Query 041429
Match_columns 408
No_of_seqs 161 out of 1544
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 11:31:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041429.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041429hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qfia2 f.59.1.1 (A:5-208) Fer 100.0 8.4E-38 6.2E-42 286.2 -29.9 200 54-332 5-204 (204)
2 d2qfia1 d.52.9.1 (A:209-290) F 99.0 1.1E-11 7.8E-16 95.2 -2.7 74 334-408 2-78 (82)
3 d3bypa1 d.52.9.1 (A:6-87) Puta 98.9 1.8E-09 1.3E-13 82.4 8.3 73 335-408 3-80 (82)
4 d2qfia2 f.59.1.1 (A:5-208) Fer 81.4 0.00073 5.3E-08 58.9 -15.2 85 60-152 119-203 (204)
5 d2cu6a1 d.52.8.2 (A:6-96) Hypo 70.1 5.1 0.00037 29.0 6.3 44 363-406 33-76 (91)
6 d1uwda_ d.52.8.2 (A:) Hypothet 60.5 9.3 0.00067 28.2 6.2 41 366-406 41-81 (102)
7 d1iwga1 d.58.44.1 (A:38-134) M 54.7 3.8 0.00028 30.1 2.9 52 339-395 25-76 (97)
8 d2vv5a2 d.58.43.1 (A:180-280) 47.6 31 0.0023 24.3 7.3 68 340-408 24-100 (101)
9 d2cyya2 d.58.4.2 (A:65-150) Pu 36.4 20 0.0014 24.8 4.4 58 338-405 15-72 (86)
10 d2cg4a2 d.58.4.2 (A:67-152) Re 35.5 16 0.0012 25.5 3.7 59 336-403 13-71 (86)
11 d1i1ga2 d.58.4.2 (A:62-141) Lp 34.2 11 0.00082 25.8 2.6 59 337-404 14-72 (80)
12 d1u19a_ f.13.1.2 (A:) Rhodopsi 33.2 1.3E+02 0.0093 25.0 10.9 21 162-182 44-64 (348)
13 d2cfxa2 d.58.4.2 (A:64-140) Tr 28.1 18 0.0013 24.6 2.7 45 337-387 13-57 (77)
14 d2axti1 f.23.37.1 (I:1-35) Pho 27.1 37 0.0027 19.6 3.4 24 58-81 4-27 (35)
15 d1fftb2 f.17.2.1 (B:27-117) Cy 25.3 28 0.002 24.7 3.5 39 104-142 40-81 (91)
16 d1v54b2 f.17.2.1 (B:1-90) Mito 22.1 1.2E+02 0.0087 21.1 8.0 32 109-140 47-78 (90)
No 1
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]}
Probab=99.97 E-value=8.4e-38 Score=286.16 Aligned_cols=200 Identities=22% Similarity=0.304 Sum_probs=184.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHH
Q 041429 54 SMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQ 133 (408)
Q Consensus 54 ~~~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~ 133 (408)
.+|.+++++++|++++++|+++|+++||++|++|++|++.|+++.++.+++.+.++||||++|||||+|+|+++++++++
T Consensus 5 ~~r~~~~~~~~n~~l~i~~~~~~~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~ 84 (204)
T d2qfia2 5 VSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSM 84 (204)
T ss_dssp SSTTSHHHHGGGTTTTTBTTBCCCCTTSSCCCCCCCTTHHHHHHHHHHHHHHTTSSSSCSTTSSCSCCTHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccCCcchhHHHHHHHHHHHH
Confidence 34889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccccCCCC
Q 041429 134 LIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGHGHDHHDHGMGHRHGSRITTDHHE 213 (408)
Q Consensus 134 ~L~~~~~~i~~ea~~~l~~~~~~~~~~~~~~~~~~~l~vn~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (408)
+++++++++++++++++++|++..++.+++++++++++++.+++.+.++
T Consensus 85 ~l~~~~~~~~~~si~~l~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~------------------------------- 133 (204)
T d2qfia2 85 FISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRW------------------------------- 133 (204)
T ss_dssp TTSSSTTGGGSSCTTSSTTTSSSSTTTSCCCCCGGGSSCGGGGTTTHHH-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Confidence 9999999999999999999988878888888888888888877766653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCccccCCccccCCCCCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041429 214 EHPRGEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAII 293 (408)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~~~ 293 (408)
..++.+|+++++++.|++.|+++|++++++.++.
