Query 041429
Match_columns 408
No_of_seqs 161 out of 1544
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 11:31:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h90_A Ferrous-iron efflux pum 100.0 6.3E-53 2.2E-57 408.4 17.8 274 55-408 3-279 (283)
2 3j1z_P YIIP, cation efflux fam 100.0 4.6E-53 1.6E-57 413.5 14.5 274 55-408 12-288 (306)
3 3byp_A CZRB protein; membrane 99.3 4.1E-12 1.4E-16 101.8 9.0 80 328-408 1-85 (94)
4 2zzt_A Putative uncharacterize 99.2 1.8E-11 6E-16 100.8 6.9 78 330-408 1-84 (107)
5 3j1z_P YIIP, cation efflux fam 97.0 0.00048 1.6E-08 66.5 4.3 91 57-155 122-212 (306)
6 3h90_A Ferrous-iron efflux pum 96.9 0.00043 1.5E-08 65.9 3.4 92 56-155 112-203 (283)
7 3cq1_A Putative uncharacterize 53.8 32 0.0011 26.7 6.4 50 355-407 33-82 (103)
8 1uwd_A Hypothetical protein TM 51.6 31 0.0011 26.7 6.0 42 366-407 42-83 (103)
9 3rze_A Histamine H1 receptor, 50.9 1.2E+02 0.004 28.8 11.4 25 158-182 11-35 (452)
10 3uon_A Human M2 muscarinic ace 46.5 1.4E+02 0.0047 28.5 11.2 22 161-182 29-50 (467)
11 3lno_A Putative uncharacterize 45.8 32 0.0011 27.0 5.3 42 366-407 44-86 (108)
12 3lax_A Phenylacetate-coenzyme 42.8 1.1E+02 0.0037 23.3 8.3 63 337-400 14-81 (109)
13 2rh1_A Beta-2-adrenergic recep 42.4 1.6E+02 0.0054 28.8 11.1 20 163-182 48-67 (500)
14 3vw7_A Proteinase-activated re 39.5 1.6E+02 0.0055 28.2 10.5 22 161-182 26-47 (484)
15 4dkl_A MU-type opioid receptor 39.3 1.9E+02 0.0064 27.4 10.9 22 161-182 23-44 (464)
16 2z73_A Rhodopsin; visual pigme 38.6 1.6E+02 0.0056 28.0 10.3 20 163-182 42-61 (448)
17 3eml_A Human adenosine A2A rec 37.3 1.7E+02 0.0058 27.9 10.2 22 161-182 27-48 (488)
18 2cvi_A 75AA long hypothetical 34.9 1.1E+02 0.0037 22.1 6.5 58 338-404 14-71 (83)
19 3gxs_A Phenylacetate-coenzyme 33.0 1.6E+02 0.0055 22.4 9.1 62 337-400 14-81 (109)
20 2zbc_A 83AA long hypothetical 32.6 35 0.0012 24.7 3.3 59 338-405 14-72 (83)
21 3pbl_A D(3) dopamine receptor, 31.5 2.8E+02 0.0097 26.3 10.8 23 160-182 43-65 (481)
22 2jsx_A Protein NAPD; TAT, proo 30.5 1.6E+02 0.0056 22.5 6.9 64 329-404 11-74 (95)
23 4eiy_A Adenosine receptor A2A/ 30.0 3E+02 0.01 25.7 10.6 22 161-182 37-58 (447)
24 3sn6_R Lysozyme, beta-2 adrene 29.8 1.9E+02 0.0065 28.3 9.3 22 161-182 188-209 (514)
25 3odu_A C-X-C chemokine recepto 29.3 2.8E+02 0.0096 26.5 10.3 22 161-182 54-75 (502)
26 2ks9_A Substance-P receptor; w 28.5 3.3E+02 0.011 24.6 10.7 20 163-182 40-59 (364)
27 4ea3_A Fusion protein of nocic 25.9 3.7E+02 0.013 25.4 10.4 22 161-182 131-152 (434)
28 1u19_A Rhodopsin; G protein-co 25.9 3.6E+02 0.012 24.1 11.0 20 163-182 46-65 (349)
29 2djw_A Probable transcriptiona 25.5 28 0.00096 26.1 1.7 57 338-403 14-70 (92)
30 2cg4_A Regulatory protein ASNC 25.2 60 0.002 26.6 3.8 59 338-405 81-139 (152)
31 3tuf_A Stage III sporulation p 22.8 40 0.0014 29.8 2.3 51 353-408 144-195 (197)
32 2jp3_A FXYD domain-containing 22.1 1.2E+02 0.0042 21.8 4.3 33 111-144 5-37 (67)
33 4amj_A Beta-1 adrenergic recep 21.2 2.9E+02 0.01 24.1 8.1 22 161-182 17-38 (315)
No 1
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=100.00 E-value=6.3e-53 Score=408.36 Aligned_cols=274 Identities=20% Similarity=0.272 Sum_probs=258.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHH
Q 041429 55 MRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQL 134 (408)
Q Consensus 55 ~~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~~ 134 (408)
+|.+++++++|++++++|+++|+++||+||++||+||+.|+++.++++++.++++||||++|||||+|+|++++++++++
T Consensus 3 ~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~ 82 (283)
T 3h90_A 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMF 82 (283)
T ss_dssp CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccccCCCCC
Q 041429 135 IWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGHGHDHHDHGMGHRHGSRITTDHHEE 214 (408)
Q Consensus 135 L~~~~~~i~~ea~~~l~~~~~~~~~~~~~~~~~~~l~vn~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (408)
|++++++++++|++++++|.+...+.++++++++++++|+++++++++
T Consensus 83 l~~~~~~i~~eai~~l~~~~~~~~~~~~l~v~~~s~~v~~~~~~~~~~-------------------------------- 130 (283)
