Query 041429
Match_columns 408
No_of_seqs 161 out of 1544
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:56:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1230 CzcD Co/Zn/Cd efflux s 100.0 2.3E-56 4.9E-61 427.6 34.3 274 54-408 20-293 (296)
2 KOG1482 Zn2+ transporter [Inor 100.0 7.9E-57 1.7E-61 433.6 29.3 313 34-408 52-365 (379)
3 PRK03557 zinc transporter ZitB 100.0 4E-51 8.6E-56 401.9 37.1 273 55-408 18-291 (312)
4 KOG1484 Putative Zn2+ transpor 100.0 3.9E-50 8.5E-55 381.9 29.7 311 53-408 32-346 (354)
5 KOG1483 Zn2+ transporter ZNT1 100.0 1.2E-51 2.6E-56 398.9 18.9 346 55-407 8-368 (404)
6 PRK09509 fieF ferrous iron eff 100.0 8.9E-49 1.9E-53 383.4 35.5 275 54-408 9-286 (299)
7 COG0053 MMT1 Predicted Co/Zn/C 100.0 2E-48 4.4E-53 380.1 36.1 278 51-408 8-289 (304)
8 TIGR01297 CDF cation diffusion 100.0 3.3E-46 7.1E-51 359.4 30.7 262 68-408 2-267 (268)
9 PF01545 Cation_efflux: Cation 100.0 1.1E-44 2.5E-49 351.3 14.4 275 58-408 1-280 (284)
10 KOG1485 Mitochondrial Fe2+ tra 100.0 7.9E-37 1.7E-41 300.1 28.2 274 51-407 110-398 (412)
11 COG3965 Predicted Co/Zn/Cd cat 99.9 1.4E-25 3E-30 206.6 21.0 275 54-406 18-306 (314)
12 KOG2802 Membrane protein HUEL 99.8 1.7E-18 3.8E-23 166.5 15.3 126 56-181 207-333 (503)
13 COG0053 MMT1 Predicted Co/Zn/C 98.1 3.7E-05 8E-10 75.7 12.2 92 55-154 120-211 (304)
14 TIGR01297 CDF cation diffusion 97.9 0.00013 2.8E-09 70.1 11.6 92 56-155 98-189 (268)
15 PRK09509 fieF ferrous iron eff 97.9 0.00016 3.5E-09 70.9 12.1 90 57-154 120-209 (299)
16 PRK03557 zinc transporter ZitB 97.0 0.0064 1.4E-07 60.1 11.6 73 76-155 145-217 (312)
17 KOG1485 Mitochondrial Fe2+ tra 95.5 0.044 9.6E-07 55.4 7.5 90 56-153 231-320 (412)
18 PF02535 Zip: ZIP Zinc transpo 92.3 7.1 0.00015 38.0 16.1 32 121-152 36-67 (317)
19 PF01545 Cation_efflux: Cation 91.5 0.19 4.2E-06 48.4 3.8 90 58-154 109-201 (284)
20 COG1230 CzcD Co/Zn/Cd efflux s 90.7 4 8.8E-05 40.0 12.0 73 264-336 45-123 (296)
21 PF14535 AMP-binding_C_2: AMP- 84.6 9.4 0.0002 30.6 8.9 67 338-406 5-76 (96)
22 PF02535 Zip: ZIP Zinc transpo 77.5 36 0.00078 33.0 12.0 68 83-151 203-286 (317)
23 PF03780 Asp23: Asp23 family; 77.0 17 0.00037 29.4 8.1 50 358-407 50-105 (108)
24 PLN02601 beta-carotene hydroxy 76.6 19 0.00042 34.6 9.1 78 104-188 83-162 (303)
25 COG4858 Uncharacterized membra 76.6 61 0.0013 29.6 12.3 48 135-182 102-150 (226)
26 PF09580 Spore_YhcN_YlaJ: Spor 72.3 23 0.00049 31.6 8.4 66 337-407 75-141 (177)
27 PRK10019 nickel/cobalt efflux 69.4 1.2E+02 0.0025 29.7 13.8 25 124-148 87-111 (279)
28 KOG1484 Putative Zn2+ transpor 67.8 79 0.0017 31.6 11.4 73 264-338 58-136 (354)
29 COG3696 Putative silver efflux 67.2 34 0.00073 38.6 9.5 67 340-406 580-656 (1027)
30 KOG2082 K+/Cl- cotransporter K 62.4 86 0.0019 34.9 11.2 56 116-180 535-592 (1075)
31 PF01883 DUF59: Domain of unkn 62.2 36 0.00077 25.5 6.4 47 355-404 26-72 (72)
32 PF07444 Ycf66_N: Ycf66 protei 59.3 31 0.00068 27.3 5.7 48 274-323 32-82 (84)
33 KOG1483 Zn2+ transporter ZNT1 58.0 46 0.001 33.8 7.9 71 263-333 31-107 (404)
34 COG2215 ABC-type uncharacteriz 54.2 2.3E+02 0.0049 27.9 17.5 31 302-332 236-266 (303)
35 TIGR02945 SUF_assoc FeS assemb 50.4 1.3E+02 0.0028 24.0 8.4 42 366-407 37-78 (99)
36 COG4956 Integral membrane prot 49.3 2.8E+02 0.0061 27.6 13.4 39 298-336 106-144 (356)
37 PF03147 FDX-ACB: Ferredoxin-f 48.8 65 0.0014 25.6 6.2 66 335-400 16-92 (94)
38 TIGR02159 PA_CoA_Oxy4 phenylac 47.8 74 0.0016 27.9 6.8 42 364-406 23-64 (146)
39 PF01037 AsnC_trans_reg: AsnC 47.6 21 0.00045 26.4 3.0 59 338-405 11-69 (74)
40 KOG0255 Synaptic vesicle trans 45.2 3.7E+02 0.0081 27.8 13.1 57 278-336 212-268 (521)
41 PRK10263 DNA translocase FtsK; 45.2 6.1E+02 0.013 30.3 17.5 8 298-305 180-187 (1355)
42 PF11712 Vma12: Endoplasmic re 42.2 1.5E+02 0.0032 25.6 7.8 49 56-104 75-126 (142)
43 TIGR03406 FeS_long_SufT probab 41.0 1.5E+02 0.0032 26.8 7.8 40 367-406 114-153 (174)
44 PF09877 DUF2104: Predicted me 40.9 2E+02 0.0043 23.5 7.8 20 119-138 78-97 (99)
45 PF09685 Tic20: Tic20-like pro 40.9 1.9E+02 0.004 23.1 9.0 65 53-118 40-104 (109)
46 PF11381 DUF3185: Protein of u 40.6 1.2E+02 0.0026 22.4 5.8 46 130-175 9-57 (59)
47 PF01390 SEA: SEA domain; Int 40.4 1.8E+02 0.004 23.0 7.8 52 353-404 51-104 (107)
48 TIGR00489 aEF-1_beta translati 40.4 1.9E+02 0.0041 23.1 7.6 67 335-405 15-83 (88)
49 TIGR00439 ftsX putative protei 40.1 1.6E+02 0.0036 28.9 8.8 67 336-403 78-162 (309)
50 PF11654 DUF2665: Protein of u 39.4 29 0.00062 24.4 2.3 17 300-316 5-21 (47)
51 PRK02983 lysS lysyl-tRNA synth 38.9 7.1E+02 0.015 29.3 18.7 44 304-350 206-249 (1094)
52 COG4035 Predicted membrane pro 38.6 21 0.00045 28.7 1.7 21 119-139 85-105 (108)
53 KOG2877 sn-1,2-diacylglycerol 37.3 2.5E+02 0.0055 28.6 9.5 28 262-289 109-136 (389)
54 PRK10019 nickel/cobalt efflux 36.3 4.2E+02 0.009 25.9 11.2 27 125-151 252-278 (279)
55 PF05977 MFS_3: Transmembrane 36.2 5.5E+02 0.012 27.2 18.8 33 365-398 422-456 (524)
56 COG2177 FtsX Cell division pro 36.1 2.1E+02 0.0044 28.2 8.6 69 330-403 65-150 (297)
57 PF06570 DUF1129: Protein of u 36.0 3.5E+02 0.0075 24.8 13.5 20 61-80 86-105 (206)
58 TIGR02898 spore_YhcN_YlaJ spor 35.4 2E+02 0.0044 25.5 7.7 63 339-407 56-122 (158)
59 PRK11118 putative monooxygenas 34.3 2E+02 0.0044 23.5 6.7 60 341-406 25-85 (100)
60 PF02700 PurS: Phosphoribosylf 33.9 1.6E+02 0.0034 23.0 6.0 62 339-407 18-79 (80)
61 KOG2568 Predicted membrane pro 33.6 6.1E+02 0.013 27.0 11.9 29 264-292 372-400 (518)
62 KOG1482 Zn2+ transporter [Inor 32.6 1.3E+02 0.0028 30.5 6.5 74 260-333 92-171 (379)
63 MTH00140 COX2 cytochrome c oxi 31.6 2.3E+02 0.0049 26.6 7.9 30 113-142 51-80 (228)
64 cd02413 40S_S3_KH K homology R 31.6 1.9E+02 0.0041 22.5 6.2 53 353-406 18-72 (81)
65 PF02790 COX2_TM: Cytochrome C 29.5 2.5E+02 0.0055 21.2 7.2 33 110-142 49-81 (84)
66 PRK05783 hypothetical protein; 29.4 1.7E+02 0.0037 23.1 5.5 61 338-408 19-83 (84)
67 PRK13262 ureE urease accessory 27.7 40 0.00086 31.9 2.0 8 196-203 204-211 (231)
68 PRK11023 outer membrane lipopr 27.7 1.3E+02 0.0028 27.4 5.3 68 329-405 81-148 (191)
69 TIGR00911 2A0308 L-type amino 27.5 7.2E+02 0.016 25.8 13.0 33 90-122 394-427 (501)
70 PF04972 BON: BON domain; Int 27.3 38 0.00081 24.5 1.4 30 329-358 30-59 (64)
71 COG2092 EFB1 Translation elong 27.2 3.3E+02 0.0071 21.8 7.5 66 335-404 15-82 (88)
72 COG1279 Lysine efflux permease 27.1 3.6E+02 0.0077 25.0 8.0 92 266-361 34-126 (202)
73 TIGR00907 2A0304 amino acid pe 26.9 6.8E+02 0.015 25.8 11.3 28 96-123 394-421 (482)
74 PRK12585 putative monovalent c 26.8 3.2E+02 0.0069 25.1 7.5 16 277-292 42-57 (197)
75 PRK10614 multidrug efflux syst 25.2 2.5E+02 0.0054 32.5 8.2 49 340-394 65-113 (1025)
76 PRK10555 aminoglycoside/multid 25.1 2.7E+02 0.0059 32.3 8.5 50 341-395 64-113 (1037)
77 PF07332 DUF1469: Protein of u 24.7 3.7E+02 0.008 22.0 7.2 44 305-348 73-117 (121)
78 cd04870 ACT_PSP_1 CT domains f 24.6 3E+02 0.0065 20.5 8.6 58 338-399 12-69 (75)
79 PF08002 DUF1697: Protein of u 24.0 3.1E+02 0.0066 23.5 6.7 53 337-400 19-71 (137)
80 PF13740 ACT_6: ACT domain; PD 23.7 3.2E+02 0.0069 20.5 7.9 57 338-399 15-71 (76)
81 PRK02047 hypothetical protein; 23.6 1.7E+02 0.0036 23.4 4.6 58 338-399 29-87 (91)
82 PRK15127 multidrug efflux syst 23.4 3.1E+02 0.0067 31.9 8.5 45 349-395 69-113 (1049)
83 PRK11179 DNA-binding transcrip 23.3 2.1E+02 0.0045 24.8 5.7 60 337-405 81-140 (153)
84 cd04869 ACT_GcvR_2 ACT domains 22.9 3.2E+02 0.007 20.2 8.8 64 338-405 12-80 (81)
85 PRK10599 calcium/sodium:proton 22.7 8.2E+02 0.018 24.9 11.2 49 63-111 76-129 (366)
86 MTH00168 COX2 cytochrome c oxi 22.6 3.5E+02 0.0077 25.3 7.4 29 113-141 51-79 (225)
87 cd04887 ACT_MalLac-Enz ACT_Mal 22.3 3.1E+02 0.0068 19.9 6.5 50 338-389 12-61 (74)
88 PF11712 Vma12: Endoplasmic re 22.3 4E+02 0.0087 22.9 7.2 52 126-177 79-131 (142)
89 MTH00047 COX2 cytochrome c oxi 22.2 3.1E+02 0.0068 25.1 6.8 34 109-142 35-68 (194)
90 PF01810 LysE: LysE type trans 21.8 3.8E+02 0.0083 23.6 7.3 68 263-332 21-88 (191)
91 PF15220 HILPDA: Hypoxia-induc 21.7 3E+02 0.0064 19.9 4.9 29 130-158 9-38 (63)
92 PF04865 Baseplate_J: Baseplat 21.4 4.8E+02 0.011 24.1 8.2 54 337-393 119-173 (243)
93 PF08803 ydhR: Putative mono-o 20.7 4.6E+02 0.01 21.3 6.6 60 341-406 22-82 (97)
94 PF02532 PsbI: Photosystem II 20.7 2E+02 0.0043 18.9 3.6 24 58-81 4-27 (36)
95 PRK00435 ef1B elongation facto 20.6 4.4E+02 0.0096 21.0 7.3 67 335-405 15-83 (88)
96 PF02628 COX15-CtaA: Cytochrom 20.4 7.8E+02 0.017 23.8 15.3 57 55-111 96-155 (302)
97 PRK09304 arginine exporter pro 20.3 4.7E+02 0.01 23.8 7.7 55 269-325 37-91 (207)
98 PF05915 DUF872: Eukaryotic pr 20.1 4E+02 0.0087 22.3 6.4 45 126-170 41-87 (115)
No 1
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-56 Score=427.59 Aligned_cols=274 Identities=37% Similarity=0.672 Sum_probs=260.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHH
Q 041429 54 SMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQ 133 (408)
Q Consensus 54 ~~~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~ 133 (408)
.+|++++++++|.+||++|+++|+++||+||+||+.||+.|+++.+++++|.++++||++++|||||.|+|.|++|++++
T Consensus 20 ~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav 99 (296)
T COG1230 20 NERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNAL 99 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccccCCCC
Q 041429 134 LIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGHGHDHHDHGMGHRHGSRITTDHHE 213 (408)
Q Consensus 134 ~L~~~~~~i~~ea~~~l~~~~~~~~~~~~~~~~~~~l~vn~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (408)
+|+.+++++++||++||++|.+. +...|++++++|+++|+++++.+.++
T Consensus 100 ~Li~~s~~I~~EAi~R~~~P~~i-~~~~ml~va~~GL~vN~~~a~ll~~~------------------------------ 148 (296)
T COG1230 100 LLIVVSLLILWEAIQRLLAPPPI-HYSGMLVVAIIGLVVNLVSALLLHKG------------------------------ 148 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCC-CccchHHHHHHHHHHHHHHHHHhhCC------------------------------
Confidence 99999999999999999997644 45889999999999999999999741
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCccccCCccccCCCCCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041429 214 EHPRGEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAII 293 (408)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~~~ 293 (408)
+.+|.|+|++++|+++|+++|++++++++++
T Consensus 149 -------------------------------------------------~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i 179 (296)
T COG1230 149 -------------------------------------------------HEENLNMRGAYLHVLGDALGSVGVIIAAIVI 179 (296)
T ss_pred -------------------------------------------------CcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1368899999999999999999999999999
Q ss_pred HhccCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCcccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEE
Q 041429 294 WYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACH 373 (408)
Q Consensus 294 ~~~~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~ 373 (408)
+++ +|+|+||+++++++++++..+++++|++..+|++..|+..+.+++++.+.+.|||.+++++|+|+++++...+++|
T Consensus 180 ~~~-~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l~~~~~v~~vhdlHvWsi~~~~~~~t~H 258 (296)
T COG1230 180 RFT-GWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALLRIPGVASVHDLHVWSITGGEHALTLH 258 (296)
T ss_pred HHh-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHhcCCCccceeecccCCCCCCceeEEEE
Confidence 886 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHHHHHHhhCCCceEEEEecC
Q 041429 374 VKIQPEANADLVLNNVIDYIRREYNIIHVTIQIER 408 (408)
Q Consensus 374 v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIqie~ 408 (408)
+++++..+.+.+++++++++.++|++.|+|||+|+
T Consensus 259 v~v~~~~~~~~~~~~~~~~l~~~~~I~hvTiQ~e~ 293 (296)
T COG1230 259 VVVDEVADADAALDQIVRRLLEKYGIEHVTIQLET 293 (296)
T ss_pred EEecCccchHHHHHHHHHHHhhhcCcceEEEEecC
Confidence 99996677777999999999999999999999996
No 2
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-57 Score=433.56 Aligned_cols=313 Identities=57% Similarity=0.916 Sum_probs=282.7
Q ss_pred CCCCCCCCcCCCccHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCC
Q 041429 34 APCGFADAATNSNDARERSASMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESN 113 (408)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~ 113 (408)
.+|++++....... .++...+|+++++.++++.||+.|+++|+.+||+|+++||.|.+.|+.++.++|+++|+++||++
T Consensus 52 ~~c~~~~~~~~~~~-~~~~~~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~ 130 (379)
T KOG1482|consen 52 HHCHRHPDSCDSSD-AKRRAAERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPAT 130 (379)
T ss_pred cccccCCCCCccch-hhhhhhhhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCC
Confidence 67776644333332 23333679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCCCC
Q 041429 114 PRQSYGFFRVEILGALVSMQLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHD-HGHGHGHGH 192 (408)
Q Consensus 114 ~~~p~G~~R~E~l~~l~~~~~L~~~~~~i~~ea~~~l~~~~~~~~~~~~~~~~~~~l~vn~i~~~~~~~~-~~h~~~~~~ 192 (408)
+|++|||.|.|.++++++.+.+|++.+.++++|++|+++++.+.+..+|++++.+|+++|+++.+++.+. |+|+|++
T Consensus 131 ~r~sfG~~R~Evlgal~Sv~~IW~~tgvLV~~Ai~Rl~s~~~ev~g~~m~i~a~~gv~vNiim~~vL~~~~h~h~H~~-- 208 (379)
T KOG1482|consen 131 KRMSFGFHRAEVLGALVSVLLIWVVTGVLVYEAIQRLLSGDYEVNGGIMLITAAVGVAVNIIMGFVLHQSGHGHSHGG-- 208 (379)
T ss_pred CceecceehHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCceeecceEEEEEeehhhhhhhhhhhhhcccCCCCCCCC--
Confidence 9999999999999999999999999999999999999999989999999999999999999999999865 3332222
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCccccCCccccCCCCCCCCCCcccccccchhhHHH
Q 041429 193 DHHDHGMGHRHGSRITTDHHEEHPRGEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGA 272 (408)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~ 272 (408)
+++|||.|... . ..|.|+|++
T Consensus 209 ---~~s~g~~h~~~-----------------------------------------------------~---~~n~nvraA 229 (379)