T Consensus 134 ----------------------------------------------~~~~~~s~~~~a~~~~~~~D~~~s~~vii~~~~~ 167 (204)
T d2qfia2 134 ----------------------------------------------VVRRTQSQAVRADMLHYQSDVMMNGAILLALGLS 167 (204)
T ss_dssp ----------------------------------------------HGGGCCSTTSGGGGGGHHHHTCCSSTTCCCTTSS
T ss_pred ----------------------------------------------hhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999886665
Q ss_pred HhccCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhcc
Q 041429 294 WYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMES 332 (408)
Q Consensus 294 ~~~~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~ 332 (408)
++ +|+|+||++++++++++++.+++++|++.+.|+|+
T Consensus 168 ~~--~~~~~D~i~aiii~~~i~~~~~~~~~~~~~~Lld~ 204 (204)
T d2qfia2 168 WY--GWHRADALFALGIGIYILYSALRMGYEAVQSLLDR 204 (204)
T ss_dssp CS--STTSSSSSSHHHHTTTTTTTTTTHHHHTGGGSSCC
T ss_pred Hh--CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 44 89999999999999999999999999999999986
No 2
>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]}
Probab=98.96 E-value=1.1e-11 Score=95.19 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=67.7
Q ss_pred CCcccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCC---CCHHHHHHHHHHHHHhhCCCceEEEEecC
Q 041429 334 PREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPE---ANADLVLNNVIDYIRREYNIIHVTIQIER 408 (408)
Q Consensus 334 p~~~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~---~~~~~i~~~i~~~l~~~~~v~~vtIqie~ 408 (408)
+|+++.+++++.++++|||.+++++|.|+. |+.+++++||.++++ .++++|.++++++|+++++..++|||+||
T Consensus 2 lP~e~~~~I~~~i~~~~gV~~vh~lr~r~~-G~~~~vd~hi~v~~~~sv~~aH~I~~~ie~~l~~~~~~~~v~iHveP 78 (82)
T d2qfia1 2 LPDEERQEIIDIVTSWPGVSGAHDLRTRQS-GPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQDP 78 (82)
T ss_dssp CCTTHHHHHHHHHTTSSSCSCBCCCCCCTT-SCCBCCBSCTTSTTTCSCGGGHHHHHHHHHHTTSSSCCSSCBCCCCC
T ss_pred cCHHHHHHHHHHHHcCCCceeeeEEEEEEe-CCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 566788999999999999999999999986 567889999999998 48999999999999999987899999998
No 3
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}
Probab=98.91 E-value=1.8e-09 Score=82.40 Aligned_cols=73 Identities=12% Similarity=0.236 Sum_probs=64.9
Q ss_pred CcccHHHHHHHHHcCc--CccceeeeEEEEeeCCeEEEEEEEEeCCCC---CHHHHHHHHHHHHHhhCCCceEEEEecC
Q 041429 335 REIDATKLEKGILEME--EVVAIHELHIWAITVGKVLLACHVKIQPEA---NADLVLNNVIDYIRREYNIIHVTIQIER 408 (408)
Q Consensus 335 ~~~~~~~i~~~l~~~~--gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~---~~~~i~~~i~~~l~~~~~v~~vtIqie~ 408 (408)
|+++.++|++.+++.+ ++.++|++++++. ++++++++||.|+++. ++++|.+++++.|++.++..+++||+||
T Consensus 3 p~e~~~~I~~~i~~~~~~~vv~vh~lr~r~~-G~~~~vd~hi~v~~~~sv~~aH~i~~~ve~~i~~~~~~~~v~vHveP 80 (82)
T d3bypa1 3 PPEEVERIRAFLQERIRGRALEVHDLKTRRA-GPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQATIHVEP 80 (82)
T ss_dssp CHHHHHHHHHHHHHHHTTTCSEEEEEEEEEE-TTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCCceeeeEEEeeEE-CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEEeCC
Confidence 4567899999999988 4669999999975 6789999999999994 7999999999999999976799999997
No 4
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]}
Probab=81.41 E-value=0.00073 Score=58.94 Aligned_cols=85 Identities=27% Similarity=0.280 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHHHHHHH
Q 041429 60 TAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQLIWLLA 139 (408)
Q Consensus 60 ~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~~L~~~~ 139 (408)
+++++++++...+.-.+-..+|.++.+|+.|.+.|+++.+..+.+..... +||..++++++++.+++++..+
T Consensus 119 ~~~~~~~~l~~~~~~~~~~~~s~~~~a~~~~~~~D~~~s~~vii~~~~~~--------~~~~~~D~i~aiii~~~i~~~~ 190 (204)
T d2qfia2 119 VALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSW--------YGWHRADALFALGIGIYILYSA 190 (204)
T ss_dssp GGSSCGGGGTTTHHHHGGGCCSTTSGGGGGGHHHHTCCSSTTCCCTTSSC--------SSTTSSSSSSHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------hCchhhhHHHHHHHHHHHHHHH
Confidence 34455555555666667788999999999999999999887777654432 6788899999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 041429 140 GILVYEAIVRLIN 152 (408)
Q Consensus 140 ~~i~~ea~~~l~~ 152 (408)
+.++++++..|++
T Consensus 191 ~~~~~~~~~~Lld 203 (204)
T d2qfia2 191 LRMGYEAVQSLLD 203 (204)
T ss_dssp TTHHHHTGGGSSC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988875
No 5
>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}
Probab=70.05 E-value=5.1 Score=28.99 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=32.5
Q ss_pred eeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEEe
Q 041429 363 ITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQI 406 (408)
Q Consensus 363 ~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIqi 406 (408)
+.+++..+.+.+.-+.-...+.|.+++++++++..|+..|.|++
T Consensus 33 i~~~~v~v~l~lt~~~cp~~~~i~~~i~~al~~l~gv~~V~V~~ 76 (91)
T d2cu6a1 33 VEPPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEV 76 (91)
T ss_dssp EETTEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEE
T ss_pred EeccccEEEEEcCCCCCcHHHHHHHHHHHHHHcCCCCceEEEEE
Confidence 35777555544444444578889999999998767999998886
No 6
>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}
Probab=60.47 E-value=9.3 Score=28.21 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=29.6
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEEe
Q 041429 366 GKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQI 406 (408)
Q Consensus 366 ~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIqi 406 (408)
|...+.+.+..+.-.-.+.|.+++++.+++..|+.+|.|.+
T Consensus 41 g~V~v~~~lt~~~Cp~~~~i~~~i~~al~~~~gV~~v~V~i 81 (102)
T d1uwda_ 41 NNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVEL 81 (102)
T ss_dssp CEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred cceEEEEecCCCCCchHHHHHHHHHHHHHcCCCCceEEEEE
Confidence 55444443333333478899999999998777999999987
No 7
>d1iwga1 d.58.44.1 (A:38-134) Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains {Escherichia coli [TaxId: 562]}
Probab=54.67 E-value=3.8 Score=30.06 Aligned_cols=52 Identities=10% Similarity=0.195 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHh
Q 041429 339 ATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRR 395 (408)
Q Consensus 339 ~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~ 395 (408)
.+.+++.|..++ +++.++.+....|. ..+.+.++.+.+.++...++++++.+
T Consensus 25 t~plE~~l~~v~---gi~~i~S~S~~~G~--~~i~v~f~~~~d~~~a~~~v~~~v~~ 76 (97)
T d1iwga1 25 TQVIEQNMNGID---NLMYMSSNSDSTGT--VQITLTFESGTDADIAQVQVQNKLQL 76 (97)
T ss_dssp HHHHHHHCCCCS---SCCEEEEEEETTTE--EEEEEECCTTCCHHHHHHHHTTSGGG
T ss_pred hHHHHHHHhCCC---CcEEEEEEEccCCc--EEEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 345566555555 55777777543455 45678888889988888888888754