T 3h90_A 83 ISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRW-------------------------------- 130 (283)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCCCCCCCCTHHHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Confidence 999999999999999999887777777899999999999999998875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCccccCCccccCCCCCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041429 215 HPRGEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAIIW 294 (408)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~~~~ 294 (408)
..++.+|++++++++|++.|+++|++++++.++.+
T Consensus 131 ---------------------------------------------~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~~ 165 (283)
T 3h90_A 131 ---------------------------------------------VVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSW 165 (283)
T ss_dssp ---------------------------------------------HHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCSCS
T ss_pred ---------------------------------------------HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999877743
Q ss_pred hccCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCcccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEE
Q 041429 295 YKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHV 374 (408)
Q Consensus 295 ~~~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v 374 (408)
+ +|+|+||+++++++++|++.+++++|++...|+|++|++++.+++++.+++.|||.+++++|+|+. +.++.+++||
T Consensus 166 ~--g~~~~D~i~~i~ia~~i~~~~~~l~~~s~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~l~~~~~-G~~~~v~~hv 242 (283)
T 3h90_A 166 Y--GWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQS-GPTRFIQIHL 242 (283)
T ss_dssp T--TSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSSSCSEEEEEEEEEE-TTEEEEEEEE
T ss_pred h--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCcccceeeEEEEE-CCcEEEEEEE
Confidence 3 899999999999999999999999999999999999999999999999999999999999999987 4678899999
Q ss_pred EeCCCC---CHHHHHHHHHHHHHhhCCCceEEEEecC
Q 041429 375 KIQPEA---NADLVLNNVIDYIRREYNIIHVTIQIER 408 (408)
Q Consensus 375 ~v~~~~---~~~~i~~~i~~~l~~~~~v~~vtIqie~ 408 (408)
.++++. +.+++.++++++++++++..++|||+||
T Consensus 243 ~v~~~~~~~~~~~i~~~i~~~l~~~~~~~~v~ih~ep 279 (283)
T 3h90_A 243 EMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQDP 279 (283)
T ss_dssp ECCTTCBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEC
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 999984 7899999999999999988999999997
No 2
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=100.00 E-value=4.6e-53 Score=413.54 Aligned_cols=274 Identities=17% Similarity=0.228 Sum_probs=258.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHH
Q 041429 55 MRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQL 134 (408)
Q Consensus 55 ~~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~~ 134 (408)
++..++++++|++++++|+++|+++||+||+|||+||++|+++.++++++.++++||||++|||||+|+|++++++++++
T Consensus 12 r~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~~~~ 91 (306)
T 3j1z_P 12 KLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQSAF 91 (306)
T ss_dssp STTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHHHHH
Confidence 46688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccccCCCCC
Q 041429 135 IWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGHGHDHHDHGMGHRHGSRITTDHHEE 214 (408)
Q Consensus 135 L~~~~~~i~~ea~~~l~~~~~~~~~~~~~~~~~~~l~vn~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (408)
|++++++++++|+++|++|.+...+.++++++++++++|+.++++.++
T Consensus 92 l~~~~~~i~~eai~~l~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------------------------------- 139 (306)
T 3j1z_P 92 IMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKR-------------------------------- 139 (306)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCGGGTTCCHHHHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHHhhhheecCCCccccccchhhhhhHhhhhHHHHHHHHH--------------------------------
Confidence 999999999999999999988888888899999999999999888874
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCccccCCccccCCCCCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041429 215 HPRGEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAIIW 294 (408)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~~~~ 294 (408)
