Your job contains 1 sequence.
>041430
MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV
TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL
NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF
ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL
VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS
RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG
QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP
TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS
FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG
RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAME
VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSW
TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGN
TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG
QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH
HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLT
RPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKT
GKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVD
IHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRK
QGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVK
KSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041430
(1197 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2114633 - symbol:RDR6 "AT3G49500" species:3702... 4468 0. 1
UNIPROTKB|Q8LHH9 - symbol:SHL2 "Probable RNA-dependent RN... 3800 0. 1
TAIR|locus:2136068 - symbol:RDR2 "RNA-dependent RNA polym... 1371 7.7e-146 2
TAIR|locus:2006822 - symbol:RDR1 "AT1G14790" species:3702... 1284 7.4e-145 4
UNIPROTKB|G4NJ50 - symbol:MGG_02748 "RNA-dependent RNA po... 1055 1.2e-106 1
POMBASE|SPAC6F12.09 - symbol:rdp1 "RNA-directed RNA polym... 871 6.1e-86 1
WB|WBGene00004510 - symbol:rrf-3 species:6239 "Caenorhabd... 731 1.2e-66 3
DICTYBASE|DDB_G0291249 - symbol:rrpB "RNA-directed RNA po... 399 9.5e-65 3
DICTYBASE|DDB_G0289659 - symbol:rrpA "RNA-directed RNA po... 691 1.7e-64 2
WB|WBGene00001214 - symbol:ego-1 species:6239 "Caenorhabd... 480 6.7e-60 2
WB|WBGene00004508 - symbol:rrf-1 species:6239 "Caenorhabd... 476 8.4e-60 4
ASPGD|ASPL0000040001 - symbol:rrpC species:162425 "Emeric... 613 4.4e-57 2
WB|WBGene00004509 - symbol:rrf-2 species:6239 "Caenorhabd... 439 1.0e-55 2
DICTYBASE|DDB_G0280963 - symbol:rrpC "RNA-directed RNA po... 352 3.0e-38 3
ASPGD|ASPL0000071805 - symbol:rrpB species:162425 "Emeric... 243 8.6e-38 3
TAIR|locus:2042808 - symbol:AT2G05370 "AT2G05370" species... 294 1.2e-24 1
TAIR|locus:2052020 - symbol:AT2G19930 species:3702 "Arabi... 158 4.9e-11 3
TAIR|locus:2052030 - symbol:AT2G19920 species:3702 "Arabi... 123 2.3e-10 4
TAIR|locus:2052040 - symbol:AT2G19910 species:3702 "Arabi... 130 2.7e-09 3
>TAIR|locus:2114633 [details] [associations]
symbol:RDR6 "AT3G49500" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0016441
"posttranscriptional gene silencing" evidence=TAS] [GO:0030422
"production of siRNA involved in RNA interference" evidence=TAS]
[GO:0048366 "leaf development" evidence=IGI] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IMP] [GO:0051607 "defense response to virus" evidence=IMP]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IMP] [GO:0009616 "virus induced gene silencing"
evidence=IMP] [GO:0031047 "gene silencing by RNA" evidence=IMP]
[GO:0048440 "carpel development" evidence=IGI] [GO:0048467
"gynoecium development" evidence=IMP] [GO:0048544 "recognition of
pollen" evidence=IMP] InterPro:IPR007855 Pfam:PF05183 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC012329 GO:GO:0003723
GO:GO:0048440 GO:GO:0048366 GO:GO:0010492 GO:GO:0010267
GO:GO:0048544 GO:GO:0003887 GO:GO:0009616 EMBL:AL132964
GO:GO:0003968 eggNOG:NOG307726 HOGENOM:HOG000239464 KO:K11699
ProtClustDB:CLSN2682981 PANTHER:PTHR23079 EMBL:AF239718
EMBL:AF268093 IPI:IPI00524423 RefSeq:NP_190519.1 UniGene:At.65263
ProteinModelPortal:Q9SG02 SMR:Q9SG02 MINT:MINT-7014695
STRING:Q9SG02 PaxDb:Q9SG02 PRIDE:Q9SG02 EnsemblPlants:AT3G49500.1
GeneID:824112 KEGG:ath:AT3G49500 TAIR:At3g49500 InParanoid:Q9SG02
OMA:SCAEQGN PhylomeDB:Q9SG02 Genevestigator:Q9SG02 Uniprot:Q9SG02
Length = 1196
Score = 4468 (1577.9 bits), Expect = 0., P = 0.
Identities = 835/1198 (69%), Positives = 989/1198 (82%)
Query: 1 MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
M EG K V QVS GGF + A +L YLE+EVG VWRCRLKTS TP SYP+F +
Sbjct: 1 MGSEGNMKKSVVTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEI 60
Query: 61 TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
+T+ + D+Y+KVEPHAFVHFA+ RA+DAAG+ L L+G+ LKVSLGP+NP+ L
Sbjct: 61 ADTSNIPSIDEYKKVEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSL 120
Query: 121 NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
NQR RT+ P+KL + +EIGTLVSRD+FFV+WR A G DFLVDPFD TCKFCF + AF
Sbjct: 121 NQRRRTTVPYKLAGITLEIGTLVSRDDFFVSWR--AEGVDFLVDPFDNTCKFCFRKSTAF 178
Query: 181 ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
+ K + HAVI C++K+E LVR+I V+QY ++LQLASSPRVWYRTADDDI
Sbjct: 179 SFKDAVMHAVINCDYKLELLVRDIQTVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDT 238
Query: 241 VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS 300
VP D+LDDDDPWIRTTDFT GAIGRC+SYR+ IS R+ KL + Y RRVQ + +
Sbjct: 239 VPGDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVR 298
Query: 301 RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG 360
P IR EP F P+SD FFCIH++EGISFEIMFLVN+V+H+G+ NQ QL++ FFDLLR
Sbjct: 299 WPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRN 358
Query: 361 QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP 420
Q ++VN+A+LKH+ +YK PVFDA KRLKLVQEW+ K+P+L +Q +DI E+RRLVITP
Sbjct: 359 QPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVITP 418
Query: 421 TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
T+AYCLPPEVELSNRVLR+YK +A+RFLRVTFMDE +QT+N+NVLSYF+APIV+D+T +S
Sbjct: 419 TRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSS 478
Query: 481 FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540
FSQKT VFKRV+SIL+ GF LCGRK+SFLAFS++QLRD SAWFF+EDGKT V DIK WMG
Sbjct: 479 FSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMG 538
Query: 541 RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAME 600
+F DKN+AKCAARMG CFSSTYATV+V P EVD E+PDI+RNGYVFSDGIG ITPDLA E
Sbjct: 539 KFKDKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNGYVFSDGIGTITPDLADE 598
Query: 601 VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSW 660
V +KLKLDV+ PCAYQIRYAG KGVVA WP+K DGIR++LR+SM KF S HT LEICSW
Sbjct: 599 VMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICSW 658
Query: 661 TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGN 720
TRFQPGFLNRQIITLLS L VPDE+FW MQ+SML KLN++L D+DVAFEVLTA+CAEQGN
Sbjct: 659 TRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQGN 718
Query: 721 TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
TAAIMLSAGF P+TEPHLRGML+ +R AQLWGLREK+RIFV +GRWLMGCLDE G+LE G
Sbjct: 719 TAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHG 778
Query: 781 QCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
QCFIQVS+P + NCFSKHGSRF ETK L+V+KG+V IAKNPCLHPGD+RILEAVD P+L
Sbjct: 779 QCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQL 838
Query: 840 HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL 899
HH+YDCL+FPQKGDRPHTNEASGSDLDGDLYFV WD+ LIPP++KS+P M Y+AAE K+L
Sbjct: 839 HHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSL 898
Query: 900 TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
R V+ +DII+FFA+++ NE LGTICNAHVVHAD SEYGA+DE C+LLAELAATAVDFPK
Sbjct: 899 GRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPK 958
Query: 960 TGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPV 1019
TGKIV+MP HLKPKLYPDFMGKE YQ+YKSNKILGRLYR+ K+ YDED SSE +P
Sbjct: 959 TGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEESTDPS 1018
Query: 1020 DIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSR 1079
I YD LE+P D I +AW KC YDGQL GLL QYKV +EEE+VTGHIWSMPKY S+
Sbjct: 1019 AIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSK 1078
Query: 1080 KQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWV 1139
KQGELKERLKHSY++L+KEFR+VFE+ D E LSE+EKN L+E+KASAWY VTYHPEWV
Sbjct: 1079 KQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWV 1138
Query: 1140 KKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
KKSL+LQ+ D + +LSFAWIA DYLARIKIR REM +ID++KPV+ LA+++A R+
Sbjct: 1139 KKSLELQDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFLAQRL 1196
>UNIPROTKB|Q8LHH9 [details] [associations]
symbol:SHL2 "Probable RNA-dependent RNA polymerase SHL2"
species:39947 "Oryza sativa Japonica Group" [GO:0010492
"maintenance of shoot apical meristem identity" evidence=IMP]
[GO:0016246 "RNA interference" evidence=IMP] InterPro:IPR007855
Pfam:PF05183 GO:GO:0005634 GO:GO:0016246 GO:GO:0003723
GO:GO:0048440 GO:GO:0048366 GO:GO:0010492 GO:GO:0010267
EMBL:AP008207 GO:GO:0048544 GO:GO:0009616 GO:GO:0003968
eggNOG:NOG307726 HOGENOM:HOG000239464 PANTHER:PTHR23079 OMA:SCAEQGN
EMBL:AB353923 EMBL:AP004357 RefSeq:NP_001043229.1 UniGene:Os.30747
EnsemblPlants:LOC_Os01g34350.1 GeneID:4323938 Gramene:Q8LHH9
ProtClustDB:CLSN2691477 BRENDA:2.7.7.48 Uniprot:Q8LHH9
Length = 1218
Score = 3800 (1342.7 bits), Expect = 0., P = 0.
