BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041430
         (1197 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255548928|ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
 gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
          Length = 1203

 Score = 1922 bits (4978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 926/1204 (76%), Positives = 1045/1204 (86%), Gaps = 8/1204 (0%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            ME + REK  V  QVSFGGFD++V A +LV YL+NE+G VWRCRLKTS TP ESYP+F +
Sbjct: 1    METKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEI 60

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
            T+TA +++ D Y +VEPHAFVHFA P   T A +AAG  ELF NGR +KVSLGPENPF L
Sbjct: 61   TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHL 120

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            NQR RT+ PFKL DV VEIGTLVSRDEF V WRGP SG DFLVDPFDG CKFCFTRD AF
Sbjct: 121  NQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAF 180

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
            + K +TEHAVI+C+FK+EFLVR+IN +KQY++ SC+ ILLQLAS+P VWYRTADDDI VL
Sbjct: 181  SFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVL 240

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS 300
            VPFD+LDDDDPWIRTTDFTPSGAIGRCNSYR+SI  RH  KL + + +L ERRVQ D L 
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLR 300

Query: 301  RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG 360
            RP+ +  EP++E+PMSDPFFCIH+EEG+ F +MFLVNAVMHKGI NQHQLSDSFFDLLR 
Sbjct: 301  RPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRN 360

Query: 361  QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP 420
            Q  +VN+AAL+HI SYK PVFDA KRLK VQ+WLLK+P+L++  KQ+DDIVE+RRL ITP
Sbjct: 361  QPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITP 420

Query: 421  TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
            T+AYCLPPEVELSNRVLR+YKD+AD+FLRVTFMDEGLQTMNAN L+Y+ APIVRDIT NS
Sbjct: 421  TRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNS 480

Query: 481  FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540
            FSQKTR+FKRV+SIL+ GFYLCGRK+SFLAFSS+QLRD SAWFF+EDGKTSV  I+ WMG
Sbjct: 481  FSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMG 540

Query: 541  RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAME 600
            +FT++NIAKCAARMGQCFSSTYATVEVP  E   +LPDI+RN Y+FSDGIG ITPDLA E
Sbjct: 541  KFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKE 600

Query: 601  VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSW 660
            VA+KLKL+VN PPCAYQIRYAGCKGVVACWPA  DGIR+SLR SMNKF S+HTTLEICSW
Sbjct: 601  VAEKLKLEVN-PPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSW 659

Query: 661  TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGN 720
            TRFQPGFLNRQIITLLSTL+VPDE+FW MQ  M+SKLNQM +D+DVAF+V+TA+CAEQGN
Sbjct: 660  TRFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGN 719

Query: 721  TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
            TAAIMLSAGFNP+TEPHL GMLTCIRAAQLWGLREK RIFVP+GRWLMGCLDELGVLE G
Sbjct: 720  TAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHG 779

Query: 781  QCFIQVSEPFLGNCFSKHGSRFAET-KKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
            QCFIQVS P L +CF KHGSRF+E+ KKLQV+KG VV+AKNPCLHPGDIRILEAVD PEL
Sbjct: 780  QCFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPEL 839

Query: 840  HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL 899
            HHL+DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSK+SW PM+Y+AAEAK L
Sbjct: 840  HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQL 899

Query: 900  TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
             RPV+ +DII+FFAK+MVNENLG ICNAHVVHAD SEYGALDENCI LAELAATAVDFPK
Sbjct: 900  NRPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPK 959

Query: 960  TGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDI------SVSSE 1013
            TGK+VTMP HLKPKLYPDFMGKE YQSY SNKILGRLYRQ KD Y++D       + SSE
Sbjct: 960  TGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSE 1019

Query: 1014 VDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSM 1073
            +++   DI YD DLEV  S D+I DAW+QKCSYDGQL GLL QYKV REEE+VTGHIWSM
Sbjct: 1020 LNLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSM 1079

Query: 1074 PKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVT 1133
            PK NSRKQGELKERLK SY +L+KEFRQVFEKMDSD E L+EDEKN L+E+KASAWYQV 
Sbjct: 1080 PKCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVA 1139

Query: 1134 YHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYV 1193
            YHP+WV KS++LQE D+A    +LSFAWIA DYLARIKIRCR    +DTSKPVN L +Y+
Sbjct: 1140 YHPKWVNKSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKYL 1199

Query: 1194 ADRI 1197
            ADRI
Sbjct: 1200 ADRI 1203


>gi|224141893|ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
 gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase [Populus trichocarpa]
          Length = 1200

 Score = 1912 bits (4953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 905/1201 (75%), Positives = 1050/1201 (87%), Gaps = 5/1201 (0%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            ME EG  K  V  QVS GGFD +V A +L++YL+  +G VWRCRLKTS TP ESYP+F +
Sbjct: 1    MEAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
            T+  ++ +T+DY +V PHAFVHFA+P   T A++A+GR ELFLN +ALKVSLGP+NPF L
Sbjct: 61   TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTL 120

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            NQR RT+TPFKL DV  EIG LVSRDEFFV WRGP SG DFLVDPFDGTCKFCF+R+ AF
Sbjct: 121  NQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAF 180

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
            +LKS++EHAVIKC+FKVEFLVR+IN + QY+E SC+ +LLQLAS+P VWYRTADDDI   
Sbjct: 181  SLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAW 240

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQV---D 297
            VPFD+LDDDDPWIRTTDFT SGAIGRC+SYR+SI  RH  KL K + YL ERRVQV   +
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEE 300

Query: 298  SLSRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDL 357
            +  R I I +EPDF +PMSDPFFCIH++EGI+FE++FLVNAVMHKGI NQHQLS+ FFDL
Sbjct: 301  NHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDL 360

Query: 358  LRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLV 417
            LR Q  EVNV+ALKHI +Y+ PVF+A +RLK VQEWLLK+P L+K PKQ+ D+VE+RRLV
Sbjct: 361  LRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLV 420

Query: 418  ITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDIT 477
            ITPTKAYCLPPEVELSNRVLRKYKD+ADRFLRVTFMDEGLQ MN+NVL+Y++APIVRDIT
Sbjct: 421  ITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDIT 480

Query: 478  LNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKK 537
             NSF QKTR+FKRVRSIL+ GFYLCGR++SFLAFS++QLRD SAWFFSE+   SVLD+K 
Sbjct: 481  SNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKS 540

Query: 538  WMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDL 597
            WMG+FT++NIAKCAARMGQCFSSTYAT+EVPP EV+ +LPDI+RNGYVFSDGIG ITPDL
Sbjct: 541  WMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDL 600

Query: 598  AMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEI 657
            A EVA+KLKLD++PP CAYQIRYAGCKGVVACWP KGDG+R+SLR SMNKFQS+HTTLEI
Sbjct: 601  AREVAEKLKLDIDPP-CAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEI 659

Query: 658  CSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAE 717
            CSWTRFQPGFLNRQIITLLSTLNVPD +FW MQ++M+SKLNQM V+SDVAF+VLTA+CA+
Sbjct: 660  CSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCAD 719

Query: 718  QGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVL 777
            QGN AAIMLSAGF P  EPHLRGMLTC+RAAQLW LREK RIFVP+GRWLMGCLDELG+L
Sbjct: 720  QGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGML 779

Query: 778  EGGQCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDH 836
            E GQCFIQVS   L  CF KHG++F+E +K LQVIKG VVIAKNPCLHPGD+R+LEAVD 
Sbjct: 780  EQGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDV 839

Query: 837  PELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEA 896
            P LHHLYDCLVFPQKG+RPHTNEASGSDLDGDLYFVTWDENLIPPSK+SW PM+Y+AAEA
Sbjct: 840  PGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEA 899

Query: 897  KTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVD 956
            K L RPV+ +DIIEFFAK+MVN+NLG ICNAHVVHAD SEYGA D+NC+ LAELAATAVD
Sbjct: 900  KLLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVD 959

Query: 957  FPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDI 1016
            FPKTGK+V+MP +LKPK+YPDFMGKE YQSYKS KILGRLYRQ KDAYDED++ SSE+++
Sbjct: 960  FPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNL 1019

Query: 1017 NPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKY 1076
             P DI YD+DLEV  + D+I+DAW+QKCSYDGQLNGLL QYKV REEE+VTGHIWSMPKY
Sbjct: 1020 VPGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKY 1079

Query: 1077 NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHP 1136
            +SRKQGELK+RLKHSY++L+KEFRQ+FEKMD + E L + EKN L+E+KASAWYQV YHP
Sbjct: 1080 SSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHP 1139

Query: 1137 EWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADR 1196
             WVKKSL+LQ+ D A + V+LSFAWIA DYLARIKIR RE  N+D++KPVN LA+Y+ADR
Sbjct: 1140 HWVKKSLELQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADR 1199

Query: 1197 I 1197
            +
Sbjct: 1200 M 1200


>gi|224089239|ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
 gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase [Populus trichocarpa]
          Length = 1198

 Score = 1891 bits (4899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 906/1199 (75%), Positives = 1036/1199 (86%), Gaps = 3/1199 (0%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            ME EG  K  V  QVS GGFD +V A +L++YLE E+G VWRCRLKTS TP ESYP+F +
Sbjct: 1    METEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
            T+  ++ +T+DY +VEPHAFVHFA+P   T A+DAA R ELFLN + LK SLGPENPF L
Sbjct: 61   TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTL 120

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            NQR R +TPFKL  V VEIGTLVSRDEFFV WRGP +G DFLVDPFDGTC+FCF+R+ AF
Sbjct: 121  NQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
            + KS+ EHAVIKC+FKVEFLVR+IN +KQY+E SC+ +LLQLAS+PRVWYRTADDDI V 
Sbjct: 181  SFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVS 240

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS 300
            VPFD+LDDDDPWIRTTDFT SGAIGRC+SYR+SI  RH  KL K + +L ERRVQ + L 
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLR 300

Query: 301  RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG 360
            RPI IR+EPDF +PM+DPFFCIH++EGI+F+++FLVNAVMHKGI NQHQLS+ FFDLLR 
Sbjct: 301  RPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 360

Query: 361  QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP 420
            Q  EVNVAALKHIY Y+ PVFDA K+LK+ QEWLLK+P+ +K  K++DDI E+RRLVITP
Sbjct: 361  QPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITP 420

Query: 421  TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
            TKAYCLPPEVELSNRVLRKYKD+ADRFLRVTFMDEGLQTMN+N L+YF APIVR IT  S
Sbjct: 421  TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYS 480

Query: 481  FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540
            F QKTR+FKRVRSIL+ GFYLCGR++SFLAFSS+QLRD SAWFF+ED   +V+ IK WMG
Sbjct: 481  FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMG 540

Query: 541  RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAME 600
            +FT+KNIAKCAARMGQCFSSTYAT+EVPP EV+ +LPDIKRNGY FSDGIG ITPDLA E
Sbjct: 541  KFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLARE 600

Query: 601  VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSW 660
            VA+KLK D + PPCAYQIRYAGCKGVVACWP +GDGIR+SLR SMNKFQS+HT LEICSW
Sbjct: 601  VAEKLKFDFD-PPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSW 659

Query: 661  TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGN 720
            TRFQPGFLNRQIITLLS LNVPD +FW MQ+ M+SKLNQMLVDSDVAF+VLTA+CAEQGN
Sbjct: 660  TRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGN 719

Query: 721  TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
             AAIMLSAGF PQ EPHLRGMLTC+RAAQLWGLREKARIFVP+GRWLMGCLDELGVLE G
Sbjct: 720  VAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQG 779

Query: 781  QCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
            QCFIQVS  +L NCF KHGS+F+ETKK LQV+KG VVIAKNPCLHPGDIRILEAVD P L
Sbjct: 780  QCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGL 839

Query: 840  HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL 899
            HHLYDCLVFPQKG+RPH NEASGSDLDGDLYFVTWDENLIPPSK+SW PM+Y+AAEAK L
Sbjct: 840  HHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQL 899

Query: 900  TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
            TRPV+ +DI+EFFAK+M NENLG ICNAHVV AD SEYGALDE C+ LAELAATAVDFPK
Sbjct: 900  TRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPK 959

Query: 960  TGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSK-DAYDEDISVSSEVDINP 1018
            TGKIV+MP+ LKPK+YPDFMGKE +QSYKS KILGRLYRQ K    D+D++ SSE++   
Sbjct: 960  TGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVR 1019

Query: 1019 VDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNS 1078
             DI YD DLEV  + DFI+DAW++KCSYDGQLNGLL QYKV REEE+VTGH+WSMPK +S
Sbjct: 1020 GDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSS 1079

Query: 1079 RKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEW 1138
            RKQG+LKERLKHSY+ L++EFRQVFEKMD D   L +DEKN L+ERKASAWYQVTYHP W
Sbjct: 1080 RKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHW 1139

Query: 1139 VKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
            ++KSL+LQ+ D A   V+LSFAWIA DYLARIKIR   + N+D++KPVN LA+Y+ADR+
Sbjct: 1140 IQKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198


>gi|295885030|gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
 gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
          Length = 1196

 Score = 1841 bits (4769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 889/1198 (74%), Positives = 1011/1198 (84%), Gaps = 3/1198 (0%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            ME EG  K  V  QVS GGFDR+VKA +L+KYLENEVG VWRCRLKTS TP ESYP+F +
Sbjct: 1    MELEGSVKETVVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEI 60

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
            T+T  +++ D+Y+KVEPHAFVHFA P  VT AVDAAGRTEL  N + LKVSLGPENP+ L
Sbjct: 61   TDTTVIQRKDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYL 120

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            N+R R +TPFKLPDV +EIGTL S DEF V WRGP SG +FLVDPFD TCKFCF+RD AF
Sbjct: 121  NRRRRDTTPFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAF 180

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
            + K + EHAVIKC+FKVEFLVREIN VKQYSE +   +LLQLASSP VWYRTADDD    
Sbjct: 181  SFKGTNEHAVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKT 240

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS 300
            VPF +LDDDD WIRTTDFT SGAIGRCN+YR+ +  RH  KL K + YL ERRV V+ L 
Sbjct: 241  VPFGLLDDDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLR 300

Query: 301  RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG 360
              + IR+EPDF   MSD F+ I Y+EGI FEIMFLVNAV+HKGI NQHQLS  FF LLR 
Sbjct: 301  SQLRIRDEPDFGRSMSDHFYYI-YKEGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRN 359

Query: 361  QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP 420
            QS EVNVAALKHIYSY+ PV+DA +RLK V +WLLK+P+L+K P Q+DDIVE+RRLVITP
Sbjct: 360  QSMEVNVAALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVITP 419

Query: 421  TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
            TKAYCL PEVELSNRVLRKYKD+ADRFLRVTFMDEG+Q MNANVL+Y+ A IVRD+T  S
Sbjct: 420  TKAYCLLPEVELSNRVLRKYKDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTSTS 479

Query: 481  FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540
            FSQKT VFKRV+SIL+ GFYLCGRK+SFLAFS++QLRD +AWFF+EDGK +VL I  WMG
Sbjct: 480  FSQKTGVFKRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGKINVLQIIGWMG 539

Query: 541  RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAME 600
            +FT++NIAKCAARMGQCFSSTYATVEVP  +V+  LPDIKRNGY FSDGIGKITPDLAME
Sbjct: 540  KFTNRNIAKCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFSDGIGKITPDLAME 599

Query: 601  VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSW 660
            VAQKLKLD+NPP CAYQIRYAGCKGVVACWP +GD IR+SLR SM KF SHHTTLEICSW
Sbjct: 600  VAQKLKLDLNPP-CAYQIRYAGCKGVVACWPEEGDRIRLSLRSSMIKFFSHHTTLEICSW 658

Query: 661  TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGN 720
            TRFQPGFLNRQIITLLSTL VPDE+FW MQ+SM+SKL+++LVD+D AFEV+ ++C EQG+
Sbjct: 659  TRFQPGFLNRQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVVISSCGEQGH 718

Query: 721  TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
            T AIMLSAGF PQTEPHLRGMLTC+RA+QLWGLREK+RIF+ +GRWLMG LDELGVLE G
Sbjct: 719  TPAIMLSAGFKPQTEPHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELGVLEQG 778

Query: 781  QCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
            QCFIQVS P L NCF KHGSRFAETKK  +VIKG VVIAKNPCLHPGDIRILEAVD P L
Sbjct: 779  QCFIQVSNPSLQNCFLKHGSRFAETKKNFEVIKGLVVIAKNPCLHPGDIRILEAVDAPGL 838

Query: 840  HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL 899
            HHLYDCLVFPQKG+RPHTNEASGSDLDGDLYFVTW+E LIPPSKKS  PM+Y+    + L
Sbjct: 839  HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWEEALIPPSKKSSQPMQYDLDAPREL 898

Query: 900  TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
             R V  +DIIEFF+K+MVNE+LG+ICNAHVVH+D SE+GA DE CI LAELAA AVDFPK
Sbjct: 899  NRSVTHKDIIEFFSKNMVNEHLGSICNAHVVHSDLSEHGASDEKCIHLAELAAIAVDFPK 958

Query: 960  TGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPV 1019
            TGKIV+MPA LKPKLYPDFMGKE +QSYKSNKILGRLYR  KDAYD+D+S SSE++    
Sbjct: 959  TGKIVSMPAQLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDKDVSESSELNFGAS 1018

Query: 1020 DIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSR 1079
            DI+YD DLE+  S D+I DAW +KCSYDGQL GLL+QYKV REEE+VTG IWSMPKY S+
Sbjct: 1019 DINYDADLEITGSADYITDAWAKKCSYDGQLIGLLKQYKVKREEEVVTGQIWSMPKYASK 1078

Query: 1080 KQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWV 1139
            K G+LKE+L HSY +LRKEFRQ+FE MDS+ E L+EDEKN L+ERKASAWYQVTYHPEWV
Sbjct: 1079 KLGDLKEKLGHSYGSLRKEFRQLFENMDSEFEQLNEDEKNKLYERKASAWYQVTYHPEWV 1138

Query: 1140 KKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
            +K L+ Q+ D    VV+LSFAWIA DYLARIK+R +   N+D +KPVN L RY+ADRI
Sbjct: 1139 QKKLEFQKPDGDEGVVMLSFAWIAADYLARIKVRHQGTENLDFAKPVNSLVRYLADRI 1196


>gi|225430281|ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1816 bits (4704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 881/1200 (73%), Positives = 1012/1200 (84%), Gaps = 6/1200 (0%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            ME EG EK +V  Q+S GGFD+ V A EL  YLE+ +G V RCRLKTS TP ESYPDF +
Sbjct: 1    MESEGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEI 60

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
             +TA++ +T+DY+KVEPHAFVHF  P   T A+DAAG++ELFL+G+ LKVSLGPE PF L
Sbjct: 61   IDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHL 120

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            NQR RT+ PFK PDV +EIG LVSRDE+F  WRGP+SG DFLVDPFDGTCKF FT+D AF
Sbjct: 121  NQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAF 180

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
            + K   +HAVIKC FKVEFLVREIN V+Q  + S + +LLQL+SSP V+YRTADDDI   
Sbjct: 181  SFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEET 240

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQV--DS 298
            VPFD+LDDDDPWIRTTDFT SGAIGRCNSYRISI  R+  KL K + YL  RRV V  DS
Sbjct: 241  VPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDS 300

Query: 299  LSRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLL 358
                + +R+EPDF +PMSDPFFCI ++EGI F +MFLVNAVMHKGIINQHQLSD FFDLL
Sbjct: 301  PKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLL 360

Query: 359  RGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVI 418
            R Q +++N+AALKHI SY+ PVFDA +RLKLV +WLLK+P+L K PK++DDIVEVRRLVI
Sbjct: 361  RSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVI 420

Query: 419  TPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITL 478
            TP+KAYCLPPEVELSNRVLR YK+++DRFLRVTFMDEG+QT+NANVL+Y++APIV+ IT 
Sbjct: 421  TPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITS 480

Query: 479  NSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKW 538
            NSF QKTRVFKRV++IL+ GFYLCGRK+SFLAFSS+QLRD SAWFF+ED KTSV  IK W
Sbjct: 481  NSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSW 540

Query: 539  MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLA 598
            MG+FT++N+AKCAARMGQCFSSTYATVEVP  EV  ELPDIKRNGY FSDGIGKI PDLA
Sbjct: 541  MGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLA 599

Query: 599  MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEIC 658
            MEVA+KLKL+  P   AYQIRYAGCKGVVACWP+  DGIR+S R SMNKF S HT LEIC
Sbjct: 600  MEVAEKLKLEGTP--SAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEIC 657

Query: 659  SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ 718
            SWTRFQPGFLNRQI+TLLS LNVPD++FW MQ+SM+SKLNQML D+DVAF+VL A+CAEQ
Sbjct: 658  SWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQ 717

Query: 719  GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE 778
            GNTAAIMLSAGF PQTEPHL+GMLTCIRAAQ WGLREKARIFVP+GRWLMGCLDELGVLE
Sbjct: 718  GNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLE 777

Query: 779  GGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE 838
             GQCFIQVS P L NCF KHGSRF+  K L+VIKG V IAKNPCLHPGD+RILEAVD P 
Sbjct: 778  QGQCFIQVSSPSLENCFLKHGSRFSAQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPG 837

Query: 839  LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKT 898
            L HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTW+E LIPPSK+SWPPM+Y++AEAK 
Sbjct: 838  LEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKA 897

Query: 899  LTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFP 958
            L R V   DII+FF K+MVNENLG ICNAHVVHAD SEYGALDE C+ LAE AATAVDFP
Sbjct: 898  LAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFP 957

Query: 959  KTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP 1018
            KTGK+VT+P +LKPK+YPDFMGKE +Q+Y+SNKILG++YRQ KDAY+ED+S SSE     
Sbjct: 958  KTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGA 1017

Query: 1019 VDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNS 1078
              + +D DL +P S DFI DAW  KCSYDGQLNGLL QYKV REEE+VTGH+WSMPKY S
Sbjct: 1018 DKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKS 1077

Query: 1079 RKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEW 1138
            RKQGEL ERLKH+YS+L+KEFRQ+FEKM+SD + L++DEKN L+E+KASAWYQVTYHP W
Sbjct: 1078 RKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTW 1137

Query: 1139 VKKSLDLQEQDSA-RSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
            VKKSL+LQ  D      V+LSFAWI  DYLARIKIR +   N+D+SKP+N LAR++ DRI
Sbjct: 1138 VKKSLELQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1197


>gi|356507732|ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
          Length = 1204

 Score = 1774 bits (4594), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 859/1208 (71%), Positives = 1006/1208 (83%), Gaps = 15/1208 (1%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            M+ EG EK  V  Q+S GGF   VKA++L+ YLE+++G V+RCRLKTS TP ESYP+F +
Sbjct: 1    MDLEGSEKGSVVTQISIGGFGSEVKASDLLNYLEDKIGLVYRCRLKTSWTPPESYPEFKI 60

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
             +TA++R+T+DY+KVEPHAFVHFA P  VT A++A+G  +LFL  + LKVS GP+NP+ L
Sbjct: 61   IDTAKIRRTEDYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPKNPYFL 120

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            NQR RT+TPFK+ DV VEIGTLVS  EFFV+WRGP  G  FLVDPFDG C+FCF+RD AF
Sbjct: 121  NQRRRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAF 180

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
            + K   + AVIKC+F+V FLVR+IN +++Y++ S + +LL LASSP VWYRTADDDI   
Sbjct: 181  SFKGIDKKAVIKCDFQVGFLVRDINEIRRYNDTSYLVVLLHLASSPWVWYRTADDDIEES 240

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS 300
            VPFD+LDDDDPWIRTTDFTPSGAIGRCN YRISI  RH  KL K + YL  +RVQ+  L 
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQIQELP 300

Query: 301  RPITIR--EEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLL 358
               T+R   EPDF +PMSD FF +H+++ I+F+IMFLVNA++HKGI NQH+LSD FF+LL
Sbjct: 301  LKQTLRTQNEPDFGMPMSDAFFYVHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELL 360

Query: 359  RGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVI 418
            R Q +E+NVAALKH+ SYK PVFDA KRLK+VQEWLL++P+LY+  KQ+DDIVEVRRLV+
Sbjct: 361  RNQPKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVV 420

Query: 419  TPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITL 478
            TP+KAYC+PPEVELSNRVLRK+++++D FLRVTFMDEG+QT+N N L+Y++APIV++IT 
Sbjct: 421  TPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITS 480

Query: 479  NSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKW 538
            NSFSQKT+++KRV++IL  GFY CGRK+SFLAFSS+QLRD SAWFF+ED K    DI+ W
Sbjct: 481  NSFSQKTKIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAED-KIRCDDIRNW 539

Query: 539  MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLA 598
            MG+F  +N+AKCAARMGQCFSSTYATVEV   EV+  LPD++RN Y+FSDGIG IT DLA
Sbjct: 540  MGKFNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSDGIGVITHDLA 599

Query: 599  MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEIC 658
             EVA+KLKLD    P AYQIRYAG KGVVA WPAKGDG+R+SLR SMNKFQS H  LEIC
Sbjct: 600  REVAEKLKLD--NVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEIC 657

Query: 659  SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ 718
            +WTRFQPGFLNRQIITLLS L VPDE+FW MQ++ML KLNQMLVD+D+AF+VLT +CAE 
Sbjct: 658  AWTRFQPGFLNRQIITLLSALGVPDEIFWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEH 717

Query: 719  GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE 778
            GN AAIMLS GF+P TEPHLRGMLT  RAAQLWGLREK+RIFV +GRWLMG LDELGVLE
Sbjct: 718  GNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLE 777

Query: 779  GGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE 838
             GQCF+QVS P L NCFSKHGSRF+ETK L V+KGFVVIAKNPCLHPGD+R+LEAVD P+
Sbjct: 778  QGQCFVQVSTPSLENCFSKHGSRFSETKNLHVVKGFVVIAKNPCLHPGDVRVLEAVDAPD 837

Query: 839  LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKT 898
            LHHL DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSK+SW PMEY   E+K 
Sbjct: 838  LHHLNDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKL 897

Query: 899  LTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFP 958
            LTR V  RDIIEFF ++MVNE+LG ICNAHVVHAD S+YGALDE CI LAELAATAVDFP
Sbjct: 898  LTRQVMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFP 957

Query: 959  KTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP 1018
            KTGK+VTMP HLKPKLYPDFMGKE +QSY+SNKILGRLYR  KDAYDEDI  +  ++   
Sbjct: 958  KTGKLVTMPPHLKPKLYPDFMGKERHQSYRSNKILGRLYRHIKDAYDEDIE-APYLNFVT 1016

Query: 1019 VDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNS 1078
             DI YD DLEVP S DFIADAW QKCSYDGQL+GL+ QYKV REEE+VTG IWSMPKYNS
Sbjct: 1017 GDIPYDKDLEVPGSADFIADAWEQKCSYDGQLSGLIGQYKVKREEEVVTGQIWSMPKYNS 1076

Query: 1079 RKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEW 1138
            RKQGELKERLKHSYSAL+KEFR  FEK++SD   LSE+EKN L+E+KASAWYQVTYHPEW
Sbjct: 1077 RKQGELKERLKHSYSALKKEFRYTFEKLNSDVGELSEEEKNLLYEQKASAWYQVTYHPEW 1136

Query: 1139 VKKSLDL-------QEQDSARSVVLLSFAWIANDYLARIKIRCREM--ANIDTSKPVNYL 1189
            VKKSLDL       QE DS  S V+LSF WIA DYLAR KIR R     N D++KPV+YL
Sbjct: 1137 VKKSLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLARTKIRQRHQRSGNFDSTKPVDYL 1196

Query: 1190 ARYVADRI 1197
            A+Y+++R+
Sbjct: 1197 AKYLSERL 1204


>gi|356515444|ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
          Length = 1204

 Score = 1766 bits (4573), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 858/1208 (71%), Positives = 1002/1208 (82%), Gaps = 15/1208 (1%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            M+ EG EK  V  Q+S GGF   VKA++LV YLE+++G V+RCRLKTS TP ESYP+F +
Sbjct: 1    MDLEGSEKDSVVTQISIGGFGSEVKASDLVNYLEDKIGLVYRCRLKTSWTPPESYPEFNI 60

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
             +TA +R+TD+Y+KVEPHAFVHFA P  VT A++A+G  +LFL  + LKVS GPENP+ L
Sbjct: 61   IDTANIRRTDNYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPENPYFL 120

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            NQR RT+TPFK+ DV VEIGTLVS  EFFV+WRGP  G  FLVDPFDG C+FCF+RD AF
Sbjct: 121  NQRRRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAF 180

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
            + K   + AVIKC+F+V FLVR+IN +K+Y++ S + +LL LASSP VWYRTADDDI   
Sbjct: 181  SFKGIEKKAVIKCDFQVGFLVRDINEIKRYNDTSYLVVLLHLASSPWVWYRTADDDIEES 240

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS 300
            VPFD+LDDDDPWIRTTDFTPSGAIGRCN YRISI  RH  KL K + YL  +RVQ+  L+
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQMQELA 300

Query: 301  RPITIR--EEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLL 358
               T+R   EPDF VPMSD FF IH+++ I+F+IMFLVNA++HKGI NQH+LSD FF+LL
Sbjct: 301  LKQTLRTLNEPDFGVPMSDAFFYIHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELL 360

Query: 359  RGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVI 418
            + Q +E+NVAALKH+ SYK PVFDA KRLK+VQEWLL++P+LY+  KQ+DDIVEVRRLVI
Sbjct: 361  KNQPKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVI 420

Query: 419  TPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITL 478
            TP+KAYC+PPEVELSNRVLRK+++++D FLRVTFMDEG+QT+N N L+Y++APIV++IT 
Sbjct: 421  TPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITS 480

Query: 479  NSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKW 538
            NSFSQ+T+++KRV++IL  GFY CGRK+SFLAFSS+QLRD SAWFF+ED K    DI+ W
Sbjct: 481  NSFSQRTKIYKRVKTILEQGFYFCGRKYSFLAFSSNQLRDRSAWFFAED-KIRCDDIRNW 539

Query: 539  MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLA 598
            MG+F  +N+AKCAARMGQCFSSTYATVEV   EV+  LPD++RN Y+FSDGIG IT DLA
Sbjct: 540  MGKFNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSDGIGVITHDLA 599

Query: 599  MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEIC 658
             EVA+KLKLD    P AYQIRYAG KGVVA WPAKGDG+R+SLR SMNKFQS H  LEIC
Sbjct: 600  REVAEKLKLD--NVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEIC 657

Query: 659  SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ 718
            +WTRFQPGFLNRQIITLLS L VPDE+FW MQ++ML KLNQMLVD+D+AF+VLT +CAE 
Sbjct: 658  AWTRFQPGFLNRQIITLLSALGVPDEVFWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEH 717

Query: 719  GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE 778
            GN AAIMLS GF+P TEPHLRGMLT  RAAQLWGLREK+RIFV +GRWLMG LDE GVLE
Sbjct: 718  GNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDESGVLE 777

Query: 779  GGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE 838
             GQCF+QVS P L NCFSKHGSRF+ETK L V+KGFV+IAKNPCLHPGD+R+LEAVD P+
Sbjct: 778  QGQCFVQVSTPSLENCFSKHGSRFSETKNLHVVKGFVIIAKNPCLHPGDVRVLEAVDAPD 837

Query: 839  LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKT 898
            LHHL DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSK+SW PMEY   E+K 
Sbjct: 838  LHHLNDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKL 897

Query: 899  LTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFP 958
             TR V  RDIIEFF ++MVNE+LG ICNAHVVHAD S+YGALDE CI LAELAATAVDFP
Sbjct: 898  KTRQVMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFP 957

Query: 959  KTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP 1018
            KTGK+VTMP HLKPKLYPDFMGKE +QSY+S KILGRLYR+ KDAYDEDI  +  ++   
Sbjct: 958  KTGKLVTMPPHLKPKLYPDFMGKERHQSYRSKKILGRLYRRIKDAYDEDID-APYLNFVT 1016

Query: 1019 VDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNS 1078
             DI YD DLEVP S DFIADAW QKCSYDGQL+GLL QYKV REEE+VTG IWSMPKYNS
Sbjct: 1017 GDIPYDKDLEVPGSADFIADAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNS 1076

Query: 1079 RKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEW 1138
            RKQGELKERLKHSYSAL+KEFR  FEK++SD   LSE+EKN  +E+KASAWYQVTYHPEW
Sbjct: 1077 RKQGELKERLKHSYSALKKEFRHTFEKLNSDVGELSEEEKNLFYEQKASAWYQVTYHPEW 1136

Query: 1139 VKKSLDL-------QEQDSARSVVLLSFAWIANDYLARIKIRCREM--ANIDTSKPVNYL 1189
            VKKSLDL       QE DS  S V+LSF WIA DYLAR KIR R     N D++KPV+ L
Sbjct: 1137 VKKSLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLARTKIRQRHQRCGNFDSTKPVDSL 1196

Query: 1190 ARYVADRI 1197
            A+Y+++R+
Sbjct: 1197 AKYLSERL 1204


>gi|449499234|ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score = 1764 bits (4569), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 841/1199 (70%), Positives = 1001/1199 (83%), Gaps = 4/1199 (0%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            M  E  EK++V  QVSFGGFD +VKA +L+ YLE+E+G V RCRLKTS TP ESYPDF V
Sbjct: 1    MGSEEGEKIVV-TQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEV 59

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
            +N A V K+DDY+KV PHAFVHF  P     A+ AAGR EL  N + LK SLGPE+PF +
Sbjct: 60   SNVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHI 119

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            NQR RT  PFKL DV V+IG L   D F VAWRGP+SG DFLVDPFDGTCKFCFT+D AF
Sbjct: 120  NQRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAF 179

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
            + K + +H  +KC++K+EF+VR+IN + +Y++ SC  ILLQL SSP +WYRTADDDI  L
Sbjct: 180  SFKDNNKHTFLKCDYKMEFIVRDINQITRYTDTSCYVILLQLTSSPCIWYRTADDDIAKL 239

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS 300
            VP+D+LDDDDPWIRTTDFT SGAIGRCN++R+S+  R+  KL+  + YL E+RV   SL+
Sbjct: 240  VPYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLN 299

Query: 301  RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG 360
            RP  I  EPD+ V M+D FFCI Y++ ISFEI+FLVNAVMHKGIINQHQ+SD FFDLLR 
Sbjct: 300  RPPKILNEPDYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRN 359

Query: 361  QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP 420
            Q  EVN+AAL HI++++ PV DACK+LKLVQEWLLK+P L K  K++ DIVE+RRLVITP
Sbjct: 360  QPNEVNLAALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVITP 419

Query: 421  TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
            +KAYC PPEVELSNRVLR+YKD+ADRFLRVTFMDEG++ +N++V +Y++APIV++IT +S
Sbjct: 420  SKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSS 479

Query: 481  FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540
            F QKT++F R++ IL  GF+LCGRK+SFLA+SS+QLRD SAWFF+E    SV  I  WMG
Sbjct: 480  FPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAILGWMG 539

Query: 541  RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAME 600
            +FT+KN+AKCAAR+GQCFSSTYAT+EVP   V+ +L D++RNGYVFSDGIG ITPDLA E
Sbjct: 540  KFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPDLAQE 599

Query: 601  VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSW 660
            VA KLK+D   PPCAYQIRYAG KGVVA WP+K DGIR++LR SMNKF+S+H  LEICSW
Sbjct: 600  VADKLKMD-GSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRILEICSW 658

Query: 661  TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGN 720
            TRFQPGFLNRQIITLLSTL+VPDE+FWSMQ++M+SKL++M+ D+DVAFEVLTA+CAEQGN
Sbjct: 659  TRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGN 718

Query: 721  TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
             AAIMLSAGF P+TEPHLRGML CIRAAQLWGLREKARIFV  GRW MGC DE GVL+ G
Sbjct: 719  AAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEG 778

Query: 781  QCFIQVSEPFLGNCFSKHGSRFAETK-KLQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
            QCFIQVS P L  CFSKHGS FAETK  L V++G VVIAKNPCLHPGD+RILEAVD PEL
Sbjct: 779  QCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPEL 838

Query: 840  HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL 899
            HHLYDCLVFP+ G+RPHTNEASGSDLDGDLYF TWD NLIPPSKKSWPPMEY  AE KTL
Sbjct: 839  HHLYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEVKTL 898

Query: 900  TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
             R + + DI+EFFAK+M+NE+LGTICNAHVVHAD S++GALDENCI L+ELAATAVDFPK
Sbjct: 899  QRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVDFPK 958

Query: 960  TGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSS-EVDINP 1018
            TGK+VTMP HLKPKLYPDFMGKEA QSYKS KILG++YR+ +DAYD+D  ++S E++  P
Sbjct: 959  TGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTP 1018

Query: 1019 VDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNS 1078
             D+HYD DLEV  + DFIA+AW+QKCSYDGQL+GLL QYKVNREEE+VTGHIWSMPKY S
Sbjct: 1019 GDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVS 1078

Query: 1079 RKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEW 1138
            RKQGELKE+LKHSYS L+K+FRQVFE +  + E L+ DE+NAL+E+KASAWYQV YHP W
Sbjct: 1079 RKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYHPTW 1138

Query: 1139 VKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
            +KKSL+L+E D+  +V +LSF WIA DYLARIKI+CR   + D +KP+N LA Y++DR+
Sbjct: 1139 LKKSLELREPDAPEAVPMLSFPWIAADYLARIKIKCRRTKSFDPTKPINSLASYLSDRM 1197


>gi|449441914|ref|XP_004138727.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
 gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase 6 [Cucumis sativus]
          Length = 1197

 Score = 1763 bits (4565), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 840/1199 (70%), Positives = 1001/1199 (83%), Gaps = 4/1199 (0%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            M  E  EK++V  QVSFGGFD +VKA +L+ YLE+E+G V RCRLKTS TP ESYPDF V
Sbjct: 1    MGSEEGEKIVV-TQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEV 59

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
            +N A V K+DDY+KV PHAFVHF  P     A+ AAGR EL  N + LK SLGPE+PF +
Sbjct: 60   SNVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHI 119

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            NQR RT  PFKL DV V+IG L   D F VAWRGP+SG DFLVDPFDGTCKFCFT+D AF
Sbjct: 120  NQRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAF 179

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
            + K + +H  +KC++K+EF+VR+IN + +Y++ SC  ILLQL +SP +WYRTADDDI  L
Sbjct: 180  SFKDNNKHTFLKCDYKMEFIVRDINQITRYTDTSCYVILLQLTASPCIWYRTADDDIAKL 239

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS 300
            VP+D+LDDDDPWIRTTDFT SGAIGRCN++R+S+  R+  KL+  + YL E+RV   SL+
Sbjct: 240  VPYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLN 299

Query: 301  RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG 360
            RP  I  EPD+ V M+D FFCI Y++ ISFEI+FLVNAVMHKGIINQHQ+SD FFDLLR 
Sbjct: 300  RPPKILNEPDYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRN 359

Query: 361  QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP 420
            Q  EVN+AAL HI++++ PV DACK+LKLVQEWLLK+P L K  K++ DIVE+RRLVITP
Sbjct: 360  QPNEVNLAALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVITP 419

Query: 421  TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
            +KAYC PPEVELSNRVLR+YKD+ADRFLRVTFMDEG++ +N++V +Y++APIV++IT +S
Sbjct: 420  SKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSS 479

Query: 481  FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540
            F QKT++F R++ IL  GF+LCGRK+SFLA+SS+QLRD SAWFF+E    SV  I  WMG
Sbjct: 480  FPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAILGWMG 539

Query: 541  RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAME 600
            +FT+KN+AKCAAR+GQCFSSTYAT+EVP   V+ +L D++RNGYVFSDGIG ITPDLA E
Sbjct: 540  KFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPDLAQE 599

Query: 601  VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSW 660
            VA KLK+D   PPCAYQIRYAG KGVVA WP+K DGIR++LR SMNKF+S+H  LEICSW
Sbjct: 600  VADKLKMD-GSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRILEICSW 658

Query: 661  TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGN 720
            TRFQPGFLNRQIITLLSTL+VPDE+FWSMQ++M+SKL++M+ D+DVAFEVLTA+CAEQGN
Sbjct: 659  TRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGN 718

Query: 721  TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
             AAIMLSAGF P+TEPHLRGML CIRAAQLWGLREKARIFV  GRW MGC DE GVL+ G
Sbjct: 719  AAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEG 778

Query: 781  QCFIQVSEPFLGNCFSKHGSRFAETK-KLQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
            QCFIQVS P L  CFSKHGS FAETK  L V++G VVIAKNPCLHPGD+RILEAVD PEL
Sbjct: 779  QCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPEL 838

Query: 840  HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL 899
            HHLYDCLVFP+ G+RPHTNEASGSDLDGDLYF TWD NLIPPSKKSWPPMEY  AE KTL
Sbjct: 839  HHLYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEVKTL 898

Query: 900  TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
             R + + DI+EFFAK+M+NE+LGTICNAHVVHAD S++GALDENCI L+ELAATAVDFPK
Sbjct: 899  QRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVDFPK 958

Query: 960  TGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSS-EVDINP 1018
            TGK+VTMP HLKPKLYPDFMGKEA QSYKS KILG++YR+ +DAYD+D  ++S E++  P
Sbjct: 959  TGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTP 1018

Query: 1019 VDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNS 1078
             D+HYD DLEV  + DFIA+AW+QKCSYDGQL+GLL QYKVNREEE+VTGHIWSMPKY S
Sbjct: 1019 GDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVS 1078

Query: 1079 RKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEW 1138
            RKQGELKE+LKHSYS L+K+FRQVFE +  + E L+ DE+NAL+E+KASAWYQV YHP W
Sbjct: 1079 RKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYHPTW 1138

Query: 1139 VKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
            +KKSL+L+E D+  +V +LSF WIA DYLARIKI+CR   + D +KP+N LA Y++DR+
Sbjct: 1139 LKKSLELREPDAPEAVPMLSFPWIAADYLARIKIKCRRTKSFDPTKPINSLASYLSDRM 1197


>gi|297819596|ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
 gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
          Length = 1197

 Score = 1730 bits (4480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 839/1199 (69%), Positives = 996/1199 (83%), Gaps = 4/1199 (0%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            M  EG  K  V  QVS GGF  +  A +L  YLE+E+G VWRCRLKTS TP  SYP+F +
Sbjct: 1    MGSEGSMKNSVVTQVSIGGFGESTTAKQLTDYLEDELGLVWRCRLKTSWTPPGSYPNFEI 60

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
             +T+ + K DDY+KVEPHAFVHFA+P    RA+DAAG+  L L+G+ LKVSLGP+NP+ L
Sbjct: 61   ADTSSIPKFDDYKKVEPHAFVHFAVPESAARAMDAAGQCNLILDGQPLKVSLGPKNPYTL 120

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            NQR RT+TP+KL  + +EIGTLVSRDEF V+WR  A G DFLVDPFD TCKFCF +  AF
Sbjct: 121  NQRRRTTTPYKLAGISLEIGTLVSRDEFLVSWR--ADGVDFLVDPFDNTCKFCFRKSTAF 178

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
            + K +  HAVI C++K+E LVR+I  V+QY       ++LQLASSPRVWYRTADDDI   
Sbjct: 179  SFKDAVMHAVINCDYKLELLVRDIQTVRQYKNSHGYVLILQLASSPRVWYRTADDDIHDT 238

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS 300
            +P D+LDDDDPWIRTTDFT  GAIGRC+SYR+ IS R+  KL+  + YL  RRVQ + + 
Sbjct: 239  IPVDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYEKKLTTALEYLRMRRVQEERVR 298

Query: 301  RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG 360
             P  IR EP F  P+SD FFCIH++EGISFEIMFLVN+V+H+G+ NQ QL++ FFDLLR 
Sbjct: 299  WPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRN 358

Query: 361  QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP 420
            Q ++VN+A+LKH+ +YK PVFDA KRLKLVQEW+LK+P+L  G +Q +DI E+RRLVITP
Sbjct: 359  QPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWILKNPKLLGGHEQSEDISEIRRLVITP 418

Query: 421  TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
            T+AYCLPPEVELSNRVLRKY+ +A+RFLRVTFMDE +QT+N+NVLSYF+APIV+D+T +S
Sbjct: 419  TRAYCLPPEVELSNRVLRKYRAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSS 478

Query: 481  FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540
            FSQKT VFKRV+SIL+ GF LCGRK+SFLAFS++QLRD SAWFF+EDGKT V DIK WMG
Sbjct: 479  FSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDSSAWFFAEDGKTRVSDIKAWMG 538

Query: 541  RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAME 600
            +F DKN+AKCAARMG CFSSTYATV+V P EV+ ELPDI+RNGYVFSDGIG ITPDLA E
Sbjct: 539  KFKDKNVAKCAARMGLCFSSTYATVDVMPNEVNTELPDIERNGYVFSDGIGTITPDLADE 598

Query: 601  VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSW 660
            V +KLKLD++  PCAYQIRYAG KGVVA WP+KGDGIR++LR+SM KF S HT LEICSW
Sbjct: 599  VMEKLKLDLHCTPCAYQIRYAGFKGVVARWPSKGDGIRLALRDSMKKFNSKHTILEICSW 658

Query: 661  TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGN 720
            TRFQPGFLNRQIITLLS L VPDE+FW MQ+SML KLN++L D+DVAFEVLTA+CAEQGN
Sbjct: 659  TRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQGN 718

Query: 721  TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
            TAAIMLSAGF P+TEPHLRGML+ +R AQLWGLREK+RIFV +GRWLMGCLDE G LE G
Sbjct: 719  TAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGKLEHG 778

Query: 781  QCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
            QCFIQVS+P + NCFSKHGSRF ETK  L+V+KG+V IAKNPCLHPGD+RILEAVD P+L
Sbjct: 779  QCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQL 838

Query: 840  HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL 899
            HH+YDCL+FP+KGDRPHTNEASGSDLDGDLYFV WD+ LIPP++KS+P M Y+AAE KTL
Sbjct: 839  HHMYDCLIFPKKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKTL 898

Query: 900  TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
             R V+ +DII+FFA++M NE+LGTICNAHVVHAD SEYGA+DE C+LLAELAATAVD PK
Sbjct: 899  GRAVNHQDIIDFFARNMANEHLGTICNAHVVHADRSEYGAMDEECVLLAELAATAVDSPK 958

Query: 960  TGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPV 1019
            TGKIV+MP HLKPKLYPDFMGKE YQ+YKS+KILGRLYR+ K+ YDED   SSE   +P 
Sbjct: 959  TGKIVSMPFHLKPKLYPDFMGKEDYQTYKSSKILGRLYRRVKEVYDEDAEASSEESSDPS 1018

Query: 1020 DIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSR 1079
            DI YD DLE+P   D I +AW  KCSYD QL GLL QYKV +EEE+VTGHIWSMPKY S+
Sbjct: 1019 DIPYDIDLEIPGFEDLIPEAWGHKCSYDRQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSK 1078

Query: 1080 KQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWV 1139
            KQ +LKERLKHSY++L+KEFR+VFE+   D E LSE+EKN L+E+KASAWY VTYHP+WV
Sbjct: 1079 KQCDLKERLKHSYNSLKKEFRKVFEETILDHEELSEEEKNILYEKKASAWYHVTYHPKWV 1138

Query: 1140 KKSLDLQEQDSARS-VVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
            KKSL+LQ+ D   S  V+LSFAWIA DYLA+IKIR  EM NID++KPV+ LA+++A R+
Sbjct: 1139 KKSLELQDPDEPSSHAVMLSFAWIAADYLAKIKIRSGEMGNIDSAKPVDSLAKFLAQRL 1197


>gi|357466249|ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago truncatula]
 gi|355492457|gb|AES73660.1| Rna-dependent RNA polymerase [Medicago truncatula]
          Length = 1188

 Score = 1721 bits (4456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 818/1181 (69%), Positives = 973/1181 (82%), Gaps = 10/1181 (0%)

Query: 24   VKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHF 83
             K ++LV YLE+++G V RCRLKTSCTP ESYP+F +T+T ++  TDDY+KV PHAFVHF
Sbjct: 11   TKTSDLVSYLESKIGYVDRCRLKTSCTPPESYPEFTMTDTKQIEITDDYKKVAPHAFVHF 70

Query: 84   AMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGRTSTPFKLPDVCVEIGTLV 143
             +P   T A++AAGR +L LNG+ LKV  GP+NP  LNQR RT  PFK+ DV VEIGTLV
Sbjct: 71   TLPDSATEALNAAGRCDLILNGKVLKVISGPQNPNFLNQRRRTEAPFKMSDVIVEIGTLV 130

Query: 144  SRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFKVEFLVRE 203
            S  +F VAWRG   G +FLVDPFD  CK CF RD AF+ K   + AVIKC+FKV FL+R+
Sbjct: 131  SPADFTVAWRGCDKGVNFLVDPFDKICKICFNRDTAFSFKGIGKQAVIKCDFKVGFLIRD 190

Query: 204  INLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGA 263
            I  +++Y + S + +LL+LASSP VWYRTADDDI   V  D+LDDDDPWIRTTDFTPSGA
Sbjct: 191  IEEIQRYDDTSHLVVLLRLASSPLVWYRTADDDIDESVTIDLLDDDDPWIRTTDFTPSGA 250

Query: 264  IGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFCIH 323
            IGRCN YRISI  RH  KL+K + YL  +RV    L RP  I+ EPDF VPMSD FF I 
Sbjct: 251  IGRCNYYRISIPPRHGAKLNKALEYLRRQRVPRIPLKRPPKIQNEPDFGVPMSDAFFYID 310

Query: 324  YEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDA 383
             ++ ISF+IMFL+NA++H+GI NQ+ LS+ FF+LL+ Q ++VNVAALKHI +YK PVFDA
Sbjct: 311  SQKDISFDIMFLINAIVHRGIFNQYSLSNKFFELLKNQPKDVNVAALKHICTYKHPVFDA 370

Query: 384  CKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDL 443
             KRL+ VQ+WLL++P+ Y+  KQ DD++EVRRLV+TPTKAYC+ PEVELSNRVLR+++++
Sbjct: 371  AKRLEAVQKWLLRNPKFYQISKQSDDVMEVRRLVVTPTKAYCISPEVELSNRVLRRFREV 430

Query: 444  ADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCG 503
            +DRFLRVTFMDEG QT+N   L+Y++APIV++IT NSF QKTR++KRV++IL  GFY CG
Sbjct: 431  SDRFLRVTFMDEGQQTLNNYALNYYVAPIVKEITSNSFQQKTRIYKRVKTILDDGFYFCG 490