..++.+|.+++++++|.++|+++|+++++++++.+
T Consensus 140 ---------------------------------------------~~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~ 174 (306)
T 3j1z_P 140 ---------------------------------------------ALAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQ 174 (306)
T ss_dssp ---------------------------------------------HHTTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCC
T ss_pred ---------------------------------------------hccccCCHHHHHHHHhhcchhhhhhHHHHHHHHHH
Confidence 34567899999999999999999999999877765
Q ss_pred hccCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCcccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEE
Q 041429 295 YKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHV 374 (408)
Q Consensus 295 ~~~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v 374 (408)
+ +|+|+||+++++++++|++.+++++|++...|||++|++++.+++++.+++.|||.+++++|+|+. +.++.+++||
T Consensus 175 ~--g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~~~~~~~~I~~~i~~~~~V~~vh~l~~~~~-G~~~~v~~hi 251 (306)
T 3j1z_P 175 Y--GWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQA-GKTVFIQFHL 251 (306)
T ss_dssp S--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSTTBCCCCCBCCEEE-TTEEEEEECC
T ss_pred h--CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhcCCCcceeeeEEEEEE-CCcEEEEEEE
Confidence 4 899999999999999999999999999999999999999999999999999999999999999997 4678899999
Q ss_pred EeCCCC---CHHHHHHHHHHHHHhhCCCceEEEEecC
Q 041429 375 KIQPEA---NADLVLNNVIDYIRREYNIIHVTIQIER 408 (408)
Q Consensus 375 ~v~~~~---~~~~i~~~i~~~l~~~~~v~~vtIqie~ 408 (408)
++|++. ++++|.+++++++++++++.++|||+||
T Consensus 252 ~v~~~~sl~eah~i~~~ie~~l~~~~~~~~v~IhveP 288 (306)
T 3j1z_P 252 ELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDP 288 (306)
T ss_dssp EECTTSBHHHHHHHHHHHHHHHHHHSTTCEEEECCEE
T ss_pred EECCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 999994 7899999999999999999999999997
No 3
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.33 E-value=4.1e-12 Score=101.81 Aligned_cols=80 Identities=14% Similarity=0.242 Sum_probs=69.2
Q ss_pred HhhccCCCcccHHHHHHHHHcC--cCccceeeeEEEEeeCCeEEEEEEEEeCCCC---CHHHHHHHHHHHHHhhCCCceE
Q 041429 328 VLMESTPREIDATKLEKGILEM--EEVVAIHELHIWAITVGKVLLACHVKIQPEA---NADLVLNNVIDYIRREYNIIHV 402 (408)
Q Consensus 328 ~Ll~~~p~~~~~~~i~~~l~~~--~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~---~~~~i~~~i~~~l~~~~~v~~v 402 (408)
.|||++|++++.+++++.+.+. |||.+|+++|+|+. ++.+++++||.++++. +++++.+++++.|+++|++.++
T Consensus 1 ~Lld~~~~~~~~~~I~~~l~~~~~~gV~~vh~l~~~~~-g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~~v 79 (94)
T 3byp_A 1 GLMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRA-GPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQA 79 (94)
T ss_dssp -----CCCHHHHHHHHHHHHHHHTTTCSEEEEEEEEEE-TTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred CCcCCCCCHHHHHHHHHHHHhcCCCCceeeeeEEEEEE-CCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 4899999999999999999999 99999999999997 4678999999999874 6789999999999999987899
Q ss_pred EEEecC
Q 041429 403 TIQIER 408 (408)
Q Consensus 403 tIqie~ 408 (408)
|||+||
T Consensus 80 tIh~ep 85 (94)
T 3byp_A 80 TIHVEP 85 (94)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 999985
No 4
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.21 E-value=1.8e-11 Score=100.75 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=68.0
Q ss_pred hccCCCcc--cHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCC---CHHHHHHHHHHHHHhhCC-CceEE
Q 041429 330 MESTPREI--DATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEA---NADLVLNNVIDYIRREYN-IIHVT 403 (408)
Q Consensus 330 l~~~p~~~--~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~---~~~~i~~~i~~~l~~~~~-v~~vt 403 (408)
||++|+++ +.++|++.++++|||.+|+++|+|.. ++.+++++||.++++. +++++++++++.|++.++ +.++|
T Consensus 1 md~~~~~~~~~~~~I~~~l~~~~gV~~vh~lr~r~~-G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vt 79 (107)
T 2zzt_A 1 MDGMKRTELDMYDDIFAVLERFPNVHNPHRVRIRRV-GTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVT 79 (107)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSSCEEEEEEEEECS-CC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred CCCCCCccHHHHHHHHHHHHcCCCccccEEEEEEEE-CCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEE
Confidence 67888888 99999999999999999999999974 5678899999999874 678999999999999998 89999
Q ss_pred EEecC
Q 041429 404 IQIER 408 (408)
Q Consensus 404 Iqie~ 408 (408)
||+||
T Consensus 80 IhvEp 84 (107)
T 2zzt_A 80 IHVEP 84 (107)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99986
No 5
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=96.97 E-value=0.00048 Score=66.47 Aligned_cols=91 Identities=23% Similarity=0.212 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHH
Q 041429 57 KLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQLIW 136 (408)
Q Consensus 57 ~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~~L~ 136 (408)
...++++.++++.....-.+--.+|.++.||+.|.+.|+++.+..+++...+. |||..++++++++.+++++
T Consensus 122 v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~--------~g~~~~Dpi~ai~Ia~~I~ 193 (306)
T 3j1z_P 122 VSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQ--------YGWWWADGLFAVLIACYIG 193 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCC--------SSSCCCHHHHHHHHHHHHH
T ss_pred hhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhhHHHHHHHHHH--------hCcchhhhHHHHHHHHHHH
Confidence 34556666777777777777788999999999999999999988887765543 6888899999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCc
Q 041429 137 LLAGILVYEAIVRLINETS 155 (408)
Q Consensus 137 ~~~~~i~~ea~~~l~~~~~ 155 (408)
..++.++++++..|++..+
T Consensus 194 ~~~~~l~~~s~~~Ll~~~~ 212 (306)
T 3j1z_P 194 QQAFDLGYRSIQALLDREL 212 (306)
T ss_dssp HHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHhCccc
Confidence 9999999999999997543
No 6
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=96.91 E-value=0.00043 Score=65.88 Aligned_cols=92 Identities=25% Similarity=0.248 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHH
Q 041429 56 RKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQLI 135 (408)
Q Consensus 56 ~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~~L 135 (408)
....+++++|.+++....-.+-..+|.++.||+.|.+.|+++.+..+++...+ -+||..++++++++.++++
T Consensus 112 ~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~--------~~g~~~~D~i~~i~ia~~i 183 (283)
T 3h90_A 112 IVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLS--------WYGWHRADALFALGIGIYI 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCSC--------STTSCCSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCchHHHHHHHHHHHHHH
Confidence 45667788888888777777778899999999999999999998877765432 2588889999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCc
Q 041429 136 WLLAGILVYEAIVRLINETS 155 (408)
Q Consensus 136 ~~~~~~i~~ea~~~l~~~~~ 155 (408)
+..+..++++++..|++..+
T Consensus 184 ~~~~~~l~~~s~~~Ll~~~~ 203 (283)
T 3h90_A 184 LYSALRMGYEAVQSLLDRAL 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999997543
No 7
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=53.79 E-value=32 Score=26.68 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=32.0
Q ss_pred eeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEEec
Q 041429 355 IHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQIE 407 (408)
Q Consensus 355 v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIqie 407 (408)
|+++.+ .++++.+.+.+..+.-.-.+.+.+++++++++..|+..|.|.+.
T Consensus 33 V~~v~v---~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~ 82 (103)
T 3cq1_A 33 IYDLVV---EPPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVT 82 (103)
T ss_dssp EEEEEE---ETTEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEEC
T ss_pred eEEEEE---ECCEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEe
Confidence 344444 45654444444333334678889999999975568998888763
No 8
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=51.57 E-value=31 Score=26.71 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=29.8
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEEec
Q 041429 366 GKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQIE 407 (408)
Q Consensus 366 ~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIqie 407 (408)
+++.+.+.+..+.-.-.+.+.+++++++++..|+..|.|.+.