T KOG1482|consen 209 ---SHSHGHSHDHG-----------------------------------------------------E---ELNLNVRAA 229 (379)
T ss_pred ---CCCcCcccccc-----------------------------------------------------c---ccchHHHHH
Confidence 22223332211 0 138999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCcccHHHHHHHHHcCcCc
Q 041429 273 YLHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEV 352 (408)
Q Consensus 273 ~~h~~~D~l~sv~vli~~~~~~~~~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~~~~~~i~~~l~~~~gV 352 (408)
+.|+++|+++|+||++++.++|++|+|+++||+|+++++++++.++.+++|+.+.+||+.+|.+.+.+.+++++..++||
T Consensus 230 yiHVlGDliQSvGV~iaa~Ii~f~P~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~~l~~iegV 309 (379)
T KOG1482|consen 230 FVHVLGDLIQSVGVLIAALIIYFKPEYKIADPICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKKGLLSIEGV 309 (379)
T ss_pred HHHHHHHHHHHHHHHhhheeEEecccceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHhhhcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEEecC
Q 041429 353 VAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQIER 408 (408)
Q Consensus 353 ~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIqie~ 408 (408)
+.||++|+|.++-|+..+++||.++++++.++|+++++++|+++|++.+||||+||
T Consensus 310 ~~VHdLhIWsiTv~k~~ls~Hv~i~~~ad~~~vL~~~~~~i~~~~~~~~vTiQie~ 365 (379)
T KOG1482|consen 310 KAVHDLHIWSITVGKVALSVHLAIDSEADAEEVLDEARSLIKRRYGISHVTIQIEP 365 (379)
T ss_pred eEEEEEEEEEEecCceEEEEEEeecCCCCHHHHHHHHHHHHHhhcceEEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999997
No 3
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00 E-value=4e-51 Score=401.87 Aligned_cols=273 Identities=34% Similarity=0.612 Sum_probs=252.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHH
Q 041429 55 MRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQL 134 (408)
Q Consensus 55 ~~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~~ 134 (408)
+|++++++++|++++++|+++|+++||+||+|||+|++.|+++.++++++.++++||||++|||||+|+|++++++++++
T Consensus 18 ~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~~ 97 (312)
T PRK03557 18 ARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIA 97 (312)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccccCCCCC
Q 041429 135 IWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGHGHDHHDHGMGHRHGSRITTDHHEE 214 (408)
Q Consensus 135 L~~~~~~i~~ea~~~l~~~~~~~~~~~~~~~~~~~l~vn~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (408)
|++++++++++|+.++++|.+ .+..++++++++++++|+++++++++
T Consensus 98 l~~~~~~i~~eai~~l~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~-------------------------------- 144 (312)
T PRK03557 98 LVVITILIVWEAIERFRTPRP-VAGGMMMAIAVAGLLANILSFWLLHH-------------------------------- 144 (312)
T ss_pred HHHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHHHHHHHHHHHHhc--------------------------------
Confidence 999999999999999998754 34566778888999999988887764
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCccccCCccccCCCCCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041429 215 HPRGEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAIIW 294 (408)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~~~~ 294 (408)
.++.+|.+++++++|++.|+++|+++++++++++
T Consensus 145 ----------------------------------------------~~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~ 178 (312)
T PRK03557 145 ----------------------------------------------GSEEKNLNVRAAALHVLGDLLGSVGAIIAALIII 178 (312)
T ss_pred ----------------------------------------------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1235677899999999999999999999988876
Q ss_pred hccCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCcccHHHHHHHH-HcCcCccceeeeEEEEeeCCeEEEEEE
Q 041429 295 YKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGI-LEMEEVVAIHELHIWAITVGKVLLACH 373 (408)
Q Consensus 295 ~~~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~~~~~~i~~~l-~~~~gV~~v~~l~~~~~~~~~~~~~v~ 373 (408)
+. +|+|+||+++++++++|++.+++++|+++..|||++|++++.+++++.+ ++.|||.+++++|+|+. ++++.+++|
T Consensus 179 ~~-g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~~~~~~~i~~~i~~~~~gV~~vh~l~~~~~-G~~~~v~~h 256 (312)
T PRK03557 179 WT-GWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVSLDIAELKRRLCREIPEVRNVHHVHVWMV-GEKPVMTLH 256 (312)
T ss_pred Hc-CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHhcCCCceeEEEEEEEEe-CCeEEEEEE
Confidence 64 8999999999999999999999999999999999999998899998877 67999999999999998 478899999
Q ss_pred EEeCCCCCHHHHHHHHHHHHHhhCCCceEEEEecC
Q 041429 374 VKIQPEANADLVLNNVIDYIRREYNIIHVTIQIER 408 (408)
Q Consensus 374 v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIqie~ 408 (408)
|.++++.+.+++.+++++++++++++.++|||+||
T Consensus 257 v~v~~~~~~~~i~~~i~~~l~~~~~i~~vtIh~e~ 291 (312)
T PRK03557 257 VQVIPPHDHDALLDRIQDYLMHHYQIEHATIQMEY 291 (312)
T ss_pred EEECCCCCHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 99999989999999999999999999999999996
No 4
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-50 Score=381.87 Aligned_cols=311 Identities=27% Similarity=0.493 Sum_probs=260.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHH
Q 041429 53 ASMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSM 132 (408)
Q Consensus 53 ~~~~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~ 132 (408)
+.+|+++.++++|+.++.+|++.|.++||++|++|++||++|+.+.+++|++.++++||+++.|||||.|+|.+++|+++
T Consensus 32 ~~sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~ 111 (354)
T KOG1484|consen 32 KDSRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNG 111 (354)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHhhccCCCCCCC--CCCCCCCCCCCCCCCccccC
Q 041429 133 QLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGH--GHDHHDHGMGHRHGSRITTD 210 (408)
Q Consensus 133 ~~L~~~~~~i~~ea~~~l~~~~~~~~~~~~~~~~~~~l~vn~i~~~~~~~~~~h~~~~--~~~~~~~~~~~~~~~~~~~~ 210 (408)
+++.+++++++.|+++|+++| ++..++..++++..++++|+++.+.+.+.|+|.||- +++|-+|...+.|+
T Consensus 112 vflvl~a~fi~~Es~eRl~~p-pei~t~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~~~h~~~~~~~------ 184 (354)
T KOG1484|consen 112 VFLVLIAFFIFSESVERLFDP-PEIHTNRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSHSGHLALLFHS------ 184 (354)
T ss_pred HHHHHHHHHHhHHHHHHhcCc-hhcCCceeEEeeHHHHHHHHHHHHHhccccccccCCCCccccccchhccccc------
Confidence 999999999999999999987 577888899999999999999999998654333331 11111111111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccCccccCCccccCCCCCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 041429 211 HHEEHPRGEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGG 290 (408)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~ 290 (408)
+.++++..++.+. ...-..+.++...++|+++|+++|++++++.
T Consensus 185 --------------~~~~~~~~~~~~~----------------------~i~g~~~~~m~gifLHVLaDtlgSvGviist 228 (354)
T KOG1484|consen 185 --------------LLGVWDLHHHAHG----------------------HIHGHSHENMPGIFLHVLADTLGSVGVIIST 228 (354)
T ss_pred --------------ccccccccccccc----------------------ccCCcccccccchhHHHHHHHhcchHHHHHH
Confidence 1111111111000 0111344556689999999999999999999
Q ss_pred HHHHhccCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCccc--HHHHHHHHHcCcCccceeeeEEEEeeCCeE
Q 041429 291 AIIWYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREID--ATKLEKGILEMEEVVAIHELHIWAITVGKV 368 (408)
Q Consensus 291 ~~~~~~~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~~~--~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~ 368 (408)
.++.++ +|.++||+|+++|+++|+.+.+|++|++..+|||++||+.. .++..+.+.+.+||.++++.|+|+++.|.+
T Consensus 229 ~Li~~~-gw~~aDpicsllIailIf~sv~PL~k~s~~iLLq~tPp~~~~~l~~cl~~Is~~~gV~~v~~~hFWt~~~g~~ 307 (354)
T KOG1484|consen 229 LLIKLF-GWMIADPICSLLIAILIFLSVLPLLKYSGKILLQRTPPHLENSLKQCLRQISTLDGVTSVQNPHFWTLESGSV 307 (354)
T ss_pred HHHHhc-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhHHHHHHHHhhccccceeeccCceeeccCCce
Confidence 998875 99999999999999999999999999999999999999864 234445566699999999999999999999
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEEecC
Q 041429 369 LLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQIER 408 (408)
Q Consensus 369 ~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIqie~ 408 (408)
+.++|++|.+++|.+.+++++.+++ +..||++.|||+|+
T Consensus 308 vGtlhl~V~~dade~~vl~~V~~~~-~~~gV~~ltvQv~~ 346 (354)
T KOG1484|consen 308 VGTLHLQVSSDADEQSVLAHVTRKL-EDAGVKDLTVQVEK 346 (354)
T ss_pred EEEEEEEEecCcchhHHHHHHHHHH-HhcceeEEEEEEec
Confidence 9999999999999999999999988 47799999999985
No 5
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-51 Score=398.92 Aligned_cols=346 Identities=28% Similarity=0.488 Sum_probs=270.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHH
Q 041429 55 MRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQL 134 (408)
Q Consensus 55 ~~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~~ 134 (408)
+.+++..+++.++|+++|++.|+.++|+||++|++|||.|+++.++++++.+.+++.++.++||||.|.|++++|++++|
T Consensus 8 ~~rli~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~if 87 (404)
T KOG1483|consen 8 SLRLISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIF 87 (404)
T ss_pred ccceeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHH
Confidence 36788899999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCC--CccccCCC
Q 041429 135 IWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGHGHDHHDHGMGHRHG--SRITTDHH 212 (408)
Q Consensus 135 L~~~~~~i~~ea~~~l~~~~~~~~~~~~~~~~~~~l~vn~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~~--~~~~~~~~ 212 (408)
+..+++.++.||++|+++|....+|..++.++++|++.|.+.++.+. + |||+|+|+-|.|+||.-.+ .....+..
T Consensus 88 l~alc~~I~~EA~~R~I~p~~i~~P~~vL~vgi~gLi~Nvlg~~lfh-d--hg~~h~~~~H~h~hg~~~~~~~~~~~~~~ 164 (404)
T KOG1483|consen 88 LTALCVSILIEAIERIIEPHHIENPILVLYVGIIGLISNVLGLFLFH-D--HGHDHGHGVHGHSHGGMKGFIGLNLTHLH 164 (404)
T ss_pred HHHHHHHHHHHHHHhhcCCccccCceeeehhhHHHHHHHHHHhheee-c--cCcccCCcCCCCCCCccccchhhhccCCc
Confidence 99999999999999999999899999999999999999999887774 2 2333333323333333333 11111111
Q ss_pred -CCCCCCC-CCCCCCCCCCCCC-------CCCccCccccCCccccCCCCCC-CCCCcccccccchhhHHHHHHHHHHHHH
Q 041429 213 -EEHPRGE-HHDHCDEENPKTG-------HHHFLDKHHRTGEVLAEPLVDK-PKFGPEQKKQQNINVRGAYLHVLGDSIQ 282 (408)
Q Consensus 213 -~~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~l~a~~~h~~~D~l~ 282 (408)
...+. + .+....+.++... .+++.+. ..+........... ..+....++.++.|+++.++|++.|+++
T Consensus 165 ~~~~G~-~t~~~~~d~~~~~~p~~~l~~~~~~N~~~-~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg 242 (404)
T KOG1483|consen 165 SHAIGC-NTLAKQLDTPLGPGPNAHLSGVMSQNLDG-SSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALG 242 (404)
T ss_pred hhccCC-cchhhccccCCCCcchhhhccccccCCCC-CCCccccCCcccccchhhhhhhhhhccccccceeeeeeccccc
Confidence 00000 0 0000000000000 0011000 00000000000000 0011122557899999999999999999
Q ss_pred HHHHHHHHHHHHhccCch---hhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCcccHHHHHHHHHcCcCccceeeeE
Q 041429 283 SIGVMIGGAIIWYKPEWK---IVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELH 359 (408)
Q Consensus 283 sv~vli~~~~~~~~~~~~---~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~~~~~~i~~~l~~~~gV~~v~~l~ 359 (408)
+++|+++++++|+. +|. |+||+.+++++++|+.++||++|+++.+|||.+|..++.+++++.+.++|||.+||++|
T Consensus 243 ~I~Vi~~A~~v~~t-~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l~~~~gv~~vh~lh 321 (404)
T KOG1483|consen 243 SIIVIVSALFVYKT-EYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDLLTVPGVISVHDLH 321 (404)
T ss_pred ceEEEEEEEEEEec-ceehhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHHHHhcCcceeeeeeee
Confidence 99999999999885 553 78999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEEec
Q 041429 360 IWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQIE 407 (408)
Q Consensus 360 ~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIqie 407 (408)
+|++++.++.+++||+++...+.-+++++||+++ +++||..+|||||
T Consensus 322 vWqL~~~r~IAt~Hi~~~~p~~~~~~a~~ir~~f-h~~GIhs~TiqPe 368 (404)
T KOG1483|consen 322 VWQLAGSRIIATIHIQIQNPKEYMKIAEKIRSYF-HDQGIHSTTIQPE 368 (404)
T ss_pred eeeeccceEEEEEEEEecCcHHHHHHHHHHHHHH-HhcCCcceeeccc
Confidence 9999999999999999999999999999999998 6889999999998
No 6
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00 E-value=8.9e-49 Score=383.41 Aligned_cols=275 Identities=19% Similarity=0.267 Sum_probs=256.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHH
Q 041429 54 SMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQ 133 (408)
Q Consensus 54 ~~~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~ 133 (408)
.+|.+++++++|++++++|+++|+++||++|+||++|++.|+++.++++++.++++||||++|||||+|+|+++++++++
T Consensus 9 ~~~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~ 88 (299)
T PRK09509 9 VSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQSM 88 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccccCCCC
Q 041429 134 LIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGHGHDHHDHGMGHRHGSRITTDHHE 213 (408)
Q Consensus 134 ~L~~~~~~i~~ea~~~l~~~~~~~~~~~~~~~~~~~l~vn~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (408)
++++.+++++++|++++++|.+..++.++++++++++++|++++++.++
T Consensus 89 ~l~~~~~~~~~esi~~l~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~------------------------------- 137 (299)
T PRK09509 89 FISGSALFLFLTGIQHLISPTPMNDPGVGIIVTLVALICTLILVTFQRW------------------------------- 137 (299)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH-------------------------------
Confidence 9999999999999999999877666777788899999999998877764
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCccccCCccccCCCCCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041429 214 EHPRGEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAII 293 (408)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~~~ 293 (408)
..++.+|++++++++|++.|++.|++++++.++.