No 8
>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=47.55 E-value=31 Score=24.32 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=41.3
Q ss_pred HHHHHHHHcCcCccceeeeEE--EEeeCCeEEEEEEEEeCCCC---CHHHHHHHHHHHHHhhCCCc----eEEEEecC
Q 041429 340 TKLEKGILEMEEVVAIHELHI--WAITVGKVLLACHVKIQPEA---NADLVLNNVIDYIRREYNII----HVTIQIER 408 (408)
Q Consensus 340 ~~i~~~l~~~~gV~~v~~l~~--~~~~~~~~~~~v~v~v~~~~---~~~~i~~~i~~~l~~~~~v~----~vtIqie~ 408 (408)
+.+++.+.+.|++..-....+ ..++.+.+.+.+.+-+++.. -.+++..+|.+.|.+. ||. .-||++++
T Consensus 24 ~il~~~~~~~~~v~~~p~p~v~~~~~~~s~i~~~v~~w~~~~~~~~~~~~l~~~I~~~l~~~-gI~ip~P~~~v~~~~ 100 (101)
T d2vv5a2 24 QILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAA-GISFPYPQMDVNFKR 100 (101)
T ss_dssp HHHHHHHHHCTTBCTTSCEEEEEEEECSSSEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHH-TCCCCCCEEEEEEEC
T ss_pred HHHHHHHHhChhhhcccCchhhcccCCCceEEEEEEEEecchHHHHHHHHHHHHHHHHHHHc-CCcCCCCcEEEEEec
Confidence 345555666787776555444 45666667777777777652 3455566666666433 543 56777653
No 9
>d2cyya2 d.58.4.2 (A:65-150) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=36.43 E-value=20 Score=24.76 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=35.3
Q ss_pred cHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEE
Q 041429 338 DATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQ 405 (408)
Q Consensus 338 ~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIq 405 (408)
..+.+.+.+.++|+|..++.+ + |.+.+-+.+.++...+.++++ ++|.+.-||.++.-+
T Consensus 15 ~~~~v~~~l~~~peV~~~~~~-----t-G~~D~~~~v~~~~~~~l~~~~----~~l~~~~gV~~~~T~ 72 (86)
T d2cyya2 15 KYSEVASNLAKYPEIVEVYET-----T-GDYDMVVKIRTKNSEELNNFL----DLIGSIPGVEGTHTM 72 (86)
T ss_dssp CHHHHHHHHHTCTTEEEEEEC-----S-SSSSEEEEEEESSHHHHHHHH----HHHHTSTTEEEEEEE
T ss_pred CHHHHHHHHHCCCCeEEEEEE-----c-CCCCEEEEEEECCHHHHHHHH----HHHhCCCCEeEEEEE
Confidence 467788999999988665543 3 444444466665545555543 345544477766544
No 10
>d2cg4a2 d.58.4.2 (A:67-152) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=35.47 E-value=16 Score=25.49 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=35.7
Q ss_pred cccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEE
Q 041429 336 EIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVT 403 (408)
Q Consensus 336 ~~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vt 403 (408)
....+.+.+.+.++|+|..++.+ + |.+-+=+++.++...+.+++ +.++|.+.-||.++.
T Consensus 13 ~~~~~~~~~~l~~~peV~~~~~v-----t-G~~D~i~~v~~~d~~~l~~~---i~~~i~~~~gV~~t~ 71 (86)
T d2cg4a2 13 AKDYPSALAKLESLDEVTEAYYT-----T-GHYSIFIKVMCRSIDALQHV---LINKIQTIDEIQSTE 71 (86)
T ss_dssp GGGHHHHHHHHHTCTTEEEEEEE-----S-SSCSEEEEEEESCHHHHHHH---HHHTTTTSTTEEEEE
T ss_pred CCCHHHHHHHHHcCCCEEEEEEe-----c-CCceEEEEEEECCHHHHHHH---HHHHhhcCCCEeEEE
Confidence 34668888999999988665543 3 44444456666554444443 445565555776554
No 11
>d1i1ga2 d.58.4.2 (A:62-141) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=34.17 E-value=11 Score=25.82 Aligned_cols=59 Identities=8% Similarity=0.062 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEE
Q 041429 337 IDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTI 404 (408)
Q Consensus 337 ~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtI 404 (408)
...+++.+.+.++|+|..++.+ .|.+-+-+++.++...+.+++ +.+.|....||..+.-
T Consensus 14 ~~~~~v~~~l~~~peV~~~~~v------tG~~D~~~~v~~~d~~~l~~~---l~~~i~~~~gV~~~~t 72 (80)