Query: 504  RKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYA 563
            RK+SFLAFSS+QLRD SAWFF+ED   +  DI+ WMGRF  KN+AKCAARMGQCFSSTYA
Sbjct: 491  RKYSFLAFSSNQLRDRSAWFFAEDKDITCDDIRNWMGRFNQKNVAKCAARMGQCFSSTYA 550

Query: 564  TVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGC 623
            +VEVP  EV+  LPD++RN YVFSDGIG IT DLA+EVA+KLKLD    P AYQIRYAG 
Sbjct: 551  SVEVPANEVNSMLPDVERNNYVFSDGIGIITTDLAVEVAEKLKLD--KAPSAYQIRYAGF 608

Query: 624  KGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPD 683
            KGVVACWPAKGDGI++SLR SMNKFQS HTTLEIC+WTRFQPGFLNRQIITLLS L+VPD
Sbjct: 609  KGVVACWPAKGDGIKLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQIITLLSALDVPD 668

Query: 684  EMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLT 743
            E+FW MQ+ M+S LNQMLVD DVA++VLT +CAE GN AAIMLS GF+P+TEPHLRGML 
Sbjct: 669  EIFWKMQEGMISSLNQMLVDRDVAYDVLTKSCAEHGNAAAIMLSCGFSPKTEPHLRGMLN 728

Query: 744  CIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFA 803
             IRAAQLWGLREK+RIFV +GRWLMG LDELGVLE GQCF+QVS P L NCFSKHGSRF+
Sbjct: 729  SIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFS 788

Query: 804  ETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGS 863
            ETK + V+KG VVIAKNPCLHPGD+R+LEAVD P+LHHLYDC+VFPQKG+RPHT+EASGS
Sbjct: 789  ETKTVHVVKGIVVIAKNPCLHPGDVRVLEAVDVPDLHHLYDCVVFPQKGERPHTDEASGS 848

Query: 864  DLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGT 923
            DLDGDLYFVTWD NLIPPSK+SWPPMEY A E++  TR V  +DII+FF ++MVNE LG+
Sbjct: 849  DLDGDLYFVTWDGNLIPPSKRSWPPMEYAAQESRLQTRQVTVQDIIDFFVRNMVNEQLGS 908

Query: 924  ICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEA 983
            ICNAHVVHAD S+YGALDENC+ LAELAATAVDFPKTGK+VTMP++LKPKLYPDFMGKE 
Sbjct: 909  ICNAHVVHADSSDYGALDENCVHLAELAATAVDFPKTGKLVTMPSNLKPKLYPDFMGKEH 968

Query: 984  YQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQK 1043
            +QSYKS KILGRLYR+ KDAYD+DI  + E +    DI YDTDLEVP S +FIADAW Q+
Sbjct: 969  HQSYKSKKILGRLYRRIKDAYDKDID-APEFNCVSSDILYDTDLEVPGSSEFIADAWEQR 1027

Query: 1044 CSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVF 1103
            CSYDGQL+GLL QYKV  EEE+VTG IWSMPKYNSRKQGELKERLKHSYSAL+KEFRQ+F
Sbjct: 1028 CSYDGQLSGLLGQYKVKTEEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRQIF 1087

Query: 1104 EKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDL-------QEQDSARSVVL 1156
            EK+ SD   LS+ EKN L+E+KASAWYQVTYHP+WVKKSLDL       Q  DS  ++V+
Sbjct: 1088 EKLKSDVGELSDKEKNLLYEQKASAWYQVTYHPKWVKKSLDLQLKSSDNQSADSLGNMVM 1147

Query: 1157 LSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
            LSF WIA DYLA  K R R + + D++K V+ LA+Y+++R+
Sbjct: 1148 LSFPWIAVDYLACTKTRHRRVKDFDSTKQVDSLAKYLSERL 1188


>gi|8248473|gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana]
          Length = 1196

 Score = 1719 bits (4453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 835/1198 (69%), Positives = 989/1198 (82%), Gaps = 3/1198 (0%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            M  EG  K  V  QVS GGF  +  A +L  YLE+EVG VWRCRLKTS TP  SYP+F +
Sbjct: 1    MGSEGNMKKSVVTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEI 60

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
             +T+ +   D+Y+KVEPHAFVHFA+     RA+DAAG+  L L+G+ LKVSLGP+NP+ L
Sbjct: 61   ADTSNIPSIDEYKKVEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSL 120

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            NQR RT+ P+KL  + +EIGTLVSRD+FFV+WR  A G DFLVDPFD TCKFCF +  AF
Sbjct: 121  NQRRRTTVPYKLAGITLEIGTLVSRDDFFVSWR--AEGVDFLVDPFDNTCKFCFRKSTAF 178

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
            + K +  HAVI C++K+E LVR+I  V+QY       ++LQLASSPRVWYRTADDDI   
Sbjct: 179  SFKDAVMHAVINCDYKLELLVRDIQTVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDT 238

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS 300
            VP D+LDDDDPWIRTTDFT  GAIGRC+SYR+ IS R+  KL   + Y   RRVQ + + 
Sbjct: 239  VPGDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVR 298

Query: 301  RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG 360
             P  IR EP F  P+SD FFCIH++EGISFEIMFLVN+V+H+G+ NQ QL++ FFDLLR 
Sbjct: 299  WPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRN 358

Query: 361  QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP 420
            Q ++VN+A+LKH+ +YK PVFDA KRLKLVQEW+ K+P+L    +Q +DI E+RRLVITP
Sbjct: 359  QPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVITP 418

Query: 421  TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
            T+AYCLPPEVELSNRVLR+YK +A+RFLRVTFMDE +QT+N+NVLSYF+APIV+D+T +S
Sbjct: 419  TRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSS 478

Query: 481  FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540
            FSQKT VFKRV+SIL+ GF LCGRK+SFLAFS++QLRD SAWFF+EDGKT V DIK WMG
Sbjct: 479  FSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMG 538

Query: 541  RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAME 600
            +F DKN+AKCAARMG CFSSTYATV+V P EVD E+PDI+RNGYVFSDGIG ITPDLA E
Sbjct: 539  KFKDKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNGYVFSDGIGTITPDLAGE 598

Query: 601  VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSW 660
            V +KLKLDV+  PCAYQIRYAG KGVVA WP+K DGIR++LR+SM K  S HT LEICSW
Sbjct: 599  VMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKIFSKHTILEICSW 658

Query: 661  TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGN 720
            TRFQPGFLNRQIITLLS L VP E+FW MQ+SML KL+++LVD+DVAFEVLTA+CAEQGN
Sbjct: 659  TRFQPGFLNRQIITLLSVLGVPVEIFWDMQESMLYKLDRILVDTDVAFEVLTASCAEQGN 718

Query: 721  TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
            TAAIMLSAGF P+TEPHLRGML+ +R AQLWGLREK+RIFV +GRWLMGCLDE G+LE G
Sbjct: 719  TAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHG 778

Query: 781  QCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
            QCFIQVS+P + NCFSKHGSRF ETKK L+V+KG+V IAKNPCLHPGD+RILEAVD P+L
Sbjct: 779  QCFIQVSKPSIENCFSKHGSRFKETKKDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQL 838

Query: 840  HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL 899
            HH+YDCL+FPQKGDRPHTNEASGSDLDGDLYFV WD+ LIPP++KS+P M Y+AAE K+L
Sbjct: 839  HHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSL 898

Query: 900  TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
             R V+ +DII+FFA+++ NE LGTICNAHVVHAD SEYGA+DE C+LLAELAATAVDFPK
Sbjct: 899  GRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPK 958

Query: 960  TGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPV 1019
            TGKIV+MP HLKPKLYPDFMGKE YQ+YKSNKILGRLYR  K+ YDED   SSE   +P 
Sbjct: 959  TGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRPVKEVYDEDAEASSEESTDPS 1018

Query: 1020 DIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSR 1079
             I YD  LE+P   D I +AW  KCSYDGQL GLL QYKV +EEE+VTGHIWSMPKY S+
Sbjct: 1019 AIPYDAVLEIPGFEDLIPEAWGHKCSYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSK 1078

Query: 1080 KQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWV 1139
            KQGELKERLKHSY++L+KEFR+VFE+   D E LSE+EKN L+E+KASAWY VTYHPEWV
Sbjct: 1079 KQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWV 1138

Query: 1140 KKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
            KKSL+LQ+ D +    +LSFAWIA DYLARIKIR REM +ID++KPV+ LA+++A R+
Sbjct: 1139 KKSLELQDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFLAQRL 1196


>gi|15229153|ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
 gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName: Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6; AltName:
            Full=Protein SILENCING DEFECTIVE 1; AltName: Full=Protein
            SUPPRESSOR OF GENE SILENCING 2; AltName:
            Full=RNA-directed RNA polymerase 6
 gi|12324444|gb|AAG52184.1|AC012329_11 putative RNA-directed RNA polymerase; 73997-69985 [Arabidopsis
            thaliana]
 gi|6899955|emb|CAB71285.1| RNA-directed RNA polymerase-like protein [Arabidopsis thaliana]
 gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana]
 gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
          Length = 1196

 Score = 1719 bits (4452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 835/1198 (69%), Positives = 989/1198 (82%), Gaps = 3/1198 (0%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            M  EG  K  V  QVS GGF  +  A +L  YLE+EVG VWRCRLKTS TP  SYP+F +
Sbjct: 1    MGSEGNMKKSVVTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEI 60

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
             +T+ +   D+Y+KVEPHAFVHFA+     RA+DAAG+  L L+G+ LKVSLGP+NP+ L
Sbjct: 61   ADTSNIPSIDEYKKVEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSL 120

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            NQR RT+ P+KL  + +EIGTLVSRD+FFV+WR  A G DFLVDPFD TCKFCF +  AF
Sbjct: 121  NQRRRTTVPYKLAGITLEIGTLVSRDDFFVSWR--AEGVDFLVDPFDNTCKFCFRKSTAF 178

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
            + K +  HAVI C++K+E LVR+I  V+QY       ++LQLASSPRVWYRTADDDI   
Sbjct: 179  SFKDAVMHAVINCDYKLELLVRDIQTVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDT 238

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS 300
            VP D+LDDDDPWIRTTDFT  GAIGRC+SYR+ IS R+  KL   + Y   RRVQ + + 
Sbjct: 239  VPGDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVR 298

Query: 301  RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG 360
             P  IR EP F  P+SD FFCIH++EGISFEIMFLVN+V+H+G+ NQ QL++ FFDLLR 
Sbjct: 299  WPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRN 358

Query: 361  QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP 420
            Q ++VN+A+LKH+ +YK PVFDA KRLKLVQEW+ K+P+L    +Q +DI E+RRLVITP
Sbjct: 359  QPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVITP 418

Query: 421  TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
            T+AYCLPPEVELSNRVLR+YK +A+RFLRVTFMDE +QT+N+NVLSYF+APIV+D+T +S
Sbjct: 419  TRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSS 478

Query: 481  FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540
            FSQKT VFKRV+SIL+ GF LCGRK+SFLAFS++QLRD SAWFF+EDGKT V DIK WMG
Sbjct: 479  FSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMG 538

Query: 541  RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAME 600
            +F DKN+AKCAARMG CFSSTYATV+V P EVD E+PDI+RNGYVFSDGIG ITPDLA E
Sbjct: 539  KFKDKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNGYVFSDGIGTITPDLADE 598

Query: 601  VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSW 660
            V +KLKLDV+  PCAYQIRYAG KGVVA WP+K DGIR++LR+SM KF S HT LEICSW
Sbjct: 599  VMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICSW 658

Query: 661  TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGN 720
            TRFQPGFLNRQIITLLS L VPDE+FW MQ+SML KLN++L D+DVAFEVLTA+CAEQGN
Sbjct: 659  TRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQGN 718

Query: 721  TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
            TAAIMLSAGF P+TEPHLRGML+ +R AQLWGLREK+RIFV +GRWLMGCLDE G+LE G
Sbjct: 719  TAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHG 778

Query: 781  QCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
            QCFIQVS+P + NCFSKHGSRF ETK  L+V+KG+V IAKNPCLHPGD+RILEAVD P+L
Sbjct: 779  QCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQL 838

Query: 840  HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL 899
            HH+YDCL+FPQKGDRPHTNEASGSDLDGDLYFV WD+ LIPP++KS+P M Y+AAE K+L
Sbjct: 839  HHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSL 898

Query: 900  TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
             R V+ +DII+FFA+++ NE LGTICNAHVVHAD SEYGA+DE C+LLAELAATAVDFPK
Sbjct: 899  GRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPK 958

Query: 960  TGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPV 1019
            TGKIV+MP HLKPKLYPDFMGKE YQ+YKSNKILGRLYR+ K+ YDED   SSE   +P 
Sbjct: 959  TGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEESTDPS 1018

Query: 1020 DIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSR 1079
             I YD  LE+P   D I +AW  KC YDGQL GLL QYKV +EEE+VTGHIWSMPKY S+
Sbjct: 1019 AIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSK 1078

Query: 1080 KQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWV 1139
            KQGELKERLKHSY++L+KEFR+VFE+   D E LSE+EKN L+E+KASAWY VTYHPEWV
Sbjct: 1079 KQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWV 1138

Query: 1140 KKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
            KKSL+LQ+ D +    +LSFAWIA DYLARIKIR REM +ID++KPV+ LA+++A R+
Sbjct: 1139 KKSLELQDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFLAQRL 1196


>gi|167995454|gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1692 bits (4382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 818/1200 (68%), Positives = 967/1200 (80%), Gaps = 6/1200 (0%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            M  EG EK LV  Q+S GGFD +V A  L +YLE +VG VWRCRLK S TP +SYP F V
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV 60

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
             +   V++  DYEKV PHAFVHFA       A+ AAG  EL L  + L VSLGPENP+RL
Sbjct: 61   -DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRL 119

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            NQR RT+ PFK  DV +E+G LVS+D+F V WRGP +G DFLVDPF+G CK  FT+D AF
Sbjct: 120  NQRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAF 179

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
            + +    HA+IKC FK+EFLVREIN +K+  +F+ + ILLQLASSP V+YRTADDDI   
Sbjct: 180  SFRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEES 239

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSL- 299
            V FD+LDDDD WIRTTD T SGAIGRCN+YRISI  R+     K + Y    RV +  + 
Sbjct: 240  VAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMC 299

Query: 300  -SRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLL 358
              + + +R+EPDF V MSDPFFC    EGISF++MFLVNAV+HKGI+NQHQ+++ FF LL
Sbjct: 300  NRKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLL 358

Query: 359  RGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVI 418
            R    EVN+AALKH++SYKWPV DA ++L  +++WLLK+P+L +   ++DDIVEVRRLVI
Sbjct: 359  RSHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVI 418

Query: 419  TPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITL 478
            TPTKAYCLPP VELSNRVLR YK +ADRFLRVTFMDEG++ +N NVL+Y+ A IVR+IT 
Sbjct: 419  TPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITS 478

Query: 479  NSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKW 538
            NS  Q+T +F+RV+SILS GF+LCGRK+SFLAFS++QLRD SAWFF+ED K  V  I  W
Sbjct: 479  NSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISW 538

Query: 539  MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLA 598
            MGRF+++N+AKCAARMGQCFSSTYATVEVP +EV+ ELPDI+RNGYVFSDGIG I+ DLA
Sbjct: 539  MGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLA 598

Query: 599  MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEIC 658
            +EVA+KL L VNPP  AYQIRYAGCKGVVACWP K DGIR+SLR SM KF S+HT LEIC
Sbjct: 599  VEVAEKLHLSVNPP-SAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEIC 657

Query: 659  SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ 718
            SWTRFQPGFLNRQI+TLLS+L+V D +FW MQ  M+S L++MLVDSDVAF+V+TA+CAE 
Sbjct: 658  SWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEA 717

Query: 719  GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE 778
            GNTAAIMLSAGF PQ+EPHLRGML+ IRA+QL  LR KARIFVP+GRWLMGCLDELG LE
Sbjct: 718  GNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELE 777

Query: 779  GGQCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHP 837
             GQCFIQVS P L NCF KHG +F++ KK LQV+KG VVIAKNPCLHPGD+RILEAVD P
Sbjct: 778  QGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVP 837

Query: 838  ELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAK 897
             LHHLYDCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSKKSW PM Y  AE K
Sbjct: 838  GLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVK 897

Query: 898  TLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDF 957
             + R V+  DII+FF+K+MV E+LG ICNAHVVHAD SE+GALDE C+ LAELAA AVDF
Sbjct: 898  QMGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDF 957

Query: 958  PKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDIN 1017
            PKTGK+VTMP  LKPK+YPDFMGKE +QSYKS KILG+LYRQ KD  D +  VS+ +++ 
Sbjct: 958  PKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELV 1017

Query: 1018 PVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYN 1077
            P DI YD+ LE+P S  FI DAWN KCSYDGQL+GLL QYKVNREEE+VTGHIWSMPKY+
Sbjct: 1018 PNDIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYS 1077

Query: 1078 SRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPE 1137
            ++KQGELKERLKH+Y+ LRKEFR VFE+M+ D +LL +DEKN ++ERKASAWYQVTY+P 
Sbjct: 1078 AKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPH 1137

Query: 1138 WVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
            WV +SL+LQ  D+  S V+LSFAWIA DYLARIKIR R +   D++KP+N L RY+ D I
Sbjct: 1138 WVARSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>gi|297748117|gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1690 bits (4376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 817/1200 (68%), Positives = 964/1200 (80%), Gaps = 6/1200 (0%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            M  EG EK LV  Q+S GGFD +V A  L +YLE +VG VWRCRLK S TP +SYP  Y 
Sbjct: 1    MGSEGCEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPT-YD 59

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
             +  +V++ ++YEKV PHAFVHFA       A+ AAG  EL L  + L VSLGPENP+RL
Sbjct: 60   IDAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRL 119

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            NQR RT+ PFK  DV VE+G LVS+D+F V WRGP +G DFLVDPF+GTCK  FT+D AF
Sbjct: 120  NQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAF 179

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
            + +    HA+IKC FK+EFLVREIN +K+  +F+ + IL QLASSP V+YRTADDDI   
Sbjct: 180  SFRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEES 239

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSL- 299
            V FD+LDDDD WIRTTD T SGAIGRCN+YRISI  R+     K + Y   RRV +  + 
Sbjct: 240  VAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMC 299

Query: 300  -SRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLL 358
              + + +++EPDF V MSDPFFC    EGISF ++FLVNAV+HKGI+NQHQ+++ FF LL
Sbjct: 300  NRKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLL 358

Query: 359  RGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVI 418
            R    EVN AALKH++SYKWPV DA ++L  +Q+WLLK+P+L     ++DDIVEVRRLVI
Sbjct: 359  RSHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVI 418

Query: 419  TPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITL 478
            TPTKAYCLPP VELSNRVLR YK +ADRFLRVTFMDEG++ +N NVL+Y+ A IVR+IT 
Sbjct: 419  TPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITS 478

Query: 479  NSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKW 538
            NS  Q+T +F+RV+SILS GF+LCGRK+SFLAFS++QLRD SAWFF+ED K  V  I  W
Sbjct: 479  NSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISW 538

Query: 539  MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLA 598
            MGRF+++N+AKCAARMGQCFSSTYATVEVP +EV+ ELPDI+RNGYVFSDGIG I+ DLA
Sbjct: 539  MGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLA 598

Query: 599  MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEIC 658
            +EVA+KL L VNPP  AYQIRYAGCKGVVACWP K DGIR+SLR SM KF S+HT LEIC
Sbjct: 599  IEVAEKLHLSVNPP-SAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEIC 657

Query: 659  SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ 718
            SWTRFQPGFLNRQI+TLLS+L+V D +FW MQ  M+S L++MLVDSDVAF+V+TA+CAE 
Sbjct: 658  SWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEA 717

Query: 719  GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE 778
            GNTAA+MLSAGF PQ+EPHLRGML+ IRA+QL  LR KARIFVP+GRWLMGCLDELG LE
Sbjct: 718  GNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELE 777

Query: 779  GGQCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHP 837
             GQCFIQVS P L NCF KHG +F++ KK LQV+KG VVIAKNPCLHPGD+RILEAVD P
Sbjct: 778  QGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVP 837

Query: 838  ELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAK 897
             L HLYDCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSKKSW PM Y  AE K
Sbjct: 838  SLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVK 897

Query: 898  TLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDF 957
             L R V+  DII+FF+K+MV E+LG ICNAHVVHAD SE+GALDE C+ LAELAA AVDF
Sbjct: 898  QLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDF 957

Query: 958  PKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDIN 1017
            PKTGK+VTMP  LKPK+YPDFMGKE +QSYKS KILG+LYRQ KD  D +  VS+ +++ 
Sbjct: 958  PKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVV 1017

Query: 1018 PVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYN 1077
            P DI YDT LE+  S  FI DAWN KCSYDGQLNGLL QYKVNREEE+VTG+IWSMPKYN
Sbjct: 1018 PKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYN 1077

Query: 1078 SRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPE 1137
            ++KQGELKERLKH+Y+ LRKEFR VFE+M+ D +LL +DEKN ++ERKASAWYQVTYHP 
Sbjct: 1078 AKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPH 1137

Query: 1138 WVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
            WV +SL+LQ  D+  + V+LSFAWIA DYLARIKIR R +   D++KP+N L RY+ D I
Sbjct: 1138 WVARSLELQLADAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197


>gi|226596555|gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score = 1688 bits (4372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 816/1200 (68%), Positives = 964/1200 (80%), Gaps = 6/1200 (0%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            M  EG EK LV  Q+S GGFD +V A  L +YLE +VG VWRCRLK S TP +SYP  Y 
Sbjct: 1    MGSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPT-YD 59

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
             +   V++ ++YEKV PHAFVHFA       A+ AAG  EL L  + L VSLGPENP+RL
Sbjct: 60   IDAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRL 119

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            NQR RT+ PFK  DV VE+G LVS+ +F V WRGP +G DFLVDPF+GTCK  FT+D  F
Sbjct: 120  NQRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVF 179

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
            + +    HA+IKC FK+EFLVREIN +K+  +F  + ILLQLASSP V+YRTADDDI   
Sbjct: 180  SFRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEES 239

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSL- 299
            V FD+LDDDD WIRTTD T SGAIGRCN+YRISI  R+     K + Y    RV +  + 
Sbjct: 240  VAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMC 299

Query: 300  -SRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLL 358
              + + +R+EPDF V MSDPFFC    EGISF+++FL NAV+HKGI+NQHQ+ + FF LL
Sbjct: 300  NRKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVLFLANAVLHKGIVNQHQMINEFFYLL 358

Query: 359  RGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVI 418
            R    EVN+AALKH++SYKWPV DA ++L  +Q+WLLK+P+L +   ++DDIVEVRRLVI
Sbjct: 359  RSHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVI 418

Query: 419  TPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITL 478
            TPTKAYCLPP VELSNRVLR YK +ADRFLRVTFMDEG++ +N NVL+Y+ A IVR+IT 
Sbjct: 419  TPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITS 478

Query: 479  NSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKW 538
            NS  Q+T +F+RV+SILS GF+LCGRK+SFLAFS++QLRD SAWFF+ED K  V  I  W
Sbjct: 479  NSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISW 538

Query: 539  MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLA 598
            MGRF+++N+AKCAARMGQCFSSTYATVEVP +EV+ ELPDI+RNGYVFSDGIG I+ DLA
Sbjct: 539  MGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLA 598

Query: 599  MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEIC 658
            +EVA+KL L VNPP  AYQIRYAGCKGVVACWP K DGIR+SLR SM KF S+HT LEIC
Sbjct: 599  IEVAEKLHLSVNPP-AAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEIC 657

Query: 659  SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ 718
            SWTRFQPGFLNRQI+TLLS+L+V D +FW MQ  M++ L++MLVDSDVAF+V+TA+CAE 
Sbjct: 658  SWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEA 717

Query: 719  GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE 778
            GNTAA+MLSAGF PQ+EPHLRGML+ IRA+QL  LR KARIFVP+GRWLMGCLDELG LE
Sbjct: 718  GNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELE 777

Query: 779  GGQCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHP 837
             GQCFIQVS P L NCF KHGS+F++ KK LQV+KG VVIAKNPCLHPGD+RILEAVD P
Sbjct: 778  QGQCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVP 837

Query: 838  ELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAK 897
             L HLYDCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDEN+IPPSKKSW PM Y  AE K
Sbjct: 838  SLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVK 897

Query: 898  TLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDF 957
             L R V+  DII+FF+K+MV E+LG ICNAHVVHAD SE+GALDE C+ LAELAA AVDF
Sbjct: 898  QLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDF 957

Query: 958  PKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDIN 1017
            PKTGK+VTMP  LKPK+YPDFMGKE +QSYKS KILG+LYRQ KD  D +  VS+ +++ 
Sbjct: 958  PKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVV 1017

Query: 1018 PVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYN 1077
            P DI YDT LE+  S  FI DAWN KCSYDGQLNGLL QYKVNREEE+VTGHIWSMPKY+
Sbjct: 1018 PKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYS 1077

Query: 1078 SRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPE 1137
            ++KQGELKERLKH+Y+ LRKEFR VFE+M+ D +LL +DEKN ++ERKASAWYQVTYHP 
Sbjct: 1078 AKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPH 1137

Query: 1138 WVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
            WV +SL+LQ  D+  S V+LSFAWIA DYLARIKIR R +   D++KP+N L RY+AD+I
Sbjct: 1138 WVARSLELQIPDAVSSTVMLSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRYLADKI 1197


>gi|51989472|gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score = 1677 bits (4344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 817/1200 (68%), Positives = 965/1200 (80%), Gaps = 6/1200 (0%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            M  EG EK LV  Q+S GGFD +V A  L +YLE +VG VWRCRLK S TP +SYP + V
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDV 60

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
             + A V +  DYEKV PHAFVHFA       A+ AAG   L L  + L VSLGPENP+RL
Sbjct: 61   -DAARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRL 119

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            NQR RT+ PFK  DV VE+G LVS+D+F V WRGP +G DF VDPF+G CK  FT+D AF
Sbjct: 120  NQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAF 179

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
            + +   +HA+IKC FK+EF+VREIN +K++ +F+ + ILLQLASSP V+YRTADDDI   
Sbjct: 180  SFRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEES 239

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSL- 299
            V FD+LDDDD WIRTTD T SGAIGRCN+YRISI  R+     K + Y    RV +  + 
Sbjct: 240  VAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMC 299

Query: 300  -SRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLL 358
              + + +R+EPDF V MSDPFFC    EGISF++MFLVNAV+HKGI+NQHQ+++ FF LL
Sbjct: 300  NRKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLL 358

Query: 359  RGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVI 418
            R    EVN+AALKH++SYKWPV DA ++L  +Q+WLLK+P+L +   ++DDIVEVRRLVI
Sbjct: 359  RSHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVI 418

Query: 419  TPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITL 478
            TPTKAYCLPP VELSNRVLR YK +ADRFLRVTFMDEG++ +N NVL+Y+ A IVR+IT 
Sbjct: 419  TPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITS 478

Query: 479  NSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKW 538
            NS  Q+T +F+RV+SILS GF+LCGRK+SFLAFS++QLRD SAWFF+ED K  V  I  W
Sbjct: 479  NSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISW 538

Query: 539  MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLA 598
            MGRF+++N+AKCAARMGQCFSSTYATVEVP +EV+ ELPDI+RNGYVFSDGIG I+ DLA
Sbjct: 539  MGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLA 598

Query: 599  MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEIC 658
            +EVA+KL L VNPP  AYQIRYAGCKGVVACWP K DGI +SLR SM KF S+HT LEIC
Sbjct: 599  LEVAEKLHLSVNPP-SAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEIC 657

Query: 659  SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ 718
            SWTRFQPGFLNRQI+TLLS+L+V D +FW MQ  M+S LN+MLVDSDVAF+V+TA+CAE 
Sbjct: 658  SWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEA 717

Query: 719  GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE 778
            GNTAAIMLSAGF PQ+EPHLRGML+ IRA+QL  LR KARIFVP+GRWLMGCLDELG LE
Sbjct: 718  GNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELE 777

Query: 779  GGQCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHP 837
             GQCFIQVS P L NCF KHG +F++ KK LQV+KG VVIAKNPCLHPGD+RILEAVD P
Sbjct: 778  QGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVP 837

Query: 838  ELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAK 897
             LHHLYDCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSKKSW PM Y  AE K
Sbjct: 838  GLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVK 897

Query: 898  TLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDF 957
             L R V+  DII+FF+K+MV E+LG ICNAHVVHAD SE+GALDE C+ LAELAA AVDF
Sbjct: 898  QLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDF 957

Query: 958  PKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDIN 1017
            PKTGK+VTMP  LKPK+YPDFMGKE +QSYKS KILG+LYRQ KD  D +  VS+ +++ 
Sbjct: 958  PKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELV 1017

Query: 1018 PVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYN 1077
            P DI YD+ LE+P S  F+ DAWN KCSYDGQL+GLL QYKVNREEE+VTGHIWSMPKY+
Sbjct: 1018 PNDIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYS 1077

Query: 1078 SRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPE 1137
            ++KQGELKERLKH+Y+ LRKEFR VFE+MD D +LL +DEKN ++ERKASAWYQVTY+P 
Sbjct: 1078 AKKQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPH 1137

Query: 1138 WVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
            WV +SL+LQ  D+  S V+LSFAWIA DYLARI IR R +   D++KP+N L RY+ D I
Sbjct: 1138 WVARSLELQLPDAVSSTVMLSFAWIAADYLARINIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>gi|194719815|emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1675 bits (4338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 817/1200 (68%), Positives = 965/1200 (80%), Gaps = 6/1200 (0%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            M  EG EK LV  Q+S GGFD +V A  L +YLE +VG VWRCRLK S TP +SYP  Y 
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPT-YD 59

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
             +   V +  DYEKV PHAFVHFA       A+ AAG  EL L  + L VSLGPENP+RL
Sbjct: 60   IDAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRL 119

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            NQR RT+ PFK  DV VE+G LVS+D+F V WRGP +G DFLVDPF+GTCK  FT+D AF
Sbjct: 120  NQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAF 179

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
            + +    HA+IKC FK+EFLVREIN +K+  +F+ + IL QLASSP V+YRTADDDI   
Sbjct: 180  SFRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEES 239

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSL- 299
            V FD+LDDDD WIRTTD T SGAIGRCN+YRISI  R+     K + Y   RRV +  + 
Sbjct: 240  VAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMC 299

Query: 300  -SRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLL 358
              + + +++EPDF V MSDPFFC    EGISF++MFLVNAV+HKGI+NQHQ+++ FF LL
Sbjct: 300  NRKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLL 358

Query: 359  RGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVI 418
            R +  EVN+AALKH++SYKWPV DA ++L  +Q+WLLK+P+L +   ++DDIVEVRRLVI
Sbjct: 359  RSRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVI 418

Query: 419  TPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITL 478
            TPTKAYCLPP VELSNRVLR YK +ADRFLRVTFMDEG++ +N NVL+Y+ A IVR+IT 
Sbjct: 419  TPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITS 478

Query: 479  NSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKW 538
            NS  Q+T +F+RV+SILS GF+LCGRK+SFLAFS++QLRD SAWFF+ED K  V  I  W
Sbjct: 479  NSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISW 538

Query: 539  MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLA 598
            MGRF+++N+AKCAARMGQCFSSTYATVEVP +EV+ ELPDI+RNGYVFSDGIG I+ DLA
Sbjct: 539  MGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLA 598

Query: 599  MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEIC 658
            +EVA+KL L+VNPP  AYQIRYAG KGVVACWP K DGI +SLR SM KF S+HT LEIC
Sbjct: 599  IEVAEKLHLNVNPP-SAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEIC 657

Query: 659  SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ 718
            SWTRFQPGFLNRQI+TLLS+L+V D +FW MQ  M+S L++MLVDSDVAF+V+TA+CAE 
Sbjct: 658  SWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEA 717

Query: 719  GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE 778
            GNTAA+MLSAGF PQ+EPHLRGML+ IRA+QL  LR KARIFVP+GRWLMGCLDELG LE
Sbjct: 718  GNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELE 777

Query: 779  GGQCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHP 837
             GQCFIQVS P L NCF KHG +F++ KK LQV+KG VVIAKNPCLHPGD+RILEAVD P
Sbjct: 778  QGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVP 837

Query: 838  ELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAK 897
             L HLYDCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSKKSW PM Y  AE K
Sbjct: 838  SLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVK 897

Query: 898  TLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDF 957
             L R V+  DII+FF+K+MV E+LG ICNAHVVHAD SE+GALDE C+ LAELAA AVDF
Sbjct: 898  QLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDF 957

Query: 958  PKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDIN 1017
            PKTGK+VTMP  LKPK+YPDFMGKE +QSYKS KILG+LYRQ KD  D +  VS+ +++ 
Sbjct: 958  PKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVV 1017

Query: 1018 PVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYN 1077
            P DI YDT L +P S  FI DAWN KCSYDGQL+GLL QYKVNREEE+VTGHIWSMPKY+
Sbjct: 1018 PKDIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYS 1077

Query: 1078 SRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPE 1137
            ++KQGELKERLKH+Y+ LRKEFR VFE+MD D +LL +DEKN ++ERKASAWYQVTY+P 
Sbjct: 1078 AKKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPH 1137

Query: 1138 WVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
            WV +SL+LQ  D+  S V+LSFAWIA DYLARIKIR R +   D++KP+N L RY+ D+I
Sbjct: 1138 WVARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197


>gi|163930853|dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1674 bits (4334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 815/1200 (67%), Positives = 964/1200 (80%), Gaps = 6/1200 (0%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            M  EG EK LV  Q+S GGFD +V A  L +YLE +VG VWRCRLK S TP +SYP  Y 
Sbjct: 1    MGSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPT-YD 59

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
             +  +V++ ++YEKV PHAFVHFA       A+ AAG  EL L  + L VSLGPENP+RL
Sbjct: 60   IDAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRL 119

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            NQR RT+ PFK  DV VE+G LVS+D+F V WRGP +G DF VDPF+GTCK  FT+D AF
Sbjct: 120  NQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAF 179

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
            + +    HA+IKC FK+EF+VREIN +K+  +F+ + ILLQLASSP V+YRTADDDI   
Sbjct: 180  SFRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEES 239

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSL- 299
            V FD+LDDDD WIRTTD T SGAIGRCN+YRISI  R+     K + Y    RV +  + 
Sbjct: 240  VAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMC 299

Query: 300  -SRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLL 358
              + + +++EPDF V MSDPFFC    EGISF++MFLVNAV+HKGI+NQHQ+++ FF LL
Sbjct: 300  NRKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLL 358

Query: 359  RGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVI 418
            R +  EVN AALKH++SYKWPV DA ++L  +Q+WLLK+P+L     ++DDIVEVRRLVI
Sbjct: 359  RSRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVI 418

Query: 419  TPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITL 478
            TPTKAYCLPP VELSNRVLR YK +ADRFLRVTFMDEG++ +N NVL+Y+ A IVR+IT 
Sbjct: 419  TPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITS 478

Query: 479  NSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKW 538
            NS  Q+T +F+RV+SILS GF+LCGRK+SFLAFS++QLRD SAWFF+ED K  V  I  W
Sbjct: 479  NSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISW 538

Query: 539  MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLA 598
            MGRF+++N+AKCAARMGQCFSSTYATVEVP  EV+ ELPDI+RNGYVFSDGIG I+ DLA
Sbjct: 539  MGRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLA 598

Query: 599  MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEIC 658
            +EVA+KL L VNPP  AYQIRYAGCKGVVACWP K DGIR+SLR SM KF S+HT LEIC
Sbjct: 599  IEVAEKLHLSVNPP-SAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEIC 657

Query: 659  SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ 718
            SWTRFQPGFLNRQI+TLLS+L+V D +FW MQ  M+S L++MLVDSDVAF+V+TA+CAE 
Sbjct: 658  SWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEA 717

Query: 719  GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE 778
            GNTAAIMLSAGF PQ+EPHLRGML+ IRA+QL  LR KARIFVP+GRWLMGCLDELG LE
Sbjct: 718  GNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELE 777

Query: 779  GGQCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHP 837
             GQCFIQVS P L NCF KHG +F++ K+ LQV+KG VVIAKNPCLHPGD+RILEAVD P
Sbjct: 778  QGQCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVP 837

Query: 838  ELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAK 897
             L HLYDCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSKKSW PM Y  AE K
Sbjct: 838  SLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVK 897

Query: 898  TLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDF 957
             L R V+  DII+FF+K+MV E+LG ICNAHVVHAD SE+GALDE C+ LAELAA AVDF
Sbjct: 898  QLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDF 957

Query: 958  PKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDIN 1017
            PKTGK+VTMP  LKPK+YPDFMGKE +QSYKS KILG+LYRQ KD  D +  VS+ +++ 
Sbjct: 958  PKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVV 1017

Query: 1018 PVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYN 1077
            P DI YD+ LE+  S  FI DAWN KCSYDGQL+GLL QYKVNREEE+VTGHIWSMPKY+
Sbjct: 1018 PKDIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYS 1077

Query: 1078 SRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPE 1137
            ++KQGELKERLKH+Y+ LRKEFR VFE+MD D +LL +DEKN ++ERKASAWYQVTYHP 
Sbjct: 1078 AKKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPH 1137

Query: 1138 WVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
            WV +SL+LQ  D+  + V+LSFAWIA DYLARIKIR R +   D++KP+N L RY+ D I
Sbjct: 1138 WVARSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197


>gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
          Length = 1197

 Score = 1644 bits (4256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 800/1199 (66%), Positives = 946/1199 (78%), Gaps = 4/1199 (0%)

Query: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
            M  E  +  +V  Q+S GGF  +V A  L +YLE +VG VWRCRLKTS TP +SYP  Y 
Sbjct: 1    MGSEDSDMNIVVTQISVGGFSNDVNAKMLSEYLEEQVGQVWRCRLKTSSTPPDSYPT-YD 59

Query: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
             +  +VR+ ++Y KVEPHAFVHFA       A+ AA R ELFL  + LKVSLGPEN F +
Sbjct: 60   IDVEKVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENTFNM 119

Query: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
            N+R RT  P+K  DV VEIG LVS D+F V WRGP SG +FLVDPF+G CK  FTRD AF
Sbjct: 120  NERRRTFMPYKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGKCKILFTRDTAF 179

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
              K   +HAVIKC FK+EFL+REIN + +  +FS + +LLQLASSP V+YRTADDDI   
Sbjct: 180  CFKGEGKHAVIKCNFKIEFLLREINEINECKDFSSLVLLLQLASSPLVFYRTADDDIEES 239

Query: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQV-DSL 299
            V FD+LDDDD WIRTTD T SGAIGR N+YR+SI  R+     K + Y  E RV V +  
Sbjct: 240  VAFDLLDDDDQWIRTTDITFSGAIGRFNTYRVSIRPRNGPSFKKAMNYFRESRVPVVEQG 299

Query: 300  SRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLR 359
             + + +R EPDF   +S+PFFC    EGISF+++FLVNAV+HKGI+NQHQ++  FF LLR
Sbjct: 300  EQMLRVRNEPDFGESVSEPFFCFQNHEGISFKVLFLVNAVLHKGIVNQHQMTAEFFSLLR 359

Query: 360  GQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVIT 419
                 VN+AALKHI+SYK PV DA ++L  VQ+WL  +P L +   Q+DD+VEVRRLVIT
Sbjct: 360  KHQEGVNLAALKHIFSYKRPVNDAIRKLASVQKWLFNNPNLLERTGQLDDVVEVRRLVIT 419

Query: 420  PTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLN 479
            PTKAYCLPP VELSNRVLRKYK ++DRFLRVTFMDEG++ +N N L+Y+ A IVR+IT +
Sbjct: 420  PTKAYCLPPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYAANIVREITSS 479

Query: 480  SFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWM 539
            S  Q+T +F+RV+ I++ GFYLCGR++SFLAFS++QLRD SAWFF+E  +  V  I  WM
Sbjct: 480  SNPQRTGIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVTSIINWM 539

Query: 540  GRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAM 599
            G+F ++N+AKCAARMGQCFSSTYATVEV P+EV+ ELPDI+RNGYVFSDGIG +T DL++
Sbjct: 540  GKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMTADLSI 599

Query: 600  EVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICS 659
            EVA KL+L VNPP CAYQIRYAGCKGVVACWPA+ DGIR+SLR SM KF S+HT LEICS
Sbjct: 600  EVAAKLQLSVNPP-CAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICS 658

Query: 660  WTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQG 719
            WTR QPGFLNRQIITLLS+L V DEMFW MQ  MLSKL+++LVDSDVAF+V+TA+CAE G
Sbjct: 659  WTRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAG 718

Query: 720  NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG 779
            NTAAIMLSAGF PQ+EPHLRGML  IRAAQL  LR K R+FV +GRWLMGCLDELG LE 
Sbjct: 719  NTAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQ 778

Query: 780  GQCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHPE 838
            GQCFIQVS P L  CF KHG  F+E KK LQV+KG VVIAKNPCLHPGD+RILEAVD P 
Sbjct: 779  GQCFIQVSSPSLETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPG 838

Query: 839  LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKT 898
            LHHLYDCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSKKSW PM Y  AEAK 
Sbjct: 839  LHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQ 898

Query: 899  LTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFP 958
            L R V   DII+FF K+MV E+LG ICNAHVVHAD SE+GA+DE C+ LAELAA AVDFP
Sbjct: 899  LGRQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAALAVDFP 958

Query: 959  KTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP 1018
            KTGK+VTMP  LKPK+YPDFMGKE +QSY+S KILG+LYRQ  D YD +   SS ++  P
Sbjct: 959  KTGKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVIDVYDAEGGESSGLEYVP 1018

Query: 1019 VDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNS 1078
             DI YDT+LE+P   DFI DAWN KCSYDGQLNGLL QYKVN EEE+VTGHIWSMPKY++
Sbjct: 1019 KDIPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSA 1078

Query: 1079 RKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEW 1138
            +KQGELKERLKH+Y+ LRKEFR VFE+M+ D +LL  DEKN ++ERKA AWY+VTYHP W
Sbjct: 1079 KKQGELKERLKHAYNMLRKEFRNVFEQMEPDFDLLPIDEKNDMYERKAFAWYRVTYHPHW 1138

Query: 1139 VKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
            V +SL+LQ  D+  + V+LSFAWIA DY+ARIKIR R M N D++KP++ L RY+ ++I
Sbjct: 1139 VTRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNFDSTKPIDSLGRYLVNKI 1197


>gi|296082033|emb|CBI21038.3| unnamed protein product [Vitis vinifera]
          Length = 1035

 Score = 1535 bits (3973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 738/985 (74%), Positives = 843/985 (85%), Gaps = 6/985 (0%)

Query: 216  VAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISIS 275
            + I + L+SSP V+YRTADDDI   VPFD+LDDDDPWIRTTDFT SGAIGRCNSYRISI 
Sbjct: 54   LEIGILLSSSPFVYYRTADDDIEETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIP 113

Query: 276  SRHRGKLSKVITYLGERRVQV--DSLSRPITIREEPDFEVPMSDPFFCIHYEEGISFEIM 333
             R+  KL K + YL  RRV V  DS    + +R+EPDF +PMSDPFFCI ++EGI F +M
Sbjct: 114  PRYGAKLKKAMDYLRARRVNVLEDSPKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVM 173

Query: 334  FLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEW 393
            FLVNAVMHKGIINQHQLSD FFDLLR Q +++N+AALKHI SY+ PVFDA +RLKLV +W
Sbjct: 174  FLVNAVMHKGIINQHQLSDKFFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKW 233

Query: 394  LLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFM 453
            LLK+P+L K PK++DDIVEVRRLVITP+KAYCLPPEVELSNRVLR YK+++DRFLRVTFM
Sbjct: 234  LLKNPKLLKSPKELDDIVEVRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFM 293

Query: 454  DEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSS 513
            DEG+QT+NANVL+Y++APIV+ IT NSF QKTRVFKRV++IL+ GFYLCGRK+SFLAFSS
Sbjct: 294  DEGMQTINANVLNYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSS 353

Query: 514  SQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVD 573
            +QLRD SAWFF+ED KTSV  IK WMG+FT++N+AKCAARMGQCFSSTYATVEVP  EV 
Sbjct: 354  NQLRDRSAWFFAEDKKTSVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK 413

Query: 574  PELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAK 633
             ELPDIKRNGY FSDGIGKI PDLAMEVA+KLKL+  P   AYQIRYAGCKGVVACWP+ 
Sbjct: 414  -ELPDIKRNGYDFSDGIGKIVPDLAMEVAEKLKLEGTP--SAYQIRYAGCKGVVACWPSD 470

Query: 634  GDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSM 693
             DGIR+S R SMNKF S HT LEICSWTRFQPGFLNRQI+TLLS LNVPD++FW MQ+SM
Sbjct: 471  NDGIRLSWRPSMNKFLSDHTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESM 530

Query: 694  LSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGL 753
            +SKLNQML D+DVAF+VL A+CAEQGNTAAIMLSAGF PQTEPHL+GMLTCIRAAQ WGL
Sbjct: 531  ISKLNQMLTDTDVAFDVLIASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGL 590

Query: 754  REKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKG 813
            REKARIFVP+GRWLMGCLDELGVLE GQCFIQVS P L NCF KHGSRF+  K L+VIKG
Sbjct: 591  REKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFSAQKNLKVIKG 650

Query: 814  FVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVT 873
             V IAKNPCLHPGD+RILEAVD P L HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVT
Sbjct: 651  IVAIAKNPCLHPGDVRILEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVT 710

Query: 874  WDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHAD 933
            W+E LIPPSK+SWPPM+Y++AEAK L R V   DII+FF K+MVNENLG ICNAHVVHAD
Sbjct: 711  WEETLIPPSKQSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHAD 770

Query: 934  HSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKIL 993
             SEYGALDE C+ LAE AATAVDFPKTGK+VT+P +LKPK+YPDFMGKE +Q+Y+SNKIL
Sbjct: 771  RSEYGALDEACLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKIL 830

Query: 994  GRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGL 1053
            G++YRQ KDAY+ED+S SSE       + +D DL +P S DFI DAW  KCSYDGQLNGL
Sbjct: 831  GKMYRQIKDAYNEDVSESSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGL 890

Query: 1054 LEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELL 1113
            L QYKV REEE+VTGH+WSMPKY SRKQGEL ERLKH+YS+L+KEFRQ+FEKM+SD + L
Sbjct: 891  LGQYKVKREEEVVTGHVWSMPKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQL 950

Query: 1114 SEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSA-RSVVLLSFAWIANDYLARIKI 1172
            ++DEKN L+E+KASAWYQVTYHP WVKKSL+LQ  D      V+LSFAWI  DYLARIKI
Sbjct: 951  TDDEKNRLYEQKASAWYQVTYHPTWVKKSLELQNPDEVFGERVMLSFAWITADYLARIKI 1010

Query: 1173 RCREMANIDTSKPVNYLARYVADRI 1197
            R +   N+D+SKP+N LAR++ DRI
Sbjct: 1011 RRKGTGNVDSSKPINSLARFLVDRI 1035


>gi|357119219|ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
            [Brachypodium distachyon]
          Length = 1208

 Score = 1461 bits (3783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 731/1207 (60%), Positives = 899/1207 (74%), Gaps = 19/1207 (1%)

Query: 3    PEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFY-VT 61
            PE     LV  QVS GGF   V A+EL  +LE E G VWRCR+KTS TP +S+PDF   T
Sbjct: 9    PEPAPGDLVTTQVSLGGFGAGVSASELADFLEYEAGLVWRCRVKTSWTPPDSFPDFLRST 68

Query: 62   NTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLN 121
             +A       Y++V PHAFVHFA P    RA DAAG++EL   G+ L ++   ++  R +
Sbjct: 69   ASASGAPPPPYDRVPPHAFVHFARPEAARRATDAAGKSELLFGGKPLLIASASDSSLRAS 128

Query: 122  QRGRTSTPFKLPDVCVEIGT-LVSRDE----FFVAWRGPASGTDFLVDPFDGTCKFCFTR 176
            +R +   PF+  D  +E+G+ L   DE    F  AWRGPA+G +FLVDPFD  C+  FTR
Sbjct: 129  RR-QNIKPFRFADAVLEVGSFLAPGDEAPEAFLAAWRGPAAGLEFLVDPFDACCRLIFTR 187

Query: 177  DIAFALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDD 236
            D AFA     E  V+ C+ K+EF V ++  V+ Y    C ++LL+L ++PRV+YRTADDD
Sbjct: 188  DTAFAFPGYREVPVMGCDVKLEFSVGDVAAVRVYRN-DC-SLLLRLTAAPRVYYRTADDD 245

Query: 237  ILVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYL-GERRVQ 295
            I V VPFD+LDDDDPWIRTTD T SGAIGRC  YRI ++ R    + + + Y+ G+R + 
Sbjct: 246  IHVSVPFDLLDDDDPWIRTTDITMSGAIGRCGMYRIKVAPRKWIMMDRALAYMKGQRVLI 305

Query: 296  VDSL-----SRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQL 350
            V+S       R + +R+EP+FE PM D FFC+ + EG+ F ++FLVNA++HKGIINQHQL
Sbjct: 306  VESTVWSGPRRGLKVRDEPEFEEPMQDLFFCVQHAEGLKFPVLFLVNALVHKGIINQHQL 365

Query: 351  SDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDI 410
            +  F  LL G+  +VNVAALK  +  K+PVF+A KRL+     +  +P+L +  K  DD 
Sbjct: 366  TPEFLSLLSGRDDDVNVAALKEFWGDKFPVFNARKRLEHAHRRVASNPKLLRSGKVGDDN 425

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            VEVRRLVITPT A CLPP++ELSNRVLR Y ++ADRFLRVTFMDEG+Q++N NVL+++ A
Sbjct: 426  VEVRRLVITPTSASCLPPQIELSNRVLRHYHEVADRFLRVTFMDEGMQSLNNNVLNFYTA 485

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKT 530
            PIV+ +  NSF QKT V+KRV+  L+ GF++CGRK+SFLAFSS+QLRD SAWFF+ED KT
Sbjct: 486  PIVKALRPNSFQQKTAVYKRVKMFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDSKT 545