T Consensus 138 ----------------------------------------------~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~ 171 (299)
T PRK09509 138 ----------------------------------------------VVRKTQSQAVRADMLHYQSDVMMNGAILLALGLS 171 (299)
T ss_pred ----------------------------------------------HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999888777
Q ss_pred HhccCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCcccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEE
Q 041429 294 WYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACH 373 (408)
Q Consensus 294 ~~~~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~ 373 (408)
++ +|+|+||++++++++++++.+++++|++...|+|++||++..+++++.++++|||.+++++|+|+. ++++.+++|
T Consensus 172 ~~--g~~~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~~~~~~~~~I~~~i~~~~~v~~v~~l~~~~~-G~~~~v~v~ 248 (299)
T PRK09509 172 WY--GWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQS-GPTRFIQLH 248 (299)
T ss_pred Hh--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCcCceeeeeEee-CCeEEEEEE
Confidence 65 899999999999999999999999999999999999999999999999999999999999999986 566789999
Q ss_pred EEeCCCC---CHHHHHHHHHHHHHhhCCCceEEEEecC
Q 041429 374 VKIQPEA---NADLVLNNVIDYIRREYNIIHVTIQIER 408 (408)
Q Consensus 374 v~v~~~~---~~~~i~~~i~~~l~~~~~v~~vtIqie~ 408 (408)
|.++++. +++++.++++++++++++..+++||+||
T Consensus 249 i~v~~~~~~~e~h~i~~~ie~~l~~~~~~~~v~ihveP 286 (299)
T PRK09509 249 LEMEDNLPLVQAHMIADQVEQALLRRFPGSDVIIHQDP 286 (299)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 9999884 7899999999999999887889999997
No 7
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-48 Score=380.06 Aligned_cols=278 Identities=25% Similarity=0.383 Sum_probs=265.3
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHH
Q 041429 51 RSASMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALV 130 (408)
Q Consensus 51 ~~~~~~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~ 130 (408)
.+..+|..++++++|++++++|+++|+++||.||+||++|++.|+++.++.++++++++||||++|||||+|+|++++++
T Consensus 8 ~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~sl~ 87 (304)
T COG0053 8 LKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLASLI 87 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccccC
Q 041429 131 SMQLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGHGHDHHDHGMGHRHGSRITTD 210 (408)
Q Consensus 131 ~~~~L~~~~~~i~~ea~~~l~~~~~~~~~~~~~~~~~~~l~vn~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 210 (408)
.++++++.++.++++++.+++.|.+..++.+++.++++++++|..++.+.++
T Consensus 88 ~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~---------------------------- 139 (304)
T COG0053 88 VSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRR---------------------------- 139 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Confidence 9999999999999999999999888888899999999999999999999985
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccCccccCCccccCCCCCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 041429 211 HHEEHPRGEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGG 290 (408)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~ 290 (408)
.+++.++..+.++++|.+.|+++|++++++.
T Consensus 140 -------------------------------------------------~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl 170 (304)
T COG0053 140 -------------------------------------------------VGKKTNSQALIADALHHRSDVLTSLAVLVGL 170 (304)
T ss_pred -------------------------------------------------HHHHhCCHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999
Q ss_pred HHHHhccCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCcccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEE
Q 041429 291 AIIWYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLL 370 (408)
Q Consensus 291 ~~~~~~~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~ 370 (408)
+..++ ||+|+||+++++|+++|+++++.++|++...|||+.+|+++.+++++.+.+.|||.++++++.++ .++++++
T Consensus 171 ~~~~~--g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i~~~~~V~~v~~lr~R~-~G~~~~i 247 (304)
T COG0053 171 LGSLL--GWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILSVPGVKGVHDLRTRK-SGSRIFI 247 (304)
T ss_pred HHHHh--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHhcCCcceeeecceeee-eCCeEEE
Confidence 95444 89999999999999999999999999999999999999999999999999999999999999995 5789999
Q ss_pred EEEEEeCCC---CCHHHHHHHHHHHHHhhCC-CceEEEEecC
Q 041429 371 ACHVKIQPE---ANADLVLNNVIDYIRREYN-IIHVTIQIER 408 (408)
Q Consensus 371 ~v~v~v~~~---~~~~~i~~~i~~~l~~~~~-v~~vtIqie~ 408 (408)
++|++++++ .++++|.+++++++++.++ +.+++||+||
T Consensus 248 d~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP 289 (304)
T COG0053 248 DVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEP 289 (304)
T ss_pred EEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 999999999 4899999999999999997 9999999997
No 8
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=100.00 E-value=3.3e-46 Score=359.42 Aligned_cols=262 Identities=39% Similarity=0.654 Sum_probs=245.3
Q ss_pred HHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041429 68 FMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQLIWLLAGILVYEAI 147 (408)
Q Consensus 68 ~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~~L~~~~~~i~~ea~ 147 (408)
++++|+++|+++||.+|+|||+|++.|+++.++++++.++++||||++|||||+|+|+++++++++++++.+++++++++
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si 81 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAI 81 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcccchhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC
Q 041429 148 VRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGHGHDHHDHGMGHRHGSRITTDHHEEHPRGEHHDHCDEE 227 (408)
Q Consensus 148 ~~l~~~~~~~~~~~~~~~~~~~l~vn~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (408)
.++++|.++.+..++++++++++++|++++++.++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------------------------------- 116 (268)
T TIGR01297 82 ERLINPEPEIDGGTMLIVAIVGLIVNLILALYLHR--------------------------------------------- 116 (268)
T ss_pred HHHhCCCCcccchhHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 99998876677788888999999999999988875
Q ss_pred CCCCCCCCccCccccCCccccCCCCCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHH
Q 041429 228 NPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLICT 307 (408)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~~~~~~~~~~~~Dpv~s 307 (408)
.+++.+|+++++++.|+++|++++++++++..+.++ +|+|+||+++
T Consensus 117 --------------------------------~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~~--~~~~~D~l~~ 162 (268)
T TIGR01297 117 --------------------------------VGHRLGSLALRAAALHVLSDALSSVGVLIGALLIYF--GWHWADPIAA 162 (268)
T ss_pred --------------------------------hCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHH
Confidence 234567999999999999999999999999998876 4899999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhccCCCcccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCC---CHHH
Q 041429 308 LIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEA---NADL 384 (408)
Q Consensus 308 i~is~~il~~~~~l~~~s~~~Ll~~~p~~~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~---~~~~ 384 (408)
+++++++++.+++++|++...|+|.+|+++..+++++.+++.|||.+++++|+|+.+++++.+++||+++++. ++++
T Consensus 163 i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~~~ah~ 242 (268)
T TIGR01297 163 LLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHD 242 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHhcCCCcccceEeEEEEcCCCCEEEEEEEEECCCCChhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999876699999999999994 6799
Q ss_pred HHHHHHHHHHhh-CCCceEEEEecC
Q 041429 385 VLNNVIDYIRRE-YNIIHVTIQIER 408 (408)
Q Consensus 385 i~~~i~~~l~~~-~~v~~vtIqie~ 408 (408)
+.++++++++++ +++.+||||+||
T Consensus 243 i~~~i~~~i~~~~~~v~~v~ih~ep 267 (268)
T TIGR01297 243 IALEIEREILKRHPGIEHVTIQVEP 267 (268)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 999999999876 589999999997
No 9
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=100.00 E-value=1.1e-44 Score=351.25 Aligned_cols=275 Identities=26% Similarity=0.483 Sum_probs=240.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHH
Q 041429 58 LLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQLIWL 137 (408)
Q Consensus 58 l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~~L~~ 137 (408)
++++++++++++++|+++|+++||.++++|++|++.|+++.++++++.+.++|||+++|||||+|+|++++|+.++++++
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCC
Q 041429 138 LAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGHGHDHHDHGMGHRHGSRITTDHHEEHPR 217 (408)
Q Consensus 138 ~~~~i~~ea~~~l~~~~~~~~~~~~~~~~~~~l~vn~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (408)
.+++++++++++++++.+...+.+++.++++++++|+++++++++..
T Consensus 81 ~~~~~~~~si~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~--------------------------------- 127 (284)
T PF01545_consen 81 LGLFLIVESIQRLISPHEPSPPGIVLIVALVSIIVNLLLAWYLRRVG--------------------------------- 127 (284)
T ss_dssp HHHHHHHHHTTTSSSSSSSSTTTS-THHHHHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred hHHHHHHHHhhcccccccchhhhhhhhhhhhhhhHHHHHHHHHhhcc---------------------------------
Confidence 99999999999999987666666666679999999999999998510
Q ss_pred CCCCCCCCCCCCCCCCCCccCccccCCccccCCCCCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041429 218 GEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAIIWYKP 297 (408)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~~~~~~~ 297 (408)
...+.+++++++.+.|.+.|.+.+++++++.++.++.
T Consensus 128 ------------------------------------------~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~- 164 (284)
T PF01545_consen 128 ------------------------------------------KRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLG- 164 (284)
T ss_dssp ------------------------------------------HHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT-
T ss_pred ------------------------------------------cccccccccchhhhhhcccchhHHHHHHHHHHHHHHH-
Confidence 0112348999999999999999999999999888775
Q ss_pred Cch-hhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCcccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEe
Q 041429 298 EWK-IVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKI 376 (408)
Q Consensus 298 ~~~-~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v 376 (408)
+|. |+||++++++++++++.+++++|++...|+|++|+++..+++++.+++.|+|.+++++|+|+.+.+++.+++++++
T Consensus 165 ~~~~~~D~v~~l~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v 244 (284)
T PF01545_consen 165 PWFWYADPVASLLIALFILYSGYPLIKESIRILLDASPDPELVEKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQV 244 (284)
T ss_dssp -STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEE
T ss_pred hcccccchhhhhHHHHHHhhhhhhchhhhhcccccccccccchhHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEe
Confidence 455 5999999999999999999999999999999999999999999999999999999999999997669999999999
Q ss_pred CCCC---CHHHHHHHHHHHHHhhC-CCceEEEEecC
Q 041429 377 QPEA---NADLVLNNVIDYIRREY-NIIHVTIQIER 408 (408)
Q Consensus 377 ~~~~---~~~~i~~~i~~~l~~~~-~v~~vtIqie~ 408 (408)
+++. +++++.+++++++++++ ++.+||||+||
T Consensus 245 ~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p 280 (284)
T PF01545_consen 245 DPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEP 280 (284)
T ss_dssp TTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEe
Confidence 9995 78999999999999998 89999999986
No 10
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-37 Score=300.11 Aligned_cols=274 Identities=15% Similarity=0.163 Sum_probs=239.1
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHH
Q 041429 51 RSASMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALV 130 (408)
Q Consensus 51 ~~~~~~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~ 130 (408)
.+.+.+..|+++++|++++++|+++|+.+||+|++||++|++.|+++.++.+++++.++||++.+||||++|+|+++.++
T Consensus 110 ~~~~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~ 189 (412)
T KOG1485|consen 110 KNAERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIA 189 (412)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHHH
Confidence 34556888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCc-------cc----chhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCC
Q 041429 131 SMQLIWLLAGILVYEAIVRLINETS-------EV----NGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGHGHDHHDHGM 199 (408)
Q Consensus 131 ~~~~L~~~~~~i~~ea~~~l~~~~~-------~~----~~~~~~~~~~~~l~vn~i~~~~~~~~~~h~~~~~~~~~~~~~ 199 (408)
++.+|.+.++.++++++.++..|.. +. ...|+++++++...+.+..+++++.
T Consensus 190 ~S~iMa~agv~ii~sSl~~i~~~~~~~~~~~~~q~~~~~a~~~i~i~is~~~vk~~l~~~c~~----------------- 252 (412)
T KOG1485|consen 190 VSVIMAMAGVQIIWSSLRLIVGPHAIGHHHNPSQLIFINALWLIAIMISAKEVKLRLTLYCAI----------------- 252 (412)
T ss_pred HHHHHHHHHHHHHHHhHHhhhcccccccccCchhhcccchhhhheehhhHHHHHHHHHHHHHH-----------------
Confidence 9999999999999999998876211 11 1225666677777777777777763
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCccccCCccccCCCCCCCCCCcccccccchhhHHHHHHHHHH
Q 041429 200 GHRHGSRITTDHHEEHPRGEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGD 279 (408)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D 279 (408)
+.+|..+++.++|+|.|
T Consensus 253 ---------------------------------------------------------------~~ns~iv~a~A~dHr~D 269 (412)
T KOG1485|consen 253 ---------------------------------------------------------------KTNSNIVRANAWDHRND 269 (412)
T ss_pred ---------------------------------------------------------------hcCcHHHHHHHHHHHhH
Confidence 34668899999999999
Q ss_pred HHHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCcccHHHHHHHHHc-CcCccceeee
Q 041429 280 SIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILE-MEEVVAIHEL 358 (408)
Q Consensus 280 ~l~sv~vli~~~~~~~~~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~~~~~~i~~~l~~-~~gV~~v~~l 358 (408)
++++..+++|+.+.+++ |+|+||++++++|.+|+++|++-..+++..|+|++.|++..+++.....+ -+.++.+..+
T Consensus 270 ~lTn~vaLva~~la~~~--~~~lDP~gailVS~~ii~t~~~t~~~~i~~Lvg~~a~pe~L~~~~~~~l~~~~~i~~idtv 347 (412)
T KOG1485|consen 270 VLTNSVALVAASLAYYY--NYWLDPIGAILVSTYIIYTGGRTGLENIKELVGRSAPPEYLEIITYLILQHGKLIKHIDTV 347 (412)
T ss_pred HHHHHHHHHHHHHHHhh--hhcccchhhhhhheehhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCccccceee
Confidence 99999999999999885 79999999999999999999999999999999997666677776666655 4589999999
Q ss_pred EEEEeeCCeEEEEEEEEeCCCC---CHHHHHHHHHHHHHhhCCCceEEEEec
Q 041429 359 HIWAITVGKVLLACHVKIQPEA---NADLVLNNVIDYIRREYNIIHVTIQIE 407 (408)
Q Consensus 359 ~~~~~~~~~~~~~v~v~v~~~~---~~~~i~~~i~~~l~~~~~v~~vtIqie 407 (408)
+.+.. +..+.++++++++++. .++++-+.+++.|...-.+.++.||+|
T Consensus 348 ~~y~~-g~~~~Vev~ivl~~~~~l~~ah~i~E~lq~~ie~l~ever~fvh~d 398 (412)
T KOG1485|consen 348 RAYTF-GSHYFVEVHIVLDEDLSLSVAHDIGETLQKKIELLPEVERAFVHID 398 (412)
T ss_pred eeecc-cceEEEEEeeecCCCCccHHHHHHHHHHHHHHhhcchheeeeeecC
Confidence 99986 5778999999999994 689999999999977657999999876
No 11
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.4e-25 Score=206.61 Aligned_cols=275 Identities=17% Similarity=0.189 Sum_probs=231.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhc-CCCCCCCccCchhHHHHHHHHHH
Q 041429 54 SMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAG-WESNPRQSYGFFRVEILGALVSM 132 (408)
Q Consensus 54 ~~~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~-~~~~~~~p~G~~R~E~l~~l~~~ 132 (408)
+++.+.++++..++++.+.+++|+++||.+++-||++++.|+...+++|+..|+-. +|.+.|||||+.-+|++.-.+++
T Consensus 18 eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~ing 97 (314)
T COG3965 18 EQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLAING 97 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhhhcc
Confidence 34778899999999999999999999999999999999999999999999998877 56666999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccccCCC
Q 041429 133 QLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGHGHDHHDHGMGHRHGSRITTDHH 212 (408)
Q Consensus 133 ~~L~~~~~~i~~ea~~~l~~~~~~~~~~~~~~~~~~~l~vn~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (408)
.+|++++.+.++.|+..++++..+..+.+++++++++...+..++++.+|
T Consensus 98 ~ll~ll~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r------------------------------ 147 (314)
T COG3965 98 TLLALLCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRR------------------------------ 147 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHh------------------------------
Confidence 99999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCccccCCccccCCCCCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041429 213 EEHPRGEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAI 292 (408)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~~ 292 (408)
..|+.+|+.+.++...++.|++-|.+++++.++
T Consensus 148 -----------------------------------------------~nrr~~s~lIald~kqW~Mst~lS~al~VaF~~ 180 (314)
T COG3965 148 -----------------------------------------------LNRRLKSPLIALDTKQWLMSTCLSAALFVAFAA 180 (314)
T ss_pred -----------------------------------------------hhccCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 335678888999999999999999999999998
Q ss_pred HHhccC------chhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCcccHHHHHHHHHcCcCccceeeeEEEEeeCC
Q 041429 293 IWYKPE------WKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVG 366 (408)
Q Consensus 293 ~~~~~~------~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~ 366 (408)
.|...+ .+|+||+.-.+.+++++...++.++.+.++.++.+|+ +..+.++....+...-.+..+.+.+-..-|
T Consensus 181 a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmtP~-el~q~ies~~~~~v~k~~f~~~~~yvArVG 259 (314)
T COG3965 181 AWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGTVKSALREILLMTPN-ELQQSIESHAHEIVEKYGFPSYHVYVARVG 259 (314)
T ss_pred HHHhccCchhhhhcccCHHHHHHHHHheeeccHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhcCchHHHHHHHhc
Confidence 887432 2489999999999999999999999999999999998 455666655544333344445554433345
Q ss_pred e-EEEEEEEEeCCCC------CHHHHHHHHHHHHHhhCCCceEEEEe
Q 041429 367 K-VLLACHVKIQPEA------NADLVLNNVIDYIRREYNIIHVTIQI 406 (408)
Q Consensus 367 ~-~~~~v~v~v~~~~------~~~~i~~~i~~~l~~~~~v~~vtIqi 406 (408)
+ ..+++|..+|++. +-++|.+++.+.+...---..+||-+
T Consensus 260 r~l~IEi~fiip~~~~ar~Ved~d~Irdei~~slg~~g~~rwltvsf 306 (314)
T COG3965 260 RGLFIEIHFIIPRESDARNVEDWDDIRDEIGQSLGSLGYERWLTVSF 306 (314)
T ss_pred cceEEEEEEEeCCccCCccchhHHHHHHHHHHHhhcCCcCceEEEEE
Confidence 5 7899999998873 56677777777775443245566654
No 12
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=99.79 E-value=1.7e-18 Score=166.53 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHH
Q 041429 56 RKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQLI 135 (408)
Q Consensus 56 ~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~~L 135 (408)
|+..+++++|++-+.+|+.+++.+||-+|+|+++|+++|.+++++.+++++.+.+.||.-|||||.++.++..|++++.+
T Consensus 207 rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLISgvGI 286 (503)
T KOG2802|consen 207 RVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLISGVGI 286 (503)
T ss_pred ceehhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHhccce
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred HHHHHH-HHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHhh
Q 041429 136 WLLAGI-LVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLG 181 (408)
Q Consensus 136 ~~~~~~-i~~ea~~~l~~~~~~~~~~~~~~~~~~~l~vn~i~~~~~~ 181 (408)
+.++.. -+|..+..|++|+|.++..|+..+...+++......+...