T Consensus 42 ~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~ 83 (103)
T 1uwd_A 42 NNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT 83 (103)
T ss_dssp CEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEe
Confidence 555555444444445788899999999975568998888763
No 9
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=50.90 E-value=1.2e+02 Score=28.82 Aligned_cols=25 Identities=4% Similarity=0.089 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhc
Q 041429 158 NGFLMFLVAAFGLVVNIIMALVLGH 182 (408)
Q Consensus 158 ~~~~~~~~~~~~l~vn~i~~~~~~~ 182 (408)
......++.++|++.|++..+.+.+
T Consensus 11 ~~~~~~~~~~~gi~gN~~vi~~~~~ 35 (452)
T 3rze_A 11 LVVVLSTICLVTVGLNLLVLYAVRS 35 (452)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667888999999988776654
No 10
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=46.48 E-value=1.4e+02 Score=28.47 Aligned_cols=22 Identities=9% Similarity=0.140 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 041429 161 LMFLVAAFGLVVNIIMALVLGH 182 (408)
Q Consensus 161 ~~~~~~~~~l~vn~i~~~~~~~ 182 (408)
...++.++|++.|++..+.+.+
T Consensus 29 ~~~~~~~~g~~gN~lvi~~~~~ 50 (467)
T 3uon_A 29 VAGSLSLVTIIGNILVMVSIKV 50 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHheeeeee
Confidence 3445678899999988777754
No 11
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=45.84 E-value=32 Score=27.00 Aligned_cols=42 Identities=5% Similarity=0.112 Sum_probs=31.0
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHH-HhhCCCceEEEEec
Q 041429 366 GKVLLACHVKIQPEANADLVLNNVIDYI-RREYNIIHVTIQIE 407 (408)
Q Consensus 366 ~~~~~~v~v~v~~~~~~~~i~~~i~~~l-~~~~~v~~vtIqie 407 (408)
+++.+++.+..+.-.....+.+++++++ ++..|+..|.|.+.
T Consensus 44 ~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l~ 86 (108)
T 3lno_A 44 NNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNVV 86 (108)
T ss_dssp CCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEEC
T ss_pred CeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence 6655555555555467888999999999 66668999988763
No 12
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=42.81 E-value=1.1e+02 Score=23.29 Aligned_cols=63 Identities=10% Similarity=0.095 Sum_probs=40.9
Q ss_pred ccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCC-----CHHHHHHHHHHHHHhhCCCc
Q 041429 337 IDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEA-----NADLVLNNVIDYIRREYNII 400 (408)
Q Consensus 337 ~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~-----~~~~i~~~i~~~l~~~~~v~ 400 (408)
.....|++.+.++|+|....-+-+-.- .+.-.+.+.|.+.+.. +...+.+++++.+.+.+++.
T Consensus 14 v~P~eIE~vl~~~p~v~~~~vv~v~~~-~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv~ 81 (109)
T 3lax_A 14 IFPIQIETILLQFKELGSDYLITLETA-ESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVT 81 (109)
T ss_dssp ECHHHHHHHHHTCTTEEEEEEEEEEEE-TTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ECHHHHHHHHHhCCCcccceEEEEecc-ccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCCc
Confidence 345788899999999877666655432 3333445556665542 24567778888887766654
No 13
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=42.36 E-value=1.6e+02 Score=28.84 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 041429 163 FLVAAFGLVVNIIMALVLGH 182 (408)
Q Consensus 163 ~~~~~~~l~vn~i~~~~~~~ 182 (408)
.++.++|++.|++..+.+.+
T Consensus 48 ~~i~~~gi~gN~lvi~~i~~ 67 (500)
T 2rh1_A 48 SLIVLAIVFGNVLVITAIAK 67 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34567888889877776653
No 14
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=39.46 E-value=1.6e+02 Score=28.16 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 041429 161 LMFLVAAFGLVVNIIMALVLGH 182 (408)
Q Consensus 161 ~~~~~~~~~l~vn~i~~~~~~~ 182 (408)
...++.++|++.|++..+.+.+
T Consensus 26 ~~~~i~~~~i~gN~lvi~~~~~ 47 (484)
T 3vw7_A 26 VYTGVFVVSLPLNIMAIVVFIL 47 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455778899999987766653
No 15
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=39.32 E-value=1.9e+02 Score=27.36 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 041429 161 LMFLVAAFGLVVNIIMALVLGH 182 (408)
Q Consensus 161 ~~~~~~~~~l~vn~i~~~~~~~ 182 (408)
...++.++|++.|++..+.+.+
T Consensus 23 ~~~~~~~~gi~gN~lvi~~~~~ 44 (464)
T 4dkl_A 23 LYSIVCVVGLFGNFLVMYVIVR 44 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHeehhhhh
Confidence 3445678899999987777754
No 16
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=38.58 E-value=1.6e+02 Score=28.01 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 041429 163 FLVAAFGLVVNIIMALVLGH 182 (408)