Identities = 742/1201 (61%), Positives = 895/1201 (74%)
Query: 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV----TNTAE 65
LV QVS GGFD V A +L +LE+EVG VWRCR+KTS TP +SYPDF + + +
Sbjct: 27 LVTTQVSLGGFDAGVAAGDLADFLEHEVGLVWRCRVKTSWTPPDSYPDFALPTAPASASA 86
Query: 66 VRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGR 125
Y++V PHAFVHFA P RA D AG T L L G+ L+V+ P++ R+++R
Sbjct: 87 AAAPPRYDRVPPHAFVHFARPEGARRAADLAGETRLILRGKPLRVASAPDSSLRVSRRSS 146
Query: 126 TSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSS 185
+ PF+ PDV +E+G L S F AWRGP +G D VDPFDG C+ FTRD AF
Sbjct: 147 IA-PFRFPDVRLEVGALPSPGAFLAAWRGPDAGLDLSVDPFDGCCRLVFTRDTAFTFPGF 205
Query: 186 TEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDM 245
E A I+C+ K+EF VR++ V+ Y C ++LL+LA++P V YRTADDD VPFD+
Sbjct: 206 REVAAIRCDVKLEFPVRDVLEVRLY-RLDC-SLLLRLAAAPLVHYRTADDDFHEPVPFDL 263
Query: 246 LDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS----- 300
LDDDDPWIRTTD TPSGAIGRC YRIS S+R K+ + + Y+ ERRV +
Sbjct: 264 LDDDDPWIRTTDITPSGAIGRCGVYRISFSARFWPKMDRALDYMRERRVAIVDCGGGWGP 323
Query: 301 -RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLR 359
R +T+R+E +F PM D FFC+ + EG+ F ++F+VNA++HKGIINQHQL+ FF LL
Sbjct: 324 RRGLTVRDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLL- 382
Query: 360 GQSRE-VNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVI 418
G+S E VNVAAL+ + K+PVFDAC RLK + ++P+L K DD EVRRLVI
Sbjct: 383 GRSEENVNVAALRDFWGDKFPVFDACGRLKKALNRVARNPKLLCS-KVGDDHAEVRRLVI 441
Query: 419 TPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITL 478
TPT+AYCLPPEVE SNRVLR Y ++ADRFLRVTFMDEG+Q +N NVL+ F APIV+D+
Sbjct: 442 TPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMS 501
Query: 479 NSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKW 538
N F QKT V+KRVR +L+ GF++CGRK+SFLAFSS+QLRD SAWFF+ED KT+V I+KW
Sbjct: 502 NFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKW 561
Query: 539 MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLA 598
MGRFT KN+AK AARMGQCFSSTYATV + P EVD D+ N Y+FSDGIGKITPDLA
Sbjct: 562 MGRFTSKNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNEYIFSDGIGKITPDLA 621
Query: 599 MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEIC 658
+EVA++L+L NPP AYQIR+AG KGV+A W GDG R+ LR SM KF+S+H LE+
Sbjct: 622 LEVAERLQLTDNPPS-AYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVV 680
Query: 659 SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ 718
SWT+FQPGFLNRQII LLS+LNVPD +FW MQ++MLS LN +L D DVAFEVLT +CA+
Sbjct: 681 SWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTTSCADD 740
Query: 719 GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE 778
GNTAA+MLSAGF P+TEPHL+ ML IR+AQL L EKARIFVP GRWLMGCLDELGVLE
Sbjct: 741 GNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLE 800
Query: 779 GGQCFIQVSEPFLGNCFSKHGSRFAET-KKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP 837
GQCFI+ + P L + F KHGSRF+ T K +VI G VVIAKNPCLHPGD+RILEAVD P
Sbjct: 801 QGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRILEAVDVP 860
Query: 838 ELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAK 897
ELHHL DCLVFPQKG+RPH NEASGSDLDGDLYFVTWDE LIPP KKSW PM+Y+ EAK
Sbjct: 861 ELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAK 920
Query: 898 TLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDF 957
L R V Q DII+FF K+M++ENLG ICNAHVVHAD SEYGA+DE CI LAELAATAVDF
Sbjct: 921 QLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDF 980
Query: 958 PKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDIN 1017
PKTGK+ MP HLKPK+YPDFMGKE QSYKS KILGRLYR ++A + D+ VS EV
Sbjct: 981 PKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNGDV-VSQEV-CT 1038
Query: 1018 PVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYN 1077
P D+ YD DLEVP + DF+A AW KCSYD QL+ LL QY+V E ELVTGHI + K +
Sbjct: 1039 PNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKNS 1098
Query: 1078 SRKQGELKERLKHSYSALRKEFRQVFEKMDSD-CELLSEDEKNALFERKASAWYQVTYHP 1136
S+KQG++K+RLK +YSALRKEF+ FE + SD CE+ +DEKN L+E KASAWYQVTYHP
Sbjct: 1099 SKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEI-GDDEKNLLYEMKASAWYQVTYHP 1157
Query: 1137 EWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADR 1196
+WV+KS + D LSFAWI DYLARIK+RC ++ KPV LA Y+++R
Sbjct: 1158 KWVEKSRGILGPDGEEIPASLSFAWIPVDYLARIKLRCHGKVRVEGQKPVERLAAYISER 1217
Query: 1197 I 1197
I
Sbjct: 1218 I 1218
>TAIR|locus:2136068 [details] [associations]
symbol:RDR2 "RNA-dependent RNA polymerase 2" species:3702
"Arabidopsis thaliana" [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
[GO:0009751 "response to salicylic acid stimulus" evidence=IEP]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA;IMP] [GO:0016458 "gene silencing" evidence=IMP]
[GO:0007267 "cell-cell signaling" evidence=RCA;IMP] [GO:0016246
"RNA interference" evidence=RCA;IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0010495 "long-distance posttranscriptional gene
silencing" evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010073 "meristem maintenance" evidence=RCA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR007855
Pfam:PF05183 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161531
GO:GO:0005730 GO:GO:0050832 GO:GO:0007267 GO:GO:0003723
GO:GO:0030422 EMBL:AF080120 EMBL:AL049876 GO:GO:0010495
GO:GO:0003968 HOGENOM:HOG000239464 KO:K11699
ProtClustDB:CLSN2682981 PANTHER:PTHR23079 IPI:IPI00535843
PIR:T01920 RefSeq:NP_192851.1 UniGene:At.43417
ProteinModelPortal:O82504 SMR:O82504 STRING:O82504 PaxDb:O82504
PRIDE:O82504 EnsemblPlants:AT4G11130.1 GeneID:826714
KEGG:ath:AT4G11130 TAIR:At4g11130 eggNOG:NOG252917
InParanoid:O82504 OMA:SKCAARM PhylomeDB:O82504
Genevestigator:O82504 Uniprot:O82504
Length = 1133
Score = 1371 (487.7 bits), Expect = 7.7e-146, Sum P(2) = 7.7e-146
Identities = 386/1110 (34%), Positives = 572/1110 (51%)
Query: 65 EVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPEN--PFRLNQ 122
E+ T D K A V F +RA + +++L L++S ++ P ++
Sbjct: 43 EIPTTRDNWKPRDFARVQFTTLEVKSRAQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDP 102
Query: 123 RGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFT--RDIAF 180
R R L D+ + +G S ++ F A ++ +DG + T R + F
Sbjct: 103 RKR------LDDIVLTVGFPESDEKRFCA-----------LEKWDGVRCWILTEKRRVEF 145
Query: 181 ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
+ S + K E + E ++ ++ A LL+L P+V+ R I
Sbjct: 146 WVWESGD--CYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPKVFKRVTVH-IATK 202
Query: 241 VPFDML-----DDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQ 295
D D D WIRTTDF+ S +IG + + + H G I + G +
Sbjct: 203 FKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEV---HNGSTMLDI-FSGLPYYR 258
Query: 296 VDSLSRPITIREEPDFE-----VPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQL 350
D+LS +T + F VP+ + + E +EI+F +NA++H I+
Sbjct: 259 EDTLS--LTYVDGKTFASAAQIVPLLNAAI-LGLE--FPYEILFQLNALVHAQKISLFAA 313
Query: 351 SD-SFFDLLRGQSREVNVAALKHIYSYKW----PVFDACKRLKLVQEWLLKDP-ELYKGP 404
SD +LRG S E + LK ++ PVF +++ V + + P YK
Sbjct: 314 SDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPASAYKRL 373
Query: 405 KQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANV 464
+ +I+ +R +TP+K Y L PE+E +N V++ + + F+RVTF++E + AN
Sbjct: 374 TE-QNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANA 432
Query: 465 LS------YFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRD 518
LS YF+ P +T ++ RV SIL G + ++F FLAFS+SQLR
Sbjct: 433 LSVNSKEGYFVKP-----------SRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRG 481
Query: 519 CSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELP 577
S W F+ + K DI++WMG F ++I+KCAARMGQ FS++ T+ V +V+ ++P
Sbjct: 482 NSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVE-QIP 540
Query: 578 DIK--RNG--YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAK 633
DI+ +G Y FSDGIGKI+ A +VAQK L + P A+QIRY G KGV+A +
Sbjct: 541 DIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL--SHVPSAFQIRYGGYKGVIAV--DR 596
Query: 634 GDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSM 693
++SLR+SM KF S++ L + WT P FLNR+II LLSTL + D MF +MQ
Sbjct: 597 SSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVH 656
Query: 694 LSKLNQMLVDSDVAFEVLTAACAEQGNTAAI-MLSAGFNPQTEPHLRGMLTCIRAAQLWG 752
LS L ML D D A VL E + ML G+ P +EP+L ML +QL
Sbjct: 657 LSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSE 716
Query: 753 LREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET-KKLQVI 811
L+ + RI VP GR L+GC+DE+G+LE GQ +++V+ S+ S F + ++ V+
Sbjct: 717 LKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLT-KAELKSRDQSYFRKIDEETSVV 775
Query: 812 KGFVVIAKNPCLHPGDIRILEAVD--HPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDL 869
G VV+ KNPCLHPGDIR+L+A+ H E DC++FPQKG+RPH NE SG DLDGD
Sbjct: 776 IGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQ 835
Query: 870 YFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHV 929
+FV+WDE +IP PPM+Y + + + V +I +FF +M+++ LG I AH+
Sbjct: 836 FFVSWDEKIIPSEMD--PPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHL 893
Query: 930 VHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKS 989
VHAD A + C+ LA L + AVDF KTG MP LKP+ +PDF+ + +Y S
Sbjct: 894 VHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYIS 953
Query: 990 NKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQ 1049
+ G+LYR K + + + D + YD LE FI A + Y +
Sbjct: 954 ESVFGKLYRAVKSSLAQRKPEAESEDT----VAYDVTLEEAGFESFIETAKAHRDMYGEK 1009
Query: 1050 LNGLLEQYKVNREEELVTGHIWSMPKY---NSRKQGELKERLKHSYSALRKEFRQVFEKM 1106
L L+ Y EEE++TG + + Y ++R+ G++K+R+ S L KE FEK
Sbjct: 1010 LTSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEK- 1068
Query: 1107 DSDCELLSEDEKNALFERKASAWYQVTYHP 1136
CE E +K L ASAWY VTY+P
Sbjct: 1069 --SCE--DEQQKKKL----ASAWYYVTYNP 1090
Score = 75 (31.5 bits), Expect = 7.7e-146, Sum P(2) = 7.7e-146
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 1115 EDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRC 1174
EDE+ ++ ASAWY VTY+P +D + LSF WI D L IK
Sbjct: 1071 EDEQQK--KKLASAWYYVTYNPN---------HRDE--KLTFLSFPWIVGDVLLDIKAEN 1117
Query: 1175 REMANID 1181
+ +++
Sbjct: 1118 AQRQSVE 1124
>TAIR|locus:2006822 [details] [associations]
symbol:RDR1 "AT1G14790" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0016441
"posttranscriptional gene silencing" evidence=ISS] [GO:0009615