T Consensus 287 fc~G~GlSiyhGv~gLlhpePi~~l~~ay~il~gSl~~eGasllvAi 333 (503)
T KOG2802|consen 287 FCMGCGLSIYHGVMGLLHPEPIESLLWAYCILAGSLVSEGASLLVAI 333 (503)
T ss_pred eeecccchhhhccccccCCCCCcchHHHHHHHhhHHHhcchHHHHHH
Confidence 666554 5899999999999988888888777777777666555443
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.09 E-value=3.7e-05 Score=75.65 Aligned_cols=92 Identities=24% Similarity=0.209 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHH
Q 041429 55 MRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQL 134 (408)
Q Consensus 55 ~~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~~ 134 (408)
-...+++++++..+...+.-.|--+||.+|.||+.|..+|+++.+..++++-... +||..++++++++.+++
T Consensus 120 ~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~~~~--------~g~~~lD~i~a~~I~~~ 191 (304)
T COG0053 120 LGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLGSL--------LGWPWLDPLAALLISLY 191 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------hCcHHHHHHHHHHHHHH
Confidence 3556778888889999999999999999999999999999999999999998444 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 041429 135 IWLLAGILVYEAIVRLINET 154 (408)
Q Consensus 135 L~~~~~~i~~ea~~~l~~~~ 154 (408)
++-.++.++++++..|++..
T Consensus 192 Il~~~~~~~~~s~~~L~d~~ 211 (304)
T COG0053 192 ILKTGFRLFKESVNELMDAA 211 (304)
T ss_pred HHHHHHHHHHHHHHHHhCcC
Confidence 99999999999999999833
No 14
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=97.88 E-value=0.00013 Score=70.11 Aligned_cols=92 Identities=22% Similarity=0.203 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHH
Q 041429 56 RKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQLI 135 (408)
Q Consensus 56 ~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~~L 135 (408)
....+++++|+++...+.-.|...+|.++.+|+.|.+.|+++.+..+++..++. ||+.++|++++++.++++
T Consensus 98 ~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~--------~~~~~~D~l~~i~i~~~i 169 (268)
T TIGR01297 98 IVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIY--------FGWHWADPIAALLISLLI 169 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHH
Confidence 445667788888888888888999999999999999999999999999988875 668899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCc
Q 041429 136 WLLAGILVYEAIVRLINETS 155 (408)
Q Consensus 136 ~~~~~~i~~ea~~~l~~~~~ 155 (408)
+..++.++++++..|++..+
T Consensus 170 ~~~~~~l~~~~~~~Ll~~~~ 189 (268)
T TIGR01297 170 LYTAFRLLKESINVLLDAAP 189 (268)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999998554
No 15
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=97.86 E-value=0.00016 Score=70.93 Aligned_cols=90 Identities=27% Similarity=0.266 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHH
Q 041429 57 KLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQLIW 136 (408)
Q Consensus 57 ~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~~L~ 136 (408)
...+++++|.++...+...+...+|.++.+|+.|.+.|+++.+..++++..+. +||..++++++++.+++++
T Consensus 120 ~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~--------~g~~~~D~i~aiii~~~il 191 (299)
T PRK09509 120 VTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW--------YGWHRADALFALGIGIYIL 191 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hChHHHHHHHHHHHHHHHH
Confidence 34566777777777777778889999999999999999999999888887764 5888999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 041429 137 LLAGILVYEAIVRLINET 154 (408)
Q Consensus 137 ~~~~~i~~ea~~~l~~~~ 154 (408)
..++.++++++..|++..
T Consensus 192 ~~~~~i~~~~~~~Ll~~~ 209 (299)
T PRK09509 192 YSALRMGYEAVQSLLDRA 209 (299)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 999999999999999743
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=97.03 E-value=0.0064 Score=60.14 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=61.8
Q ss_pred hhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 041429 76 GIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQLIWLLAGILVYEAIVRLINETS 155 (408)
Q Consensus 76 g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~~L~~~~~~i~~ea~~~l~~~~~ 155 (408)
+-..+|.++.||+.|.+.|+++.+..+++..+... +||..++++++++.+++++..++.++++++..|++..+
T Consensus 145 ~~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~-------~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p 217 (312)
T PRK03557 145 GSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIW-------TGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAP 217 (312)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 33468899999999999999999998888766542 34556999999999999999999999999999997543
No 17
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=95.47 E-value=0.044 Score=55.36 Aligned_cols=90 Identities=20% Similarity=0.217 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHH
Q 041429 56 RKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQLI 135 (408)
Q Consensus 56 ~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~~L 135 (408)
+.+.+++..-...+..-+..+...+|-.++|-|.|-.+|+++..++|++.+++. |.|..++++++++++..+
T Consensus 231 ~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~--------~~~~~lDP~gailVS~~i 302 (412)
T KOG1485|consen 231 WLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAY--------YYNYWLDPIGAILVSTYI 302 (412)
T ss_pred hhheehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------hhhhcccchhhhhhheeh
Confidence 334445555555555667778889999999999999999999999999999997 666889999999999999
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 041429 136 WLLAGILVYEAIVRLINE 153 (408)
Q Consensus 136 ~~~~~~i~~ea~~~l~~~ 153 (408)
+..++....+++..|+..
T Consensus 303 i~t~~~t~~~~i~~Lvg~ 320 (412)
T KOG1485|consen 303 IYTGGRTGLENIKELVGR 320 (412)
T ss_pred hhhhhHHHHHHHHHHhCC
Confidence 999999999999999964
No 18
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=92.31 E-value=7.1 Score=38.00 Aligned_cols=32 Identities=25% Similarity=0.085 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041429 121 FRVEILGALVSMQLIWLLAGILVYEAIVRLIN 152 (408)
Q Consensus 121 ~R~E~l~~l~~~~~L~~~~~~i~~ea~~~l~~ 152 (408)
..+..+.+|..+++|....+-++=|+++.+-+
T Consensus 36 ~~l~~~~~fa~GvlL~~a~~hLLPea~~~~~~ 67 (317)
T PF02535_consen 36 RILSLLNAFAAGVLLGTAFLHLLPEAIEALES 67 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhhccccc
Confidence 35667778887877776767788888887743
No 19
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=91.45 E-value=0.19 Score=48.39 Aligned_cols=90 Identities=23% Similarity=0.216 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc--hHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCch-hHHHHHHHHHHHH
Q 041429 58 LLTAVALCVVFMSIEVFGGIKAN--SLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFF-RVEILGALVSMQL 134 (408)
Q Consensus 58 l~~~l~~~~~~~~~~~~~g~~s~--S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~-R~E~l~~l~~~~~ 134 (408)
..+++++|+.+.....-.+-..+ |.++.+++.|.+.|.+..+..+++.......+ +. -++++++++.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~~-------~~~~~D~v~~l~i~~~ 181 (284)
T PF01545_consen 109 ALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLGP-------WFWYADPVASLLIALF 181 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT--------STS-SSHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHHHHHHHHHHHh-------cccccchhhhhHHHHH
Confidence 44555566655555555444456 99999999999999999988888776655322 22 4899999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 041429 135 IWLLAGILVYEAIVRLINET 154 (408)
Q Consensus 135 L~~~~~~i~~ea~~~l~~~~ 154 (408)
++..+.-++++++..|+...
T Consensus 182 i~~~~~~~~~~~~~~Ll~~~ 201 (284)
T PF01545_consen 182 ILYSGYPLIKESIRILLDAS 201 (284)
T ss_dssp HHHHHHHHHHHHHHHHTT-S
T ss_pred Hhhhhhhchhhhhccccccc
Confidence 99999999999999999754
No 20
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=90.69 E-value=4 Score=39.99 Aligned_cols=73 Identities=12% Similarity=0.286 Sum_probs=62.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc------cCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCc
Q 041429 264 QQNINVRGAYLHVLGDSIQSIGVMIGGAIIWYK------PEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPRE 336 (408)
Q Consensus 264 ~~s~~l~a~~~h~~~D~l~sv~vli~~~~~~~~------~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~ 336 (408)
.+|..+-|++.|.++|+++-...+++..+.... +||+-+.-+++++-+++++..+.-+++|++..+..-.|-+
T Consensus 45 s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~P~~i~ 123 (296)
T COG1230 45 TGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAPPPIH 123 (296)
T ss_pred hccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 478899999999999999988888887776442 2788899999999999999999999999999999766543
No 21
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=84.58 E-value=9.4 Score=30.63 Aligned_cols=67 Identities=12% Similarity=0.217 Sum_probs=49.8
Q ss_pred cHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCC-----CHHHHHHHHHHHHHhhCCCceEEEEe
Q 041429 338 DATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEA-----NADLVLNNVIDYIRREYNIIHVTIQI 406 (408)
Q Consensus 338 ~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~-----~~~~i~~~i~~~l~~~~~v~~vtIqi 406 (408)
...+|++.+.++|++..-..+.+..- ++.=.+.+.|++.++. +...+.+++++.|+...|+. +.|++
T Consensus 5 fP~~Ie~vl~~~~~~~~~y~i~v~~~-~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~-~~V~l 76 (96)
T PF14535_consen 5 FPSQIEEVLREFPEVSPEYQIVVTRE-GGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVR-PEVEL 76 (96)
T ss_dssp -HHHHHHHHCTSTTEEEEEEEEEEEE-TTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS--EEEEE
T ss_pred CHHHHHHHHHhCcCCCCcEEEEEEcC-CCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCce-EEEEE
Confidence 45688999999999987777777753 4555688889988874 35778889999998888875 45443
No 22
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=77.52 E-value=36 Score=33.02 Aligned_cols=68 Identities=22% Similarity=0.183 Sum_probs=40.4
Q ss_pred HHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHH----------------HHHHHHHHHHHHHHHH
Q 041429 83 AILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALV----------------SMQLIWLLAGILVYEA 146 (408)
Q Consensus 83 aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~----------------~~~~L~~~~~~i~~ea 146 (408)
..+|=.+|-+.+.++....+.....++|.... +.+-+.-..++++++ .++++.+.++.++|-+
T Consensus 203 ~~~ai~~Hk~~e~~~~~~~l~~~~~~~~~~~~-~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~lyv~ 281 (317)
T PF02535_consen 203 LFIAIILHKIPEGFALGSILVKAGFSKRKALL-LLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFLYVA 281 (317)
T ss_pred HHHHHHHhHhHHHhhhhhhhhhhccccchhhH-HHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHH
Confidence 45666778888888777776655444443322 334444445554433 3444666666777777
Q ss_pred HHHhh
Q 041429 147 IVRLI 151 (408)
Q Consensus 147 ~~~l~ 151 (408)
+..++
T Consensus 282 ~~ell 286 (317)
T PF02535_consen 282 FVELL 286 (317)
T ss_pred HHHHH
Confidence 77776
No 23
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=76.98 E-value=17 Score=29.44 Aligned_cols=50 Identities=14% Similarity=0.249 Sum_probs=32.3
Q ss_pred eEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhh----CC--CceEEEEec
Q 041429 358 LHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRRE----YN--IIHVTIQIE 407 (408)
Q Consensus 358 l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~----~~--v~~vtIqie 407 (408)
+++..-.++.+.+++++.+..+.+..++.+++|+++.+. -| +..|.|.++
T Consensus 50 v~v~~~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~ 105 (108)
T PF03780_consen 50 VKVEVDEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE 105 (108)
T ss_pred eEEEEccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence 455422166788999999999987666666666655432 23 566666654
No 24
>PLN02601 beta-carotene hydroxylase
Probab=76.62 E-value=19 Score=34.61 Aligned_cols=78 Identities=17% Similarity=-0.038 Sum_probs=41.0
Q ss_pred HHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhH--HHHHHHHHHHHHHHHHHHhh
Q 041429 104 SLWAAGWESNPRQSYGFFRVEILGALVSMQLIWLLAGILVYEAIVRLINETSEVNGFL--MFLVAAFGLVVNIIMALVLG 181 (408)
Q Consensus 104 a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~~L~~~~~~i~~ea~~~l~~~~~~~~~~~--~~~~~~~~l~vn~i~~~~~~ 181 (408)
+.+.++|+ .+|++|= +++..+++.+...++..+|--+..-+++.+.+...+ .+.+.+.+++.....+++..
T Consensus 83 ~~~~~~k~-~er~ty~------~aa~~ss~gi~s~a~~a~y~rf~~~~~~g~~p~~em~~~~al~lgtfvgMEf~Aw~aH 155 (303)
T PLN02601 83 LKKAEKKK-SERFTYL------IAAVMSSFGITSMAIMAVYYRFSWQMKGGEVSMLEMFGTFALSVGAAVGMEFWARWAH 155 (303)
T ss_pred HHHHHHhh-hhhhHHH------HHHHHHhhcHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555543 3344432 345555666656666555555555555432222221 11234455666677778888
Q ss_pred ccCCCCC
Q 041429 182 HDHGHGH 188 (408)
Q Consensus 182 ~~~~h~~ 188 (408)
+|-.||.
T Consensus 156 KYvMHG~ 162 (303)
T PLN02601 156 RALWHDS 162 (303)
T ss_pred HHHHHhc
Confidence 8877664
No 25
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=76.57 E-value=61 Score=29.63 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccchh-HHHHHHHHHHHHHHHHHHHhhc
Q 041429 135 IWLLAGILVYEAIVRLINETSEVNGF-LMFLVAAFGLVVNIIMALVLGH 182 (408)
Q Consensus 135 L~~~~~~i~~ea~~~l~~~~~~~~~~-~~~~~~~~~l~vn~i~~~~~~~ 182 (408)
|++++++.+..++..++.......+. ..++.+++|-+.-.+++.+..|
T Consensus 102 Ll~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr 150 (226)
T COG4858 102 LLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYR 150 (226)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34566666778888888766444433 3444566777777777777775
No 26
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=72.32 E-value=23 Score=31.62 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=46.6
Q ss_pred ccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhC-CCceEEEEec
Q 041429 337 IDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREY-NIIHVTIQIE 407 (408)
Q Consensus 337 ~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~-~v~~vtIqie 407 (408)
...+++.+.+.+++||.+..-+ +.+...++.+.+. .......+|.++|++.+++.+ ++..|.|--+
T Consensus 75 ~~a~~i~~~v~~~~~V~~A~vv----v~~~~a~Vav~~~-~~~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D 141 (177)
T PF09580_consen 75 QLADRIANRVKKVPGVEDATVV----VTDDNAYVAVDLD-FNRFNTKKIKKKVEKAVKSADPRIYNVYVSTD 141 (177)
T ss_pred HHHHHHHHHHhcCCCceEEEEE----EECCEEEEEEEec-ccccchhHHHHHHHHHHHHhCCCccEEEEEcC
Confidence 3446778888888877555444 3466777766666 336788899999999998766 5688877543
No 27
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=69.45 E-value=1.2e+02 Score=29.69 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041429 124 EILGALVSMQLIWLLAGILVYEAIV 148 (408)
Q Consensus 124 E~l~~l~~~~~L~~~~~~i~~ea~~ 148 (408)
+...-.+++++++.+++++++....
