
|++.+|. ...+..+......+++.+-+.-+... +. ..+...|+..|+.++|
T Consensus 555 ialDdfG~g~ss~~~L~~~~~l~~d~iKid~~~~~~~~~~~~~~~~i~~~a~~l~~~via 614 (660)
T PRK11829 555 IALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVMA 614 (660)
T ss_pred EEEECCCCchhhHHHHhccCCCCCcEEEECHHHHhcccCCHHHHHHHHHHHHHcCCeEEE
Confidence 7777775 23344443311244555444422211 11 4577788899999988
No 214
>PLN02540 methylenetetrahydrofolate reductase
Probab=24.19 E-value=7.6e+02 Score=25.01 Aligned_cols=117 Identities=9% Similarity=0.125 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHcCCCeEecCCCcC---CHHHHHH--HHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhC
Q 041428 37 EAFKSVFTAIVEGGYRHIDTAKQYG---VQENIGL--ALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQ 111 (322)
Q Consensus 37 ~~~~~~l~~Al~~Gi~~~DTA~~Yg---~e~~lG~--~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg 111 (322)
+...+.+++..+.|-.|+|.+..=| ++..+.- .+++. -| +-.+--+...+.+...+...+.+. +.+|
T Consensus 15 ~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~--~G-----ie~i~HLTCrd~n~~~L~~~L~~a-~~~G 86 (565)
T PLN02540 15 DNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNM--IC-----VETMMHLTCTNMPVEKIDHALETI-KSNG 86 (565)
T ss_pred HHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHh--cC-----CCeeEEeeecCCCHHHHHHHHHHH-HHCC
Confidence 3445666777788999999987766 2333322 22221 01 111122222345566666666655 7788
Q ss_pred CCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHc-CCccEEEecCCC
Q 041428 112 LDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKD-GLVRDVGVCNFT 169 (322)
Q Consensus 112 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-Gkir~iGvs~~~ 169 (322)
+. .++.|..-.+ ..+..+...+ .. ...+.+.+..+++. |....|||+.+.
T Consensus 87 Ir--NILALrGDpp-~~~d~~~~~~-g~----F~~A~dLV~~Ir~~~gd~f~IgVAGYP 137 (565)
T PLN02540 87 IQ--NILALRGDPP-HGQDKFVQVE-GG----FACALDLVKHIRSKYGDYFGITVAGYP 137 (565)
T ss_pred CC--EEEEECCCCC-CCCCCcCCCC-CC----cccHHHHHHHHHHhCCCCceEEEeCCC
Confidence 64 4566655222 1111110111 11 12344444444443 556778998774
No 215
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=24.18 E-value=5.5e+02 Score=26.20 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=41.3
Q ss_pred HHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHhhcCCCCce
Q 041428 108 QELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVC-NFTLKKLNKLLNFAKTKPSV 186 (322)
Q Consensus 108 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs-~~~~~~l~~~~~~~~~~~~~ 186 (322)
..+|.|++=+++.....+. .+.+.+...+.+......++.+||- |-+++.+.++.+... +++
T Consensus 20 ~~~gaD~iGfIf~~~SpR~---------------V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~--ld~ 82 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRF---------------VGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNG--IDF 82 (610)
T ss_pred HHcCCCEEEEEecCCCCCC---------------CCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcC--CCE
Confidence 4589998888754421111 3334413333333333357789985 777888888887644 588
Q ss_pred eceeeC
Q 041428 187 CQMEMH 192 (322)
Q Consensus 187 ~q~~~~ 192 (322)
+|+.-.
T Consensus 83 vQLHG~ 88 (610)
T PRK13803 83 VQLHGA 88 (610)
T ss_pred EEECCC
Confidence 898743
No 216
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=24.08 E-value=6.5e+02 Score=24.19 Aligned_cols=110 Identities=17% Similarity=0.123 Sum_probs=60.7
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCC
Q 041428 58 KQYGVQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDG 137 (322)
Q Consensus 58 ~~Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~ 137 (322)
-.||.++.+-++|++..+. .+.+-++|.|-+- ...--+.+..-+++. +++ .++++.+|.|.......
T Consensus 66 ~V~Gg~~kL~~~I~~~~~~-~~p~~I~V~ttC~-~~~IGdDi~~v~~~~-~~~---~~~vi~v~t~gf~g~~~------- 132 (427)
T cd01971 66 IVFGGEDRLRELIKSTLSI-IDADLFVVLTGCI-AEIIGDDVGAVVSEF-QEG---GAPIVYLETGGFKGNNY------- 132 (427)
T ss_pred eEeCCHHHHHHHHHHHHHh-CCCCEEEEEcCCc-HHHhhcCHHHHHHHh-hhc---CCCEEEEECCCcCcccc-------
Confidence 3478888888888876442 2455667777652 111122333333333 333 37889999887643210
Q ss_pred ccccccHHHHHHHHHH-HH------HcCCccEEEecC-------CCHHHHHHHHhhcCCCC
Q 041428 138 EVLEFDMEGVWREMEK-LV------KDGLVRDVGVCN-------FTLKKLNKLLNFAKTKP 184 (322)
Q Consensus 138 ~~~~~~~~~~~~~L~~-l~------~~Gkir~iGvs~-------~~~~~l~~~~~~~~~~~ 184 (322)
.-...++++|-+ +. +.+.|--||..+ -+.+.+.++++..++++
T Consensus 133 ----~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v 189 (427)
T cd01971 133 ----AGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKV 189 (427)
T ss_pred ----cHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeE
Confidence 122334444432 32 234577788642 23578888888877654
No 217
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=23.88 E-value=4.2e+02 Score=22.15 Aligned_cols=64 Identities=13% Similarity=-0.032 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCccE-EEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEE
Q 041428 147 VWREMEKLVKDGLVRD-VGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVT 212 (322)
Q Consensus 147 ~~~~L~~l~~~Gkir~-iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~vi 212 (322)
.++.++++++...+.- +++-..+.....+.+...+ .+.+|++..........++.++++|+.+.
T Consensus 44 ~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~g--adgv~vh~~~~~~~~~~~~~~~~~g~~~~ 108 (210)
T TIGR01163 44 GPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAG--ADIITVHPEASEHIHRLLQLIKDLGAKAG 108 (210)
T ss_pred CHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcC--CCEEEEccCCchhHHHHHHHHHHcCCcEE
Confidence 3445555555433222 6666666655444443333 36666655443333556677777776643
No 218
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.84 E-value=3.5e+02 Score=28.01 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHc--CCccEEEecCCCHHH
Q 041428 95 SPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKD--GLVRDVGVCNFTLKK 172 (322)
Q Consensus 95 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--Gkir~iGvs~~~~~~ 172 (322)
.-+.+++-+++....-.....-+|+|+..+.. ....+++|.+..++ +.+.+|.+++.....
T Consensus 105 gVDdIReLie~~~~~P~~gr~KViIIDEah~L-----------------s~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 105 GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-----------------TNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEEChHhc-----------------CHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 44566666655443333345567888765432 14566777777777 899999999976555
Q ss_pred HHHHHhh
Q 041428 173 LNKLLNF 179 (322)
Q Consensus 173 l~~~~~~ 179 (322)
+..+...
T Consensus 168 lpTIrSR 174 (700)
T PRK12323 168 PVTVLSR 174 (700)
T ss_pred hhHHHHH
Confidence 4444443
No 219
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=23.78 E-value=5.3e+02 Score=23.04 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHH
Q 041428 99 VRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGL-VRDVGVCNFTLKKLNKLL 177 (322)
Q Consensus 99 i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk-ir~iGvs~~~~~~l~~~~ 177 (322)
-+..+-+.|.++|++.|.+-. |... .+.++..+.+.+.++ .+-.+....+.+.++.+.
T Consensus 23 ~k~~i~~~L~~~Gv~~IEvG~---P~~~------------------~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~ 81 (262)
T cd07948 23 DKIEIAKALDAFGVDYIELTS---PAAS------------------PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAV 81 (262)
T ss_pred HHHHHHHHHHHcCCCEEEEEC---CCCC------------------HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHH
Confidence 344555669999988888763 4321 233444555544443 444556667778888888
Q ss_pred hhcCCCCceeceee--CC------CCCc--------HHHHHHHHHcCceEEEec
Q 041428 178 NFAKTKPSVCQMEM--HP------GWRN--------DKILEACKKNGIHVTAYS 215 (322)
Q Consensus 178 ~~~~~~~~~~q~~~--~~------~~~~--------~~ll~~~~~~gi~via~~ 215 (322)
+.+ . +.+.+.+ |. +... .+++++++++|+.|...-
T Consensus 82 ~~g-~--~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 82 ETG-V--DGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred HcC-c--CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 753 3 2222222 11 1111 457788999998866654
No 220
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=23.76 E-value=6.5e+02 Score=24.11 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=42.6
Q ss_pred CCccEEEecCC------CHHHHHHHHhhcCCCCcee--------------ceeeCCCCCc---HHHHHHH-HHcCceEEE
Q 041428 158 GLVRDVGVCNF------TLKKLNKLLNFAKTKPSVC--------------QMEMHPGWRN---DKILEAC-KKNGIHVTA 213 (322)
Q Consensus 158 Gkir~iGvs~~------~~~~l~~~~~~~~~~~~~~--------------q~~~~~~~~~---~~ll~~~-~~~gi~via 213 (322)
.+|--||.++. +.+.+..+++..++.+.++ +..+|+.... ..+.++. ++.|++.+.
T Consensus 163 ~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~i~~~~~A~lniv~~~~~~~~~a~~L~~~~GiP~~~ 242 (430)
T cd01981 163 PSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEGASVDDLNELPKAWFNIVPYREYGLSAALYLEEEFGMPSVK 242 (430)
T ss_pred CcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCCCCHHHHHhhhhCeEEEEecHHHHHHHHHHHHHHhCCCeEe
Confidence 45777887643 3467777778776543221 1112222111 2233333 456999988
Q ss_pred eccCCCCCCCCCCCCCHHHHHHHHhcCCC
Q 041428 214 YSPLGSQGAGRDLIHDPTVERIAKKLNKS 242 (322)
Q Consensus 214 ~~pl~~~G~l~~~~~~~~l~~la~~~~~s 242 (322)
..|++-. -..+.++++++..|+.
T Consensus 243 ~~p~G~~------~t~~~l~~i~~~~g~~ 265 (430)
T cd01981 243 ITPIGVV------ATARFLREIQELLGIQ 265 (430)
T ss_pred ccCCChH------HHHHHHHHHHHHhCCc
Confidence 7777531 1235566666666644
No 221
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=23.73 E-value=4e+02 Score=24.77 Aligned_cols=87 Identities=8% Similarity=0.009 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCccEEEecCCC--------HHHHHHHHhhcCCCCceeceeeCCCC---Cc-HHHHHHHHHcCceEEE
Q 041428 146 GVWREMEKLVKDGLVRDVGVCNFT--------LKKLNKLLNFAKTKPSVCQMEMHPGW---RN-DKILEACKKNGIHVTA 213 (322)
Q Consensus 146 ~~~~~L~~l~~~Gkir~iGvs~~~--------~~~l~~~~~~~~~~~~~~q~~~~~~~---~~-~~ll~~~~~~gi~via 213 (322)
.+.+.++.+.+-+.++.|.+++-. .+.+.++++..+.+ .+.....|... .. .+.++.+++.|+.+..