"response to virus" evidence=IMP] [GO:0009751 "response to
salicylic acid stimulus" evidence=IEP] [GO:0060148 "positive
regulation of posttranscriptional gene silencing" evidence=IMP]
[GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009617 "response to
bacterium" evidence=RCA] [GO:0009862 "systemic acquired resistance,
salicylic acid mediated signaling pathway" evidence=RCA]
[GO:0009867 "jasmonic acid mediated signaling pathway"
evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0031348
"negative regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0010025
"wax biosynthetic process" evidence=IGI] InterPro:IPR007855
Pfam:PF05183 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006952
GO:GO:0010025 GO:GO:0009751 GO:GO:0003723 GO:GO:0009615
GO:GO:0031047 EMBL:AC006917 UniGene:At.70434 GO:GO:0003968
EMBL:AY148431 EMBL:AK228731 EMBL:AJ011977 IPI:IPI00542699
RefSeq:NP_172932.1 UniGene:At.27823 ProteinModelPortal:Q9LQV2
SMR:Q9LQV2 STRING:Q9LQV2 PaxDb:Q9LQV2 PRIDE:Q9LQV2
EnsemblPlants:AT1G14790.1 GeneID:838044 KEGG:ath:AT1G14790
TAIR:At1g14790 eggNOG:NOG307726 HOGENOM:HOG000239464
InParanoid:Q9LQV2 KO:K11699 OMA:YEDYITE PhylomeDB:Q9LQV2
ProtClustDB:CLSN2682981 Genevestigator:Q9LQV2 GO:GO:0060148
PANTHER:PTHR23079 Uniprot:Q9LQV2
Length = 1107
Score = 1284 (457.0 bits), Expect = 7.4e-145, Sum P(4) = 7.4e-145
Identities = 283/671 (42%), Positives = 407/671 (60%)
Query: 475 DITLNSFSQK-TRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVL 533
D++ S +Q+ T+++ R+ S+L G + +KF FLAFSSSQLR+ SAW F+ + +
Sbjct: 418 DLSPRSSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAA 477
Query: 534 DIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK----RNGYVFSD 588
I+ WMG F +N+AK AAR+GQ FSS+ T+ V E++ +PD++ YVFSD
Sbjct: 478 HIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV-IPDVEIISLGTRYVFSD 536
Query: 589 GIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKF 648
GIGKI+ + A +VA+K L P A+QIRY G KGVVA P ++SLR+SM+KF
Sbjct: 537 GIGKISAEFARKVARKCGL-TEFSPSAFQIRYGGYKGVVAVDPNSSK--KLSLRKSMSKF 593
Query: 649 QSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAF 708
+S +T L++ +W+++QP ++NRQ+ITLLSTL V D +F Q ++ +L+ +L A
Sbjct: 594 ESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAH 653
Query: 709 EVL-TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWL 767
E L A E N ++ G+ P EP L ML RA++L LR K RIF+ GR +
Sbjct: 654 EALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSM 713
Query: 768 MGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGD 827
MGCLDE LE GQ +Q S+P + G RF +I G VV+AKNPCLHPGD
Sbjct: 714 MGCLDETRTLEYGQVVVQYSDPM------RPGRRF-------IITGPVVVAKNPCLHPGD 760
Query: 828 IRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWP 887
+R+L+AV+ P L+H+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD+ L+PP ++
Sbjct: 761 VRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPP--RTSE 818
Query: 888 PMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILL 947
PM+Y + L V ++ E+FA ++VN++LG I NAH AD A + CI L
Sbjct: 819 PMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIEL 878
Query: 948 AELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDED 1007
A+ +TAVDFPKTG +P HL K YPDFM K +Y+S ++G+L+R+ K+
Sbjct: 879 AKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPL 938
Query: 1008 ISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVT 1067
IS+ S ++ YD D+EV +++ +A+ QK +YD +L L++ Y + E E+++
Sbjct: 939 ISIKS-FTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILS 997
Query: 1068 GHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKAS 1127
G I M K ++++ E + + ALRKE +F SE+E+N KAS
Sbjct: 998 GGIMRMSKSFTKRRDA--ESIGRAVRALRKETLSLFNA--------SEEEENE--SAKAS 1045
Query: 1128 AWYQVTYHPEW 1138
AWY VTYH +
Sbjct: 1046 AWYHVTYHSSY 1056
Score = 802 (287.4 bits), Expect = 3.3e-87, Sum P(4) = 3.3e-87
Identities = 215/614 (35%), Positives = 330/614 (53%)
Query: 218 ILLQLASSPRVWYRTADDDILVLVPF-DMLDD--DDPWIRTTDFTPSGAIGRCNSYRISI 274
+++Q+ +P++ + D I +L D D D+ WIRTTDFT S IG+ ++ + +
Sbjct: 169 LVIQVIGAPKI-FEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLEL 227
Query: 275 SSR-HRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFCIHYEEGIS--FE 331
+ + E R + + + VP+ DP G S FE
Sbjct: 228 PVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDP------PPGFSLPFE 281
Query: 332 IMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKR----L 387
I+F +N ++ ++ L F+ LL ++ + A + H + + + C L
Sbjct: 282 ILFKLNTLVQNACLSGPALDLDFYRLLN--QKKYDRALIDHCLEKLFHLGECCYEPAHWL 339
Query: 388 K-LVQEWLLKDPELYKGPK-QIDD-IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLA 444
+ ++W+ K +L P +DD +V + R+ +TP + Y PEV +SNRVLR Y
Sbjct: 340 RDEYKKWISKG-KLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYI 398
Query: 445 DRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGR 504
+ FLRV+F+DE L+ V S ++P +S ++T+++ R+ S+L G + +
Sbjct: 399 NNFLRVSFVDEDLE----KVRSMDLSP------RSSTQRRTKLYDRIYSVLRDGIVIGDK 448
Query: 505 KFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYA 563
KF FLAFSSSQLR+ SAW F+ + + I+ WMG F +N+AK AAR+GQ FSS+
Sbjct: 449 KFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRE 508
Query: 564 TVEVPPTEVDPELPDIK----RNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIR 619
T+ V E++ +PD++ YVFSDGIGKI+ + A +VA+K L P A+QIR
Sbjct: 509 TLNVRSDEIEV-IPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGL-TEFSPSAFQIR 566
Query: 620 YAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTL 679
Y G KGVVA P ++SLR+SM+KF+S +T L++ +W+++QP ++NRQ+ITLLSTL
Sbjct: 567 YGGYKGVVAVDPNSSK--KLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTL 624
Query: 680 NVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL-TAACAEQGNTAAIMLSAGFNPQTEPHL 738
V D +F Q ++ +L+ +L A E L A E N ++ G+ P EP L
Sbjct: 625 GVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFL 684
Query: 739 RGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKH 798
ML RA++L LR K RIF+ GR +MGCLDE LE GQ +Q S+P +
Sbjct: 685 SMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPM------RP 738
Query: 799 GSRFAETKKLQVIK 812
G RF T + V K
Sbjct: 739 GRRFIITGPVVVAK 752
Score = 98 (39.6 bits), Expect = 7.4e-145, Sum P(4) = 7.4e-145
Identities = 33/86 (38%), Positives = 40/86 (46%)
Query: 1086 ERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDL 1145
E + + ALRKE +F SE+E+N KASAWY VTYH + L
Sbjct: 1014 ESIGRAVRALRKETLSLFNA--------SEEEENE--SAKASAWYHVTYHSSY----WGL 1059
Query: 1146 QEQDSARSVVLLSFAWIANDYLARIK 1171
+ R LSFAW D L RIK
Sbjct: 1060 YNEGLNRDH-FLSFAWCVYDKLVRIK 1084
Score = 43 (20.2 bits), Expect = 7.4e-145, Sum P(4) = 7.4e-145
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 19 GFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFY 59
GF V A E+ K+LE G +K P + P Y
Sbjct: 9 GFPNGVSAEEVKKFLERLTGSGTVYAIKVR-QPKKGGPRVY 48
Score = 38 (18.4 bits), Expect = 7.4e-145, Sum P(4) = 7.4e-145
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 128 TPFKLPDVCVEIGTLVSRDEFFVAW 152
T + DVCV G + + F +W
Sbjct: 115 TLWSAQDVCVSFGIGMRKLHFSFSW 139
>UNIPROTKB|G4NJ50 [details] [associations]
symbol:MGG_02748 "RNA-dependent RNA polymerase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR007855 Pfam:PF05183 EMBL:CM001237
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 RefSeq:XP_003721007.1
EnsemblFungi:MGG_02748T0 GeneID:5050479 KEGG:mgr:MGG_02748
Uniprot:G4NJ50
Length = 1407
Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
Identities = 275/779 (35%), Positives = 414/779 (53%)
Query: 414 RRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIV 473
R++ +TP+ Y P VE +NRVLR Y + DRFLRV F DE L T + AP
Sbjct: 457 RKVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDE-LPTGRLH------AP-- 507
Query: 474 RDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVL 533
N +F RV +L G ++ R + FLAF SSQ+R+ S +FF + G +
Sbjct: 508 -----NDLGADDEIFSRVYRVLKNGIHIGDRHYKFLAFGSSQMRENSTYFFCDAGDVTCD 562
Query: 534 DIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGK 592
I+ WMGRF+ +N+ K AAR+GQCFS+T + V + +PDI++NGY F+DG+GK
Sbjct: 563 SIRAWMGRFSHIRNVGKYAARLGQCFSTTRSIDRVAMPWIKT-IPDIEKNGYCFTDGVGK 621
Query: 593 ITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP-AKGDGIRMSLRESMNKFQSH 651
I+ A+ +++ LKLD P A+Q R GCKGV+ W KG I +R S KF++
Sbjct: 622 ISSLWAVVISENLKLDYIPS--AFQFRMGGCKGVLVVWEDVKGQEIH--IRPSQLKFETD 677
Query: 652 HTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL 711
H+ LE+ + F LNRQ I++L++L V +E+F SM L+K N+ + D+ A +L
Sbjct: 678 HSRLEVIRCSHFSVASLNRQTISVLTSLGVKNEVFESMLAEQLAKYNRAMEDATAAMTLL 737
Query: 712 TAACAEQG--NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMG 769
T E NT A ++ AGF EP + ML R + L+EKAR+ V G +++G
Sbjct: 738 TQYVDENQMTNTLARLVKAGFMESHEPFVCTMLRLWRTWSVKTLKEKARLVVEKGAFVLG 797
Query: 770 CLDELGVLEGGQCFIQVS---EPFL-GNCFSKHGSRFAE-----TKKLQVIKGFVVIAKN 820
C+DE L G I S P L GN K F + ++ +VI G ++ +N
Sbjct: 798 CVDETKTLHGHFTHIPASPNQRPRLNGNM--KLPEIFLQVPDGPSRDYKVITGLCLVGRN 855
Query: 821 PCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP 880
P LHPGDIR+++A+D P+L H+ D +VF Q GDR SG DLDGD +FV WDE L+P
Sbjct: 856 PSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDRDIPGMCSGGDLDGDDFFVLWDERLLP 915
Query: 881 -PSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGA 939
PS++++ P Y+ A+ L R V D+ +FF +M N +L I +AH+ AD +YGA
Sbjct: 916 LPSQRNYKPASYHPPPARELDREVTADDLCQFFVTYMKNFSLPRIAHAHLAQAD--KYGA 973
Query: 940 LDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQ 999
DE C+ LA L + AVD+PKTG + L P +P FM K A Y S KILG+LY Q
Sbjct: 974 KDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMPNEFPHFMEK-ARGRYHSRKILGKLYDQ 1032
Query: 1000 SKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKV 1059
K + D+ + ++ + + +A K YD + ++ Q+++
Sbjct: 1033 VKPVNFHP-AYEMPFDVKILSLYGELSQHGDLGPKLLREARKLKTLYDQSIMRIMGQHEI 1091
Query: 1060 NREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQ----VFEKMDSDCELLSE 1115
E E+ + + S + S Q +L E + + L+ FR+ E + +
Sbjct: 1092 ATEFEVFSAFVLSSRRVGS--QYKLGEIVGQQSATLKTVFREKCIAALETVSGRTGIKPR 1149
Query: 1116 DEKNALFERKASAWYQVTYHPEWVKKSL-DLQEQD---SARSVVLLSFAWIANDYLARI 1170
D + F A Y+VT E +K +L + + + + +S+ L++F WI + L ++
Sbjct: 1150 DIE--AFGPFVVAMYKVT--DEEIKIALHECKTRGVKANPKSMPLITFPWIFDQILVQL 1204
>POMBASE|SPAC6F12.09 [details] [associations]