T Consensus 87 ~~~le~~S~~lii~lGl~ll~r~~r 111 (279)
T PRK10019 87 EPWLQLISAVIIISTAFWMFWRTWR 111 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555443
No 28
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=67.80 E-value=79 Score=31.58 Aligned_cols=73 Identities=12% Similarity=0.268 Sum_probs=59.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCcc
Q 041429 264 QQNINVRGAYLHVLGDSIQSIGVMIGGAIIWYKP------EWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREI 337 (408)
Q Consensus 264 ~~s~~l~a~~~h~~~D~l~sv~vli~~~~~~~~~------~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~~ 337 (408)
.++..+-+++.|..-|..+..+-+.+..+....+ |+..+..+++..=+++.+..++.+.+|+++-|++- |++
T Consensus 58 snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vflvl~a~fi~~Es~eRl~~p--pei 135 (354)
T KOG1484|consen 58 SNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVFLVLIAFFIFSESVERLFDP--PEI 135 (354)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCc--hhc
Confidence 4677889999999999999998888888765531 44567778888888999999999999999999985 444
Q ss_pred c
Q 041429 338 D 338 (408)
Q Consensus 338 ~ 338 (408)
.
T Consensus 136 ~ 136 (354)
T KOG1484|consen 136 H 136 (354)
T ss_pred C
Confidence 3
No 29
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=67.18 E-value=34 Score=38.59 Aligned_cols=67 Identities=13% Similarity=0.178 Sum_probs=42.0
Q ss_pred HHHHHHHHcCcCccceeeeEEEEeeC----CeEEEEEEEEeCCC---C---CHHHHHHHHHHHHHhhCCCceEEEEe
Q 041429 340 TKLEKGILEMEEVVAIHELHIWAITV----GKVLLACHVKIQPE---A---NADLVLNNVIDYIRREYNIIHVTIQI 406 (408)
Q Consensus 340 ~~i~~~l~~~~gV~~v~~l~~~~~~~----~~~~~~v~v~v~~~---~---~~~~i~~~i~~~l~~~~~v~~vtIqi 406 (408)
+++++.++++|+|.+|-.=--+.-++ +-...+-.|.+.|. . ..+++++++++.+++..|+.....||
T Consensus 580 ~~~e~~ik~~PeV~~V~~k~GrAe~~tD~~~~n~~et~I~Lkp~~eW~~~~t~~~lie~l~~~~~~lpG~~~~~tqP 656 (1027)
T COG3696 580 QAIERAIKKFPEVERVFGKTGRAETATDPAPLNMIETFIELKPQEEWKDKKTRDELIEELRKTLEQLPGLANSFTQP 656 (1027)
T ss_pred HHHHHHHhcCcchheeeeccccCCCCCCCCCcccceeeEEecchhhCCCcccHHHHHHHHHHHHHhCCCcccccccc
Confidence 35677778888886665433321111 12456777888655 2 37889999999997666765544443
No 30
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=62.36 E-value=86 Score=34.86 Aligned_cols=56 Identities=18% Similarity=0.129 Sum_probs=28.3
Q ss_pred CccCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHh
Q 041429 116 QSYGFF--RVEILGALVSMQLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVL 180 (408)
Q Consensus 116 ~p~G~~--R~E~l~~l~~~~~L~~~~~~i~~ea~~~l~~~~~~~~~~~~~~~~~~~l~vn~i~~~~~ 180 (408)
.|||+. +=|+..+++..+++.-.++.+ -++.. .-+.+.+.+...-+.+|+.+++.-
T Consensus 535 ~~F~~~~~ngEPt~aLlLT~~Ice~gILi--gslD~-------iApilsmFFLMCY~fVNLaCavqt 592 (1075)
T KOG2082|consen 535 APFGHGKANGEPTWALLLTAIICECGILI--GSLDL-------IAPILSMFFLMCYLFVNLACAVQT 592 (1075)
T ss_pred hhhccccCCCCccHHHHHHHHHHHhhhee--echhH-------HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456655 347777776655554443322 22211 122333444555566777766644
No 31
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=62.17 E-value=36 Score=25.46 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=29.7
Q ss_pred eeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEE
Q 041429 355 IHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTI 404 (408)
Q Consensus 355 v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtI 404 (408)
++++.+ .++++.+++.+..+.......+.+++++.+....|+..|+|
T Consensus 26 V~~i~i---~~~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 26 VRDISI---EGGKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEE---CTCEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred eeEEEE---ECCEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 455544 56775554444333335788899999999985558888875
No 32
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=59.30 E-value=31 Score=27.29 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchhhhHH---HHHHHHHHHHHhHHHHHH
Q 041429 274 LHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLI---CTLIFSVIVLGTTFNMLR 323 (408)
Q Consensus 274 ~h~~~D~l~sv~vli~~~~~~~~~~~~~~Dpv---~si~is~~il~~~~~l~~ 323 (408)
+|-..|.+-+..-+++.++-++. +|+ +||+ +-++.+..++..+++.+|
T Consensus 32 v~Rd~D~~fs~vgLl~g~IL~~~-gwR-ldp~ll~~Q~l~~~~~i~f~~e~ir 82 (84)
T PF07444_consen 32 VSRDYDIFFSSVGLLYGLILWFQ-GWR-LDPILLFGQMLLVGLLIFFGWETIR 82 (84)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHH-hhc-ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556777777666776666664 665 6999 666777777777776554
No 33
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=57.99 E-value=46 Score=33.81 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=60.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh------ccCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccC
Q 041429 263 KQQNINVRGAYLHVLGDSIQSIGVMIGGAIIWY------KPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMEST 333 (408)
Q Consensus 263 ~~~s~~l~a~~~h~~~D~l~sv~vli~~~~~~~------~~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~ 333 (408)
...+..|-++..|+++|++.=++.+++.=.... .+||.-++-+++++-+++.......+++|+....+...
T Consensus 31 v~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~alc~~I~~EA~~R~I~p~ 107 (404)
T KOG1483|consen 31 VTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLTALCVSILIEAIERIIEPH 107 (404)
T ss_pred ccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 468889999999999999988877777544433 23899999999999999999999999999999988754
No 34
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=54.16 E-value=2.3e+02 Score=27.95 Aligned_cols=31 Identities=3% Similarity=-0.009 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHhhcc
Q 041429 302 VDLICTLIFSVIVLGTTFNMLRNILEVLMES 332 (408)
Q Consensus 302 ~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~ 332 (408)
+=.+.++-++..+..++.-++--+.+.+.-+
T Consensus 236 il~VlamS~GtalTvs~lA~~av~ak~~a~~ 266 (303)
T COG2215 236 ILSVLAMSIGTALTVSALALLAVTAKNTAVR 266 (303)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666655555555443
No 35
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=50.38 E-value=1.3e+02 Score=23.97 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=29.0
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEEec
Q 041429 366 GKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQIE 407 (408)
Q Consensus 366 ~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIqie 407 (408)
+.+.+.+.+..+.......+.+++++.+....|+..+.|.+.
T Consensus 37 ~~v~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i~ 78 (99)
T TIGR02945 37 GHVDIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVELV 78 (99)
T ss_pred CeEEEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence 565555555445556677788899998876568888887763
No 36
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=49.26 E-value=2.8e+02 Score=27.57 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=34.2
Q ss_pred CchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCc
Q 041429 298 EWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPRE 336 (408)
Q Consensus 298 ~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~ 336 (408)
+.+++-++.++++++++.+.++.+.-.-..+++--.++.
T Consensus 106 ~ip~~~~ii~vi~t~il~y~G~~~~~k~~de~~~l~~~~ 144 (356)
T COG4956 106 PIPFISTIIPVILTIILAYFGFQLADKKRDEFLRLLNPN 144 (356)
T ss_pred CccHHHhHHHHHHHHHHHHHhhHHhhhhhHHHHHhcchh
Confidence 688999999999999999999999988888888766653
No 37
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=48.81 E-value=65 Score=25.60 Aligned_cols=66 Identities=11% Similarity=0.199 Sum_probs=42.4
Q ss_pred CcccHHHHHHHHHcCc--CccceeeeEEEEee---CCeEEEEEEEEeCCC------CCHHHHHHHHHHHHHhhCCCc
Q 041429 335 REIDATKLEKGILEME--EVVAIHELHIWAIT---VGKVLLACHVKIQPE------ANADLVLNNVIDYIRREYNII 400 (408)
Q Consensus 335 ~~~~~~~i~~~l~~~~--gV~~v~~l~~~~~~---~~~~~~~v~v~v~~~------~~~~~i~~~i~~~l~~~~~v~ 400 (408)
.+.....+.+.+++.. -+.++.-+-+|+-. .|+.-+.+.+..... .+.+++.+++.+.+.+++|+.
T Consensus 16 ~~~~~~~i~~~i~~~~~~~l~~v~l~D~y~~~~l~~g~kS~~~rl~~~~~~~TLt~~ev~~~~~~i~~~l~~~~~~~ 92 (94)
T PF03147_consen 16 EDVPFADIEEVIRSAGGPLLESVELFDVYRGEKLPEGKKSLTYRLTYQSPDRTLTDEEVNEIHDKIIKALEKKLGAE 92 (94)
T ss_dssp TTS-HHHHHHHHHHHHTTTEEEEEEEEEEESTTSGTTEEEEEEEEEE--SSS---HHHHHHHHHHHHHHHHHTCT-B
T ss_pred CCCCHHHHHHHHHHhCccceeEEEEEEEEcCCCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhCcE
Confidence 3455667777776643 37777777777632 367677777777654 267788888888888887753
No 38
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=47.81 E-value=74 Score=27.86 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=28.5
Q ss_pred eCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEEe
Q 041429 364 TVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQI 406 (408)
Q Consensus 364 ~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIqi 406 (408)
.++++.+++.+..+.-.-.+.+.+++++.|.+. |+..|.|++
T Consensus 23 ~gd~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~-Gv~~V~V~i 64 (146)
T TIGR02159 23 DGGGVVVKFTPTYSGCPALEVIRQDIRDAVRAL-GVEVVEVST 64 (146)
T ss_pred ECCEEEEEEEeCCCCCchHHHHHHHHHHHHHhc-CCCeEEEeE
Confidence 456655554444444456778889999999764 888887765
No 39
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=47.63 E-value=21 Score=26.42 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=36.2
Q ss_pred cHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEE
Q 041429 338 DATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQ 405 (408)
Q Consensus 338 ~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIq 405 (408)
..+++.+.+.+.|+|..++.+ + |.+.+-+++.++...+.+++ +.+.|.+..|+.++...
T Consensus 11 ~~~~~~~~l~~~p~V~~~~~v-----t-G~~d~~~~v~~~d~~~l~~~---i~~~l~~~~gV~~~~t~ 69 (74)
T PF01037_consen 11 AYDEFAEALAEIPEVVECYSV-----T-GEYDLILKVRARDMEELEEF---IREKLRSIPGVRRTETS 69 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEE-----S-SSSSEEEEEEESSHHHHHHH---HHHTHHTSTTEEEEEEE
T ss_pred hHHHHHHHHHcCCCEEEEEEE-----e-CCCCEEEEEEECCHHHHHHH---HHHHhhcCCCEEEEEEE
Confidence 478899999999988655443 3 44444446666544444444 34446656677766654
No 40
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=45.16 E-value=3.7e+02 Score=27.84 Aligned_cols=57 Identities=12% Similarity=0.198 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCc
Q 041429 278 GDSIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPRE 336 (408)
Q Consensus 278 ~D~l~sv~vli~~~~~~~~~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~ 336 (408)
.....+++.+..+++.++.++|+|+=-+.++.-.+.++. +-+..|+.+-|+.+...+
T Consensus 212 ~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~--~~l~~Es~rwl~~~g~~~ 268 (521)
T KOG0255|consen 212 GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLL--WFLPPESPRWLLSKGRID 268 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHccCcChHHHHHcCchH
Confidence 455666677777777777778998877777777766666 555557887777776543
No 41
>PRK10263 DNA translocase FtsK; Provisional
Probab=45.16 E-value=6.1e+02 Score=30.33 Aligned_cols=8 Identities=25% Similarity=0.713 Sum_probs=4.0
Q ss_pred CchhhhHH
Q 041429 298 EWKIVDLI 305 (408)
Q Consensus 298 ~~~~~Dpv 305 (408)
+|.|++.+
T Consensus 180 glSwlsIl 187 (1355)
T PRK10263 180 GWSWVTIA 187 (1355)
T ss_pred hhHHHHHH
Confidence 55555433
No 42
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=42.16 E-value=1.5e+02 Score=25.61 Aligned_cols=49 Identities=10% Similarity=-0.079 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccchHHH---HHhhHHHHHhHHHHHHHHHH
Q 041429 56 RKLLTAVALCVVFMSIEVFGGIKANSLAI---LTDAAHLLSDVAAFAISLFS 104 (408)
Q Consensus 56 ~~l~~~l~~~~~~~~~~~~~g~~s~S~aL---laDa~hsl~D~~s~~~~l~a 104 (408)
-+--+++++|+++.++-.+++.+..+..+ ..++...++.++..++.+++
T Consensus 75 ~~~qls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvA 126 (142)
T PF11712_consen 75 VKRQLSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVA 126 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 34456778888888777666555444433 34455555555555444444
No 43
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=40.99 E-value=1.5e+02 Score=26.82 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=29.0
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEEe
Q 041429 367 KVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQI 406 (408)
Q Consensus 367 ~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIqi 406 (408)
++.+.+.+..+...-...+.+.+++++....++..|.|.+
T Consensus 114 ~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l 153 (174)
T TIGR03406 114 RVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVEL 153 (174)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 5555555555555677888899999997666888888875
No 44
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=40.93 E-value=2e+02 Score=23.46 Aligned_cols=20 Identities=40% Similarity=0.637 Sum_probs=17.4
Q ss_pred CchhHHHHHHHHHHHHHHHH
Q 041429 119 GFFRVEILGALVSMQLIWLL 138 (408)
Q Consensus 119 G~~R~E~l~~l~~~~~L~~~ 138 (408)
||+|.|.+.+++.+++++++
T Consensus 78 GYGr~E~~iG~iiA~l~~~l 97 (99)
T PF09877_consen 78 GYGRIETVIGLIIALLIYLL 97 (99)
T ss_pred CCCeehhhhhHHHHHHHHHH
Confidence 89999999999988887765
No 45
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=40.86 E-value=1.9e+02 Score=23.12 Aligned_cols=65 Identities=8% Similarity=0.017 Sum_probs=33.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCcc
Q 041429 53 ASMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSY 118 (408)
Q Consensus 53 ~~~~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~ 118 (408)
.+++.+...+...+...+..+..... .....+..-+-.+.-++..+.++++...+.+..+.+||+
T Consensus 40 ha~qal~~~i~~~i~~~i~~~l~~~~-~~~~~i~~~~~~~~~l~~~v~~I~~~~~a~~g~~~~~P~ 104 (109)
T PF09685_consen 40 HAKQALNFQITFLIISIILFILSFIL-IFFIGIGILLLIVLWLLSLVLSIIGAIKANKGEPYRYPF 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeeecCe
Confidence 34444554444444433333333322 111222223333334555667777777788888888886
No 46
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=40.64 E-value=1.2e+02 Score=22.38 Aligned_cols=46 Identities=9% Similarity=0.126 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHH---HHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHH
Q 041429 130 VSMQLIWLLAGI---LVYEAIVRLINETSEVNGFLMFLVAAFGLVVNII 175 (408)
Q Consensus 130 ~~~~~L~~~~~~---i~~ea~~~l~~~~~~~~~~~~~~~~~~~l~vn~i 175 (408)
+.++.|+..+.. -+.+.+.+++.+.+.....+.++-++++.++-++
T Consensus 9 v~GivLl~~G~~~~~S~~s~~s~~~TG~~t~~t~~~ligG~va~ivGl~ 57 (59)
T PF11381_consen 9 VGGIVLLYFGYQASDSLGSQVSRAFTGSPTDKTIWYLIGGAVAVIVGLF 57 (59)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHhcCCCCchhHHHHHhHHHHHHHHHh
Confidence 334444444443 2445567778777777777787778777776554
No 47
>PF01390 SEA: SEA domain; InterPro: IPR000082 SEA is an extracellular domain associated with O-glycosylation []. Proteins found to contain SEA-modules include, agrin, enterokinase, 63 kDa Strongylocentrotus purpuratus (Purple sea urchin) sperm protein, perlecan (heparan sulphate proteoglycan core, mucin 1 and the cell surface antigen, 114/A10, and two functionally uncharacterised, probably extracellular, Caenorhabditis elegans proteins. Despite the functional diversity of these adhesive proteins, a common denominator seems to be their existence in heavily glycosylated environments. In addition, the better characterised proteins all contain O-glycosidic-linked carbohydrates such as heparan sulphate that contribute considerably to their molecular masses. The common module might regulate or assist binding to neighbouring carbohydrate moieties. Enterokinase, the initiator of intestinal digestion, is a mosaic protease composed of a distinctive assortment of domains []. ; PDB: 2ACM_B 1IVZ_A 2E7V_A.