Query: 531  SVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGI 590
            +V  I+KWMGRFT KN+AK AARMGQCFSSTYATV V P EV+  L D++RN Y FSDGI
Sbjct: 546  TVESIRKWMGRFTSKNVAKHAARMGQCFSSTYATVMVKPDEVNESLEDVERNNYTFSDGI 605

Query: 591  GKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQS 650
            GKITPDLAMEVA+KL+L ++ PP AYQIRYAG KGV+A W    +GIR+SLR SM KF+S
Sbjct: 606  GKITPDLAMEVAEKLQL-MDSPPSAYQIRYAGYKGVIAVWQGNNNGIRLSLRPSMKKFES 664

Query: 651  HHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEV 710
             H+ LE+ SWTRFQPGFLNRQII LLS+LNV D++F  MQ+SML  LN++L+DSDVAFEV
Sbjct: 665  KHSVLEVVSWTRFQPGFLNRQIILLLSSLNVSDDIFSQMQESMLFNLNKILLDSDVAFEV 724

Query: 711  LTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGC 770
            +T +CAEQGNTAA+MLSAGF P TEPHLRGML  IR+AQL  L EK RIFVP GRWLMGC
Sbjct: 725  VTTSCAEQGNTAALMLSAGFGPGTEPHLRGMLLAIRSAQLQDLLEKTRIFVPKGRWLMGC 784

Query: 771  LDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRI 830
            LDELGVLE GQCF+Q S   L  CF KHGSRF+  K   +I G VVIAKNPCLHPGD+RI
Sbjct: 785  LDELGVLEQGQCFVQASAASLDRCFLKHGSRFSANKNTDIIVGTVVIAKNPCLHPGDVRI 844

Query: 831  LEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPME 890
            LEAVD PELHHL DCLVFPQKG+RPH NEASGSDLDGDLYFVTWDE L+PP KKSW PM+
Sbjct: 845  LEAVDVPELHHLVDCLVFPQKGERPHPNEASGSDLDGDLYFVTWDEKLVPPGKKSWNPMD 904

Query: 891  YNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAEL 950
            Y+ AEAK   R V Q DI++FF K+MVNENLG ICNAHVVHAD SEYGA+DE CI LAEL
Sbjct: 905  YSPAEAKQQQRQVSQHDIVDFFLKNMVNENLGPICNAHVVHADLSEYGAMDEKCIRLAEL 964

Query: 951  AATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISV 1010
            AATAVDFPKTGK+VTMP  L+PK+YPDFM KE  +SYKS KILGRLYR  ++A   D+  
Sbjct: 965  AATAVDFPKTGKLVTMPPELRPKIYPDFMLKEESRSYKSEKILGRLYRSIQEASGGDLVS 1024

Query: 1011 SSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHI 1070
                 +N  D+ YDTDLEVP +  F+  AW  KC+Y+GQLN LL Q +V  E ELVTGH+
Sbjct: 1025 EEACTLN--DLLYDTDLEVPGASRFLTSAWECKCNYEGQLNVLLNQSRVCTEAELVTGHV 1082

Query: 1071 WSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWY 1130
            WS+PKYNSRKQGE++ER+K++Y+AL+KE+R VFE +   C+ +++DEKN L+ERKASAWY
Sbjct: 1083 WSLPKYNSRKQGEIRERIKNAYAALQKEYRSVFESLTDQCQ-ITDDEKNLLYERKASAWY 1141

Query: 1131 QVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLA 1190
            QVTYHP+WV+K   + ++D       LSFAWIA DYL RIK+R       +  KPV  LA
Sbjct: 1142 QVTYHPKWVEKLRAMLDEDGEERPARLSFAWIAVDYLVRIKLRSHGGVKAEGRKPVERLA 1201

Query: 1191 RYVADRI 1197
             Y+++RI
Sbjct: 1202 AYISERI 1208


>gi|75330108|sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase SHL2; AltName:
            Full=Protein SHOOTLESS 2
 gi|21328146|dbj|BAC00725.1| putative RNA-dependent RNA polymerase [Oryza sativa Japonica Group]
 gi|157279691|dbj|BAF80151.1| SHOOTLESS2 [Oryza sativa Japonica Group]
          Length = 1218

 Score = 1438 bits (3723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 737/1199 (61%), Positives = 887/1199 (73%), Gaps = 18/1199 (1%)

Query: 10   LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKT 69
            LV  QVS GGFD  V A +L  +LE+EVG VWRCR+KTS TP +SYPDF +         
Sbjct: 27   LVTTQVSLGGFDAGVAAGDLADFLEHEVGLVWRCRVKTSWTPPDSYPDFALPTAPASASA 86

Query: 70   DD----YEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGR 125
                  Y++V PHAFVHFA P    RA D AG T L L G+ L+V+  P++  R+++R  
Sbjct: 87   AAAPPRYDRVPPHAFVHFARPEGARRAADLAGETRLILRGKPLRVASAPDSSLRVSRRSS 146

Query: 126  TSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSS 185
             + PF+ PDV +E+G L S   F  AWRGP +G D  VDPFDG C+  FTRD AF     
Sbjct: 147  IA-PFRFPDVRLEVGALPSPGAFLAAWRGPDAGLDLSVDPFDGCCRLVFTRDTAFTFPGF 205

Query: 186  TEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDM 245
             E A I+C+ K+EF VR++  V+ Y    C ++LL+LA++P V YRTADDD    VPFD+
Sbjct: 206  REVAAIRCDVKLEFPVRDVLEVRLY-RLDC-SLLLRLAAAPLVHYRTADDDFHEPVPFDL 263

Query: 246  LDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS----- 300
            LDDDDPWIRTTD TPSGAIGRC  YRIS S+R   K+ + + Y+ ERRV +         
Sbjct: 264  LDDDDPWIRTTDITPSGAIGRCGVYRISFSARFWPKMDRALDYMRERRVAIVDCGGGWGP 323

Query: 301  -RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLR 359
             R +T+R+E +F  PM D FFC+ + EG+ F ++F+VNA++HKGIINQHQL+  FF LL 
Sbjct: 324  RRGLTVRDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLLG 383

Query: 360  GQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVIT 419
                 VNVAAL+  +  K+PVFDAC RLK     + ++P+L    K  DD  EVRRLVIT
Sbjct: 384  RSEENVNVAALRDFWGDKFPVFDACGRLKKALNRVARNPKLLCS-KVGDDHAEVRRLVIT 442

Query: 420  PTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLN 479
            PT+AYCLPPEVE SNRVLR Y ++ADRFLRVTFMDEG+Q +N NVL+ F APIV+D+  N
Sbjct: 443  PTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSN 502

Query: 480  SFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWM 539
             F QKT V+KRVR +L+ GF++CGRK+SFLAFSS+QLRD SAWFF+ED KT+V  I+KWM
Sbjct: 503  FFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWM 562

Query: 540  GRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAM 599
            GRFT KN+AK AARMGQCFSSTYATV + P EVD    D+  N Y+FSDGIGKITPDLA+
Sbjct: 563  GRFTSKNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNEYIFSDGIGKITPDLAL 622

Query: 600  EVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICS 659
            EVA++L+L  NPP  AYQIR+AG KGV+A W   GDG R+ LR SM KF+S+H  LE+ S
Sbjct: 623  EVAERLQLTDNPP-SAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVS 681

Query: 660  WTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQG 719
            WT+FQPGFLNRQII LLS+LNVPD +FW MQ++MLS LN +L D DVAFEVLT +CA+ G
Sbjct: 682  WTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTTSCADDG 741

Query: 720  NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG 779
            NTAA+MLSAGF P+TEPHL+ ML  IR+AQL  L EKARIFVP GRWLMGCLDELGVLE 
Sbjct: 742  NTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQ 801

Query: 780  GQCFIQVSEPFLGNCFSKHGSRFAET-KKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE 838
            GQCFI+ + P L + F KHGSRF+ T K  +VI G VVIAKNPCLHPGD+RILEAVD PE
Sbjct: 802  GQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRILEAVDVPE 861

Query: 839  LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKT 898
            LHHL DCLVFPQKG+RPH NEASGSDLDGDLYFVTWDE LIPP KKSW PM+Y+  EAK 
Sbjct: 862  LHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQ 921

Query: 899  LTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFP 958
            L R V Q DII+FF K+M++ENLG ICNAHVVHAD SEYGA+DE CI LAELAATAVDFP
Sbjct: 922  LPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFP 981

Query: 959  KTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP 1018
            KTGK+  MP HLKPK+YPDFMGKE  QSYKS KILGRLYR  ++A + D+ VS EV   P
Sbjct: 982  KTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNGDV-VSQEV-CTP 1039

Query: 1019 VDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNS 1078
             D+ YD DLEVP + DF+A AW  KCSYD QL+ LL QY+V  E ELVTGHI  + K +S
Sbjct: 1040 NDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKNSS 1099

Query: 1079 RKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEW 1138
            +KQG++K+RLK +YSALRKEF+  FE + SD   + +DEKN L+E KASAWYQVTYHP+W
Sbjct: 1100 KKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKW 1159

Query: 1139 VKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
            V+KS  +   D       LSFAWI  DYLARIK+RC     ++  KPV  LA Y+++RI
Sbjct: 1160 VEKSRGILGPDGEEIPASLSFAWIPVDYLARIKLRCHGKVRVEGQKPVERLAAYISERI 1218


>gi|242057591|ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
 gi|241929916|gb|EES03061.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
          Length = 1207

 Score = 1428 bits (3697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 711/1193 (59%), Positives = 897/1193 (75%), Gaps = 15/1193 (1%)

Query: 10   LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV-TNTAEVRK 68
            LV  QVS GGFD  VKA +L  +LE + G VWRCR+KTS TP ++YPDF + T T+   +
Sbjct: 19   LVTTQVSLGGFDATVKALDLADFLELKAGLVWRCRVKTSWTPPDAYPDFLLPTVTSAAAQ 78

Query: 69   TDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGRTST 128
               Y++V PHAFVHFA P     A DAAGR+EL L+G+ L+ +   E+      R R+ +
Sbjct: 79   PPQYDRVPPHAFVHFARPEGARAAADAAGRSELILSGKPLRAASAQES-SLRASRRRSVS 137

Query: 129  PFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEH 188
            PF+ P   +E+G L ++D F  AWRGPASG +F VDPFDG+C+  F RD AF ++   E 
Sbjct: 138  PFRFPGSRLEVGDLPAKDAFLAAWRGPASGLEFSVDPFDGSCRLIFARDTAFKVREFRES 197

Query: 189  AVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDD 248
             V++C+ K+EF VR++  V+ +    C ++L++L+++P V+YRTADDDI   VPFD+LDD
Sbjct: 198  VVMRCDVKLEFPVRDVAEVRVF-RLDC-SLLIRLSAAPLVYYRTADDDIHESVPFDLLDD 255

Query: 249  DDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS------RP 302
            DDPWIRTTD TPSGAIGRC +YRI+ S R   K+ + + Y+ +RRV +          R 
Sbjct: 256  DDPWIRTTDITPSGAIGRCGAYRITFSPRFWPKMERALAYMRDRRVPIVDCGGGWGARRG 315

Query: 303  ITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQS 362
            +T+R+EP+F   M D FFC+ + EG+ F ++FLVNA++HKG+INQH L+  FF LL+ + 
Sbjct: 316  LTVRDEPEFGERMQDLFFCVQHSEGLKFPVLFLVNALVHKGVINQHHLTPEFFGLLQRKE 375

Query: 363  REVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTK 422
             +VNVAAL+  +  K+PVFDAC RLK +Q+ + + P+L +  K  DD  EVRRLV+TPTK
Sbjct: 376  DDVNVAALREFWGDKFPVFDACGRLKNLQDRVARYPKLLRN-KIGDDNSEVRRLVVTPTK 434

Query: 423  AYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFS 482
            AYCLPPEVE SNRV+R Y+++ DRFLRVTFMDEG+Q +N+NVL++  A IV+D+  NSF 
Sbjct: 435  AYCLPPEVERSNRVIRHYREVTDRFLRVTFMDEGMQLLNSNVLNFSAAQIVKDLMSNSFL 494

Query: 483  QKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRF 542
             KT V+KR+++ L+ GF++CGRK+SFLAFSS+QLRD SAWFF+ED   +V  I+KWMGRF
Sbjct: 495  HKTTVYKRIKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRMRTVETIRKWMGRF 554

Query: 543  TDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVA 602
            T KN+AK AARMGQCFSSTYATV + P EV+  L +++RNGY+FSDGIGKIT DLA+EVA
Sbjct: 555  TSKNVAKHAARMGQCFSSTYATVVMQPHEVNECLEEVERNGYIFSDGIGKITCDLALEVA 614

Query: 603  QKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTR 662
            QKL+L  NPP  AYQIRYAG KGV+A W  + DGIR+SLR SM+KF+S+H  LE+ SWT+
Sbjct: 615  QKLRLTDNPP-SAYQIRYAGFKGVIAVWEGENDGIRLSLRPSMHKFESNHNVLEVVSWTK 673

Query: 663  FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTA 722
            FQPGFLNRQIITLLS+LNVPD +F  MQ++MLS LN +L D+DVAF+++T +CAEQGNTA
Sbjct: 674  FQPGFLNRQIITLLSSLNVPDAIFSQMQEAMLSNLNNILSDTDVAFDIVTTSCAEQGNTA 733

Query: 723  AIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQC 782
            A+MLSAG +P TEPHL+ ML  IR++QL GL EK RIFVP GRWLMGCLDELG+LE GQC
Sbjct: 734  ALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWLMGCLDELGILEQGQC 793

Query: 783  FIQVSEPFLGNCFSKHGSRFAE-TKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHH 841
            FI+ S P L NC  KHG RF+   K  + I G +V+AKNPCLHPGD+RILEAVD PELHH
Sbjct: 794  FIRASSPSLNNCLVKHGPRFSSANKNAETIVGTIVMAKNPCLHPGDVRILEAVDVPELHH 853

Query: 842  LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR 901
            L DCLVFP+KG+RPH NEASGSDLDGDLYFVTWDENLIPP KKSW PM+Y+  EAK L R
Sbjct: 854  LVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPPGKKSWNPMDYSPTEAKQLPR 913

Query: 902  PVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
             V   DI++FF K+MVNE LG I NAHVVHAD SEYGA+DE CI LAELAATAVDFPKTG
Sbjct: 914  AVSPHDIVDFFLKNMVNEKLGPISNAHVVHADMSEYGAMDEKCIQLAELAATAVDFPKTG 973

Query: 962  KIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDI 1021
            KIV+MP  L+PKLYPDFMGKE   SYKS KILGRLYR  ++A   D+       +N  D+
Sbjct: 974  KIVSMPPSLRPKLYPDFMGKEDAISYKSEKILGRLYRSIQEASSGDLVPEETCTLN--DL 1031

Query: 1022 HYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQ 1081
             YD D+EVP + DF++ AW  KCSY+ QLN LL QY V  E ELVT HIWS+PKY+SRKQ
Sbjct: 1032 PYDADMEVPGATDFLSSAWECKCSYETQLNALLNQYGVRTEAELVTEHIWSLPKYSSRKQ 1091

Query: 1082 GELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKK 1141
            G++KERLK++YSAL K+FR +FE   +D   +S+DEK   +E KASAWYQVTYHP+WV+K
Sbjct: 1092 GDIKERLKNAYSALHKDFRSIFESFVTDQTEISDDEKIRFYEMKASAWYQVTYHPKWVQK 1151

Query: 1142 SLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVA 1194
            S ++ + D       LSFAWI  ++LARIKIRC     +D+ +PV  LA Y++
Sbjct: 1152 SREMLKPDFEDMPARLSFAWIGVEHLARIKIRCHGEVKVDSRRPVERLAAYIS 1204


>gi|312283345|dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila]
          Length = 998

 Score = 1422 bits (3682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 690/992 (69%), Positives = 820/992 (82%), Gaps = 3/992 (0%)

Query: 1   MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
           M  +G  K  V  QVS GGF ++  A EL  YLE+EVG +WRCRLK S TP  SYP+F +
Sbjct: 1   MGSKGNMKNSVVTQVSIGGFGQSTTAKELTDYLEHEVGHIWRCRLKNSWTPPGSYPNFEI 60

Query: 61  TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
            +T+ +R  +DY++VEPHAFVHF  P     A+DAAG+ +L L+G+ LKVSLGPENP+ L
Sbjct: 61  ADTSNIRNFNDYKRVEPHAFVHFVSPESAACAMDAAGQCKLILDGQPLKVSLGPENPYTL 120

Query: 121 NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
           NQR RT+TP KL  + VEIGTLVSRDEF V+WR  A   DFLVDPFD TC+FCFT+  AF
Sbjct: 121 NQRRRTTTPLKLSGISVEIGTLVSRDEFLVSWR--AEKVDFLVDPFDNTCRFCFTKSTAF 178

Query: 181 ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
           +LK +  HAVI C++K+E LVR+I  V+QY       +LLQLASSPRVWYRTADDDI   
Sbjct: 179 SLKDTMRHAVINCDYKLELLVRDIRTVRQYRASDGFVLLLQLASSPRVWYRTADDDIYET 238

Query: 241 VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS 300
            P D+LDDDDPWIRTTDFT +GAIGRC SYR+ +S R+  KL   + YL  +RV+ + + 
Sbjct: 239 CPVDLLDDDDPWIRTTDFTQAGAIGRCLSYRVLLSPRYENKLISALDYLRRQRVKEERVR 298

Query: 301 RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG 360
            P  IR+EP F   +SD FFCIH++EGISFEIMFLVN+V+H+G++NQ QL++ FFDLLR 
Sbjct: 299 WPPRIRDEPGFGEAVSDHFFCIHHKEGISFEIMFLVNSVLHRGVLNQFQLTERFFDLLRN 358

Query: 361 QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP 420
           Q ++VN+A+LKH+ +Y  PVFDA KRLKLVQEW+LK+P+L    ++ DDI E+RRLVITP
Sbjct: 359 QPKDVNIASLKHLCTYNRPVFDAYKRLKLVQEWVLKNPKLLVSHERSDDISEIRRLVITP 418

Query: 421 TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
           T+AYCLPPEVELSNRVLRKYK +++RFLRVTFMDE +QTMN+NVLSYF+APIV+D+T +S
Sbjct: 419 TRAYCLPPEVELSNRVLRKYKAVSERFLRVTFMDESMQTMNSNVLSYFVAPIVKDLTSSS 478

Query: 481 FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540
           FSQKT VFKRV+++L+ GF LCGRK+SFLAFSS+QLRD SAWFFSEDG T V DIK WMG
Sbjct: 479 FSQKTHVFKRVKTLLTDGFKLCGRKYSFLAFSSNQLRDRSAWFFSEDGNTRVSDIKIWMG 538

Query: 541 RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAME 600
           +F DKN+AKCAARMG CFSSTYATV+V P EVD ELP+I+RNGY FSDGIG I+PDLA E
Sbjct: 539 KFKDKNVAKCAARMGLCFSSTYATVDVMPHEVDTELPEIERNGYTFSDGIGTISPDLADE 598

Query: 601 VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSW 660
           V +KLKLDV+  PCAYQIRYAG KGVVA WP+KGDGIR++LR SMNKF S HT LEICSW
Sbjct: 599 VMEKLKLDVHYTPCAYQIRYAGFKGVVARWPSKGDGIRLALRHSMNKFHSKHTILEICSW 658

Query: 661 TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGN 720
           TRFQPGFLNRQII+LLS L VPDE+FW MQ+SML KLN++L D DVAFEVLT +CAEQGN
Sbjct: 659 TRFQPGFLNRQIISLLSVLGVPDEIFWDMQESMLCKLNRILDDIDVAFEVLTTSCAEQGN 718

Query: 721 TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
           TAAIMLSAGF P+ EPHLRGML+ +R AQLWGLREK+RIFV +GRWLMGCLDE G+LE G
Sbjct: 719 TAAIMLSAGFKPKIEPHLRGMLSSVRTAQLWGLREKSRIFVSSGRWLMGCLDEAGILEQG 778

Query: 781 QCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
           QCFIQVS+P + NCFS+HGSRF E+K  +QV+KG+V IAKNPCLHPGD+RILEAVD P+L
Sbjct: 779 QCFIQVSKPSIENCFSRHGSRFKESKADMQVVKGYVAIAKNPCLHPGDVRILEAVDVPQL 838

Query: 840 HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL 899
           H +YDCL+FPQ GDRPHTNEASGSDLDGDLYFV WD+ LIPPS++SW  M+Y+AA+ KTL
Sbjct: 839 HDMYDCLIFPQNGDRPHTNEASGSDLDGDLYFVAWDQKLIPPSRESWHAMQYDAAKEKTL 898

Query: 900 TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
            RPV+ +DII+FF K+M NE+LGTICNAHVVHAD SEYGA+DE C+LLAELAATAVDFPK
Sbjct: 899 GRPVNHQDIIDFFVKNMANEHLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPK 958

Query: 960 TGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNK 991
           TGKIV+MP HLKPKLYPDFMGKE YQ+Y S K
Sbjct: 959 TGKIVSMPFHLKPKLYPDFMGKEDYQTYLSKK 990


>gi|206598331|gb|ACI16098.1| RNA-directed RNA polymerase 6a [Hordeum vulgare]
          Length = 1047

 Score = 1278 bits (3308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1054 (60%), Positives = 800/1054 (75%), Gaps = 32/1054 (3%)

Query: 163  VDPFDGTCKFCFTRDIAFALKSSTEHAVI-KCEFKVEFLVREINLVKQYSEFSCVAILLQ 221
            VDPFDG+C+  F RD AFA K   E AV+ +C+ K+EF VR++  V+ + +  C ++LL+
Sbjct: 1    VDPFDGSCRLVFARDTAFAFKELREAAVVMRCDVKLEFPVRDVAEVRVF-KLDC-SLLLR 58

Query: 222  LASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGK 281
            L++ P V+YRTADDDI   VPFD+LDDDDPWIRTTD TPSGAIGRC  YRI+  +R   K
Sbjct: 59   LSAVPLVYYRTADDDIHDSVPFDLLDDDDPWIRTTDITPSGAIGRCRVYRIAFPARFWSK 118

Query: 282  LSKVITYLGERRVQVDSLS------RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFL 335
            + + + Y+GERRV +          R +T+R+EP+F   M D FFC+ + +G+ F ++FL
Sbjct: 119  MERALAYMGERRVTIVECGGGWGPRRGLTVRDEPEFGERMQDLFFCVQHAQGLKFPVLFL 178

Query: 336  VNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLL 395
            VNA++HKG+++QHQL+  F+ LL+ +  +VNVAALK  +  K+PVFDAC+RLK +Q+ + 
Sbjct: 179  VNALVHKGVVSQHQLTPEFYGLLQRREDDVNVAALKEFWGIKFPVFDACRRLKNLQDRVA 238

Query: 396  KDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDE 455
            ++P+L    K  DD  EVRRLVITPT AYCLPP+VE SNRV+R Y+D ADRFL+VTFMDE
Sbjct: 239  RNPKLLHS-KIGDDHSEVRRLVITPTTAYCLPPQVERSNRVVRHYRDAADRFLKVTFMDE 297

Query: 456  GLQTMNANVLSYFIAPIVRDITLNSFSQ-KTRVFKRVRSILSGGFYLCGRKFSFLAFSSS 514
            G+Q +N+NVL++  A IV+D+  NSF Q KT V+KRV++ L+ GF++CGRK+SFLAFSS+
Sbjct: 298  GMQQLNSNVLNFSAAQIVKDLMSNSFLQHKTTVYKRVKTFLTEGFHMCGRKYSFLAFSSN 357

Query: 515  QLRDCSAWFFSEDGK---TSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTE 571
            QLRD SAWFF+ED      +V  I+KWMGRFT KN+AK  ARMGQCFSSTYATV + P E
Sbjct: 358  QLRDRSAWFFAEDRTDRTRTVESIRKWMGRFTSKNVAKHTARMGQCFSSTYATVVMHPHE 417

Query: 572  VDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP 631
            V+  L D++RNGYVFSDGIGKIT +LA+EVA+KL+L  NPP  AYQIRYAG KGV+A W 
Sbjct: 418  VNECLEDVERNGYVFSDGIGKITQELALEVAKKLQLTDNPP-SAYQIRYAGFKGVIAVWE 476

Query: 632  AKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQD 691
             + DGI++SLR SM+KF+S HT LE+ SWT+FQPGFLNRQIITLLS+LNVPD +F  MQ 
Sbjct: 477  GENDGIQLSLRPSMHKFESPHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFSQMQK 536

Query: 692  SMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLW 751
             MLS LN +L D+DVAF+V+T +CA++GNTAA+MLSAG  P TEPHL+ +L  IR+ QL 
Sbjct: 537  DMLSNLNNILTDTDVAFDVVTTSCADEGNTAALMLSAGILPGTEPHLKALLLAIRSTQLL 596

Query: 752  GLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAE-TKKLQV 810
            GL EK+RIFVP GRWLMGCLDELG+LE GQCFI+ S P L N   KHG RF+      + 
Sbjct: 597  GLLEKSRIFVPKGRWLMGCLDELGILEQGQCFIRASSPVLNNSLVKHGPRFSSANNNAET 656

Query: 811  IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
            I G VV+AKNPCLHPGD+RILEA+D P LHHL DCLVFP+ G+RPH NEASGSDLDGDLY
Sbjct: 657  IVGTVVMAKNPCLHPGDVRILEAIDVPALHHLVDCLVFPKNGERPHANEASGSDLDGDLY 716

Query: 871  FVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVV 930
            FVTWDE LIPP KKSW PM+Y+ AEAK L R V Q DI++FF K+MVNE LG I NAHVV
Sbjct: 717  FVTWDEKLIPPGKKSWNPMDYSPAEAKQLPRQVTQSDIVDFFLKNMVNEKLGPISNAHVV 776

Query: 931  HADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSN 990
            HAD SEYGA+DE CI LAELAA AVDFPKTGKIV+MP  L+PKLYPDFMGK+   SYKS 
Sbjct: 777  HADMSEYGAMDEKCIQLAELAAFAVDFPKTGKIVSMPPALRPKLYPDFMGKDDAISYKSE 836

Query: 991  KILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQL 1050
            KILGRLYR  ++A   D+       +N  D+ YDTD+EVP + DF++ AW  KCSY+ QL
Sbjct: 837  KILGRLYRSIQEASSSDLVPEETCTLN--DLPYDTDMEVPGAADFLSSAWQCKCSYEAQL 894

Query: 1051 NGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDC 1110
            + LL+QY V  E ELVT HIWS+PKYNSRKQG++KERLK++YSALRKE+R +FE +++  
Sbjct: 895  DALLKQYGVRTEAELVTEHIWSLPKYNSRKQGDIKERLKNAYSALRKEYRAIFESVEAPG 954

Query: 1111 E----LLSEDEKNALFERKASAWYQVTYHPEWVKKSL------DLQEQDSARSVVLLSFA 1160
            +     L +DE+N ++E KASAWYQVTYHP+WV++S       D +E   AR    LSFA
Sbjct: 955  QAKAVALDDDERNRVYEMKASAWYQVTYHPKWVERSREALLEPDREEDTPAR----LSFA 1010

Query: 1161 WIANDYLARIKIRCREMANIDTSKPVNYLARYVA 1194
            WI  ++LARIK+RCR    +D  +PV  LA Y++
Sbjct: 1011 WIPVEHLARIKLRCRGGVKVDRRRPVERLAAYMS 1044


>gi|222618586|gb|EEE54718.1| hypothetical protein OsJ_02054 [Oryza sativa Japonica Group]
          Length = 1571

 Score = 1253 bits (3241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 655/1107 (59%), Positives = 796/1107 (71%), Gaps = 49/1107 (4%)

Query: 98   RTELFLNGRALKVSLGPENPFRLNQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPAS 157
            +T     G AL+V+  P++  R+++R   + PF+ PDV +E+G L     F  AWRGP +
Sbjct: 507  KTTAHPEGEALRVASAPDSSLRVSRRSSIA-PFRFPDVRLEVGALPWPGAFLAAWRGPDA 565

Query: 158  GTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVA 217
            G D  VDPFDG C+  FTRD AF      E A I+C+ K+EF VR++  V+ Y    C +
Sbjct: 566  GLDLSVDPFDGCCRLVFTRDTAFTFPGFREVAAIRCDVKLEFPVRDVLEVRLY-RLDC-S 623

Query: 218  ILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSR 277
            +LL+LA++P V YRTADDD    VPFD+LDDDDPWIRTTD TPSGAIGRC  YRIS S+R
Sbjct: 624  LLLRLAAAPLVHYRTADDDFHEPVPFDLLDDDDPWIRTTDITPSGAIGRCGVYRISFSAR 683

Query: 278  HRGKLSKVITYLGERRVQVDSLS------RPITIREEPDFEVPMSDPFFCIHYEEGISFE 331
               K+ + + Y+ ERRV +          R +T+R+E +F  PM D FFC+ + EG+ F 
Sbjct: 684  FWPKMDRALDYMRERRVAIVDCGGGWGPRRGLTVRDELEFGEPMQDVFFCLQHAEGLKFP 743

Query: 332  IMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQ 391
            ++F+VNA++HKGIINQHQL+  FF LL      VNVAAL+  +  K+PVFDAC RLK   
Sbjct: 744  LLFMVNALVHKGIINQHQLTPEFFSLLGRSEENVNVAALRDFWGDKFPVFDACGRLKKAL 803

Query: 392  EWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVT 451
              + ++P+L    K  DD  EVRRLVITPT+AYCLPPEVE SNRVLR Y ++ADRFLRVT
Sbjct: 804  NRVARNPKLLCS-KVGDDHAEVRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVT 862

Query: 452  FMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAF 511
            FMDEG+Q +N NVL+ F APIV+D+  N F QKT V+KRVR +L+ GF++CGRK+SFLAF
Sbjct: 863  FMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAF 922

Query: 512  SSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTE 571
            SS+QLRD SAWFF+ED KT+V  I+KWMGRFT KN+AK AARMGQCFSSTYATV + P E
Sbjct: 923  SSNQLRDKSAWFFAEDRKTTVEAIRKWMGRFTSKNVAKHAARMGQCFSSTYATVTMRPDE 982

Query: 572  VDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP 631
            VD    D+  N Y+FSDGIGKITPDLA+EVA++L+L  N PP AYQIR+AG KGV+A W 
Sbjct: 983  VDESFDDVVHNEYIFSDGIGKITPDLALEVAERLQLTDN-PPSAYQIRFAGFKGVIAVWQ 1041

Query: 632  AKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQD 691
              GDG R+ LR SM KF+S+H  LE+ SWT+FQPGFLNRQII LLS+LNVPD +FW MQ+
Sbjct: 1042 GHGDGTRLFLRPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQE 1101

Query: 692  SMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLW 751
            +MLS LN +L D DVAFEVLT +CA+ GNTAA+MLSAGF P+TEPHL+ ML  IR+AQL 
Sbjct: 1102 TMLSNLNNILSDRDVAFEVLTTSCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQ 1161

Query: 752  GLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET-KKLQV 810
             L EKARIFVP GRWLMGCLDELGVLE GQCFI+ + P L + F KHGSRF+ T K  +V
Sbjct: 1162 DLLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEV 1221

Query: 811  IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
            I G V                                   KG+RPH NEASGSDLDGDLY
Sbjct: 1222 ILGTV-----------------------------------KGERPHANEASGSDLDGDLY 1246

Query: 871  FVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVV 930
            FVTWDE LIPP KKSW PM+Y+  EAK L R V Q DII+FF K+M++ENLG ICNAHVV
Sbjct: 1247 FVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVV 1306

Query: 931  HADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSN 990
            HAD SEYGA+DE CI LAELAATAVDFPKTGK+  MP HLKPK+YPDFMGKE  QSYKS 
Sbjct: 1307 HADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSE 1366

Query: 991  KILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQL 1050
            KILGRLYR  ++A + D+ VS EV   P D+ YD DLEVP + DF+A AW  KCSYD QL
Sbjct: 1367 KILGRLYRSIQEASNGDV-VSQEV-CTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQL 1424

Query: 1051 NGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDC 1110
            + LL QY+V  E ELVTGHI  + K +S+KQG++K+RLK +YSALRKEF+  FE + SD 
Sbjct: 1425 SALLSQYRVRTEAELVTGHITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQ 1484

Query: 1111 ELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARI 1170
              + +DEKN L+E KASAWYQVTYHP+WV+KS  +   D       LSFAWI  DYLARI
Sbjct: 1485 CEIGDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARI 1544

Query: 1171 KIRCREMANIDTSKPVNYLARYVADRI 1197
            K+RC     ++  KPV  LA Y+++RI
Sbjct: 1545 KLRCHGKVRVEGQKPVERLAAYISERI 1571



 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 271/529 (51%), Positives = 339/529 (64%), Gaps = 51/529 (9%)

Query: 10  LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKT 69
           LV  QVS GGFD  V A +L  +LE+EVG VWRCR+KTS TP +SYPDF           
Sbjct: 27  LVTTQVSLGGFDAGVAAGDLADFLEHEVGLVWRCRVKTSWTPPDSYPDF----------- 75

Query: 70  DDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGRTSTP 129
                         A+PT    A  AA         R   ++                 P
Sbjct: 76  --------------ALPTAPASASAAAAPPRSLRVSRRSSIA-----------------P 104

Query: 130 FKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHA 189
           F+ PDV +E+G L S   F  AWRGP +G D  VDPFDG C+  FTRD AF      E A
Sbjct: 105 FRFPDVRLEVGALPSPGAFLAAWRGPDAGLDLSVDPFDGCCRLVFTRDTAFTFPGFREVA 164

Query: 190 VIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDD 249
            I+C+ K+EF VR++  V+ Y    C ++LL+LA++P V YRTADDD    VPFD+LDDD
Sbjct: 165 AIRCDVKLEFPVRDVLEVRLY-RLDC-SLLLRLAAAPLVHYRTADDDFHEPVPFDLLDDD 222

Query: 250 DPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS------RPI 303
           DPWIRTTD TPSGAIGRC  YRIS S+R   K+ + + Y+ ERRV +          R +
Sbjct: 223 DPWIRTTDITPSGAIGRCGVYRISFSARFWPKMDRALDYMRERRVAIVDCGGGWGPRRGL 282

Query: 304 TIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSR 363
           T+R+E +F  PM D FFC+ + EG+ F ++F+VNA++HKGIINQHQL+  FF LL     
Sbjct: 283 TVRDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGRSEE 342

Query: 364 EVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKA 423
            VNVAAL+  +  K+PVFDAC RLK     + ++P+L    K  DD  EVRRLVITPT+A
Sbjct: 343 NVNVAALRDFWGDKFPVFDACGRLKKALNRVARNPKLLCS-KVGDDHAEVRRLVITPTRA 401

Query: 424 YCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQ 483
           YCLPPEVE SNRVLR Y ++ADRFLRVTFMDEG+Q +N NVL+ F APIV+D+  N F Q
Sbjct: 402 YCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQ 461

Query: 484 KTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
           KT V+KRVR +L+ GF++CGRK+SFLAFSS+QLRD SAWFF+ED KT+ 
Sbjct: 462 KTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTA 510


>gi|242080895|ref|XP_002445216.1| hypothetical protein SORBIDRAFT_07g006150 [Sorghum bicolor]
 gi|241941566|gb|EES14711.1| hypothetical protein SORBIDRAFT_07g006150 [Sorghum bicolor]
          Length = 1220

 Score = 1225 bits (3169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/1219 (52%), Positives = 819/1219 (67%), Gaps = 62/1219 (5%)

Query: 11   VDAQVSFGGFD-RNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDF----------- 58
            V  +VS GGFD R     EL  YLE   G VWRCR+KTSCTP  SYPDF           
Sbjct: 9    VTTRVSVGGFDSRFTSPRELADYLEAVAGRVWRCRVKTSCTPPNSYPDFQCLPLLPAANA 68

Query: 59   ------YVTNTAEVRKTDD--------------YEKVEPHAFVHFAMPTYVTRAVDAAGR 98
                  Y +     R  D               Y  V PHAFVHF  P    RA     R
Sbjct: 69   HQPPPHYSSRARRRRAPDGEDDGALAFQAAPTPYNLVPPHAFVHFVHPEAARRA----AR 124

Query: 99   TELFLNGRALKVSLGPENPFRLNQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASG 158
            + + +   +   +           R + + PF+  +  VE+G L + D F V+WR P + 
Sbjct: 125  SGILVRASSSSQNKSSAAVRDRAVRRQNAKPFRFTNARVEVGNLWAPDAFVVSWRCPGNS 184

Query: 159  T-------DFLVDPFDGTCKFCFTRDIAFALKSSTEHAVI-KCEFKVEFLVREINLVKQY 210
                    DF+VDP DG+C+  F+RD AFA  +S E AV+ +C+FKVEF V +I  +  +
Sbjct: 185  GSSASSGLDFVVDPLDGSCRLLFSRDTAFAFPASREAAVVLRCDFKVEFFVDDIAELLVF 244

Query: 211  SEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDD--PWIRTTDFTPSGAIGRCN 268
                  ++LL+L+++P ++YRTA D +   VPFD+LDDDD  PWIRTTD T SGAIGRC 
Sbjct: 245  PTDD--SLLLRLSAAPLLYYRTAADGVHQSVPFDLLDDDDDDPWIRTTDITASGAIGRCW 302

Query: 269  SYRISISSRHRGKLSKVITYLGERRVQV---DSLSRPITIREEPDFEVPMSDPFFCIHYE 325
             YRIS  +    K+   + Y+ E+RV     D  S    + +EP+F  PM D F C+ + 
Sbjct: 303  MYRISFKTWFWPKMKDALAYMKEKRVPAVVCDIGSPGFRVHDEPEFGKPMQDLFLCVQHV 362

Query: 326  EGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACK 385
            E + F ++FLVN ++HKGI+N+HQL+  FF LL+ +  +VNVAAL  +      VFD C 
Sbjct: 363  EELQFSVLFLVNVLVHKGIVNEHQLTSKFFSLLKREEEQVNVAALTELLGENSQVFDVCW 422

Query: 386  RLKLVQEWLLKDPELY----KGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYK 441
            RLK VQ+W+ K+P+L     +G    D    VRRLVITPT+AYC+PP+VE SNRV+R Y 
Sbjct: 423  RLKNVQDWVAKNPKLIHPRSRGKVAGDYNAVVRRLVITPTRAYCMPPQVERSNRVIRHYH 482

Query: 442  DLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYL 501
             +ADRFLRVTFMDEG+Q +N N LS+  APIV+ +    F  KTR+++RV ++++ GF+L
Sbjct: 483  HVADRFLRVTFMDEGMQLLNNNALSFHAAPIVQSMMSKLFQHKTRIYRRVHTLMTKGFHL 542

Query: 502  CGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSST 561
            CGRK+SFLAFSS+Q++D SAWFF+E+G T+   I++WMG+F  +N+AK AARMG CF+S+
Sbjct: 543  CGRKYSFLAFSSNQMKDRSAWFFAEEGTTTAATIREWMGQFPSRNVAKHAARMGLCFTSS 602

Query: 562  YATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYA 621
            YATV   P EV+  L DI+RNGY FSDGIGKITPDLA+EVA +L L    PP AYQIRYA
Sbjct: 603  YATVVTRPNEVNELLEDIERNGYNFSDGIGKITPDLAIEVAARLPLIDRYPPSAYQIRYA 662

Query: 622  GCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNV 681
            G KGV+A WP + DGIR+SLR SM KF+S H+ +E+ SWT+FQP FLNRQII LL +L V
Sbjct: 663  GFKGVIAVWPGQNDGIRLSLRPSMRKFESTHSVIEVVSWTKFQPAFLNRQIIILLMSLGV 722

Query: 682  PDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGM 741
            P+ +FW MQ++ML  L+++L D ++A++V+T +C E+G  A +MLSAGF+P TEPHL+ M
Sbjct: 723  PEAIFWEMQEAMLKNLDRILSDREIAYKVVTNSCPERGTIARLMLSAGFSPATEPHLKAM 782

Query: 742  LTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSR 801
            L  I+++QL GL +K +IFVP GRWLMGCLDELG+LE GQCFIQ S   + N F KHGSR
Sbjct: 783  LLAIKSSQLKGLLKKTKIFVPKGRWLMGCLDELGILEQGQCFIQASSLSINNHFMKHGSR 842

Query: 802  FAETKKLQV-IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEA 860
            F+   K  V I G VV+AKNPCLHPGD+R+LEAVD PELHHL DCLVFP+KG+RPH NEA
Sbjct: 843  FSSANKNAVTIVGTVVVAKNPCLHPGDVRVLEAVDVPELHHLVDCLVFPKKGERPHPNEA 902

Query: 861  SGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNEN 920
            SGSDLDGD+YFVTWD+NL+PP K+SW  M+Y+ AEAK L R V Q D+I+FF K+M +EN
Sbjct: 903  SGSDLDGDVYFVTWDKNLVPPGKRSWKAMDYSPAEAKQLQRRVLQHDLIDFFLKNMASEN 962

Query: 921  LGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMG 980
            +G I NAHVVHAD SEYGA+DE CI LAELAATAVDFPKTGKIV MP  L+P  YPDFM 
Sbjct: 963  IGRISNAHVVHADISEYGAMDEKCIQLAELAATAVDFPKTGKIVRMPPSLRPTKYPDFME 1022

Query: 981  KEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEV-DINPVDIHYDTDLEVPESVDFIADA 1039
            K+   SYKS KI+G+LYR  +  Y   + + S + D  P    YD DLEVP +  F  DA
Sbjct: 1023 KDDAISYKSEKIIGKLYRTVR-YYILGMPLESLIKDGMPA---YDIDLEVPGASHFFLDA 1078

Query: 1040 WNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEF 1099
            W  KC+Y+ +LN LL QY    E ELVTG IWS+     RK+ E  E+  H+Y  L +EF
Sbjct: 1079 WQWKCAYESRLNALLNQYSGCTEAELVTGVIWSLADGRKRKKHEANEKFSHAYPELHQEF 1138

Query: 1100 RQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSF 1159
            R+VFE + +D + +S+++KN ++E KASAWYQVTYHPEW++ S + +     R    LSF
Sbjct: 1139 RRVFENIAADQDRMSDEKKNLVYEMKASAWYQVTYHPEWIRFSREKEPHGEERP-ARLSF 1197

Query: 1160 AWIANDYLARIKIRCREMA 1178
             WIA DYLA IK+RCR  A
Sbjct: 1198 PWIAIDYLACIKMRCRGQA 1216


>gi|242093792|ref|XP_002437386.1| hypothetical protein SORBIDRAFT_10g025950 [Sorghum bicolor]
 gi|241915609|gb|EER88753.1| hypothetical protein SORBIDRAFT_10g025950 [Sorghum bicolor]
          Length = 1239

 Score = 1175 bits (3040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/1197 (51%), Positives = 789/1197 (65%), Gaps = 59/1197 (4%)

Query: 19   GFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTN--TAEVRKTDD---YE 73
            GFD  + A  L   LE+  G VWRCR+KTS TP +SYPDF++     A V   D    + 
Sbjct: 66   GFDAGLSARGLADDLEHVAGTVWRCRVKTSITPPKSYPDFHLPAILAAAVLHPDGPSRHG 125

Query: 74   KVEPHAFVHFAMPTYVTRAVD-----AAGRTELFLNGRALKVSLGPENPFRLNQRGRTST 128
            +V PHAFVHF        A D      + +    L+GRA     G  +  R         
Sbjct: 126  RVAPHAFVHFEQLKAANHAGDFFKMRISAQNTYLLHGRAACPRDGGTDMRR--------- 176

Query: 129  PFKLPDVCVEIGTLVSRDEFFVAWRG---PASGTDFLVDPFDGTCKFCFTRDIAFALKSS 185
            P   PD CVE G +V  D FFVAWRG    AS  DF+VDP  G C+  F+RD AF     
Sbjct: 177  PMLFPDSCVEFGDIVPPDTFFVAWRGTDHSASAVDFIVDPSVGCCRLLFSRDTAFTFPDL 236

Query: 186  TEH--AVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPF 243
                  V+ C+ K+EF V  +  V  +      +++L+L+++P V+YRTA DD+   VPF
Sbjct: 237  CRRPTVVLCCDIKLEFSVSNVAEVLVFEADD--SLILRLSAAPLVYYRTAGDDVQDRVPF 294

Query: 244  DMLD-DDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVD---SL 299
             ++D DDDPWIRTTD TPSGAIGRC++YR+S  +     +   + Y+  + V VD   S 
Sbjct: 295  HLIDTDDDPWIRTTDVTPSGAIGRCSAYRVSFGAMFWPTMRTALKYMERQGVPVDVRDSR 354

Query: 300  SRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLR 359
                T+ EEPDF  PM   FF +  +E + F  ++LVN ++H  I+N HQL+  FF LLR
Sbjct: 355  WLGFTVLEEPDFGRPMQHVFFSLRQDEDLWFPELYLVNVLIHNRIVNLHQLTSEFFSLLR 414

Query: 360  GQSREVNVAALKHIYSYKWPVF-DACKRLKLVQEWLLKDPEL--YKGPKQIDDI-VEVRR 415
                +VNVAAL  ++  K  V  + C RLK  Q+   K+  L  +   +++ D   EVRR
Sbjct: 415  RAHEDVNVAALTELFGAKLQVCSNPCSRLKNAQDRATKNLNLLFHGSSRKLGDFNAEVRR 474

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475
            L+ITPT+ YC+PP++E SNRV R Y  L+DRFLRV F+DEG+  +NAN LS  + P+V+D
Sbjct: 475  LIITPTRTYCMPPQLERSNRVTRHYHQLSDRFLRVAFVDEGMLPLNANALSLQVVPLVKD 534

Query: 476  ITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDI 535
            +  +   Q T V++RV++IL+ GF +CGRK+SFLAFS+SQL+  SAWFF+EDG T+V  +
Sbjct: 535  LMSSPTQQMTTVYRRVQTILTEGFTMCGRKYSFLAFSTSQLKQKSAWFFAEDGTTTVASM 594

Query: 536  KKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITP 595
            K+WMG+F  +N AK AARMG CF+S+YATV + P EVD  L D+  NGY FSDGIG IT 
Sbjct: 595  KEWMGQFPIRNPAKHAARMGLCFTSSYATVTMQPCEVDEYLEDVIHNGYNFSDGIGMITQ 654

Query: 596  DLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTL 655
            DLA+EVA++L+L     P  YQIRYAG KGVVA    + DG+RMSLR SM KF+S H+ L
Sbjct: 655  DLALEVAKRLQLTDIYAPSTYQIRYAGFKGVVAVSTGQNDGMRMSLRPSMRKFESAHSVL 714

Query: 656  EICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAAC 715
            E+ SWT+FQP FLNRQIITLL++L VPD +FW MQ++ML  L ++L D++VA+EV+T +C
Sbjct: 715  EVLSWTKFQPSFLNRQIITLLTSLGVPDAVFWQMQEAMLGNLKRILSDNNVAYEVVTNSC 774

Query: 716  AEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELG 775
             E G+TA +MLSAGF P TEPHLR ML  I A+Q+ GL +K RIFVP GRWLMGCLDELG
Sbjct: 775  PEHGSTAGLMLSAGFAPATEPHLRAMLLAICASQMQGLLDKTRIFVPKGRWLMGCLDELG 834

Query: 776  VLEGGQCFIQVSEPFLGNCFSKHGSRFAETKK--LQVIKGFVVIAKNPCLHPGDIRILEA 833
            +LE GQCFIQVS P L NC+   GS F    K   ++I G VV+AKNPCLHPGD+RILEA
Sbjct: 835  ILEQGQCFIQVSTPSLNNCYVNRGSIFPSEYKNNAEIIVGTVVMAKNPCLHPGDVRILEA 894

Query: 834  VDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNA 893
            VD PELHHL DCLVFPQKG+RPH NEASGSDLDGD+YFVTWDENL+PP ++S  PM+Y  
Sbjct: 895  VDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDIYFVTWDENLVPPGRQSGTPMDYFP 954

Query: 894  AEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAAT 953
            A+ K L R V Q DII+F+ + MVN+NLG ICNAHVVHAD S+ GA+D  CI LA+LAA 
Sbjct: 955  AKTKQLPREVHQSDIIDFYLESMVNDNLGRICNAHVVHADRSDDGAMDPKCIQLAKLAAI 1014

Query: 954  AVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYR-----QSKDAYDEDI 1008
            AVD  KTG+IV MP  L PK YPDFMGK    SYKS KILGRLYR        D   +  
Sbjct: 1015 AVDSAKTGEIVRMPPSLSPKEYPDFMGKGDAISYKSKKILGRLYRSILRENGDDFVSQGT 1074

Query: 1009 SVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTG 1068
             +S+E         YD DLEVP ++ F+ DAW  KC Y+ QLN LL QY +  E ELVTG
Sbjct: 1075 CISNETP-------YDIDLEVPGALSFLEDAWQCKCLYEAQLNTLLSQYGLRSEAELVTG 1127

Query: 1069 HIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMD-SDCELLSEDEKNALFERKAS 1127
             IW +  YN + Q +LKER+ ++YS L +EFR +FE +D S C     D KN  +E KAS
Sbjct: 1128 EIWPLVGYN-KYQYQLKERINYAYSKLHQEFRSIFESIDISYC-----DNKNLAYEMKAS 1181

Query: 1128 AWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSK 1184
            AWYQVTYHPE+++    L+E D  ++   LSFAWIA DYLA+IK +C     ++  +
Sbjct: 1182 AWYQVTYHPEFIR----LREPDDEKTPARLSFAWIAVDYLAQIKKKCHGEMKVEEGR 1234


>gi|242093794|ref|XP_002437387.1| hypothetical protein SORBIDRAFT_10g025970 [Sorghum bicolor]
 gi|241915610|gb|EER88754.1| hypothetical protein SORBIDRAFT_10g025970 [Sorghum bicolor]
          Length = 1251

 Score = 1166 bits (3016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/1199 (51%), Positives = 798/1199 (66%), Gaps = 64/1199 (5%)

Query: 14   QVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVT-------NTAEV 66
            +V   GFD  + A  L   LE+  G VWRCR+KTS TP ESYPDF +        + A  
Sbjct: 67   RVVLTGFDAGLSARGLADDLEHLAGTVWRCRVKTSVTPPESYPDFQLPVHPADDDDAAVF 126