T Consensus 177 ~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~-~~~vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~~ 255 (331)
T TIGR00238 177 ELEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITDELCELLASFELQ-LMLVTHINHCNEITEEFAEAMKKLRTVNVTLLN 255 (331)
T ss_pred HHHHHHHHHHhcCCccEEEeecCCCccCchhcCHHHHHHHHhcCCc-EEEEccCCChHhCCHHHHHHHHHHHHcCCEEEe
Confidence 466667777777776666654421 12333344443332 11122223221 11 5677888999999999
Q ss_pred eccCCCCCCCCCCCCCHHHHHHHH
Q 041428 214 YSPLGSQGAGRDLIHDPTVERIAK 237 (322)
Q Consensus 214 ~~pl~~~G~l~~~~~~~~l~~la~ 237 (322)
-+++.. | ..-..+.+.++.+
T Consensus 256 qtvLl~-g---vnD~~~~l~~L~~ 275 (331)
T TIGR00238 256 QSVLLR-G---VNDRAQILAKLSI 275 (331)
T ss_pred ecceEC-C---cCCCHHHHHHHHH
Confidence 999987 6 2222344555544
No 222
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=23.68 E-value=2.4e+02 Score=23.41 Aligned_cols=36 Identities=22% Similarity=0.141 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhhcC
Q 041428 145 EGVWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAK 181 (322)
Q Consensus 145 ~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~ 181 (322)
.++.+.|+.|++.| ++-.-+||.+...+...++..+
T Consensus 95 ~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~~g 130 (198)
T TIGR01428 95 PDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKHAG 130 (198)
T ss_pred CCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHCC
Confidence 47778899999887 4556678888777777776544
No 223
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=23.66 E-value=6.8e+02 Score=24.26 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=22.9
Q ss_pred HHHHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCceecee
Q 041428 150 EMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQME 190 (322)
Q Consensus 150 ~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~ 190 (322)
.+++|++.|.+ +.++.+.+.+.+-....++|.+
T Consensus 154 ~v~~L~~~G~i--------t~~eA~~A~~~g~aD~Ivvq~E 186 (418)
T cd04742 154 ILKKLLAEGKI--------TEEQAELARRVPVADDITVEAD 186 (418)
T ss_pred HHHHHHHcCCC--------CHHHHHHHHhCCCCCEEEEccc
Confidence 37888999998 7777777766553344566743
No 224
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=23.60 E-value=4.7e+02 Score=22.41 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=22.6
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHhhcC
Q 041428 151 MEKLVKDGLVRDVGVCNFTLKKLNKLLNFAK 181 (322)
Q Consensus 151 L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~ 181 (322)
++.+++.|....+=+++|+.+.+..+.+...
T Consensus 109 ~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p 139 (226)
T cd08568 109 LEIVEKFNALDRVIFSSFNHDALRELRKLDP 139 (226)
T ss_pred HHHHHHcCCCCcEEEEECCHHHHHHHHHhCC
Confidence 3334455777788999999999888877543
No 225
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=23.50 E-value=1.8e+02 Score=27.77 Aligned_cols=88 Identities=16% Similarity=0.204 Sum_probs=46.2
Q ss_pred eeecccCChhHHHHHHHHHHHcCCCeEe-----cCCCcC-CHHHHHHHHHHHHhcCCCCCcEEEEecCC----------C
Q 041428 28 GLGTWKSGDEAFKSVFTAIVEGGYRHID-----TAKQYG-VQENIGLALKEAMQTGIQRKDLFVTSKLW----------C 91 (322)
Q Consensus 28 glG~~~~~~~~~~~~l~~Al~~Gi~~~D-----TA~~Yg-~e~~lG~~l~~~~~~~~~R~~~~i~tK~~----------~ 91 (322)
|+||-.++.++..+ +.+...+| ++.-+. ++..+.+.+++. ...=+||-||+- +
T Consensus 95 G~gt~~f~~~~Yl~------~~~~~~yD~fiii~s~rf~~ndv~La~~i~~~-----gK~fyfVRTKvD~Dl~~~~~~~p 163 (376)
T PF05049_consen 95 GIGTPNFPPEEYLK------EVKFYRYDFFIIISSERFTENDVQLAKEIQRM-----GKKFYFVRTKVDSDLYNERRRKP 163 (376)
T ss_dssp -GGGSS--HHHHHH------HTTGGG-SEEEEEESSS--HHHHHHHHHHHHT-----T-EEEEEE--HHHHHHHHHCC-S
T ss_pred CCCCCCCCHHHHHH------HccccccCEEEEEeCCCCchhhHHHHHHHHHc-----CCcEEEEEecccccHhhhhccCC
Confidence 66776665554433 23444444 233333 566678888765 355678999982 1
Q ss_pred CCCCh----HHHHHHHHHHHHHhCCCccceeEeecCCCC
Q 041428 92 ADLSP----DRVRSALNNTLQELQLDYLDLYLIHWPFRL 126 (322)
Q Consensus 92 ~~~~~----~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~ 126 (322)
..++. +.|++.+.+.|++-|+....+|++-+.+..
T Consensus 164 ~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 164 RTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLS 202 (376)
T ss_dssp TT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTT
T ss_pred cccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcc
Confidence 22332 467888888999999999999999876543
No 226
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=23.47 E-value=5.4e+02 Score=23.00 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=29.2
Q ss_pred EcCCCCccCcceeecccCChhHHHHHHHHHHHcCCCeEecC
Q 041428 17 KLLSGHTIPAVGLGTWKSGDEAFKSVFTAIVEGGYRHIDTA 57 (322)
Q Consensus 17 ~l~tg~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DTA 57 (322)
||+.|...+.+. ++.++..++.+..-+.||..|+..
T Consensus 5 TLRDG~q~~~~~-----f~~~~~~~ia~~L~~~GVd~IEvG 40 (266)
T cd07944 5 TLRDGGYVNNWD-----FGDEFVKAIYRALAAAGIDYVEIG 40 (266)
T ss_pred CcccCccccCcc-----CCHHHHHHHHHHHHHCCCCEEEee
Confidence 677888777655 455888889888889999999986
No 227
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=23.27 E-value=62 Score=25.92 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCCeEec
Q 041428 40 KSVFTAIVEGGYRHIDT 56 (322)
Q Consensus 40 ~~~l~~Al~~Gi~~~DT 56 (322)
...+...++.|||+||-
T Consensus 29 ~~~i~~QL~~GiR~lDl 45 (146)
T PF00388_consen 29 SWSIREQLESGIRYLDL 45 (146)
T ss_dssp SHHHHHHHHTT--EEEE
T ss_pred hHhHHHHHhccCceEEE
Confidence 36789999999999994
No 228
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=23.26 E-value=3.8e+02 Score=21.23 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=40.2
Q ss_pred CCCcEEEEecCCCCCCChHHHHHHHHHHHHHhC--CCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHH
Q 041428 79 QRKDLFVTSKLWCADLSPDRVRSALNNTLQELQ--LDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVK 156 (322)
Q Consensus 79 ~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 156 (322)
.|=-+.|+-|....-.....++..+.++.+... ..-.|++++-.+... +.+..++.+.|..|.+
T Consensus 46 ~RiG~~VsKK~~g~AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~--------------~~~~~~l~~~l~~ll~ 111 (130)
T PRK00396 46 PRLGLVIGKKSVKLAVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLG--------------ELENPELHQQFGKLWK 111 (130)
T ss_pred ccEEEEEecccCccHhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcc--------------cCCHHHHHHHHHHHHH
Confidence 344466666643345556778888888877654 245899998876543 2345566666666544
Q ss_pred c
Q 041428 157 D 157 (322)
Q Consensus 157 ~ 157 (322)
.
T Consensus 112 k 112 (130)
T PRK00396 112 R 112 (130)
T ss_pred H
Confidence 3
No 229
>TIGR03586 PseI pseudaminic acid synthase.
Probab=23.01 E-value=6.2e+02 Score=23.57 Aligned_cols=116 Identities=15% Similarity=0.125 Sum_probs=63.7
Q ss_pred CChhHHHHHHHHHHHcCCCeEecCCCcCCHHHHH-----------------HHHHHHHhcCCCCCcEEEEecCCCCCCCh
Q 041428 34 SGDEAFKSVFTAIVEGGYRHIDTAKQYGVQENIG-----------------LALKEAMQTGIQRKDLFVTSKLWCADLSP 96 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~lG-----------------~~l~~~~~~~~~R~~~~i~tK~~~~~~~~ 96 (322)
.+.++..++.+++-+.|+.++=|...-.+-..+- ..|+.. + .....++++|=. .+.
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~v-a--~~gkPvilstG~----~t~ 146 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYV-A--KTGKPIIMSTGI----ATL 146 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHH-H--hcCCcEEEECCC----CCH
Confidence 5667777888999999999986654322111110 111111 1 123345555443 366
Q ss_pred HHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 041428 97 DRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKL 173 (322)
Q Consensus 97 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l 173 (322)
+.+..+++...+ -|. -++.++|+...+... ...--+.++..|++.-. .-||+|.|+....
T Consensus 147 ~Ei~~Av~~i~~-~g~--~~i~LlhC~s~YP~~-------------~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~~ 206 (327)
T TIGR03586 147 EEIQEAVEACRE-AGC--KDLVLLKCTSSYPAP-------------LEDANLRTIPDLAERFN-VPVGLSDHTLGIL 206 (327)
T ss_pred HHHHHHHHHHHH-CCC--CcEEEEecCCCCCCC-------------cccCCHHHHHHHHHHhC-CCEEeeCCCCchH
Confidence 778777777643 232 479999986554220 11122344445554333 3699999986543
No 230
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=22.94 E-value=6.2e+02 Score=23.55 Aligned_cols=35 Identities=3% Similarity=-0.089 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCccEEEecCC-CHHHHHHHHhhcCC
Q 041428 148 WREMEKLVKDGLVRDVGVCNF-TLKKLNKLLNFAKT 182 (322)
Q Consensus 148 ~~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~ 182 (322)
|+....+++.=++--+++.+. +++.++++++.+..
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~ 309 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHA 309 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCC
Confidence 445555565556677787775 68889988877554
No 231
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=22.91 E-value=3.4e+02 Score=26.25 Aligned_cols=68 Identities=13% Similarity=0.237 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCccEEEecCCCHHHHHHHHhhcC------CCCceeceeeCCCCC--cHHHHHHHHHcCceEEEeccC
Q 041428 149 REMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAK------TKPSVCQMEMHPGWR--NDKILEACKKNGIHVTAYSPL 217 (322)
Q Consensus 149 ~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~------~~~~~~q~~~~~~~~--~~~ll~~~~~~gi~via~~pl 217 (322)
+....+-+.|-+..+|..+.+++++++.++..+ -++-+|-+ .++-.+ ..++++.+.++||.++..+.+
T Consensus 29 eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~sa~ 104 (418)
T cd04742 29 ELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEASAF 104 (418)
T ss_pred HHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEeccc
Confidence 345566789999999999999998877766542 12333322 222222 256899999999998876653
No 232
>PLN02363 phosphoribosylanthranilate isomerase
Probab=22.86 E-value=3.2e+02 Score=24.48 Aligned_cols=74 Identities=18% Similarity=0.255 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEec-CCCHHHH
Q 041428 95 SPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVC-NFTLKKL 173 (322)
Q Consensus 95 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs-~~~~~~l 173 (322)
+++.++... ++|.|++=+.+...-.+. .+. +..+.+.+......++.+||. +-+++.+
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~---------------Vs~-e~a~~I~~~l~~~~~~~VgVfv~~~~~~I 114 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRS---------------ISL-SVAKEISQVAREGGAKPVGVFVDDDANTI 114 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCc---------------CCH-HHHHHHHHhccccCccEEEEEeCCCHHHH
Confidence 345554443 589999888643221111 233 333333333333246679986 7778888
Q ss_pred HHHHhhcCCCCceeceee
Q 041428 174 NKLLNFAKTKPSVCQMEM 191 (322)
Q Consensus 174 ~~~~~~~~~~~~~~q~~~ 191 (322)
.++++..+ ++++|+.-
T Consensus 115 ~~~~~~~~--ld~VQLHG 130 (256)
T PLN02363 115 LRAADSSD--LELVQLHG 130 (256)
T ss_pred HHHHHhcC--CCEEEECC
Confidence 88887644 58899863
No 233
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=22.85 E-value=97 Score=17.89 Aligned_cols=17 Identities=18% Similarity=0.258 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCCeEec
Q 041428 40 KSVFTAIVEGGYRHIDT 56 (322)
Q Consensus 40 ~~~l~~Al~~Gi~~~DT 56 (322)
.+.++.++++|+..|-|
T Consensus 10 ~~~~~~~l~~GVDgI~T 26 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMT 26 (30)
T ss_dssp HHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHcCCCEeeC
Confidence 46789999999999977
No 234
>PRK08084 DNA replication initiation factor; Provisional
Probab=22.77 E-value=5.1e+02 Score=22.50 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=33.2
Q ss_pred cceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 041428 115 LDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKL 173 (322)
Q Consensus 115 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l 173 (322)
.|++.|......... ....+++++.+..+++.|+++-|+.|+..+..+
T Consensus 98 ~dlliiDdi~~~~~~-----------~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 98 LSLVCIDNIECIAGD-----------ELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred CCEEEEeChhhhcCC-----------HHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 588888665432110 012356788899999999999999999877663
No 235
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=22.76 E-value=3.6e+02 Score=25.75 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCCc--c-EEEecCCCHHHHHHHHhhcCCCCceeceeeCCCC---CcHHHHHHHHHcCceEEEe
Q 041428 146 GVWREMEKLVKDGLV--R-DVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGW---RNDKILEACKKNGIHVTAY 214 (322)
Q Consensus 146 ~~~~~L~~l~~~Gki--r-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~ll~~~~~~gi~via~ 214 (322)
+-++.+.+|++.-.+ . .-|=+.++...+..+++.... +++|....-.- .-..+..+|+.+|+.++.+
T Consensus 246 ~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~--Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 246 DDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCI--DIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred ccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCC--CEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 346667777776442 1 236666777778878776443 67777654432 2267888888888887553
No 236
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=22.51 E-value=6.5e+02 Score=23.63 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHh
Q 041428 100 RSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGL-VRDVGVCNFTLKKLNKLLN 178 (322)
Q Consensus 100 ~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk-ir~iGvs~~~~~~l~~~~~ 178 (322)
+..+-+.|.++|+++|.+- .|... +.-++.+..+.+.++ .+..+++....+.++.+.+
T Consensus 25 k~~ia~~L~~~Gv~~IEvG---~p~~~------------------~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~ 83 (365)
T TIGR02660 25 KLAIARALDEAGVDELEVG---IPAMG------------------EEERAVIRAIVALGLPARLMAWCRARDADIEAAAR 83 (365)
T ss_pred HHHHHHHHHHcCCCEEEEe---CCCCC------------------HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHc
Q ss_pred hcCCCCceeceeeCCCCCcH--------------HHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHh
Q 041428 179 FAKTKPSVCQMEMHPGWRND--------------KILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKK 238 (322)
Q Consensus 179 ~~~~~~~~~q~~~~~~~~~~--------------~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~ 238 (322)
. +.+...+-+..|..+... +.+++++++|..+....+.+. ....+.+.++++.