Probab=40.45 E-value=1.8e+02 Score=22.97 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=36.1
Q ss_pred cceeeeEEEEeeCCeEEEEEEEEeCCC--CCHHHHHHHHHHHHHhhCCCceEEE
Q 041429 353 VAIHELHIWAITVGKVLLACHVKIQPE--ANADLVLNNVIDYIRREYNIIHVTI 404 (408)
Q Consensus 353 ~~v~~l~~~~~~~~~~~~~v~v~v~~~--~~~~~i~~~i~~~l~~~~~v~~vtI 404 (408)
.++...+++++..|-+.++..+.+.+. .....+.+.++..+.+...+...+|
T Consensus 51 ~~~~~~~I~~f~~gsViv~~~~~f~~~~~~~~~~~~~~l~~~l~~~~~~~~l~i 104 (107)
T PF01390_consen 51 PGFVGVTITSFRPGSVIVDFDVIFDPPSSAPPADIEEALQNALQQTSNIGNLTI 104 (107)
T ss_dssp TTEEEEEEEEEEETEEEEEEEEEEETTT-S-HHHHHHHHHHHHCCHHCCCCCEE
T ss_pred CCcceEEEEEEECCCEEEEEEEEEeCCCCCCHHHHHHHHHHHHHhhcCcccccC
Confidence 577888888888899999999998555 3567777778777765223444443
No 48
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=40.36 E-value=1.9e+02 Score=23.06 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHHc-CcCccceeeeEEEEeeCCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHhhCCCceEEEE
Q 041429 335 REIDATKLEKGILE-MEEVVAIHELHIWAITVGKVLLACHVKIQPE-ANADLVLNNVIDYIRREYNIIHVTIQ 405 (408)
Q Consensus 335 ~~~~~~~i~~~l~~-~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~-~~~~~i~~~i~~~l~~~~~v~~vtIq 405 (408)
++.+.+++++.+++ .+.-..+.....--++.|-..+.+.+.++.+ ...++ +++.|.+--||+++.|.
T Consensus 15 ~evDle~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~~g~td~----lee~i~~ve~V~svev~ 83 (88)
T TIGR00489 15 PDVDLEALKEKIKERIPEGVEIRKIDEEPIAFGLVAINVMVVMGDAEGGTEA----AEESLSGIEGVESVEVT 83 (88)
T ss_pred CccCHHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeEEEEEEecCCcChHH----HHHHHhcCCCccEEEEE
Confidence 45577888888865 4544566777777778888888888888766 34544 44555444478877763
No 49
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=40.14 E-value=1.6e+02 Score=28.93 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=41.6
Q ss_pred cccHHHHHHHHHcCcCccceeee---------EEEEeeC---------CeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhC
Q 041429 336 EIDATKLEKGILEMEEVVAIHEL---------HIWAITV---------GKVLLACHVKIQPEANADLVLNNVIDYIRREY 397 (408)
Q Consensus 336 ~~~~~~i~~~l~~~~gV~~v~~l---------~~~~~~~---------~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~ 397 (408)
+.+.+.+++.+++.|||.+++-+ +-| .+. +-+-.++.|+++++.+..+..+++++++++..
T Consensus 78 ~~~~~~l~~~l~~~~~V~~v~~iskeeAl~~l~~~-~g~~~~l~~l~~nPLP~si~V~l~~~~~~~~~~~~l~~~l~~~~ 156 (309)
T TIGR00439 78 QSDADTVVSLLTRDKGVENINYISREDGLAEFQSW-SGFGNLLSMLDGNPLPAVFIVTPDPAFTPAEMQAILRDNITKIP 156 (309)
T ss_pred HHHHHHHHHHHhCCCCccEEEEECHHHHHHHHHHh-cCCchhhhhcccCCCCCeEEEEeCCCCChHHHHHHHHHHHhcCC
Confidence 34556788889999988776542 112 111 11223455666655566677788888887666
Q ss_pred CCceEE
Q 041429 398 NIIHVT 403 (408)
Q Consensus 398 ~v~~vt 403 (408)
++..|.
T Consensus 157 gV~~v~ 162 (309)
T TIGR00439 157 GVEEVR 162 (309)
T ss_pred CCCccc
Confidence 777664
No 50
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=39.40 E-value=29 Score=24.37 Aligned_cols=17 Identities=6% Similarity=0.178 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHHHHHHH
Q 041429 300 KIVDLICTLIFSVIVLG 316 (408)
Q Consensus 300 ~~~Dpv~si~is~~il~ 316 (408)
+++||+.++++++.-.+
T Consensus 5 r~lDP~~av~iG~~ayy 21 (47)
T PF11654_consen 5 RFLDPLFAVFIGTSAYY 21 (47)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 57999999998876444
No 51
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=38.94 E-value=7.1e+02 Score=29.27 Aligned_cols=44 Identities=9% Similarity=0.001 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCcccHHHHHHHHHcCc
Q 041429 304 LICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEME 350 (408)
Q Consensus 304 pv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~~~~~~i~~~l~~~~ 350 (408)
.+..++.++.++...+.+++.....-. ....+.+++++.+.+..
T Consensus 206 ~~~~~~~~~~l~~a~~~l~r~~~~~~~---~~~~d~~~~~~ll~~yG 249 (1094)
T PRK02983 206 ALLGLFGAAALIAALIVLFRSQRADNA---LTGEDELAIRGLLLLYG 249 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcC---CCchhHHHHHHHHHHhC
Confidence 445555555666666655554322111 11234477888776643
No 52
>COG4035 Predicted membrane protein [Function unknown]
Probab=38.57 E-value=21 Score=28.66 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=16.8
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 041429 119 GFFRVEILGALVSMQLIWLLA 139 (408)
Q Consensus 119 G~~R~E~l~~l~~~~~L~~~~ 139 (408)
||+|+|++.+-+.++++|+.+
T Consensus 85 GYGR~Etv~Gt~LA~l~wL~~ 105 (108)
T COG4035 85 GYGRVETVVGTFLAVLLWLYF 105 (108)
T ss_pred CCceeehhHHHHHHHHHHHhh
Confidence 899999999877777776654
No 53
>KOG2877 consensus sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid transport and metabolism]
Probab=37.27 E-value=2.5e+02 Score=28.62 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=14.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHH
Q 041429 262 KKQQNINVRGAYLHVLGDSIQSIGVMIG 289 (408)
Q Consensus 262 ~~~~s~~l~a~~~h~~~D~l~sv~vli~ 289 (408)
||.++..-.+.--++=+|+++++.+.++
T Consensus 109 RRTnsSsPLGELFDHG~DS~stvf~~l~ 136 (389)
T KOG2877|consen 109 RRTNSSSPLGELFDHGCDSISTVFVTLA 136 (389)
T ss_pred ccCCCCCCcHhhhcccchhHHHHHHHHH
Confidence 3333333334445666666666655554
No 54
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=36.35 E-value=4.2e+02 Score=25.86 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041429 125 ILGALVSMQLIWLLAGILVYEAIVRLI 151 (408)
Q Consensus 125 ~l~~l~~~~~L~~~~~~i~~ea~~~l~ 151 (408)
....++++++++++++++.+..+..+.
T Consensus 252 ~~~p~~s~~l~i~~G~~~~~~~~~~~~ 278 (279)
T PRK10019 252 RRAPYFSSLLIGLVGVYMGVHGFMGIM 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334567777888889988888887664
No 55
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=36.22 E-value=5.5e+02 Score=27.24 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=20.2
Q ss_pred CCeEEEEEEEEeCCCC--CHHHHHHHHHHHHHhhCC
Q 041429 365 VGKVLLACHVKIQPEA--NADLVLNNVIDYIRREYN 398 (408)
Q Consensus 365 ~~~~~~~v~v~v~~~~--~~~~i~~~i~~~l~~~~~ 398 (408)
.|-+.++++-+++++. +..+..++.++ .+++.|
T Consensus 422 ~gpv~v~~~y~i~~~~~~~f~~~~~~~~~-~r~r~g 456 (524)
T PF05977_consen 422 SGPVMVTIEYRIAPEDAAAFLAAMRELRR-IRRRDG 456 (524)
T ss_pred CCCEEEEEEEEECcccHHHHHHHHHHHHH-HHhhcC
Confidence 4558899999998884 44555555443 343434
No 56
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=36.11 E-value=2.1e+02 Score=28.21 Aligned_cols=69 Identities=12% Similarity=0.136 Sum_probs=39.4
Q ss_pred hccCCCcccHHHHHHHHHcCcCccceeee---------EEEEee--------CCeEEEEEEEEeCCCCCHHHHHHHHHHH
Q 041429 330 MESTPREIDATKLEKGILEMEEVVAIHEL---------HIWAIT--------VGKVLLACHVKIQPEANADLVLNNVIDY 392 (408)
Q Consensus 330 l~~~p~~~~~~~i~~~l~~~~gV~~v~~l---------~~~~~~--------~~~~~~~v~v~v~~~~~~~~i~~~i~~~ 392 (408)
++..+++.+.+.+++.++.+|||.++.-+ .=| ++ ++-+--.+.|.++++.+..++.+++++
T Consensus 65 L~~~~~~~~~~~v~~~i~~~~gV~~v~~~sre~~l~~L~~~-lg~~~~~~l~~nPLP~~~vV~~~~p~~~~~i~~~l~~- 142 (297)
T COG2177 65 LQIDADQDDAALVREKIEGIPGVKSVRFISREEALKELQPW-LGFGALLMLDENPLPDVFVVTPDDPPQVKAIAAALRD- 142 (297)
T ss_pred EecCCChHHHHHHHHHHhcCCCcceEEEeCHHHHHHHHHHH-cCchhhhcCCCCCCCceEEEEeCCCccHHHHHHHHHc-
Confidence 44555666667788899999988766532 112 22 122333445666665666665555543
Q ss_pred HHhhCCCceEE
Q 041429 393 IRREYNIIHVT 403 (408)
Q Consensus 393 l~~~~~v~~vt 403 (408)
..|+.+|.
T Consensus 143 ---l~gV~~V~ 150 (297)
T COG2177 143 ---LPGVAEVD 150 (297)
T ss_pred ---Cccceehh
Confidence 44666554
No 57
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=35.95 E-value=3.5e+02 Score=24.79 Aligned_cols=20 Identities=10% Similarity=0.066 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 041429 61 AVALCVVFMSIEVFGGIKAN 80 (408)
Q Consensus 61 ~l~~~~~~~~~~~~~g~~s~ 80 (408)
++....+++++..+.++++.
T Consensus 86 ~L~~~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 86 SLLFFGIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33333444444444444444
No 58
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=35.41 E-value=2e+02 Score=25.51 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCC---CCHHHHHHHHHHHHHh-hCCCceEEEEec
Q 041429 339 ATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPE---ANADLVLNNVIDYIRR-EYNIIHVTIQIE 407 (408)
Q Consensus 339 ~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~---~~~~~i~~~i~~~l~~-~~~v~~vtIqie 407 (408)
.+++.+.+.++|+|.+. .+- +.+...++- |.++.. ...+++.+++.+++++ +..+.+|.|--+
T Consensus 56 A~~Ia~~v~~v~~V~dA---~vv-Vtg~~A~Vg--v~~~~~~~~~~~~~iK~~Va~~Vk~~dp~~~~VyVsaD 122 (158)
T TIGR02898 56 ADEIASEAAKVKGVKDA---TVV-ITGNYAYVG--VDLTNGLEGSVTDELKEKVAETVKSTDNRIANVYVSAD 122 (158)
T ss_pred HHHHHHHHhcCCCCceE---EEE-EECCEEEEE--EEcCCCcchhhHHHHHHHHHHHHHhhCCCcceEEEEcC
Confidence 35566667778877554 444 345554443 344433 3478888899999887 446777776543
No 59
>PRK11118 putative monooxygenase; Provisional
Probab=34.30 E-value=2e+02 Score=23.51 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=40.5
Q ss_pred HHHHHHHcCcCccceeeeEEEEeeCCeE-EEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEEe
Q 041429 341 KLEKGILEMEEVVAIHELHIWAITVGKV-LLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQI 406 (408)
Q Consensus 341 ~i~~~l~~~~gV~~v~~l~~~~~~~~~~-~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIqi 406 (408)
.+.+.+.+.||. -.++|+...+.- ..-+ -.++..+.++..++.-..++ +.+||.+|.+++
T Consensus 25 ~LA~sI~~EpGl----iWKIWTen~~t~eaGGi-YlF~~e~~a~aYl~mH~aRL-~~~Gv~~v~~ki 85 (100)
T PRK11118 25 PLAESINEEPGF----IWKIWTENEKTQEAGGI-YLFEDEASAEAYLEMHTARL-KNFGVEEVRAKI 85 (100)
T ss_pred HHHHHHhcCCCc----eEEEeecCCCCcccceE-EEECCHHHHHHHHHHHHHHH-HhcCCCeeEEEE
Confidence 455666778884 578997654432 2222 23455677888888888888 477999988764
No 60
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=33.91 E-value=1.6e+02 Score=22.97 Aligned_cols=62 Identities=11% Similarity=0.280 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEEec
Q 041429 339 ATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQIE 407 (408)
Q Consensus 339 ~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIqie 407 (408)
-+.+++.+.++ |..+|.++|+ |++ +.+.+..+....+.+.++++-+.+....-+.+.+|.++
T Consensus 18 G~ai~~al~~l-G~~~v~~Vr~-----GK~-~~l~~~~~~~e~a~~~v~~i~~~LLaNpvie~y~i~~~ 79 (80)
T PF02700_consen 18 GEAIKRALHRL-GYDGVKDVRV-----GKY-IELELEADDEEEAEEQVEEICEKLLANPVIEDYEIEVE 79 (80)
T ss_dssp HHHHHHHHHHT-T-TTEEEEEE-----EEE-EEEEEE-SSHHHHHHHHHHHHHHTTS-TTTEEEEEEEE
T ss_pred HHHHHHHHHHc-CCcccCcEEE-----EEE-EEEEEeCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEE
Confidence 35677777664 6666777775 333 23344433323444444444444432223788888775
No 61
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=33.62 E-value=6.1e+02 Score=27.01 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=16.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041429 264 QQNINVRGAYLHVLGDSIQSIGVMIGGAI 292 (408)
Q Consensus 264 ~~s~~l~a~~~h~~~D~l~sv~vli~~~~ 292 (408)
.++......+.|...=.+.++.+.++.++
T Consensus 372 rRn~vKl~lYr~F~n~l~~~Vvas~~~i~ 400 (518)
T KOG2568|consen 372 RRNIVKLSLYRKFTNTLAFSVVASFAFIL 400 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556667777666666655554433
No 62
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=32.60 E-value=1.3e+02 Score=30.51 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=57.8
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc------cCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccC
Q 041429 260 EQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAIIWYK------PEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMEST 333 (408)
Q Consensus 260 ~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~~~~~~------~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~ 333 (408)
...+.++..+..++.|.+.|...=+..+.++.+.... +||.=+|-+++++-.++|-.....++.+++..|+...
T Consensus 92 Gg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv~~IW~~tgvLV~~Ai~Rl~s~~ 171 (379)
T KOG1482|consen 92 GGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSVLLIWVVTGVLVYEAIQRLLSGD 171 (379)
T ss_pred CCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCc
Confidence 3456688888899999999988777666665554431 2677789999988888888888999999999888765
No 63
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.62 E-value=2.3e+02 Score=26.60 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=22.1
Q ss_pred CCCCccCchhHHHHHHHHHHHHHHHHHHHH
Q 041429 113 NPRQSYGFFRVEILGALVSMQLIWLLAGIL 142 (408)
Q Consensus 113 ~~~~p~G~~R~E~l~~l~~~~~L~~~~~~i 142 (408)
..++..+..++|.+..++-+++++++++..