Query: 67   RKTDDYEK---VEPHAFVHFAMPTYVTRAVD-----AAGRTELFLNGRALKVSLGPENPF 118
               D+  +   V PHAFVHF  P    RA          ++   L+GRA +    P +  
Sbjct: 127  HHQDEPSRHGVVAPHAFVHFEHPNAADRAGHFFRKRVPAQSSYLLHGRAAR---PPRDGG 183

Query: 119  RLNQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRG------PASGTDFLVDPFDGTCKF 172
              + RGR   P   PD  VE+G +V+   F VAWRG       AS  DF+VDP  G C+ 
Sbjct: 184  TDDTRGR---PMLFPDSHVEVGDVVAPGTFLVAWRGTDDDSASASALDFVVDPSAGCCRL 240

Query: 173  CFTRDIAFALKSSTEHAVIK--CEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWY 230
             F RD AF          +   C+ KVEF V ++  V  +      ++LL+L+++P V+Y
Sbjct: 241  LFARDTAFTFPDFHRRPAVLLCCDVKVEFSVADVAEVLAFEADD--SLLLRLSAAPLVYY 298

Query: 231  RTADDDILVLVPFDMLD-DDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYL 289
            RTA DD+   VPF  +D DDDPWIRTTD TPSGAIGRC++YR+S ++R    +   + Y+
Sbjct: 299  RTAGDDVHDRVPFHQIDVDDDPWIRTTDVTPSGAIGRCSAYRVSFAARFWPTMRAALEYM 358

Query: 290  GERRVQVD---SLSRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIIN 346
             ++ V VD   S  R +T+ EEPDF  PM D FF + ++EG+ F  ++LVN ++H GI+N
Sbjct: 359  KKQGVPVDVCDSRCRGVTVLEEPDFGRPMLDVFFSLRHDEGLRFPELYLVNVLIHNGIVN 418

Query: 347  QHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVF--DACKRLKLVQEWLLKDPELYKGP 404
             HQL+  FF LLR    +VNVAAL  ++  K      D C RLK  Q    K+  L    
Sbjct: 419  PHQLTSEFFSLLRRAQEDVNVAALTELFGTKLHQVCNDPCSRLKNAQVRAAKNLNLLSNS 478

Query: 405  --KQIDD--IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTM 460
              ++  D  + EVRRL+ITPT+AYC+PP+VE SNRV R Y+ ++DRFLRVTF+DEG+  +
Sbjct: 479  SSRKFGDYNVFEVRRLIITPTRAYCMPPQVERSNRVTRHYRQVSDRFLRVTFVDEGMLPL 538

Query: 461  NANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCS 520
            N++ LS  + P V+D   +S  Q T V++RV++IL+ GF +CGRK+SFLAFS+SQL+  S
Sbjct: 539  NSHALSLHVVPFVKDSMSSSSQQMTTVYRRVQTILTEGFTMCGRKYSFLAFSTSQLKQKS 598

Query: 521  AWFFSEDGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK 580
            AWFF+EDG T+V  +K+WMG+F  +N AK AARMG CF+S+YATV + P EV+  L D+ 
Sbjct: 599  AWFFAEDGTTTVASMKEWMGQFPIRNPAKHAARMGLCFTSSYATVTMQPCEVNEYLEDVI 658

Query: 581  RNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRM- 639
             NGY FSDGIG IT DLA+EVA++L L     P AYQIRYAG KGVVA  P   DG+RM 
Sbjct: 659  HNGYNFSDGIGIITQDLALEVAKRLPLTDIYAPSAYQIRYAGFKGVVAVSPRHNDGMRMM 718

Query: 640  SLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQ 699
            SLR SM KF+S H  +E+ SWT+FQP FLNRQIITLL++L VPD++FW MQ++ML  L +
Sbjct: 719  SLRPSMRKFESVHPVIEVVSWTKFQPAFLNRQIITLLTSLGVPDDVFWQMQEAMLGNLKR 778

Query: 700  MLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARI 759
            +L ++DVA++++T++C E G+TA +ML+AGF P TEPHLR ML  I A+Q+ GL +K  I
Sbjct: 779  ILSNTDVAYKIVTSSCPEHGSTAGLMLTAGFAPATEPHLRAMLLAICASQMKGLLDKTWI 838

Query: 760  FVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKK--LQVIKGFVVI 817
            FVP GRWLMGCLDELG+LE GQCFI+VS P L N +   GS      K   ++I G VV+
Sbjct: 839  FVPKGRWLMGCLDELGILEQGQCFIRVSTPSLNNHYMNRGSISPSEYKNNAEIIVGTVVM 898

Query: 818  AKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEN 877
            AKNPCLHPGD+RILEAVD PELHHL DCLVFP+KG+RPH+NEASGSDLDGD+YFVTWDEN
Sbjct: 899  AKNPCLHPGDVRILEAVDVPELHHLVDCLVFPKKGERPHSNEASGSDLDGDVYFVTWDEN 958

Query: 878  LIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEY 937
            L+PP +KS  PM+Y+ +++K L R V Q+D I+F+ + MVN+NLG ICNAHV HAD S+ 
Sbjct: 959  LVPPGRKSCTPMDYSPSKSKQLPREVHQQDTIDFYLESMVNDNLGRICNAHVAHADRSDD 1018

Query: 938  GALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLY 997
            GA+D  C+ LAELAA AVD  KTG+IV MP  L PK YPDFMGKE   SYKS KILGRLY
Sbjct: 1019 GAMDTKCVELAELAAIAVDSAKTGEIVKMPPSLSPKEYPDFMGKEDAISYKSKKILGRLY 1078

Query: 998  R-----QSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNG 1052
            R      S D   +   +S+E         YDTDLEVP ++ F+ DAW  KC Y+ QLN 
Sbjct: 1079 RSILMENSGDLLSQVTCISNEN-------QYDTDLEVPGALSFLEDAWKCKCLYEAQLNT 1131

Query: 1053 LLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCEL 1112
            LL Q+ V+ E ELVTG IWS+  YN + Q +LKERL ++YS L +EFR +FE +D    +
Sbjct: 1132 LLNQFGVHSEAELVTGEIWSLVGYNKKYQYQLKERLNYAYSKLHQEFRSIFESID----V 1187

Query: 1113 LSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
               D KN  +E KASAWYQVTYHPE+++    L+E D  ++   LSFAWI  DYLA+IK
Sbjct: 1188 SYGDSKNLAYEMKASAWYQVTYHPEFIR----LRELDDEKTPARLSFAWIPVDYLAQIK 1242


>gi|413954935|gb|AFW87584.1| hypothetical protein ZEAMMB73_985632 [Zea mays]
          Length = 1241

 Score = 1095 bits (2833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/1196 (49%), Positives = 764/1196 (63%), Gaps = 64/1196 (5%)

Query: 19   GFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV---TNTAEVRKTDDYE-- 73
            GFD  + A  L   LE   G VWRCR+KTS TP ESYPDF +   T  A V   D  E  
Sbjct: 65   GFDAGLSARGLADELERVAGTVWRCRIKTSVTPPESYPDFQLSVHTAAAAVFHQDQDEPP 124

Query: 74   ---KVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVS---LGPENPFRLNQRGRTS 127
               +V PHAFVHF       RA D       F   R L  S   +      R +     +
Sbjct: 125  RDGRVAPHAFVHFEHRNAADRAGD-------FFTTRILAQSRHLVHGHAARRRDGVTDAA 177

Query: 128  TPFKLPDVCVEIGTLVSRDEFFVAWRG---PASGTDFLVDPFDGTCKFCFTRDIAFALKS 184
             P   PD  +EIG +V+ D F VAWRG    AS  DF+VDP  G+C+  F R  AF    
Sbjct: 178  KPMLFPDSRIEIGDVVAPDTFLVAWRGTDDSASALDFVVDPSGGSCRLLFARYTAFTCPD 237

Query: 185  STE-HAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPF 243
                 A++ C+ K+EF +  +     +      +++L+L+++P V+YRT+ DD+   VPF
Sbjct: 238  RRRPAALLCCDVKLEFALAHVTEALAFQADD--SLVLRLSAAPLVYYRTSGDDVHGRVPF 295

Query: 244  DMLD-DDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQV---DSL 299
             ++D DDDPWIRTTD T SGAIGRC +YR+S + +    +   +  +  + V V   D  
Sbjct: 296  QLVDADDDPWIRTTDVTQSGAIGRCLAYRVSFAVQFWPTMRVALECMQRQGVPVHVRDRR 355

Query: 300  SRPITIREEPDFEVPMSDPFFCIHYEE----GISFEIMFLVNAVMHKGIINQHQLSDSFF 355
             R  T+ EE     PM D FF   +E     G+ F  ++LVN +MH G++N HQ++  FF
Sbjct: 356  CRGFTVLEEAGLVQPMRDAFFSPRHEHDDDAGLRFPELYLVNVLMHNGVVNPHQMTPEFF 415

Query: 356  DLLRGQSREVNVAALKHIYSYKWPVFD-ACKRLKLVQEWLLKDPELY-------KGPKQI 407
             LL     +VNVAAL  ++  K  V D  C RLK  Q+   K+ +L        +  K  
Sbjct: 416  GLLMRTREDVNVAALTELFGAKLGVCDNPCWRLKNAQDRAAKNLDLVCRSSSSSRRRKAS 475

Query: 408  DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSY 467
            D   EVRRL++TPT+ YC+PP+VE SNRV+R Y +L+DRFLRVTF DEG+  +N N L+ 
Sbjct: 476  DCDAEVRRLIVTPTREYCIPPQVERSNRVIRHYHELSDRFLRVTFTDEGMLPLNPNALTL 535

Query: 468  FIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSED 527
               P     T ++  Q T V++RV++ L+ G  +CGR++SFLAFS+SQL+  SAWFF+ED
Sbjct: 536  RAVPSTS--TPSTSRQMTSVYRRVQTALTEGLIMCGRRYSFLAFSASQLKQKSAWFFAED 593

Query: 528  GKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFS 587
            G T+V  IK+WMG+F  +N AK AARMG CF+S+YATV + P EVD +L D+ RNGY FS
Sbjct: 594  GATTVAGIKEWMGQFPIRNPAKHAARMGLCFTSSYATVTMQPGEVDEDLEDVTRNGYNFS 653

Query: 588  DGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGI------RMSL 641
            DGIG IT DLA+EVA+ L L     P AYQIRYAG KGVVA WP  G G       RMSL
Sbjct: 654  DGIGVITEDLALEVAEMLPLADRFAPSAYQIRYAGFKGVVAVWP-PGPGQEDRGTRRMSL 712

Query: 642  RESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
            R SM KF+S HT LE+ SWT+FQP FLNRQIITLL+TL VPD+ FW +Q++ML KL ++L
Sbjct: 713  RPSMRKFESTHTVLEVVSWTKFQPAFLNRQIITLLTTLGVPDDAFWQLQEAMLGKLRRVL 772

Query: 702  VDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761
             DSDVA+EV+  +C EQG+TA +ML AGF P TEPHLR ML  I  +Q+ GL  K  IFV
Sbjct: 773  SDSDVAYEVVINSCPEQGSTAGLMLGAGFAPATEPHLRAMLLAICTSQMQGLLNKTWIFV 832

Query: 762  PAGRWLMGCLDELGVLEGGQCFIQVSEPFLGN-CFSKHG---SRFAETKKLQVIKGFVVI 817
            P GRWLMGCLDE G+LE GQCF++VS P +G+ C ++     S +      QVI G VV+
Sbjct: 833  PKGRWLMGCLDEFGILEQGQCFLRVSTPSVGSRCVNRSPIFPSEYKGDADAQVITGTVVM 892

Query: 818  AKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEN 877
            AKNPCLHPGD+RILEAVD P+L+HL DC VFP+KG+RPH +EASGSDLDGD+YFVTWDE+
Sbjct: 893  AKNPCLHPGDVRILEAVDVPDLYHLVDCFVFPKKGERPHADEASGSDLDGDVYFVTWDES 952

Query: 878  LIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEY 937
            L+PP +KS  PM+Y+ A+ K L R V Q+D I+F+ + MV +NLG ICNAH  HAD S+ 
Sbjct: 953  LVPPGRKSCTPMDYSPAKTKQLPRDVHQQDTIDFYLESMVYDNLGRICNAHAAHADRSDD 1012

Query: 938  GALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLY 997
            GA+D  CI LA LA+ AVD  KTG+IV MP  L PK YPDFMGKE   SY+S KILGRLY
Sbjct: 1013 GAMDPKCIELARLASIAVDSAKTGEIVRMPPALSPKEYPDFMGKEDAISYRSEKILGRLY 1072

Query: 998  RQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQY 1057
            R      D D  +S +  I+  +I YD DLEV  + DF+ DAW  +C Y+ +LN LL+QY
Sbjct: 1073 RSVLGENDGDF-LSRDACISD-EIRYDADLEVLGASDFLQDAWRCRCLYEARLNALLDQY 1130

Query: 1058 KVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDE 1117
             V  E ELVTG IWS+   + +   +LKER+ ++YS L +EFR +FE +D+     S D 
Sbjct: 1131 DVCSEAELVTGEIWSLAGCSKKYHHQLKERINYAYSNLHQEFRSIFESIDA-----STDN 1185

Query: 1118 KNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIR 1173
            KN  +E KASAWYQVTYHPE ++      E    R    LSFAWIA DYLA+IK++
Sbjct: 1186 KNLAYEMKASAWYQVTYHPEIIRSREPGDEDAPTR----LSFAWIAVDYLAQIKMK 1237


>gi|413955011|gb|AFW87660.1| hypothetical protein ZEAMMB73_096378 [Zea mays]
          Length = 1901

 Score = 1086 bits (2808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/1195 (49%), Positives = 764/1195 (63%), Gaps = 65/1195 (5%)

Query: 19   GFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVT----NTAEVRKTDDYEK 74
            GFD  + A  L   LE   G VWRCR+KTS TP ESYPDF ++      A V   D+  +
Sbjct: 728  GFDAGLSARGLADELERLAGTVWRCRIKTSVTPPESYPDFQLSVHAAAAAAVFHQDEPPR 787

Query: 75   ---VEPHAFVHFAMPTYVTRAVD-----AAGRTELFLNGRALKVSLGPENPFRLNQRGRT 126
               V PHAFVHF       RA D        ++   L+G A +   G  +          
Sbjct: 788  DGRVAPHAFVHFEHRNAADRAGDFFTTRILAQSRHLLHGHAARRRDGVTD---------A 838

Query: 127  STPFKLPDVCVEIGTLVSRDEFFVAWRG---PASGTDFLVDPFDGTCKFCFTRDIAFALK 183
            + P   PD  +EIG +V+ D F VAWRG    AS  DF+VDP  G+C+  F R  AF   
Sbjct: 839  AKPMLFPDSRIEIGDVVAPDTFLVAWRGTDDSASALDFVVDPSGGSCRLLFARYTAFTCP 898

Query: 184  SSTE-HAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVP 242
                  A++ C+ K+EF +  +     +      +++L+L+++P V+YRT+ DD+   VP
Sbjct: 899  DRRRPAALLCCDVKLEFALAHVAEALAFQADD--SLVLRLSAAPLVYYRTSGDDVHGRVP 956

Query: 243  FDMLD-DDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQV---DS 298
            F ++D DDDPWIRTTD T SGAIGRC +YR+S + +    +   +  +  + V V   D 
Sbjct: 957  FQLVDADDDPWIRTTDVTRSGAIGRCLAYRVSFAVQFWPTMRVALECMQRQGVPVHVRDR 1016

Query: 299  LSRPITIREEPDFEVPMSDPFFCIHYEE----GISFEIMFLVNAVMHKGIINQHQLSDSF 354
              +  T+ EE     PM D FF   +++    G+ F  ++LVN +MH G++N HQ++  F
Sbjct: 1017 RCQGFTVLEEAGLVQPMRDAFFSPRHDDDAGAGLRFPELYLVNVLMHNGVVNPHQMTPEF 1076

Query: 355  FDLLRGQSREVNVAALKHIYSYKWPVFD-ACKRLKLVQEWLLKDPELY-----KGPKQID 408
            F LL     +VNVAAL  ++  K  V D  C RLK  Q+   K+ +L         K  D
Sbjct: 1077 FGLLMRTREDVNVAALTELFGAKLGVCDNPCWRLKNAQDKAAKNLDLVCRSSSSRRKASD 1136

Query: 409  DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYF 468
               EVRRL++TPT+ YC+PP+VE SNRV+R Y +L+DRFLRVTF DEG+  +N N L+  
Sbjct: 1137 CDAEVRRLIVTPTREYCMPPQVERSNRVIRHYHELSDRFLRVTFTDEGMLPLNPNALTLR 1196

Query: 469  IAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDG 528
              P     T ++  Q T V++RV++ L+ G  +CGR++SFLAFS+SQL+  SAWFF+EDG
Sbjct: 1197 AVPSTS--TPSTSRQMTSVYRRVQTALTEGLIMCGRRYSFLAFSASQLKQKSAWFFAEDG 1254

Query: 529  KTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSD 588
             T+V  IK+WMG+F  +N AK AARMG CF+S+YATV + P EVD +L D+ RNGY FSD
Sbjct: 1255 ATTVAGIKEWMGQFPIRNPAKHAARMGLCFTSSYATVTMQPGEVDEDLEDVTRNGYNFSD 1314

Query: 589  GIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGI------RMSLR 642
            GIG IT DLA+EVA+ L L     P AYQIRYAG KGVVA  P  G G       RMSLR
Sbjct: 1315 GIGVITEDLALEVAEMLPLADRFAPSAYQIRYAGFKGVVAVSP-PGPGQEDRGTRRMSLR 1373

Query: 643  ESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLV 702
             SM KF+S H  LE+ SWT+FQP FLNRQIITLL+TL VPD+ FW +Q++ML KL ++L 
Sbjct: 1374 PSMRKFESTHNVLEVVSWTKFQPAFLNRQIITLLTTLGVPDDSFWQLQEAMLGKLRRVLS 1433

Query: 703  DSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVP 762
            DSDVA+EV+T +C EQG+TA +ML AGF P TEPHLR ML  I  +Q+ GL  K  IFVP
Sbjct: 1434 DSDVAYEVVTNSCPEQGSTAGLMLGAGFAPATEPHLRAMLLAICTSQMQGLLNKTWIFVP 1493

Query: 763  AGRWLMGCLDELGVLEGGQCFIQVSEPFLGN-CFSKHG---SRFAETKKLQVIKGFVVIA 818
             GRWLMGCLDE G+LE GQCF++VS P LG+ C ++     S +      QVI G VV+A
Sbjct: 1494 KGRWLMGCLDEFGILEQGQCFLRVSTPSLGSRCVNRSPIFPSEYKGDANAQVITGTVVMA 1553

Query: 819  KNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENL 878
            KNPCLHPGD+RILEAVD P+L+HL DC VFP+KG+RPH +EASGSDLDGD+YFVTWDE+L
Sbjct: 1554 KNPCLHPGDVRILEAVDVPDLYHLVDCFVFPKKGERPHADEASGSDLDGDVYFVTWDESL 1613

Query: 879  IPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYG 938
            +PP +KS  PM+Y+ A+ K L   V Q+D I+F+ + MV +NLG ICNAH  HAD S+ G
Sbjct: 1614 VPPGRKSCTPMDYSPAKTKQLPHDVHQQDTIDFYLESMVYDNLGRICNAHAAHADRSDDG 1673

Query: 939  ALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYR 998
            A+D  CI LA LA+ AVD  KTG+IV MP  L PK YPDFMGKE   SY+S KILGRLYR
Sbjct: 1674 AMDPKCIELARLASIAVDSAKTGEIVRMPPALSPKEYPDFMGKEDAISYRSEKILGRLYR 1733

Query: 999  QSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYK 1058
                  D D  +S    I+  +I YD DLEVP + DF+ DAW  +C Y+ +LN LL+QY 
Sbjct: 1734 SVLGENDGDF-LSRGACISD-EIRYDADLEVPGASDFLQDAWRCRCLYEARLNALLDQYN 1791

Query: 1059 VNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEK 1118
            V  E ELVTG IWS+   + + Q +LKER+ ++YS + +EFR +FE + +     S D K
Sbjct: 1792 VRSEAELVTGEIWSLAGCSKKYQHQLKERINYAYSKVHQEFRIIFESIGA-----STDNK 1846

Query: 1119 NALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIR 1173
            N  +E KASAWYQVTYHPE ++      E    R    LSFAWIA DYLA+IK++
Sbjct: 1847 NLAYEMKASAWYQVTYHPEIIRSREPGDEDAPTR----LSFAWIAVDYLAQIKMK 1897



 Score =  427 bits (1099), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 258/624 (41%), Positives = 348/624 (55%), Gaps = 72/624 (11%)

Query: 19  GFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVT----NTAEVRKTDDYEK 74
           GFD  + A  L   LE   G VWRCR+KTS TP ESYPDF ++      A V   D+  +
Sbjct: 79  GFDAGLSARGLADELERLAGTVWRCRIKTSVTPPESYPDFQLSVHAAAAAAVFHQDEPPR 138

Query: 75  ---VEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVS---LGPENPFRLNQRGRTST 128
              V PHAFVHF       RA D       F   R L  S   L      R +     + 
Sbjct: 139 DGRVAPHAFVHFEHRNAADRAGD-------FFTTRILAQSRHMLHGHAARRRDGVTDAAK 191

Query: 129 PFKLPDVCVEIGTLVSRDEFFVAWRG---PASGTDFLVDPFDGTCKFCFTRDIAFALKSS 185
           P   P+ C+EIG +V+ D F VAWRG    AS  DF+VDP  G+C+  F R  AF     
Sbjct: 192 PMLFPNSCIEIGDVVAPDTFLVAWRGTDDSASALDFVVDPSGGSCRLLFARYTAFTCPDR 251

Query: 186 TE-HAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFD 244
               A++ C+ K+EF +  +     +      +++L+L+++P V+YRT+ DD+   VPF 
Sbjct: 252 RRPAALLCCDVKLEFALAHVAEALAFQADD--SLVLRLSAAPLVYYRTSGDDVHGRVPFQ 309

Query: 245 MLD-DDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQV---DSLS 300
           ++D DDDPWIRTTD T SGAIGRC +YR+S + +    +   +  +  + V V   D   
Sbjct: 310 LVDADDDPWIRTTDVTRSGAIGRCLAYRVSFAVQFWPTMRVALECMQRQGVPVHVRDRRC 369

Query: 301 RPITIREEPDFEVPMSDPFFCIHYEE----GISFEIMFLVNAVMHKGIINQHQLSDSFFD 356
           R  T+ EE     PM D FF   +++    G+ F +++LVN +MH G++N HQ++  FF 
Sbjct: 370 RGFTVLEEAGLVQPMRDAFFSPRHDDDAGAGLRFPVLYLVNVLMHNGVVNPHQMTPEFFG 429

Query: 357 LLRGQSREVNVAALKHIYSYKWPVFD-ACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRR 415
           LL     +VNVAAL  ++  K  V D  C        W                      
Sbjct: 430 LLMRTREDVNVAALTELFGAKLGVCDNPC--------W---------------------- 459

Query: 416 LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475
                 + YC+P  VE SNRV+R Y +L+DRFLRVTF DEG+  +N N L+    P    
Sbjct: 460 ------REYCMP--VERSNRVIRHYHELSDRFLRVTFTDEGMLPLNPNALTLRAVPSTS- 510

Query: 476 ITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDI 535
            T ++  Q T V++RV++ L+ G  +CGR++SFLAFS+SQL+  SAWFF+EDG T+V  I
Sbjct: 511 -TPSTSRQMTSVYRRVQTALTEGLIMCGRRYSFLAFSASQLKQKSAWFFAEDGATTVAGI 569

Query: 536 KKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITP 595
           K+WMG+F  +N AK AARMG CF+S+YATV + P EVD +L D+ RNGY FSDGIG IT 
Sbjct: 570 KEWMGQFPIRNPAKHAARMGLCFTSSYATVTMQPGEVDEDLEDVTRNGYNFSDGIGVITE 629

Query: 596 DLAMEVAQKLKLDVNPPPCAYQIR 619
           DLA+EVA+ L L     P AYQIR
Sbjct: 630 DLALEVAEMLPLADRFAPSAYQIR 653


>gi|414877742|tpg|DAA54873.1| TPA: hypothetical protein ZEAMMB73_768916 [Zea mays]
          Length = 937

 Score = 1066 bits (2758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/905 (59%), Positives = 683/905 (75%), Gaps = 15/905 (1%)

Query: 10  LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV-TNTAEVRK 68
           LV  QVS GGFD  VKA +L  +LE   G VWRCRLKTS TP ++YPDF + T T+    
Sbjct: 19  LVTTQVSLGGFDATVKALDLADFLELNAGSVWRCRLKTSWTPPDAYPDFLLPTVTSAAAP 78

Query: 69  TDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGRTST 128
              Y++V PHAFVHFA P     A DAAGR+EL L+G+ L+ +   ++      R R+ +
Sbjct: 79  PPQYDRVPPHAFVHFARPEGARAAADAAGRSELILSGKPLRAA-SAQDSSLRASRRRSVS 137

Query: 129 PFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEH 188
           PF+ P   +E+G L + D F  AWRGPASG +F VDPFDG+C F F RD AF ++   E 
Sbjct: 138 PFRFPGSRLEVGDLPASDAFIAAWRGPASGLEFSVDPFDGSCHFIFARDTAFKVREFRES 197

Query: 189 AVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDD 248
            V++C+ K++F VR++  V+ +    C ++L++L+++P V YRTADDDI V VPFD+LDD
Sbjct: 198 VVMRCDVKLQFPVRDVAEVRVF-RLDC-SLLIRLSAAPLVCYRTADDDIHVSVPFDLLDD 255

Query: 249 DDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQV-DSLS-----RP 302
           DDPWIRTTD TPSGAIGRC +YRI+ S R   K+ + +TY+ +RRV + D +      R 
Sbjct: 256 DDPWIRTTDITPSGAIGRCGAYRITFSPRFWPKMERALTYMRDRRVAILDCVGGWGARRG 315

Query: 303 ITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQS 362
           +T+R+EP+F   M D FFC+ + EG+ F ++FLVNA++HKG+I+QH L+  FF LL+ + 
Sbjct: 316 LTVRDEPEFGERMQDLFFCVQHAEGLKFPVLFLVNALVHKGVISQHHLTPEFFGLLQRKE 375

Query: 363 REVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDI-VEVRRLVITPT 421
            +VNVAAL+  +  K+PVFDAC RLK +Q+ + +   L     +I D+  EVRRLVITPT
Sbjct: 376 DDVNVAALREFWGDKFPVFDACGRLKNLQDRVAR--YLKHLRNKIGDVNSEVRRLVITPT 433

Query: 422 KAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSF 481
           KAYC+PPEVE SNRV+R Y +++DRFLRVTFMDE +Q +N+NVL++  A IV+D+  NSF
Sbjct: 434 KAYCMPPEVERSNRVIRHYSEVSDRFLRVTFMDERMQMLNSNVLNFSAAQIVKDLMSNSF 493

Query: 482 SQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGR 541
             KT V+KRV++ L+ GF++CGRK+SFLAFSS+QLRD SAWFF+ED  T+V  I+KWMGR
Sbjct: 494 LHKTTVYKRVKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRTTTVETIRKWMGR 553

Query: 542 FTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEV 601
           FT KN+AK AARMGQCFSSTYATV + P EV+  L +++ NGY+FSDGIGKIT DLA+EV
Sbjct: 554 FTSKNVAKHAARMGQCFSSTYATVVLQPHEVNECLDEVEHNGYIFSDGIGKITCDLALEV 613

Query: 602 AQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWT 661
           AQKL+L  N PP AYQIRYAG KGV++ W  K DGIR+SLR SM+KF+S+HT LE+ SWT
Sbjct: 614 AQKLQLTDN-PPSAYQIRYAGFKGVISVWEGKNDGIRLSLRPSMHKFESNHTVLEVVSWT 672

Query: 662 RFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNT 721
           +FQPGFLNRQIITLLS+LNVPD +F  MQ++MLS LN +L DSDVAF+++TA+CAEQG T
Sbjct: 673 KFQPGFLNRQIITLLSSLNVPDAIFAQMQEAMLSNLNNILSDSDVAFDIVTASCAEQGTT 732

Query: 722 AAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQ 781
           AA+MLSAG +P TEPHL+ ML  IR++QL GL EK RIFVP GRWLMGCLDELG+LE GQ
Sbjct: 733 AALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWLMGCLDELGILEQGQ 792

Query: 782 CFIQVSEPFLGNCFSKHGSRF-AETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH 840
           CFI+ S P L NC  K+GSR  A     + I G +V+AKNPCLHPGD+RILEAVD PELH
Sbjct: 793 CFIRASSPSLNNCLVKYGSRLSAANTNAETILGTIVMAKNPCLHPGDVRILEAVDVPELH 852

Query: 841 HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLT 900
           HL DCLVFP+KG+RPH NEASGSDLDGDLYFVTWDENLIPP KKSW PM+Y+ AEAK L 
Sbjct: 853 HLVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPPGKKSWNPMDYSPAEAKQLP 912

Query: 901 RPVDQ 905
           R V Q
Sbjct: 913 RAVSQ 917


>gi|106733035|gb|ABF82437.1| putative RNA-dependent RNA polymerase 6 [Physcomitrella patens subsp.
            patens]
 gi|106733051|gb|ABF82438.1| putative RNA-dependent RNA polymerase 6 [Physcomitrella patens subsp.
            patens]
          Length = 1152

 Score =  879 bits (2271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1181 (41%), Positives = 682/1181 (57%), Gaps = 63/1181 (5%)

Query: 13   AQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDY 72
             +V    F  + +AA+L  YL + +G V R ++K                          
Sbjct: 4    TEVIVSNFPSSAEAADLAAYLRSVLGIVDRVKVK-------------------------- 37

Query: 73   EKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALK-VSLGPENPFRLNQRGRTSTPFK 131
            +   P+AFV F   T   +A   A    L      LK V    +    + QRG      +
Sbjct: 38   QITRPYAFVKFLSATVAKQACHDAECGRLIFQDCKLKIVPCTSQGSSEVCQRGEV---IE 94

Query: 132  LPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVI 191
            L  V +++GTL+   +F ++WR P       +    G     F+ D    + S       
Sbjct: 95   LRRVQLQLGTLIGPQDFLLSWRVPGYECSLRISKKRGKTFLFFSYD---KVMSPNLQDTE 151

Query: 192  KCEFKVEFLVREINLVK-QYSEFSCVAILLQLASSPRVWYRTADDD-ILVLVPFDMLDDD 249
             CEFK+E  V+E+  ++ Q      + I++QL S P + YRT+  D +    P  + DD+
Sbjct: 152  PCEFKLELSVKEVRKIQTQRGRMPEMMIVMQLFSPPLISYRTSQGDGVYCTTPVPLPDDE 211

Query: 250  DPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEP 309
            DPWIRT DF+P  +IGRC +Y IS+         +++ +  E+R+    L     + EE 
Sbjct: 212  DPWIRTVDFSPHRSIGRCLTYIISVRPTEYTPFRRMMDFFMEQRLCGSVLQNLNFLYEEI 271

Query: 310  DFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAA 369
            D +      +F +H+++G+ FE+MFLVNA++H+GIIN   L+  F++ +    R V++ A
Sbjct: 272  DCK--KGQNYFFVHHQKGVPFELMFLVNALVHRGIINMTSLTQEFYETVMSD-RAVSLFA 328

Query: 370  LKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQID-DIVEVRRLVITPTKAYCLPP 428
            L+H+ +Y  PVF+A  R++ VQEW  K+ +  +G K +    + + R++ TPT+  C  P
Sbjct: 329  LQHMLTYTHPVFNAVLRVQQVQEWTRKNDKFRQGEKALAFGSILMYRVLFTPTRGICTLP 388

Query: 429  EVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVF 488
             V  SNRVLR Y  L+DRFLRV+F+DE L  ++   L+  ++  VR ++      +T + 
Sbjct: 389  VVSRSNRVLRHYHTLSDRFLRVSFVDEDLHQISPGSLTVPVSRSVRCLSSTYEYNRTEIH 448

Query: 489  KRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIA 548
            +R+  I+  GF LCGR++SFLAFSSSQ+R  SAWFF+  G  +   I++WMG+F  +N+A
Sbjct: 449  RRILDIVENGFKLCGRQYSFLAFSSSQMRGGSAWFFASTGNVNTHLIRQWMGKFPSQNVA 508

Query: 549  KCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLD 608
            K AARMGQCFS ++ T+ V    V  +LPD+ RNGY+FSDG G I PD A+ V+  LKLD
Sbjct: 509  KYAARMGQCFSCSFPTLPVLKAMVR-KLPDVVRNGYIFSDGCGMIAPDFALRVSLSLKLD 567

Query: 609  VNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFL 668
              P    YQIRYAG KGVV+ WP  G    + LR+SM KF+S HT LE+ +W+++ P +L
Sbjct: 568  YTP--SVYQIRYAGYKGVVSTWPIPGRHSHLGLRDSMKKFESGHTELEVVNWSKYLPCYL 625

Query: 669  NRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSA 728
            NRQII LLSTL V + +F S+QD+ +++L  ML D + A+E++T +C++  +TAA ML  
Sbjct: 626  NRQIICLLSTLKVENAVFKSLQDAQVARLKAMLGDPNQAYEIVTTSCSDSHSTAATMLRG 685

Query: 729  GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSE 788
            GF P  EPHL  +L  I+ + L  L  KARIFVP GRW++GC+DE G+L  GQCFI VS 
Sbjct: 686  GFLPLKEPHLYELLVSIKFSLLEDLVSKARIFVPNGRWVIGCMDETGLLNYGQCFIHVSG 745

Query: 789  PFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVF 848
            P    C    G+    +  LQVI G V++ KNPCLHPGDIRILEAVD PELH + DCLV 
Sbjct: 746  PVSKACLGGDGNNLGHSGLLQVITGKVIMVKNPCLHPGDIRILEAVDLPELHSMVDCLVL 805

Query: 849  PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDI 908
            PQ G RPH NE SGSDLDGD+YF  WD NLIPPS +SW PMEY A ++K L RP + +D+
Sbjct: 806  PQNGPRPHPNEVSGSDLDGDVYFTCWDPNLIPPSGESWEPMEYAAHDSKILYRPANIKDV 865

Query: 909  IEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPA 968
              FF   M+N+ LG I NAHV  AD S  GALD +C+ LA LA+ AVDFPKTGK  TMP 
Sbjct: 866  KNFFVNSMMNDKLGFISNAHVARADKSPEGALDSDCLRLAHLASIAVDFPKTGKNATMPH 925

Query: 969  HLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIH--YDTD 1026
             L+   +PDFM KE   +Y+SNK++G LYR        ++      D N VD+   YD D
Sbjct: 926  DLRVNEWPDFMEKEGAVTYQSNKVIGELYRSVTKFLKAEVEQHQHAD-NAVDLDSIYDYD 984

Query: 1027 LEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHI-WSMPKYNS--RKQGE 1083
            L+VP    ++ DAW +K SYD QL  ++  + V RE  L+   +    P   S  R +G 
Sbjct: 985  LQVPGYEVYLDDAWTKKISYDRQLRCMMTHFNVQREAALIASWLKRGSPGLRSVNRNRG- 1043

Query: 1084 LKERLKHSYSALRKEFRQVFEKM------DSDCELLSEDEKNAL-----FERKASAWYQV 1132
              +    SY  L +EFR  FE +      D   E + E   + +     F  KASAWY V
Sbjct: 1044 --DAFAQSYGVLYEEFRAQFEGLKKGLDPDGYSEDMVESSSSEIKGPTDFAAKASAWYHV 1101

Query: 1133 TYHPEWVKKSLDLQEQDSARSV-VLLSFAWIANDYLARIKI 1172
            TYHPEW +K+L++ E     S   LLSF WI    L+ IK+
Sbjct: 1102 TYHPEWKQKALEIFENSGESSPRPLLSFPWITASVLSNIKL 1142


>gi|168067479|ref|XP_001785643.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
 gi|162662723|gb|EDQ49541.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
          Length = 1049

 Score =  867 bits (2239), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/1062 (43%), Positives = 643/1062 (60%), Gaps = 33/1062 (3%)

Query: 131  KLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAV 190
            +L  V +++GTL+   +F ++WR P       +    G     F+ D    + S      
Sbjct: 1    ELRRVQLQLGTLIGPQDFLLSWRVPGYECSLRISKKRGKTFLFFSYD---KVMSPNLQDT 57

Query: 191  IKCEFKVEFLVREINLVK-QYSEFSCVAILLQLASSPRVWYRTADDD-ILVLVPFDMLDD 248
              CEFK+E  V+E+  ++ Q      + I++QL S P + YRT+  D +    P  + DD
Sbjct: 58   EPCEFKLELSVKEVRKIQTQRGRMPEMMIVMQLFSPPLISYRTSQGDGVYCTTPVPLPDD 117

Query: 249  DDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREE 308
            +DPWIRT DF+P  +IGRC +Y IS+         +++ +  E+R+    L     + EE
Sbjct: 118  EDPWIRTVDFSPHRSIGRCLTYIISVRPTEYTPFRRMMDFFMEQRLCGSVLQNLNFLYEE 177

Query: 309  PDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVA 368
             D +      +F +H+++G+ FE+MFLVNA++H+GIIN   L+  F++ +    R V++ 
Sbjct: 178  IDCK--KGQNYFFVHHQKGVPFELMFLVNALVHRGIINMTSLTQEFYETVMSD-RAVSLF 234

Query: 369  ALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQID-DIVEVRRLVITPTKAYCLP 427
            AL+H+ +Y  PVF+A  R++ VQEW  K+ +  +G K +    + + R++ TPT+  C  
Sbjct: 235  ALQHMLTYTHPVFNAVLRVQQVQEWTRKNDKFRQGEKALAFGSILMYRVLFTPTRGICTL 294

Query: 428  PEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRV 487
            P V  SNRVLR Y  L+DRFLRV+F+DE L  ++   L+  ++  VR ++      +T +
Sbjct: 295  PVVSRSNRVLRHYHTLSDRFLRVSFVDEDLHQISPGSLTVPVSRSVRCLSSTYEYNRTEI 354

Query: 488  FKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNI 547
             +R+  I+  GF LCGR++SFLAFSSSQ+R  SAWFF+  G  +   I++WMG+F  +N+
Sbjct: 355  HRRILDIVENGFKLCGRQYSFLAFSSSQMRGGSAWFFASTGNVNTHLIRQWMGKFPSQNV 414

Query: 548  AKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL 607
            AK AARMGQCFS ++ T+ V    V  +LPD+ RNGY+FSDG G I PD A+ V+  LKL
Sbjct: 415  AKYAARMGQCFSCSFPTLPVLKAMVR-KLPDVVRNGYIFSDGCGMIAPDFALRVSLSLKL 473

Query: 608  DVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGF 667
            D  P    YQIRYAG KGVV+ WP  G    + LR+SM KF+S HT LE+ +W+++ P +
Sbjct: 474  DYTP--SVYQIRYAGYKGVVSTWPIPGRHSHLGLRDSMKKFESGHTELEVVNWSKYLPCY 531

Query: 668  LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLS 727
            LNRQII LLSTL V + +F S+QD+ +++L  ML D + A+E++T +C++  +TAA ML 
Sbjct: 532  LNRQIICLLSTLKVENAVFKSLQDAQVARLKAMLGDPNQAYEIVTTSCSDSHSTAATMLR 591

Query: 728  AGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVS 787
             GF P  EPHL  +L  I+ + L  L  KARIFVP GRW++GC+DE G+L  GQCFI VS
Sbjct: 592  GGFLPLKEPHLYELLVSIKFSLLEDLVSKARIFVPNGRWVIGCMDETGLLNYGQCFIHVS 651

Query: 788  EPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLV 847
             P    C    G+    +  LQVI G V++ KNPCLHPGDIRILEAVD PELH + DCLV
Sbjct: 652  GPVSKACLGGDGNNLGHSGLLQVITGKVIMVKNPCLHPGDIRILEAVDLPELHSMVDCLV 711

Query: 848  FPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRD 907
             PQ G RPH NE SGSDLDGD+YF  WD NLIPPS +SW PMEY A ++K L RP + +D
Sbjct: 712  LPQNGPRPHPNEVSGSDLDGDVYFTCWDPNLIPPSGESWEPMEYAAHDSKILYRPANIKD 771

Query: 908  IIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMP 967
            +  FF   M+N+ LG I NAHV  AD S  GALD +C+ LA LA+ AVDFPKTGK  TMP
Sbjct: 772  VKNFFVNSMMNDKLGFISNAHVARADKSPEGALDSDCLRLAHLASIAVDFPKTGKNATMP 831

Query: 968  AHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIH--YDT 1025
              L+   +PDFM KE   +Y+SNK++G LYR        ++      D N VD+   YD 
Sbjct: 832  HDLRVNEWPDFMEKEGAVTYQSNKVIGELYRSVTKFLKAEVEQHQHAD-NAVDLDSIYDY 890

Query: 1026 DLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHI-WSMPKYNS--RKQG 1082
            DL+VP    ++ DAW +K SYD QL  ++  + V RE  L+   +    P   S  R +G
Sbjct: 891  DLQVPGYEVYLDDAWTKKISYDRQLRCMMTHFNVQREAALIASWLKRGSPGLRSVNRNRG 950

Query: 1083 ELKERLKHSYSALRKEFRQVFEKM------DSDCELLSEDEKNAL-----FERKASAWYQ 1131
               +    SY  L +EFR  FE +      D   E + E   + +     F  KASAWY 
Sbjct: 951  ---DAFAQSYGVLYEEFRAQFEGLKKGLDPDGYSEDMVESSSSEIKGPTDFAAKASAWYH 1007

Query: 1132 VTYHPEWVKKSLDLQEQDSARSV-VLLSFAWIANDYLARIKI 1172
            VTYHPEW +K+L++ E     S   LLSF WI    L+ IK+
Sbjct: 1008 VTYHPEWKQKALEIFENSGESSPRPLLSFPWITASVLSNIKL 1049


>gi|226490831|ref|NP_001142097.1| uncharacterized protein LOC100274261 [Zea mays]
 gi|194707104|gb|ACF87636.1| unknown [Zea mays]
          Length = 552

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/551 (65%), Positives = 432/551 (78%), Gaps = 3/551 (0%)

Query: 645  MNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDS 704
            M+KF+S+HT LE+ SWT+FQPGFLNRQIITLLS+LNVPD +F  MQ++MLS LN +L DS
Sbjct: 1    MHKFESNHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFAQMQEAMLSNLNNILSDS 60

Query: 705  DVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAG 764
            DVAF+++TA+CAEQG TAA+MLSAG +P TEPHL+ ML  IR++QL GL EK RIFVP G
Sbjct: 61   DVAFDIVTASCAEQGTTAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKG 120

Query: 765  RWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRF-AETKKLQVIKGFVVIAKNPCL 823
            RWLMGCLDELG+LE GQCFI+ S P L NC  K+GSR  A     + I G +V+AKNPCL
Sbjct: 121  RWLMGCLDELGILEQGQCFIRASSPSLNNCLVKYGSRLSAANTNAETILGTIVMAKNPCL 180

Query: 824  HPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSK 883
            HPGD+RILEAVD PELHHL DCLVFP+KG+RPH NEASGSDLDGDLYFVTWDENLIPP K
Sbjct: 181  HPGDVRILEAVDVPELHHLVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPPGK 240

Query: 884  KSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDEN 943
            KSW PM+Y+ AEAK L R V Q DI+ FF K+MVNE LG I NAHVVHAD SEYGA+DE 
Sbjct: 241  KSWNPMDYSPAEAKQLPRAVSQHDIVGFFLKNMVNEKLGPISNAHVVHADMSEYGAMDEK 300

Query: 944  CILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDA 1003
            CI LAELAATAVDFPKTGKIV+MPA L+PKLYPDFMGKE   SY+S KILGRLYR  ++A
Sbjct: 301  CIQLAELAATAVDFPKTGKIVSMPASLRPKLYPDFMGKEDAISYRSEKILGRLYRSIQEA 360

Query: 1004 YDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREE 1063
              +D+        N  ++ YD D+EV  + DF++ AW  KCSY+ QLN LL QY V  E 
Sbjct: 361  SSDDLVPEETCTSN--NLPYDADMEVAGAADFLSSAWQCKCSYETQLNALLNQYGVRTEA 418

Query: 1064 ELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFE 1123
            ELVT HIWS+PKY+SR+QG++KERLK++Y AL KEFR +FE + +D   +S+DEK+  +E
Sbjct: 419  ELVTEHIWSLPKYSSRRQGDIKERLKNAYYALHKEFRSIFESIVTDQTEISDDEKSRFYE 478

Query: 1124 RKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTS 1183
             KASAWYQVTYHPEWV+KS ++ + D       LSFAWIA ++LARIKIRCR    +D+ 
Sbjct: 479  MKASAWYQVTYHPEWVQKSREMFKSDCEDMPARLSFAWIAVEHLARIKIRCRGEVKVDSP 538

Query: 1184 KPVNYLARYVA 1194
            +PV  LA Y++
Sbjct: 539  RPVERLAAYIS 549


>gi|168044164|ref|XP_001774552.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
 gi|162674107|gb|EDQ60620.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
          Length = 843

 Score =  620 bits (1599), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 366/864 (42%), Positives = 514/864 (59%), Gaps = 53/864 (6%)

Query: 333  MFLVNAVMHKGIINQHQLSDSFFDLLRGQ--SREVNVAALKHIYSYKWPVFDACKRLKLV 390
            MF VN ++    +    L   F+ LL+      E     L+ +     P +D  K    +
Sbjct: 1    MFQVNQLLQTSKLIGETLDSRFYHLLQPDVTPHEQAKLVLERLGKRVGPCWDPVKE---I 57

Query: 391  QEWLLKDPELYKGPKQID-----DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLAD 445
            QE L    E    P+ +       +  VRR+++TPTK YC  PEV+ SNRV R++   +D
Sbjct: 58   QEELGNMKETLSSPRSVSIKLASGMTWVRRVLVTPTKVYCTGPEVDTSNRVTRQFASHSD 117

Query: 446  RFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRK 505
            RF+R++F+DE L+ +++  LS    P          ++++ ++ RV   L  G  +   K
Sbjct: 118  RFMRMSFVDENLEPLSSVALS---VPRRGGAQDGVDAERSLLYNRVLKTLKEGIVIGDHK 174

Query: 506  FSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRF-TDKNIAKCAARMGQCFSSTYAT 564
            F FLAFSSSQLR+ S W F+   + +   I+ WMG F T +N+AKCAARMGQCFSS+  T
Sbjct: 175  FEFLAFSSSQLREHSVWMFASYAQLTATMIRAWMGDFLTIRNVAKCAARMGQCFSSSKPT 234

Query: 565  VEVPPTEVDPELPDIKR------NGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQI 618
            +EVP  EV+ ++PDI+R      + Y FSDGIGKI+ + A EVA++L+++V   P A+QI
Sbjct: 235  LEVPEQEVE-QIPDIEREDEFGMSKYCFSDGIGKISKEFAKEVAKRLQMEV--VPSAFQI 291

Query: 619  RYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLST 678
            RY G KGVVA  P      ++SLR SM KF S H  L+I + +RF P +LNRQII LLST
Sbjct: 292  RYGGYKGVVAVDPHSD--FKISLRPSMRKFASKHVGLDILASSRFLPSYLNRQIILLLST 349

Query: 679  LNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI-MLSAGFNPQTEPH 737
            L + D +F  MQ  M+S+LN ML D DVA ++L    A + +T  I ML+AG+ PQTEP 
Sbjct: 350  LGIEDSVFEQMQHRMVSELNDMLKDGDVARDMLQINHAGEMHTRLIDMLAAGYQPQTEPF 409

Query: 738  LRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLG----- 792
            ++ +L   RA+QL  LR+++RI  P GR LMGCLDE   L  G+ F+QV+ P LG     
Sbjct: 410  VKMLLEAFRASQLVDLRKRSRILEPKGRVLMGCLDETKSLSYGEIFLQVT-PALGRRKGL 468

Query: 793  ----NCFSKHGSRFAETKKLQ-VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLV 847
                  F  +    A  + +  V+ G+V++AKNPCLHPGDIR L+AVD P L H+ DCLV
Sbjct: 469  RDGLETFDSYPIGSAANQNIAYVVTGWVIVAKNPCLHPGDIRKLKAVDGPGLRHMVDCLV 528

Query: 848  FPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRD 907
            FPQKG RPH NE SGSDLDGDLYFV+WDE+LIP +     PM+Y +  A TL   V   +
Sbjct: 529  FPQKGHRPHPNECSGSDLDGDLYFVSWDEDLIPLNTDE--PMDYTSPGAMTLDHHVTIEE 586

Query: 908  IIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMP 967
            I EFF K+MV ++LG I NAHVV+AD     A    C  LA+L + AVDFPKTG    +P
Sbjct: 587  IQEFFVKYMVTDSLGVISNAHVVNADIEPAMARSTACQELAKLVSLAVDFPKTGVPAIIP 646

Query: 968  AHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDL 1027
             +L+P  YPDFM K   ++YKS ++LG+L+RQ KDA  E +    E+    ++  +D  +
Sbjct: 647  QNLRPTKYPDFMEKGDKETYKSERVLGKLFRQVKDASLEKLPC--EIPREDIERAFDPVM 704

Query: 1028 EVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKER 1087
             +    +FI  A   K  YD +L GL+ QY +  E E V+G++ ++ +   +++ ++ ER
Sbjct: 705  VITGYEEFIDMAKFHKNEYDRKLIGLMNQYGIETEAEAVSGYMLNLARQYVKRREDVVER 764

Query: 1088 LKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQE 1147
            ++ +  +L  E RQ F   D + + + +D+  A    KASAWY VTYHPE +K S     
Sbjct: 765  IRDAVRSLINEARQRF---DENADDMVDDDIYA----KASAWYHVTYHPEHIKVS----- 812

Query: 1148 QDSARSVVLLSFAWIANDYLARIK 1171
                R V L+SF W+  + L +IK
Sbjct: 813  ATGRREVHLISFPWVIYNVLLQIK 836


>gi|302786286|ref|XP_002974914.1| hypothetical protein SELMODRAFT_150191 [Selaginella moellendorffii]
 gi|300157073|gb|EFJ23699.1| hypothetical protein SELMODRAFT_150191 [Selaginella moellendorffii]
          Length = 834