T d1i1ga2 14 EKLFEVAEKLKEYDFVKELYLS------SGDHMIMAVIWAKDGEDLAEI---ISNKIGKIEGVTKVCP 72 (80)
T ss_dssp GGHHHHHHHHHHSTTEEEECCC------SSSSSEEEEEEESSHHHHHHH---HHHTTTTSTTEEEEEE
T ss_pred CcHHHHHHHHHcCCCEeEEEEE------CCCCCEEEEEEECCHHHHHHH---HHhhhccCCCEEEEEE
Confidence 3567888999999988666554 244444446665554444443 4455554556765543
No 12
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=33.17 E-value=1.3e+02 Score=25.03 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 041429 162 MFLVAAFGLVVNIIMALVLGH 182 (408)
Q Consensus 162 ~~~~~~~~l~vn~i~~~~~~~ 182 (408)
+.++.++|++.|++..+.+.+
T Consensus 44 ~~ii~v~gi~gN~lvi~vi~~ 64 (348)
T d1u19a_ 44 MFLLIMLGFPINFLTLYVTVQ 64 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHeehhhhc
Confidence 334567788889987666653
No 13
>d2cfxa2 d.58.4.2 (A:64-140) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=28.14 E-value=18 Score=24.65 Aligned_cols=45 Identities=7% Similarity=0.072 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHH
Q 041429 337 IDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLN 387 (408)
Q Consensus 337 ~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v~v~~~~~~~~i~~ 387 (408)
...+++.+.+.+.|+|..++.+ +| .+..-+++.++...+.+++++
T Consensus 13 ~~~~~~~~~i~~~peV~e~~~v-----tG-~~D~il~v~~~d~~~l~~~i~ 57 (77)
T d2cfxa2 13 ADYERFKSYIQTLPNIEFCYRI-----AG-AACYMLKINAESLEAVEDFIN 57 (77)
T ss_dssp GCHHHHHHHHHTCTTEEEEEEE-----ES-SSSEEEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHhcCchheEEEEE-----cC-CCCEEEEEEECCHHHHHHHHh
Confidence 4578999999999988666544 33 333334666665455555543
No 14
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=27.09 E-value=37 Score=19.58 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccch
Q 041429 58 LLTAVALCVVFMSIEVFGGIKANS 81 (408)
Q Consensus 58 l~~~l~~~~~~~~~~~~~g~~s~S 81 (408)
+.+.....++|++.-+++|+++|-
T Consensus 4 LKi~Vy~vV~fFv~lFiFGFLSnD 27 (35)
T d2axti1 4 LKITVYIVVTFFVLLFVFGFLSGD 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEehhhHHHHHHHHHHHhhccCC
Confidence 445556667777778888888763
No 15
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=25.31 E-value=28 Score=24.73 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=25.9
Q ss_pred HHHHhcCCCCCCC-c--cCchhHHHHHHHHHHHHHHHHHHHH
Q 041429 104 SLWAAGWESNPRQ-S--YGFFRVEILGALVSMQLIWLLAGIL 142 (408)
Q Consensus 104 a~~~s~~~~~~~~-p--~G~~R~E~l~~l~~~~~L~~~~~~i 142 (408)
..|.-+++.+.++ | -|-.++|.+...+=+++++++++..
T Consensus 40 ~~ryR~~~~~~~~~~~~~~n~~lEi~WtiIP~iil~~iav~s 81 (91)
T d1fftb2 40 AWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVLT 81 (91)
T ss_dssp TTTTTTSTTTCSSCCCCCCCSHHHHHTTHHHHHHHHHHHHHH
T ss_pred heeeeccCCccCCCCcccCCceehhhHHHHHHHHHHHHHHHH
Confidence 3444444444333 2 3667999999998888888777664
No 16
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.15 E-value=1.2e+02 Score=21.05 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=23.9
Q ss_pred cCCCCCCCccCchhHHHHHHHHHHHHHHHHHH
Q 041429 109 GWESNPRQSYGFFRVEILGALVSMQLIWLLAG 140 (408)
Q Consensus 109 ~~~~~~~~p~G~~R~E~l~~l~~~~~L~~~~~ 140 (408)
.++...++...-..+|.+...+=+++|+++++
T Consensus 47 ~~~~~~~~~~~~~~lEiiWTiiP~lILi~ia~ 78 (90)
T d1v54b2 47 TTKLTHTSTMDAQEVETIWTILPAIILILIAL 78 (90)
T ss_dssp SCSCCCCSCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccchhhHHHHHHHHHHHHHHH
Confidence 33444555566678999999999988888776
Done!