symbol:rdp1 "RNA-directed RNA polymerase Rdp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005721 "centromeric heterochromatin" evidence=IDA] [GO:0005724
"nuclear telomeric heterochromatin" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0030702 "chromatin silencing at
centromere" evidence=IMP] [GO:0031047 "gene silencing by RNA"
evidence=IMP] [GO:0031048 "chromatin silencing by small RNA"
evidence=IDA] [GO:0031060 "regulation of histone methylation"
evidence=IMP] [GO:0031380 "nuclear RNA-directed RNA polymerase
complex" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0034613 "cellular protein
localization" evidence=IMP] [GO:0045141 "meiotic telomere
clustering" evidence=IMP] [GO:0071276 "cellular response to cadmium
ion" evidence=IMP] [GO:0071585 "detoxification of cadmium ion"
evidence=IMP] InterPro:IPR007855 Pfam:PF05183 PomBase:SPAC6F12.09
GO:GO:0005829 EMBL:CU329670 GO:GO:0034613 GenomeReviews:CU329670_GR
GO:GO:0071276 GO:GO:0071585 GO:GO:0003723 GO:GO:0030702
GO:GO:0000070 GO:GO:0031048 GO:GO:0005721 GO:GO:0031934
GO:GO:0005724 GO:GO:0045141 GO:GO:0031060 GO:GO:0031380
GO:GO:0003968 eggNOG:NOG307726 KO:K11699 PANTHER:PTHR23079
PIR:T11660 RefSeq:NP_593295.1 IntAct:O14227 STRING:O14227
EnsemblFungi:SPAC6F12.09.1 GeneID:2542198 KEGG:spo:SPAC6F12.09
OMA:RISAQNT OrthoDB:EOG44QX81 NextBio:20803268 Uniprot:O14227
Length = 1215
Score = 871 (311.7 bits), Expect = 6.1e-86, P = 6.1e-86
Identities = 266/884 (30%), Positives = 433/884 (48%)
Query: 325 EEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDAC 384
++ I EI +L+ A + K ++++ L +L + S+E L+ I + K + +
Sbjct: 375 DKEIEEEIAYLLQACLSKNLLSEIDLPIILANLKK-LSKERAKKFLRLILTSKTALINPS 433
Query: 385 KRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLA 444
+ L + ++ D L + +++L +TPT + +E NRV+R +KD A
Sbjct: 434 E-LDFTKSFVFYD--LSSASS-----IHIKKLYVTPTTLRIVEDSLEAGNRVIRNFKDFA 485
Query: 445 DRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGR 504
+RF+RV DE Y+ I R + + F + +++ R++ +L+ G + +
Sbjct: 486 NRFMRVQITDE-----------YYKQKI-RGGS-DGFRNE-KLYSRIQQLLTYGIKVGNQ 531
Query: 505 KFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKN-IAKCAARMGQCFSSTYA 563
+ FLAF +SQLR+ A+FF+ + I++WMG F++ N ++K AARMGQCFS+T
Sbjct: 532 IYEFLAFGNSQLREHGAYFFASGSDLNAKQIREWMGDFSEINSVSKYAARMGQCFSTTK- 590
Query: 564 TVEVPPTEVDPELPD-IKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPP---PCAYQIR 619
E+ VD L D I RN + F+DG+G + + V ++L L+V P A+Q R
Sbjct: 591 --EINRFCVDISLQDDIVRNNHCFTDGVGMAS----LSVIRRLSLEVKNHDMFPSAFQFR 644
Query: 620 YAGCKGVVACWPAKG----DGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITL 675
G KGV++ P G + R S +KF+S H+TLE+ +RF LN Q+ITL
Sbjct: 645 MGGYKGVLSLAPPTKLEYHQGNLVFPRRSQDKFKSFHSTLEVIKISRFSNAHLNMQLITL 704
Query: 676 LSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQ 733
L L V +F + S LSK+N+ + + +L E +T I + AGF +
Sbjct: 705 LEGLGVEKTVFLELTRSQLSKMNESINSKQKSILMLRDNVDEYHSTLIIADFIQAGFLER 764
Query: 734 TEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG--GQCFIQVSEPFL 791
+ +L L ++EK ++ VP G +L+G DE G L+G + V E F+
Sbjct: 765 DDAFTENLLNLYYEWVLRLIKEKQKVSVPKGAYLLGVADETGTLKGHYDDAVLSVPEIFI 824
Query: 792 G--NCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFP 849
+ + GS K +VI G ++A+NP LHPGD+R+ +AV EL HL + +VFP
Sbjct: 825 QITDTSTSFGSYSTGKLKTRVIVGLCIVARNPSLHPGDVRVCKAVRCDELMHLKNVIVFP 884
Query: 850 QKGDRPHTNEASGSDLDGDLYFVTWDENLIP------PSKKSWPPMEYNAAEAKTLTRPV 903
GDR SG DLDGD Y V WD+ L+P P +S P + E K L +
Sbjct: 885 TTGDRSIPAMCSGGDLDGDEYTVIWDQRLLPKIVNYPPLLESSPKKSIDFLEGKPL---I 941
Query: 904 DQRDIIEFFAKHMVNENLGTICNAHVVHA-DHSEY--GALDENCILLAELAATAVDFPKT 960
D + EFF ++ ++LG I NA A DH G C+ LAE+ + AVDF K+
Sbjct: 942 DS--VKEFFVNYIKYDSLGLISNAWKAWAHDHDNNPEGIFGNVCLELAEMHSKAVDFAKS 999
Query: 961 GKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPV- 1019
G M A PK YPDFM K +S++S +G+++R + E NP+
Sbjct: 1000 GVACKMQAKYHPKRYPDFMQKTKTRSFRSETAVGKIFRYAARFQRES---GRPATYNPIM 1056
Query: 1020 DIHYDTDLEVPE-SVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHI-WSMPKYN 1077
+ YD +++P +++ A K YD L ++ ++ ++ E E+ T I +
Sbjct: 1057 NTVYDPCMKLPRFKTEYLNVAEEVKKHYDNDLRSIMARFDISTEYEVYTAFILFKDDLAK 1116
Query: 1078 SRKQGELKERLKHSYSALRKEFRQVF-EKMD-SDCELLSEDEKNALFERKASAWYQVTYH 1135
+ + L+E + + L+K++ Q + EK S+ E +A Y VTY
Sbjct: 1117 TVNEYGLREEVSFQFDLLKKKYTQEYLEKCALSNQSAFDSSEYEERINSAVAATYDVTYD 1176
Query: 1136 PEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMAN 1179
KS+ + + VL+SF ++ + L ++ + AN
Sbjct: 1177 QR--VKSVG-----NGTTEVLISFPYLFSSRLCQLSRKAMLTAN 1213
>WB|WBGene00004510 [details] [associations]
symbol:rrf-3 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007855 Pfam:PF05183 EMBL:Z48334 GO:GO:0003968
PANTHER:PTHR23079 EMBL:Z66500 GeneTree:ENSGT00390000016620
RefSeq:NP_495713.2 IntAct:G5EE53 EnsemblMetazoa:F10B5.7
GeneID:174315 KEGG:cel:CELE_F10B5.7 CTD:174315 WormBase:F10B5.7
OMA:HISKAKI Uniprot:G5EE53
Length = 1765
Score = 731 (262.4 bits), Expect = 1.2e-66, Sum P(3) = 1.2e-66
Identities = 233/808 (28%), Positives = 391/808 (48%)
Query: 388 KLVQEWLLKDPELYKG-PKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADR 446
+L++ L+D L K PK + V V ++++TP++ + PEV + NRV+R++ D
Sbjct: 656 RLLKGESLQDVGLAKPLPK---NCVSVAKVIVTPSRILLMAPEVMMVNRVVRRFGP--DY 710
Query: 447 FLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKF 506
LR F D+ L + S + +I S V + + L G + R +
Sbjct: 711 ALRCVFRDDNLGRLAIRDFS------INNIDHMS----NIVTEGIYLTLKNGIQVADRVY 760
Query: 507 SFLAFSSSQLRDCSAWFFSE-----DGKTS--VLDIKKWMGRFTDK-NIAKCAARMGQCF 558
SFL +S+SQ+RD + ++ G+ + V DI+ WMG F D ++ K +RMGQCF
Sbjct: 761 SFLGWSNSQMRDQGCYLYAPRVNALTGEVTGTVEDIRVWMGDFRDAISVPKMMSRMGQCF 820
Query: 559 SSTYATVEVPPTE--VDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAY 616
+ TV + V+P++ N Y FSDG G+I+ LA +++ L+L P C +
Sbjct: 821 TQAQPTVRLERHHWIVEPDIEGGVENKYCFSDGCGRISIKLATHISKILQLK-EVPAC-F 878
Query: 617 QIRYAGCKGVVACWPAKGDGIRMS---LRESMNKF-----QSHHTTLEICSWTRFQPGFL 668
Q+R+ G KG++ P D I M R+S KF + LE+ + P L
Sbjct: 879 QVRFKGFKGILVIDPTIDDIINMPKVIFRKSQQKFGEGGGELQDEYLEVVKYAMPSPVCL 938
Query: 669 NRQIITLLSTLN----------VPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAA-CAE 717
NR IT+L ++ + + + + ++ + S N ++ ++ A E++ A
Sbjct: 939 NRPFITILDQVSEKQSASSHRRITNRVHYYLERELCSLSNMLINENQAAEELVNRTNLAI 998
Query: 718 QGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELG 775
N A+ AGF +P +R ML I + KA+IF+P GR + G +DE G
Sbjct: 999 DWNAAS--KRAGFELSVDPLIRDMLFSIYRYNIIHHISKAKIFLPPSLGRSMYGVVDETG 1056
Query: 776 VLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIK-GFVVIAKNPCLHPGDIRILEAV 834
+L+ GQ FIQ S P + +T ++K G V+I KNPC PGD+R+ +AV
Sbjct: 1057 LLQYGQVFIQYS-PSI-----------RQTSNRPILKTGKVLITKNPCHVPGDVRVFDAV 1104
Query: 835 DHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAA 894
P L HL D +VFPQ G RPH +E +GSDLDGD Y + WD+ ++ + M + ++
Sbjct: 1105 WQPALAHLVDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQEMLLDYNEE--AMVFPSS 1162
Query: 895 EAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATA 954
A + D++EFF +++ +++G + +AH+ +AD +G ENC +A A A
Sbjct: 1163 SAAEEDKEPTTDDMVEFFLRYLQQDSIGRMSHAHLAYADL--HGLFHENCHAIALKCAVA 1220
Query: 955 VDFPKTG-KIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSE 1013
VDFPK+G + + + ++ PD+M Y S ++ G+L+R+++ E++ E
Sbjct: 1221 VDFPKSGVPAEPLSSFEQCEMTPDYMMSGGKPMYYSTRLNGQLHRKARKV--EEVLEEFE 1278
Query: 1014 VDINPVDIHYDTDLEVPESVDF-------IADAWNQKCSYDGQLNGLLEQYKVNREEELV 1066
+ + YD L PE VD + + Y ++ LL++Y + E +V
Sbjct: 1279 TRGSVFEREYDK-LICPEDVDVFFGNEIKLVQTLTLRDEYVDRMQQLLDEYGIEDEASVV 1337
Query: 1067 TGHIWSMPKYNSRKQGELK-----ERLKHSYSALRKEFR-QVFEKMDSDCELLSEDEKNA 1120
+GH S+ + ++ + + ++ Y L FR + FE+ + + D KN
Sbjct: 1338 SGHAASIKRLAGMERDDYSFYHTDKVVELRYEKLYAVFRAKFFEEFGGEEINIENDGKNT 1397
Query: 1121 LFE------RKASAWYQVTYHPEWVKKS 1142
+ K WY V Y + K+
Sbjct: 1398 RLKCTKAMHEKIRQWYFVAYVQPKINKA 1425
Score = 44 (20.5 bits), Expect = 1.2e-66, Sum P(3) = 1.2e-66
Identities = 23/95 (24%), Positives = 37/95 (38%)
Query: 187 EHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDML 246
+HA + VR +V S + +I +Q+ + P +W + I +L
Sbjct: 398 DHAGFRLNLYYNLFVR---IVVDMSHETTNSIYIQMKNPPHLWEGIPKNTIFHPSKSKVL 454
Query: 247 DDDD--PWIRTTDFTPSGAIGR---CNSYRISISS 276
+ + W R + P A GR C S S SS
Sbjct: 455 NMETCTEWTRVLSW-PGDAEGRGVGCTSEAFSQSS 488
Score = 37 (18.1 bits), Expect = 1.2e-66, Sum P(3) = 1.2e-66
Identities = 16/74 (21%), Positives = 29/74 (39%)
Query: 1119 NALFERKASAWYQVTYHPEWVKKSLDLQEQDSARS----VVLLSFA-WIANDYLARIK-I 1172
N + + S T +W+ K D E R+ ++L F ++A+ A + I
Sbjct: 1551 NPTIDYEKSLLMPTTMFQQWISKKEDADEAPILRNFDMGTMMLEFLRYLASQSFASAESI 1610
Query: 1173 RCREMANIDTSKPV 1186
R D +P+
Sbjct: 1611 SLRVFYEKDIVEPI 1624
>DICTYBASE|DDB_G0291249 [details] [associations]
symbol:rrpB "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0291249
GO:GO:0005524 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 KO:K11699
PANTHER:PTHR23079 RefSeq:XP_635263.1 ProteinModelPortal:Q54EH7
EnsemblProtists:DDB0220017 GeneID:8628208 KEGG:ddi:DDB_G0291249
InParanoid:Q54EH7 OMA:NINERTN ProtClustDB:CLSZ2429575
Uniprot:Q54EH7
Length = 2403
Score = 399 (145.5 bits), Expect = 9.5e-65, Sum P(3) = 9.5e-65
Identities = 130/450 (28%), Positives = 212/450 (47%)
Query: 735 EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNC 794
+P++R +L + ++ +++K I + R L+G D L F+Q+ E +
Sbjct: 1502 DPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSLPPNTVFVQLEEEDEDD- 1560
Query: 795 FSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDR 854
G ++ + VI+G V++ KNPC HPGD+R L+AVD+ L HL + LVF KGD
Sbjct: 1561 --DDGRKYEK-----VIEGLVMVIKNPCTHPGDVRYLKAVDNLRLRHLRNVLVFSTKGDV 1613
Query: 855 PHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPP------MEYNAAEAKTLTRPVDQRDI 908
P+ E SGSDLDGD YF +D++LI KS + N +A P +
Sbjct: 1614 PNFKEISGSDLDGDRYFFCYDKSLIGNRSKSETAYLGDETVSNNDKKANVFNDPFA---L 1670
Query: 909 IEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPA 968
++ ++ + LG + N+H+ +D +GA E I +++ +D+PKTG T+P
Sbjct: 1671 SSMYSTNVERQELGKMYNSHLAISDL--FGANHEFSIQISKECFKEIDYPKTGIHGTIPK 1728
Query: 969 H----LKPKLYPDFMGKEAYQS--YKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIH 1022
LK K YP +M +E Y+S I+G++Y D D+ + + D P +I
Sbjct: 1729 EANVWLKTKGYPHYMQRENSTRVYYQSKTIMGKMY----DQIDQLVYIG---DFLP-NIS 1780