T Consensus 84 ~-g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~------r~~~~~l~~~~~~ 150 (365)
T TIGR02660 84 C-GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDAS------RADPDFLVELAEV 150 (365)
T ss_pred C-CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCC------CCCHHHHHHHHHH
No 237
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=22.47 E-value=6.3e+02 Score=23.44 Aligned_cols=218 Identities=13% Similarity=0.071 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHHHcCCCeEecCCCcCC---------HHHHHHHHHHHHh-cCCCCCcEE-----EEecCCC---------
Q 041428 36 DEAFKSVFTAIVEGGYRHIDTAKQYGV---------QENIGLALKEAMQ-TGIQRKDLF-----VTSKLWC--------- 91 (322)
Q Consensus 36 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg~---------e~~lG~~l~~~~~-~~~~R~~~~-----i~tK~~~--------- 91 (322)
++.+.++-+..+++|.+.+-|...+.+ ++..-+..+...+ ....|+++. |+--+++
T Consensus 52 Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~~v~gsiGp~~A~l~~g~ 131 (317)
T KOG1579|consen 52 PEAVEQVHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADLARERLGEETGYVAGSIGPYGATLADGS 131 (317)
T ss_pred hHHHHHHHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccccceeeeecccccceecCCc
Confidence 566777888899999999999776652 1111111111100 001344433 2222211
Q ss_pred -------CCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEE
Q 041428 92 -------ADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVG 164 (322)
Q Consensus 92 -------~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iG 164 (322)
...+.+.+.+-.++-|+.+.-.-||++.+...... ...+.+++.|+++. -.+=-+|+
T Consensus 132 eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETip~~---------------~EA~a~l~~l~~~~-~~~p~~is 195 (317)
T KOG1579|consen 132 EYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETIPNV---------------AEAKAALELLQELG-PSKPFWIS 195 (317)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeecCCH---------------HHHHHHHHHHHhcC-CCCcEEEE
Confidence 23456778888888888887677999998763211 11233444444431 22233566
Q ss_pred ecCCC------HHHHHHHHhhcCCC--CceeceeeCCCCCcHH-HHHHH-HHcCceEEEeccCCCCCCCCCCCCCHHHHH
Q 041428 165 VCNFT------LKKLNKLLNFAKTK--PSVCQMEMHPGWRNDK-ILEAC-KKNGIHVTAYSPLGSQGAGRDLIHDPTVER 234 (322)
Q Consensus 165 vs~~~------~~~l~~~~~~~~~~--~~~~q~~~~~~~~~~~-ll~~~-~~~gi~via~~pl~~~G~l~~~~~~~~l~~ 234 (322)
++..+ .+.+++++...... +..+=+++........ +.++. +-.++.+++|. .++ ..... ....+..
T Consensus 196 ~t~~d~g~l~~G~t~e~~~~~~~~~~~~~~IGvNC~~~~~~~~~~~~L~~~~~~~~llvYP-NsG-e~yd~--~~g~~~~ 271 (317)
T KOG1579|consen 196 FTIKDEGRLRSGETGEEAAQLLKDGINLLGIGVNCVSPNFVEPLLKELMAKLTKIPLLVYP-NSG-EVYDN--EKGGWIP 271 (317)
T ss_pred EEecCCCcccCCCcHHHHHHHhccCCceEEEEeccCCchhccHHHHHHhhccCCCeEEEec-CCC-CCCcc--ccCcccC
Confidence 66543 34556665554433 3344444433333333 22332 45588999984 433 21100 0000000
Q ss_pred HHHhcCCCHHHHHHHHhhhcCCEEecCC--CCHHHHHHhHhcc
Q 041428 235 IAKKLNKSPGQILLKWGIHRGTSVIPKS--THPDRIKENIKAF 275 (322)
Q Consensus 235 la~~~~~s~~qlal~~~l~~~~~~i~g~--~~~~~l~~nl~a~ 275 (322)
. ..+..+-+--.+...+.|+.+|=|+ ++|.|+.+..++.
T Consensus 272 ~--~~~~~~~~~~~~~~~~lGv~iIGGCCrt~P~~I~aI~e~v 312 (317)
T KOG1579|consen 272 T--PFGLEPWQTYVKKAIDLGVRIIGGCCRTTPKHIRAIAEAV 312 (317)
T ss_pred C--CcccchHHHHHHHHHhcccceeCcccCCChHHHHHHHHHh
Confidence 0 1123332333333344455555555 7888887776554
No 238
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=22.45 E-value=3.4e+02 Score=23.17 Aligned_cols=72 Identities=18% Similarity=0.352 Sum_probs=48.8
Q ss_pred CCCCceeceeeCCCCCcHHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhcC--CEE
Q 041428 181 KTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQILLKWGIHRG--TSV 258 (322)
Q Consensus 181 ~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~ 258 (322)
++.|+++=-.+-- -..+.+++.+++++.++.+.|-- .-|=.++|++|+++++ ..+
T Consensus 35 gi~Pd~iiGDfDS--i~~~~~~~~~~~~~~~~~~~~eK---------------------D~TD~e~Al~~~~~~~~~~i~ 91 (203)
T TIGR01378 35 GLTPDLIVGDFDS--IDEEELDFYKKAGVKIIVFPPEK---------------------DTTDLELALKYALERGADEIT 91 (203)
T ss_pred CCCCCEEEeCccc--CCHHHHHHHHHcCCceEEcCCCC---------------------CCCHHHHHHHHHHHCCCCEEE
Confidence 4555554443311 12577888888888888876542 2366789999999886 566
Q ss_pred ecCC--CCHHHHHHhHhcc
Q 041428 259 IPKS--THPDRIKENIKAF 275 (322)
Q Consensus 259 i~g~--~~~~~l~~nl~a~ 275 (322)
+.|+ ...+|.-.|+..+
T Consensus 92 i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 92 ILGATGGRLDHTLANLNLL 110 (203)
T ss_pred EEcCCCCcHHHHHHHHHHH
Confidence 7776 6788888888764
No 239
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=22.44 E-value=5.2e+02 Score=22.45 Aligned_cols=131 Identities=11% Similarity=-0.060 Sum_probs=63.1
Q ss_pred CccCcceeecccCChhHHHHHHHHHHHcCCCeEecCCCcC-CHHHHHHHHHHHHhcCCCCCcEE--------------EE
Q 041428 22 HTIPAVGLGTWKSGDEAFKSVFTAIVEGGYRHIDTAKQYG-VQENIGLALKEAMQTGIQRKDLF--------------VT 86 (322)
Q Consensus 22 ~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~e~~lG~~l~~~~~~~~~R~~~~--------------i~ 86 (322)
..+|.++-|+.+ +.+++ +.+++.|+..+..+...- +-..+.+..+.. ..+++. |.
T Consensus 70 ~~~pv~~~GGI~-s~~d~----~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~-----~~~~i~~~ld~k~~~~~~~~v~ 139 (243)
T cd04731 70 VFIPLTVGGGIR-SLEDA----RRLLRAGADKVSINSAAVENPELIREIAKRF-----GSQCVVVSIDAKRRGDGGYEVY 139 (243)
T ss_pred CCCCEEEeCCCC-CHHHH----HHHHHcCCceEEECchhhhChHHHHHHHHHc-----CCCCEEEEEEeeecCCCceEEE
Confidence 346666655553 23333 444557888887765533 444455554433 222333 44
Q ss_pred ecCCCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEec
Q 041428 87 SKLWCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVC 166 (322)
Q Consensus 87 tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs 166 (322)
|+.|......+. ..+-+.+..+| +|.+.+|......... .. -|+.+.++++.-.+.-|...
T Consensus 140 ~~~~~~~~~~~~--~~~~~~l~~~G---~d~i~v~~i~~~g~~~-----------g~---~~~~i~~i~~~~~~pvia~G 200 (243)
T cd04731 140 THGGRKPTGLDA--VEWAKEVEELG---AGEILLTSMDRDGTKK-----------GY---DLELIRAVSSAVNIPVIASG 200 (243)
T ss_pred EcCCceecCCCH--HHHHHHHHHCC---CCEEEEeccCCCCCCC-----------CC---CHHHHHHHHhhCCCCEEEeC
Confidence 444433222111 12223344455 6677777644321110 11 24445555555456656555
Q ss_pred CC-CHHHHHHHHhhcC
Q 041428 167 NF-TLKKLNKLLNFAK 181 (322)
Q Consensus 167 ~~-~~~~l~~~~~~~~ 181 (322)
.. +++.+.++++..+
T Consensus 201 Gi~~~~di~~~l~~~g 216 (243)
T cd04731 201 GAGKPEHFVEAFEEGG 216 (243)
T ss_pred CCCCHHHHHHHHHhCC
Confidence 44 4667777666533
No 240
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=22.43 E-value=5.3e+02 Score=22.56 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=36.0
Q ss_pred cCCccEEEecCCCHHHHHHHHhhcCCCCce-------------------eceeeCCCCCcHHHHHHHHHcCceEEEecc
Q 041428 157 DGLVRDVGVCNFTLKKLNKLLNFAKTKPSV-------------------CQMEMHPGWRNDKILEACKKNGIHVTAYSP 216 (322)
Q Consensus 157 ~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~-------------------~q~~~~~~~~~~~ll~~~~~~gi~via~~p 216 (322)
.+..+.+=|++|++..+..+.+....-+.. ..+..+...-...+++.++++|+.|.+|..