 Score =  610 bits (1574), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 360/853 (42%), Positives = 500/853 (58%), Gaps = 57/853 (6%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            +  E+ F VN ++  G ++   L+  FF LL   +    ++AL ++   +    +   ++
Sbjct: 27   LPLEVEFKVNYLIQNGHVSPAGLTREFFGLLSENTPAWCLSALSNLERCEKTCLNPASQI 86

Query: 388  KLVQEWLLKDPELYKGPKQIDDI-VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADR 446
            +       +  E Y G    D+  + V+RL++TP K Y L PE+E SNRV R +    D 
Sbjct: 87   RNYMRTSNRRRERYLGAVAADESQIYVKRLLVTPLKVYFLGPELEESNRVTRHFSHKLDN 146

Query: 447  FLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKF 506
            FLRVTF+DE   ++N+ VLS            +    KT V+ R+ +IL  G  LCG+ F
Sbjct: 147  FLRVTFVDEDFDSLNSYVLSS-----------SRGRTKTEVYYRLLAILRLGIKLCGKDF 195

Query: 507  SFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATV 565
             FLAFS+SQLR+ S W F++D + +   I++WMG F   +N+AKCAARMGQ FS++  T+
Sbjct: 196  QFLAFSASQLRENSLWMFADDDEVTGEYIRQWMGDFLSIRNVAKCAARMGQSFSTSTRTL 255

Query: 566  EVPPTEV----DPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYA 621
            +VP  EV    D E   +  + Y FSDGIG I+ + A  VA++ +   +  P A+QIRY 
Sbjct: 256  DVPRGEVRQLSDVETFTMDGHKYCFSDGIGTISREFATRVARRCR--ASTVPSAFQIRYG 313

Query: 622  GCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNV 681
            G KGVVA  PA     ++SLR SM+KF S  TTL++   TR+ P +LNR+II+LLSTL V
Sbjct: 314  GYKGVVAVDPA--SCFKLSLRPSMSKFPSEQTTLDVLEKTRYIPSYLNREIISLLSTLEV 371

Query: 682  PDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI-MLSAGFNPQTEPHLRG 740
            PD +F  MQ   +  L++ML+DS   ++VL    A + +   + M+ AGF+P TEP++R 
Sbjct: 372  PDGVFERMQAHQVELLDRMLLDSAATYDVLRVLYAGECHKLLVSMVLAGFSPVTEPYMRS 431

Query: 741  MLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGS 800
            +L   RAAQL  L +K+RIFVP GR LMGCLDE  VL  GQCF+QVS P           
Sbjct: 432  LLQAFRAAQLLSLEKKSRIFVPKGRLLMGCLDEQRVLRYGQCFVQVS-PL---------- 480

Query: 801  RFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEA 860
            +     +  V+ G VV+AKNPCLHPGD+ +LEAVD PELHH+ DC+VFPQ+G RPH NE 
Sbjct: 481  QVTARNQAFVVTGSVVVAKNPCLHPGDVLVLEAVDVPELHHMVDCIVFPQQGPRPHPNEC 540

Query: 861  SGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNEN 920
            SGSDLDGD YFV+WD  LIPP  K  PPM Y A  A  L   V   +I EFF   + +++
Sbjct: 541  SGSDLDGDQYFVSWDSALIPP--KRHPPMNYEAPPAVELDHSVRLEEIQEFFVNWITSDS 598

Query: 921  LGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMG 980
            LG I +AH+  +D S+  A D  C+ LA L + AVDFPKTG    MP  L+P+ YPDFM 
Sbjct: 599  LGVIAHAHLALSDWSDLQARDPKCMELARLYSVAVDFPKTGVPAVMPPELRPEQYPDFME 658

Query: 981  KEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAW 1040
            K   ++Y S +++G+LYR  ++++  D + S  V     D  YD  L V      + +A 
Sbjct: 659  KRNKRTYISTRVIGKLYRSIRESH-RDTNTSPLVSERSFDQQYDRALVVQGYQSHLEEAK 717

Query: 1041 NQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFR 1100
              K  YD +L  +L  YKV+ E E+++G + S+ +Y+ R+QG+   R+  +  AL KE R
Sbjct: 718  FFKECYDSKLTSILNHYKVS-EAEIMSGSVRSLARYSRRRQGDAMARVVLAAKALVKEAR 776

Query: 1101 QVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFA 1160
              F+    D   ++E+E  A    KA AWY VTYHPE  KKS             LLSF 
Sbjct: 777  GWFD----DGGEITENEACA----KAFAWYHVTYHPEARKKS------------DLLSFP 816

Query: 1161 WIANDYLARIKIR 1173
            W+ +D L  IK R
Sbjct: 817  WVVSDKLVAIKKR 829


>gi|225424397|ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 389/1058 (36%), Positives = 575/1058 (54%), Gaps = 82/1058 (7%)

Query: 135  VCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCE 194
            + +  G  +S + F V W+       F      G+      R   F L   +E   ++  
Sbjct: 100  ITLHFGCQMSDERFCVLWKAINVSVKF------GSG----LRKFYFFLSHGSEEYKLELS 149

Query: 195  FKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIR 254
            ++  + ++  +   Q ++F    +L+QL  +P+++    + D+ VL  +     DD W+R
Sbjct: 150  YENIWQIQLQHPRGQITKF----LLIQLLGAPQIY----EKDVPVLSYYFKEAPDDQWVR 201

Query: 255  TTDFTPSGAIGRCNSYRISISSRHRGKLSKV---ITYLGERRVQV-----DSLSRPITIR 306
              DFTPS  IG+  S+ + +   +  +L        Y  E   +       S S  + + 
Sbjct: 202  EIDFTPSCFIGQ--SFALCLELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHNLHL- 258

Query: 307  EEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVN 366
                  VP+  P         + F+I+F +N ++  G ++   L  SFF L+  +   ++
Sbjct: 259  ------VPILGP----PQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRLVDPERFPIS 308

Query: 367  VA--ALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQID-DIVEVRRLVITPTKA 423
                AL+ +Y  K   ++  + L       +K P        +D  +V VRR+ ITP K 
Sbjct: 309  FIEHALEKLYHLKECCYEPVRWLSEQYRTYVKKPVAGSPAISLDTGLVYVRRVQITPCKV 368

Query: 424  YCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQ 483
            Y   PEV +SNRVLR Y +  D FLRV+F+DE L+ +++ V+S           ++   +
Sbjct: 369  YFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVIS---------PRMSKEGR 419

Query: 484  KTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFT 543
            +T V++R+ SIL  G  +  +KF FLAFSSSQLRD SAW F+     +  +I+ WMG F+
Sbjct: 420  RTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFS 479

Query: 544  D-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK----RNGYVFSDGIGKITPDLA 598
              +N+AK AAR+GQ FSS+  T++V   E++  +PDI+    R  YVFSDGIGKI+P LA
Sbjct: 480  QIRNVAKYAARLGQSFSSSKETLKVAKDEIE-NIPDIEIHKGRTTYVFSDGIGKISPQLA 538

Query: 599  MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEIC 658
              VA K     +  P A+QIRY G KGVVA  P      ++SLR+SM K++S +T L++ 
Sbjct: 539  HRVAIKCGCK-SSTPSAFQIRYGGYKGVVAVDPTSSR--KLSLRKSMFKYESDNTNLDVL 595

Query: 659  SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT-AACAE 717
            +W+++QP FLNRQ+ITLLSTL V D +F   Q + + +L+ +L D   A E L   +  E
Sbjct: 596  AWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGE 655

Query: 718  QGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVL 777
              N    ML  G+ P  EP L  ML   RAA+L  LR K RIFVP GR +MGCLDE   L
Sbjct: 656  NTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTL 715

Query: 778  EGGQCFIQVS----EPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEA 833
            E G+ F+Q+S        G+     GS         +++G +V+AKNPCLHPGD+R+L A
Sbjct: 716  EYGEVFVQISGTGGRQSFGDSLMFRGS--GSHHDNFILEGKIVVAKNPCLHPGDVRVLWA 773

Query: 834  VDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNA 893
            V+ P LHH+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD +LIPP + +  PM+Y  
Sbjct: 774  VNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQIN--PMDYTP 831

Query: 894  AEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAAT 953
            A  K L   V   ++ E+F  ++VN++LG I NAH V AD     A  + C  LA+L + 
Sbjct: 832  APTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSI 891

Query: 954  AVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSE 1013
            AVDFPKTG    +P +L+ K YPDFM K    +Y+S  ++G+L+R+ KD    + ++ S 
Sbjct: 892  AVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRS- 950

Query: 1014 VDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSM 1073
               +     YD D+EV    D+++DA+  K  YD +L  L++ Y +  E E+++G I  M
Sbjct: 951  FTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRM 1010

Query: 1074 PKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVT 1133
             K   R++    E +  +  +LRKE R  F KM S+ +  ++D        KASAWY VT
Sbjct: 1011 SKSFDRRKD--AEAIGLAVKSLRKEARTWFNKMGSETDSEADD-----VYAKASAWYHVT 1063

Query: 1134 YHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
            YHP++     +  ++D       LSF W   D L   K
Sbjct: 1064 YHPDYWGCYNEGMDRDH-----FLSFPWCVYDKLIHTK 1096


>gi|356499585|ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
          Length = 1125

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 404/1062 (38%), Positives = 581/1062 (54%), Gaps = 79/1062 (7%)

Query: 132  LPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFT---RDIAFALKSSTEH 188
            L DV +  G  +S+  F V W+      D +V+   G  K  F     ++ + L+ S E+
Sbjct: 100  LDDVKLSFGCQISKGRFSVLWKK----QDVIVNFGSGMRKMHFLFSHNNVQYKLELSYEN 155

Query: 189  AVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRT--ADDDILVLVPFDML 246
                  +K+E L R  N   +Y       +L+QL  +PRV+        +I     F+  
Sbjct: 156  I-----WKIE-LHRPRNETTRY-------LLIQLLGAPRVFENDVPTSTNIFDDPLFNFF 202

Query: 247  DD--DDPWIRTTDFTPSGAIGRCNSYRISI-SSRHRGKLSKVITYLGERRVQVDSLSRPI 303
             D  D+ WIR  DFTP   IG+ ++  + + + R      +   Y  E   Q  +L   +
Sbjct: 203  KDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQLPNFRENFAYYEESERQY-TLQTGV 261

Query: 304  TIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLL--RGQ 361
               +     VP+  P   +     IS++I+F VN+++    +    L   F+ L+  R  
Sbjct: 262  PFSQNWGL-VPIVAPPLGVK----ISYDILFKVNSLVQHACLAGPALDGDFYRLVDPRRM 316

Query: 362  SREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDD--IVEVRRLVIT 419
             RE    AL+ IY  K   ++  K L    +  L+     + P    D  +V VRR+ IT
Sbjct: 317  PREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPRSPAISLDTGLVYVRRVQIT 376

Query: 420  PTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLN 479
            P K Y   PE+ +SNRVLR +++  D FLRV+F+DE L  + +            D++  
Sbjct: 377  PCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELDKLFST-----------DLSSR 425

Query: 480  SFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF--SEDGKTSVLDIKK 537
            S ++KT ++ R+ SIL  G  +  +KF FLAFSSSQLR+ S W F  +E G T+   I+K
Sbjct: 426  SQNKKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAPTETGCTAAY-IRK 484

Query: 538  WMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKR-----NGYVFSDGIG 591
            WMG F+  +N+AK AAR+GQ F S+  T+ V   EV+  +PD+K+     N YVFSDGIG
Sbjct: 485  WMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEI-IPDVKKLTYDGNEYVFSDGIG 543

Query: 592  KITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSH 651
            KI+ + A +VA+K   D  P   A+QIRY G KGVVA  P      ++SLR+SM K+ S 
Sbjct: 544  KISLEFAQKVAKKCGYDCTP--SAFQIRYGGYKGVVAVDPK--SCYKLSLRKSMRKYDSD 599

Query: 652  HTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL 711
            +T L++ + ++FQP +LNRQ+I+LLSTL + D++F   Q   +++LN +L DS  A EVL
Sbjct: 600  NTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTDSLKAQEVL 659

Query: 712  TAACA-EQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGC 770
                A E  N    ML  G+ P  EP L  ML   RA++L  LR K+RIF+P GR +MGC
Sbjct: 660  DLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIPKGRAMMGC 719

Query: 771  LDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRI 830
            LDE   LE GQ F+Q S   L N      S   +  K  ++KG VV+AKNPCLHPGD+R+
Sbjct: 720  LDETRTLEYGQVFVQFSNNRLQNLSDDFFS--YDLPKNYMVKGKVVVAKNPCLHPGDVRV 777

Query: 831  LEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPME 890
            L+AVD P+L+H+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD  LIP   +   PM+
Sbjct: 778  LQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIP--SRPIDPMD 835

Query: 891  YNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAEL 950
            Y A     L   V   ++ E+FA ++VN++LG I NAH V AD     A+ + C+ LA L
Sbjct: 836  YTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMSDQCVKLARL 895

Query: 951  AATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISV 1010
             +TAVDFPKTG    +P  L  K YPDFM K    +YKS+ ++G+L+R+ K+      S+
Sbjct: 896  FSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKEISTSAGSI 955

Query: 1011 SSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHI 1070
            +S   +   D  YD ++EV   +D++ DA+  K +YD +L  L++ Y +  E E++ G+I
Sbjct: 956  TSFTKLVARD-SYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILGGNI 1014

Query: 1071 WSMPK-YNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAW 1129
              M K +N R+  E    +  +  +LRKE R  F +  S        +  A    KASAW
Sbjct: 1015 MKMSKSFNKRRDAEA---INMAVRSLRKEARAWFNENSSGDVDSGSSDVYA----KASAW 1067

Query: 1130 YQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
            Y VTYHP +     +   +D       LSF+W     L +IK
Sbjct: 1068 YHVTYHPSYWGCYNEGMNRDH-----YLSFSWCVYPLLVQIK 1104


>gi|40794965|gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
          Length = 1115

 Score =  602 bits (1553), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 417/1122 (37%), Positives = 596/1122 (53%), Gaps = 110/1122 (9%)

Query: 79   AFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGRTSTPFKLPDVCVE 138
            A V F    + +  ++AA R  L      LK      +   +  R RT T F L    + 
Sbjct: 52   AIVQFQSEAHASLVLNAAQRNALRSGSHYLKARYAERD---IVPRPRT-TIFNLQGAKLH 107

Query: 139  IGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFT-RDIAFALKSSTEHAVIKCEFKV 197
             G L+      V W    SGTD  V+       F F  + I F L  +++   ++  ++ 
Sbjct: 108  FGCLLKERVLSVLW----SGTDVSVE-------FGFAMKRIDFCLIYNSKKYKLELSYES 156

Query: 198  EF---LVREINLVKQYSEFSCVAILLQLASSPRVWYR------TADDDILVLVPFDMLDD 248
             +   L R   L K++       +L+Q+ ++P+++ +      +  DD L     D  D 
Sbjct: 157  IWEIQLHRPPGLQKKF-------LLIQVQAAPKIYEQNIRLSGSMYDDPLFNYFRD--DT 207

Query: 249  DDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREE 308
            DD W RTTDFTPS +IG+  SY +S+   H   L  +  Y     V  D  +       +
Sbjct: 208  DDQWTRTTDFTPSASIGQ--SYILSLELPHICYLPNIREYFVYYEVHNDIFNL------Q 259

Query: 309  PDFEVPMSDPFFCI---HYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLR-GQSRE 364
            P +    +  F  +   HY   + +EI+F +N ++  G ++   L D+F+ L+  G  R 
Sbjct: 260  PGYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLVQNGTLSGPTLDDNFYRLVSPGYERI 319

Query: 365  VNVA-ALKHIYSYKWPVFDACKRL-----KLVQEWLLKDPELYKGPKQIDD--IVEVRRL 416
              +  AL+ +   K    +    L     K+ +  +L  P +      +DD  +V V R+
Sbjct: 320  DRIKRALEKMSYLKKTCLNPTNWLSEQYKKMRRSRVLTSPNI-----TLDDDGLVYVYRV 374

Query: 417  VITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDI 476
             ITP K Y   PE+ +SNRV+R Y    D FLR++F+DE  + + +  LS   AP     
Sbjct: 375  QITPAKVYFYGPEINVSNRVVRNYAADLDNFLRISFVDEDCEKLRSTDLSQRSAP----- 429

Query: 477  TLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIK 536
               + +++T ++ RV S+LS G  +  + F FLAFSSSQLRD SAW F+     S  DI+
Sbjct: 430  --GNNTRRTALYNRVLSVLSNGITIGDKHFDFLAFSSSQLRDNSAWMFASRPGLSASDIR 487

Query: 537  KWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKI 593
            +WMG F + +N+AK AAR+GQ FSS+  T++V   EV  E PD+  NG  YVFSDGIG I
Sbjct: 488  EWMGNFRNIRNVAKYAARLGQSFSSSTETLKVHKYEVK-EAPDVT-NGTEYVFSDGIGTI 545

Query: 594  TPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHT 653
            + D A EV++K  L     P A+QIRY G KGVVA  P      ++SLR+SM+KFQS + 
Sbjct: 546  SADFADEVSKKCNL-TRFTPSAFQIRYGGYKGVVAIDPTSQ--WKLSLRKSMSKFQSDNI 602

Query: 654  TLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT- 712
            TL++ +++++QP FLNRQ+ITLLSTL V D +F   Q   + +LN+M+ +   A + +  
Sbjct: 603  TLDVLAYSKYQPCFLNRQLITLLSTLGVIDSIFELKQQEAVQQLNRMVAEPQAAIDAIEL 662

Query: 713  AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLD 772
                E  N    +L  G+ P  EP++  +L   RA++L  L+ ++RIFVP GR +MGCLD
Sbjct: 663  MPMGEITNIVKELLLCGYRPDVEPYVSMLLQTFRASKLLELKTRSRIFVPKGRAMMGCLD 722

Query: 773  ELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILE 832
            E   L+ GQ FIQ S               A+ +   V+ G V++AKNPC+HPGDIRIL+
Sbjct: 723  ETRTLKYGQVFIQASNS-------------ADDRGKSVVTGKVIVAKNPCIHPGDIRILQ 769

Query: 833  AVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYN 892
            AV  P L H+ +C+VFPQ G RPH NE SGSDLDGD+YFV+WD +LIP   +   PM+Y 
Sbjct: 770  AVHSPLLGHMVNCVVFPQLGPRPHPNECSGSDLDGDIYFVSWDPDLIP--TRMVAPMDYT 827

Query: 893  AAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAA 952
             A  +TL   V   ++ E+F  ++VNE+LG I NAHVV AD     A    CI LAEL +
Sbjct: 828  PAPTETLDHDVMIEEVHEYFTNYIVNESLGIIANAHVVFADRQSLKAESTQCIKLAELFS 887

Query: 953  TAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSS 1012
             AVD+PKTG    +P  L  K YPDFM K    +Y S  ++G+LYR+ K         + 
Sbjct: 888  IAVDYPKTGVPAQIPHELHVKEYPDFMEKLDRATYVSEGVIGKLYREIKKQNPHIRHFTK 947

Query: 1013 EVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWS 1072
            +V      + YDTDL V    D+I +A   K  YD +L  L+E Y +N E E+++G I  
Sbjct: 948  DV----ATLSYDTDLIVDGYQDYITEAVWFKEEYDFKLGNLMEHYGINSEAEIISGCILK 1003

Query: 1073 MPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQV 1132
            M K  ++K      RL  +  +LRKE R  F +M SD    S D   AL   KASAWY V
Sbjct: 1004 MAKNFTKKSDADAIRL--AVKSLRKEARSWFSEMGSD---ESGDGHKALVA-KASAWYHV 1057

Query: 1133 TYHPEW---VKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
            TYHP++     +  D +         L+SF W   D L  IK
Sbjct: 1058 TYHPQYWGCYNEGYDHRPH-------LISFPWCVYDKLILIK 1092


>gi|197223666|gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
          Length = 1115

 Score =  601 bits (1549), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 414/1121 (36%), Positives = 591/1121 (52%), Gaps = 108/1121 (9%)

Query: 79   AFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGRTSTPFKLPDVCVE 138
            A V F    + +  ++AA R  L      LK      +   +  R RT T F L    + 
Sbjct: 52   AIVQFQSEAHASLVLNAAQRNALRSGSHYLKARYAERD---IVPRPRT-TIFNLQGAKLH 107

Query: 139  IGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFKVE 198
             G L+      V W G     +F          F   R I F L  +++   ++  ++  
Sbjct: 108  FGCLLKERVLSVLWSGTNVSVEF---------GFAMKR-IDFCLIYNSKKYKLELSYESI 157

Query: 199  F---LVREINLVKQYSEFSCVAILLQLASSPRVWYR------TADDDILVLVPFDMLDDD 249
            +   L R   L K++       +L+Q+ ++P+++ +      +  DD L     D  D D
Sbjct: 158  WEIQLHRPPGLQKKF-------LLIQVQAAPKIYEQNIRLSGSMYDDPLFNYFRD--DTD 208

Query: 250  DPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEP 309
            D W RTTDFTPS +IG+  SY + +   H   L  +  Y     V  D  +       +P
Sbjct: 209  DQWTRTTDFTPSASIGQ--SYILCLELPHICYLPNIREYFVYYEVHNDIFNL------QP 260

Query: 310  DFEVPMSDPFFCI---HYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLR-GQSREV 365
             +    +  F  +   HY   + +EI+F +N ++  G ++   L D+F+ L+  G  R  
Sbjct: 261  GYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLVQNGTLSGPTLDDNFYRLVSPGYERID 320

Query: 366  NVA-ALKHIYSYKWPVFDACKRL-----KLVQEWLLKDPELYKGPKQIDD--IVEVRRLV 417
             +  AL+ +   K    +    L     K+ +  +L  P +      +DD  +V V R+ 
Sbjct: 321  RIKRALEKMSYLKKTCLNPTNWLSEQYKKMRRSRVLTSPNI-----TLDDDGLVYVYRVQ 375

Query: 418  ITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDIT 477
            ITP K Y   PE+ +SNRV+R Y    D FLR++F+DE  + + +  LS   AP      
Sbjct: 376  ITPAKVYFYGPEINVSNRVVRNYAADLDNFLRISFVDEDCEKLRSTDLSQRSAP------ 429

Query: 478  LNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKK 537
              + +++T ++ RV S+LS G  +  + F FLAFSSSQLRD SAW F+     S  DI++
Sbjct: 430  -GNNTRRTALYNRVLSVLSNGITIGDKHFDFLAFSSSQLRDNSAWMFASRPGLSASDIRE 488

Query: 538  WMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKIT 594
            WMG F + +N+AK AAR+GQ FSS+  T++V   EV  E PD+  NG  YVFSDGIG I+
Sbjct: 489  WMGNFRNIRNVAKYAARLGQSFSSSTETLKVHKYEVK-EAPDVT-NGTEYVFSDGIGTIS 546

Query: 595  PDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTT 654
             D A EV++K  L     P A+QIRY G KGVVA  P      ++SLR+SM+KFQS + T
Sbjct: 547  ADFADEVSKKCNL-TRFTPSAFQIRYGGYKGVVAIDPTSQ--WKLSLRKSMSKFQSDNIT 603

Query: 655  LEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT-A 713
            L++ +++++QP FLNRQ+ITLLSTL V D +F   Q   + +LN+M+ +   A + +   
Sbjct: 604  LDVLAYSKYQPCFLNRQLITLLSTLGVIDSIFELKQQEAVQQLNRMVAEPQAAIDAIELM 663

Query: 714  ACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDE 773
               E  N    +L  G+ P  EP++  +L   RA++L  L+ ++RIFVP GR +MGCLDE
Sbjct: 664  PMGEITNIVKELLLCGYRPDVEPYVSMLLQTFRASKLLELKTRSRIFVPKGRAMMGCLDE 723

Query: 774  LGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEA 833
               L+ GQ FIQ S               A+ +   V+ G V++AKNPC+HPGDIRIL+A
Sbjct: 724  TRTLKYGQVFIQASNS-------------ADDRGKSVVTGKVIVAKNPCIHPGDIRILQA 770

Query: 834  VDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNA 893
            V  P L H+ +C+VFPQ G RPH NE SGSDLDGD+YFV+WD +LIP   +   PM+Y  
Sbjct: 771  VHSPLLGHMVNCVVFPQLGPRPHPNECSGSDLDGDIYFVSWDPDLIP--TRMVAPMDYTP 828

Query: 894  AEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAAT 953
            A  +TL   V   ++ E+F  ++VNE+LG I NAHVV AD     A    CI LAEL + 
Sbjct: 829  APTETLDHDVMIEEVHEYFTNYIVNESLGIIANAHVVFADRQSLKAESTQCIKLAELFSI 888

Query: 954  AVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSE 1013
            AVD+PKTG    +P  L  K YPDFM K    +Y S  ++G+LYR+ K         + +
Sbjct: 889  AVDYPKTGVPAQIPHELHVKEYPDFMEKLDRATYVSEGVIGKLYREIKKQNPHIRHFTKD 948

Query: 1014 VDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSM 1073
            V      + YDTDL V    D+I +A   K  YD +L  L+E Y +N E E+++G I  M
Sbjct: 949  V----ATLSYDTDLIVDGYQDYITEAVWFKEEYDFKLGNLMEHYGINSEAEIISGCILKM 1004

Query: 1074 PKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVT 1133
             K  ++K      RL  +  +LRKE R  F +M SD    S D   AL   KASAWY VT
Sbjct: 1005 AKNFTKKSDADAIRL--AVKSLRKEARSWFSEMGSD---ESGDGHKALVA-KASAWYHVT 1058

Query: 1134 YHPEW---VKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
            YHP++     K  D +         L+SF W   D L  IK
Sbjct: 1059 YHPQYWGCYNKGYDHRPH-------LISFPWCVYDKLILIK 1092


>gi|142942402|gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  601 bits (1549), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 386/992 (38%), Positives = 553/992 (55%), Gaps = 81/992 (8%)

Query: 218  ILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSG---AIGRCNSYRISI 274
            +L+QL  +PR++ R  +        F     DD W+RTTDFTPS    +   C  +R  +
Sbjct: 166  LLIQLFGAPRIYKRLENS----CYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRRGV 221

Query: 275  SSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFCIHYEEGIS--FEI 332
               H     +   +  ER   +   +       +    VP   P       EGI+  ++I
Sbjct: 222  ---HLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQP------PEGIAIPYKI 272

Query: 333  MFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNV--AALKHIYSYKWPVFDACKRLKLV 390
            +F +++++  G I    L+  FF L+  Q R V     AL+ +Y  K   +D  + L   
Sbjct: 273  LFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQ 332

Query: 391  QEWLLKDPELYKGPK-QIDD-IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFL 448
             +  LK  +  K P   +DD +V VRR+++TP K Y   PEV +SNRVLR Y +  D FL
Sbjct: 333  YDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFL 392

Query: 449  RVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSF 508
            RV+F+DE  + + +  L      + +  T N    +T +++R+ S L  GF +  +KF F
Sbjct: 393  RVSFVDEEWEKLYSTEL------LPKASTGNGI--RTNIYERILSTLRKGFVIGDKKFEF 444

Query: 509  LAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEV 567
            LAFSSSQLRD S W F+     +  DI+ WMG F+  KN+AK AAR+GQ F S+  T+ V
Sbjct: 445  LAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSV 504

Query: 568  PPTEVDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKG 625
               E++  +PD+K +G  YVFSDGIGKI+ D A  VA K  L   P   A+QIRY G KG
Sbjct: 505  LRHEIE-VIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQYTP--SAFQIRYGGYKG 561

Query: 626  VVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEM 685
            VVA  P     +++SLR+SM+K++S +  L++  W+++QP +LNRQ++TLLSTL V D++
Sbjct: 562  VVAVDPYSS--MKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDV 619

Query: 686  FWSMQDSMLSKLNQMLVDSDVAFEVLT-AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTC 744
                Q   + +L+ +L DS  A E L   +  E  N    ML+ G+ P  EP L  ML  
Sbjct: 620  LEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQT 679

Query: 745  IRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNC---FSKHGSR 801
             RA++L  LR ++RIF+P GR +MGCLDE   LE GQ F+Q    F G     FS+    
Sbjct: 680  FRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQ----FTGAGHREFSEDLHP 735

Query: 802  FAETKKLQ---VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTN 858
            F  ++      ++KG VV+AKNPCLHPGDIR+L AVD P LHH+ DC+VFPQKG RPH N
Sbjct: 736  FNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPN 795

Query: 859  EASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVN 918
            E SGSDLDGD+YFV WD+++IPP  +    MEY  A +  L   V   ++ E+F  ++VN
Sbjct: 796  ECSGSDLDGDIYFVCWDQDMIPP--RQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVN 853

Query: 919  ENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDF 978
            ++LG I NAHVV AD     A+ + C  LAEL + AVDFPKTG    +P+ L+PK YPDF
Sbjct: 854  DSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDF 913

Query: 979  MGKEAYQ-SYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDI---HYDTDLEVPESVD 1034
            M K   + +Y S +++G+L+R+ KD   +    +S + I   D+    YD DLEV    D
Sbjct: 914  MDKPPDKTTYISERVIGKLFRKVKDKAPQ----ASSIAIFTRDVARRSYDADLEVDGFED 969

Query: 1035 FIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSA 1094
            +I +A++ K  YD +L  L++ Y +  E E+++G I    K   R++    E +  +  A
Sbjct: 970  YIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKD--AEAISVAVRA 1027

Query: 1095 LRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPE-WVKKSLDLQEQDSARS 1153
            LRKE R  F++ +   ++L           KASAWY VTYHP  W   +  L+       
Sbjct: 1028 LRKEARTWFKRRNDIDDMLP----------KASAWYHVTYHPTYWGCYNQGLKRDH---- 1073

Query: 1154 VVLLSFAWIANDYLARI---KIRCREMANIDT 1182
               +SF W   D L +I   K R R + N+ +
Sbjct: 1074 --FISFPWCVYDQLIQIKKEKARNRPVLNLSS 1103


>gi|350537951|ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
 gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase [Solanum lycopersicum]
          Length = 1114

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 399/1059 (37%), Positives = 576/1059 (54%), Gaps = 87/1059 (8%)

Query: 163  VDPFDG-TCKF-CFTRDIAFALKSSTEHAVI---------------KCEFKVEFLVREIN 205
            VD  DG T  F C   D  FA+  STE ++                  ++K++     I 
Sbjct: 92   VDQMDGITLNFGCQISDDKFAVLGSTEVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIW 151

Query: 206  LVKQYSEFSCVA--ILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGA 263
             V  +  +   A  +L+QL  +PR++ R  +        F     DD W+RTTDF PS  
Sbjct: 152  QVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS----CYSFFKETPDDQWVRTTDFPPSW- 206

Query: 264  IGRCNSYRISISSRHR-GKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFCI 322
            IG  +S  +      R     +   +  ER   +   +       +    VP   P    
Sbjct: 207  IGLSSSLCLQFRRGVRLPNFEESFFHYAERENNITLQTGFTFFVSQKSALVPNVQP---- 262

Query: 323  HYEEGIS--FEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKH----IYSY 376
               EGIS  ++I+F +++++  G I    L+  FF L+  + R  NVA ++H    +Y  
Sbjct: 263  --PEGISIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPRRR--NVACIEHALEKLYYI 318

Query: 377  KWPVFDACKRLKLVQEWLLKDPELYKGPK-QIDD-IVEVRRLVITPTKAYCLPPEVELSN 434
            K   +D  + L    +  LK  +  K P   +DD +V VRR+++TP K Y   PEV +SN
Sbjct: 319  KECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 378

Query: 435  RVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSI 494
            RVLR Y +  D FLRV+F+DE  + +       +   ++   +  S   +T +++R+ S 
Sbjct: 379  RVLRNYSEDIDNFLRVSFVDEEWEKL-------YSTDLLPKASTGS-GVRTNIYERILST 430

Query: 495  LSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAAR 553
            L  GF +  +KF FLAFSSSQLRD S W F+     +  DI+ WMG F+  KN+AK AAR
Sbjct: 431  LRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAAR 490

Query: 554  MGQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQKLKLDVNP 611
            +GQ F S+  T+ V   E++  +PD+K +G  YVFSDGIGKI+ D A  VA K  L   P
Sbjct: 491  LGQSFGSSRETLSVLRHEIE-VIPDVKVHGTSYVFSDGIGKISGDFAHRVASKCGLQYTP 549

Query: 612  PPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQ 671
               A+QIRY G KGVV   P     +++SLR+SM+K++S +  L++  W+++QP +LNRQ
Sbjct: 550  --SAFQIRYGGYKGVVGVDP--DSSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQ 605

Query: 672  IITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT-AACAEQGNTAAIMLSAGF 730
            +ITLLSTL V DE+    Q   + +L+ +L DS  A E L   +  E  N    ML+ G+
Sbjct: 606  LITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGY 665

Query: 731  NPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPF 790
             P  EP L  ML   RA++L  LR ++RIF+P GR +MGCLDE   LE GQ F+Q +   
Sbjct: 666  KPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAG 725

Query: 791  LGNCFSKHGSRFAETKKLQ---VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLV 847
             G  FS     F  ++      ++KG VV+AKNPCLHPGDIR+L+AV+   LHH+ DC+V
Sbjct: 726  HGE-FSDDLHPFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVV 784

Query: 848  FPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRD 907
            FPQKG RPH NE SGSDLDGD+YFV WD+++IPP  +   PMEY  A +  L   V   +
Sbjct: 785  FPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPP--RQVQPMEYPPAPSIQLDHDVTIEE 842

Query: 908  IIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMP 967
            + E+F  ++VN++LG I NAHVV AD     A+ + C  LAEL + AVDFPKTG    +P
Sbjct: 843  VEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIP 902

Query: 968  AHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDL 1027
            + L+PK YPDFM K    SY S +++G+L+R+ KD   +  S+++    +     YD D+
Sbjct: 903  SQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIAT-FTRDVARRSYDADM 961

Query: 1028 EVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKER 1087
            EV    D+I +A++ K  YD +L  L++ Y +  E E+++G I    K   R++    E 
Sbjct: 962  EVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKD--AEA 1019

Query: 1088 LKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPE-WVKKSLDLQ 1146
            +  +  ALRKE R  F++ +   ++L           KASAWY VTYHP  W   +  L+
Sbjct: 1020 ISVAVRALRKEARAWFKRRNDIDDMLP----------KASAWYHVTYHPTYWGCYNQGLK 1069

Query: 1147 EQDSARSVVLLSFAWIANDYLARI---KIRCREMANIDT 1182
                      +SF W   D L +I   K R R + N+ +
Sbjct: 1070 RAH------FISFPWCVYDQLIQIKKDKARNRPVLNLSS 1102


>gi|113205271|gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 389/1005 (38%), Positives = 558/1005 (55%), Gaps = 82/1005 (8%)

Query: 206  LVKQY-SEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSG-- 262
            +VK++ S F    +  QL  +PR++ R  +        F     DD W+RTTDFTPS   
Sbjct: 1    MVKEHLSVFQIYNLGGQLFGAPRIYKRLENS----CYSFFKETPDDQWVRTTDFTPSWIG 56

Query: 263  -AIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFC 321
             +   C  +R  +   H     +   +  ER   +   +       +    VP   P   
Sbjct: 57   LSSSLCLQFRRGV---HLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQP--- 110

Query: 322  IHYEEGIS--FEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNV--AALKHIYSYK 377
                EGI+  ++I+F +++++  G I    L+  FF L+  Q R V     AL+ +Y  K
Sbjct: 111  ---PEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLK 167

Query: 378  WPVFDACKRLKLVQEWLLKDPELYKGPK-QIDD-IVEVRRLVITPTKAYCLPPEVELSNR 435
               +D  + L    +  LK  +  K P   +DD +V VRR+++TP K Y   PEV +SNR
Sbjct: 168  ECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNR 227

Query: 436  VLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSIL 495
            VLR Y +  D FLRV+F+DE  + + +  L      + +  T N    +T +++R+ S L
Sbjct: 228  VLRNYSEDIDNFLRVSFVDEEWEKLYSTEL------LPKASTGNGI--RTNIYERILSTL 279

Query: 496  SGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARM 554
              GF +  +KF FLAFSSSQLRD S W F+     +  DI+ WMG F+  KN+AK AAR+
Sbjct: 280  RKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARL 339

Query: 555  GQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQKLKLDVNPP 612
            GQ F S+  T+ V   E++  +PD+K +G  YVFSDGIGKI+ D A  VA K  L   P 
Sbjct: 340  GQSFGSSRETLSVLRHEIE-VIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQYTP- 397

Query: 613  PCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQI 672
              A+QIRY G KGVVA  P     +++SLR+SM+K++S +  L++  W+++QP +LNRQ+
Sbjct: 398  -SAFQIRYGGYKGVVAVDPYSS--MKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQL 454

Query: 673  ITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT-AACAEQGNTAAIMLSAGFN 731
            +TLLSTL V D++    Q   + +L+ +L DS  A E L   +  E  N    ML+ G+ 
Sbjct: 455  VTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYM 514

Query: 732  PQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFL 791
            P  EP L  ML   RA++L  LR ++RIF+P GR +MGCLDE   LE GQ F+Q    F 
Sbjct: 515  PDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQ----FT 570

Query: 792  GNC---FSKHGSRFAETKKLQ---VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDC 845
            G     FS+    F  ++      ++KG VV+AKNPCLHPGDIR+L AVD P LHH+ DC
Sbjct: 571  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 630

Query: 846  LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQ 905
            +VFPQKG RPH NE SGSDLDGD+YFV WD+++IPP +     MEY  A +  L   V  
Sbjct: 631  VVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQ--AMEYPPAPSIQLDHNVTI 688

Query: 906  RDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT 965
             ++ E+F  ++VN++LG I NAHVV AD     A+ + C  LAEL + AVDFPKTG    
Sbjct: 689  EEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAE 748

Query: 966  MPAHLKPKLYPDFMGKEAYQ-SYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDI--- 1021
            +P+ L+PK YPDFM K   + +Y S +++G+L+R+ KD   +    +S + I   D+   
Sbjct: 749  IPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQ----ASSIAIFTRDVARR 804

Query: 1022 HYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQ 1081
             YD DLEV    D+I +A++ K  YD +L  L++ Y +  E E+++G I    K   R++
Sbjct: 805  SYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRK 864

Query: 1082 GELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPE-WVK 1140
                E +  +  ALRKE R  F++ +   ++L           KASAWY VTYHP  W  
Sbjct: 865  D--AEAISVAVRALRKEARTWFKRRNDIDDMLP----------KASAWYHVTYHPTYWGC 912

Query: 1141 KSLDLQEQDSARSVVLLSFAWIANDYLARI---KIRCREMANIDT 1182
             +  L+          +SF W   D L +I   K R R + N+ +
Sbjct: 913  YNQGLKRDH------FISFPWCVYDQLIQIKKEKARNRPVLNLSS 951


>gi|142942515|gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 392/1018 (38%), Positives = 559/1018 (54%), Gaps = 90/1018 (8%)

Query: 163  VDPFDG-TCKF-CFTRDIAFALKSSTEHAVI---------------KCEFKVEFLVREIN 205
            VD  DG T  F C   D  FA+  STE ++                  ++K++     I 
Sbjct: 91   VDHMDGITLNFGCQISDDKFAVLGSTEVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIW 150

Query: 206  LVKQYSEFSCVA--ILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSG- 262
             V  +  +   A  +L+QL  +PR++ R  +        F     DD W+RTTDF PS  
Sbjct: 151  QVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS----CYSFFKETPDDQWVRTTDFAPSWI 206

Query: 263  --AIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFF 320
              +   C  +R  +   H     +   +  ER   +   +       +    VP   P  
Sbjct: 207  GLSSSLCLQFRRGV---HLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQP-- 261

Query: 321  CIHYEEGIS--FEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNV--AALKHIYSY 376
                 EGI+  ++I+F +++++  G I    L+  FF L+  Q R V     AL+ +Y  
Sbjct: 262  ----PEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQRRNVACIEQALEKLYYL 317

Query: 377  KWPVFDACKRLKLVQEWLLKDPELYKGPK-QIDD-IVEVRRLVITPTKAYCLPPEVELSN 434
            K   +D  + L    +  LK  +  K P   +DD +V VRR+++TP K Y   PEV +SN
Sbjct: 318  KECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 377

Query: 435  RVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSI 494
            RVLR Y +  D FLRV+F+DE  + + +  L      + +  T N    +T +++R+ S 
Sbjct: 378  RVLRNYSEDIDNFLRVSFVDEEWEKLYSTEL------LPKASTGNGI--RTNIYERILST 429

Query: 495  LSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAAR 553
            +  GF +  +KF FLAFSSSQLRD S W F+     +  DI+ WMG F+  KN+AK AAR
Sbjct: 430  MQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAAR 489

Query: 554  MGQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQKLKLDVNP 611
            +GQ F S+  T+ V   E++  +PD+K +G  YVFSDGIGKI+ D A  VA K  L   P
Sbjct: 490  LGQSFGSSKETLSVLRHEIE-VIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQYTP 548

Query: 612  PPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQ 671
               A+QIRY G KGVVA  P     +++SLR+SM+K++S +  L++  W+++QP +LNRQ
Sbjct: 549  --SAFQIRYGGYKGVVAVDPYSS--MKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQ 604

Query: 672  IITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT-AACAEQGNTAAIMLSAGF 730
            +ITLLSTL V D++    Q   + +L+ +L DS  A E L   +  E  N    ML+ G+
Sbjct: 605  LITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGY 664

Query: 731  NPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPF 790
             P  EP L  ML   RA++L  LR K+RIF+P GR +MGCLDE   LE GQ F+Q    F
Sbjct: 665  MPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQ----F 720

Query: 791  LGNC---FSKHGSRFAETKKLQ---VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD 844
             G     FS+    F  ++      ++KG VV+AKNPCLHPGDIR+L AVD P LHH+ D
Sbjct: 721  TGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVD 780

Query: 845  CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVD 904
            C+VFPQKG RPH NE SGSDLDGD+YFV WD+++IPP +    PMEY  A +  L   V 
Sbjct: 781  CVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQ--PMEYPPAPSIQLDHDVT 838

Query: 905  QRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIV 964
              ++ E+F  ++VN++LG I NAHVV AD     A+ + C  LAEL + AVDFPKTG   
Sbjct: 839  IEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPA 898

Query: 965  TMPAHLKPKLYPDFMGKEAYQ-SYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDI-- 1021
             +P+  +PK YPDFM K   + +Y S +++G+LYR+ KD   +    +S   I   D+  
Sbjct: 899  EIPSQWRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQ----ASSTAIFTRDVAR 954

Query: 1022 -HYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRK 1080
              YD DLEV    D+I +A++ K  YD +L  L++ Y +  E E+++G I    K   R+
Sbjct: 955  RSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRR 1014

Query: 1081 QGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEW 1138
            +    E +  +  ALRKE R  F++ +   ++L           KASAWY VTYHP +
Sbjct: 1015 KD--AEAISIAVRALRKEARTWFKRRNDIDDMLP----------KASAWYHVTYHPTY 1060


>gi|224099569|ref|XP_002311535.1| rna-dependent RNA polymerase [Populus trichocarpa]
 gi|222851355|gb|EEE88902.1| rna-dependent RNA polymerase [Populus trichocarpa]
          Length = 1139

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 370/955 (38%), Positives = 532/955 (55%), Gaps = 87/955 (9%)

Query: 247  DDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKL--------------SKVITYLGER 292
            D DD W+R  DF+PS  IG+ ++  + +     G+L               +    +G  
Sbjct: 213  DTDDQWVRDVDFSPSYCIGQSSALCLELP--RSGQLPNFQENFPCYKEDEGRFFLEVGST 270

Query: 293  RVQVDSLSRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSD 352
              +V  L  PI +RE    E+P               ++I+F VN+++  G +    L  
Sbjct: 271  FCRVSDLV-PI-LREAQGIELP---------------YDIVFKVNSLVQHGYLPGPALDA 313

Query: 353  SFFDLLRGQSREVNVA----ALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPK-QI 407
            SF+ L+      VN+A    AL+ ++      +D  + L+      +    L   P   +
Sbjct: 314  SFYRLI--NPSRVNIAHIQNALEKLHHSMECCYDPVRWLREEYRKCISTGRLPTPPAVAV 371

Query: 408  DD-IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLS 466
            DD +V VRR+ ITPTK Y   PEV LSNRVLRKY D  D FLRV+F+DE L  + +    
Sbjct: 372  DDGLVHVRRVQITPTKVYFRGPEVNLSNRVLRKYPDDIDNFLRVSFVDEDLDKLFST--- 428

Query: 467  YFIAPIVRDITLNSFS----QKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAW 522
                    +I+  +FS    ++T++++R+ S    G  +  +KF FL FSSSQLR+ S W
Sbjct: 429  --------NISPRTFSAIEGRQTKIYQRILSTQRNGIVIGSKKFEFLGFSSSQLRESSLW 480

Query: 523  FFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK- 580
             F+        DI++WMG F + KN+AK AAR+GQ F S+  +  +   E++ ++PDI+ 
Sbjct: 481  MFASRTGLRAADIRRWMGDFREIKNVAKYAARLGQSFGSSRESFNIDEKEIE-KIPDIEV 539

Query: 581  RNG---YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGI 637
            R+G   YVFSDGIGKI+  LA  +AQK    ++  P A+QIRY G KGVVA  P      
Sbjct: 540  RSGGVDYVFSDGIGKISAALAHSIAQKFGF-LSFTPSAFQIRYGGYKGVVAVDPTSLK-- 596

Query: 638  RMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKL 697
            ++SLR SM+K++S +T+L+I  W+++Q  +LNR++ITLLSTL V D +F   Q   +++L
Sbjct: 597  KLSLRRSMSKYKSTNTSLDILGWSKYQACYLNREVITLLSTLGVRDHIFQRKQKEAIAQL 656

Query: 698  NQMLVDSDVAFEVLT-AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREK 756
            N +L D   A E L   A  E  N    ML+ G+ P  EP L  ML    A++L  LR +
Sbjct: 657  NAILTDPSSAQEALELMAPGESTNVLKEMLACGYKPGAEPFLAMMLQTFCASKLLDLRTR 716

Query: 757  ARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVV 816
            ARIF+P GR +MGCLDE   L  GQ F+Q S    G  F  H       +  Q++KG ++
Sbjct: 717  ARIFIPKGRAMMGCLDETRTLGYGQAFVQYSSARHGQ-FRDHSRGGEAVRNTQILKGKLI 775

Query: 817  IAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE 876
            +AKNPCLHPGD+R+LEAV+ P LHH+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD 
Sbjct: 776  VAKNPCLHPGDVRVLEAVNVPALHHMVDCIVFPQKGKRPHANECSGSDLDGDVYFVCWDP 835

Query: 877  NLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSE 936
            +LIPP  +++PPM+Y AA    L   V   ++ E+F  +++N++LG ICNAH V AD   
Sbjct: 836  DLIPP--RTFPPMDYTAAPTTILDHDVTIEEVQEYFTDYLLNDSLGIICNAHTVFADRDP 893

Query: 937  YGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEA-YQSYKSNKILGR 995
              A  + CI LA L++ AVDFPKTG    +P  L+ K YPDFM K A  ++Y+S ++LG+
Sbjct: 894  LMARSKECIELARLSSIAVDFPKTGVPAKIPRELRVKEYPDFMEKAADKRTYESQRVLGK 953

Query: 996  LYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLE 1055
            L+R  +D    D S             YD D+EV      I +A++ K  YD +L  +++
Sbjct: 954  LFRDVRDI-APDTSPVRSFTKEMARRSYDPDMEVDGFQKHIDEAFHYKSVYDNKLGNMMD 1012

Query: 1056 QYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSE 1115
             Y +  E E+++G I  + K   +K+    + + +S  +LRK+ R  F++ D+     S 
Sbjct: 1013 YYGIKTEAEIISGSIMKVGKSFDKKRD--FDSINYSIRSLRKQARAWFDESDN-----SP 1065

Query: 1116 DEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARI 1170
            D+  A    KASAWY VTYHP +  +       +    V  LSF W   D L  I
Sbjct: 1066 DDLYA----KASAWYYVTYHPSYWGRY-----NEGMNRVHFLSFPWCFYDKLIDI 1111


>gi|113205254|gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 382/975 (39%), Positives = 542/975 (55%), Gaps = 78/975 (8%)

Query: 221  QLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSG---AIGRCNSYRISISSR 277
            +L  +PR++ R  +        F     DD W+RTTDF PS    +   C  +R  +   
Sbjct: 17   RLFGAPRIYKRLENS----CYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGV--- 69

Query: 278  HRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFCIHYEEGIS--FEIMFL 335
            H     +   +  ER   +   +       +    VP   P       EGI+  ++I+F 
Sbjct: 70   HLPNFQEKFFHYAERENNITLQTGFTFFISQKSSLVPNVQP------PEGIAIPYKILFK 123

Query: 336  VNAVMHKGIINQHQLSDSFFDLLRGQSREVNV--AALKHIYSYKWPVFDACKRLKLVQEW 393
            +++++  G I    L+  FF L+  Q R V     AL+ +Y  K   +D  + L    + 
Sbjct: 124  ISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDG 183

Query: 394  LLKDPELYKGPK-QIDD-IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVT 451
             LK  +  K P   +DD +V VRR+++TP K Y   PEV +SNRVLR Y +  D FLRV+
Sbjct: 184  YLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVS 243

Query: 452  FMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAF 511
            F+DE  + + +  L      + +  T N    +T +++R+ S L  GF +  +K  FLAF
Sbjct: 244  FVDEEWEKLYSTEL------LPKASTGNGI--RTNIYERILSTLRKGFVIGDKKIEFLAF 295

Query: 512  SSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPT 570
            SSSQLRD S W F+     +  DI+ WMG F+  KN+AK AAR+GQ F S+  T+ V   
Sbjct: 296  SSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRH 355

Query: 571  EVDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVA 628
            E++  +PD+K +G  YVFSDGIGKI+ D A  VA K  L   P   A+QIRY G KGVVA
Sbjct: 356  EIE-VIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQYTP--SAFQIRYGGYKGVVA 412

Query: 629  CWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWS 688
              P     +++SLR+SM+K++S +  L++  W+++QP +LNRQ+ITLLSTL V D++   
Sbjct: 413  VDPYSS--MKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLITLLSTLGVKDDVLEQ 470

Query: 689  MQDSMLSKLNQMLVDSDVAFEVLT-AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRA 747
             Q   + +L+ +L DS  A E L   +  E  N    ML+ G+ P  EP L  ML   RA
Sbjct: 471  KQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRA 530

Query: 748  AQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNC---FSKHGSRFAE 804
            ++L  LR K+RIF+P GR +MGCLDE   LE GQ F+Q    F G     FS+    F  
Sbjct: 531  SKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQ----FTGAGHREFSEDLHPFNN 586

Query: 805  TKKLQ---VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEAS 861
            ++      ++KG VV+AKNPCLHPGDIR+L AVD P LHH+ DC+VFPQKG RPH NE S
Sbjct: 587  SRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECS 646

Query: 862  GSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENL 921
            GSDLDGD+YFV WD+++IPP +    PMEY  A +  L   V   ++ E+F  ++VN++L
Sbjct: 647  GSDLDGDIYFVCWDQDMIPPRQVQ--PMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSL 704

Query: 922  GTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGK 981
            G I NAHVV AD     A+ + C  LAEL + AVDFPKTG    +P+ L+PK YPDFM K
Sbjct: 705  GIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPSQLRPKEYPDFMDK 764

Query: 982  EAYQ-SYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDI---HYDTDLEVPESVDFIA 1037
               + +Y S +++G+L+R+ KD   +    +S   I   D+    YD DLEV    D+I 
Sbjct: 765  PPDKTTYISERVIGKLFRKVKDKAPQ----ASSTAIFTRDVARRSYDADLEVDGFEDYID 820

Query: 1038 DAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRK 1097
            +A++ K  YD +L  L++ Y +  E E+++G I    K   R++    E +  +  ALRK
Sbjct: 821  EAFDYKTEYDSKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKD--AEAISIAVRALRK 878

Query: 1098 EFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPE-WVKKSLDLQEQDSARSVVL 1156
            E R  F++ +   ++L           KASAWY VTYHP  W   +  L+          
Sbjct: 879  EARTWFKRHNDIDDMLP----------KASAWYHVTYHPTYWGCYNQGLKRDH------F 922

Query: 1157 LSFAWIANDYLARIK 1171
            +SF W   D L +IK
Sbjct: 923  ISFPWCVYDQLIQIK 937


>gi|146762448|gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  594 bits (1531), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 393/1068 (36%), Positives = 579/1068 (54%), Gaps = 113/1068 (10%)

Query: 135  VCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCE 194
            V V  G  VS ++F+V W+      +F      GT      R + F L      +    +
Sbjct: 99   VTVNFGCQVSEEKFYVLWKADNVTLNF------GTG----MRKLEFLL------SYCSSK 142

Query: 195  FKVEFL---VREINLVKQYSEFSCVAILLQLASSPRVWYRTAD------DDILVLVPFDM 245
            +K+E     + +I L   +S+ S   +L+QL  +PR++ +         DD L+    DM
Sbjct: 143  YKLELFYENIWQIELRCPHSQTS-KHLLIQLFGAPRIYEKEVPASECVFDDPLLNYFKDM 201

Query: 246  LDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKV---ITYLGERRVQVDSLSRP 302
               DD W+RTTDFT S  IG+ +   + +   H  +L        Y  E   +       
Sbjct: 202  --PDDQWVRTTDFTRSNCIGQSSVLWLELP--HNLQLPNFRENFAYYKENEGR------- 250

Query: 303  ITIREEPDFEVPMS-DPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLL--- 358
            + +     +   +S  P  C      + FEI+F VN ++  G I    L D+F+ L+   
Sbjct: 251  LVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPC 310

Query: 359  RGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKD------PELYKGPKQI---DD 409
            R     ++  AL+ +Y  +   ++  +       WL ++         Y+G   I   + 
Sbjct: 311  RMHKVYID-HALEKLYYLRECCYEPSR-------WLFEEYKNFSRSRKYQGSPTISLDEG 362

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
            +V VRR+ ITP++ Y   PE+ +SNRVLR++ +  D FLR++F+DE L+ +++       
Sbjct: 363  LVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHST------ 416

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGK 529
                    + +  ++T ++KR+ S L  G  +  ++F FLAFSSSQLR+ SAW F+    
Sbjct: 417  -------NVQARGRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKG 469

Query: 530  TSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK--RNG--Y 584
             +  DI+ WMG F+  +N+AK AAR+GQ FSS+  T+ V   E++  +PDI+  ++G  Y
Sbjct: 470  LTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINL-IPDIEIMKDGIKY 528

Query: 585  VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
            VFSDGIGKI+ + A +VA K +L     P A+QIR  G KGVVA  P      ++SLR+S
Sbjct: 529  VFSDGIGKISAEFAKKVAAKCRLK-GCTPSAFQIRIGGFKGVVAIDPT--SSWKLSLRKS 585

Query: 645  MNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDS 704
            M K++S +T L++ +W+++QP FLNRQ+ITLLSTL VPD  F   Q  ++ +LN +L D 
Sbjct: 586  MEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDP 645

Query: 705  DVAFEVLT-AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA 763
              A E L   +  E  N    ML  G+ P  EP L  ML   RA++L  LR KARIFV  
Sbjct: 646  LEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQK 705

Query: 764  GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCL 823
            GR +MGCLDE   L  GQ F+Q S           GSR   +++  +++G V++AKNPCL
Sbjct: 706  GRSMMGCLDETRTLNYGQVFVQFS-----------GSR---SERRFIVQGKVIVAKNPCL 751

Query: 824  HPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSK 883
            HPGD+R+L AV+ P+LHH+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD  LIP   
Sbjct: 752  HPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIP--Y 809

Query: 884  KSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDEN 943
            K   PM+Y+ A    L   V   +I E+F  ++VN++LG I NAH   AD     A+   
Sbjct: 810  KQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRP 869

Query: 944  CILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDA 1003
            C+ LA+L + AVDFPKTG    +P  L+ K YPDFM K    SY+S+ ++G+L+R+ K+ 
Sbjct: 870  CLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNL 929

Query: 1004 YDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREE 1063
               + S+   +    +   YD D+EV    D+I DA+  K  YD +L  L++ Y V  E 
Sbjct: 930  APNECSIKF-LTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEA 988

Query: 1064 ELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFE 1123
            E++ G I  M +  ++K+    E +  +  +LRKE R  F +  S+   L E+  +A   
Sbjct: 989  EILGGGIMKMSRSFTKKRD--AEAISMAVRSLRKEARSWFNEKGSE---LDEEIDDAY-- 1041

Query: 1124 RKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
             KASAWY VTYHP +  +  +   +D       LSF W   D L +IK
Sbjct: 1042 AKASAWYYVTYHPSYWGQYNEGMNRDH-----FLSFPWCVYDKLIQIK 1084


>gi|224111420|ref|XP_002315849.1| rna-dependent RNA polymerase [Populus trichocarpa]
 gi|222864889|gb|EEF02020.1| rna-dependent RNA polymerase [Populus trichocarpa]
          Length = 1102

 Score =  592 bits (1527), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 395/1072 (36%), Positives = 579/1072 (54%), Gaps = 85/1072 (7%)

Query: 123  RGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFAL 182
            R    T + + ++ +  G  VS+++F V W        F V+           R   F L
Sbjct: 92   RKAFQTQYSMDNITLHFGCQVSKEKFSVLWTQKDVSVKFGVE----------LRKFHFFL 141

Query: 183  KSSTEHAVIKCEFKVEF---LVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILV 239
               +++  ++  ++  F   L R     K+Y       +L+Q+   P+++ +    D   
Sbjct: 142  THLSKNYKLELSYENIFQIELHRPRGKTKKY-------LLVQMLGGPKIFKK----DTSK 190

Query: 240  LVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISI--SSRHRGKLSKVITYLGERRVQVD 297
            L  F    DD  WIR  DF+PS  IG+ ++  + +  +S+        + Y  +    + 
Sbjct: 191  LSNFKEATDDQ-WIRDVDFSPSYCIGQSSALCLELPPNSQLPNFQENFVCYKEDEGHFI- 248

Query: 298  SLSRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDL 357
             L +  T   + D       P         + ++I+F VN+++  G +    L   FF L
Sbjct: 249  -LEKGSTFCCKSDLV-----PILSAAQVSELPYDIVFKVNSLVQHGCLPGPALDARFFRL 302

Query: 358  LRGQSREVNVAALKH----IYSYKWPVFDACKRLKLVQEWLLKDPELYKGPK-QIDD-IV 411
            +      +  A ++H    +   K   +D  + L+   +  L    L   P   +DD +V
Sbjct: 303  INPSKIRIAHAYIQHALEKLSHLKECCYDPARWLREQYQKYLTTGRLPTPPAIAVDDGLV 362

Query: 412  EVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTM-NANVLSYFIA 470
             +RR+ ITPTK Y   P+V LSNRVLRKY    D FLRV+F+DE L  + +AN+     +
Sbjct: 363  FLRRVQITPTKLYFCGPDVNLSNRVLRKYPGDIDNFLRVSFVDEDLDKLFSANISPRTFS 422

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKT 530
             I          ++T +++R+ S+   G  +  +KF FL FS SQ+R+ S W F+     
Sbjct: 423  AIE--------GRQTNIYQRILSVQRNGITIGSKKFEFLGFSQSQVRESSLWMFASRPGL 474

Query: 531  SVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDI--KRNG--YV 585
            +  DI++WMG F + KN+AK AAR+GQ FSS+  +  +   E++  +PDI  K  G  YV
Sbjct: 475  TAADIREWMGDFREIKNVAKYAARLGQSFSSSRESFNIDRHEIEI-IPDIEVKSGGVNYV 533

Query: 586  FSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESM 645
            FSDGIGKI+ +LA  +A+KL+L  +  P A+QIRY G KGVVA  P     +++SLR SM
Sbjct: 534  FSDGIGKISAELADSIARKLRLR-SFTPSAFQIRYGGYKGVVAVDPT--SSMKLSLRRSM 590

Query: 646  NKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSD 705
            +K++S +T+L+I  W++++  FLNR++I LLSTL V D++F   Q   +++L+ +L D  
Sbjct: 591  SKYKSTNTSLDILDWSKYRACFLNREVIILLSTLGVKDQVFERKQKEAIAQLDAILTDPI 650

Query: 706  VAFEVLT-AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAG 764
             A E L   A  E       ML+ G+ P  EP L  ML   RA +L  LR K+RIFVP G
Sbjct: 651  KAQEALELMAGGENARVLNGMLACGYKPGAEPFLAMMLETFRALKLLDLRTKSRIFVPNG 710

Query: 765  RWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQ---VIKGFVVIAKNP 821
            R + GCLDE   LE GQ F+Q S   L    SK    F   K  Q   +++G +V+AKNP
Sbjct: 711  RAMTGCLDETRTLEYGQAFVQYSRARL----SKSHDHFKGGKTDQHTLIVRGKIVVAKNP 766

Query: 822  CLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
            CLHPGD++IL+AVD P LHH+ DC+VFPQKG RPHTNE SGSDLDGD+YFV WD +LIPP
Sbjct: 767  CLHPGDVQILKAVDVPALHHMVDCIVFPQKGKRPHTNECSGSDLDGDVYFVCWDTDLIPP 826

Query: 882  SKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALD 941
             K  +PPM+Y A +   L   V   ++ E+FA +++N++LG IC AHVV AD     A  
Sbjct: 827  QK--FPPMDYTAPQTTILDHDVTIEEVQEYFADYLLNDSLGIICTAHVVFADSEPDMARS 884

Query: 942  ENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQ--SYKSNKILGRLYRQ 999
            E CI LA+L++ AVDFPKTG    +P  L+ K YPDFM K AY+  +Y S ++LG+L+R 
Sbjct: 885  EKCIELAQLSSIAVDFPKTGVPAKIPKELRVKEYPDFMEKAAYKHTTYVSQRVLGKLFRA 944

Query: 1000 SKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKV 1059
             +D    D S             YD D+EV    D+I +A+  K  YD +L  +++ Y +
Sbjct: 945  VRDI-APDTSPVRPFTKEAAKRSYDPDMEVDGFKDYINEAFYYKSEYDNKLGNMMDYYGI 1003

Query: 1060 NREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKN 1119
              E E++ G I  M +   +K+    E +  S S+LRK+ R  F       E  S++  +
Sbjct: 1004 KTEAEIIGGCIMRMGRSFDKKKD--LEGINFSVSSLRKQARAWFN------ESGSKESPD 1055

Query: 1120 ALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
             ++ RKASAWY VTYHP +      L  +   R V  LSF W  +D L  IK
Sbjct: 1056 DVY-RKASAWYHVTYHPRF----WGLYNEGMDR-VHFLSFPWCVHDKLFEIK 1101


>gi|157152684|gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
 gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
          Length = 1117

 Score =  590 bits (1520), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 379/997 (38%), Positives = 557/997 (55%), Gaps = 73/997 (7%)

Query: 218  ILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSR 277
            +LLQL+ +PR++ R  D        F     DD W+RTTDFTPS  IG  +S  +   + 
Sbjct: 166  LLLQLSGAPRIYKRLEDS----CYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFHNG 220

Query: 278  HR-GKLSKVITYLGERRVQVD-SLSRPITIREEPDFEVPMSDPFFCIHYEEGIS--FEIM 333
             R    S+   Y  E   QV        +  ++    VP+      +H  EGI   ++I+
Sbjct: 221  VRLPNFSESFFYYKESANQVILQTGFTFSFSQKKLALVPI------VHLPEGIELPYKIL 274

Query: 334  FLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKH----IYSYKWPVFDACKRLKL 389
            F +++++  G      L+ +FF L+  + R  N+A ++H    +Y  K   +D  + L  
Sbjct: 275  FKISSLIQHGCFPGLALNFNFFQLVDPRRR--NIACIEHALEKLYYLKECCYDPVRWLTE 332

Query: 390  VQEWLLKDPELYKGPK-QIDD-IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRF 447
              +  LK  +L K P   +DD +V VRR+++TP K Y   PEV +SNRVLR Y +  D F
Sbjct: 333  QYDEYLKRRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 392

Query: 448  LRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFS 507
            LRV+F+DE  + +++  L      + R  T N    +T ++ R+ S L  GF +  +KF 
Sbjct: 393  LRVSFVDEEWEKIHSTDL------LPRASTGNGV--RTDIYLRILSTLRNGFVIGDKKFE 444

Query: 508  FLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVE 566
            FLAFSSSQLRD S W F+     +  DI+ WMG F   +N+AK AAR+GQ F S+  T+ 
Sbjct: 445  FLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLS 504

Query: 567  VPPTEVDPELPDI----KRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAG 622
            V   EV+  +PD+        Y+FSDGIGKI+ D A  VA K  L   P    +QIRY G
Sbjct: 505  VGRHEVE-VIPDVVCSLHGTNYIFSDGIGKISADFARRVAVKCGLQYTP--SCFQIRYGG 561

Query: 623  CKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVP 682
             KGVVA  P     +++SLR SM K++S++  L++  W+++QP +LNRQ++TLLSTL V 
Sbjct: 562  YKGVVAVDPYSS--MKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVK 619

Query: 683  DEMFWSMQDSMLSKLNQMLVDSDVAFEVLT-AACAEQGNTAAIMLSAGFNPQTEPHLRGM 741
            D++F   Q+  + +L+ +L D+  A E L   +  E  N    ML+ G+ P  EP L  M
Sbjct: 620  DDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMM 679

Query: 742  LTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNC---FSKH 798
            L   RA++L  LR ++RIF+P GR +MGCLDE   LE GQ F+Q    F G     F + 
Sbjct: 680  LQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQ----FTGTGRRQFYEE 735

Query: 799  GSRFAETKKLQ---VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRP 855
               F ++       +++G VV+AKNPCLHPGDIR+L AVD P LHH+ DC+VFPQKG RP
Sbjct: 736  SHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRP 795

Query: 856  HTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKH 915
            H NE SGSDLDGD+YFV WD +L+PP  + + PM+Y  A +  L   V   ++ E+F  +
Sbjct: 796  HPNECSGSDLDGDIYFVCWDPDLVPP--RQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNY 853

Query: 916  MVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY 975
            +VN++LG I NAHVV AD     A+ + C  LA+L + AVDFPKTG    +P+ L+PK Y
Sbjct: 854  IVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEY 913

Query: 976  PDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDF 1035
            PDFM K    +Y S K++G+L+++ KD   +  S+++   ++     YD D+ V    D+
Sbjct: 914  PDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIAN-FTMDVARKSYDGDMIVNGFEDY 972

Query: 1036 IADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSAL 1095
            I +A+  K  YD +L  L++ Y +  E E+++G I    K   R++    + +  +  +L
Sbjct: 973  IDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKD--ADAIGVAVRSL 1030

Query: 1096 RKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVV 1155
            RKE R  F++     ++L+          KASAWY VTYH  +     +  ++D      
Sbjct: 1031 RKEARTWFKRRSDIDDMLA----------KASAWYHVTYHHTYWGFYNEGLKRDH----- 1075

Query: 1156 LLSFAWIANDYLARI-KIRCREMANIDTSKPVNYLAR 1191
             +SF W   D L +I K + R+   +  S   N L+R
Sbjct: 1076 FISFPWCIYDQLIQIKKAKARKKPVLHLSSLGNQLSR 1112


>gi|224099571|ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
 gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase [Populus trichocarpa]
          Length = 1133

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 389/1061 (36%), Positives = 561/1061 (52%), Gaps = 68/1061 (6%)

Query: 132  LPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVI 191
            +  V +  G   S+++F   W G     +F +            R + F L  +      
Sbjct: 97   MESVTLHFGYQTSKEKFSAVWSGNNVSVNFGLG----------MRKLHFFLSHNL----- 141

Query: 192  KCEFKVEFLVREINLVKQYSEFSCVA--ILLQLASSPRVWYRTADDDILV----LVPFDM 245
              E+K+  L   I  ++ +         +L+QL  +PR++ R       V    L+ +  
Sbjct: 142  -AEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIYERDVPSSSNVFEDPLLNYFR 200

Query: 246  LDDDDPWIRTTDFTPSGAIGRCNSYRISISSR-HRGKLSKVITYLGERRVQVDSLSRPIT 304
               D+ W+RTTDFTPS  IG  +S  + + +       ++   Y  E       L   +T
Sbjct: 201  DVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNENFFYYKENEGTF-VLESGLT 259

Query: 305  IREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSRE 364
                PD  VP+  P   ++    + + I+F VN ++  G +    L D F+ L+      
Sbjct: 260  FSRNPDL-VPIVGPSSGVN----LPYNILFRVNLLVQNGCLAGSMLDDIFYRLVDPNRMP 314

Query: 365  VNVA--ALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDD--IVEVRRLVITP 420
            V     AL+ +Y  K   ++  K      +  L      + P    D  +V V ++ ITP
Sbjct: 315  VRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLSLDAGLVYVYKVQITP 374

Query: 421  TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
             K +   PEV +SNRVLR+Y++  D FLRV+F+DE L+ +++  +S       R  + N 
Sbjct: 375  CKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDVS------PRTSSRNE 428

Query: 481  FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540
              ++T ++ R+ S L  G  +  +KF FLAFSSSQLR+ S W F+     +  DI+ WMG
Sbjct: 429  L-RRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAADIRAWMG 487

Query: 541  RFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK--RNG--YVFSDGIGKITP 595
             F   +N+A+ AAR+GQ F S+  T+ V   E++  +PDI+  R G  Y+FSDGIGKI+ 
Sbjct: 488  SFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEI-IPDIEVSRGGTRYLFSDGIGKISA 546

Query: 596  DLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTL 655
            + A +VA K        P A+QIRYAG KGVVA  P      ++SLR SM K++S +T L
Sbjct: 547  EFARKVAIKCGCK-GFTPSAFQIRYAGYKGVVAVDPTSSK--KLSLRRSMFKYESENTKL 603

Query: 656  EICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT-AA 714
            ++ + +++QP FLNRQ+ITLLSTL VPD  F   Q   + +L+ ML D   A E L   +
Sbjct: 604  DVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEALELMS 663

Query: 715  CAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDEL 774
              E  N    ML  G+ P  EP L  ML   RA++L  LR K RIF+P GR +MGCLDE 
Sbjct: 664  PGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 723

Query: 775  GVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQ--VIKGFVVIAKNPCLHPGDIRILE 832
              LE GQ F++ S     N +      F+E  + Q  +IKG VV+AKNPCLHPGD+RIL+
Sbjct: 724  RTLEHGQVFVKFSGSRFRNLYDS-SDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLRILK 782

Query: 833  AVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYN 892
            AVD P LHH+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD  LIP  + S  PM+Y 
Sbjct: 783  AVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQIS--PMDYT 840

Query: 893  AAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAA 952
                  L   V   ++ E+F  ++VN++LG I NAH  HAD     A+ E C+ LA   +
Sbjct: 841  PEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKFS 900

Query: 953  TAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSS 1012
             AVDFPKTG    +P++L+ + YPDFM K    SY+S  ++G+L+R+ KD      S+ S
Sbjct: 901  IAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRS 960

Query: 1013 EVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWS 1072
                +     YD D+EV    D+I DA+  K +YD +L  L+E Y +  E EL++G    
Sbjct: 961  FTS-DVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMK 1019

Query: 1073 MPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQV 1132
            M K  ++K+    E +  +  +L+KE R  F +  S  +  ++D      + KASAWY V
Sbjct: 1020 MSKSFTKKRD--AEAIGMAVRSLKKEARSWFNEKGSGLDSQADD-----VDAKASAWYHV 1072

Query: 1133 TYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIR 1173
            TYH  +     +   +D       LSF W   D L +IK R
Sbjct: 1073 TYHHNYWGCYNEGMNRDH-----FLSFPWCVYDKLIQIKRR 1108


>gi|113205257|gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1139

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 398/1067 (37%), Positives = 565/1067 (52%), Gaps = 129/1067 (12%)

Query: 163  VDPFDG-TCKF-CFTRDIAFALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILL 220
            VD  DG T  F C   D  FA+  STE                + L + Y + +   +L+
Sbjct: 118  VDHMDGITLNFGCQISDDKFAVLGSTE----------------VVLHRPYGQ-NAQFLLI 160

Query: 221  QLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSG---AIGRCNSYRISISSR 277
            QL  +PR++ R  +        F     DD W+RTTDF PS    +   C  +R  +   
Sbjct: 161  QLFGAPRIYKRLENS----CYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGV--- 213

Query: 278  HRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFCIHYEEGIS--FEIMFL 335
            H     +   +  ER   +   +       +    VP   P       EGI+  ++I+F 
Sbjct: 214  HLPNFQESFFHYTERENNITLQTGFTFFVSQKSALVPNVQP------PEGIAIPYKILFK 267

Query: 336  VNAVMHKGIINQHQLSDSFFDLLRGQSREVNV--AALKHIYSYKWPVFDACKRLKLVQEW 393
            +++++  G I    L   FF L+  Q R V     AL+ +Y  K   +D  + L    + 
Sbjct: 268  ISSLVQHGCIPGPALDVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDG 327

Query: 394  LLKDPELYKGPK-QIDD-IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVT 451
             LK  +  K P   +DD +V VRR+++TP K Y   PEV +SNRVLR Y +  D FLRV+
Sbjct: 328  YLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVS 387

Query: 452  FMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAF 511
            F+DE  + + +  L      + +  T N    +T +++R+ S L  GF +  +KF FLAF
Sbjct: 388  FVDEEWEKLYSTDL------LPKASTGNGI--RTNIYERILSTLRKGFVIGDKKFEFLAF 439

Query: 512  SSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPT 570
            SSSQLRD S W F+     +  DI+ WMG F+  KN+AK AAR+GQ F S+  T+ V   
Sbjct: 440  SSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRH 499

Query: 571  EVDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVA 628
            E++  +PD+K +G  YVFSDGIGKI+ D A  VA K  L   P   A+QIRY G KGVVA
Sbjct: 500  EIE-VIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQYTP--SAFQIRYGGYKGVVA 556

Query: 629  CWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWS 688
              P     +++SLR+SM+K++S +  L++  W+++QP +LNRQ++TLLSTL V D++   
Sbjct: 557  VDPYSS--MKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQ 614

Query: 689  MQDSMLSKLNQMLVDSDVAFEVLT-AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRA 747
             Q   + +L+ +L DS  A E L   +  E       ML+ G+ P  EP L  ML   RA
Sbjct: 615  KQKEAVDQLDAILHDSLKAQEALELMSPGENTTILKAMLNCGYMPDAEPFLSMMLQTFRA 674

Query: 748  AQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNC---FSKHGSRFAE 804
            ++L  LR ++RIF+P GR +MGCLDE   LE GQ F+Q    F G     FS+    F  
Sbjct: 675  SKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQ----FTGAGHREFSEDLHPFNN 730

Query: 805  TKKLQ---VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKG--------- 852
            ++      ++KG VV+AKNPCLHPGDIR+L AVD P LHH+ DC+VFPQKG         
Sbjct: 731  SRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRLGMYFNC 790

Query: 853  ------------------------DRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPP 888
                                    DRPH NE SGSDLDGD+YFV WD+++IPP  +   P
Sbjct: 791  LPTSEVEVKSAYTLPSSDPTLCFDDRPHPNECSGSDLDGDIYFVCWDQDMIPP--RQVQP 848

Query: 889  MEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLA 948
            MEY  A +  L   V   ++ E+F  ++VN++LG I NAHVV AD     A+ + C  LA
Sbjct: 849  MEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLA 908

Query: 949  ELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDI 1008
            EL + AVDFPKTG    +P+ L+PK YPDFM K    +Y S +++G+L+R+ KD   +  
Sbjct: 909  ELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTTYISERVIGKLFRKVKDKAPQ-- 966

Query: 1009 SVSSEVDINPVDI---HYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEEL 1065
              +S + I   D+    YD DLEV    D+I +A++ K  YD +L  L++ Y +  E E+
Sbjct: 967  --ASSIAIFTRDVARRSYDVDLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEI 1024

Query: 1066 VTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERK 1125
            ++G I    K   R++    E +  +  ALRKE R  F++ +   ++L           K
Sbjct: 1025 LSGGIMKTSKTFDRRKD--AEAISIAVRALRKEARTWFKRRNDIDDMLP----------K 1072

Query: 1126 ASAWYQVTYHPE-WVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
            ASAWY VTYHP  W   +  L+          +SF W   D L +IK
Sbjct: 1073 ASAWYHVTYHPTYWGCYNQGLKRDH------FISFPWCVYDQLIQIK 1113


>gi|302819337|ref|XP_002991339.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
 gi|300140919|gb|EFJ07637.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
          Length = 1134

 Score =  587 bits (1513), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 408/1134 (35%), Positives = 585/1134 (51%), Gaps = 114/1134 (10%)

Query: 78   HAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGRTSTPFKLPDVCV 137
            +AFV FA       A   A    L   GRAL++            +G T  P +  +   
Sbjct: 47   YAFVQFATAEASQLASQLAAENALLFYGRALRIQ---------AHKGVTHGPIRGDE--- 94

Query: 138  EIGTLVSRDEFFVAWRGPA---SGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCE 194
                   R E  V   G A   SG D L        +FCF    +  L    +H  +  +
Sbjct: 95   -------RVEGIVLTMGFARGESGIDCLWSCSGVAAEFCFG---SCQLNLLLQHDGV--D 142

Query: 195  FKVEFLVREINLVKQYSEFSCVA-ILLQLASSPRVWYR----------TADDDILVLVPF 243
            +K+E L R +  V  + E S  + +LLQL   P V+              D  + +L  F
Sbjct: 143  YKLELLFRNLRFVDAFVETSQASHLLLQLFRPPLVFQGLPSPSEQGNPVLDTPLAILRHF 202

Query: 244  DMLDDDD------------PWIRTTDFTPSGAIGR----CNSYRISISSRHRGKLSKVIT 287
              +  +              W R+TDFTP  AI +    C  +   +S     K+SK ++
Sbjct: 203  KAVRANSYNYKYSKFAKEPTWTRSTDFTPGKAISQSLVYCLEFPSDLSDEQALKISKSLS 262

Query: 288  YLGERRVQVDSLSRPITIREEPDFEVPMS-DPFFCIHYEEG--ISFEIMFLVNAVMHKGI 344
                      S+ R +T+     + +     P   I  ++G  + F+I++ +N ++  G 
Sbjct: 263  -----GYDTSSMDRALTLVAGESYALQQELSPILSITEDDGAPLPFDIVYKINFLVQSGY 317

Query: 345  INQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPV-FDACKRLKLVQEWLLKDPELYKG 403
            ++   ++   F LL+G   ++ ++AL  + S    V  DA   ++   +   +  EL + 
Sbjct: 318  MSPASVTRELFTLLQGFPEKLCLSALDKLVSPAGNVSLDAFSTIESYLKCHHRRSELVEP 377

Query: 404  PKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNAN 463
                     V+RLV+TP K YC  PE+E SN V R+YKD A  FLRV+F+DE  +T+ A+
Sbjct: 378  D---GGYTYVKRLVVTPAKVYCTGPELERSNGVTRRYKDFAANFLRVSFVDENFETLYAD 434

Query: 464  VLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF 523
             +     P    + +    + + V+ RV +++  G  + G+KF FL FS+SQLR+ S W 
Sbjct: 435  AVRL---PTKVSVQIGLLPEPSSVYHRVLAVVRDGVTIGGKKFKFLGFSASQLREHSLWM 491

Query: 524  FSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRN 582
            F+  G  +   I+ WMG F    NIAKCAAR+GQ FSS+ +++EV   E+          
Sbjct: 492  FAGAGSVTAESIRAWMGDFGGFTNIAKCAARIGQSFSSSRSSLEVLEDELSSVEDIYCGT 551

Query: 583  GYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLR 642
             Y FSDGIGKI+   A  VA+   + V P   A QIRYAG KGVVA  P      ++SLR
Sbjct: 552  RYCFSDGIGKISKAFATSVARACNMPVVP--SALQIRYAGYKGVVAVDPTCS--TKLSLR 607

Query: 643  ESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLV 702
             SM KF S  T L++   +++ P +LNRQ I L++TL VPDE+F  MQ+  L  L++ML 
Sbjct: 608  PSMLKFPSERTGLDVLKASQYAPYYLNRQSIILMTTLGVPDEVFERMQNEELKILDEMLR 667

Query: 703  DSDVAFEVL--TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIF 760
            D   A EVL  +++  E  +    ML AG+ P  EP LR +L   R+ QL+ LR K+RI+
Sbjct: 668  DPQTAIEVLRSSSSGGEVHSIMVAMLQAGYKPAHEPFLRRLLDNFRSLQLYLLRTKSRIY 727

Query: 761  VPAGRWLMGCLDELGVLEGGQCFIQVS---------EPFLGNCFSKHGSRFAETKKLQVI 811
            VP GR L+GCLDE GVL+ GQ F+QVS         +  L +   + G   +E+    V+
Sbjct: 728  VPKGRCLLGCLDETGVLDYGQVFVQVSPTPGTRRVVDDGLDDARPRRGVTRSESA--CVV 785

Query: 812  KGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYF 871
             G VV+ KNPCLHPGD+ +LEAVD P LHH+ DC+VFPQ+G RPH NE SGSDLDGDLYF
Sbjct: 786  LGKVVVTKNPCLHPGDLLVLEAVDVPGLHHMIDCVVFPQRGKRPHPNECSGSDLDGDLYF 845

Query: 872  VTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVH 931
            VTWD++L+PP      PM+Y    A  L   V   +I +FF   MV+++LG I NAH+VH
Sbjct: 846  VTWDKSLVPPVTHE--PMDYEPGTAAKLDHSVTLEEIQQFFVDSMVHDSLGVISNAHLVH 903

Query: 932  ADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNK 991
            AD     A D  C+ LA LA+TAVDF KTG    +P  L+P+ YPDFM  E   +Y S  
Sbjct: 904  ADKELERAKDPKCLELARLASTAVDFAKTGIPAVIPVDLRPRDYPDFMENEFKSTYTSQS 963

Query: 992  ILGRLYRQSKDAYDEDISVSSEVDINP--VDIHYDTDLEVPESVDFIADAWNQKCSYDGQ 1049
            +LG+LYR  +         SS V  +P  +D  +D  L V      +A+A   K  YD +
Sbjct: 964  VLGKLYRSLQSNGRIFSQRSSAVAASPKEMDEEFDRSLIVDGYEQHVAEARLLKELYDTK 1023

Query: 1050 LNGLLEQYKVNREEELVTGHIWSMPKYNSR-KQGELKERLKHSYSALRKEFRQVFEKMDS 1108
            L  LL  Y++  E E+VTG++  + K N + K+ + ++R+  +  +L KE  + FE   +
Sbjct: 1024 LERLLRHYEIT-EAEIVTGNVLCLGKANEKTKRNDTRDRIACAMKSLAKEAGRWFEAGLN 1082

Query: 1109 DCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWI 1162
            + +L            KA AWY VTYHPE+ K S          +V  LSF W+
Sbjct: 1083 EHQL-----------AKACAWYHVTYHPEFRKGS----------NVESLSFPWV 1115


>gi|90823307|gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 391/1068 (36%), Positives = 577/1068 (54%), Gaps = 113/1068 (10%)

Query: 135  VCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCE 194
            V V     VS ++F+V W+      +F      GT      R + F L      +    +
Sbjct: 99   VTVNFDCHVSEEKFYVLWKADNVTLNF------GTG----MRKLEFLL------SYCSSK 142

Query: 195  FKVEFL---VREINLVKQYSEFSCVAILLQLASSPRVWYRTAD------DDILVLVPFDM 245
            +K+E     + +I L   +S+ S   +L+QL  +PR++ +         DD L+    DM
Sbjct: 143  YKLELFYENIWQIELRCPHSQTS-KHLLIQLFGAPRIYEKEVPASECVFDDPLLNYFKDM 201

Query: 246  LDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKV---ITYLGERRVQVDSLSRP 302
               DD W+RTTDFT S  IG+  S  + +   H  +L        Y  E   +       
Sbjct: 202  --PDDQWVRTTDFTRSNCIGQ--SSVLCLELPHNLQLPNFRENFAYYKENEGR------- 250

Query: 303  ITIREEPDFEVPMS-DPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLL--- 358
            + +     +   +S  P  C      + FEI+F VN ++  G I    L D+F+ L+   
Sbjct: 251  LVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPC 310

Query: 359  RGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKD------PELYKGPKQI---DD 409
            R     ++  AL+ +Y  +   ++  +       WL ++         Y+G   I   + 
Sbjct: 311  RMHKVYID-HALEKLYYLRECCYEPSR-------WLFEEYKNFSRSRKYQGSPTISLDEG 362

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
            +V VRR+ ITP++ Y   PE+ +SNRVLR++ +  D FLR++F+DE L+ +++       
Sbjct: 363  LVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHST------ 416

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGK 529
                    + +  ++T ++KR+ S L  G  +  ++F FLAFSSSQLR+ SAW F+    
Sbjct: 417  -------NVQARGRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKG 469

Query: 530  TSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK--RNG--Y 584
             +  DI+ WMG F+  +N+AK AAR+GQ FSS+  T+ V   E++  +PDI+  ++G  Y
Sbjct: 470  LTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINL-IPDIEIMKDGIKY 528

Query: 585  VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
            VF DGIGKI+ + A +VA K +L     P A+QIR  G KGVVA  P      ++SLR+S
Sbjct: 529  VFPDGIGKISAEFAKKVAAKCRLK-GCTPSAFQIRIGGFKGVVAIDPT--SSWKLSLRKS 585

Query: 645  MNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDS 704
            M K++S +T L++ +W+++QP FLNRQ+ITLLSTL VPD  F   Q  ++ +LN +L D 
Sbjct: 586  MEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDP 645

Query: 705  DVAFEVLT-AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA 763
              A E L   +  E  N    ML  G+ P  EP L  ML   RA++L  LR KARIFV  
Sbjct: 646  LEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQK 705

Query: 764  GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCL 823
            GR +MGCLDE   L  GQ F+Q S           GSR   +++  +++G V++AKNPCL
Sbjct: 706  GRSMMGCLDETRTLNYGQVFVQFS-----------GSR---SERRFIVQGKVIVAKNPCL 751

Query: 824  HPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSK 883
            HPGD+R+L AV+ P+LHH+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD  LIP   
Sbjct: 752  HPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIP--Y 809

Query: 884  KSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDEN 943
            K   PM+Y+ A    L   V   +I E+F  ++VN++LG I NAH   AD     A+   
Sbjct: 810  KQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRP 869

Query: 944  CILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDA 1003
            C+ LA+L + AVDFPKTG    +P  L+ K +PDFM K    SY+S  ++G+L+R+ K+ 
Sbjct: 870  CLELAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNL 929

Query: 1004 YDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREE 1063
               + S+   +    +   YD D+EV   VD+I DA+  K  YD +L  L++ Y V  E 
Sbjct: 930  APNECSIKL-LTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEA 988

Query: 1064 ELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFE 1123
            E+++G I  M +  ++K+    E +  +  +LRKE R  F +  S+   L E+  +A   
Sbjct: 989  EILSGGIMKMSRSFTKKRD--AESISMAVRSLRKEARSWFNEKGSE---LDEEIDDAY-- 1041

Query: 1124 RKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
             KASAWY VTYH  +  +  +   +D       LSF W   D L +IK
Sbjct: 1042 AKASAWYYVTYHHSYWGQYNEGMNRDH-----FLSFPWCVYDKLIQIK 1084


>gi|302812554|ref|XP_002987964.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
 gi|300144353|gb|EFJ11038.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
          Length = 1052

 Score =  584 bits (1506), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 397/1106 (35%), Positives = 577/1106 (52%), Gaps = 98/1106 (8%)

Query: 78   HAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLG---PENPFRLNQRGRTSTPFKLPD 134
            +AFV FA       A   A    L   GRAL++         P R ++R        +  
Sbjct: 5    YAFVQFATAEASQLASQLAAENALLFYGRALRIQARKAVTHGPIRGDER--------VEG 56

Query: 135  VCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCE 194
            + + +G   +R E         SG D L        +FCF    +  L    +H  +  +
Sbjct: 57   IVLTMG--FARGE---------SGIDCLWSCSGVAAEFCFG---SCQLNLLLQHDGV--D 100

Query: 195  FKVEFLVREINLVKQYSEFSCVA-ILLQ-LASSPRVWYR--TADDDILVLVPFDMLDDDD 250
            +K+E L R +  V  + E S  + +LLQ +  +P    R   A         +     + 
Sbjct: 101  YKLELLFRNLRFVDAFVETSQASHLLLQVMLDTPLAILRHFKAVRSNSYNYKYSKFAKEP 160

Query: 251  PWIRTTDFTPSGAIGR----CNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIR 306
             W R+TDFTP  AI +    C  +   +S     K+SK ++          S+ R +T+ 
Sbjct: 161  TWTRSTDFTPGKAISQSLVYCLEFPSDLSDEQALKISKSLS-----GYDTSSMDRALTLV 215

Query: 307  EEPDFEVPMS-DPFFCIHYEEG--ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSR 363
                + +     P   I  ++G  + F+I++ +N ++  G ++   ++   F LL+G   
Sbjct: 216  AGESYALQQELSPILSITEDDGAPLPFDIVYKINFLVQSGYMSPASVTRELFTLLQGFPE 275

Query: 364  EVNVAALKHIYSYKWPV-FDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTK 422
            ++ ++AL  + S    V  DA   ++   +   +  EL +          V+RLV+TPTK
Sbjct: 276  KLCLSALDKLVSPAGNVSLDAFSTIESYLKCHHRRSELVEPD---GGYTYVKRLVVTPTK 332

Query: 423  AYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFS 482
             YC  PE+E SN V R+YKD A  FLRV+F+DE  +T+ A+ +     P    + +    
Sbjct: 333  VYCTGPELERSNGVTRRYKDFAANFLRVSFVDENFETLYADAVRL---PTKVSVQIGLLP 389

Query: 483  QKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRF 542
            + + V+ RV +++  G  + G+KF FL FS+SQLR+ S W F++ G  +   I+ WMG F
Sbjct: 390  EPSSVYHRVLAVVRDGVTIGGKKFKFLGFSASQLREHSLWMFADAGSVTAESIRAWMGDF 449

Query: 543  TD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEV 601
                NIAKCAAR+GQ FSS+ +++EV   E+           Y FSDG+GKI+   A  V
Sbjct: 450  GGFTNIAKCAARIGQSFSSSRSSLEVLEDELSSVEDIYCGTRYCFSDGVGKISKAFATSV 509

Query: 602  AQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWT 661
            A+   + V     A QIRYAG KGVVA  P      ++SLR SM KF S  T L++   +
Sbjct: 510  ARACNMPV--VLSALQIRYAGYKGVVAVDPTCS--TKLSLRPSMLKFPSERTGLDVLKAS 565

Query: 662  RFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL--TAACAEQG 719
            ++ P +LNRQ I L++TL VPDE+F  MQ   L  L++ML D   A EVL  +++  E  
Sbjct: 566  QYAPYYLNRQSIILMTTLGVPDEVFERMQKEELKILDEMLSDPQTAIEVLRSSSSGGEAH 625

Query: 720  NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG 779
            +    ML AG+ P  EP LR +L   R+ QL+ LR K+RI+VP GR L+GCLDE GVL+ 
Sbjct: 626  SIMVAMLQAGYKPAHEPFLRRLLDNFRSLQLYLLRTKSRIYVPKGRCLLGCLDETGVLDY 685

Query: 780  GQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
            GQ F+QV                  ++   V+ G VV+ KNPCLHPGD+ +LEAVD P L
Sbjct: 686  GQVFVQVG--------------VTRSESACVVLGKVVVTKNPCLHPGDLLVLEAVDVPGL 731

Query: 840  HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL 899
            HH+ DC+VFPQ+G RPH NE SGSDLDGDLYFVTWD++L+PP   +  PM+Y    A  L
Sbjct: 732  HHMIDCVVFPQRGKRPHPNECSGSDLDGDLYFVTWDKSLVPPV--THEPMDYEPGTAAKL 789

Query: 900  TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
               V   +I  FF   MV+++LG I NAH+VHAD     A D  C+ LA LA+TAVDF K
Sbjct: 790  DHSVTLEEIQRFFVDSMVHDSLGVISNAHLVHADKELERAKDPKCLELARLASTAVDFAK 849

Query: 960  TGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP- 1018
            TG    +P  L+P+ YPDFM  E   +Y S  +LG+LYR  +         SS V  +P 
Sbjct: 850  TGIPAVIPVDLRPRDYPDFMENEFKSTYTSQSVLGKLYRSLQSNGRIFSQRSSAVAASPK 909

Query: 1019 -VDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYN 1077
             +D  +D  L V      +++A + K  YD +L  LL  Y++  E E+VTG++  + K N
Sbjct: 910  EMDQEFDRSLTVDGYEQHVSEARSLKELYDTKLERLLRHYEIT-EAEIVTGNVLCLGKAN 968

Query: 1078 SR-KQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHP 1136
             + K+ + ++R+  +  +L KE  + FE   ++ +L            KA AWY VTYHP
Sbjct: 969  EKTKRNDTRDRIACAMKSLAKEAGRWFEAGLNEHQL-----------AKACAWYHVTYHP 1017

Query: 1137 EWVKKSLDLQEQDSARSVVLLSFAWI 1162
            E+ K S          +V  LSF W+
Sbjct: 1018 EFRKGS----------NVESLSFPWV 1033


>gi|242066062|ref|XP_002454320.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
 gi|241934151|gb|EES07296.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
          Length = 1114

 Score =  583 bits (1503), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 377/987 (38%), Positives = 543/987 (55%), Gaps = 82/987 (8%)

Query: 218  ILLQLASSPRVWYRTADDDILVLV-PFD---MLDDDDPWIRTTDFTPSGAIGRCNSYRIS 273
            +L+Q+ ++P+++        L+   PF    M D D+ W RT DFTPS +IG+ + + + 
Sbjct: 175  LLIQVQAAPKIYELLPRRPGLMYEDPFFNWFMDDTDEQWTRTIDFTPSVSIGQSSIFCLE 234

Query: 274  ISSR-HRGKLSKVITYLGERRVQVDSLSR--------PITIREEPDF-EVPMSDPFFCIH 323
            +  +    ++     Y  ER +  +  +          + I + PD+ EVP         
Sbjct: 235  VPQQCELPRIGDYFVYYKERNLDFECRNGYSYSCGNCLVPIVKSPDYIEVP--------- 285

Query: 324  YEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSR---EVNVAALKHIYSYKWPV 380
                  +EI+F +N ++  G ++   +  SFF  +  +      +  A LK  Y  K   
Sbjct: 286  ------YEILFKINHLVQNGTLSGPTVDHSFFCHVSPEFEPIDHIKRALLKMSY-LKSTC 338

Query: 381  FDACKRLKLVQEWLLKDPELYKGPKQI---DDIVEVRRLVITPTKAYCLPPEVELSNRVL 437
             +    L +    + +     +    I   D +V V R+ +TP K Y   PE+ +SNRV+
Sbjct: 339  LNPTNWLSVQYSRIRRSRHASQRSSNISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVV 398

Query: 438  RKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSG 497
            R +    D FLR++F+DE  + + +  LS       R  + N  +++T ++ RV S+LS 
Sbjct: 399  RNFSADIDNFLRISFVDEDCEKLRSLDLS------PRSTSGND-ARRTALYNRVLSVLSN 451

Query: 498  GFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQ 556
            G  +  + F FLAFSSSQLRD SAW F+     +  DI+KWMG F D +N+AK AAR+GQ
Sbjct: 452  GINIGDKHFEFLAFSSSQLRDNSAWMFASRQGLTASDIRKWMGDFRDIRNVAKYAARLGQ 511

Query: 557  CFSSTYATVEVPPTEVDPELPDIKR-NGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCA 615
             FSS+  T+ V   EV+ ++PDIK    Y+FSDG+GKI+ + A EVA K KL     P  
Sbjct: 512  SFSSSTETLIVRKHEVE-QIPDIKNGTNYIFSDGVGKISANFAKEVAMKCKLR-RFAPSV 569

Query: 616  YQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITL 675
            +QIRY G KGVVA  P      ++SLR SM KFQS + TL++ +++++QP FLNRQ+ITL
Sbjct: 570  FQIRYGGYKGVVAVDPRSNR--KLSLRRSMLKFQSENITLDVLAYSKYQPCFLNRQLITL 627

Query: 676  LSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFE-VLTAACAEQGNTAAIMLSAGFNPQT 734
            LSTL V D +F   Q   + +LN+M+ +   A E V      E  N    +LS G+ P  
Sbjct: 628  LSTLGVGDNVFELKQKEAIKQLNRMVTEPQAAREAVELMPMGEVTNVVKELLSCGYQPDH 687

Query: 735  EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNC 794
            EP+L  +L   RA++L  L+ K+RIF+  GR +MGCLDE   L+ GQ FIQ S      C
Sbjct: 688  EPYLSMLLQTFRASKLLELKTKSRIFITQGRAMMGCLDETRTLKYGQVFIQAS-----YC 742

Query: 795  FSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDR 854
               H           V+ G VV+AKNPCLHPGDIR+L+AVD P LHH++DC+VFPQ+G R
Sbjct: 743  ADDHHK--------IVVTGKVVVAKNPCLHPGDIRVLQAVDVPSLHHMFDCVVFPQQGPR 794

Query: 855  PHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAK 914
            PH NE SGSDLDGD+YFV+WD +LIP   +   PM+Y  A A+TL   V   +I E+F  
Sbjct: 795  PHPNECSGSDLDGDIYFVSWDPDLIPSHMED--PMDYTPAPAETLDHDVTIEEIQEYFTN 852

Query: 915  HMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKL 974
            ++VNE+LG I NAHVV+AD  +  A    C+ LA+L + AVDFPKTG    +P  L  K 
Sbjct: 853  YIVNESLGIIANAHVVYADKEDLKAKSRPCLELAKLFSIAVDFPKTGVPALIPPELHVKE 912

Query: 975  YPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVD 1034
            YPDFM K    +Y+S  ++G+LYR+ K         + EV        YDTDL V    D
Sbjct: 913  YPDFMEKLDKATYESKGVIGKLYREIKKHTPHIRHFTREV----AKRSYDTDLIVDGYED 968

Query: 1035 FIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSA 1094
            +I +A   K  YD +L  L++ Y +  E E+++G    M K N  K  +  + ++ +  +
Sbjct: 969  YITEAIEFKEEYDFRLGNLMDHYGIKSEAEIISGCFLKMAK-NFTKSSD-ADAIRMAVRS 1026

Query: 1095 LRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSV 1154
            LRKE R  F +M +     SED+++A  E KASAWY VTY P++     +  ++      
Sbjct: 1027 LRKEARSWFNEMST-----SEDDQDAT-EAKASAWYHVTYDPQYWGNYNEGYDRPH---- 1076

Query: 1155 VLLSFAWIANDYLARIKIRCREMANID 1181
             L+SF W   D L  IK R      +D
Sbjct: 1077 -LISFPWCVYDKLVIIKQRRNFFTQMD 1102


>gi|225424395|ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  580 bits (1494), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 395/1063 (37%), Positives = 566/1063 (53%), Gaps = 93/1063 (8%)

Query: 135  VCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAV-IKC 193
            + +  G  +S + F V W+       F      G  KF F     F    S E+ + + C
Sbjct: 99   ITLHFGYQMSNERFCVLWKAINVSVKFGF----GLRKFYF-----FLSHGSEEYKLELSC 149

Query: 194  EFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWI 253
            E   +  +RE     Q ++F    +L+QL  +P+++    + D+  L  F    DD  W+
Sbjct: 150  ENIWQIQLREPR--GQNTKF----LLIQLLDAPQIY----EKDVSALSYFKETPDDQ-WV 198

Query: 254  RTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFE- 312
            R  DFTPS +IG+ ++  + +   H  +L        E   +     R   +     F  
Sbjct: 199  REIDFTPSCSIGQSSA--LCLELPHGSQLPNFC----ENFARYKENDRKFILESGASFSG 252

Query: 313  ----VPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVA 368
                VP+  P         + F+I+F +N ++  G ++   L  +FF  +  Q   +N++
Sbjct: 253  NLHLVPIVGP----PQGSNLPFKILFKINTLVQNGCLSGPTLDTNFFRWVDPQ--RINIS 306