Query: 1023 YDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQG 1082
D V + ++ A Y Q++ LL Y EE ++ G + + +
Sbjct: 1781 LDKSNLVDDYEIYLNSAKILYSQYKLQVHSLLRHYSAESEESIMIGFL-DQGFISDKVSK 1839
Query: 1083 ELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALF------ERKASAWYQVTYHP 1136
++K +K+ Y +++ F F K E + ++N L E+K SAWY V Y
Sbjct: 1840 DIKGEMKNDYIKIQQTFENEFLK-----EFGEQHKENCLLIHRVNIEKKVSAWYHVAYS- 1893
Query: 1137 EWVKKSLDLQEQDSARSVVLLSFAWIANDY 1166
DL++ D A L F WIA +
Sbjct: 1894 -------DLKD-DRA-----LGFYWIARSF 1910
Score = 357 (130.7 bits), Expect = 9.5e-65, Sum P(3) = 9.5e-65
Identities = 95/304 (31%), Positives = 157/304 (51%)
Query: 490 RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAK 549
R++ IL GG + G+ +S+ S+SQLR+ S+WF S T +K W G N+ K
Sbjct: 1266 RIKPILEGGILVGGKIYSYAGNSNSQLREYSSWFVSNQIGTHT--VKIWSGIEHVDNVRK 1323
Query: 550 CAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV 609
+G FS+T TV +P + + DI RN +VF++G G+I P+LA + +
Sbjct: 1324 FFRCIGLMFSTTIPTVTLPQNRIY-RIQDITRNTHVFTEGCGEIGPELAKHLNENYNF-- 1380
Query: 610 NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQ-----SHHTTLEICSWTRFQ 664
P CAYQ+R G KG++ D + +R SM KF H TLEICS +
Sbjct: 1381 RPSTCAYQVRIGGNKGMLVVNNQAPDPSGIYIRPSMVKFNPIVCGDEHRTLEICSVSTTS 1440
Query: 665 PGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI 724
LNRQ+I+LLSTL D +F+++QD L+++ Q++ D++ + + + +
Sbjct: 1441 RCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNASKQAIVEFFPD------- 1493
Query: 725 MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI 784
++ G Q +P++R +L + ++ +++K I + R L+G D L F+
Sbjct: 1494 -ITEGELYQ-DPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSLPPNTVFV 1551
Query: 785 QVSE 788
Q+ E
Sbjct: 1552 QLEE 1555
Score = 63 (27.2 bits), Expect = 9.5e-65, Sum P(3) = 9.5e-65
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 395 LKDPELYKGPKQID----DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRV 450
L DP Y K + + +R + ITP++ + P ++ S R +RK+ + F+ V
Sbjct: 1187 LPDP-YYAKKKDLSTKSGEFTMIRDVFITPSRTIFIQPTLQRSCRAVRKFG--SSNFIMV 1243
Query: 451 TFMDEGLQTM 460
++E L+ +
Sbjct: 1244 KIVNESLEPL 1253
Score = 37 (18.1 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 545 KNIAKCAARM-GQCFSSTYATVEVPPTEVDPELPDIKRNG 583
++I RM + F T +E+ PEL K +G
Sbjct: 452 RSIKDMEERMLSRVFKPTSLLTNSTQSELQPELVSFKTSG 491
>DICTYBASE|DDB_G0289659 [details] [associations]
symbol:rrpA "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0289659
GO:GO:0005524 GenomeReviews:CM000154_GR GO:GO:0003676
EMBL:AAFI02000148 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_636093.1
ProteinModelPortal:Q54H25 EnsemblProtists:DDB0191515 GeneID:8627305
KEGG:ddi:DDB_G0289659 InParanoid:Q54H25 Uniprot:Q54H25
Length = 2417
Score = 691 (248.3 bits), Expect = 1.7e-64, Sum P(2) = 1.7e-64
Identities = 209/697 (29%), Positives = 342/697 (49%)
Query: 490 RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAK 549
R++ IL GG + G +S+ S+SQLR+ S+WF S T +K W G N+ K
Sbjct: 1251 RIKPILEGGILVGGEIYSYAGNSNSQLREYSSWFVSNQIGTHT--VKIWSGIEHVDNVRK 1308
Query: 550 CAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV 609
+G FS+T TV +P + + DI RN + F++G G+I P+LA + +
Sbjct: 1309 FFRCIGLMFSTTIPTVTLPQNRIY-RIQDITRNTHEFTEGCGEIGPELAKHLNENYNF-- 1365
Query: 610 NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQ-----SHHTTLEICSWTRFQ 664
P CAYQ+R G KGV+ D + +R SM KF H TLEICS +
Sbjct: 1366 RPSTCAYQVRIGGNKGVLVVNNQAPDPSGIYIRPSMVKFNPIDCGDEHRTLEICSVSTTS 1425
Query: 665 PGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI 724
LNRQ+I+LLSTL D +F+++QD L+++ Q++ D++ + + + +
Sbjct: 1426 RCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNASKQAIVEFFPD------- 1478
Query: 725 MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI 784
++ G Q +P++R +L + ++ +++K I + R L+G D L F+
Sbjct: 1479 -ITEGELYQ-DPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSLPPNTVFV 1536
Query: 785 QVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD 844
Q+ E + G ++ + VI+G V++ KNPC HPGD+R L+AVD+ L HL +
Sbjct: 1537 QLEEEDEDD--DDDGRKYEK-----VIEGLVMVIKNPCTHPGDVRYLKAVDNIRLRHLRN 1589
Query: 845 CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI---PPSKKSWPPMEYNAAEAKTLTR 901
LVF KGD P+ E SGSDLDGD YF +D++LI S+ ++ +E + K
Sbjct: 1590 VLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSESETAYLVVETVSNNDKKANV 1649
Query: 902 PVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
D + ++ + + LG + ++H+ +D +YGA + I +++ +D+PKTG
Sbjct: 1650 FNDPFALSSMYSTNAERQELGKLYHSHLAISD--QYGANHKYSIQISKECFKEIDYPKTG 1707
Query: 962 KIVTMPAHLKPKL----YPDFMGKEAYQS--YKSNKILGRLYRQSKDAYDEDISVSSEVD 1015
T+P + +L YP +M +E Y+S KI+G++Y D D+ + + D
Sbjct: 1708 IHGTIPKEVNIRLQTVGYPHYMQRENSTRVYYQSKKIMGKMY----DQIDQLVYIG---D 1760
Query: 1016 INPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPK 1075
P +I D V ++ A Y Q++ LL Y EE ++ G +
Sbjct: 1761 FLP-NISLDKSNLVDGYEIYLNSAKILYSQYKLQVHSLLRHYSAESEESIMIGFL-DQGF 1818
Query: 1076 YNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALF------ERKASAW 1129
+ + ++K +K+ Y +++ F F K E + ++N L E+K SAW
Sbjct: 1819 ISDKVSKDIKGEMKNDYIKIQQTFENEFLK-----EFGEQHKENCLLIHRVNIEKKVSAW 1873
Query: 1130 YQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDY 1166
Y V Y DL++ D A L F WIA +
Sbjct: 1874 YHVAYS--------DLKD-DRA-----LGFYWIARSF 1896
Score = 61 (26.5 bits), Expect = 1.7e-64, Sum P(2) = 1.7e-64
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 395 LKDPELYKGPKQID----DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRV 450
L DP Y K + + +R + ITP++ + P ++ S R +RK+ + F+ V
Sbjct: 1172 LPDP-YYAKKKDLSTKSGEFTMIRDVFITPSRTIFIQPTLQRSCRAVRKFG--SSNFIVV 1228
Query: 451 TFMDEGLQTM 460
++E L+ +
Sbjct: 1229 KIVNESLEPL 1238
>WB|WBGene00001214 [details] [associations]
symbol:ego-1 species:6239 "Caenorhabditis elegans"
[GO:0007186 "G-protein coupled receptor signaling pathway"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0007276 "gamete generation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IGI] [GO:0031081
"nuclear pore distribution" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0070090 "metaphase plate"
evidence=IDA] InterPro:IPR007855 Pfam:PF05183 GO:GO:0009792
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0010171
GO:GO:0048477 GO:GO:0007283 GO:GO:0000910 GO:GO:0007281
GO:GO:0000794 GO:GO:0043186 GO:GO:0031081 EMBL:Z78419 GO:GO:0003968
PANTHER:PTHR23079 BRENDA:2.7.7.48 GeneTree:ENSGT00390000016620
EMBL:AF159143 PIR:T21381 RefSeq:NP_492132.1 UniGene:Cel.23243
ProteinModelPortal:G5EBQ3 IntAct:G5EBQ3 EnsemblMetazoa:F26A3.3
GeneID:172524 KEGG:cel:CELE_F26A3.3 CTD:172524 WormBase:F26A3.3
OMA:LRSMMEN NextBio:875891 GO:GO:0070090 Uniprot:G5EBQ3
Length = 1632
Score = 480 (174.0 bits), Expect = 6.7e-60, Sum P(2) = 6.7e-60
Identities = 127/400 (31%), Positives = 216/400 (54%)
Query: 729 GFNPQTEPHLRGMLTC-IRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFIQ 785
GF +EP R ++ I+ + LR K +I +P GR ++G +DE G L+ GQ F+Q
Sbjct: 844 GFTLSSEPFFRSLIKASIKFSITRQLR-KEQIPIPCDLGRSMLGVVDETGRLQYGQIFVQ 902
Query: 786 VSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDC 845
++ K+ +R QV+ G V++ KNPC+ GD+RI EAVD PELHH+ D
Sbjct: 903 YTKNLALKLPPKNAAR-------QVLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMCDV 955
Query: 846 LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQ 905
+VFPQ G RPH +E +GSDLDGD Y + WD+ L+ K+ P ++ + + K + +
Sbjct: 956 VVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLL--LDKNEDPYDFTSEKQKASFKEDEI 1013
Query: 906 RDII-EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG--- 961
D++ EF+ K++ +++G I N+H+ ++D +YG C+ LA+ AVDF K+G
Sbjct: 1014 DDLMREFYVKYLKLDSVGQISNSHLHNSD--QYGLNARVCMDLAKKNCQAVDFTKSGQPP 1071
Query: 962 --------KIVTMPAHLKPKL---YPDF-MGKEAYQSYKSNKILGRLYRQSKDAYDEDIS 1009
K + P+ PD+ MG + Y S ++ G+L+R+ K A D+ +
Sbjct: 1072 DELERKWRKDEETGEMIPPERAERVPDYHMGNDHTPMYVSPRLCGKLFREFK-AIDDVLK 1130
Query: 1010 VSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGH 1069
+S E D V+I D +++ +++A A N Y+ QL ++E Y + E E+ +G
Sbjct: 1131 ISEERD-EQVEISIDETIKIDGYTEYMASAKNDLARYNAQLRSMMENYGIKTEGEVFSGC 1189
Query: 1070 IWSMP-KYNSRKQGELK-----ERLKHSYSALRKEFRQVF 1103
I M + + + Q ++ + ++ + L K++R++F
Sbjct: 1190 IVDMRNRISDKDQDDMSFFNTNQMIETKLTNLFKKYREIF 1229
Score = 231 (86.4 bits), Expect = 6.7e-60, Sum P(2) = 6.7e-60
Identities = 78/270 (28%), Positives = 126/270 (46%)
Query: 413 VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
VR+++ TPT+ + PE + NRVLR+Y R LR+TF D+ Q M N S +
Sbjct: 491 VRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTSTMLEKT 550
Query: 473 VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKT-- 530
V N + R F + S S + +SSSQ R+ + + T
Sbjct: 551 VNQYLKNGITVAGRNFGYLGS--SNSQMRDNGAYFMEKYSSSQCREYERIYQIKPPITFN 608
Query: 531 -SVLDIKKWMGRF-TDKNIAKCAARMGQCFS-STYATVEVPP----TEVD-PELPDIKRN 582
+ +K +GRF T NI K AR+GQCF+ S + V + T D ++K +
Sbjct: 609 PKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLERCTYMTTYDLTGGKNLKGD 668
Query: 583 GYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRM-SL 641
Y FSDG+G ++ A V++ + P C +Q R+ G KGV++ P D +R S+
Sbjct: 669 EYTFSDGVGMMSYRFAQMVSEVMDFGKGVPSC-FQFRFRGMKGVISIEPLL-DNLRQWSI 726
Query: 642 RESMNKFQSHHTTLEICSWTRFQPGFLNRQ 671
+++K + C + Q F++++
Sbjct: 727 SYNISKPSDDSSWSLNCMFRPSQIKFISKR 756
Score = 174 (66.3 bits), Expect = 4.3e-27, Sum P(2) = 4.3e-27
Identities = 57/228 (25%), Positives = 115/228 (50%)
Query: 959 KTGKIVTMPAHLKPKLYPDF-MGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDIN 1017
+TG+++ P ++ PD+ MG + Y S ++ G+L+R+ K A D+ + +S E D
Sbjct: 1083 ETGEMI--PPERAERV-PDYHMGNDHTPMYVSPRLCGKLFREFK-AIDDVLKISEERD-E 1137
Query: 1018 PVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMP-KY 1076
V+I D +++ +++A A N Y+ QL ++E Y + E E+ +G I M +
Sbjct: 1138 QVEISIDETIKIDGYTEYMASAKNDLARYNAQLRSMMENYGIKTEGEVFSGCIVDMRNRI 1197
Query: 1077 NSRKQGELK-----ERLKHSYSALRKEFRQVF-EKMDSDCELLSEDEKNALFERKASAWY 1130
+ + Q ++ + ++ + L K++R++F E+ + E E + + R ++
Sbjct: 1198 SDKDQDDMSFFNTNQMIETKLTNLFKKYREIFFEEFEGGWE--GNTEAFSRYGRDSNILQ 1255
Query: 1131 QVTYHP--EWVKKSLD-----LQEQDSARSVVLLSFAWIANDYLARIK 1171
+ P + +KK++ +E R LSFAW+A D +A++K
Sbjct: 1256 RQCRAPTVQMMKKAVAWYRACYEEARITRENKKLSFAWLAYDVIAKVK 1303
Score = 44 (20.5 bits), Expect = 3.1e-40, Sum P(2) = 3.1e-40