T Consensus 139 ~~~~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~WTv 217 (249)
T PRK09454 139 AGAAVPPLLSSFSEDALEAARQAAPELPRGLLLDEWPDDWLELTRRLGCVSLHLNHKLLDEARVAALKAAGLRILVYTV 217 (249)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccccHHHHHHhcCCeEEecccccCCHHHHHHHHHCCCEEEEEeC
Confidence 344456889999999888887754311100 011111111236788888888888888864
No 241
>PRK06256 biotin synthase; Validated
Probab=22.42 E-value=6.1e+02 Score=23.27 Aligned_cols=122 Identities=10% Similarity=0.024 Sum_probs=63.3
Q ss_pred ccHHHHHHHHHHHHHcCCccEEEe-cCC--CH---HHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEEec
Q 041428 142 FDMEGVWREMEKLVKDGLVRDVGV-CNF--TL---KKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYS 215 (322)
Q Consensus 142 ~~~~~~~~~L~~l~~~Gkir~iGv-s~~--~~---~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~ 215 (322)
.+.+++.+...++++.|..+..=+ +.+ +. +.+.++++.....+. +.+..+......+.+...++.|+..+..+
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~-i~~~~~~g~l~~e~l~~LkeaG~~~v~~~ 169 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETD-LEICACLGLLTEEQAERLKEAGVDRYNHN 169 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCC-CcEEecCCcCCHHHHHHHHHhCCCEEecC
Confidence 567999999999999986443311 233 22 234444443222122 12333333355788899999998876543
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhcC----CEEecCC-CCHHHHHHhHh
Q 041428 216 PLGSQGAGRDLIHDPTVERIAKKLNKSPGQILLKWGIHRG----TSVIPKS-THPDRIKENIK 273 (322)
Q Consensus 216 pl~~~G~l~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~----~~~i~g~-~~~~~l~~nl~ 273 (322)
. +- ..+.+..++..+...-.--+++.+...| ...|+|. .+.+++.+.+.
T Consensus 170 l--------Et-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~ 223 (336)
T PRK06256 170 L--------ET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAF 223 (336)
T ss_pred C--------cc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHH
Confidence 1 12 2344445543331111112444555544 3456665 45555555443
No 242
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=22.25 E-value=6.2e+02 Score=24.23 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=52.8
Q ss_pred ccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhhcC-CCCceeceeeC
Q 041428 114 YLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAK-TKPSVCQMEMH 192 (322)
Q Consensus 114 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~-~~~~~~q~~~~ 192 (322)
.+|++.||.-+.. +.++..++.++..+.-.+ -+=+.+.+++.+.++++.+. -+|-..-..
T Consensus 69 ~~D~Ialr~~S~D----------------Pae~fa~~vk~V~~a~~~-PLIL~~~D~evl~aale~~~~~kpLL~aAt-- 129 (386)
T PF03599_consen 69 GADMIALRLESGD----------------PAEEFAKAVKKVAEAVDV-PLILCGCDPEVLKAALEACAGKKPLLYAAT-- 129 (386)
T ss_dssp E-SEEEEE-GGGS----------------THHHHHHHHHHHHHC-SS-EEEEESSHHHHHHHHHHHTTTS--EEEEEB--
T ss_pred cccEEEEEecCCC----------------hHHHHHHHHHHHHHhcCC-CEEEEeCCHHHHHHHHHHhCcCCcEEeEcC--
Confidence 6889999874332 136666777777665443 44455569999999999876 333322221
Q ss_pred CCCCc-HHHHHHHHHcCceEEEeccCC
Q 041428 193 PGWRN-DKILEACKKNGIHVTAYSPLG 218 (322)
Q Consensus 193 ~~~~~-~~ll~~~~~~gi~via~~pl~ 218 (322)
..+ +++.+.|+++|..+++.+|..
T Consensus 130 --~eNyk~m~~lA~~y~~pl~v~sp~D 154 (386)
T PF03599_consen 130 --EENYKAMAALAKEYGHPLIVSSPID 154 (386)
T ss_dssp --TTTHHHHHHHHHHCT-EEEEE-SSC
T ss_pred --HHHHHHHHHHHHHcCCeEEEEeccc
Confidence 123 789999999999999999874
No 243
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.14 E-value=7.3e+02 Score=24.08 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=19.9
Q ss_pred cccccHHHHHHHHHHHHHcCCccEEEe
Q 041428 139 VLEFDMEGVWREMEKLVKDGLVRDVGV 165 (322)
Q Consensus 139 ~~~~~~~~~~~~L~~l~~~Gkir~iGv 165 (322)
.-..+.+++++.++.|++.| ++.|-+
T Consensus 175 ~rsr~~e~Vv~Ei~~l~~~G-~~ei~l 200 (445)
T PRK14340 175 ERSHPFASVLDEVRALAEAG-YREITL 200 (445)
T ss_pred CcCCCHHHHHHHHHHHHHCC-CeEEEE
Confidence 34567899999999999987 555544
No 244
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=22.12 E-value=1.9e+02 Score=22.35 Aligned_cols=53 Identities=25% Similarity=0.297 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEec
Q 041428 99 VRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVC 166 (322)
Q Consensus 99 i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs 166 (322)
-+..+.+.|+.+....+|.+++..+++... ...+....++.|...| |+-+-++
T Consensus 50 ~R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R--------------~~~~~~~~~~~l~~~g-i~l~~~~ 102 (137)
T cd00338 50 DRPGLQRLLADVKAGKIDVVLVEKLDRLSR--------------NLVDLLELLELLEAHG-VRVVTAD 102 (137)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEecchhhC--------------CHHHHHHHHHHHHHCC-CEEEEec
Confidence 466777778878778899999999888633 4557788888888765 5555554
No 245
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=22.04 E-value=4.3e+02 Score=25.47 Aligned_cols=70 Identities=11% Similarity=0.049 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHc------CCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCC---CcHHHHHHHHHcCceEEEecc
Q 041428 146 GVWREMEKLVKD------GLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGW---RNDKILEACKKNGIHVTAYSP 216 (322)
Q Consensus 146 ~~~~~L~~l~~~------Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~ll~~~~~~gi~via~~p 216 (322)
+.++.+.+|++. ..=-..+=|.++.+.+.++++.... +++|+..+-.- ...++..+|+.+||.++..+.
T Consensus 279 ~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~--d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~ 356 (408)
T TIGR01502 279 AQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAG--HMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGT 356 (408)
T ss_pred hhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCC--CEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCC
Confidence 446667777655 2222335556678888888776544 67777665432 237799999999999998766
Q ss_pred C
Q 041428 217 L 217 (322)
Q Consensus 217 l 217 (322)
.
T Consensus 357 ~ 357 (408)
T TIGR01502 357 C 357 (408)
T ss_pred C
Confidence 5
No 246
>PRK09776 putative diguanylate cyclase; Provisional
Probab=21.99 E-value=1.5e+02 Score=32.14 Aligned_cols=134 Identities=17% Similarity=0.070 Sum_probs=76.1
Q ss_pred cEEEEecCCCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCcc
Q 041428 82 DLFVTSKLWCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVR 161 (322)
Q Consensus 82 ~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir 161 (322)
.+.++..+.........+...+.+.|++.+.. .+-+.+--.+... ......+.+.++.|++.|-
T Consensus 925 ~~~~~iNis~~~l~~~~~~~~~~~~l~~~~~~-~~~l~~Ei~e~~~-------------~~~~~~~~~~~~~l~~~G~-- 988 (1092)
T PRK09776 925 GLSIALPLSVAGLSSPTLLPFLLEQLENSPLP-PRLLHLEITETAL-------------LNHAESASRLVQKLRLAGC-- 988 (1092)
T ss_pred CcEEEEEcCHHHhCCchHHHHHHHHHHhcCCC-HHHeEEEEecHHh-------------hcCHHHHHHHHHHHHHCCc--
Confidence 34455565544555556777777888777754 3344443332210 1235678889999999997
Q ss_pred EEEecCCCH--HHHHHHHhhcCCCCceeceeeCC--------CCCc--HHHHHHHHHcCceEEEeccCCCCCCCCCCCCC
Q 041428 162 DVGVCNFTL--KKLNKLLNFAKTKPSVCQMEMHP--------GWRN--DKILEACKKNGIHVTAYSPLGSQGAGRDLIHD 229 (322)
Q Consensus 162 ~iGvs~~~~--~~l~~~~~~~~~~~~~~q~~~~~--------~~~~--~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~ 229 (322)
.+.+.+|.. ..+..+.+ .+++.+-+.-+. ..+. ..++..|++.|+.+++= | .+.
T Consensus 989 ~~~lddfg~g~~~~~~l~~---~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iae------g-----VEt 1054 (1092)
T PRK09776 989 RVVLSDFGRGLSSFNYLKA---FMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLGMKTIAG------P-----VEL 1054 (1092)
T ss_pred EEEEcCCCCCchHHHHHHh---CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCcEEec------c-----cCC
Confidence 466666642 23333333 233443333222 1122 56889999999999982 3 233
Q ss_pred HHHHHHHHhcCCCHHH
Q 041428 230 PTVERIAKKLNKSPGQ 245 (322)
Q Consensus 230 ~~l~~la~~~~~s~~q 245 (322)
+.-...+.+.|+...|
T Consensus 1055 ~~~~~~l~~~g~~~~Q 1070 (1092)
T PRK09776 1055 PLVLDTLSGIGVDLAY 1070 (1092)
T ss_pred HHHHHHHHHcCCCEEe
Confidence 4444555566654444
No 247
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=21.97 E-value=4.3e+02 Score=21.40 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=43.4
Q ss_pred CCCcEEEEecCCCCCCChHHHHHHHHHHHHHhC--CCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHH
Q 041428 79 QRKDLFVTSKLWCADLSPDRVRSALNNTLQELQ--LDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVK 156 (322)
Q Consensus 79 ~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 156 (322)
.|=-+.|+-|++..-.....++..+.++++.+. ....|++++-.+... ..+..++.+.|..|.+
T Consensus 48 ~RlG~sVSKKvg~~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~--------------~~~~~~l~~~l~~LL~ 113 (145)
T PRK04820 48 PRLGLAVSRKVDTRAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAA--------------KASNPQLRDAFLRLLR 113 (145)
T ss_pred cEEEEEEeccccCcchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcc--------------cCCHHHHHHHHHHHHH
Confidence 455567777775555667788888888887653 234488888665432 2456788888888776
Q ss_pred c
Q 041428 157 D 157 (322)
Q Consensus 157 ~ 157 (322)
.
T Consensus 114 k 114 (145)
T PRK04820 114 R 114 (145)
T ss_pred H
Confidence 5
No 248
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=21.89 E-value=4.7e+02 Score=21.72 Aligned_cols=114 Identities=14% Similarity=0.077 Sum_probs=60.9
Q ss_pred CcceeecccCChhHHHHHHHHHHHcCCCeEecCCCcC--------CHHHHHHHHHHHHhc----CC---CCCcEEEEecC
Q 041428 25 PAVGLGTWKSGDEAFKSVFTAIVEGGYRHIDTAKQYG--------VQENIGLALKEAMQT----GI---QRKDLFVTSKL 89 (322)
Q Consensus 25 s~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg--------~e~~lG~~l~~~~~~----~~---~R~~~~i~tK~ 89 (322)
|-+..|.-..+++....+++.+-+.-+..+-||+.++ +|-+.-.++.....+ |+ .--+++|.+=.
T Consensus 38 PLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~dg~g~yDlviflG~ 117 (170)
T COG1880 38 PLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGFDGNGNYDLVIFLGS 117 (170)
T ss_pred ceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCcCCCCCcceEEEEec
Confidence 4556677656544444444444444599999999997 222222344443332 11 12245554432
Q ss_pred CCCCCChHHHHHHHHHHHHHh---CCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHH
Q 041428 90 WCADLSPDRVRSALNNTLQEL---QLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVK 156 (322)
Q Consensus 90 ~~~~~~~~~i~~~~~~SL~~L---g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 156 (322)
..+...++-.+|+.. .+=.||=++.-+.+.+.+ ....++-++.|++|.+
T Consensus 118 ------~~yy~sq~Ls~lKhFs~i~tiaId~~Y~pnAd~SFp------------Nl~kde~~~~L~ell~ 169 (170)
T COG1880 118 ------IYYYLSQVLSGLKHFSNIKTIAIDRYYQPNADYSFP------------NLSKDEYLAYLDELLD 169 (170)
T ss_pred ------cHHHHHHHHHHhhhhhcceEEEeccccCcCccccCC------------CcCHHHHHHHHHHHhc
Confidence 234455555555544 344555555544443322 3456778888888865
No 249
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=21.87 E-value=1.4e+02 Score=25.93 Aligned_cols=39 Identities=10% Similarity=0.002 Sum_probs=24.5
Q ss_pred CCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCC
Q 041428 112 LDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFT 169 (322)
Q Consensus 112 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~ 169 (322)
.-.+|++|||.... .+..+.|.+...-.-++++.++.-.