Q Consensus 163 ~~~~~~~l~vn~i~~~~~~~ 182 (408)
.+++++|++.|++..+.+.+
T Consensus 42 ~ii~i~gi~gN~lvi~vi~~ 61 (448)
T 2z73_A 42 GICGIIGCGGNGIVIYLFTK 61 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHhhhhhhh
Confidence 45677888999988777654
No 17
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=37.28 E-value=1.7e+02 Score=27.90 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 041429 161 LMFLVAAFGLVVNIIMALVLGH 182 (408)
Q Consensus 161 ~~~~~~~~~l~vn~i~~~~~~~ 182 (408)
..+++.++|++.|++..+.+.+
T Consensus 27 ~~~~i~~~gi~gN~lvi~~~~~ 48 (488)
T 3eml_A 27 VELAIAVLAILGNVLVCWAVWL 48 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhheee
Confidence 4456788999999988877754
No 18
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=34.87 E-value=1.1e+02 Score=22.15 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=33.0
Q ss_pred cHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEE
Q 041429 338 DATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTI 404 (408)
Q Consensus 338 ~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtI 404 (408)
..+++.+.+.+.|+|..++. ++ |.+.+-+.+.++...+.+++ +.+.+.+..||..+.-
T Consensus 14 ~~~~~~~~l~~~peV~e~~~-----vt-G~~D~ll~v~~~d~~~l~~~---i~~~l~~~~gV~~~~T 71 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEAYV-----VY-GEYDLIVKVETDTLKDLDQF---ITEKIRKMPEIQMTST 71 (83)
T ss_dssp CHHHHHHHHHTSTTEEEEEE-----CB-SSCSEEEEEEESSHHHHHHH---HHTTGGGCTTEEEEEE
T ss_pred CHHHHHHHHhCCCCeeEEEE-----Ec-ccCCEEEEEEECCHHHHHHH---HHHHhccCCCEeEEEE
Confidence 35788999999998866643 33 33333345555443344443 3345554446765544
No 19
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=33.01 E-value=1.6e+02 Score=22.41 Aligned_cols=62 Identities=10% Similarity=0.136 Sum_probs=40.6
Q ss_pred ccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCC------CHHHHHHHHHHHHHhhCCCc
Q 041429 337 IDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEA------NADLVLNNVIDYIRREYNII 400 (408)
Q Consensus 337 ~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~------~~~~i~~~i~~~l~~~~~v~ 400 (408)
.....|++.+.++|+|.....+-+.. ..+.=.+.+.+++ ++. +..++.+++++.+.+.+++.
T Consensus 14 v~P~eIE~~l~~~p~v~~~~~v~v~~-~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 81 (109)
T 3gxs_A 14 IFPIQIETILLQFKELGSDYLITLET-AESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEILVT 81 (109)
T ss_dssp ECHHHHHHHHHTCTTEEEEEEEEEEE-ETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ECHHHHHHHHHhCCCcCCcEEEEEEc-CCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhCCc
Confidence 34578899999999987665555543 2333234455666 332 35678888999987777765
No 20
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=32.58 E-value=35 Score=24.71 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=33.4
Q ss_pred cHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEE
Q 041429 338 DATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQ 405 (408)
Q Consensus 338 ~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIq 405 (408)
..+.+.+.+.+.|+|..++. ++ |.+.+-+.+.++...+.+++ +.+.+.+..||..++-.
T Consensus 14 ~~~~~~~~l~~~peV~~~~~-----vt-G~~d~l~~v~~~d~~~l~~~---~~~~l~~~~gV~~~~t~ 72 (83)
T 2zbc_A 14 GEDEVFERLKSMSEVTEVHV-----VY-GVYDIVVKVEADSMDKLKDF---VTNTIRKLPKVRSTLTM 72 (83)
T ss_dssp CHHHHHHHHTTCTTEEEEEE-----CS-SSCSEEEEEECSSHHHHHHH---HHHTGGGSTTEEEEEEE
T ss_pred CHHHHHHHHhCCCCeEEEEE-----Ee-ccCCEEEEEEECCHHHHHHH---HHHHhcCCCCEeEEEEE
Confidence 35788899999998765543 33 33333345555443344333 34455545577666544
No 21
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=31.46 E-value=2.8e+02 Score=26.30 Aligned_cols=23 Identities=4% Similarity=-0.078 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Q 041429 160 FLMFLVAAFGLVVNIIMALVLGH 182 (408)
Q Consensus 160 ~~~~~~~~~~l~vn~i~~~~~~~ 182 (408)
....++.++|++.|++..+.+.+
T Consensus 43 ~~~~~~~~~g~~gN~lvi~~~~~ 65 (481)
T 3pbl_A 43 LSYCALILAIVFGNGLVCMAVLK 65 (481)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHhhh
Confidence 44566788999999988777754
No 22
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=30.52 E-value=1.6e+02 Score=22.48 Aligned_cols=64 Identities=5% Similarity=0.289 Sum_probs=40.2
Q ss_pred hhccCCCcccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEE
Q 041429 329 LMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTI 404 (408)
Q Consensus 329 Ll~~~p~~~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtI 404 (408)
|++..|. ..+.+++.|.++||| . ++.-.-..|++++.+. ..+.+++.+.+ +.|++--||..++.