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 466 SYFIAPIVRDITLNSFSQKTRV 487
++F API RD +F +K V
Sbjct: 359 THFSAPIYRDFITTAFPKKHEV 380
>WB|WBGene00004508 [details] [associations]
symbol:rrf-1 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS;IDA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] [GO:0005844
"polysome" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] InterPro:IPR007855 Pfam:PF05183
GO:GO:0005634 GO:GO:0048471 GO:GO:0005844 GO:GO:0030422 EMBL:Z78419
GO:GO:0003968 PANTHER:PTHR23079 UniGene:Cel.19452 GeneID:172523
KEGG:cel:CELE_F26A3.8 CTD:172523 GeneTree:ENSGT00390000016620
EMBL:AF159144 RefSeq:NP_001250555.1 ProteinModelPortal:G5ECM1
EnsemblMetazoa:F26A3.8a WormBase:F26A3.8a OMA:QIQIPKE
NextBio:875887 Uniprot:G5ECM1
Length = 1601
Score = 476 (172.6 bits), Expect = 8.4e-60, Sum P(4) = 8.4e-60
Identities = 126/402 (31%), Positives = 214/402 (53%)
Query: 729 GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFIQV 786
GF +EP R ++ + K +I +P+ GR ++G +DE G L+ GQ F+Q
Sbjct: 812 GFTLSSEPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSMLGVVDETGRLQYGQIFVQY 871
Query: 787 SEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCL 846
++ + + + + +++ G V++ KNPC+ PGD+RI EAVD PELHH+ D +
Sbjct: 872 TKNYKKKLPPRDSNN--KVHGSEIVTGTVLLTKNPCIVPGDVRIFEAVDIPELHHMCDVV 929
Query: 847 VFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQR 906
VFPQ G RPH +E +GSDLDGD Y V WD+ L+ +++ P ++ + K P D+
Sbjct: 930 VFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELL--LERNEEPFDFAVEKIKV---PYDRE 984
Query: 907 --DII--EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGK 962
D++ EF+ ++ +++G I N+H+ ++D +YG C+ LA+ AVDF K+G+
Sbjct: 985 KLDVLMREFYVTYLKLDSVGQISNSHLHNSD--QYGLNSRVCMDLAKKNCQAVDFTKSGQ 1042
Query: 963 ----IVTM----PAHLK------PKLYPDF-MGKEAYQSYKSNKILGRLYRQSKDAYDED 1007
+ T P + P+ PDF MG E Y S ++ G+L+R+ + A D
Sbjct: 1043 PPDPLETKWRADPVTFEVIPPENPERIPDFHMGNERSPMYVSPRLCGKLFREFQ-AIDNV 1101
Query: 1008 ISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVT 1067
I +S E D +I D + V ++ A Q SY+GQL ++E Y + E E+++
Sbjct: 1102 IKISEERD-EQYNIELDETIFVTGFERYMESAQKQLSSYNGQLRSIMENYGIRSEGEIMS 1160
Query: 1068 GHIWSMP-KYNSRKQGELK-----ERLKHSYSALRKEFRQVF 1103
G I M + + + Q ++ + ++ ++L +FR+ F
Sbjct: 1161 GCIVEMRNRISDKDQDDMSFYNTNQMIETKMTSLVCKFRETF 1202
Score = 254 (94.5 bits), Expect = 8.4e-60, Sum P(4) = 8.4e-60
Identities = 96/350 (27%), Positives = 166/350 (47%)
Query: 309 PDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLS------DSFFDLLRGQS 362
P +E+ + D ++ E F I +L+ ++ +G I + QL +F +++
Sbjct: 349 PKYEI-VDDKLIDVNEER--KFSITYLIECLLSRGAIVKDQLLLNEQHWKNFLEIIIWYY 405
Query: 363 REVNV---AALK---HIYSYKWPVFDACKRL-KLVQEW-LLKDPELYKGPKQIDDIVEVR 414
R N AAL+ H+ + + K L K+ Q+ ++K + I+ VR
Sbjct: 406 RNDNQLCEAALEDLVHLIDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESIEGYQRVR 465
Query: 415 RLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVR 474
+++ TPT+ + PE + NRVLRK+ R LRVTF D+ + M +NV +
Sbjct: 466 KVIFTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLL----- 520
Query: 475 DITLNSFSQK-TRVFKRVRSIL--SGGFYLCGRKFSFLAFSSSQLR---DCSAWFFSEDG 528
D T N + + R+ R L S + + F+ QL C+ + +
Sbjct: 521 DRTANKYLEHGVRIANREYGFLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCNPTASNINF 580
Query: 529 KTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYAT-VEVPPTEVDP--ELPDIKR-NG 583
K + +++ +GRF++ +N+ K AR+GQCF+ + T V + + +L + NG
Sbjct: 581 KPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLTGVGLGRDDYCSTYDLTGGRATNG 640
Query: 584 --YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP 631
Y FSDG+G ++ A EV+Q ++ P C +QIR+ G KGV+A P
Sbjct: 641 SEYTFSDGVGMMSYQFAQEVSQAMQFGKAVPSC-FQIRFRGNKGVIAIEP 689
Score = 184 (69.8 bits), Expect = 2.0e-28, Sum P(4) = 2.0e-28
Identities = 63/214 (29%), Positives = 102/214 (47%)
Query: 972 PKLYPDF-MGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVP 1030
P+ PDF MG E Y S ++ G+L+R+ + A D I +S E D +I D + V
Sbjct: 1066 PERIPDFHMGNERSPMYVSPRLCGKLFREFQ-AIDNVIKISEERD-EQYNIELDETIFVT 1123
Query: 1031 ESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMP-KYNSRKQGELK---- 1085
++ A Q SY+GQL ++E Y + E E+++G I M + + + Q ++
Sbjct: 1124 GFERYMESAQKQLSSYNGQLRSIMENYGIRSEGEIMSGCIVEMRNRISDKDQDDMSFYNT 1183
Query: 1086 -ERLKHSYSALRKEFRQVF-EKMDS---DCELLSE--DEKNALFERKASAWYQVTYHP-E 1137
+ ++ ++L +FR+ F E+ C LL D N L R +V
Sbjct: 1184 NQMIETKMTSLVCKFRETFFEEFGGFTVKCTLLPNAYDNGNCLNYRCEDPDQEVRKKAVA 1243
Query: 1138 WVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
W + + + S R V LSFAWIA D +A++K
Sbjct: 1244 WYRACYECAQ--STREVRKLSFAWIAYDVIAKVK 1275
Score = 40 (19.1 bits), Expect = 8.4e-60, Sum P(4) = 8.4e-60
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 236 DILVLVPFD----MLDDDDPWIRTTD 257
D+ V VP+ +L D W+RT D
Sbjct: 88 DLNVYVPYQRPNIVLHGSDFWLRTLD 113
Score = 39 (18.8 bits), Expect = 8.4e-60, Sum P(4) = 8.4e-60
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 291 ERRVQVDSLSRPITIREEPDFEVPMSD-PFFCIHYEEGISFEIMFLV 336
ER+ + D R + + ++D PFF I + + IS + M+ V
Sbjct: 246 ERQKRFDCDWRNGNVNHGNPQDAAIADSPFFTIEFHKEISTKEMYRV 292
>ASPGD|ASPL0000040001 [details] [associations]
symbol:rrpC species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR007855 Pfam:PF05183
EMBL:BN001306 GO:GO:0003968 eggNOG:NOG307726 KO:K11699
PANTHER:PTHR23079 EMBL:AACD01000048 RefSeq:XP_660321.1
EnsemblFungi:CADANIAT00010398 GeneID:2874470 KEGG:ani:AN2717.2
HOGENOM:HOG000166092 OMA:KHKARIP OrthoDB:EOG4VMJPG Uniprot:Q5B9R3
Length = 1203
Score = 613 (220.8 bits), Expect = 4.4e-57, Sum P(2) = 4.4e-57
Identities = 235/831 (28%), Positives = 386/831 (46%)
Query: 238 LVLVPFDMLDDDDPWIR-TTDFTPSGAI-GRCNSYR---ISISSRHRGKLSKVITY-LG- 290
LV VP D IR T+ P A+ G+C Y+ +S SS R ++ KV Y L
Sbjct: 193 LVTVPLFFQCDGHSRIRLTSPGGPQAAVVGQCLVYQFQVVSSSSNLRARMGKVAEYDLSV 252
Query: 291 ---ERRV--QVDSLSRPITIREEPDFEVPMSD--PFFCIHYEEGISFEIMFLV-NAVMHK 342
E + DS +T+ + E + PF GI F++ LV N +
Sbjct: 253 INYEFKTVHNFDSWQSQLTLLRDRLGEYTRAGTLPF-------GILFQLQALVYNGYLPP 305
Query: 343 GIINQ--HQLSDSFFDLLRGQSRE-VNVAALKHIYSY-KWPV-FDACKR--LKLVQEWLL 395
I+ + +L+ S + Q R ++V ++K +++ WP F + +K + E +
Sbjct: 306 NIVLRLTRKLA-SITKTRKVQGRRPISVNSMKRLFNLIDWPSPFGDPEEFSIKRLLEVIT 364
Query: 396 -KDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMD 454
D +L +G + + + + + + P + L + + L +R LR F +
Sbjct: 365 GNDKDLGEGASEAEALFQPAPHLAHIHRVVVTPSRITLHGP---ETEPL-NRILR-RFPN 419
Query: 455 EGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSS 514
+ F DI N + +F R +++ + GF + GR ++FL FS S
Sbjct: 420 HHEYFIRVQ----FCDENGEDIYFNPRINNSLIFARFKNVFANGFQIAGRTYTFLGFSHS 475
Query: 515 QLRDCSAWF----FSEDGKT-SVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVP 568
LR SAWF +DG S I K +GRF++ + A+CAAR+GQ FS T V +
Sbjct: 476 SLRSRSAWFSAPFIDDDGSLQSYFTIIKAIGRFSEITSPARCAARIGQAFSETPFAVNLK 535
Query: 569 PTEVDP-ELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVV 627
+ +PD++ G VFSDG+G I+ A+++ + N P +QIR G KG++
Sbjct: 536 ENGIRVLRIPDVQVGGRVFSDGVGTISAK-AVDIIHGVLPPRNGAPTCFQIRLGGAKGML 594
Query: 628 ACWPAKGDGIRMSLRESMNKFQSH-HTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEM 685
+ P + G ++ +R SM KFQ+ +EIC S ++ P FLNRQ+I +L + V E
Sbjct: 595 SLDP-RLRGSKICIRPSMTKFQTDDQVNVEICGSGSKPIPLFLNRQVIKILEDMGVDREW 653
Query: 686 FWSMQDSMLSKLNQMLVDS-DVAFEVL---TAACAEQGNTAAIMLSAGFNPQTEPHLRGM 741
F ++Q+ + +L + + + A V A C + + + + + P LR +
Sbjct: 654 FMTLQELRIEQLRKATATTKNTATFVKGQSVADCVKLYRLFLLFHNLKLDYKKIPFLRAV 713
Query: 742 LTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSR 801
+ + +L L+ KARI V G L G +DE G L + F+ R
Sbjct: 714 VEAMVLRELRLLKHKARIPVHKGITLYGVMDETGFLNENEVFVTYQAM----------DR 763
Query: 802 FAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLY---DCLVFPQKGDRPHTN 858
A Q + +++ ++P LH GDI+ V P+ H L +C+VF QKG R +
Sbjct: 764 LAAPP--QNCR--LLVTRSPALHNGDIQYPYNVVPPKGHPLQQQRNCIVFSQKGTRDLPS 819
Query: 859 EASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVN 918
+ SG DLDGDLY + WD P K+ + P Y + R V++ D+ FF + M +
Sbjct: 820 QLSGGDLDGDLYNIIWDPAAAP--KRVFTPANYPRNPPLDIKRVVEREDMANFFVEFMQS 877
Query: 919 ENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG---KIVTMPAHLKPKLY 975
+ LG I H++ AD E G +C LA+L +TAVDF KTG ++ MP + +
Sbjct: 878 DRLGVIATKHMILADQMELGTSHSDCKKLAQLHSTAVDFSKTGIPVRLKEMPFVNRSR-- 935
Query: 976 PDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTD 1026
PDF+ + + +L + Y +D ++D +PV +Y ++
Sbjct: 936 PDFLAPGPLAKIHDRQNI-QLEARYVHPYPDD-----DIDFSPVHKYYRSE 980
Score = 60 (26.2 bits), Expect = 4.4e-57, Sum P(2) = 4.4e-57
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 975 YPD--FMGKEAYQSYKSNKILGRLYR--QSKDAYDEDISVSSEVDINPVDI 1021
YPD ++ Y+S KILG+LYR + + +DI + V+ NP +
Sbjct: 963 YPDDDIDFSPVHKYYRSEKILGKLYRAINEHEIWTKDIHTT--VNSNPTAV 1011
Score = 37 (18.1 bits), Expect = 1.2e-54, Sum P(2) = 1.2e-54
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 1170 IKIRCREMANIDTSKPVNYLA 1190
I +R +EM ++ S+P ++LA
Sbjct: 921 IPVRLKEMPFVNRSRP-DFLA 940
>WB|WBGene00004509 [details] [associations]
symbol:rrf-2 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] InterPro:IPR007855 Pfam:PF05183 GO:GO:0003968
PANTHER:PTHR23079 GeneTree:ENSGT00390000016620 EMBL:AL132848
EMBL:Z81571 RefSeq:NP_493057.1 ProteinModelPortal:G5EFA8
EnsemblMetazoa:M01G12.12 GeneID:173092 KEGG:cel:CELE_M01G12.12
CTD:173092 WormBase:M01G12.12 NextBio:878243 Uniprot:G5EFA8
Length = 1579
Score = 439 (159.6 bits), Expect = 1.0e-55, Sum P(2) = 1.0e-55
Identities = 121/400 (30%), Positives = 207/400 (51%)
Query: 729 GFNPQTEPHLRGMLTC-IRAAQLWGL-REKARIFVPAGRWLMGCLDELGVLEGGQCFIQV 786
GF EP R ++ I+ A L +E+ +I GR ++G +DE G+L+ GQ F+Q
Sbjct: 793 GFTLSNEPFFRSLVKASIKFAITKQLFKEQIQIPSELGRSMLGVVDETGILQYGQVFVQY 852
Query: 787 SEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCL 846
++ + +R + +++ G V++ KNP + PGD+RI EAVD PELHHL D +
Sbjct: 853 TKNHRNILPPRDSNR--KVLGSEIVTGTVLLTKNPGIVPGDVRIFEAVDIPELHHLCDVV 910
Query: 847 VFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQR 906
VFPQ G RPH +E +GSDLDGD Y V WD+ L+ +++ ++ A E T +
Sbjct: 911 VFPQHGPRPHPDEMAGSDLDGDEYSVIWDQKLL--LERNEEAFDF-AVEKNLQTYEWEDI 967
Query: 907 DII--EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGK-- 962
D + + + +++ + +G I N+H+ ++D +YG C+ LA+ + AVDF K+GK