T Consensus 73 ~~~ld~VQlHG~e~-------------------~~~~~~l~~~~~~~v~kai~v~~~~ 111 (208)
T COG0135 73 ELGLDAVQLHGDED-------------------PEYIDQLKEELGVPVIKAISVSEEG 111 (208)
T ss_pred hcCCCEEEECCCCC-------------------HHHHHHHHhhcCCceEEEEEeCCcc
Confidence 34589999998643 2443444433344578899988653
No 250
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=21.81 E-value=7.2e+02 Score=23.89 Aligned_cols=109 Identities=9% Similarity=0.008 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCC--ccceeEeecCCCCCCCCCCCCCCC
Q 041428 60 YGVQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQLD--YLDLYLIHWPFRLKEGASRPPKDG 137 (322)
Q Consensus 60 Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d--~iDl~~lH~p~~~~~~~~~~~~~~ 137 (322)
||.++.+-+++++.++...+.+=++|.|-+ .++-|=..++...+++.-+ -+.++.+|.|..... .
T Consensus 78 ~Gg~~~L~~ai~ei~~~~~~P~~I~V~tTC-----~~e~IGDDi~~v~~e~~~~~~~~pvv~v~t~Gf~g~--~------ 144 (427)
T PRK02842 78 ADANEELDRVVEELIKRRPNISVLFLVGSC-----PSEVIKLDLEGLAERLSTEFAGVPVLNYSGSGLETT--F------ 144 (427)
T ss_pred CCcHHHHHHHHHHHHhccCCCCEEEEECCC-----hHHhhcCCHHHHHHHhhcccCCCeEEEeeCCCcccc--H------
Confidence 678888888988854432234556777766 2334444444444445433 367888888765321 0
Q ss_pred ccccccHHHHHHHHHHHH-----HcCCccEEEecCCC-HHHHHHHHhhcCCCC
Q 041428 138 EVLEFDMEGVWREMEKLV-----KDGLVRDVGVCNFT-LKKLNKLLNFAKTKP 184 (322)
Q Consensus 138 ~~~~~~~~~~~~~L~~l~-----~~Gkir~iGvs~~~-~~~l~~~~~~~~~~~ 184 (322)
......++++|.+.. ..+.|--+|..+-. .+.+.++++..++.+
T Consensus 145 ---~~G~~~~~~alv~~~~~~~~~~~~VniiG~~~~~d~~el~~lL~~~Gi~v 194 (427)
T PRK02842 145 ---TQGEDAVLAALVPFCPEAPADHPSLVLVGSLADVVEDQLTLEFKKLGIGV 194 (427)
T ss_pred ---HHHHHHHHHHHhhhcccccCCCCcEEEEEeCCcchHHHHHHHHHHcCCee
Confidence 011233344333332 24567678865432 366788888776543
No 251
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=21.77 E-value=7.4e+02 Score=24.00 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=57.4
Q ss_pred CCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHH
Q 041428 92 ADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLK 171 (322)
Q Consensus 92 ~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~ 171 (322)
.+.+++.+.+.+++-.+ +-+|++-+|.- -..+.++.+++.|+ -.||-+-...
T Consensus 138 ~~mt~d~~~~~ie~qa~----~GVDfmTiHcG----------------------i~~~~~~~~~~~~R--~~giVSRGGs 189 (431)
T PRK13352 138 VDMTEDDLFDVIEKQAK----DGVDFMTIHCG----------------------VTRETLERLKKSGR--IMGIVSRGGS 189 (431)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEccc----------------------hhHHHHHHHHhcCC--ccCeecCCHH
Confidence 35677777777766554 67899999972 34556888898885 4788777765
Q ss_pred HHHHHHhhcCCCCceeceeeCCCCCc-HHHHHHHHHcCceEE
Q 041428 172 KLNKLLNFAKTKPSVCQMEMHPGWRN-DKILEACKKNGIHVT 212 (322)
Q Consensus 172 ~l~~~~~~~~~~~~~~q~~~~~~~~~-~~ll~~~~~~gi~vi 212 (322)
-+...+.... .-||+... .++++.|+++++.+-
T Consensus 190 ~~~~WM~~n~--------~ENPlye~fD~lLeI~~~yDVtlS 223 (431)
T PRK13352 190 FLAAWMLHNN--------KENPLYEHFDYLLEILKEYDVTLS 223 (431)
T ss_pred HHHHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeee
Confidence 5544443321 23444444 779999999999883
No 252
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=21.75 E-value=4.5e+02 Score=21.46 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHcCCCeEecCCCcC---C--HHHHHHHHHHHHhcCCCCCcEEEEecCCCCC-CChHHHHHHHHHHHHH
Q 041428 36 DEAFKSVFTAIVEGGYRHIDTAKQYG---V--QENIGLALKEAMQTGIQRKDLFVTSKLWCAD-LSPDRVRSALNNTLQE 109 (322)
Q Consensus 36 ~~~~~~~l~~Al~~Gi~~~DTA~~Yg---~--e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~-~~~~~i~~~~~~SL~~ 109 (322)
.++..+..+.|.+.|...+.....|+ + ++.+-+.++...+. . +.++.+.-+..+.. .+++.+.+..+.+ +.
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~-~-~~~~pv~iy~~p~~~~~~~~~~~~~~~~-~~ 140 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA-A-DGGLPLKVILETRGLKTADEIAKAARIA-AE 140 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH-h-cCCceEEEEEECCCCCCHHHHHHHHHHH-HH
Confidence 56778899999999999999765553 3 45566666554322 1 12344444432222 2555555443333 56
Q ss_pred hCCCccc
Q 041428 110 LQLDYLD 116 (322)
Q Consensus 110 Lg~d~iD 116 (322)
.|.+.|.
T Consensus 141 ~g~~~iK 147 (201)
T cd00945 141 AGADFIK 147 (201)
T ss_pred hCCCEEE
Confidence 6755443
No 253
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=21.74 E-value=5.7e+02 Score=22.72 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=53.6
Q ss_pred CccceeEeecCCCCCCCCCCCCCCCccc----------cccHHHHHHHHHHHHHcC-CccEEEecCCCH------HHHHH
Q 041428 113 DYLDLYLIHWPFRLKEGASRPPKDGEVL----------EFDMEGVWREMEKLVKDG-LVRDVGVCNFTL------KKLNK 175 (322)
Q Consensus 113 d~iDl~~lH~p~~~~~~~~~~~~~~~~~----------~~~~~~~~~~L~~l~~~G-kir~iGvs~~~~------~~l~~ 175 (322)
..+|++-|--|..+ +..|+.+. -...+.+++.+++++++. .+.-+.++-+++ +.+.+
T Consensus 36 ~Gad~iElGiPfsD------P~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~ 109 (256)
T TIGR00262 36 AGADALELGVPFSD------PLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYA 109 (256)
T ss_pred cCCCEEEECCCCCC------CCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHH
Confidence 35788888776543 12222211 133567888899998762 444455555554 44433
Q ss_pred HHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEE-EeccC
Q 041428 176 LLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVT-AYSPL 217 (322)
Q Consensus 176 ~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~vi-a~~pl 217 (322)
.+..+++ +.+=++.-+.....++++.|+++|+..+ ..+|-
T Consensus 110 ~~~~aGv--dgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~ 150 (256)
T TIGR00262 110 KCKEVGV--DGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPN 150 (256)
T ss_pred HHHHcCC--CEEEECCCChHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3333333 3333333333333678999999998844 55554
No 254
>KOG0693 consensus Myo-inositol-1-phosphate synthase [Lipid transport and metabolism]
Probab=21.70 E-value=5.2e+02 Score=24.54 Aligned_cols=84 Identities=11% Similarity=0.212 Sum_probs=44.5
Q ss_pred cceeecccCChhHHHHHHHHHHHcCCCeEecCCCcCCHHHHHHHHHHHHhcCCCCCcEE----EEecCCC---------C
Q 041428 26 AVGLGTWKSGDEAFKSVFTAIVEGGYRHIDTAKQYGVQENIGLALKEAMQTGIQRKDLF----VTSKLWC---------A 92 (322)
Q Consensus 26 ~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~e~~lG~~l~~~~~~~~~R~~~~----i~tK~~~---------~ 92 (322)
-+.+++|..+.-...+++.+| ..+|- -+-+-|+..++.=.++..+| |+..-+. .
T Consensus 136 d~v~~GWDIs~~nL~eAM~Ra-----kVld~--------~LQ~ql~p~me~~~PlPsIy~PdFIAaNQ~~RAnnvI~g~~ 202 (512)
T KOG0693|consen 136 DLVFSGWDISDMNLAEAMARA-----KVLDI--------DLQKQLRPFMENLVPLPSIYDPDFIAANQGSRANNVIKGTK 202 (512)
T ss_pred ceEEccccCCCCcHHHHHhhh-----hccCH--------HHHHHHHHHHhhccCCCcccCcchhhcCccccccccccCch
Confidence 356777877666666777666 33331 14444554444334565554 3333211 0
Q ss_pred CCChHHHHHHHHHHHHHhCCCccceeEeec
Q 041428 93 DLSPDRVRSALNNTLQELQLDYLDLYLIHW 122 (322)
Q Consensus 93 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~ 122 (322)
....++|++.+++--++-++|++=+++--+
T Consensus 203 keqle~Ir~Dir~Fke~~~ldkViVLWTAN 232 (512)
T KOG0693|consen 203 KEQLEQIRKDIREFKEENKLDKVIVLWTAN 232 (512)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 112356777777777776766555544433
No 255
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=21.62 E-value=30 Score=24.09 Aligned_cols=40 Identities=18% Similarity=0.127 Sum_probs=33.7
Q ss_pred CChhHHHHHHHHHHHcCCCeEecCCCcC-CHHHHHHHHHHH
Q 041428 34 SGDEAFKSVFTAIVEGGYRHIDTAKQYG-VQENIGLALKEA 73 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~e~~lG~~l~~~ 73 (322)
.+.+.-.++|..++..|.+.-+.|..|| +...|..|++..