T Consensus 11 vV~~~p~--~~~~V~~~L~~ipgv-E---i~~~~~~~GkiVV~iE-----a~~~~~l~~~i-~~I~~i~GVlst~l 74 (95)
T 2jsx_A 11 VVQAKSE--RISDISTQLNAFPGC-E---VAVSDAPSGQLIVVVE-----AEDSETLIQTI-ESVRNVEGVLAVSL 74 (95)
T ss_dssp EEEECTT--SHHHHHHHHTTSTTE-E---EEEEETTTTEEEEEEE-----ESSHHHHHHHH-HHHTTSTTEEEEEE
T ss_pred EEEECCC--CHHHHHHHHHCCCCe-E---EEEecCCCCCEEEEEE-----eCCHHHHHHHH-HHHhcCCCccEEeE
Confidence 4555554 468999999999987 3 3443212467665433 34566666666 66766668877764
No 23
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=30.00 E-value=3e+02 Score=25.71 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 041429 161 LMFLVAAFGLVVNIIMALVLGH 182 (408)
Q Consensus 161 ~~~~~~~~~l~vn~i~~~~~~~ 182 (408)
..+++.++|++.|++..+.+.+
T Consensus 37 i~~~i~~~gi~gN~~vl~~~~~ 58 (447)
T 4eiy_A 37 VELAIAVLAILGNVLVCWAVWL 58 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678899999988777653
No 24
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=29.81 E-value=1.9e+02 Score=28.31 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 041429 161 LMFLVAAFGLVVNIIMALVLGH 182 (408)
Q Consensus 161 ~~~~~~~~~l~vn~i~~~~~~~ 182 (408)
...++.++|++.|.+..+.+.+
T Consensus 188 ~~~ii~~~gi~gN~lvi~vi~~ 209 (514)
T 3sn6_R 188 VMSLIVLAIVFGNVLVITAIAK 209 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhhhheec
Confidence 3456778899999988776653
No 25
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=29.31 E-value=2.8e+02 Score=26.52 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 041429 161 LMFLVAAFGLVVNIIMALVLGH 182 (408)
Q Consensus 161 ~~~~~~~~~l~vn~i~~~~~~~ 182 (408)
...++.++|++.|+++.+.+.+
T Consensus 54 ~~~~i~~~g~~gN~lvi~~~~~ 75 (502)
T 3odu_A 54 IYSIIFLTGIVGNGLVILVMGY 75 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445678899999988877764
No 26
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=28.53 E-value=3.3e+02 Score=24.63 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 041429 163 FLVAAFGLVVNIIMALVLGH 182 (408)
Q Consensus 163 ~~~~~~~l~vn~i~~~~~~~ 182 (408)
.++.++|++.|.+..+.+.+
T Consensus 40 ~~i~~~gi~gN~lvi~vi~~ 59 (364)
T 2ks9_A 40 TVIVVTSVVGNVVVMWIILA 59 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34667888999887776653
No 27
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=25.91 E-value=3.7e+02 Score=25.36 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 041429 161 LMFLVAAFGLVVNIIMALVLGH 182 (408)
Q Consensus 161 ~~~~~~~~~l~vn~i~~~~~~~ 182 (408)
..+++.++|++.|++..+.+.+
T Consensus 131 ~~~~i~~~gi~gN~lvi~~i~~ 152 (434)
T 4ea3_A 131 LYLAVCVGGLLGNCLVMYVILR 152 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHeeeeeee
Confidence 3445677899999987776654
No 28
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=25.90 E-value=3.6e+02 Score=24.09 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 041429 163 FLVAAFGLVVNIIMALVLGH 182 (408)
Q Consensus 163 ~~~~~~~l~vn~i~~~~~~~ 182 (408)
.++.++|++.|.+..+.+.+
T Consensus 46 ~~i~~~gi~gN~lvi~~i~~ 65 (349)
T 1u19_A 46 FLLIMLGFPINFLTLYVTVQ 65 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHheEeehhh
Confidence 45677888999887777653
No 29
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=25.51 E-value=28 Score=26.08 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=33.4
Q ss_pred cHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEE
Q 041429 338 DATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVT 403 (408)
Q Consensus 338 ~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vt 403 (408)
..+.+.+.+.+.|+|..++.+ + |.+.+-+++.++...+.++++ .+.+.+..||..+.