Sbjct: 968 DDLMRDVYVEYLKKDLVGLIANSHLHNSD--QYGLTSRVCMNLAKKSCQAVDFSKSGKPP 1025
Query: 963 --IVTM------PAHLKP----KLYPDF-MGKEAYQSYKSNKILGRLYRQSKDAYDEDIS 1009
+ T + P + PD+ +G + Y S ++ G+L+R+ + D +
Sbjct: 1026 DELQTTWKTDDATGEMIPPERAERVPDYHVGSDHMPKYVSPRLCGKLFREFQ-GIDNAMK 1084
Query: 1010 VSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGH 1069
+S E I D + V +++ DA Q SY+GQL ++ Y + E E+++G
Sbjct: 1085 ISEEKS-EQYKIEVDESIRVDGFEEYMEDAKKQLASYNGQLKSTMDTYGIQSEGEIMSGC 1143
Query: 1070 IWSMP-KYNSRKQGELK-----ERLKHSYSALRKEFRQVF 1103
I M + + Q ++ ++ +AL +FR +F
Sbjct: 1144 IIEMRNRISDSDQDDMSFYNTNRMIETKMTALVSKFRTIF 1183
Score = 233 (87.1 bits), Expect = 1.0e-55, Sum P(2) = 1.0e-55
Identities = 89/335 (26%), Positives = 156/335 (46%)
Query: 322 IHYEEGISFEIMFLVNAVMHKGIINQHQ-LSDS-----FFDLLRG---QSREVNVAALKH 372
I+ +G F I +L+ ++ +G I + Q L+D F L+ ++ ++ AAL+
Sbjct: 345 INENDGRQFAITYLIECLLSRGAIVKDQVLTDEICWGQFLGLITHYYLENDKLCEAALED 404
Query: 373 IYSYKWPVFDACKRL--------KLVQEWLLKDPELYKGPKQIDDIVE-VRRLVITPTKA 423
+ Y + D KR+ K+ Q+ L+ ++I++ + VR+++ TPT+
Sbjct: 405 LI-Y---LIDGRKRIGSIWKCFHKICQKRLVMQLTNGMSEQEIEEGYQRVRKVIFTPTRV 460
Query: 424 YCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQ 483
PPE+ + NRVLR + LRVTF D+ + M AN + V+ +
Sbjct: 461 IYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRANATGELLDICVKKYLEHGIVV 520
Query: 484 KTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFT 543
R F L ++ ++ R +A + K ++ ++ +G F
Sbjct: 521 ANRDF----GFLGCSSSQMRDNGAYFMVKNTDNRHKNACKMNSKFKPNIDSVRNQLGNFL 576
Query: 544 D-KNIAKCAARMGQCFSSTYAT-VEVPPTE--VDPELPDIKR-NG--YVFSDGIGKITPD 596
+NI K AR+GQCF+ + T V + P + +L + NG Y FSDG+G ++ +
Sbjct: 577 QIENIPKLMARLGQCFTQSRLTGVSLGPDNYCLTHDLSGGRSSNGSEYTFSDGVGMMSYE 636
Query: 597 LAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP 631
A EV++ + + P C +Q RY G KGV+A P
Sbjct: 637 FAQEVSRLMSFGRSVPSC-FQFRYRGMKGVLAIDP 670
Score = 172 (65.6 bits), Expect = 3.9e-27, Sum P(2) = 3.9e-27
Identities = 77/281 (27%), Positives = 125/281 (44%)
Query: 949 ELAATAVDFPKTGKIVTMPAHLKPKLYPDF-MGKEAYQSYKSNKILGRLYRQSKDAYDED 1007
EL T TG+++ P ++ PD+ +G + Y S ++ G+L+R+ + D
Sbjct: 1027 ELQTTWKTDDATGEMI--PPERAERV-PDYHVGSDHMPKYVSPRLCGKLFREFQ-GIDNA 1082
Query: 1008 ISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVT 1067
+ +S E I D + V +++ DA Q SY+GQL ++ Y + E E+++
Sbjct: 1083 MKISEEKS-EQYKIEVDESIRVDGFEEYMEDAKKQLASYNGQLKSTMDTYGIQSEGEIMS 1141
Query: 1068 GHIWSMP-KYNSRKQGELK-----ERLKHSYSALRKEFRQVFEKM----DSDCELLSE-- 1115
G I M + + Q ++ ++ +AL +FR +F + C LL +
Sbjct: 1142 GCIIEMRNRISDSDQDDMSFYNTNRMIETKMTALVSKFRTIFFQQFGGFQEVCTLLPDAY 1201
Query: 1116 DEKNAL----------FERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIAND 1165
+E N +KA AWY+ Y E K S R LSFAWIA D
Sbjct: 1202 NESNFFNFRCENPNEEIRKKAVAWYRACY--ECAK---------STREPRKLSFAWIAYD 1250
Query: 1166 YLARIK----IRCREMANIDTSKPV-NYL----ARYVADRI 1197
+A+IK + EM NI + P+ YL ARY+ D +
Sbjct: 1251 VIAKIKETKVLENVEM-NIGGANPMYTYLEHHRARYINDHV 1290
Score = 43 (20.2 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 357 LLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKD 397
LL + A K++ +Y+W D R V E+L KD
Sbjct: 943 LLERNEEAFDFAVEKNLQTYEWEDIDDLMRDVYV-EYLKKD 982
Score = 42 (19.8 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 32/140 (22%), Positives = 60/140 (42%)
Query: 21 DRNVKAA-ELVKYL---ENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDD-YEKV 75
D+ +AA E + YL +G +W+C K C + +TN ++ ++ Y++V
Sbjct: 395 DKLCEAALEDLIYLIDGRKRIGSIWKCFHKI-C---QKRLVMQLTNGMSEQEIEEGYQRV 450
Query: 76 EPHAFVHFAMPTYVTRAVDAAGRT--ELFLNG-RALKVSLGPENPFRLNQRGRTSTPFKL 132
F + Y + R +G L+V+ +N N++ R + +L
Sbjct: 451 RKVIFTPTRV-IYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDN----NRKMRANATGEL 505
Query: 133 PDVCV----EIGTLVSRDEF 148
D+CV E G +V+ +F
Sbjct: 506 LDICVKKYLEHGIVVANRDF 525
Score = 40 (19.1 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 100 ELFLNGRALKVSLGPEN 116
+ F R VSLGP+N
Sbjct: 590 QCFTQSRLTGVSLGPDN 606
>DICTYBASE|DDB_G0280963 [details] [associations]
symbol:rrpC "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR007855 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF05183 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280963 GO:GO:0005524
GenomeReviews:CM000152_GR EMBL:AAFI02000040 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_640790.1
ProteinModelPortal:Q54UI6 STRING:Q54UI6 EnsemblProtists:DDB0216193
GeneID:8622843 KEGG:ddi:DDB_G0280963 InParanoid:Q54UI6 OMA:YELFNDY
Uniprot:Q54UI6
Length = 2285
Score = 352 (129.0 bits), Expect = 3.0e-38, Sum P(3) = 3.0e-38
Identities = 123/418 (29%), Positives = 193/418 (46%)
Query: 478 LNSFSQKTRVFKRVRSILSGGFYLC---GRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLD 534
LN S T+ +R I + G + G+K+ F+ S SQ+R+ SAWF ED T+
Sbjct: 1122 LNKSSPLTKTIER---IFNNGIEIIQGSGKKYFFIGCSQSQVRNYSAWFVLEDKVTNEKS 1178
Query: 535 IKKWMG-RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKI 593
W G ++ + K + FS+T + + E+ P++ I + G+ F++G G I
Sbjct: 1179 ALNWSGIKYESLQMIKVFRNLCLLFSTTLKSQVIYKIEMIPDI--ISKEGHNFTEGCGFI 1236
Query: 594 TPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHT 653
L + Q+ + N CAYQIR G KGV+ D + + +R SM+KF+
Sbjct: 1237 GSKLVELINQQN--NYNSSTCAYQIRLGGSKGVLVL-NENIDEMSLQIRPSMSKFE---- 1289
Query: 654 TLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTA 713
L+ ++ G L+ + TL ++ + ++ L+ V+ ++L
Sbjct: 1290 -LD------YKSGQLDEEHKTL-EIVSASTTSRCKLNRQAITLLSNAGVEDSTFLQMLEV 1341
Query: 714 ACAEQGNTAA-IMLSA---G--FNPQTEPHL------RGMLTCIRAAQLWGLREKARIFV 761
+ T + LS G F TE L R +L + ++L +++K I V
Sbjct: 1342 ELNQNAQTLVDVNLSKELLGDFFQHITEYELFNDYYIRSILLKLYKSKLIKIQDKCWIEV 1401
Query: 762 PAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNP 821
R L+G D G L +I+V E K +VI G V + KNP
Sbjct: 1402 KESRNLLGVCDTSGTLPEDTVYIEVEEL----------DPIDNLMKPKVIIGRVAVLKNP 1451
Query: 822 CLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
C HPGD+R L+A+DHP L+ + L F G P+ + SGSDLDGD YFV +D+ LI
Sbjct: 1452 CHHPGDVRFLKAIDHPPLNGKRNVLFFSTNGMVPNFKQCSGSDLDGDRYFVIYDQTLI 1509
Score = 120 (47.3 bits), Expect = 3.0e-38, Sum P(3) = 3.0e-38
Identities = 49/210 (23%), Positives = 94/210 (44%)
Query: 910 EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAH 969
+ + K++ LGTI N H+ +D + ++ N I +A A VD KT +P
Sbjct: 1567 DIYLKNVDKSKLGTISNTHLAISDIEKVSSI--NSIKVAIQCAIEVDSVKTSVHGIIPRD 1624
Query: 970 ----LKPKLYPDFM-----------GKEAYQSYKSNKILGRLYRQSKDA-YDEDISVSSE 1013
LK K YP FM G + Y S++++G++Y +++ + D ++
Sbjct: 1625 VKSILKEKGYPHFMKIKNGSTFEYKGGNQRKYYISDRVIGKIYDSAENLLWFGDFLPEAK 1684
Query: 1014 VDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSM 1073
VD + + Y L ++ Y ++N +L ++ EE+L+ G +
Sbjct: 1685 VDESLLVQGYKEYLNHENFTTYM--------DYKSKINSILRRFGAQSEEDLLIGFM--D 1734
Query: 1074 PKYNSRKQGELKERLKHSYSALRKEFRQVF 1103
P+++ + E K K +Y++++K F F
Sbjct: 1735 PQFSEKLSIEAKAHFKSNYNSIQKLFYHNF 1764
Score = 94 (38.1 bits), Expect = 3.0e-38, Sum P(3) = 3.0e-38
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 399 ELYKG-PKQIDD-IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEG 456
ELYK P Q ++ V + + +TP++ PP + L NR+LRK+ ++F+ F DE
Sbjct: 1058 ELYKDKPIQSNNGWVLINEIFVTPSRIVLKPPRLTLGNRILRKFSP--EKFILFNFTDEN 1115
Query: 457 LQ 458
L+
Sbjct: 1116 LE 1117
Score = 67 (28.6 bits), Expect = 9.6e-33, Sum P(3) = 9.6e-33
Identities = 36/179 (20%), Positives = 75/179 (41%)
Query: 977 DFMGKEAYQSYKSNKILGRLYRQSKDA-YDEDISVSSEVDINPVDIHYDTDLEVPESVDF 1035
++ G + Y S++++G++Y +++ + D ++VD + + Y L +
Sbjct: 1647 EYKGGNQRKYYISDRVIGKIYDSAENLLWFGDFLPEAKVDESLLVQGYKEYLNHENFTTY 1706
Query: 1036 IADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSM--PKYNSRKQGELKERL----K 1089
+ Y ++N +L ++ EE+L+ G + K + + K K
Sbjct: 1707 M--------DYKSKINSILRRFGAQSEEDLLIGFMDPQFSEKLSIEAKAHFKSNYNSIQK 1758
Query: 1090 HSYSALRKEFRQVFEKMDSDCELLS----EDEKNAL------FERKASAWYQVTYH-PE 1137
Y EFR+ +++ LS E+E+ + E+K AWY ++Y PE
Sbjct: 1759 LFYHNFLNEFRKKSNNNNNNNNNLSMLQIEEEEELINENYTEIEKKVCAWYFISYSDPE 1817
>ASPGD|ASPL0000071805 [details] [associations]
symbol:rrpB species:162425 "Emericella nidulans"
[GO:0005724 "nuclear telomeric heterochromatin" evidence=IEA]
[GO:0005721 "centromeric heterochromatin" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0031380 "nuclear RNA-directed
RNA polymerase complex" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] [GO:0045141 "meiotic telomere
clustering" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0031048 "chromatin silencing by
small RNA" evidence=IEA] [GO:0031060 "regulation of histone
methylation" evidence=IEA] [GO:0071585 "detoxification of cadmium
ion" evidence=IEA] [GO:0034613 "cellular protein localization"
evidence=IEA] [GO:0071276 "cellular response to cadmium ion"
evidence=IEA] [GO:0030702 "chromatin silencing at centromere"
evidence=IEA] InterPro:IPR007855 Pfam:PF05183 EMBL:BN001303
GO:GO:0003968 PANTHER:PTHR23079 EnsemblFungi:CADANIAT00005632
Uniprot:C8VAM8
Length = 869
Score = 243 (90.6 bits), Expect = 8.6e-38, Sum P(3) = 8.6e-38
Identities = 58/151 (38%), Positives = 89/151 (58%)
Query: 557 CFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV--NPPPC 614
CFS+T A + V ++ DI+ NGY+FSDG+G+I+ LA V +LK+ PP
Sbjct: 318 CFSTTRA-ISGCTAHVK-KIDDIEGNGYIFSDGVGRISKFLAQIVKSELKIKTPTKEPPS 375
Query: 615 AYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIIT 674
AYQ R GCKG++ +P + + +R+S KF + LEI W++F LNRQ+I
Sbjct: 376 AYQFRLVGCKGMLIVFP-QARPQEVHIRKSQFKFAALSQGLEIIRWSQFTVASLNRQLIL 434
Query: 675 LLSTLNVPDEMFWSMQDSMLSKLNQMLVDSD 705
+LSTL + D++F +ML L++ + +SD
Sbjct: 435 VLSTLGITDKVFHLKLKTMLRNLDEAM-ESD 464
Score = 220 (82.5 bits), Expect = 8.6e-38, Sum P(3) = 8.6e-38
Identities = 38/75 (50%), Positives = 55/75 (73%)
Query: 806 KKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDL 865
+K ++I+G ++A+NP LHPG IR++ AV+ P LHHL D +V P+ GDR + SGSDL
Sbjct: 491 EKYEIIEGICILARNPSLHPGGIRVVRAVNAPGLHHLKDIVVLPRTGDRDIASMCSGSDL 550
Query: 866 DGDLYFVTWDENLIP 880
DGD + V WD++L+P
Sbjct: 551 DGDDFLVIWDQDLLP 565
Score = 86 (35.3 bits), Expect = 8.6e-38, Sum P(3) = 8.6e-38
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 431 ELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKR 490
++SN V+R+Y +LAD FLRV F D A + A + D T++ V R
Sbjct: 247 DISNCVIRRYANLADNFLRVRFTD-------AKHIGRIHATV--DNTMDE------VLTR 291