T Consensus 7 ys~e~K~~~v~~~~~~g~sv~~va~~~gi~~~~l~~W~~~~ 47 (76)
T PF01527_consen 7 YSPEFKLQAVREYLESGESVSEVAREYGISPSTLYNWRKQY 47 (76)
T ss_dssp --HHHHHHHHHHHHHHHCHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCceEeeecccccccccccHHHHHH
Confidence 3566777899999999999999999999 899999999987
No 256
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.60 E-value=7.2e+02 Score=23.83 Aligned_cols=125 Identities=16% Similarity=0.209 Sum_probs=61.6
Q ss_pred ccccHHHHHHHHHHHHHcCCccEEEec--CCC--------HHHHHHHHhhcCCCCceeceeeCCCCC---cHHHHHHHHH
Q 041428 140 LEFDMEGVWREMEKLVKDGLVRDVGVC--NFT--------LKKLNKLLNFAKTKPSVCQMEMHPGWR---NDKILEACKK 206 (322)
Q Consensus 140 ~~~~~~~~~~~L~~l~~~Gkir~iGvs--~~~--------~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~ll~~~~~ 206 (322)
-..+++++.+.++.|++.| ++.|-+. |+. ...+.++++....-+....+.+...++ ..++++..++
T Consensus 151 rsrs~e~Iv~Ei~~l~~~G-~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~~ell~~l~~ 229 (418)
T PRK14336 151 KSRSIAEIGCEVAELVRRG-SREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPKDISQKLIDAMAH 229 (418)
T ss_pred ccCCHHHHHHHHHHHHHCC-CeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChhhcCHHHHHHHHh
Confidence 3467899999999999987 4555443 111 123444443221111122344443333 3678888777
Q ss_pred cC--ceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhc--C----CEEecCC--CCHHHHHHhHh
Q 041428 207 NG--IHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQILLKWGIHR--G----TSVIPKS--THPDRIKENIK 273 (322)
Q Consensus 207 ~g--i~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~qlal~~~l~~--~----~~~i~g~--~~~~~l~~nl~ 273 (322)
.+ +..+ +-|+-+ | .++.++..-+.+......-++..+... + ...|+|. .+.++.++.++
T Consensus 230 ~~~~~~~l-~lglQS-g------sd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~tl~ 298 (418)
T PRK14336 230 LPKVCRSL-SLPVQA-G------DDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQSYK 298 (418)
T ss_pred cCccCCce-ecCCCc-C------CHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHHHH
Confidence 53 2222 222322 2 345555554444333333344444443 3 2346663 55666655544
No 257
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=21.57 E-value=61 Score=28.79 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=16.6
Q ss_pred CChhHHHHHHHHHHHcCC
Q 041428 34 SGDEAFKSVFTAIVEGGY 51 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi 51 (322)
++.|++.+++..|+.+||
T Consensus 183 lt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 183 LTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred cCHHHHHHHHHHHHHhhh
Confidence 678999999999999997
No 258
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=21.54 E-value=6.4e+02 Score=23.78 Aligned_cols=88 Identities=18% Similarity=0.293 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 041428 94 LSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKL 173 (322)
Q Consensus 94 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l 173 (322)
.+++.++.-+++.|.+.|+..-| -+.+-+.|. ..- ..|+.+|...++
T Consensus 6 ~~~e~L~~~~~~vl~~~G~~ee~---------------------------A~~vA~~lv---~ad---~~G~~SHGv~r~ 52 (349)
T COG2055 6 VSAEELKALIEEVLRKAGVPEED---------------------------ARAVADVLV---AAD---LRGVDSHGVGRL 52 (349)
T ss_pred ecHHHHHHHHHHHHHHcCCCHHH---------------------------HHHHHHHHH---HHH---hcCCcccchHHH
Confidence 46788999999999999874111 122222222 221 257888877666
Q ss_pred HHHHh---hcCCCC-----------ceeceeeCCCCCc-------HHHHHHHHHcCceEEEe
Q 041428 174 NKLLN---FAKTKP-----------SVCQMEMHPGWRN-------DKILEACKKNGIHVTAY 214 (322)
Q Consensus 174 ~~~~~---~~~~~~-----------~~~q~~~~~~~~~-------~~ll~~~~~~gi~via~ 214 (322)
..+++ .+.+.+ .+.++.-+-...+ ..+++.|+++||++++-
T Consensus 53 p~yi~~l~~G~i~~~a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~vav 114 (349)
T COG2055 53 PGYVRRLKAGKINPDAEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVAV 114 (349)
T ss_pred HHHHHHHHcCCcCCCCceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEEE
Confidence 55544 344332 2233322211111 57999999999999884
No 259
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=21.51 E-value=1.3e+02 Score=21.92 Aligned_cols=71 Identities=21% Similarity=0.192 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 041428 98 RVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTLKKLNKLL 177 (322)
Q Consensus 98 ~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~ 177 (322)
.+-..-+.-...||....|+..+..-.+. ...+.+++.|...++.- | ...+...+..++
T Consensus 11 ~LG~~W~~Lar~Lgls~~~I~~i~~~~p~---------------~l~eQv~~mL~~W~~r~-----G-~~ATv~~L~~aL 69 (83)
T cd08319 11 RLGPEWEQVLLDLGLSQTDIYRCKENHPH---------------NVQSQIVEALVKWRQRF-----G-KKATVQSLIQSL 69 (83)
T ss_pred HHhhhHHHHHHHcCCCHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHHhc-----C-CCCcHHHHHHHH
Confidence 34445566778899988888877553221 12468888999999762 3 355678888888
Q ss_pred hhcCCCCceece
Q 041428 178 NFAKTKPSVCQM 189 (322)
Q Consensus 178 ~~~~~~~~~~q~ 189 (322)
..+++.+++.++
T Consensus 70 ~~~~~~~~~~~~ 81 (83)
T cd08319 70 KAVEVDPSVLQF 81 (83)
T ss_pred HHcCCCHHHHHh
Confidence 888877766543
No 260
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.50 E-value=3.2e+02 Score=23.92 Aligned_cols=45 Identities=13% Similarity=0.253 Sum_probs=33.1
Q ss_pred EEEecCC-CHHHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEE
Q 041428 162 DVGVCNF-TLKKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTA 213 (322)
Q Consensus 162 ~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via 213 (322)
.||+.+. +.++++.+++.+. ++-.+|. -+.+++++|+++|+.++.
T Consensus 72 ~vGaGTVl~~e~a~~a~~aGA------~FiVsP~-~~~~v~~~~~~~~i~~iP 117 (222)
T PRK07114 72 ILGVGSIVDAATAALYIQLGA------NFIVTPL-FNPDIAKVCNRRKVPYSP 117 (222)
T ss_pred EEeeEeCcCHHHHHHHHHcCC------CEEECCC-CCHHHHHHHHHcCCCEeC
Confidence 5898877 6888888887654 2333332 347899999999998875
No 261
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=21.36 E-value=3.8e+02 Score=24.16 Aligned_cols=62 Identities=8% Similarity=0.049 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCc--HHHHHHHHHc--CceEEEe
Q 041428 148 WREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRN--DKILEACKKN--GIHVTAY 214 (322)
Q Consensus 148 ~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~--gi~via~ 214 (322)
.++++++++...-+.||++.++.+++.++.+.+ .+.+++. .+.+. .++++.+++. .+.+++.
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~g---aD~I~ld--~~~p~~l~~~~~~~~~~~~~i~i~As 236 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEAG---ADILQLD--KFSPEELAELVPKLRSLAPPVLLAAA 236 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcC---CCEEEEC--CCCHHHHHHHHHHHhccCCCceEEEE
Confidence 445555554433246999999999988887543 2556653 23333 4566666654 4666663
No 262
>PF11181 YflT: Heat induced stress protein YflT
Probab=21.34 E-value=1.6e+02 Score=22.17 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=24.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcEEEEecC
Q 041428 60 YGVQENIGLALKEAMQTGIQRKDLFVTSKL 89 (322)
Q Consensus 60 Yg~e~~lG~~l~~~~~~~~~R~~~~i~tK~ 89 (322)
|-++.-+-.++.++...|...++++|.||-
T Consensus 6 ~~~~~E~~~~I~~L~~~Gy~~ddI~Vva~d 35 (103)
T PF11181_consen 6 YDNEEEALSAIEELKAQGYSEDDIYVVAKD 35 (103)
T ss_pred ECCHHHHHHHHHHHHHcCCCcccEEEEEcC
Confidence 446667777888888889999999999984
No 263
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=21.31 E-value=7e+02 Score=24.17 Aligned_cols=103 Identities=11% Similarity=0.141 Sum_probs=66.7
Q ss_pred HHHHHHHHcCCCeEecCCCcC----CHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCCccc
Q 041428 41 SVFTAIVEGGYRHIDTAKQYG----VQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQLDYLD 116 (322)
Q Consensus 41 ~~l~~Al~~Gi~~~DTA~~Yg----~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iD 116 (322)
..|.+++++|- +-+.=.|| --..+.+.|... -.-.+.-.+-+ ..+...+++.++++.+.++..+=-
T Consensus 37 ~~lrr~v~~~~--l~SmIl~GPPG~GKTTlA~liA~~-----~~~~f~~~sAv---~~gvkdlr~i~e~a~~~~~~gr~t 106 (436)
T COG2256 37 KPLRRAVEAGH--LHSMILWGPPGTGKTTLARLIAGT-----TNAAFEALSAV---TSGVKDLREIIEEARKNRLLGRRT 106 (436)
T ss_pred chHHHHHhcCC--CceeEEECCCCCCHHHHHHHHHHh-----hCCceEEeccc---cccHHHHHHHHHHHHHHHhcCCce
Confidence 67888888873 32334576 255567777654 12223222222 345689999999998888866666
Q ss_pred eeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCH
Q 041428 117 LYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTL 170 (322)
Q Consensus 117 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~ 170 (322)
+++|....+.+ +..=++|--.+++|.|-.||.++-+|
T Consensus 107 iLflDEIHRfn-----------------K~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 107 ILFLDEIHRFN-----------------KAQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred EEEEehhhhcC-----------------hhhhhhhhhhhcCCeEEEEeccCCCC
Confidence 77775443331 23445688889999999999987764
No 264
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=21.18 E-value=3.4e+02 Score=25.92 Aligned_cols=74 Identities=23% Similarity=0.214 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCc---HHHHHHHHHcC-ceEEEeccCCC
Q 041428 145 EGVWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRN---DKILEACKKNG-IHVTAYSPLGS 219 (322)
Q Consensus 145 ~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~ll~~~~~~g-i~via~~pl~~ 219 (322)
.++.+.++++....-|...=+...+.+.++++++. ..+..++..+-||...- ..+.+.|+++| +.++.=++++.
T Consensus 105 ~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~at 182 (386)
T PF01053_consen 105 GGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFAT 182 (386)
T ss_dssp HHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTH
T ss_pred CcchhhhhhhhcccCcEEEEeCchhHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccc
Confidence 57888888766665555444444567888887765 34446677777877654 77999999999 99999888876
No 265
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=21.17 E-value=6.4e+02 Score=23.01 Aligned_cols=173 Identities=14% Similarity=0.082 Sum_probs=85.1
Q ss_pred cceeeccc--------CChhHHHHHHHHHHH-cCCCeEecCCCcCC------HHHHHHHHHHHHhcCCCCCcEEEEecC-
Q 041428 26 AVGLGTWK--------SGDEAFKSVFTAIVE-GGYRHIDTAKQYGV------QENIGLALKEAMQTGIQRKDLFVTSKL- 89 (322)
Q Consensus 26 ~lglG~~~--------~~~~~~~~~l~~Al~-~Gi~~~DTA~~Yg~------e~~lG~~l~~~~~~~~~R~~~~i~tK~- 89 (322)
.|.||+|. .++++..+.+...++ .|.+.+|--..|+. -..+-++|+..-+. +..+.|+.-+
T Consensus 71 iiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~---~p~l~vs~Tlp 147 (294)
T cd06543 71 IVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKE---YPDLKISFTLP 147 (294)
T ss_pred EEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHH---CCCcEEEEecC
Confidence 45777765 234444455555553 49999998666661 24456677665222 2244444433
Q ss_pred -CCCCCChHHHHHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCC
Q 041428 90 -WCADLSPDRVRSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNF 168 (322)
Q Consensus 90 -~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~ 168 (322)
.+..+.+..+ .+-++.+.-|+ ++|.+-+-.-+...... .. .--+.+..+.+.++.+=+--+=+ +
T Consensus 148 ~~p~gl~~~g~--~~l~~a~~~Gv-~~d~VNiMtmDyg~~~~-----~~----~mg~~a~~aa~~~~~ql~~~~~~---~ 212 (294)
T cd06543 148 VLPTGLTPDGL--NVLEAAAANGV-DLDTVNIMTMDYGSSAG-----SQ----DMGAAAISAAESLHDQLKDLYPK---L 212 (294)
T ss_pred CCCCCCChhHH--HHHHHHHHcCC-CcceeeeeeecCCCCCC-----cc----cHHHHHHHHHHHHHHHHHHHccC---C
Confidence 3344443332 35555556664 35554443333221100 00 11244555555555442211111 3
Q ss_pred CHHHHHHHHhhcCCCCceeceeeC--CCCCc--HHHHHHHHHcCceEEEeccCCC
Q 041428 169 TLKKLNKLLNFAKTKPSVCQMEMH--PGWRN--DKILEACKKNGIHVTAYSPLGS 219 (322)
Q Consensus 169 ~~~~l~~~~~~~~~~~~~~q~~~~--~~~~~--~~ll~~~~~~gi~via~~pl~~ 219 (322)
+..++-.. .++.|.+=+.... .+... ..+..+++++||+.++|..+..
