BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041429
         (408 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YAY|A Chain A, The Crystal Structure Of Leishmania Major Dutpase In
           Complex With Substrate Analogue Dupnpp
 pdb|2YAZ|A Chain A, The Crystal Structure Of Leishmania Major Dutpase In
           Complex Dump
 pdb|2YAZ|B Chain B, The Crystal Structure Of Leishmania Major Dutpase In
           Complex Dump
 pdb|2YAZ|D Chain D, The Crystal Structure Of Leishmania Major Dutpase In
           Complex Dump
 pdb|2YAZ|E Chain E, The Crystal Structure Of Leishmania Major Dutpase In
           Complex Dump
 pdb|2YB0|A Chain A, The Crystal Structure Of Leishmania Major Dutpase In
           Complex Deoxyuridine
 pdb|2YB0|B Chain B, The Crystal Structure Of Leishmania Major Dutpase In
           Complex Deoxyuridine
 pdb|2YB0|D Chain D, The Crystal Structure Of Leishmania Major Dutpase In
           Complex Deoxyuridine
 pdb|2YB0|E Chain E, The Crystal Structure Of Leishmania Major Dutpase In
           Complex Deoxyuridine
          Length = 271

 Score = 28.5 bits (62), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 258 GPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIV 302
           GP  K+ ++ N+ GA LH L +    +  MI        P W+ V
Sbjct: 1   GPAMKRARSANIPGAILHSLAELQDGLNAMID-------PSWRAV 38


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,445,959
Number of Sequences: 62578
Number of extensions: 432849
Number of successful extensions: 1249
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1242
Number of HSP's gapped (non-prelim): 9
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)