T Consensus 14 ~~~~~~~~l~~~peV~~~~~v-----t-G~~D~ll~v~~~d~~~l~~~l---~~~l~~~~gV~~~~ 70 (92)
T 2djw_A 14 RVQALGEAIAELPQVAEVYSV-----T-GPYDLVALVRLKDVEELDDVV---TQGILSLEGVERTE 70 (92)
T ss_dssp GHHHHHHHHTTSTTEEEEEEE-----S-SSSSEEEEEEESSGGGHHHHC---CCCCTTSTTEEEEE
T ss_pred CHHHHHHHHhcCCCeEEEEEe-----e-cCCCEEEEEEECCHHHHHHHH---HHhcccCCCEeEEE
Confidence 467888999999988665433 3 444444566666555655543 22333334565544
No 30
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=25.19 E-value=60 Score=26.59 Aligned_cols=59 Identities=17% Similarity=0.094 Sum_probs=34.5
Q ss_pred cHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEE
Q 041429 338 DATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQ 405 (408)
Q Consensus 338 ~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIq 405 (408)
..+.+.+.+.++|+|..++.+ + |.+.+-+.|.++...+.+++ +.+.+.+..||..+...
T Consensus 81 ~~~~~~~~l~~~peV~~~~~v-----t-G~~d~~~~v~~~d~~~l~~~---l~~~l~~~~gV~~~~t~ 139 (152)
T 2cg4_A 81 DYPSALAKLESLDEVTEAYYT-----T-GHYSIFIKVMCRSIDALQHV---LINKIQTIDEIQSTETL 139 (152)
T ss_dssp GHHHHHHHHHTCTTEEEEEEE-----S-SSCSEEEEEEESCHHHHHHH---HHHTTTTSTTEEEEEEE
T ss_pred CHHHHHHHHhCCcCeEEEEEE-----e-cccCEEEEEEECCHHHHHHH---HHHHhhcCCCeeEEEEE
Confidence 567889999999988666543 3 44434445555443333333 44555545577665543
No 31
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=22.84 E-value=40 Score=29.76 Aligned_cols=51 Identities=12% Similarity=0.256 Sum_probs=33.4
Q ss_pred cceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCC-ceEEEEecC
Q 041429 353 VAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNI-IHVTIQIER 408 (408)
Q Consensus 353 ~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v-~~vtIqie~ 408 (408)
.++.+.-++ +.++.+ .|.|..+.-...-..+|++.+.+..|+ .+|+||++|
T Consensus 144 KGF~DAVV~-i~dd~V----~VVVka~~Ls~~eaaqI~DIV~r~tgv~~dV~Vqf~p 195 (197)
T 3tuf_A 144 QGYEDALVN-AEGDKI----NITVKSDKHSKSKATAIIDLVAKEIKTMKDVAVTFEP 195 (197)
T ss_dssp TTCSCEEEE-CSSSEE----EEEEECSCCCHHHHHHHHHTSCHHHHTTSEEEEEEEC
T ss_pred CCCCceEEE-ecCCEE----EEEEeCCCCCHHHHHHHHHHHHHhhCCCCceEEEeee
Confidence 467777776 455543 344445544444566777877777787 779999876
No 32
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=22.14 E-value=1.2e+02 Score=21.82 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=20.4
Q ss_pred CCCCCCccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 041429 111 ESNPRQSYGFFRVEILGALVSMQLIWLLAGILVY 144 (408)
Q Consensus 111 ~~~~~~p~G~~R~E~l~~l~~~~~L~~~~~~i~~ 144 (408)
..++.|.|-|.++.. ++|+.+.+|+++++.++.
T Consensus 5 ~e~dpF~YDY~tLRi-gGLifA~vLfi~GI~iil 37 (67)
T 2jp3_A 5 DKGSPFYYDWESLQL-GGLIFGGLLCIAGIALAL 37 (67)
T ss_dssp STTSGGGGGGHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcccchHHhee-cchhhHHHHHHHHHHHHH
Confidence 345566777776654 556666666666666543
No 33
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=21.22 E-value=2.9e+02 Score=24.14 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 041429 161 LMFLVAAFGLVVNIIMALVLGH 182 (408)
Q Consensus 161 ~~~~~~~~~l~vn~i~~~~~~~ 182 (408)
...++.++|++.|.+..+.+.+
T Consensus 17 ~~~~~~~~gi~gN~lvi~~i~~ 38 (315)
T 4amj_A 17 LMALVVLLIVAGNVLVIAAIGS 38 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHhhh
Confidence 4456778899999988777754
Done!