T Consensus 213 s~~~~~~~---ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~R 264 (294)
T cd06543 213 SDAELWAM---IGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNR 264 (294)
T ss_pred CHHHHHHH---ccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccC
Confidence 33333222 2233333222221 12222 6799999999999999988865
No 266
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=21.16 E-value=3.9e+02 Score=23.47 Aligned_cols=91 Identities=12% Similarity=0.272 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHHHcCCccEEEec----CCCHHHHHHHHhhcCCCCceeceeeCCCCCc--HHHHHHHHHcCceEEEecc
Q 041428 143 DMEGVWREMEKLVKDGLVRDVGVC----NFTLKKLNKLLNFAKTKPSVCQMEMHPGWRN--DKILEACKKNGIHVTAYSP 216 (322)
Q Consensus 143 ~~~~~~~~L~~l~~~Gkir~iGvs----~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi~via~~p 216 (322)
..+++.++|..|+ +..|... .+....++.+.+..+. ..|.|+++. .+++..--+.|..++..+.
T Consensus 74 eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl------~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~V 143 (223)
T COG2102 74 EVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGL------KVYAPLWGRDPEELLEEMVEAGFEAIIVAV 143 (223)
T ss_pred hHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCC------EEeecccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 4577777888887 5555543 3334555666655443 345666654 5677666667776666555
Q ss_pred CCCCCCCCCCC----C---CHHHHHHHHhcCCCHH
Q 041428 217 LGSQGAGRDLI----H---DPTVERIAKKLNKSPG 244 (322)
Q Consensus 217 l~~~G~l~~~~----~---~~~l~~la~~~~~s~~ 244 (322)
-+. |+...++ . .+.+..+++++|+.|+
T Consensus 144 sa~-gL~~~~lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 144 SAE-GLDESWLGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred ecc-CCChHHhCCccCHHHHHHHHHHHHhcCCCcc
Confidence 554 5432222 2 2567777888887663
No 267
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.15 E-value=2e+02 Score=21.99 Aligned_cols=63 Identities=24% Similarity=0.314 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCCeEecCCCcC--CHHHHHHHHHHHHhcCCCCCcEEEEecC-CC-----------------CCCChHHH
Q 041428 40 KSVFTAIVEGGYRHIDTAKQYG--VQENIGLALKEAMQTGIQRKDLFVTSKL-WC-----------------ADLSPDRV 99 (322)
Q Consensus 40 ~~~l~~Al~~Gi~~~DTA~~Yg--~e~~lG~~l~~~~~~~~~R~~~~i~tK~-~~-----------------~~~~~~~i 99 (322)
..+..-.+++|.-|+-|-..|- .|..+--.|-+ ..+++++++|+ |. .+-.-..+
T Consensus 23 YsaYMpfl~nGglFVpTnk~y~iG~evfl~l~lld------~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~v 96 (117)
T COG3215 23 YSAYMPFLENGGLFVPTNKVYSIGEEVFLLLELLD------FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLKV 96 (117)
T ss_pred HHHHhHHHhcCcEEcccCCccccchhhhhhhhhcC------chhhccccceEEEEccCCCCCCCCceeeeccCCCchhhH
Confidence 4455556799999999999995 55555444432 36789999998 32 11123478
Q ss_pred HHHHHHHHH
Q 041428 100 RSALNNTLQ 108 (322)
Q Consensus 100 ~~~~~~SL~ 108 (322)
+.++|.-|.
T Consensus 97 r~~IE~~Lg 105 (117)
T COG3215 97 RNQIETLLG 105 (117)
T ss_pred HHHHHHHHH
Confidence 889988774
No 268
>PLN00191 enolase
Probab=21.12 E-value=7.9e+02 Score=24.09 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCccEEEec--CCCHHHHHHHHhhcCCCCceeceeeCCCCC---cHHHHHHHHHcCceEEEec
Q 041428 146 GVWREMEKLVKDGLVRDVGVC--NFTLKKLNKLLNFAKTKPSVCQMEMHPGWR---NDKILEACKKNGIHVTAYS 215 (322)
Q Consensus 146 ~~~~~L~~l~~~Gkir~iGvs--~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~ll~~~~~~gi~via~~ 215 (322)
+-|+.+.+|.+..+|.-+|=- ..++..+.++++.... +++++..+-.-. ..++..+|+++|+.++...
T Consensus 323 ~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aa--d~i~iKl~qiGGITea~~~a~lA~~~G~~~~ish 395 (457)
T PLN00191 323 DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKAC--NALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSH 395 (457)
T ss_pred ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCC--CEEEecccccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 446777888888888777722 2558888888877543 566665554332 2679999999999998743
No 269
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.07 E-value=6e+02 Score=22.67 Aligned_cols=128 Identities=15% Similarity=0.119 Sum_probs=69.3
Q ss_pred ceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCCCH-------HHHHHHHhhcCCCCceec
Q 041428 116 DLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNFTL-------KKLNKLLNFAKTKPSVCQ 188 (322)
Q Consensus 116 Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~-------~~l~~~~~~~~~~~~~~q 188 (322)
+-++||-|=....+...+.. +-......+++.+.++..+.. ---++|+.||.. +.++.+++..+. +
T Consensus 78 ~evlih~PmeP~~~~~~e~g-tL~~~~s~~e~~~rl~~a~~~-v~~~~GlnNhmGs~~tsn~~aM~~~m~~Lk~-----r 150 (250)
T COG2861 78 HEVLIHMPMEPFSYPKIEPG-TLRPGMSAEEILRRLRKAMNK-VPDAVGLNNHMGSRFTSNEDAMEKLMEALKE-----R 150 (250)
T ss_pred CEEEEeccCCcccCCCCCCC-CcccCCCHHHHHHHHHHHHhh-CccceeehhhhhhhhcCcHHHHHHHHHHHHH-----C
Confidence 44789988654443321111 222335567898889888876 667899999953 334444443221 1
Q ss_pred eeeCCCCCc---HHHHHHHHHcCceEEEeccCCCCCCCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhcCCEEecCCC
Q 041428 189 MEMHPGWRN---DKILEACKKNGIHVTAYSPLGSQGAGRDLIHDPTVERIAKKLNKSPGQILLKWGIHRGTSVIPKST 263 (322)
Q Consensus 189 ~~~~~~~~~---~~ll~~~~~~gi~via~~pl~~~G~l~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~~~i~g~~ 263 (322)
.-|.+.... .-.-..+++.||.++....|.. + +.-.....+.+ +-+.+++..+|.++.+|.-
T Consensus 151 ~l~flDs~T~a~S~a~~iAk~~gVp~~~rdvfLD-~---e~~~~~V~kql---------~~~~~~Ark~G~ai~IGh~ 215 (250)
T COG2861 151 GLYFLDSGTIANSLAGKIAKEIGVPVIKRDVFLD-D---EDTEAAVLKQL---------DAAEKLARKNGSAIGIGHP 215 (250)
T ss_pred CeEEEcccccccchhhhhHhhcCCceeeeeeeec-C---cCCHHHHHHHH---------HHHHHHHHhcCceEEecCC
Confidence 112222222 2344557788888888877765 3 11111111111 3455566666766666664
No 270
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=21.04 E-value=4.3e+02 Score=23.96 Aligned_cols=66 Identities=23% Similarity=0.261 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCC------------HHHHHHHHhhcCCCCceeceeeCCCCCc--HHHHHHHHHcCc
Q 041428 144 MEGVWREMEKLVKDGLVRDVGVCNFT------------LKKLNKLLNFAKTKPSVCQMEMHPGWRN--DKILEACKKNGI 209 (322)
Q Consensus 144 ~~~~~~~L~~l~~~Gkir~iGvs~~~------------~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~ll~~~~~~gi 209 (322)
....++...+++.+|++-.||=+... -+.+..+++.+..--..+|+..--.... .++-+++++.|+
T Consensus 106 m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~ 185 (285)
T COG1831 106 MRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGI 185 (285)
T ss_pred HHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCC
Confidence 45677788999999998888766653 1234444444443223466655444443 678888999887
No 271
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=21.03 E-value=6.1e+02 Score=22.77 Aligned_cols=94 Identities=17% Similarity=0.160 Sum_probs=56.1
Q ss_pred cceeecccCC--------hhHHHHHHHHHHHcCCCeEecC-CCcC--CHHHHHHHHHHHHhcCCCCCcEEEEecCCCC--
Q 041428 26 AVGLGTWKSG--------DEAFKSVFTAIVEGGYRHIDTA-KQYG--VQENIGLALKEAMQTGIQRKDLFVTSKLWCA-- 92 (322)
Q Consensus 26 ~lglG~~~~~--------~~~~~~~l~~Al~~Gi~~~DTA-~~Yg--~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~-- 92 (322)
.||.++|..+ +....+-..+......|.+..= ..|. +++.+-++.++ ..+++..+.|++..
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~p~~~t~~~W~~~------~p~~FrFsvK~~~~iT 77 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAPPSPETVLRWAEE------TPDDFRFSVKAPRAIT 77 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCCCCHHHHHHHHHh------CCCCeEEEEEeccccc
Confidence 5677777622 1111222233345556655532 2355 68888888875 48999999999531
Q ss_pred --CCCh---HHHHHHHHHHHHHhCCCccceeEeecCCCC
Q 041428 93 --DLSP---DRVRSALNNTLQELQLDYLDLYLIHWPFRL 126 (322)
Q Consensus 93 --~~~~---~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~ 126 (322)
.... ..+.+.+.+-++.|| +++..+++.-|-..
T Consensus 78 H~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 78 HQRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred chhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 1111 344445555566777 58999999987554
No 272
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=20.56 E-value=2.4e+02 Score=21.08 Aligned_cols=62 Identities=26% Similarity=0.260 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEEec
Q 041428 147 VWREMEKLVKDGLVRDVGVCNFTLKKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYS 215 (322)
Q Consensus 147 ~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~ 215 (322)
+-.+|...++.|++ .+|. .+..+.++....+..++-...+. +....+..+|++++|+++.|.
T Consensus 4 ~~~~l~~a~ragkl-~~G~-----~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Ip~~~~~ 65 (99)
T PRK01018 4 FNRELRVAVDTGKV-ILGS-----KRTIKAIKLGKAKLVIVASNCPK-DIKEDIEYYAKLSGIPVYEYE 65 (99)
T ss_pred HHHHHHHHHHcCCE-EEcH-----HHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 34457777788876 2343 45556666665544444444321 222778899999999987763
No 273
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.51 E-value=4.3e+02 Score=22.88 Aligned_cols=61 Identities=15% Similarity=0.244 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCccEEEecCC-CHHHHHHHHhhcCCCCceeceeeCCCCCcHHHHHHHHHcCceEEE
Q 041428 146 GVWREMEKLVKDGLVRDVGVCNF-TLKKLNKLLNFAKTKPSVCQMEMHPGWRNDKILEACKKNGIHVTA 213 (322)
Q Consensus 146 ~~~~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via 213 (322)
+..+.+++++++.-=-.||..+. +.++++.+.+.+. ++-.+|... .++++.|+++++.++.