T Consensus 51 ~~~~~~~~~~lE~~WtviP~iil~~l~~~s 80 (228)
T MTH00140 51 SCRTILEAQKLETIWTIVPALILVFLALPS 80 (228)
T ss_pred CCccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 346667888999999888777776665543
No 64
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=31.60 E-value=1.9e+02 Score=22.51 Aligned_cols=53 Identities=4% Similarity=0.147 Sum_probs=34.5
Q ss_pred cceeeeEEEEeeCCeEEEEEEEEeCCC--CCHHHHHHHHHHHHHhhCCCceEEEEe
Q 041429 353 VAIHELHIWAITVGKVLLACHVKIQPE--ANADLVLNNVIDYIRREYNIIHVTIQI 406 (408)
Q Consensus 353 ~~v~~l~~~~~~~~~~~~~v~v~v~~~--~~~~~i~~~i~~~l~~~~~v~~vtIqi 406 (408)
.++..+.+.+ ++.++.+.++..-|+- ....+-++++++.|++.+++....|++
T Consensus 18 agis~IeI~R-t~~~i~I~I~tarPg~vIG~~G~~i~~L~~~L~k~~~~~~~~i~v 72 (81)
T cd02413 18 DGYSGVEVRV-TPTRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFNFPEGSVEL 72 (81)
T ss_pred CCeeeEEEEE-cCCeEEEEEEeCCCceEECCCchhHHHHHHHHHHHhCCCCCeEEE
Confidence 5667777876 3566666666555544 233344577788887777877776666
No 65
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=29.45 E-value=2.5e+02 Score=21.25 Aligned_cols=33 Identities=12% Similarity=0.004 Sum_probs=22.4
Q ss_pred CCCCCCCccCchhHHHHHHHHHHHHHHHHHHHH
Q 041429 110 WESNPRQSYGFFRVEILGALVSMQLIWLLAGIL 142 (408)
Q Consensus 110 ~~~~~~~p~G~~R~E~l~~l~~~~~L~~~~~~i 142 (408)
++..+++..+..++|.+...+=+++++++++--
T Consensus 49 ~~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~pS 81 (84)
T PF02790_consen 49 SKFPNKFFNHNNKLEIIWTIIPAIILLFLAFPS 81 (84)
T ss_dssp SSSS--S---SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhhhhHHHHHHHHHHHhhh
Confidence 355567788888999999999988888877643
No 66
>PRK05783 hypothetical protein; Provisional
Probab=29.42 E-value=1.7e+02 Score=23.15 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=32.3
Q ss_pred cHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhh----CCCceEEEEecC
Q 041429 338 DATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRRE----YNIIHVTIQIER 408 (408)
Q Consensus 338 ~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~----~~v~~vtIqie~ 408 (408)
.-+.|++.|..+ |...+.++|+ |+++ .+.++.+ +..+..+++++.+.+. .-|++++|.+++
T Consensus 19 qG~aI~~aL~~l-g~~~V~~VRv-----GK~i---el~l~~~-~~e~a~~~v~~mc~~LrLaNpVIe~y~i~~~~ 83 (84)
T PRK05783 19 EGETIQRYVIER-YTGNIIEVRA-----GKYL---VFKIEAN-SPEEAKELALKIAREGRLYNPIVHKIVVRVRR 83 (84)
T ss_pred hHHHHHHHHHHc-CCCCcceEEe-----eEEE---EEEEcCC-CHHHHHHHHHHHHHhcCcCCceeEEEEEEEEe
Confidence 346677877554 4445677764 4432 3444443 2333344444444433 237777887763
No 67
>PRK13262 ureE urease accessory protein UreE; Provisional
Probab=27.71 E-value=40 Score=31.91 Aligned_cols=8 Identities=50% Similarity=0.920 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 041429 196 DHGMGHRH 203 (408)
Q Consensus 196 ~~~~~~~~ 203 (408)
+|.++|+|
T Consensus 204 ~~~~~h~h 211 (231)
T PRK13262 204 SHEEGHSH 211 (231)
T ss_pred ccccCCcc
Confidence 44444444
No 68
>PRK11023 outer membrane lipoprotein; Provisional
Probab=27.68 E-value=1.3e+02 Score=27.41 Aligned_cols=68 Identities=7% Similarity=0.035 Sum_probs=38.9
Q ss_pred hhccCCCcccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEE
Q 041429 329 LMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQ 405 (408)
Q Consensus 329 Ll~~~p~~~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIq 405 (408)
|.+..|.+...++..+.+++++||.+|.+-=.- .+.. .+....+-..|..+++..|...-.+...-|+
T Consensus 81 L~G~V~~~~~k~~A~~ia~~v~GV~~V~N~l~V--~~~~-------~~~~~~~D~~It~kik~~L~~~~~v~~~~I~ 148 (191)
T PRK11023 81 LTGQSPNAELSERAKQIAMGVEGVNEVYNEIRQ--GQPI-------GLGTASKDTWITTKVRSQLLTSDSVKSSNVK 148 (191)
T ss_pred EEEEeCCHHHHHHHHHHHhcCCCceeecceeee--cccc-------ccccccCcHHHHHHHHHHHhcCCCCCcceEE
Confidence 566777777777888888999998888754211 1110 0111123344777777777654444433333
No 69
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=27.52 E-value=7.2e+02 Score=25.85 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=17.1
Q ss_pred HHHHhHHHHHHHHHHH-HHhcCCCCCCCccCchh
Q 041429 90 HLLSDVAAFAISLFSL-WAAGWESNPRQSYGFFR 122 (408)
Q Consensus 90 hsl~D~~s~~~~l~a~-~~s~~~~~~~~p~G~~R 122 (408)
-++.-.+.+++...+. ++-+|.|+.+.||-...
T Consensus 394 ~~~~~~i~y~l~~~a~i~lR~~~p~~~rp~r~p~ 427 (501)
T TIGR00911 394 ISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPL 427 (501)
T ss_pred HHHHHHHHHHHHHHHHHheeccCCCCCCCccCch
Confidence 3444444555554444 44455666666775443
No 70
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=27.35 E-value=38 Score=24.51 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=24.0
Q ss_pred hhccCCCcccHHHHHHHHHcCcCccceeee
Q 041429 329 LMESTPREIDATKLEKGILEMEEVVAIHEL 358 (408)
Q Consensus 329 Ll~~~p~~~~~~~i~~~l~~~~gV~~v~~l 358 (408)
|.+..|.....+.+.+.+..++||..|.+-
T Consensus 30 L~G~v~s~~~~~~a~~~a~~v~gv~~V~n~ 59 (64)
T PF04972_consen 30 LSGEVPSQEQRDAAERLARSVAGVREVVNQ 59 (64)
T ss_dssp EEEEESSCHHHHHHHHHHHCC-STSEEEEE
T ss_pred EEeeCcHHHHHHhHHhhhccCCCcCEEEEe
Confidence 567778888888999999999999888753
No 71
>COG2092 EFB1 Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis]
Probab=27.22 E-value=3.3e+02 Score=21.80 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=41.5
Q ss_pred CcccHHHHHHHHHc-C-cCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEE
Q 041429 335 REIDATKLEKGILE-M-EEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTI 404 (408)
Q Consensus 335 ~~~~~~~i~~~l~~-~-~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtI 404 (408)
++.+.+.+++.+++ + +|+ .+.....--++.|-..+.+.+.+ ++.+. -.+++++.|...-||.++.|
T Consensus 15 ~evdl~~L~~~ik~~l~~g~-~~~~~~~epIaFGLkal~l~vvv-~D~Eg--~td~~ee~l~~vegV~svev 82 (88)
T COG2092 15 PEVDLEELEEKIKEKLPEGY-ELIKIEEEPIAFGLKALKLYVVV-EDKEG--GTDALEEALEEVEGVESVEV 82 (88)
T ss_pred CCCCHHHHHHHHHHhccccc-eeccceeEeeeeeeeeEEEEEEE-ccccc--CcHHHHHHHhhccCcceEEE
Confidence 34567777777755 4 444 33366666677788888888888 44433 34556666765557777665
No 72
>COG1279 Lysine efflux permease [General function prediction only]
Probab=27.14 E-value=3.6e+02 Score=25.02 Aligned_cols=92 Identities=21% Similarity=0.121 Sum_probs=55.5
Q ss_pred chhhHHHHHHHHHHHHHHH-HHHHHHHHHHhccCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCcccHHHHHH
Q 041429 266 NINVRGAYLHVLGDSIQSI-GVMIGGAIIWYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEK 344 (408)
Q Consensus 266 s~~l~a~~~h~~~D~l~sv-~vli~~~~~~~~~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~~~~~~i~~ 344 (408)
+..+.....=..+|++--. +|.-...++. ..+|+.++.-..=++++++.++..+|++.+--.+..+.+....+.++
T Consensus 34 ~~~l~~~~~c~i~D~~Li~~gv~G~~~li~---~~p~l~~i~~~~G~~FLl~yg~~a~~~a~~~~~~~~~~~~~~~~~~~ 110 (202)
T COG1279 34 EYVLPIALLCAISDIVLISAGVFGVGALIA---KSPWLLLIVRWGGAAFLLYYGLLALKSAPRGPSQLQVAEFTKLKLKK 110 (202)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhccccccccccHHH
Confidence 5566677777778855444 3333333333 46789999999999999999999999999843332222333333333
Q ss_pred HHHcCcCccceeeeEEE
Q 041429 345 GILEMEEVVAIHELHIW 361 (408)
Q Consensus 345 ~l~~~~gV~~v~~l~~~ 361 (408)
.+.. --+.+.-|.|++
T Consensus 111 ~l~~-alavT~LNPhvy 126 (202)
T COG1279 111 VLLF-ALAVTLLNPHVY 126 (202)
T ss_pred HHHH-HHHHHHhCchhh
Confidence 3321 112455556655
No 73
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=26.93 E-value=6.8e+02 Score=25.82 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccCchhH
Q 041429 96 AAFAISLFSLWAAGWESNPRQSYGFFRV 123 (408)
Q Consensus 96 ~s~~~~l~a~~~s~~~~~~~~p~G~~R~ 123 (408)
++.++...+....+|+++++.||..++.
T Consensus 394 i~y~~~~~~~l~~~~~~~~~~~f~lg~~ 421 (482)
T TIGR00907 394 VSYVIPIICKLAKGRNTIAPGPFWLGKY 421 (482)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCcCCcc
Confidence 3444444333333444455556655443
No 74
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=26.84 E-value=3.2e+02 Score=25.14 Aligned_cols=16 Identities=0% Similarity=0.009 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 041429 277 LGDSIQSIGVMIGGAI 292 (408)
Q Consensus 277 ~~D~l~sv~vli~~~~ 292 (408)
.+|+++...++++.++
T Consensus 42 Ka~TLGv~LILlgv~l 57 (197)
T PRK12585 42 ISNTFGVSLLLFATVG 57 (197)
T ss_pred cchhhhHHHHHHHHHH
Confidence 3566666666666554
No 75
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=25.22 E-value=2.5e+02 Score=32.55 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=27.8
Q ss_pred HHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 041429 340 TKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIR 394 (408)
Q Consensus 340 ~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~ 394 (408)
+.+++.+.+++|| ++++... ..|. ..+.++++.+.+.+...+++++++.
T Consensus 65 ~piE~~l~~i~gv---~~i~S~s-~~G~--s~i~l~f~~~~d~~~a~~~v~~~v~ 113 (1025)
T PRK10614 65 TPLERSLGRIAGV---NEMTSSS-SLGS--TRIILQFDFDRDINGAARDVQAAIN 113 (1025)
T ss_pred HHHHHHhcCCCCc---eEEEEEe-cCCe--EEEEEEEECCCChHHHHHHHHHHHH
Confidence 3455656556655 5555553 3455 4445666666665555666666654
No 76
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=25.07 E-value=2.7e+02 Score=32.33 Aligned_cols=50 Identities=8% Similarity=0.180 Sum_probs=31.0
Q ss_pred HHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHh
Q 041429 341 KLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRR 395 (408)
Q Consensus 341 ~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~ 395 (408)
.+++.+. ++.++++++......|. ..+.++++.+.+.++..+++++++.+
T Consensus 64 plE~~l~---~v~gv~~i~S~S~~~G~--s~i~v~f~~g~d~~~a~~~V~~~v~~ 113 (1037)
T PRK10555 64 VIEQNMT---GLDNLMYMSSQSSGTGQ--ASVTLSFKAGTDPDEAVQQVQNQLQS 113 (1037)
T ss_pred HHHHHhc---CCCCceEEEEEecCCCe--EEEEEEEECCCCHHHHHHHHHHHHHH
Confidence 3445444 44555666665422354 45567777777888888888887753
No 77
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=24.72 E-value=3.7e+02 Score=22.04 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhc-cCCCcccHHHHHHHHHc
Q 041429 305 ICTLIFSVIVLGTTFNMLRNILEVLME-STPREIDATKLEKGILE 348 (408)
Q Consensus 305 v~si~is~~il~~~~~l~~~s~~~Ll~-~~p~~~~~~~i~~~l~~ 348 (408)
.+.++++++.+..+.-++.-..+.+-+ ..+++...+++++.+..
T Consensus 73 ~a~liv~~~~l~la~i~~~~~~~~l~~~~~~~~~t~~~l~~d~~~ 117 (121)
T PF07332_consen 73 LAFLIVAGLYLLLALILLLIGRRRLRRAPPPFEETIAELKEDIAA 117 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 355555556565666666666666653 44455566677766543
No 78
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.63 E-value=3e+02 Score=20.47 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=39.2
Q ss_pred cHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCC
Q 041429 338 DATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNI 399 (408)
Q Consensus 338 ~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v 399 (408)
.++++-+.+.+.. ..+.+++...+ .+.+.+.+.+.++++.+..++.+.++... ++.++
T Consensus 12 iv~~vt~~la~~~--~nI~dl~~~~~-~~~f~~~~~v~~p~~~~~~~l~~~l~~l~-~~l~l 69 (75)
T cd04870 12 LTSALTEVLAAHG--VRILDVGQAVI-HGRLSLGILVQIPDSADSEALLKDLLFKA-HELGL 69 (75)
T ss_pred HHHHHHHHHHHCC--CCEEecccEEE-cCeeEEEEEEEcCCCCCHHHHHHHHHHHH-HHcCc
Confidence 3566777676654 47777765544 46788888888887777777777776655 45444
No 79
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=23.97 E-value=3.1e+02 Score=23.55 Aligned_cols=53 Identities=9% Similarity=0.328 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCc
Q 041429 337 IDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNII 400 (408)
Q Consensus 337 ~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~ 400 (408)
+..+.+++.+++ .++.+++.+ +..|+++. .++.+..++..++++.|.+.+|..
T Consensus 19 i~MaeLr~~l~~----~Gf~~V~Ty-i~SGNvvf------~~~~~~~~l~~~ie~~l~~~fG~~ 71 (137)
T PF08002_consen 19 IKMAELREALED----LGFTNVRTY-IQSGNVVF------ESDRDPAELAAKIEKALEERFGFD 71 (137)
T ss_dssp --HHHHHHHHHH----CT-EEEEEE-TTTTEEEE------EESS-HHHHHHHHHHHHHHH-TT-
T ss_pred ccHHHHHHHHHH----cCCCCceEE-EeeCCEEE------ecCCChHHHHHHHHHHHHHhcCCC
Confidence 456778887776 467888888 56777554 367889999999999999999863
No 80
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=23.69 E-value=3.2e+02 Score=20.47 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=37.0
Q ss_pred cHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCC
Q 041429 338 DATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNI 399 (408)
Q Consensus 338 ~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v 399 (408)
....+-+.+.+.. ..+.+.+...+ ++++.+.+.+.++++ +..++.+.+++.. +++|+
T Consensus 15 iv~~v~~~l~~~g--~ni~d~~~~~~-~~~f~~~~~v~~~~~-~~~~l~~~L~~l~-~~~~l 71 (76)
T PF13740_consen 15 IVAAVTGVLAEHG--CNIEDSRQAVL-GGRFTLIMLVSIPED-SLERLESALEELA-EELGL 71 (76)
T ss_dssp HHHHHHHHHHCTT---EEEEEEEEEE-TTEEEEEEEEEESHH-HHHHHHHHHHHHH-HHTT-
T ss_pred HHHHHHHHHHHCC--CcEEEEEEEEE-cCeEEEEEEEEeCcc-cHHHHHHHHHHHH-HHCCc
Confidence 4566777777765 47888888876 578888899999844 4445555554432 34443
No 81
>PRK02047 hypothetical protein; Provisional
Probab=23.65 E-value=1.7e+02 Score=23.39 Aligned_cols=58 Identities=10% Similarity=0.041 Sum_probs=32.8
Q ss_pred cHHHHHHHHHcCcCccceeeeEEEEeeCCeE-EEEEEEEeCCCCCHHHHHHHHHHHHHhhCCC
Q 041429 338 DATKLEKGILEMEEVVAIHELHIWAITVGKV-LLACHVKIQPEANADLVLNNVIDYIRREYNI 399 (408)
Q Consensus 338 ~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~-~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v 399 (408)
..+.+.+.++....-.+...+..+.-+.|+| -+++.+.+....+.+. +-+.|.+.-.|
T Consensus 29 ~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~----iY~~L~~~~~V 87 (91)
T PRK02047 29 FADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDN----IYRALTGHPMV 87 (91)
T ss_pred HHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHH----HHHHHhhCCCE
Confidence 3456677676554323445566676667775 4777777666544444 44444433334
No 82
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=23.37 E-value=3.1e+02 Score=31.93 Aligned_cols=45 Identities=11% Similarity=0.177 Sum_probs=27.6
Q ss_pred CcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHh
Q 041429 349 MEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRR 395 (408)
Q Consensus 349 ~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~ 395 (408)
+.+|.++++++......|. ..+.++++.+.+.+...+++++++.+
T Consensus 69 l~~v~gi~~i~S~S~~~G~--s~I~v~f~~g~d~~~a~~~V~~~i~~ 113 (1049)
T PRK15127 69 MNGIDNLMYMSSNSDSTGT--VQITLTFESGTDADIAQVQVQNKLQL 113 (1049)
T ss_pred hcCCCCceEEEEEecCCce--EEEEEEEECCCChHHHHHHHHHHHHH
Confidence 4455556777665422344 44566777777777777777777753
No 83
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=23.30 E-value=2.1e+02 Score=24.81 Aligned_cols=60 Identities=18% Similarity=0.100 Sum_probs=36.2
Q ss_pred ccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEE
Q 041429 337 IDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQ 405 (408)
Q Consensus 337 ~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIq 405 (408)
...+.+.+.+.+.|+|..++.+ + |.+.+-+.+.++...+.+++ +.+.+.+.-||.++...