Query: 491 VRSILSGGFYLCGRKFSFLAFSSS 514
++ L+ G + ++ FLAF +S
Sbjct: 292 IKRALANGITIGSTRYEFLAFGNS 315
>TAIR|locus:2042808 [details] [associations]
symbol:AT2G05370 "AT2G05370" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002685 EMBL:AC007289 IPI:IPI00542066 PIR:F84467
RefSeq:NP_178605.1 UniGene:At.41191 PRIDE:Q9SHT7
EnsemblPlants:AT2G05370.1 GeneID:815085 KEGG:ath:AT2G05370
TAIR:At2g05370 ProtClustDB:CLSN2683119 ArrayExpress:Q9SHT7
Genevestigator:Q9SHT7 Uniprot:Q9SHT7
Length = 211
Score = 294 (108.6 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 68/138 (49%), Positives = 87/138 (63%)
Query: 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGG-VWRCRLKTSCTPSESYPDFYVTNTAEV 66
K LV +QV+ GF + K EL YLEN+VG VWRCRLKTS TP SYP+F + +T+ +
Sbjct: 2 KNLVVSQVTISGFGESTKTKELTDYLENKVGLLVWRCRLKTSWTPHGSYPNFEIIDTSNI 61
Query: 67 RKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGRT 126
K D YE+V PHAFVH + +DAA +++L L G+ LK SL ENP+ LN
Sbjct: 62 PKFDCYERVVPHAFVHCDAHKSL---MDAAEQSKLILGGQPLKFSLSSENPYTLN----- 113
Query: 127 STPFKLPDVCVEIGTLVS 144
P+KL V +EIGTL S
Sbjct: 114 --PYKLTGVSLEIGTLAS 129
Score = 249 (92.7 bits), Expect = 7.8e-20, P = 7.8e-20
Identities = 65/173 (37%), Positives = 89/173 (51%)
Query: 138 EIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKF-CFTRDIAFALKSSTEHAVIKCEFK 196
++G LV R +W S +F + KF C+ R + A H + +
Sbjct: 30 KVGLLVWRCRLKTSWTPHGSYPNFEIIDTSNIPKFDCYERVVPHAFVHCDAHKSLMDAAE 89
Query: 197 VEFLVR-----EINLVKQ--YS--EFSCVAILLQ---LASSPRVWYRTADDDILVLVPFD 244
L+ + +L + Y+ + + L+ LASSPRVWYRTADDDI D
Sbjct: 90 QSKLILGGQPLKFSLSSENPYTLNPYKLTGVSLEIGTLASSPRVWYRTADDDIYETSAVD 149
Query: 245 MLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVD 297
+LDD+DPWIRTTDFT SGAI RC YR+ IS R K +KV+ YL +RV +
Sbjct: 150 LLDDNDPWIRTTDFTQSGAIRRCLGYRVFISPRDHNKWTKVLDYLKTQRVNTE 202
>TAIR|locus:2052020 [details] [associations]
symbol:AT2G19930 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
[GO:0009410 "response to xenobiotic stimulus" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0010014 "meristem
initiation" evidence=RCA] [GO:0010075 "regulation of meristem
growth" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0048522 "positive regulation of cellular process"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 EMBL:AK229381
IPI:IPI00786210 PIR:H84582 RefSeq:NP_179583.3 UniGene:At.39772
EnsemblPlants:AT2G19930.1 GeneID:816512 KEGG:ath:AT2G19930
TAIR:At2g19930 HOGENOM:HOG000082682 OMA:LANYMAR
Genevestigator:O82188 Uniprot:O82188
Length = 977
Score = 158 (60.7 bits), Expect = 4.9e-11, Sum P(3) = 4.9e-11
Identities = 66/230 (28%), Positives = 100/230 (43%)
Query: 811 IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD----CLVFPQKGDRPHTNEASGSDLD 866
I G V++ +NP LH GDI IL+A L + FPQKG R +E +G D D
Sbjct: 625 ISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFD 684
Query: 867 GDLYFVTWDENLIPPSKKS--W----PPMEYNAAEAKTLTRPVD-QRDIIEFFAK---HM 916
GD+YF++ + L+ K S W PP + N+ A + P + + ++ E F H
Sbjct: 685 GDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHA 744
Query: 917 VN------ENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHL 970
N ++ TI + ++ D + +L EL D K +L
Sbjct: 745 SNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKML-ELIDIYYDALDAPKKGDK-VYL 802
Query: 971 KPKLYPDFMGK--EAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP 1018
KL PD E + ++S ILG ++ K E+ S SSE+ P
Sbjct: 803 PNKLKPDIFPHYMERDKKFQSTSILGLIFDFVKSQTTEEPSPSSEISKLP 852
Score = 97 (39.2 bits), Expect = 4.9e-11, Sum P(3) = 4.9e-11
Identities = 44/187 (23%), Positives = 80/187 (42%)
Query: 637 IRMSLRESMNKFQSHHTTLEICSWTRFQPGF--LNRQIITLLSTLNVPDEMFWSMQDSML 694
I++S S++ F + + LE+ + T P L++ ++ LLS +P+E F + + L
Sbjct: 473 IKVSKDPSLSNFSTFNA-LEVVT-TSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTL 530
Query: 695 SKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLR 754
+ + + A AA M+ G P EPHL+ L+ + + L+
Sbjct: 531 EESKSIFYNKRAALNAALNYGEMDDQNAAQMILVGI-PLDEPHLKNYLSILLKTEKNDLK 589
Query: 755 EKARIFVPAGRWLMGCLDELGVLEGGQ-CFIQVSEPFLGNC--FSKHGSRFAETKKLQVI 811
++ V +LMG +D G L+ + C I S G + G F + + ++
Sbjct: 590 A-GKLPVTESYYLMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFGD---IHIL 645
Query: 812 KGFVVIA 818
K V A
Sbjct: 646 KATYVKA 652
Score = 42 (19.8 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 31/126 (24%), Positives = 53/126 (42%)
Query: 384 CKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDL 443
C R + +QE +DP L + D V+ + K C P V++ +++ KD
Sbjct: 422 CLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLL-NKKLC-PRTVQVRPSMIKVSKDP 479
Query: 444 A-DRFLR------VTFMDEGLQT-MNANV---LSYFIAP--IVRDITLNSFSQKTRVFKR 490
+ F VT + +T ++ N+ LSY P DI LN+ + +F
Sbjct: 480 SLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYN 539
Query: 491 VRSILS 496
R+ L+
Sbjct: 540 KRAALN 545
Score = 40 (19.1 bits), Expect = 4.9e-11, Sum P(3) = 4.9e-11
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 578 DIKRNGYVFSDGIGKITPDLA 598
D + + SDG G I+ DLA
Sbjct: 390 DKNKKPCIHSDGTGYISEDLA 410
>TAIR|locus:2052030 [details] [associations]
symbol:AT2G19920 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 IPI:IPI00546115
PIR:G84582 RefSeq:NP_179582.2 UniGene:At.50085 PRIDE:O82189
EnsemblPlants:AT2G19920.1 GeneID:816511 KEGG:ath:AT2G19920
TAIR:At2g19920 eggNOG:NOG266676 InParanoid:O82189 OMA:MSIHEAR
PhylomeDB:O82189 Genevestigator:O82189 Uniprot:O82189
Length = 927
Score = 123 (48.4 bits), Expect = 2.3e-10, Sum P(4) = 2.3e-10
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 815 VVIAKNPCLHPGDIRILEAVDHPELHHLYDC----LVFPQKGDRPHTNEASGSDLDGDLY 870
V++ +NP LH GDI IL+A L + FPQKG R +E +G D DGD+Y
Sbjct: 629 VLVYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMY 688
Query: 871 FVTWDENLIPPSKKSWP 887
F++ + L+ K S P
Sbjct: 689 FISRNPKLLEHYKPSEP 705
Score = 94 (38.1 bits), Expect = 2.3e-10, Sum P(4) = 2.3e-10
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 936 EYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGR 995
E + + + L ++ A+D PKTG V +P +K L+P +M E +++KS ILG
Sbjct: 772 EKAEMKKKMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYM--ERNKTFKSTSILGL 829
Query: 996 LYRQSKDAYD-EDISVS 1011
++ + D ++ ED + S
Sbjct: 830 IF-DTVDFHNAEDTTPS 845
Score = 75 (31.5 bits), Expect = 2.3e-10, Sum P(4) = 2.3e-10
Identities = 50/189 (26%), Positives = 85/189 (44%)
Query: 609 VNPPPCAYQIRY----AGCKGVVAC---WPAKGDGIRMSL-RESMNKFQSHHTT---LEI 657
V PP QIR + KG+ P + +R S+ + +K S+ +T LE+
Sbjct: 437 VQEPPLLIQIRMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEV 496
Query: 658 CSWTRFQP--GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTA-- 713
+ T P L++ ++ LLS VP++ F D +L+ L + + F+V A
Sbjct: 497 VT-TSNPPKRAKLSKNLVALLSYGGVPNDFFL---DILLNTLEKK---KTIFFKVRAAGK 549
Query: 714 ACAEQGN----TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMG 769
A GN A M+ AG P EP+L+ L+ + + L+ ++ + +LMG
Sbjct: 550 AALHYGNMDDKNALQMIMAGI-PLDEPYLKHYLSKLLKLEKDDLKA-GKLPIDESYYLMG 607
Query: 770 CLDELGVLE 778
+D G L+
Sbjct: 608 TVDPTGELK 616
Score = 44 (20.5 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 464 VLSYFIAP--IVRDITLNSFSQKTRVFKRVRS 493
+LSY P DI LN+ +K +F +VR+
Sbjct: 515 LLSYGGVPNDFFLDILLNTLEKKKTIFFKVRA 546
Score = 41 (19.5 bits), Expect = 2.3e-10, Sum P(4) = 2.3e-10
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 579 IKRNGY--VFSDGIGKITPDLA 598
+ +NG + SDG G I+ DLA
Sbjct: 393 LDKNGKPRIHSDGTGYISEDLA 414
Score = 38 (18.4 bits), Expect = 9.7e-07, Sum P(4) = 9.7e-07
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 753 LREKARIFVP---AGRWLM--GCLDELGVLEGGQCFIQVSEPFLGNCFSK 797
L +K IF AG+ + G +D+ L+ I + EP+L + SK
Sbjct: 534 LEKKKTIFFKVRAAGKAALHYGNMDDKNALQMIMAGIPLDEPYLKHYLSK 583
>TAIR|locus:2052040 [details] [associations]
symbol:AT2G19910 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 IPI:IPI00534018
PIR:F84582 RefSeq:NP_179581.2 UniGene:At.52837 PaxDb:O82190
PRIDE:O82190 EnsemblPlants:AT2G19910.1 GeneID:816510
KEGG:ath:AT2G19910 TAIR:At2g19910 eggNOG:NOG279775
InParanoid:O82190 OMA:IFYSERA PhylomeDB:O82190
Genevestigator:O82190 Uniprot:O82190
Length = 992
Score = 130 (50.8 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 811 IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD----CLVFPQKGDRPHTNEASGSDLD 866
I G V++ +NP LH GDI +L+A L + FPQKG R +E +G D D
Sbjct: 636 ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFD 695
Query: 867 GDLYFVTWDENLIPPSKKSWP 887
GD+YF++ + L+ K S P
Sbjct: 696 GDMYFISRNPKLLEHFKPSEP 716
Score = 108 (43.1 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 32/124 (25%), Positives = 66/124 (53%)
Query: 942 ENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSK 1001
+N + L ++ A+D PK G V +P L+ K +P +M ++ + ++S ILG ++ +
Sbjct: 789 KNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIF-DTV 847
Query: 1002 DAYDEDISVSSEVDINPVDIHYDTDLEVPES-VDFIADAWNQKCSYDGQLN-GLLEQYKV 1059
D+++ + SE+ + Y D VP+S +D +W + +Y +++ ++E KV
Sbjct: 848 DSHNAEEPPPSEIS----KLWYFEDEPVPKSHMDKFT-SWYE--NYRSEMSQAMMETDKV 900
Query: 1060 NREE 1063
R +
Sbjct: 901 KRNQ 904
Score = 84 (34.6 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 38/154 (24%), Positives = 69/154 (44%)
Query: 668 LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLS 727
L+R ++ LLS VP++ F ++ + L + + AF+ +Q TA ++L
Sbjct: 517 LSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQ-YTADMIL- 574
Query: 728 AGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQ-CFIQV 786
G P EP+L+ L+ + + L+ R + ++MG +D G L+ + C I
Sbjct: 575 VGI-PLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKENEICVILH 632
Query: 787 SEPFLGNC--FSKHGSRFAETKKLQVIKGFVVIA 818
S G+ + G F + + V+K V A
Sbjct: 633 SGQISGDVLVYRNPGLHFGD---IHVLKATYVKA 663
Score = 41 (19.5 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 579 IKRNGY--VFSDGIGKITPDLA 598
+ +NG + SDG G I+ DLA
Sbjct: 393 LDKNGKPCIHSDGTGYISEDLA 414
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1197 1197 0.00097 123 3 11 22 0.37 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 638 (68 KB)
Total size of DFA: 584 KB (2261 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 99.76u 0.17s 99.93t Elapsed: 00:00:04
Total cpu time: 99.77u 0.17s 99.94t Elapsed: 00:00:04
Start: Fri May 10 12:24:18 2013 End: Fri May 10 12:24:22 2013