T Consensus 52 ~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA------~FivsP~~~-~~vi~~a~~~~i~~iP 113 (212)
T PRK05718 52 AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGA------QFIVSPGLT-PPLLKAAQEGPIPLIP 113 (212)
T ss_pred cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCC------CEEECCCCC-HHHHHHHHHcCCCEeC
Confidence 44555666655433355887776 4677777777643 233334333 4899999999988873
No 274
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=20.46 E-value=8.1e+02 Score=23.98 Aligned_cols=101 Identities=15% Similarity=0.228 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHH----HHHhC-CCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHc-CCccEEEecC
Q 041428 94 LSPDRVRSALNNT----LQELQ-LDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLVKD-GLVRDVGVCN 167 (322)
Q Consensus 94 ~~~~~i~~~~~~S----L~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-Gkir~iGvs~ 167 (322)
.+.+.+...++.- ..+-| .=+.|++-|+.... ..+.+...++.+++. +. -+.|.+
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~-----------------dp~~v~~~Vk~V~~~~dv--PLSIDT 162 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG-----------------DPEKFAKAVKKVAETTDL--PLILCS 162 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC-----------------CHHHHHHHHHHHHHhcCC--CEEEeC
Confidence 3445555555444 12334 22578888887543 134556666666653 44 378889
Q ss_pred CCHHHHHHHHhhcC-CCCceeceeeCCCCCcHHHHHHHHHcCceEEEecc
Q 041428 168 FTLKKLNKLLNFAK-TKPSVCQMEMHPGWRNDKILEACKKNGIHVTAYSP 216 (322)
Q Consensus 168 ~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~~~ll~~~~~~gi~via~~p 216 (322)
++++.+++.++.+. ..+.+.-+.. +.-..+.+.|+++|..++...+
T Consensus 163 ~dpevleaAleagad~~plI~Sat~---dN~~~m~~la~~yg~pvVv~~~ 209 (450)
T PRK04165 163 EDPAVLKAALEVVADRKPLLYAATK---ENYEEMAELAKEYNCPLVVKAP 209 (450)
T ss_pred CCHHHHHHHHHhcCCCCceEEecCc---chHHHHHHHHHHcCCcEEEEch
Confidence 99999999998874 3344333221 1126788888888888888554
No 275
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.41 E-value=6e+02 Score=24.16 Aligned_cols=99 Identities=11% Similarity=0.092 Sum_probs=59.6
Q ss_pred eeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHHHH-HcCC---ccEEEecCC--CHHHHHHHHhhcC-C---CCce
Q 041428 117 LYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEKLV-KDGL---VRDVGVCNF--TLKKLNKLLNFAK-T---KPSV 186 (322)
Q Consensus 117 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~-~~Gk---ir~iGvs~~--~~~~l~~~~~~~~-~---~~~~ 186 (322)
.+-||.+++.......+.+ . ..+++++++++.++. +.|+ |+++=+.++ +.+.++++.+... . +..+
T Consensus 241 avSLha~d~e~R~~l~p~n--~--~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~V 316 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVN--T--RWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHV 316 (373)
T ss_pred EEEeCCCCHHHHHHhcCcc--c--CCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEE
Confidence 3678888764331110100 0 145789999988887 4465 566655544 3444544444433 2 3467
Q ss_pred eceeeCCCCC-----c-----HHHHHHHHHcCceEEEeccCCC
Q 041428 187 CQMEMHPGWR-----N-----DKILEACKKNGIHVTAYSPLGS 219 (322)
Q Consensus 187 ~q~~~~~~~~-----~-----~~ll~~~~~~gi~via~~pl~~ 219 (322)
+=++||+... . ....+..+++||.+......|.
T Consensus 317 NLIpyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 317 NLIPLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred EEEccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 7788888543 1 3466778889999999888754
No 276
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=20.29 E-value=6.1e+02 Score=22.45 Aligned_cols=140 Identities=16% Similarity=0.136 Sum_probs=79.1
Q ss_pred HHHHHcCCCeEecCCC-cC-----CHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHHHHHHHHHHhCCCccce
Q 041428 44 TAIVEGGYRHIDTAKQ-YG-----VQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRSALNNTLQELQLDYLDL 117 (322)
Q Consensus 44 ~~Al~~Gi~~~DTA~~-Yg-----~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl 117 (322)
..|++.|..+||.=+- -| ...++- .++.. -..+..++..++.....|..+..+....- .-|+|||=+
T Consensus 14 ~~a~~~gaDiID~K~P~~GaLGA~~~~vi~-~i~~~-----~~~~~pvSAtiGDlp~~p~~~~~aa~~~a-~~GvdyvKv 86 (235)
T PF04476_consen 14 EEALAGGADIIDLKNPAEGALGALFPWVIR-EIVAA-----VPGRKPVSATIGDLPMKPGTASLAALGAA-ATGVDYVKV 86 (235)
T ss_pred HHHHhCCCCEEEccCCCCCCCCCCCHHHHH-HHHHH-----cCCCCceEEEecCCCCCchHHHHHHHHHH-hcCCCEEEE
Confidence 5678999999996433 33 244443 44443 23336677777766667777776666554 348887776
Q ss_pred eEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHH-------HHHcCCccEEEecCCC------HHHHHHHHhhcCCCC
Q 041428 118 YLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEK-------LVKDGLVRDVGVCNFT------LKKLNKLLNFAKTKP 184 (322)
Q Consensus 118 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-------l~~~Gkir~iGvs~~~------~~~l~~~~~~~~~~~ 184 (322)
=+.-.. +.++..+.|+. ...+.++-+.+.+.+. +..+-++....+.
T Consensus 87 Gl~g~~-------------------~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~-- 145 (235)
T PF04476_consen 87 GLFGCK-------------------DYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGF-- 145 (235)
T ss_pred ecCCCC-------------------CHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCC--
Confidence 543221 12333333333 3344567788888874 4444445444443
Q ss_pred ceeceeeCCCC------Cc-----HHHHHHHHHcCceE
Q 041428 185 SVCQMEMHPGW------RN-----DKILEACKKNGIHV 211 (322)
Q Consensus 185 ~~~q~~~~~~~------~~-----~~ll~~~~~~gi~v 211 (322)
+.+++.--.-+ .- .+.++.|+++|+.+
T Consensus 146 ~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 146 DGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred CEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 55555532222 11 45777788877655
No 277
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=20.25 E-value=5.9e+02 Score=22.56 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCCccceeEeecCCCCCCCCCCCCCCCccccccHHHHHHHHHH-HHHcCCccEEEecCC-----CHHHH
Q 041428 100 RSALNNTLQELQLDYLDLYLIHWPFRLKEGASRPPKDGEVLEFDMEGVWREMEK-LVKDGLVRDVGVCNF-----TLKKL 173 (322)
Q Consensus 100 ~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-l~~~Gkir~iGvs~~-----~~~~l 173 (322)
.+.++..|+..| +|||.+-+-|-... ...++.++..-+ +++.|---+.| .++ ....+
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~---------------l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~ 73 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSA---------------LIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKF 73 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEe---------------eccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhH
Confidence 456777788888 79999988774332 122344444444 44555555555 212 12333
Q ss_pred HHHHhhcC-CCCceeceeeCCCCCc----HHHHHHHHHcCceEEE
Q 041428 174 NKLLNFAK-TKPSVCQMEMHPGWRN----DKILEACKKNGIHVTA 213 (322)
Q Consensus 174 ~~~~~~~~-~~~~~~q~~~~~~~~~----~~ll~~~~~~gi~via 213 (322)
++.++.+. ..++++.+.-....-+ ..+++.++++|..+..
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred HHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 43333332 3345555554433332 4577777777776664
No 278
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=20.19 E-value=8e+02 Score=23.79 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=23.5
Q ss_pred CCCCCChHHHHHHHHHHHHHhCCCccceeEee
Q 041428 90 WCADLSPDRVRSALNNTLQELQLDYLDLYLIH 121 (322)
Q Consensus 90 ~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH 121 (322)
+.+..+.+.+++.++..++ |+.++|++|.|.
T Consensus 223 GlPgqT~e~~~~~l~~~~~-l~~~~is~y~L~ 253 (449)
T PRK09058 223 GLPGQTPEIWQQDLAIVRD-LGLDGVDLYALN 253 (449)
T ss_pred eCCCCCHHHHHHHHHHHHh-cCCCEEEEeccc
Confidence 4456677888888777654 899999999875
No 279
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=20.11 E-value=6.8e+02 Score=24.17 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcC--CccEEEecCC--CHHHHHHHHhhcCCCCceeceeeCCCCC---cHHHHHHHHHcCceEEE
Q 041428 147 VWREMEKLVKDG--LVRDVGVCNF--TLKKLNKLLNFAKTKPSVCQMEMHPGWR---NDKILEACKKNGIHVTA 213 (322)
Q Consensus 147 ~~~~L~~l~~~G--kir~iGvs~~--~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~ll~~~~~~gi~via 213 (322)
-|+.+.+|.+.- .+.-.|=-++ ++..+.++++.... +++|+..+-.-. ..++...|+++|+.++.
T Consensus 291 D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~--d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 291 DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVA--NSILIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCC--CEEEecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 356666676654 5554443322 58888888876543 666766554332 26789999999998664
No 280
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=20.10 E-value=7.8e+02 Score=23.62 Aligned_cols=67 Identities=21% Similarity=0.285 Sum_probs=36.7
Q ss_pred cccHHHHHHHHHHHHHcCCccEEEec-----CC-----CHHHHHHHHhhcC-CC-Cceece-eeCCCCCcHHHHHHHHHc
Q 041428 141 EFDMEGVWREMEKLVKDGLVRDVGVC-----NF-----TLKKLNKLLNFAK-TK-PSVCQM-EMHPGWRNDKILEACKKN 207 (322)
Q Consensus 141 ~~~~~~~~~~L~~l~~~Gkir~iGvs-----~~-----~~~~l~~~~~~~~-~~-~~~~q~-~~~~~~~~~~ll~~~~~~ 207 (322)
..+++++++.++.+++.| ++.|-+. ++ +...+.++++... .. ...+.+ ..++..-..++++..++.
T Consensus 163 ~r~~e~Vv~Ei~~l~~~g-~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~~~i~~~r~~~~~p~~~~~ell~~~~~~ 241 (430)
T TIGR01125 163 SRPIEEILKEAERLVDQG-VKEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGGIYWIRMHYLYPDELTDDVIDLMAEG 241 (430)
T ss_pred ecCHHHHHHHHHHHHHCC-CcEEEEEeECCCccccCCCCcccHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHhhC
Confidence 456789999999999987 4554432 22 1234444444321 11 111111 122333347899999887
Q ss_pred C
Q 041428 208 G 208 (322)
Q Consensus 208 g 208 (322)
|
T Consensus 242 ~ 242 (430)
T TIGR01125 242 P 242 (430)
T ss_pred C
Confidence 5
No 281
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=20.05 E-value=6.5e+02 Score=22.70 Aligned_cols=162 Identities=14% Similarity=0.051 Sum_probs=85.1
Q ss_pred CChhHHHHHHHHHHHcC-CCeEec-------CC---CcC-CHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCChHHHHH
Q 041428 34 SGDEAFKSVFTAIVEGG-YRHIDT-------AK---QYG-VQENIGLALKEAMQTGIQRKDLFVTSKLWCADLSPDRVRS 101 (322)
Q Consensus 34 ~~~~~~~~~l~~Al~~G-i~~~DT-------A~---~Yg-~e~~lG~~l~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~ 101 (322)
.+.++..+..+.+.+.| +..|+- +. .|+ +.+.+-+.++...+ .-++-|..|+... .+.+.
T Consensus 101 ~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~----~~~~pv~vKl~~~---~~~~~- 172 (301)
T PRK07259 101 STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKE----VVKVPVIVKLTPN---VTDIV- 172 (301)
T ss_pred CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHH----hcCCCEEEEcCCC---chhHH-
Confidence 46678888888888898 999976 21 122 45556666654311 1157788998531 12222
Q ss_pred HHHHHHHHhCCCccceeE-eecCCCCC-CC-----CCCCCCCCccccccHHHHHHHHHHHHHcCCccEEEecCC-CHHHH
Q 041428 102 ALNNTLQELQLDYLDLYL-IHWPFRLK-EG-----ASRPPKDGEVLEFDMEGVWREMEKLVKDGLVRDVGVCNF-TLKKL 173 (322)
Q Consensus 102 ~~~~SL~~Lg~d~iDl~~-lH~p~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-~~~~l 173 (322)
.+-+.++..|.|.|++.- ++...... .. .....-.+.. ...-.++.+.++++.=++-=||+... +++.+
T Consensus 173 ~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~---~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da 249 (301)
T PRK07259 173 EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPA---IKPIALRMVYQVYQAVDIPIIGMGGISSAEDA 249 (301)
T ss_pred HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcC---cccccHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 333456777766665421 11110000 00 0000000000 00124566666666656888999987 68888
Q ss_pred HHHHhhcCCCCceeceeeCCCC-Cc------HHHHHHHHHcCc
Q 041428 174 NKLLNFAKTKPSVCQMEMHPGW-RN------DKILEACKKNGI 209 (322)
Q Consensus 174 ~~~~~~~~~~~~~~q~~~~~~~-~~------~~ll~~~~~~gi 209 (322)
.+++..+ . +++|+---.+. +. .++-.+..++|.
T Consensus 250 ~~~l~aG-A--d~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 250 IEFIMAG-A--SAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHcC-C--CceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 8888754 3 66666433332 21 345555555553
Done!