T Consensus 81 ~~~~~~~~~l~~~p~V~~~~~~-----t-G~~dl~~~v~~~d~~~l~~~---~~~~l~~~~gV~~~~t~ 140 (153)
T PRK11179 81 KDYPSALAKLESLDEVVEAYYT-----T-GHYSIFIKVMCRSIDALQHV---LINKIQTIDEIQSTETL 140 (153)
T ss_pred ccHHHHHHHHhCCCCEEEEEEc-----c-cCCCEEEEEEECCHHHHHHH---HHHHhhcCCCeeeEEEE
Confidence 4567788889999988655544 2 45555566666654444444 44555544577655443
No 84
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=22.87 E-value=3.2e+02 Score=20.25 Aligned_cols=64 Identities=6% Similarity=0.139 Sum_probs=41.1
Q ss_pred cHHHHHHHHHcCcCccceeeeEEEEee-----CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEE
Q 041429 338 DATKLEKGILEMEEVVAIHELHIWAIT-----VGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQ 405 (408)
Q Consensus 338 ~~~~i~~~l~~~~gV~~v~~l~~~~~~-----~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIq 405 (408)
.+.++.+.+.+.. ..+.++...... .+.+.+.+.+.++++.+..++.+.++... +++|+. +.+|
T Consensus 12 iv~~it~~l~~~~--~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~-~~~~~~-~~~~ 80 (81)
T cd04869 12 IVHEVTQFLAQRN--INIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELC-DDLNVD-ISLE 80 (81)
T ss_pred HHHHHHHHHHHcC--CCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHH-HHhcce-EEec
Confidence 4566777676544 466677665542 15577788888887667888888887744 566644 4444
No 85
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=22.67 E-value=8.2e+02 Score=24.85 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=34.0
Q ss_pred HHHHHHHHHH--HHHhhcc---chHHHHHhhHHHHHhHHHHHHHHHHHHHhcCC
Q 041429 63 ALCVVFMSIE--VFGGIKA---NSLAILTDAAHLLSDVAAFAISLFSLWAAGWE 111 (408)
Q Consensus 63 ~~~~~~~~~~--~~~g~~s---~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~ 111 (408)
++.+...++| +++.+|. ++..|.-|++.+..-+...++.-+++-+..++
T Consensus 76 iLtlsv~~iEv~li~~~Ml~g~~~~tlaRDtvfa~vMi~~nGilGl~ll~GGlr 129 (366)
T PRK10599 76 ILSLSVVILEVSLISALMATGDAAPTLMRDTLYSIIMIVTGGLVGFSLLLGGRK 129 (366)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhccHHHHHHHHhccc
Confidence 3444444444 4555554 78999999999999988887777776666543
No 86
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.58 E-value=3.5e+02 Score=25.29 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=21.7
Q ss_pred CCCCccCchhHHHHHHHHHHHHHHHHHHH
Q 041429 113 NPRQSYGFFRVEILGALVSMQLIWLLAGI 141 (408)
Q Consensus 113 ~~~~p~G~~R~E~l~~l~~~~~L~~~~~~ 141 (408)
..++-.+..++|.+..++-+++|+++++.
T Consensus 51 ~~~~~~~~~~lEi~WtviP~iil~~l~~~ 79 (225)
T MTH00168 51 TNRFLLDSQMIEFVWTIIPAFILISLALP 79 (225)
T ss_pred CcccccCCchhhhhhhHHHHHHHHHHHHH
Confidence 34555678899999988888777776654
No 87
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.28 E-value=3.1e+02 Score=19.86 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=32.2
Q ss_pred cHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHH
Q 041429 338 DATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNV 389 (408)
Q Consensus 338 ~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i 389 (408)
.+..+.+.+.+.. ..+.++.......+...+.+.++++.......+++++
T Consensus 12 ~L~~i~~~i~~~~--~nI~~v~~~~~~~~~~~~~~~vev~~~~~l~~i~~~L 61 (74)
T cd04887 12 MLGRVTTAIGEAG--GDIGAIDLVEQGRDYTVRDITVDAPSEEHAETIVAAV 61 (74)
T ss_pred hHHHHHHHHHHcC--CcEEEEEEEEecCCEEEEEEEEEcCCHHHHHHHHHHH
Confidence 4567777776654 3555666554445667788888888776666665554
No 88
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=22.27 E-value=4e+02 Score=22.86 Aligned_cols=52 Identities=10% Similarity=-0.013 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcccchhHHHHHHHHHHHHHHHHH
Q 041429 126 LGALVSMQLIWLLAGILVYEAIVRLI-NETSEVNGFLMFLVAAFGLVVNIIMA 177 (408)
Q Consensus 126 l~~l~~~~~L~~~~~~i~~ea~~~l~-~~~~~~~~~~~~~~~~~~l~vn~i~~ 177 (408)
++..++.++-++.+++.+|-.....+ ..+...-....++.+++.+++.++++
T Consensus 79 ls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~l~ 131 (142)
T PF11712_consen 79 LSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVVLY 131 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555554444444 21222222333444445555555443
No 89
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.20 E-value=3.1e+02 Score=25.11 Aligned_cols=34 Identities=15% Similarity=0.042 Sum_probs=24.8
Q ss_pred cCCCCCCCccCchhHHHHHHHHHHHHHHHHHHHH
Q 041429 109 GWESNPRQSYGFFRVEILGALVSMQLIWLLAGIL 142 (408)
Q Consensus 109 ~~~~~~~~p~G~~R~E~l~~l~~~~~L~~~~~~i 142 (408)
++.+..+++.+-.++|.+..++-.++++++++.-
T Consensus 35 ~~~~~~~~~~~n~~lEiiWTviPiiill~L~~~s 68 (194)
T MTH00047 35 SGNGSVNFGSENQVLELLWTVVPTLLVLVLCFLN 68 (194)
T ss_pred ccccccccccCCceeeehhhHHHHHHHHHHHHHH
Confidence 3345667888889999988888777776666544
No 90
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=21.75 E-value=3.8e+02 Score=23.65 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=49.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhcc
Q 041429 263 KQQNINVRGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMES 332 (408)
Q Consensus 263 ~~~s~~l~a~~~h~~~D~l~sv~vli~~~~~~~~~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~ 332 (408)
+.....+....-...+|.+....+..+...... ..+++-.+..++-++++++.+++++|+......+.
T Consensus 21 ~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~--~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~~~~ 88 (191)
T PF01810_consen 21 KGFKAGLPVALGAALGDLIYILLAVFGLSALLK--SSPWLFMILKLLGALYLLYLGYKLLRSKFSSKSST 88 (191)
T ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHHHhcccCcchhh
Confidence 344556667777788888777666655444322 37788899999999999999999999877665543
No 91
>PF15220 HILPDA: Hypoxia-inducible lipid droplet-associated
Probab=21.67 E-value=3e+02 Score=19.93 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhhcCCcccc
Q 041429 130 VSMQLIWLLAGIL-VYEAIVRLINETSEVN 158 (408)
Q Consensus 130 ~~~~~L~~~~~~i-~~ea~~~l~~~~~~~~ 158 (408)
+.++.+.++++|+ +.|+++.+++.+.+..
T Consensus 9 llgvvltllsifvrlmesle~llesp~pgs 38 (63)
T PF15220_consen 9 LLGVVLTLLSIFVRLMESLEGLLESPSPGS 38 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3455555666665 7999999997543333
No 92
>PF04865 Baseplate_J: Baseplate J-like protein; InterPro: IPR006949 The temperate bacteriophage P2 has four defined tail genes: V, J, W and I. Their order is the late gene promoter, VWJI, followed by the tail fibre genes H and G and then a transcription terminator. BAP V protein is the small spike at the tip of the tail and basal plate assembly protein J lies at the edge of the baseplate []. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred.
Probab=21.37 E-value=4.8e+02 Score=24.13 Aligned_cols=54 Identities=22% Similarity=0.196 Sum_probs=35.5
Q ss_pred ccHHHHHHHHHcC-cCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHH
Q 041429 337 IDATKLEKGILEM-EEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYI 393 (408)
Q Consensus 337 ~~~~~i~~~l~~~-~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l 393 (408)
-..+.++..+++. |||.++.-+.-|. ++|. +.+.|.-+.+.-...++++++++|
T Consensus 119 gt~~dy~~~a~~~~~gV~~v~v~~~~~-~~G~--V~v~v~~~~g~~~~~l~~~V~~~i 173 (243)
T PF04865_consen 119 GTADDYEYWALSVSPGVADVKVYPNWN-GPGT--VDVYVLGANGAPSQELLAAVQAYI 173 (243)
T ss_pred CCHHHHHHHHHHhCCCceEEEEecCCC-CCCE--EEEEEccCCCCCCHHHHHHHHHHh
Confidence 3556777778887 9987777766664 3443 333333333345677889999999
No 93
>PF08803 ydhR: Putative mono-oxygenase ydhR; InterPro: IPR014910 YdhR is a homodimeric protein that comprises of a central four-stranded beta sheet and four surrounding alpha helices []. It shows structural homology to the ActVA-Orf6 and YgiN proteins which indicates it could be a mono-oxygenase. ; PDB: 1WD6_B 2HIQ_B 2ASY_B.
Probab=20.66 E-value=4.6e+02 Score=21.34 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=39.4
Q ss_pred HHHHHHHcCcCccceeeeEEEEeeCCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEEe
Q 041429 341 KLEKGILEMEEVVAIHELHIWAITVGK-VLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQI 406 (408)
Q Consensus 341 ~i~~~l~~~~gV~~v~~l~~~~~~~~~-~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIqi 406 (408)
.+.+.+.+.||. -.++|...... -..-+.+ ++.+++++..+++-..++ +.+|+.+|++++
T Consensus 22 ~LA~sI~~ePGl----iwKiWten~~t~eaGGiYL-Fe~e~~A~aY~~~h~aRl-~~~Gv~~i~~ki 82 (97)
T PF08803_consen 22 DLAESINQEPGL----IWKIWTENEETGEAGGIYL-FEDEASAEAYLEMHTARL-AAFGVTEIRGKI 82 (97)
T ss_dssp HHHHHHTTSTTE----EEEEEEEETTTTEEEEEEE-ESSHHHHHHHHHHHHHHH-GGGTSS--EEEE
T ss_pred HHHHHHhhCCCe----EEEEEEecCCCCccceEEE-ECCHHHHHHHHHHHHHHH-HhcCccceEEEE
Confidence 344567778884 46889775444 3443333 455567888888888888 577999998875
No 94
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=20.66 E-value=2e+02 Score=18.91 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccch
Q 041429 58 LLTAVALCVVFMSIEVFGGIKANS 81 (408)
Q Consensus 58 l~~~l~~~~~~~~~~~~~g~~s~S 81 (408)
+.+.....+++.+.-+++|+++|-
T Consensus 4 LK~~Vy~vV~ffv~LFifGflsnD 27 (36)
T PF02532_consen 4 LKIFVYTVVIFFVSLFIFGFLSND 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeehhhHHHHHHHHhccccCCC
Confidence 445556667777777888887763
No 95
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=20.63 E-value=4.4e+02 Score=20.96 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=43.4
Q ss_pred CcccHHHHHHHHHc-CcCccceeeeEEEEeeCCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHhhCCCceEEEE
Q 041429 335 REIDATKLEKGILE-MEEVVAIHELHIWAITVGKVLLACHVKIQPE-ANADLVLNNVIDYIRREYNIIHVTIQ 405 (408)
Q Consensus 335 ~~~~~~~i~~~l~~-~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~-~~~~~i~~~i~~~l~~~~~v~~vtIq 405 (408)
++.+.+++++.+++ .+.-..+.....--++.|-..+.+.+.++.+ ...+++ ++.|.+--+|++|.|.
T Consensus 15 ~e~Dl~~L~~~ik~~~~~g~~~~~~~~ePIaFGLkaL~i~~vv~D~~~~td~l----ee~i~~~e~Vqsvei~ 83 (88)
T PRK00435 15 PEVDLDELKEKIKEVLPEGYKINGIEEEPIAFGLKALKLYVIMPDEEGGTEPV----EEAFANVEGVESVEVE 83 (88)
T ss_pred CCcCHHHHHHHHHHhCcCCcEEeEeEEEEeeccceeEEEEEEEEcCCcCcHHH----HHHHhccCCCcEEEEE
Confidence 44577888887865 4444556677777778888788888888766 344444 4445433367777663
No 96
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=20.39 E-value=7.8e+02 Score=23.75 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccchHHH---HHhhHHHHHhHHHHHHHHHHHHHhcCC
Q 041429 55 MRKLLTAVALCVVFMSIEVFGGIKANSLAI---LTDAAHLLSDVAAFAISLFSLWAAGWE 111 (408)
Q Consensus 55 ~~~l~~~l~~~~~~~~~~~~~g~~s~S~aL---laDa~hsl~D~~s~~~~l~a~~~s~~~ 111 (408)
.+.+.....+.+++.++|.+.|.++=-..+ ..-++|.+.-++......+.....+++
T Consensus 96 ~~~~~~~~~~~~~l~~~Q~~lG~~~V~~~l~~~~~~~~Hl~~a~~~~~~l~~~~~~~~~~ 155 (302)
T PF02628_consen 96 RRRLRWLALLALVLVILQGLLGAWTVLSGLVSPYVVTLHLLLALLIFALLVWLALRARRP 155 (302)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 466777778888888999888877555544 557889998888888888877777666
No 97
>PRK09304 arginine exporter protein; Provisional
Probab=20.31 E-value=4.7e+02 Score=23.77 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHHHHhHHHHHHHH
Q 041429 269 VRGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLGTTFNMLRNI 325 (408)
Q Consensus 269 l~a~~~h~~~D~l~sv~vli~~~~~~~~~~~~~~Dpv~si~is~~il~~~~~l~~~s 325 (408)
+....-...+|.+-...+..+...... .++++-.+.-++-++++++.+++++|+.
T Consensus 37 ~~~~~Gi~~g~~~~~~la~~Gl~~Ll~--~~p~~~~~l~~~Ga~YLlyLg~~~~rs~ 91 (207)
T PRK09304 37 LMIALLCALSDLVLICAGIFGGSALLM--QSPWLLALVTWGGVAFLLWYGFGAFKTA 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555677787777766666544322 4778999999999999999999999975
No 98
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=20.11 E-value=4e+02 Score=22.29 Aligned_cols=45 Identities=4% Similarity=0.276 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC--CcccchhHHHHHHHHHH
Q 041429 126 LGALVSMQLIWLLAGILVYEAIVRLINE--TSEVNGFLMFLVAAFGL 170 (408)
Q Consensus 126 l~~l~~~~~L~~~~~~i~~ea~~~l~~~--~~~~~~~~~~~~~~~~l 170 (408)
.=+.+.+++|++++..++.-++.-++.. ......+..++++++.+
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~f 87 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCF 87 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHH
Confidence 3344455556666666555555555443 22333344444454444
Done!