Query: 369  ALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQI---------DDIVEVRRLVIT 419
             ++H     + + + C        WL +    Y   KQ+           +V VRR+ IT
Sbjct: 307  FIEHALEKLYYLEECCYE---PVRWLHEQYRTYIS-KQVAGSPAISLDTGLVYVRRVQIT 362

Query: 420  PTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLN 479
            P K Y   PEV +SNRVLR Y +  D FLRV+F+DE  + +++ V+S           ++
Sbjct: 363  PCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVIS---------PRMS 413

Query: 480  SFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWM 539
            +  ++T V++R+ SIL  G  +  +KF FLA SSSQLRD SAW F+     +  DI+  M
Sbjct: 414  NEGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRM 473

Query: 540  GRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK--RNG--YVFSDGIGKIT 594
            G F+  +N+AK AAR+GQ FSS+  T++V   E++  +PDI+  R+G  YVFSDGIGKI+
Sbjct: 474  GDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEI-IPDIETHRDGTTYVFSDGIGKIS 532

Query: 595  PDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTT 654
             +LA  VA K     N  P A+QIRY G KGVVA  P      ++SLR+SM K++S +T 
Sbjct: 533  AELAHRVAIKCGCK-NSTPSAFQIRYGGYKGVVAVDPTSSR--KLSLRKSMFKYESENTN 589

Query: 655  LEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT-A 713
            L++ SW++++P FLNRQ+ITLLSTL V D +F   Q   + +L+ +L D   A E L   
Sbjct: 590  LDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALELM 649

Query: 714  ACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDE 773
            +  E  N    ML  G+ P  EP L  ML   RAA+L  LR K RIFVP GR +MGCLDE
Sbjct: 650  SPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDE 709

Query: 774  LGVLEGGQCFIQVS----EPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIR 829
               LE G+ F+Q+S        G+    +GS         +++G VV+AKNPCLHPGD+R
Sbjct: 710  TRTLEYGEVFVQISGTGGRQSFGDSLMFYGS--GSHHDNFILEGKVVVAKNPCLHPGDVR 767

Query: 830  ILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPM 889
            IL AVD P LHH+ DC+VFPQKG RPH +E SGSDLDGD+YFV WD +LIPP + +  PM
Sbjct: 768  ILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQIN--PM 825

Query: 890  EYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAE 949
            +Y  A  K L   V   ++ E+F  ++ N+ LG I NAH V AD     AL   C  LA+
Sbjct: 826  DYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAK 885

Query: 950  LAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDIS 1009
            L + A++FPKTG    +P HL  K YPDFM K    +Y+S  ++G+L+R+ KD    +  
Sbjct: 886  LFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYD 945

Query: 1010 VSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGH 1069
            V S      +   YD D+EV    D++ DA+  K  YD +L  L++   +  E E+++G 
Sbjct: 946  VRSFTRDVAMQ-SYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGS 1004

Query: 1070 IWSMPK-YNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASA 1128
            I  M K ++ RK  E    +  +  +LRKE R  F KM S       D+  A+    ASA
Sbjct: 1005 IMKMSKSFDKRKDAEA---IALAVRSLRKEARTWFNKMGSGT-YAGADDVYAI----ASA 1056

Query: 1129 WYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
            WY VTYHP +     +    D       LSF W   D L +IK
Sbjct: 1057 WYHVTYHPYYWGCYNEGMYHDH-----FLSFPWCVYDKLIQIK 1094


>gi|357164043|ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
            distachyon]
          Length = 1140

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 368/1017 (36%), Positives = 560/1017 (55%), Gaps = 78/1017 (7%)

Query: 195  FKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDML-----DDD 249
            +K+E L  +I    + S     AILLQL  +PR+    +   +      D L     D  
Sbjct: 157  YKLEVLFEDIRNCFRCSLDGTSAILLQLTYAPRIHTAFSGPAVYSRFKDDRLHACKEDAK 216

Query: 250  DPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEP 309
              W+R  DFTP+ + G+C++  I +       +S ++  L    V  +     + +    
Sbjct: 217  FTWVRALDFTPNQSFGKCSTLVIKLD--EDALMSYILNTLPFSGVLGELAISSMDVVGPS 274

Query: 310  DFEVPMSD-PFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVA 368
               VP+ D P  C      +S+E++F +N+++H G I    ++   F  L      ++  
Sbjct: 275  SKAVPLVDCPHGC-----SVSYEVLFRLNSLVHMGKIVAKHVNAKLFAFLEQVPLHISRR 329

Query: 369  ALKHIYSYKWPVFDACK----RLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAY 424
              + +   +   ++  +     LKL    LL      +G      ++   R+ ITP+K Y
Sbjct: 330  IFEKMSKLESTCYEPLQFIESELKLTHNALLSSKREGEG-----KLMRCYRIHITPSKIY 384

Query: 425  CLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQ- 483
            CL PE E SN V++ + + A  F+RVTF+DE    ++ N +S         I    FSQ 
Sbjct: 385  CLGPEEEASNYVVKHHSEYASDFVRVTFVDEDWSKLSVNAISA-------RIEQGFFSQP 437

Query: 484  -KTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRF 542
             KT ++ R+ SIL  GF +  +KF FLAFS+SQLR+ S W F+ +   +   I++WMG F
Sbjct: 438  FKTGLYYRILSILKEGFIIGPKKFEFLAFSASQLREGSVWMFASNDSLNAESIRRWMGHF 497

Query: 543  TD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK----RNGYVFSDGIGKITPDL 597
             + ++++KCAARMGQ FSS+  TVEV P +V+ E+PDI+       Y+FSDGIGK++   
Sbjct: 498  EEIRSVSKCAARMGQLFSSSRQTVEVRPWDVE-EIPDIEVTTNNTKYIFSDGIGKMSVRF 556

Query: 598  AMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEI 657
            A E+A ++ LD   PP A+QIR+ G KGV+A  P+      +SLR SM KF+S    L I
Sbjct: 557  AREIAYRIGLDHTNPPSAFQIRFGGYKGVIAVDPSSFRN--LSLRPSMRKFESDCRMLNI 614

Query: 658  CSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAE 717
             SW++ QP ++NR+II+LLSTL + DE+F  MQ   + +L++ML + +VA  VL    + 
Sbjct: 615  TSWSKSQPCYVNREIISLLSTLGIRDEVFELMQQDDMRELDEMLTNKEVALSVLGKIGSA 674

Query: 718  QGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVL 777
            +  TAA ML  G+ P +EP+L  +L   +  +L  +R K +I VP GR L+GCLDE G L
Sbjct: 675  ETKTAADMLLQGYEPISEPYLLMILKAHQDNRLTDIRSKFKIHVPKGRVLLGCLDETGKL 734

Query: 778  EGGQCFIQVSEPFLGNCFSKHGSR--FAETK-KLQVIKGFVVIAKNPCLHPGDIRILEAV 834
            + GQ +I++++    N   K   +  F+E   K   + G V ++KNPCLHPGD+R+LEAV
Sbjct: 735  KYGQVYIRITK---NNKEQKENEQPYFSEDDGKTVTLVGKVAVSKNPCLHPGDVRVLEAV 791

Query: 835  DHPELH--HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYN 892
              P LH   L DC+VFPQ+G+RPH NE SG DLDGDLYFVTWD+ LIP  +K+  PM+Y 
Sbjct: 792  YDPGLHAKKLVDCVVFPQRGERPHPNECSGGDLDGDLYFVTWDDKLIP--EKADAPMDYT 849

Query: 893  AAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAA 952
             A  + +   V   +I +    +M++++LG I NAH++HAD     A    C+ LA L +
Sbjct: 850  GARPRIMDHVVTLEEIQQHVVNYMLSDSLGAISNAHLIHADRDPMKARSPECLQLAALHS 909

Query: 953  TAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSS 1012
             AVDF KTG    +P  L+P+ +PDFM +     Y SN +LG+LYR +    +   +++S
Sbjct: 910  MAVDFAKTGAPAELPRSLRPREFPDFMERWDKPMYISNGVLGKLYRAAVSRMESSHALAS 969

Query: 1013 EVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWS 1072
            +V  +P    YD +L VP   +F+ DA      Y  +L  L+  Y    E+E++TG+I +
Sbjct: 970  QVQSSPT---YDRELAVPGFEEFLEDAEKHYDLYVEKLTTLMNYYGAEHEDEILTGNIRN 1026

Query: 1073 MPKY---NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAW 1129
               Y   + ++  ++K+R+  S +AL +E R  F+    +C L +E+E +    R ASAW
Sbjct: 1027 RLLYLRKDRKRYSDMKDRIFDSVNALHEEVRGWFK----NC-LKAEEEAS----RVASAW 1077

Query: 1130 YQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKI----RCREMANIDT 1182
            Y+V YHP+  +     ++Q         SF WI  D L  IK     RCR++  + T
Sbjct: 1078 YRVAYHPDHRRPE---KKQ-------FWSFPWIICDKLLAIKATKSNRCRKLVGVAT 1124


>gi|40794967|gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]
          Length = 1115

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 403/1127 (35%), Positives = 584/1127 (51%), Gaps = 116/1127 (10%)

Query: 79   AFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGRTSTPFKLPDVCVE 138
            A V F    + +  V+AA    L      LKV     +   +  + RT+  F L D  + 
Sbjct: 52   AIVQFETEAHASLVVNAARGNALRSGSNYLKVRPAERD---IILKPRTAL-FNLEDATLH 107

Query: 139  IGTLVSRDEFFVAWRGPASGTDF--LVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFK 196
             G L+      V W G     +F   +   D    FC T ++               ++K
Sbjct: 108  FGCLLRERVLSVLWSGTGVSVEFGFAMKKID----FCLTYNLK--------------KYK 149

Query: 197  VEFLVREINLVKQYSEFSCVA--ILLQLASSPRVWYR------TADDDILVLVPFDMLDD 248
            +E     I  ++ Y         +L+Q+ ++P+++ +      +  DD L     D  D 
Sbjct: 150  LELSYESIWEIQLYHPPGSQKKFLLIQVMAAPKIYEQNLWHSGSMYDDPLFNYFRD--DT 207

Query: 249  DDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREE 308
            DD W RTTDFTP  +IG+  SY + +       L  +  Y    +           +R  
Sbjct: 208  DDQWTRTTDFTPLASIGQ--SYILCLELPADCYLPNIREYFVYYKNHNHDFH---CMRGH 262

Query: 309  PDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVA 368
                     P     Y   + +EI+F +N ++  GI++   L D+F+ L+      V + 
Sbjct: 263  SYSSNSCFVPIVKSQYFTDVPYEILFKINNLVQNGILSGPTLDDNFYSLV--SPGYVCID 320

Query: 369  ALKHIYSYKWPVFDAC--------KRLKLVQ--EWLLKDPELYKGPKQIDD--IVEVRRL 416
             +KH       +   C        ++ K +Q    +L  P +      +DD  +  V R+
Sbjct: 321  HIKHALENMSYLKKTCLNPINWLSEKYKEIQISRHMLTSPNI-----ALDDDGLAYVYRV 375

Query: 417  VITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDI 476
             ITP K Y   PE+ +SNRV+R Y    + FLR++F+DE  + + +  LS   AP     
Sbjct: 376  QITPAKVYFYGPEINVSNRVVRNYSADLENFLRISFVDEDCEKLRSTDLSPRSAP----- 430

Query: 477  TLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIK 536
               + + +T ++ R+ S+LS G  +  + F FLAFSSSQLRD SAW F+     S  DI+
Sbjct: 431  --GNNASRTALYNRILSVLSNGITIGNKHFEFLAFSSSQLRDNSAWMFASRTGLSASDIR 488

Query: 537  KWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKI 593
            +WMG F + +N+AK AAR+GQ FS++  T++V   EV   LP++  NG  YVFSDGIG I
Sbjct: 489  EWMGNFRNIRNVAKYAARLGQSFSASTETLKVHKYEVQ-ALPEVT-NGTKYVFSDGIGTI 546

Query: 594  TPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHT 653
            + D A EV++K KL     P A+QIRY G KGVVA  P      ++SLR SM+KF S + 
Sbjct: 547  SADFADEVSRKCKL-ARFTPSAFQIRYGGYKGVVAIDPRSH--WKLSLRSSMSKFPSENI 603

Query: 654  TLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL-T 712
            TL++ +++++QP FLNRQ+ITLLSTL V D +F   Q + + +LN+++ +   A + +  
Sbjct: 604  TLDVLAYSKYQPCFLNRQLITLLSTLGVRDNIFELKQQAAVMQLNRLVTEPQAAIDAIEL 663

Query: 713  AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLD 772
                E  N    +L  G+ P  EP+L  +L   RA++L  L+ K+RIF+P GR +MGCLD
Sbjct: 664  MPMGEITNVVKELLLCGYQPDVEPYLSMILQTFRASKLLELKTKSRIFIPEGRAMMGCLD 723

Query: 773  ELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILE 832
            E   L+ G+ FIQ S        +    +F       V+ G VV+AKNPCLHPGDIRILE
Sbjct: 724  ETRTLKYGEVFIQASNS------ANESDKF-------VVTGKVVVAKNPCLHPGDIRILE 770

Query: 833  AVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYN 892
            AV  P L H+ +C+VFPQ+G RPH NE SGSDLDGD+YFV+WD +LIP   +   PM+Y 
Sbjct: 771  AVYTPVLDHMVNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPDLIP--TRMVAPMDYT 828

Query: 893  AAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAA 952
             A  +TL   V   ++ E+FA ++VNE+LG I NAHVV AD     A    CI LAEL +
Sbjct: 829  PAPTETLDHDVVIEEVHEYFANYIVNESLGIIANAHVVFADKESLKAESTQCIKLAELFS 888

Query: 953  TAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDA------YDE 1006
             AVD+PKTG    +P+ L  + YPDFM K    +Y S  ++G+LYR+ K        + +
Sbjct: 889  IAVDYPKTGVPAQIPSKLHVREYPDFMEKLDRATYISKGVIGKLYREIKKQSPHIGHFTK 948

Query: 1007 DISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELV 1066
            D++  S          YDTDL V    D+I +A   K  YD +L  L+E Y +  E E++
Sbjct: 949  DVARRS----------YDTDLIVDGYQDYITEAVWFKGEYDFKLGNLMEHYGIKSEAEII 998

Query: 1067 TGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKA 1126
            +G I  M K N  K  +  + ++ +  +LRKE R  F  M +D    S D   A +  KA
Sbjct: 999  SGCILKMAK-NFTKSSD-ADAIRLAVKSLRKEARSWFSDMSAD---ESGDVHEASYA-KA 1052

Query: 1127 SAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIR 1173
            SAWY VTYHPE+      + E+       L+SF W   D L  IK R
Sbjct: 1053 SAWYHVTYHPEYYGCYNKIYERPH-----LISFPWCVYDKLLHIKQR 1094


>gi|197223664|gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare]
          Length = 1114

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 402/1127 (35%), Positives = 584/1127 (51%), Gaps = 116/1127 (10%)

Query: 79   AFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGRTSTPFKLPDVCVE 138
            A V F    + +  V+AA    L      LKV     +   +  + RT+  F L D  + 
Sbjct: 52   AIVQFETEAHASLVVNAARGNALRSGSNYLKVRPAERD---IILKPRTAL-FNLEDATLH 107

Query: 139  IGTLVSRDEFFVAWRGPASGTDF--LVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFK 196
             G L+      V W G     +F   +   D    FC T ++               ++K
Sbjct: 108  FGCLLRERVLSVLWSGTGVSVEFGFAMKKID----FCLTYNLK--------------KYK 149

Query: 197  VEFLVREINLVKQYSEFSCVA--ILLQLASSPRVWYR------TADDDILVLVPFDMLDD 248
            +E     I  ++ Y         +L+Q+ ++P+++ +      +  DD L     D  D 
Sbjct: 150  LELSYESIWEIQLYHPPGSQKKFLLIQVMAAPKIYEQNLWHSGSMYDDPLFNYFRD--DT 207

Query: 249  DDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREE 308
            DD W RTTDFTP  +IG+  SY + +       L  +  Y    +           +R  
Sbjct: 208  DDQWTRTTDFTPLASIGQ--SYILCLELPADCYLPNIREYFAYYKNHNHDFH---CMRGH 262

Query: 309  PDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVA 368
                     P     Y   + +EI+F +N ++  GI++   L D+F+ L+      V + 
Sbjct: 263  SYSSNSCFVPIVKSQYFTDVPYEILFKINNLVQNGILSGPTLDDNFYRLV--SPGYVCID 320

Query: 369  ALKHIYSYKWPVFDAC--------KRLKLVQ--EWLLKDPELYKGPKQIDD--IVEVRRL 416
             +KH       +   C        ++ K +Q    +L  P +      +DD  +  V R+
Sbjct: 321  HIKHALENMSYLKKTCLNPINWLSEKYKEIQISRHMLTSPNI-----ALDDDGLAYVYRV 375

Query: 417  VITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDI 476
             ITP K Y   PE+ +SNRV+R Y    + FLR++F+DE  + + +  LS   AP     
Sbjct: 376  QITPAKVYFYGPEINVSNRVVRNYSADLENFLRISFVDEDCEKLRSTDLSPRYAP----- 430

Query: 477  TLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIK 536
               + + +T ++ R+ S+LS G  +  + F FLAFSSSQLRD SAW F+     S  DI+
Sbjct: 431  --GNNASRTALYNRILSVLSNGITIGNKHFEFLAFSSSQLRDNSAWMFASRTGLSASDIR 488

Query: 537  KWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKI 593
            +WMG F + +N+AK AAR+GQ FS++  T++V   EV   LP++  NG  YVFSDGIG I
Sbjct: 489  EWMGNFRNIRNVAKYAARLGQSFSASTETLKVHKYEVQ-ALPEVT-NGTKYVFSDGIGTI 546

Query: 594  TPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHT 653
            + D A EV++K KL     P A+QIRY G KGVVA  P      ++SLR SM+KF S + 
Sbjct: 547  SADFADEVSRKCKL-ARFTPSAFQIRYGGYKGVVAIDPRSH--WKLSLRSSMSKFPSENI 603

Query: 654  TLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL-T 712
            TL++ +++++QP FLNRQ+ITLLSTL V D +F   Q + + +LN+++ +   A + +  
Sbjct: 604  TLDVLAYSKYQPCFLNRQLITLLSTLGVRDNIFELKQQAAVMQLNRLVTEPQAAIDAIEL 663

Query: 713  AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLD 772
                E  N    +L  G+ P  EP+L  +L   RA++L  L+ K+RIF+P GR +MGCLD
Sbjct: 664  MPMGEITNVVKELLLCGYQPDVEPYLSMILQTFRASKLLELKTKSRIFIPEGRAMMGCLD 723

Query: 773  ELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILE 832
            E   L+ G+ FIQ S        +    +F       V+ G VV+AKNPCLHPGDIRIL+
Sbjct: 724  ETRTLKYGEVFIQASNS------ANESDKF-------VVTGKVVVAKNPCLHPGDIRILK 770

Query: 833  AVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYN 892
            AV  P L H+ +C+VFPQ+G RPH NE SGSDLDGD+YFV+WD +LIP   +   PM+Y 
Sbjct: 771  AVYTPVLDHMVNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPDLIP--TRMVAPMDYT 828

Query: 893  AAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAA 952
             A  +TL   V   ++ E+FA ++VNE+LG I NAHVV AD     A    CI LAEL +
Sbjct: 829  PAPTETLDHDVVIEEVHEYFANYIVNESLGIIANAHVVFADKESLKAESTQCIKLAELFS 888

Query: 953  TAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDA------YDE 1006
             AVD+PKTG    +P+ L  + YPDFM K    +Y S  ++G+LYR+ K        + +
Sbjct: 889  IAVDYPKTGVPAQIPSELHVREYPDFMEKLDRATYISKGVIGKLYREIKKQSPHIGHFTK 948

Query: 1007 DISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELV 1066
            D++  S          YDTDL V    D+I +A   K  YD +L  L+E Y +  E E++
Sbjct: 949  DVARRS----------YDTDLIVDGYQDYITEAVWFKGEYDFKLGNLMEHYGIKSEAEII 998

Query: 1067 TGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKA 1126
            +G I  M K N  K  +  + ++ +  +LRKE R  F  M +D    S D   A +  KA
Sbjct: 999  SGCILKMAK-NFTKSSD-ADAIRLAVKSLRKEARSWFSDMSAD---ESGDVHEASYA-KA 1052

Query: 1127 SAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIR 1173
            SAWY VTYHPE+      + E+       L+SF W   D L  IK R
Sbjct: 1053 SAWYHVTYHPEYYGCYNKIYERPH-----LISFPWCVYDKLLHIKQR 1094


>gi|4138343|emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
          Length = 775

 Score =  577 bits (1488), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 333/779 (42%), Positives = 468/779 (60%), Gaps = 39/779 (5%)

Query: 369  ALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPK-QIDD-IVEVRRLVITPTKAYCL 426
            AL+ +Y+ K   +D  + L    +  LK  +L K P   +DD ++ VRR+++TP K Y L
Sbjct: 5    ALEKLYNLKECCYDPVRWLTKQYDEYLKRRQLPKSPSITLDDGLMYVRRVLVTPCKVYFL 64

Query: 427  PPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTR 486
             PEV +SNRVLR Y +  D FLRV+F+DE  +     + S  + P       N    +T 
Sbjct: 65   GPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWE----KIFSMDLLP-----RANRNGIRTD 115

Query: 487  VFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-K 545
            +++R+ S L  G  +  +KF FLAFSSSQLRD S W F+     +  DI+ WMG F   +
Sbjct: 116  IYERILSTLQNGLVIGAKKFEFLAFSSSQLRDNSVWMFASRPGLTAYDIRTWMGDFQQIR 175

Query: 546  NIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQ 603
            N+AK AAR+GQ F S+  T+ V   E+   +PD++ +G  YVFSDGIGKI+ D A  VA+
Sbjct: 176  NVAKYAARLGQSFGSSRETLSVGRHEIK-YIPDVEVHGTNYVFSDGIGKISADFAHRVAK 234

Query: 604  KLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRF 663
            K  L     P A+QIRY G KGVVA  P     +++SLR+SM K++S++T L++  W+++
Sbjct: 235  KCGL--QHTPSAFQIRYGGYKGVVAVDPYSP--MKLSLRKSMLKYESNNTKLDVLGWSKY 290

Query: 664  QPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT-AACAEQGNTA 722
            QP +LNRQ++TL+STL V DE+F   Q+  +++L+ +L DS  A E L   +  E  N  
Sbjct: 291  QPCYLNRQLVTLMSTLGVKDEVFKRKQNEAVAQLDAILHDSLKAQEALDLMSPGENTNIL 350

Query: 723  AIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQC 782
              ML+ G+ P  EP L  ML   RA++L  LR + RIF+P GR +MGCLDE   LE GQ 
Sbjct: 351  KEMLNCGYLPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPKGRSMMGCLDESRTLEYGQV 410

Query: 783  FIQVSEPFLGNCFSKHGSRFAETKKLQ---VIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
            F+Q +    G  F +    F ++       ++KG VV+AKNPCLHPGDIR+L+AVD P L
Sbjct: 411  FVQFTGAG-GRQFYEESHHFNDSGSANYNFILKGNVVVAKNPCLHPGDIRVLKAVDVPAL 469

Query: 840  HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL 899
            HH+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD +LIPP  +   PM+Y  A +  L
Sbjct: 470  HHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPP--RQVQPMDYTPAPSIQL 527

Query: 900  TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
               V   ++ E+F  +MVN+ LG I NAHVV AD     A+ + CI LA+L + AVDFPK
Sbjct: 528  DHDVTIEEVEEYFTNYMVNDGLGVIANAHVVFADREPNMAMSDPCIELAQLFSIAVDFPK 587

Query: 960  TGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPV 1019
            TG    +P+ L+PK YPDFM K    +Y S K++G+L+R+ KD   +  S+++    +  
Sbjct: 588  TGVPAEIPSQLRPKEYPDFMEKPDKTTYHSEKVIGKLFREVKDKTTQASSITT-FTRDVA 646

Query: 1020 DIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSR 1079
               YDTDLEV    D+I +A++ K  YD +L  L++ Y +  E E ++G I    K   R
Sbjct: 647  RRSYDTDLEVDGFEDYIDEAFDYKSEYDKKLGNLMDYYGIKTEAETLSGGIMKASKTFDR 706

Query: 1080 KQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEW 1138
            ++    E +  +  +LRKE R  F++     +LL+          KASAWY V YHP +
Sbjct: 707  RRD--AEAIGVAVRSLRKEARTWFKRRSDIDDLLA----------KASAWYHVAYHPTY 753


>gi|302814495|ref|XP_002988931.1| hypothetical protein SELMODRAFT_235652 [Selaginella moellendorffii]
 gi|300143268|gb|EFJ09960.1| hypothetical protein SELMODRAFT_235652 [Selaginella moellendorffii]
          Length = 755

 Score =  577 bits (1488), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 343/786 (43%), Positives = 468/786 (59%), Gaps = 55/786 (6%)

Query: 399  ELYKGPKQIDD-IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGL 457
            E Y G    D+  + V+R+++TP K Y + PE+E SNRV R +    D FLRVTF+DE  
Sbjct: 9    ERYLGAVAADEGQIYVKRVLVTPLKVYFIGPELEESNRVTRHFSHKLDNFLRVTFVDED- 67

Query: 458  QTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLR 517
                      F +     ++ +     T V+ R+ +IL  G  LCG+ F FLAFS+SQLR
Sbjct: 68   ----------FDSLSSYVLSSSRGRTNTEVYYRLLAILRLGIKLCGKDFQFLAFSASQLR 117

Query: 518  DCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPEL 576
            + S W F++D + +   I++WMG F   +N+AKCAARMGQ FS++  T++VP  EV  +L
Sbjct: 118  ENSLWMFADDDEVTGEYIRQWMGDFLSIRNVAKCAARMGQSFSTSTRTLDVPRGEVR-QL 176

Query: 577  PDIKR-----NGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP 631
             D++      + Y FSDGIG I+ + A  VA++ +   +  P A+QIRY G KGVVA  P
Sbjct: 177  SDVETFTPEGHKYCFSDGIGTISTEFATRVARRCR--ASTVPSAFQIRYGGYKGVVAVDP 234

Query: 632  AKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQD 691
            A     ++SLR SM+KF S  TTL++   TR+ P +LNR+II+LLSTL VPDE+F  MQ 
Sbjct: 235  A--SCFKLSLRPSMSKFPSEQTTLDVLEKTRYIPSYLNREIISLLSTLEVPDEVFERMQA 292

Query: 692  SMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI-MLSAGFNPQTEPHLRGMLTCIRAAQL 750
              +  L++ML+DS   ++VL    A + +   + M+ AGF+P TEP++R +L   RAAQL
Sbjct: 293  HQVELLDRMLLDSAATYDVLRVLYAGECHKLLVSMVLAGFSPVTEPYMRSLLQAFRAAQL 352

Query: 751  WGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSK--HGSRFAETKKL 808
              L +K+RIFVP GR LMGCLDE  VL  GQCF+QVS P  G    +  H  R    +  
Sbjct: 353  LSLEKKSRIFVPKGRLLMGCLDEQRVLRYGQCFVQVS-PLQGVPVEEEIHCDRGVTARNQ 411

Query: 809  Q-VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDG 867
               + G VV+AKNPCLHPGD+ +LEAVD PELHH+ DC+VFPQ+G RPH NE SGSDLDG
Sbjct: 412  AFAVTGSVVVAKNPCLHPGDVLVLEAVDVPELHHMVDCIVFPQQGPRPHPNECSGSDLDG 471

Query: 868  DLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNA 927
            D YFV+WD  LIPP  K  PPM Y A  A  L   V   +I EFF   + +++LG I +A
Sbjct: 472  DQYFVSWDSALIPP--KRHPPMNYEAPPAMELDHSVRLEEIQEFFVNWITSDSLGVIAHA 529

Query: 928  HVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSY 987
            H+  +D SE    D  C+ LA L + AVDFPKTG    MP  L+P+ YPDFM K   ++Y
Sbjct: 530  HLALSDWSELQTRDPKCMELARLYSVAVDFPKTGVPAVMPPELRPEQYPDFMEKRNKRTY 589

Query: 988  KSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYD 1047
             S +++G+LYR  ++++  D + S  V     D  YD  L V      + +A   K  Y+
Sbjct: 590  ISTRVIGKLYRSIRESH-RDTNTSPLVSERSFDQQYDRALVVQGYQSHLEEAKFFKECYN 648

Query: 1048 GQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMD 1107
             +L  +L  YKV+ E E+++G I S+ +Y+ R+QG+   R+  +  AL KE R  F+   
Sbjct: 649  SKLTSILNHYKVS-EAEIMSGSIRSLARYSRRRQGDAMARVVLAAKALVKEARGWFD--- 704

Query: 1108 SDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYL 1167
             D   ++E+E  A    KA AWY VTYHPE  K+S             LLSF W+    L
Sbjct: 705  -DGGEITENEACA----KAFAWYHVTYHPEARKES------------DLLSFPWVV---L 744

Query: 1168 ARIKIR 1173
              IK R
Sbjct: 745  VAIKKR 750


>gi|4138282|emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  577 bits (1488), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 376/989 (38%), Positives = 547/989 (55%), Gaps = 99/989 (10%)

Query: 218  ILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSR 277
            +LLQL  +PR++ R  D        F     DD W+RTTDFTPS  IG  +S  + +  R
Sbjct: 166  LLLQLFGAPRIYKRLEDS----CYSFFKETPDDQWVRTTDFTPSW-IGLSSS--LCLEFR 218

Query: 278  HRGKL---SKVITYLGERRVQ-------VDSLSRPITIREEPDFEVPMSDPFFCIHYEEG 327
            +  +L   S+   Y  E   Q         S S+ + +       VP+      +H  EG
Sbjct: 219  NGVQLPNFSESFFYYKESMNQFILQTGFTFSFSQKLAL-------VPI------VHLPEG 265

Query: 328  IS--FEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKH----IYSYKWPVF 381
            I   ++I+F +++++  G      L+ +FF L+  + R  N+A ++H    +Y  K   +
Sbjct: 266  IELPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRR--NIACIEHALEKLYYLKECCY 323

Query: 382  DACKRLKLVQEWLLKDPELYKGPK-QIDD-IVEVRRLVITPTKAYCLPPEVELSNRVLRK 439
            D  + L    +  LK  +L K P   +DD +V VRR+V+TP K Y   PEV +SNRVLR 
Sbjct: 324  DPVRWLTEQYDEYLKGRQLPKSPPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRN 383

Query: 440  YKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGF 499
            Y +  + FLRV+F+DE  + +++  L      + R  T N    +T +++R+ S L  GF
Sbjct: 384  YSEDINNFLRVSFVDEEWEKIHSTDL------LPRASTGNG--TRTDIYERILSTLRNGF 435

Query: 500  YLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCF 558
             +  ++F FLAFSSSQLRD S W F+     +  DI+ WMG F   +N+AK AAR+GQ F
Sbjct: 436  IIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSF 495

Query: 559  SSTYATVEVPPTEVDPELPDI----KRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPC 614
             S+  T+ V   EV+  +PD+        Y+FSDGIGKI+ D A  V  K  L   P   
Sbjct: 496  GSSRETLSVGRHEVE-VIPDVACSLHGTNYIFSDGIGKISADFAHRVTIKCGLQYTP--S 552

Query: 615  AYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIIT 674
            ++QIRY G KGVVA  P     +++SLR+SM K++S++  L++  W+++QP +LNRQ++T
Sbjct: 553  SFQIRYGGYKGVVAVDPYSS--MKLSLRKSMLKYESNNIKLDVLGWSKYQPCYLNRQLVT 610

Query: 675  LLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT-AACAEQGNTAAIMLSAGFNPQ 733
            LLSTL V D++    Q+  + +L+ +L DS  A E L   +  E  N    ML+ G+ P 
Sbjct: 611  LLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPD 670

Query: 734  TEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGN 793
             EP L  ML   RA++L  LR + RIF+P GR +MGCLDE   LE GQ F+Q        
Sbjct: 671  AEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQ-------- 722

Query: 794  CFSKHGSR--FAETKKLQ---------VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
             FS  G R  F E+             ++KG VV+AKNPCLHPGDIR+L AVD P LHH+
Sbjct: 723  -FSGAGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHM 781

Query: 843  YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRP 902
             DC+VFPQKG RPH NE SGSDLDGD+YFV WD +LIPP +     M+Y  A    L   
Sbjct: 782  VDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQ--SMDYTPAPTTQLDHD 839

Query: 903  VDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGK 962
            V   ++ E+F  +++N++LG I NAHVV AD     A+ + C  LA+L + AVDFPKTG 
Sbjct: 840  VTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGV 899

Query: 963  IVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIH 1022
               +P+ L+PK YPDFM K    +Y S K++G+L+++ K+   +  S+++    +     
Sbjct: 900  PAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIAT-FTRDVARKS 958

Query: 1023 YDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQG 1082
            YD+D+ V    D+I +A+  K  YD +L  L++ Y +  E E+++G I    K   R++ 
Sbjct: 959  YDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKD 1018

Query: 1083 ELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKS 1142
               E +  +   LRKE R  F++     ++L+          KASAWY VTYH  +    
Sbjct: 1019 --AEAIGVAVRCLRKEARAWFKRRSDIDDMLA----------KASAWYHVTYHHTYWGLY 1066

Query: 1143 LDLQEQDSARSVVLLSFAWIANDYLARIK 1171
             +  ++D       +SF W   D L +IK
Sbjct: 1067 NEGLKRDH-----FISFPWCVYDQLIQIK 1090


>gi|113205194|gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
          Length = 1137

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 390/1046 (37%), Positives = 559/1046 (53%), Gaps = 108/1046 (10%)

Query: 163  VDPFDG-TCKF-CFTRDIAFALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILL 220
            VD  DG T  F C   D  FA+  STE                + L + Y + +   +L+
Sbjct: 162  VDHMDGITLNFGCQISDDKFAVLGSTE----------------VVLHRPYGQ-NAQFLLI 204

Query: 221  QLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSG---AIGRCNSYRISISSR 277
            QL  +PR++ R  +        F     DD W+RTTDFTPS    +   C  +R  +   
Sbjct: 205  QLFGAPRIYKRLENS----CYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRRGV--- 257

Query: 278  HRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFCIHYEEGIS--FEIMFL 335
            H     +   +  ER   +   +       +    VP   P       EGI+  ++I+F 
Sbjct: 258  HLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQP------PEGIAIPYKILFK 311

Query: 336  VNAVMHKGIINQHQLSDSFFDLLRGQSREVNV--AALKHIYSYKWPVFDACKRLKLVQEW 393
            +++++  G I    L+  FF L+  Q R V     AL+ +Y  K   +D  + L    + 
Sbjct: 312  ISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDG 371

Query: 394  LLKDPELYKGPK-QIDD-IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVT 451
              K  +  K P   +DD +V VRR+++TP K Y   PEV +SNRVLR Y +  D FLRV+
Sbjct: 372  YFKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVS 431

Query: 452  FMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAF 511
            F+DE  + + +  L      + +  T N    +T +++R+ S L  GF +  +KF FLAF
Sbjct: 432  FVDEEWEKLYSTEL------LPKASTGNGI--RTNIYERILSTLRKGFVIGDKKFEFLAF 483

Query: 512  SSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPT 570
            SSSQLRD S W F+     +  DI+ WMG F+  KN+AK AAR GQ F S+  T+ V   
Sbjct: 484  SSSQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETLSVLRH 543

Query: 571  EVDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVA 628
            E++  +PD+K +G  YVFSDGIGKI+ D A +VA    L   P   A+QIRY G KGVVA
Sbjct: 544  EIE-VIPDVKVHGTSYVFSDGIGKISADFARKVASNCGLQYTP--SAFQIRYGGYKGVVA 600

Query: 629  CWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWS 688
              P     +++SLR+SM+K++S +  L++  W+++QP +LNRQ++TLLSTL V D++   
Sbjct: 601  VDPYSS--MKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLVTLLSTLGVKDDVLEQ 658

Query: 689  MQDSMLSKLNQMLVDSDVAFEVLT-AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRA 747
             Q   + +L+ +L DS  A E L   +  E  N    ML+ G+ P  EP L  ML   RA
Sbjct: 659  KQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRA 718

Query: 748  AQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNC---FSKHGSRFAE 804
            ++L  LR K+RIF+P GR +MGCLDE   LE GQ F+Q    F G     FS+    F  
Sbjct: 719  SKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQ----FTGAGHREFSEDLHPFNN 774

Query: 805  TKKLQ---VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEAS 861
            ++      ++KG VV+AKNPCLHPGDIR+L AVD P LHH+ DC+VFPQKG RPH NE S
Sbjct: 775  SRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECS 834

Query: 862  GSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENL 921
            GSDLDGD+YFV WD+++IPP  +    ME+    +  L   V   ++ E+F  ++VN+ L
Sbjct: 835  GSDLDGDIYFVCWDQDMIPP--RQVQAMEFPPPPSIQLDHDVTIEEVEEYFTNYIVNDGL 892

Query: 922  GTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGK 981
            G I NAHVV AD               E     +DFPKTG    +P+ L+PK YPDFM K
Sbjct: 893  GIIANAHVVFADR--------------EPDMAMMDFPKTGVPAEIPSQLRPKEYPDFMDK 938

Query: 982  EAYQ-SYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAW 1040
               + +Y S +++G+L+R+ KD   +  S++     +     YDTDLEV    D+I +A+
Sbjct: 939  PPDKTTYISERVIGKLFRKVKDKAPQASSIAI-FTRDDARRSYDTDLEVDGFEDYIDEAF 997

Query: 1041 NQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFR 1100
            + K  YD +L  L++ Y +  E E+++G I    K   R++    E +  +  ALRKE R
Sbjct: 998  DYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKD--AEAISIAVRALRKEAR 1055

Query: 1101 QVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPE-WVKKSLDLQEQDSARSVVLLSF 1159
              F++ +   ++L           KASAWY VTYHP  W   +  L+          +SF
Sbjct: 1056 TWFKRRNDIDDMLP----------KASAWYHVTYHPTYWGCYNQGLKRDH------FISF 1099

Query: 1160 AWIANDYLARI---KIRCREMANIDT 1182
             W   D L +I   K R R + N+ +
Sbjct: 1100 PWCVYDQLIQIKKEKARNRPVLNLSS 1125


>gi|15223906|ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
 gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName: Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1; AltName:
            Full=RNA-directed RNA polymerase 1
 gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19 [Arabidopsis thaliana]
 gi|110737376|dbj|BAF00633.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
 gi|332191105|gb|AEE29226.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  573 bits (1477), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 355/971 (36%), Positives = 531/971 (54%), Gaps = 72/971 (7%)

Query: 218  ILLQLASSPRVWYRTADDDILVLVPFDMLDD--DDPWIRTTDFTPSGAIGRCNSYRISIS 275
            +++Q+  +P+++ +      L+    D   D  D+ WIRTTDFT S  IG+  ++ + + 
Sbjct: 169  LVIQVIGAPKIFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELP 228

Query: 276  SR-HRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFCIHYEEGIS--FEI 332
               +     +      E R     +    +     +  VP+ DP        G S  FEI
Sbjct: 229  VHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDP------PPGFSLPFEI 282

Query: 333  MFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKR-----L 387
            +F +N ++    ++   L   F+ LL    ++ + A + H     + + + C        
Sbjct: 283  LFKLNTLVQNACLSGPALDLDFYRLL--NQKKYDRALIDHCLEKLFHLGECCYEPAHWLR 340

Query: 388  KLVQEWLLKDPELYKGPKQIDD-IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADR 446
               ++W+ K          +DD +V + R+ +TP + Y   PEV +SNRVLR Y    + 
Sbjct: 341  DEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINN 400

Query: 447  FLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKF 506
            FLRV+F+DE L+ + +  LS            +S  ++T+++ R+ S+L  G  +  +KF
Sbjct: 401  FLRVSFVDEDLEKVRSMDLS----------PRSSTQRRTKLYDRIYSVLRDGIVIGDKKF 450

Query: 507  SFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATV 565
             FLAFSSSQLR+ SAW F+   + +   I+ WMG F   +N+AK AAR+GQ FSS+  T+
Sbjct: 451  EFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETL 510

Query: 566  EVPPTEVDPELPDIK----RNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYA 621
             V   E++  +PD++       YVFSDGIGKI+ + A +VA+K  L     P A+QIRY 
Sbjct: 511  NVRSDEIEV-IPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGL-TEFSPSAFQIRYG 568

Query: 622  GCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNV 681
            G KGVVA  P      ++SLR+SM+KF+S +T L++ +W+++QP ++NRQ+ITLLSTL V
Sbjct: 569  GYKGVVAVDPNSSK--KLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGV 626

Query: 682  PDEMFWSMQDSMLSKLNQMLVDSDVAFEVL-TAACAEQGNTAAIMLSAGFNPQTEPHLRG 740
             D +F   Q  ++ +L+ +L     A E L   A  E  N    ++  G+ P  EP L  
Sbjct: 627  TDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSM 686

Query: 741  MLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGS 800
            ML   RA++L  LR K RIF+  GR +MGCLDE   LE GQ  +Q S+P       + G 
Sbjct: 687  MLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPM------RPGR 740

Query: 801  RFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEA 860
            RF       +I G VV+AKNPCLHPGD+R+L+AV+ P L+H+ DC+VFPQKG RPH NE 
Sbjct: 741  RF-------IITGPVVVAKNPCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNEC 793

Query: 861  SGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNEN 920
            SGSDLDGD+YFV WD+ L+PP  ++  PM+Y     + L   V   ++ E+FA ++VN++
Sbjct: 794  SGSDLDGDIYFVCWDQELVPP--RTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDS 851

Query: 921  LGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMG 980
            LG I NAH   AD     A  + CI LA+  +TAVDFPKTG    +P HL  K YPDFM 
Sbjct: 852  LGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFME 911

Query: 981  KEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAW 1040
            K    +Y+S  ++G+L+R+ K+     IS+ S   ++     YD D+EV    +++ +A+
Sbjct: 912  KPDKPTYESKNVIGKLFREVKERAPPLISIKS-FTLDVASKSYDKDMEVDGFEEYVDEAF 970

Query: 1041 NQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFR 1100
             QK +YD +L  L++ Y +  E E+++G I  M K  ++++    E +  +  ALRKE  
Sbjct: 971  YQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD--AESIGRAVRALRKE-- 1026

Query: 1101 QVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFA 1160
                       L +  E+      KASAWY VTYH  +     +   +D       LSFA
Sbjct: 1027 --------TLSLFNASEEEENESAKASAWYHVTYHSSYWGLYNEGLNRDH-----FLSFA 1073

Query: 1161 WIANDYLARIK 1171
            W   D L RIK
Sbjct: 1074 WCVYDKLVRIK 1084


>gi|297849898|ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
 gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 356/975 (36%), Positives = 531/975 (54%), Gaps = 81/975 (8%)

Query: 218  ILLQLASSPRVWYRTADDDILVLVPFDMLD-----DDDPWIRTTDFTPSGAIGRCNSYRI 272
            +++Q+  +P++ +   D  I +L  F M+D      D+ WIRTTDFT S  IG+  ++ +
Sbjct: 170  LVIQVIGAPKI-FEKEDQPINLL--FGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCL 226

Query: 273  SISSR-HRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFCIHYEEGISFE 331
             +    +     +      E R     +    +     +  VP+ DP         + FE
Sbjct: 227  ELPVHLNVPDFRENFANYAEHRASTYLIESGSSYSSNANKLVPVVDPPPGFD----LPFE 282

Query: 332  IMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQ 391
            I+F +N ++    +    L    + LL    ++++ A + H     + + ++C       
Sbjct: 283  ILFKLNTLVQNACLPGPALDLDVYQLL--NPKKIDRALIDHCLEKLFYLGESCYE---PA 337

Query: 392  EWLLKDPELYKGPKQI---------DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKD 442
             WL K  +      ++         D +V + R+ +TP + Y   PEV +SNRVLR Y  
Sbjct: 338  RWLRKQYKELSSKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSK 397

Query: 443  LADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLC 502
              + FLRV+F+DE L+ + +  LS            +S  ++T+++ R+ S+L  G  + 
Sbjct: 398  YINNFLRVSFVDEDLEKVRSMDLS----------PRSSTQRRTKLYDRIYSVLRDGIVIG 447

Query: 503  GRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSST 561
             +KF FLAFSSSQLR+ SAW F+     +   I+ WMG F   +N+AK AAR+GQ FSS+
Sbjct: 448  DKKFEFLAFSSSQLRENSAWMFAPIEGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSS 507

Query: 562  YATVEVPPTEVDPELPDIK----RNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQ 617
              T+ V   E++  +PD++       YVFSDGIGKI+ + A  VA+K  L     P A+Q
Sbjct: 508  RETLNVRSDEIEV-IPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGL-TEFSPSAFQ 565

Query: 618  IRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLS 677
            IRY G KGVVA  P      ++SLR+SM+KF+S +T L++ +W+++QP ++NRQ+ITLLS
Sbjct: 566  IRYGGYKGVVAVDPNSSK--KLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLS 623

Query: 678  TLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL-TAACAEQGNTAAIMLSAGFNPQTEP 736
            TL V D +F   Q  ++ +L+ +L D   A E L   A  E  N    ++  G+ P  EP
Sbjct: 624  TLGVEDSVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEP 683

Query: 737  HLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFS 796
             L  ML   RA++L  LR K RIF+  GR +MGCLDE   LE GQ  +Q S+P       
Sbjct: 684  FLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPM------ 737

Query: 797  KHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPH 856
            + G RF       +I G VV+AKNPCLHPGD+R+LEAV+ P L+H+ DC+VFPQKG RPH
Sbjct: 738  RPGRRF-------IITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPH 790

Query: 857  TNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHM 916
             NE SGSDLDGD+YFV WD+ LIPP  ++  PM+Y    A+ L   V   ++ E+FA ++
Sbjct: 791  PNECSGSDLDGDIYFVCWDQELIPP--RTSEPMDYTPEPAQILDHDVTIEEVEEYFANYI 848

Query: 917  VNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYP 976
            VN++LG I NAH   AD     A  + CI LA   + AVDFPKTG    +P HL  K YP
Sbjct: 849  VNDSLGIIANAHTAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLYVKEYP 908

Query: 977  DFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFI 1036
            DFM K    +Y+S  ++G+L+R+ K+     IS+ S   ++     YD D+EV    +++
Sbjct: 909  DFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKS-FTLDVALKSYDKDMEVDGFEEYV 967

Query: 1037 ADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALR 1096
             +A++ K +YD +L  L++ Y +  E E+++G I  M K  ++++    E +  +  ALR
Sbjct: 968  DEAFHYKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD--AESIGRAVRALR 1025

Query: 1097 KEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVL 1156
            KE   +F   + + E             KASAWY +TYH  +     +   +D       
Sbjct: 1026 KETLSLFNATEEENE-----------SAKASAWYHITYHSSYWGLYNEGLNRDH-----F 1069

Query: 1157 LSFAWIANDYLARIK 1171
            LSFAW   D L RIK
Sbjct: 1070 LSFAWCVYDKLVRIK 1084


>gi|383100937|emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 401/1183 (33%), Positives = 599/1183 (50%), Gaps = 137/1183 (11%)

Query: 19   GFDRNVKAAELVKYLENEVGG--VWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVE 76
            GF   V A E+ K+LE   G   V+  +++    P +  P  +                 
Sbjct: 9    GFPNGVSAEEVKKFLERLTGSGTVYAIKVRQ---PKKGGPRVF----------------- 48

Query: 77   PHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQ----RGRTSTPFKL 132
              A V F    Y  + +  A    L+     L       N F ++Q    + R S    +
Sbjct: 49   --AIVQFTNERYARQIITGAAERRLYYGRSYL-------NAFEVDQDIVPKPRASL-HNI 98

Query: 133  PDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIK 192
              + +  G  VS  +F   W    S  D  V    G  K  F+             +  +
Sbjct: 99   SGLKMYFGCQVSTQKFLTLW----SAQDVCVSFGIGMRKLHFS------------FSWYQ 142

Query: 193  CEFKVEFLVREINLVKQYSE--FSCVAILLQLASSPRVWYRTADDDILVLVPFDMLD--- 247
             ++++E     I  +  +S    S   +++Q+  +P++ +   D  I +L  F M+D   
Sbjct: 143  KDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKI-FEKEDQPINLL--FGMMDFYS 199

Query: 248  --DDDPWIRTTDFTPSGAIGRCNSYRISISSR-HRGKLSKVITYLGERRVQVDSLSRPIT 304
               D+ WIRTTDFT S  IG+  ++ + +    +     +      E R     +    +
Sbjct: 200  DGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASPFLIESGSS 259

Query: 305  IREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSRE 364
                 +  VP+ DP         + FEI+F +N ++    +    L    + LL    ++
Sbjct: 260  YSSNANKLVPVVDPPPGFD----LPFEILFKLNTLVQNACLPGPALDLDVYQLL--NPKK 313

Query: 365  VNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQI---------DDIVEVRR 415
             N A + H     + + ++C        WL K  +      ++         D +V + R
Sbjct: 314  YNRALIDHCLEKLFHLGESCYE---PARWLRKQYKELSSKGKLPLSPTISLDDGLVYMYR 370

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475
            + +TP + Y   PEV +SNRVLR Y    + FLRV+F+DE L+ + +  LS         
Sbjct: 371  VQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLS--------- 421

Query: 476  ITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE-DGKTSVLD 534
               +S  ++T+++ R+ S+L  G  +  +KF FLAFSSSQLR+ SAW F+  DG TS   
Sbjct: 422  -PRSSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDGLTSA-H 479

Query: 535  IKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK----RNGYVFSDG 589
            I+ WMG F   +N+AK AAR+GQ FSS+  T+ V   E++  +PD++       YVFSDG
Sbjct: 480  IRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIE-VIPDVEIISLGTRYVFSDG 538

Query: 590  IGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQ 649
            IGKI+ + A  VA+K  L     P A+QIRY G KGVVA  P      ++SLR+SM+KF+
Sbjct: 539  IGKISAEFARRVAKKCGL-TEFSPSAFQIRYGGYKGVVAVDPNSSK--KLSLRKSMSKFE 595

Query: 650  SHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFE 709
            S +T L++ +W+++QP ++NRQ+ITLLSTL V D +F   Q  ++ +L+ +L D   A E
Sbjct: 596  SENTKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVVDRLDAILTDPLEAHE 655

Query: 710  VL-TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLM 768
             L   A  E  N    ++  G+ P  EP L  ML   RA++L  LR K RIF+  GR +M
Sbjct: 656  ALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMM 715

Query: 769  GCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDI 828
            GCLDE   LE GQ  +Q S+P       + G RF       +I G VV+AKNPCLHPGD+
Sbjct: 716  GCLDETRTLEYGQVVVQYSDPM------RPGRRF-------IITGPVVVAKNPCLHPGDV 762

Query: 829  RILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPP 888
            R+LEAV+ P L+H+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD+ LIPP  ++  P
Sbjct: 763  RVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPP--RTSEP 820

Query: 889  MEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLA 948
            M+Y    A+ L   V   ++ E+FA ++VN++LG I NAH   AD     A  + CI LA
Sbjct: 821  MDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELA 880

Query: 949  ELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDI 1008
               + AVDFPKTG    +P HL  K YPDFM K    +Y+S  ++G+L+R+ K+     I
Sbjct: 881  RKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLI 940

Query: 1009 SVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTG 1068
            S+ S   ++     YD D+EV    +++ +A++ K +YD +L  L++ Y +  E E+++G
Sbjct: 941  SIKS-FTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIKTEAEILSG 999

Query: 1069 HIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASA 1128
             I  M K  ++++    E +  +  ALRKE   +F   + + E             KASA
Sbjct: 1000 GIMRMSKSFTKRRD--AESIGRAVRALRKETLSLFNATEEENE-----------SAKASA 1046

Query: 1129 WYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
            WY VTYH  +      L  +   R   L+ FAW   D L RIK
Sbjct: 1047 WYHVTYHSSY----WGLYNEGLNRDHFLI-FAWCVYDKLVRIK 1084


>gi|449457379|ref|XP_004146426.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
 gi|449491619|ref|XP_004158954.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
 gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase 1a [Cucumis sativus]
          Length = 1130

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 402/1117 (35%), Positives = 573/1117 (51%), Gaps = 85/1117 (7%)

Query: 78   HAFVHFAMPTYVTRAVDAAGR----TELFLNGRALKVSLGPENPFRLNQRGRTSTPFKLP 133
            +A V F   T     +  A +       +L  RA +V + P        + RT   + L 
Sbjct: 48   YAIVQFTSATQAELIISLANQRLWYGSSYLKARATEVDIVP--------KPRTYM-YTLE 98

Query: 134  DVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKC 193
            ++ +  G  VS ++F V W G      F +            R + F LK  +       
Sbjct: 99   ELLLCFGCQVSTEKFRVLWEGNVDLVTFGIG----------MRKMNFHLKYKS------V 142

Query: 194  EFKVEFLVREINLVKQY--SEFSCVAILLQLASSPRVWYRTADDDILV----LVPFDMLD 247
            E+++E     I  ++ +   + S   +L+QL+ +PR++ + A +   +    L+ F    
Sbjct: 143  EYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIYKKVAPNSGQIFDNPLLNFFKEA 202

Query: 248  DDDPWIRTTDFTPSGAIGRCNSYRISI-SSRHRGKLSKVITYLGERRVQVDSLSRPITIR 306
             DD W+RTTDFT S +IG+ +S  + + + R      +   Y  E   +         I 
Sbjct: 203  SDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQNFAYYEEFEHEFR------LID 256

Query: 307  EEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLR---GQSR 363
            E+ +F                + ++I+F +NA++  G I    L  SF+ L+        
Sbjct: 257  EDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLLDASFYRLVERIITTRI 316

Query: 364  EVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKA 423
            E    AL+ ++  K   +D    L        + P         D +V VRR+ ITP K 
Sbjct: 317  EFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLDDGLVYVRRVQITPCKV 376

Query: 424  YCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQ 483
            +   PEV +SNRVLR +    D FLRV+F+DE    M +  L       +  ++  S   
Sbjct: 377  FFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDL-------LPRMSSKSEDG 429

Query: 484  KTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFT 543
            KT +++R+ S+L  G  +  + F FLAFSSSQLRD S W F+         I+ WMG F 
Sbjct: 430  KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAYIRAWMGDFR 489

Query: 544  D-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK-RNG---YVFSDGIGKITPDLA 598
              KN AK AAR+GQ F S+   + V   E +  +PDI+ + G   YVFSDGIGKI+   A
Sbjct: 490  HIKNPAKYAARLGQSFGSSTEALSVASNEREI-IPDIEVQQGEIKYVFSDGIGKISSKFA 548

Query: 599  MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEIC 658
             EVA K        P A+QIRY G KGVVA  P     I++SLR+SM KF+S +T L++ 
Sbjct: 549  KEVAAKCGFQA--VPSAFQIRYGGYKGVVAVDPYST--IKLSLRKSMCKFESDNTKLDVL 604

Query: 659  SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT-AACAE 717
              +++QP FLNRQ+ITL+STL V DE+F   Q   + +L+ +L D   A E L   +  E
Sbjct: 605  GHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGE 664

Query: 718  QGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVL 777
              N    ML  G+ P  EP+L  ML   RA++L  LR K+RIF+P GR +MGCLDE   L
Sbjct: 665  NTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETRTL 724

Query: 778  EGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP 837
            E GQ F+Q+S     N            +   VI+G V +AKNPCLHPGD+R+L+AV+ P
Sbjct: 725  EYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIP 784

Query: 838  ELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAK 897
             L+H+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD  LIP   +  PPM+Y  A   
Sbjct: 785  GLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP--SRQIPPMDYTPAPPN 842

Query: 898  TLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDF 957
             L R V   DI E+F  +MVN++LG I NAH   AD   + A    C+ LA+L + AVDF
Sbjct: 843  ELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAVDF 902

Query: 958  PKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDIN 1017
            PKTG    +P+HL  K +PDFM K    SY+SNK++G+L+R  KD         S +   
Sbjct: 903  PKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDI----APTLSHIRSF 958

Query: 1018 PVDIH---YDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMP 1074
              D+    YD D+EV    D++ DA+  K +YD +L  LL+ Y +  E E+++G I  M 
Sbjct: 959  TRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMS 1018

Query: 1075 KYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTY 1134
            K  +R++    E +  +  +LRKE R  F   +      ++   + LF  KASAWY VTY
Sbjct: 1019 KSFTRRRD--AEAINLAVRSLRKEARTWFNAREG-----ADSNSDDLFA-KASAWYYVTY 1070

Query: 1135 HPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
            H  +     +  ++D       LSF W   D L +IK
Sbjct: 1071 HHSYWGCYNEGMKRDH-----YLSFPWCVYDKLMQIK 1102


>gi|24935275|gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  570 bits (1469), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 354/971 (36%), Positives = 530/971 (54%), Gaps = 72/971 (7%)

Query: 218  ILLQLASSPRVWYRTADDDILVLVPFDMLDD--DDPWIRTTDFTPSGAIGRCNSYRISIS 275
            +++Q+  +P+++ +      L+    D   D  D+ WIRTTDFT S  IG+  ++ + + 
Sbjct: 169  LVIQVIGAPKIFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELP 228

Query: 276  SR-HRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFCIHYEEGIS--FEI 332
               +     +      E R     +    +     +  VP+ DP        G S  FEI
Sbjct: 229  VHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDP------PPGFSLPFEI 282

Query: 333  MFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKR-----L 387
            +F +N ++    ++   L   F+ LL    ++ + A + H     + + + C        
Sbjct: 283  LFKLNTLVQNACLSGPALDLDFYRLL--NQKKYDRALIDHCLEKLFHLGECCYEPAHWLR 340

Query: 388  KLVQEWLLKDPELYKGPKQIDD-IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADR 446
               ++W+ K          +DD +V + R+ +TP + Y   PEV +SNRVLR Y    + 
Sbjct: 341  DEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINN 400

Query: 447  FLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKF 506
            FLRV+F+DE L+ + +  LS            +S  ++T+++ R+ S+L  G  +  +KF
Sbjct: 401  FLRVSFVDEDLEKVRSMDLS----------PRSSTQRRTKLYDRIYSVLRDGIVIGDKKF 450

Query: 507  SFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATV 565
             FLAFSSSQLR+ SAW F+   + +   I+ WMG F   +N+AK AAR+GQ FSS+  T+
Sbjct: 451  EFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETL 510

Query: 566  EVPPTEVDPELPDIK----RNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYA 621
             V   E++  +PD++       YVFSDGIGKI+ + A +VA+K  L     P A+QIRY 
Sbjct: 511  NVRSDEIEV-IPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGL-TEFSPSAFQIRYG 568

Query: 622  GCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNV 681
            G KGVVA  P      ++SLR+SM+KF+S +T L++ +W+++QP ++NRQ+ITLLSTL V
Sbjct: 569  GYKGVVAVDPNSSK--KLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGV 626

Query: 682  PDEMFWSMQDSMLSKLNQMLVDSDVAFEVL-TAACAEQGNTAAIMLSAGFNPQTEPHLRG 740
             D +F   Q  ++ +L+ +L     A E L   A  E  N    ++  G+ P  EP L  
Sbjct: 627  TDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSM 686

Query: 741  MLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGS 800
            ML   RA++L  LR K RIF+  GR +MGCLDE   LE GQ  +Q S+P       + G 
Sbjct: 687  MLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPM------RPGR 740

Query: 801  RFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEA 860
            RF       +I G VV+AKNPCLH GD+R+L+AV+ P L+H+ DC+VFPQKG RPH NE 
Sbjct: 741  RF-------IITGPVVVAKNPCLHSGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNEC 793

Query: 861  SGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNEN 920
            SGSDLDGD+YFV WD+ L+PP  ++  PM+Y     + L   V   ++ E+FA ++VN++
Sbjct: 794  SGSDLDGDIYFVCWDQELVPP--RTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDS 851

Query: 921  LGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMG 980
            LG I NAH   AD     A  + CI LA+  +TAVDFPKTG    +P HL  K YPDFM 
Sbjct: 852  LGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFME 911

Query: 981  KEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAW 1040
            K    +Y+S  ++G+L+R+ K+     IS+ S   ++     YD D+EV    +++ +A+
Sbjct: 912  KPDKPTYESKNVIGKLFREVKERAPPLISIKS-FTLDVASKSYDKDMEVDGFEEYVDEAF 970

Query: 1041 NQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFR 1100
             QK +YD +L  L++ Y +  E E+++G I  M K  ++++    E +  +  ALRKE  
Sbjct: 971  YQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD--AESIGRAVRALRKE-- 1026

Query: 1101 QVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFA 1160
                       L +  E+      KASAWY VTYH  +     +   +D       LSFA
Sbjct: 1027 --------TLSLFNASEEEENESAKASAWYHVTYHSSYWGLYNEGLNRDH-----FLSFA 1073

Query: 1161 WIANDYLARIK 1171
            W   D L RIK
Sbjct: 1074 WCVYDKLVRIK 1084


>gi|297805194|ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
 gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score =  570 bits (1469), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 355/951 (37%), Positives = 520/951 (54%), Gaps = 80/951 (8%)

Query: 243  FDMLD-----DDDPWIRTTDFTPSGAIGRCNSYRISISSR-HRGKLSKVITYLGERRVQV 296
            F M+D      D+ WIRTTDFT S  IG+  ++ + +    +     +      E R   
Sbjct: 182  FGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASP 241

Query: 297  DSLSRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFD 356
              +    +     +  VP+ DP         + FEI+F +N ++    +    L    + 
Sbjct: 242  FLIESGSSYSSNANKLVPVVDPPPGFD----LPFEILFKLNTLVQNACLPGPALDLDVYQ 297

Query: 357  LLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQI--------- 407
            LL    ++++ A + H     + + ++C        WL K  +      ++         
Sbjct: 298  LL--NPKKIDRALIDHCLEKLFYLGESCYE---PARWLRKQYKELSSKGKLPLSPTISLD 352

Query: 408  DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSY 467
            D +V + R+ +TP + Y   PEV +SNRVLR Y    + FLRV+F+DE L+ + +  LS 
Sbjct: 353  DGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLS- 411

Query: 468  FIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE- 526
                       +S  ++T+++ R+ S+L  G  +  +KF FLAFSSSQLR+ SAW F+  
Sbjct: 412  ---------PRSSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 462

Query: 527  DGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK----R 581
            DG TS   I+ WMG F   +N+AK AAR+GQ FSS+  T+ V   E++  +PD++     
Sbjct: 463  DGLTSA-HIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIE-VIPDVEIISLG 520

Query: 582  NGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSL 641
              YVFSDGIGKI+ + A  VA+K  L     P A+QIRY G KGVVA  P      ++SL
Sbjct: 521  TRYVFSDGIGKISAEFARRVAKKCGL-TEFSPSAFQIRYGGYKGVVAVDPNSSK--KLSL 577

Query: 642  RESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
            R+SM+KF+S +T L++ +W+++QP ++NRQ+ITLLSTL + D +F   Q  ++ +L+ +L
Sbjct: 578  RKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGIKDSVFEKKQREVVDRLDAIL 637

Query: 702  VDSDVAFEVL-TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIF 760
             D   A E L   A  E  N    ++  G+ P  EP L  ML   RA++L  LR K RIF
Sbjct: 638  TDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIF 697

Query: 761  VPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKN 820
            +  GR +MGCLDE   LE GQ  +Q S+P       + G RF       +I G VV+AKN
Sbjct: 698  ISGGRSMMGCLDETRTLEYGQVVVQYSDPM------RPGRRF-------IITGPVVVAKN 744

Query: 821  PCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP 880
            PCLHPGD+R+LEAV+ P L+H+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD+ LIP
Sbjct: 745  PCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIP 804

Query: 881  PSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGAL 940
            P  ++  PM+Y    A+ L   V   ++ E+FA ++VN++LG I NAH   AD     A 
Sbjct: 805  P--RTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAF 862

Query: 941  DENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQS 1000
             + CI LA   + AVDFPKTG    +P HL  K YPDFM K    +Y+S  ++G+L+R+ 
Sbjct: 863  SDPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIGKLFREV 922

Query: 1001 KDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVN 1060
            K+     IS+ S   ++     YD D+EV    +++ +A++ K +YD +L  L++ Y + 
Sbjct: 923  KERAPPLISIKS-FTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIK 981

Query: 1061 REEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNA 1120
             E E+++G I  M K  ++++    E +  +  ALRKE   +F   + + E         
Sbjct: 982  TEAEILSGGIMRMSKSFTKRRD--AESIGRAVRALRKETLSLFNATEEENE--------- 1030

Query: 1121 LFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
                KASAWY VTYH  +     +   +D       LSFAW   D L RIK
Sbjct: 1031 --SAKASAWYHVTYHSSYWGLYNEGLNRDH-----FLSFAWCVYDKLVRIK 1074


>gi|413938756|gb|AFW73307.1| putative RNA-dependent RNA polymerase [Zea mays]
          Length = 933

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 369/945 (39%), Positives = 526/945 (55%), Gaps = 80/945 (8%)

Query: 247  DDDDPWIRTTDFTPSGAIGRCNSYRISISSR-HRGKLSKVITYLGERRVQVDSL------ 299
            D D+ W RT DFTPS +IG+ +   + +  +    ++     Y  E+ +  +        
Sbjct: 33   DTDEQWTRTIDFTPSASIGQSSILCLEVPQQCELPRIGDYFVYYKEQNLDFECRNGYSYS 92

Query: 300  --SRPITIREEPDF-EVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFD 356
              S  + I + PD+ EVP               +EI+F +N ++  G ++   +  SFF 
Sbjct: 93   CGSNLVPIVKSPDYIEVP---------------YEILFKINHLVQNGTLSGPTVDHSFFR 137

Query: 357  LLRGQSR---EVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQI---DDI 410
             +  +      +  A LK  Y  K    +    L +    + K     +    I   D +
Sbjct: 138  HVSPKFEPIDHIKRALLKMTY-LKSTCLNPTDWLSVQYSRIRKSRHASQKLSNISLDDGL 196

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V V R+ +TP K Y   PE+ +SNRV+R +    D FLR++F+DE  + + +  LS    
Sbjct: 197  VYVHRVQVTPAKVYFYGPEINVSNRVVRHFSADIDNFLRISFVDEDCEKLRSADLS---- 252

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKT 530
               R  + N  +++T ++ RV S+LS G  +  + F FLAFSSSQLRD SAW F+     
Sbjct: 253  --PRSTSGND-ARRTALYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDNSAWMFASRQGL 309

Query: 531  SVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFS 587
            +  DI+KWMG F D +N+AK AAR+GQ FSS+  T++V  +EV+  +PDI  NG  Y+FS
Sbjct: 310  TASDIRKWMGDFRDIRNVAKYAARLGQSFSSSTETLKVHKSEVE-RIPDIT-NGTKYIFS 367

Query: 588  DGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNK 647
            DG+GKI+ + A+EVA K KL     P  +QIRY G KGVVA         ++SLR+SM+K
Sbjct: 368  DGVGKISANFAVEVAMKCKLK-RFAPSVFQIRYGGYKGVVAV--DTRSNHKLSLRKSMSK 424

Query: 648  FQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA 707
            FQS + TL++ +++++QP FLNRQ+ITLLSTL V D +F   Q   L +LN+M+ +   A
Sbjct: 425  FQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVSDNVFELKQKEALRQLNRMVTEPQAA 484

Query: 708  FE-VLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRW 766
             E V      E  N    +LS G+ P  EP+L  +L   RA++L  L+ K+RIF+  GR 
Sbjct: 485  REAVELMPMGEVTNVVKELLSCGYQPDHEPYLSMLLQTFRASKLLELKTKSRIFITQGRA 544

Query: 767  LMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPG 826
            +MGCLDE   L+ GQ F+Q S               A+  +  V+ G VV+AKNPCLHPG
Sbjct: 545  MMGCLDETCTLKYGQVFVQASYS-------------ADDHRKVVVTGKVVVAKNPCLHPG 591

Query: 827  DIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW 886
            DIR+L+AVD P LHHL+DC+VFPQ+G RPH NE SGSDLDGD+YFV+WD +LIP   +  
Sbjct: 592  DIRVLQAVDVPALHHLFDCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPHLIP--SRLV 649

Query: 887  PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCIL 946
             PM+Y  A A+TL   V   +I E+F  ++VNE+LG I NAHVV AD     A    C+ 
Sbjct: 650  DPMDYTPASAETLDHDVTIEEIQEYFTNYIVNESLGIIANAHVVFADQERMKAESPPCVQ 709

Query: 947  LAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDE 1006
            LA+L + AVDFPKTG    +P  L  K YPDFM K    +Y+S  ++G+LYR+ K     
Sbjct: 710  LAKLFSIAVDFPKTGVPALIPHELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPH 769

Query: 1007 DISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELV 1066
                + EV        YDTDL V    D+I +A   K  YD +L  L++ Y +  E E++
Sbjct: 770  IKHFTREV----ARRSYDTDLIVDGYEDYITEAIEFKEEYDFRLGNLMDHYGIKSEAEII 825

Query: 1067 TGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKA 1126
            +G I  M K N  K  +  + ++ +  +LRKE R  F +M +      ED ++A+ E KA
Sbjct: 826  SGCILKMAK-NFTKSSD-ADAIRMAVRSLRKEARSWFNEMST-----GEDGQDAM-EAKA 877

Query: 1127 SAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
            SAWY VTYH ++     +  ++       L+SF W   D L  IK
Sbjct: 878  SAWYHVTYHQQYWGSYNEGYDRPH-----LISFPWCVYDKLVAIK 917


>gi|113205326|gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1021

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 390/1061 (36%), Positives = 557/1061 (52%), Gaps = 140/1061 (13%)

Query: 206  LVKQY-SEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSG-- 262
            +VK++ S F    +  +L  +PR++ R  +        F     DD W+RTTDF PS   
Sbjct: 1    MVKEHLSVFQIYNLGGRLFGAPRIYKRLENS----CYSFFKETPDDQWVRTTDFAPSWIG 56

Query: 263  -AIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFC 321
             +   C  +R  +   H     +   +  ER   +   +       +    VP   P   
Sbjct: 57   LSSSLCLQFRRGV---HLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQP--- 110

Query: 322  IHYEEGIS--FEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNV--AALKHIYSYK 377
                EGI+  ++I+F +++++  G I    L+  FF L+  Q R V     AL+ +Y  K
Sbjct: 111  ---PEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQRRNVACIEQALEKLYYLK 167

Query: 378  WPVFDACKRLKLVQEWLLKDPELYKGPK-QIDD-IVEVRRLVITPTKAYCLPPEVELSNR 435
               +D  + L    +  LK  +  K P   +DD +V VRR+++TP K Y   PEV +SNR
Sbjct: 168  ECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNR 227

Query: 436  VLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSIL 495
            VLR Y +  D FLRV+F+DE  + + +  L      + +  T N    +T +++R+ S L
Sbjct: 228  VLRNYSEDIDNFLRVSFVDEEWEKLYSTEL------LPKASTGNGI--RTNIYERILSTL 279

Query: 496  SGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARM 554
              GF +  +KF FLAFSSSQLRD S W F+     +  DI+ WMG F+  KN+AK AAR+
Sbjct: 280  RKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARL 339

Query: 555  GQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQKLKLDVNPP 612
            GQ F S+  T+ V   E++  +PD+K +G  YVFSDGIGKI+ D A  VA K  L   P 
Sbjct: 340  GQSFGSSKETLSVLRHEIE-VIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQYTP- 397

Query: 613  PCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQI 672
              A+QIRY G KGVVA  P     ++++LR+SM+K++S +  L++  W+++QP FLNRQ+
Sbjct: 398  -SAFQIRYGGYKGVVAVDPYSS--MKLTLRKSMSKYESDNNKLDVLGWSKYQPCFLNRQL 454

Query: 673  ITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT-AACAEQGNTAAIMLSAGFN 731
            ITLLSTL V D++    Q   + +L+ +L DS  A E L   +  E  N    ML+ G+ 
Sbjct: 455  ITLLSTLGVRDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYM 514

Query: 732  PQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFL 791
            P  EP L  ML   RA++L  LR K+RIF+P GR +MGCLDE   LE GQ F+Q    F 
Sbjct: 515  PDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQ----FT 570

Query: 792  GNC---FSKHGSRFAETKKLQ---VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDC 845
            G     FS+    F  ++      ++KG VV+AKNPCLHPGDIR+L AVD P LHH+ DC
Sbjct: 571  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 630

Query: 846  LVFPQKGDR---------------------------------PHTNEASGSDLDGDLYFV 872
            +VFPQKG R                                 PH NE SGSDLDGD+YFV
Sbjct: 631  VVFPQKGKRLGMYFNCFPTSEVEVKSAYTLPSSDPTLWYLTGPHPNECSGSDLDGDIYFV 690

Query: 873  TWDENLIPPSKKSWPPMEYNAAEAKTLTRPVD-------------------------QRD 907
             WD+++IPP +    PMEY  A +  L   V                           ++
Sbjct: 691  CWDQDMIPPRQVQ--PMEYPPAPSIQLDHDVTIERGDWPVCATTVQVLRNSFSPVCLLQE 748

Query: 908  IIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMP 967
            + E+F  ++VN++LG I NAHVV AD     A+ + C  LAEL + AVDFPKTG    +P
Sbjct: 749  VEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIP 808

Query: 968  AHLKPKLYPDFMGKEAYQ-SYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDI---HY 1023
            + L+PK YPDFM K   + +Y S +++G+L+R+ KD   +    +S   I   D+    Y
Sbjct: 809  SQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQ----ASSTAIFTRDVARRSY 864

Query: 1024 DTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGE 1083
            D DLEV    D+I +A++ K  YD +L  L++ Y +  E E+++G I    K   R++  
Sbjct: 865  DADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKD- 923

Query: 1084 LKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPE-WVKKS 1142
              E +  +  ALRKE R  F++ +   ++L           KASAWY VTYHP  W   +
Sbjct: 924  -AEAISIAVRALRKEARTWFKRRNDIDDMLP----------KASAWYHVTYHPTYWGCYN 972

Query: 1143 LDLQEQDSARSVVLLSFAWIANDYLARI---KIRCREMANI 1180
              L+          +SF W   D L +I   K R R + N+
Sbjct: 973  QGLKRDH------FISFPWCVYDQLIQIKKEKARNRPVLNL 1007


>gi|308080205|ref|NP_001183933.1| putative RNA-dependent RNA polymerase [Zea mays]
 gi|254838301|gb|ACT83377.1| putative RNA-dependent RNA polymerase [Zea mays]
          Length = 1108

 Score =  566 bits (1459), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 394/1073 (36%), Positives = 567/1073 (52%), Gaps = 110/1073 (10%)

Query: 130  FKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHA 189
            F L D+ + +G LV  +     +R       F  D           + I F L  S    
Sbjct: 99   FSLEDIVLHLGCLVKENILSALFRASNVSVQFGFD----------MKKIYFYL--SYNFT 146

Query: 190  VIKCEFKVEFLVREINLVKQYSEFSCVAILL-QLASSPRVWYRTADDDILVLVPFDMLDD 248
              K E   E  + E+ L +  +  S    LL Q+ ++P+++       +L   P  M +D
Sbjct: 147  KFKLELSYE-SIWEMQLHRPPAYRSRTQFLLIQVQAAPKIY------KLLPGRPGLMFED 199

Query: 249  ----------DDPWIRTTDFTPSGAIGRCNSYRISISSR-HRGKLSKVITYLGERRVQVD 297
                      D+ W RT DFTPS +IG+ + Y      +    ++     Y  E+ +  +
Sbjct: 200  PFFNWFRDEKDEQWTRTIDFTPSASIGQSSIYVWRCQQQCELPRIGDYFVYYKEQNLDFE 259

Query: 298  SL--------SRPITIREEPDF-EVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQH 348
                      S  + I + PD+ EVP               +EI+F +N ++  G ++  
Sbjct: 260  CRNGYSYSCGSSLVPIVKSPDYIEVP---------------YEILFKINHLVQNGTLSGS 304

Query: 349  QLSDSFFDLLRGQSR---EVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPK 405
             +  SFF  +  +      +  A LK  Y  K    +    L +    + K     +   
Sbjct: 305  TVDHSFFRHVSPKFEPIDHIKRALLKMTY-LKSTCLNPTDWLSVQYSRIRKSRHASQKLS 363

Query: 406  QI---DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNA 462
             I   D +V V R+ +TP K Y   PE+ +SNRV+R +    D FLR++F+DE  + + +
Sbjct: 364  NISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRHFSADIDNFLRISFVDEDCEKLRS 423

Query: 463  NVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAW 522
              LS       R  + N  +++T ++ RV S+LS G  +  + F FLAFSSSQLRD SAW
Sbjct: 424  ADLS------PRSTSGND-ARRTALYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDNSAW 476

Query: 523  FFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKR 581
             F+     +  DI+KWMG F D +N+AK AA +GQ FSS+  T++V  +EV+  +PDI  
Sbjct: 477  MFASRQGLTASDIRKWMGDFRDIRNVAKYAAILGQSFSSSTETLKVHKSEVE-RIPDIT- 534

Query: 582  NG--YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRM 639
            NG  Y+FSDG+GKI+ + A+EVA K KL     P  +QIRY G KGVVA         ++
Sbjct: 535  NGTKYIFSDGVGKISANFAVEVAMKCKLK-RFAPSVFQIRYGGYKGVVAVDTRSNH--KL 591

Query: 640  SLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQ 699
            SLR+SM+KFQS + TL++ +++++QP FLNRQ+ITLLSTL V D +F   Q   L +LN+
Sbjct: 592  SLRKSMSKFQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVSDNVFELKQKEALRQLNR 651

Query: 700  MLVDSDVAFE-VLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKAR 758
            M+ +   A E V      E  N    +LS G+ P  EP+L  +L   RA++L  L+ K+R
Sbjct: 652  MVTEPQAAREAVELMPMGEVTNVVKELLSCGYQPDHEPYLSMLLQTFRASKLLELKTKSR 711

Query: 759  IFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIA 818
            IF+  GR +MGCLDE   L+ GQ F+Q S               A+  +  V+ G VV+A
Sbjct: 712  IFITQGRAMMGCLDETCTLKYGQVFVQASYS-------------ADDHRKVVVTGKVVVA 758

Query: 819  KNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENL 878
            KNPCLHPGDIR+L+AVD P LHHL+DC+VFPQ+G RPH NE SGSDLDGD+YFV+WD +L
Sbjct: 759  KNPCLHPGDIRVLQAVDVPALHHLFDCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPHL 818

Query: 879  IPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYG 938
            IP   +   PM+Y  A A+TL   V   +I E+F  ++VNE+LG I NAHVV  D     
Sbjct: 819  IP--SRLVDPMDYTPASAETLDHDVTIEEIQEYFTNYIVNESLGIIANAHVVFTDQERMK 876

Query: 939  ALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYR 998
            A    C+ LA+L + AVDFPKTG    +P  L  K YPDFM K    +Y+S  ++G+LYR
Sbjct: 877  AESPPCVQLAKLFSIAVDFPKTGVPALIPHELHVKEYPDFMEKLDKVTYESKGVIGKLYR 936

Query: 999  QSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYK 1058
            + K         + EV        YDTDL V    D+I +A   K  YD +L  L++ Y 
Sbjct: 937  EIKKHTPHIKHFTREV----ARRSYDTDLIVDGYEDYITEAIEFKEEYDFRLGNLMDHYG 992

Query: 1059 VNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEK 1118
            +  E E+++G I  M K N  K  +  + ++ +  +LRKE R  F +M +      ED +
Sbjct: 993  IKSEAEIISGCILKMAK-NFTKSSD-ADAIRMAVRSLRKEARSWFNEMST-----GEDGQ 1045

Query: 1119 NALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
            +A+ E KASAWY VTYH ++     +  ++       L+SF W   D L  IK
Sbjct: 1046 DAM-EAKASAWYHVTYHQQYWGSYNEGYDRPH-----LISFPWCVYDKLVAIK 1092


>gi|449457381|ref|XP_004146427.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
 gi|449491623|ref|XP_004158955.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
 gi|316989901|gb|ADU77016.1| RNA-dependent RNA polymerase 1b [Cucumis sativus]
          Length = 1115

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 386/1066 (36%), Positives = 563/1066 (52%), Gaps = 82/1066 (7%)

Query: 137  VEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFK 196
            + +G  +S++ F V W       DF  +           R + F +       ++   ++
Sbjct: 102  LHLGCQISKESFSVLWTESNVSVDFGFE----------LRKLYFFISYPRVDYMLVLRYE 151

Query: 197  VEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLV-PFDMLDD--DDPWI 253
                + ++ L K + + S   +L+QL  +PR++ R A    L+   PF       D  W 
Sbjct: 152  N---IWQVELHKPHGQ-SVDYLLIQLFGAPRIYERDARSFGLITEDPFLNFSTEIDTQWF 207

Query: 254  RTTDFTPSGAIGRCNSYRISIS-SRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFE 312
            R TDFTPS +IG+  +  + I   R          Y  E + +  +L    T     +  
Sbjct: 208  RATDFTPSCSIGQSAALCLEIPYGRQLPNFHDKFAYFKEIKGKF-TLVSGSTYSSNVNL- 265

Query: 313  VPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVA--AL 370
            VP+  P   I+    + + I+F +N ++ +G +    L  SF+ ++  Q     V   AL
Sbjct: 266  VPVVTPPRTIN----LPYTILFKINLLVQQGCLPGPALDISFYQMVDSQIYNTAVIDHAL 321

Query: 371  KHIYSYKWPVFDACKRL--KLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPP 428
            K +   K   ++  K L  +  + + LK+P         + +V V R+ +TP K Y   P
Sbjct: 322  KKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLNEGLVYVHRVQVTPCKVYFCGP 381

Query: 429  EVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVF 488
            EV +SNRVLR+Y D  D FLRV+F+DE L  M +  LS   +  + D        KT++F
Sbjct: 382  EVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSPRASSSLED-------GKTKIF 434

Query: 489  KRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNI 547
            KR+ S+L  G  +  +KF FLA+SSSQLR+ +AW F+   + +   I++WMG F + +N+
Sbjct: 435  KRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAKIRQWMGDFHNIRNV 494

Query: 548  AKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRN-----GYVFSDGIGKITPDLAMEVA 602
            AK AAR+GQ F S+  T+ V   EV   +PDI+        YVFSDGIGKI    A +VA
Sbjct: 495  AKYAARLGQSFGSSTETLSVSRREVK-VIPDIEVESGSGVNYVFSDGIGKIAASFARKVA 553

Query: 603  QKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTR 662
            +K    +   P A+QIRYAG KGV++  P     +++SLR SM K++S  T L++ SW++
Sbjct: 554  KKC--GIRHTPSAFQIRYAGFKGVISVDPT--SSVKLSLRNSMLKYESTDTKLDVLSWSK 609

Query: 663  FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVD---SDVAFEVLTAACAEQG 719
            + P FLNRQ+ITLLSTL V D +F S Q  ++ +L+ +  D   +  A E+++    E  
Sbjct: 610  YHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALELMSPG--ENT 667

Query: 720  NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG 779
                 M+  G+ P +EP LR ML   R ++L  LR K+RIF+P GR +MGCLDE   LE 
Sbjct: 668  KILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLDETRNLEY 727

Query: 780  GQCFIQVSEPFLGNCFSKHGSRFA----ETKKLQVIKGFVVIAKNPCLHPGDIRILEAVD 835
            G+ F+Q S          H  R      ++ +  ++ G VV+AKNPCLHPGD+R+L AVD
Sbjct: 728  GEVFVQCSAHQ-----QLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTAVD 782

Query: 836  HPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAE 895
             P LHH+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD +LIPP +    PM+Y    
Sbjct: 783  VPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVE--PMDYTPVP 840

Query: 896  AKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAV 955
            ++ L   V   ++ E+FA +MVN++LG I NAH   AD     A+   CI LA+L + AV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 956  DFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVD 1015
            DFPKTG    +PA+L+ K YPDFM K    +Y+S  +LG+L+R   D+   +I      +
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRML-DSIGPNIKNIRSFN 959

Query: 1016 INP--VDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSM 1073
              P      YD D+EV    +++ DA   K +YD +L  L+  +K+  E EL++G   + 
Sbjct: 960  YTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTS 1019

Query: 1074 PKYNSRKQGELKERLKHSYSALRKEFRQVF-EKMDSDCELLSEDEKNALFERKASAWYQV 1132
                + K     E +  +  +LRKE R  F EK D     L       ++ R ASAWY V
Sbjct: 1020 SLSFTMKNE--AESIILAVKSLRKEARGWFNEKAD-----LHYGHHTNVYAR-ASAWYFV 1071

Query: 1133 TYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARI---KIRCR 1175
            TYH  +   S   +          LSF W   D L RI   KI CR
Sbjct: 1072 TYHHTYWGWSDGRKNHGH-----FLSFPWCVYDKLIRIKHRKINCR 1112


>gi|357117510|ref|XP_003560510.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
            distachyon]
          Length = 1138

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 359/1003 (35%), Positives = 549/1003 (54%), Gaps = 76/1003 (7%)

Query: 195  FKVEFLVREINLVKQYSEFSCVAILLQLASSPR---------VWYRTADDDILVLVPFDM 245
            +K+E L  +I    + S     AILLQL  +PR         V+ R  DD +        
Sbjct: 154  YKLEVLFEDIRDCFRCSLDGTSAILLQLTYAPRIHTAFSGPAVYSRFTDDRLHACKE--- 210

Query: 246  LDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITI 305
             D    W+R  DFTP+ + G+C++  I +       +  ++  L    V  +     + +
Sbjct: 211  -DAKFTWVRALDFTPNQSFGKCSTLVIKLD--EDAPMLHILNGLPFSGVLGEMAISSMDV 267

Query: 306  REEPDFEVPMSD-PFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSRE 364
                   VP+ D P  C      +S+E++F +N+++H G I    ++ + F  L      
Sbjct: 268  VGPSSKVVPLVDCPHGC-----SVSYEVLFRLNSLVHTGKIVAKHVNANLFTFLEQVPLH 322

Query: 365  VNVAALKHIYSYKWPVFDACK----RLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP 420
            ++    + +   +   ++  +     LKL Q  LL      +G      ++   R+ ITP
Sbjct: 323  ISRKIFEKMSKLESTCYEPLQFIESELKLTQNALLSSKREGEG-----KLMRCYRIHITP 377

Query: 421  TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
            +K YCL P+ E SN V++ + + A  F+RVTF+DE    ++ N +S         I    
Sbjct: 378  SKIYCLGPQEEASNYVVKHHSEYASDFVRVTFVDEDWSKLSVNAISA-------RIEQGF 430

Query: 481  FSQ--KTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKW 538
            FSQ  KT ++ R+ SIL  GF +  +KF FLAFS+SQLR+ S W F+ +   +   I++W
Sbjct: 431  FSQPFKTGLYYRILSILKEGFIIGPKKFKFLAFSASQLREGSVWMFASNDSLNAEGIRRW 490

Query: 539  MGRFTDK-NIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK----RNGYVFSDGIGKI 593
            MG F +  +++KCAARMGQ FSS+  TVEV P +V+ E+PDI+       Y+FSDGIGK+
Sbjct: 491  MGHFEEICSVSKCAARMGQLFSSSRQTVEVRPKDVE-EIPDIEVITNNMKYIFSDGIGKM 549

Query: 594  TPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHT 653
            +   A E+A ++ LD   PP A++IR+ G KGV+A  P+      +SLR SM KF+S   
Sbjct: 550  SVRFAKEIAYRIGLDHKNPPSAFEIRFGGYKGVIAVDPSSYRN--LSLRPSMRKFESDCR 607

Query: 654  TLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTA 713
             L I SW++ QP  +NR+II+LLSTL + DE+F  MQ   + +L++ML + ++A  VL  
Sbjct: 608  MLNITSWSKSQPCHVNREIISLLSTLGIRDEVFELMQQDDMCELDEMLTNKEIALSVLGK 667

Query: 714  ACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDE 773
              + +  TAA ML  G+ P +EP+L  +L   +  +L  +R K +I VP GR L+GCLDE
Sbjct: 668  IGSAETKTAADMLLQGYKPISEPYLLMILKAHQDNRLTDIRSKFKIHVPKGRVLLGCLDE 727

Query: 774  LGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEA 833
             G+L+ GQ +I++++       ++      +  K   + G V ++KNPCLHPGD+R+LEA
Sbjct: 728  TGILKYGQVYIRITKNNKEQKENEQPYFCKDDGKTVTLVGKVAVSKNPCLHPGDVRVLEA 787

Query: 834  VDHPELH--HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEY 891
            V   ELH   L DC+VFPQ+G+RPH NE SG DLDGDLYFVTWD+ LIP  +K+  PM+Y
Sbjct: 788  VCDLELHATKLVDCVVFPQRGERPHPNECSGGDLDGDLYFVTWDDRLIP--EKADTPMDY 845

Query: 892  NAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELA 951
             AA  + +   V   +I +    +M++++LG I NAH++HAD     A    C+ LA L 
Sbjct: 846  TAARPRIMDHVVTLEEIQQHVVNYMLSDSLGAISNAHLIHADRDPMKARSPECLRLAALH 905

Query: 952  ATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVS 1011
            + AVDF KTG    +P  L+P+ +PDFM +     Y S  +LG+LYR +    +   +++
Sbjct: 906  SMAVDFAKTGAPAELPRSLRPREFPDFMERWDKPMYISTGVLGKLYRAAVSRMESSHALA 965

Query: 1012 SEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIW 1071
            S+V  +P    YD +LEVP   +F+ DA      Y  +L  L+       E+E++TG+I 
Sbjct: 966  SQVQSSPT---YDRELEVPGFEEFLEDADKHYDLYVEKLTTLMNYDGAEHEDEMLTGNIR 1022

Query: 1072 SMPKY---NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASA 1128
            +   Y   + ++  ++K+R+  S +AL +E R  F        L +E+E +    R ASA
Sbjct: 1023 NRLLYLRKDRKRYSDMKDRIVDSVNALHEEVRGWFHSC-----LKAEEEAS----RVASA 1073

Query: 1129 WYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
            WY+VTYHP+  +     ++Q         SF WI  D L  IK
Sbjct: 1074 WYRVTYHPDHRRPE---KKQ-------FWSFPWIICDKLLAIK 1106


>gi|357477317|ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
 gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase [Medicago truncatula]
          Length = 1308

 Score =  564 bits (1453), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 355/984 (36%), Positives = 528/984 (53%), Gaps = 74/984 (7%)

Query: 217  AILLQLASSPRVWYRTADDDILVLVPFDML-----DDDDPWIRTTDFTPSGAIGRCNSYR 271
            A+LL+L   PR++ + A  ++      D       + +  W+RTTDF+   +IG   S+ 
Sbjct: 177  ALLLKLRYGPRIYQKMAGPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSFF 236

Query: 272  ISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSD-PFFCIHYEEGISF 330
              I        S V       R  +  LS    + +   F  P    P      +  + +
Sbjct: 237  WEIVEESFD--SDVFRSFPLYRENLKDLS----LEDGEKFCSPTETVPLVKCRLDSKLPY 290

Query: 331  EIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACK--RLK 388
            E +F +N+++H   I+   ++D   DLL     E      + ++      ++  K  R +
Sbjct: 291  ESLFQLNSLVHTQKISLASVNDELIDLLASLDAETKAVIFQKLHKMNSTCYEPLKYVRTQ 350

Query: 389  LVQEWLLKDPELYKGPKQI--DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADR 446
            L    + K   L    K++  ++I+   R +ITP+K YCL PE+E SN V++ +   A  
Sbjct: 351  LHVLSIKKKSVLPSQQKRLVDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASD 410

Query: 447  FLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS--FSQ--KTRVFKRVRSILSGGFYLC 502
            F+R+TF++E    +  N +S         ITL    FS+  +T ++KRV +IL  G  + 
Sbjct: 411  FMRITFVEEDWSKLPNNAIS---------ITLKKGMFSRPLRTEIYKRVLNILRDGILIG 461

Query: 503  GRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSST 561
             ++F FLAFS+SQLR  S W F+ + K    DI++WMG F + ++++KCAARMGQ FSS+
Sbjct: 462  SKRFEFLAFSASQLRSNSVWLFASNDKVKAADIREWMGSFNNIRSVSKCAARMGQLFSSS 521

Query: 562  YATVEVPPTEVDPELPDIKRNG----YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQ 617
              T E+ P +VD  +PDI+       Y FSDGIGKI+   A ++A+KLKLD N  P A+Q
Sbjct: 522  RQTFEMAPQDVDL-IPDIEITSDGIDYCFSDGIGKISQSFARQLAEKLKLDENRIPSAFQ 580

Query: 618  IRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLS 677
            IRY G KGV+A    +    ++SLR+SM KF+S +  L +  W+   P FLNR+II+LLS
Sbjct: 581  IRYGGYKGVIAV--DRHSFKKLSLRKSMLKFESKNRMLCVTKWSESMPCFLNREIISLLS 638

Query: 678  TLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI-MLSAGFNPQTEP 736
            TL + DE   ++Q+  L  L +ML D + A +VL +      N+  + ML   + P +EP
Sbjct: 639  TLGIKDEALLALQEDQLQLLGKMLTDKEAALDVLESLNGADSNSILVKMLHRFYEPNSEP 698

Query: 737  HLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFS 796
            +L  ML      QL  L+ + RIFVP GR L+GCLDE G+L  GQ F++++       F 
Sbjct: 699  YLSMMLKAHYTYQLSDLKSRCRIFVPKGRVLIGCLDETGLLNYGQVFVRITVAKTKEKFG 758

Query: 797  KHGSRFAE-TKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHH--LYDCLVFPQKGD 853
                R  +     ++I G VV+ KNPCLHPGDIR+L+AV   EL    L DCLVFPQKG 
Sbjct: 759  DENLRNVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAVYSEELEEKGLRDCLVFPQKGH 818

Query: 854  RPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFA 913
            RPH NE SG DLDGDL+F++WD++LIP   ++  PM+Y     + +   V   +I +FF 
Sbjct: 819  RPHPNECSGGDLDGDLFFISWDKDLIPAQTEN--PMDYTGRRPRIMDHKVTLEEIHQFFV 876

Query: 914  KHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPK 973
             +M+N+ LG I  AH+VHAD     A    C+ LAEL + AVDF KTG    MP  LKP+
Sbjct: 877  DYMINDTLGAISTAHLVHADREHDKAKSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPR 936

Query: 974  LYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDE---DISVSSEVDINPVDIHYDTDLEVP 1030
             +PDFM +     Y S  +LG+LYR + D+  +   D+ +S +         YD  LEV 
Sbjct: 937  EFPDFMERFEKPMYISKGVLGKLYRATIDSNLQVRFDMVMSEKFAKEA----YDHQLEVD 992

Query: 1031 ESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKY---NSRKQGELKER 1087
                F+  A + +  Y  ++  L+  Y    E+E++TG++ +   Y   ++R+ G++K+R
Sbjct: 993  GFEVFLETALSHRDMYAQKMISLMSFYGATTEDEMLTGNLQNRASYLQRDNRRYGDMKDR 1052

Query: 1088 LKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQE 1147
            +  S   L+ E ++ FE   SDC+          ++  ASAWY VTYHP++         
Sbjct: 1053 ILISVKDLQLEAKEWFE---SDCQPHE-------YQLMASAWYHVTYHPKYY-------- 1094

Query: 1148 QDSARSVVLLSFAWIANDYLARIK 1171
                 S   LSF WI  D L  IK
Sbjct: 1095 ---IESSTFLSFPWIVGDILLHIK 1115



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 55/91 (60%)

Query: 908  IIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMP 967
            I +FF  +M+ + LG I  AH+VHAD     A    C+ LAEL + AVDF KTG +  MP
Sbjct: 1120 IHKFFVDYMIKDTLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDFAKTGALAEMP 1179

Query: 968  AHLKPKLYPDFMGKEAYQSYKSNKILGRLYR 998
              LKPK +PDFM +     Y S  +LG+LYR
Sbjct: 1180 RVLKPKEFPDFMERFEKPMYVSKGVLGKLYR 1210


>gi|125548642|gb|EAY94464.1| hypothetical protein OsI_16234 [Oryza sativa Indica Group]
          Length = 1136

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 363/1008 (36%), Positives = 543/1008 (53%), Gaps = 90/1008 (8%)

Query: 217  AILLQLASSPRVWYRTADDDILVLVPFDML-----DDDDPWIRTTDFTPSGAIGRCNSYR 271
            AILLQL  +PR+    +   +      D       D    W+R  DFTP+ + GRC++  
Sbjct: 177  AILLQLNYAPRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLV 236

Query: 272  ISIS-SRHRGKLSKVITY---LGERRVQ----VDSLSRPITIREEP-DFEVPMSDPFFCI 322
            + +  S     + K + +   LGE  +     V + S  + +   P D+ VP        
Sbjct: 237  LKLGKSALVSDILKSLPFSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVP-------- 288

Query: 323  HYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFD 382
                   +E++F +N++MH G I    ++   F  L+    +V+    + ++  +   ++
Sbjct: 289  -------YEVLFRLNSLMHMGKIVAKHVNADLFKALQELPVDVSRRIFEKMHKLESTCYE 341

Query: 383  ACK-------RLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNR 435
              +        +K     LL +    +G +++   ++  R+ ITP+K +CL PE E++N 
Sbjct: 342  PLQFIQQEAYSMKRSHNVLLSNEGEGEGERKL---MKCYRVNITPSKIFCLGPEEEVTNY 398

Query: 436  VLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSIL 495
            V++ +   A  F+RVTF+DE    +++N +S   A I +      F  KT ++ R+ SIL
Sbjct: 399  VVKHHSAYASDFVRVTFVDEDWSKLSSNAIS---ARIEQGFFSKPF--KTGLYYRILSIL 453

Query: 496  SGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARM 554
              GF +  + F FLAFS+SQLR  S W F+ +   +   I++WMG F + ++++KCAARM
Sbjct: 454  KKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASLNAGGIRRWMGHFENIRSVSKCAARM 513

Query: 555  GQCFSSTYATVEVPPTEVDPELPDIK----RNGYVFSDGIGKITPDLAMEVAQKLKLDVN 610
            GQ FSS+  T EV   +V+  +PDI+     + Y+FSDGIGKI+   A  VA  + LD  
Sbjct: 514  GQLFSSSRQTFEVLRWDVEV-IPDIEITTDGSKYIFSDGIGKISLRFAKRVAHHVGLDPT 572

Query: 611  PPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNR 670
              P A+QIRY G KGV+A  P     I +SLR SM KF+S    L I SW++ QP ++NR
Sbjct: 573  NLPSAFQIRYGGYKGVIAIDPMSS--IDLSLRPSMKKFESESRMLNITSWSKSQPCYVNR 630

Query: 671  QIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGF 730
            +II+LLSTL + DE+F +MQ   + +  +ML + +VA  VL      +  TA  ML  G+
Sbjct: 631  EIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSVLGKLGGSETKTAVKMLLQGY 690

Query: 731  NPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPF 790
             P +EP+L  +L   +  +L  +R + +I VP GR L+GCLDE GVLE GQ +I++++  
Sbjct: 691  EPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGCLDETGVLEYGQVYIRITKNS 750

Query: 791  LGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQ 850
                 S     + +  K   + G V I KNPCLHPGDIR+LEA+  P+L  + DCLVFPQ
Sbjct: 751  KEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQ 810

Query: 851  KGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIE 910
            +G+RPH NE SG DLDGDLYF+TWD+ LIP  +K   PM+Y A   + +   V   +I +
Sbjct: 811  RGERPHPNECSGGDLDGDLYFITWDDKLIP--EKVDTPMDYTATRPRIMDHVVTLEEIQK 868

Query: 911  FFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHL 970
             F  +M+N++LG I  AH++HAD S   A    C+ LA L + AVDF KTG    MP  L
Sbjct: 869  HFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTL 928

Query: 971  KPKLYPDFMGKEAYQSYKSNKILGRLYRQS----KDAYDEDISVSSEVDINPVDIHYDTD 1026
            +P+ YPDFM +     Y SN +LG+LYR +    + + D     SS    +P    YD D
Sbjct: 929  RPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPT---YDPD 985

Query: 1027 LEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKY---NSRKQGE 1083
            LEVP S +F+  A      Y+ +L  L+  Y+   E+E++TG+I +   Y   ++++  E
Sbjct: 986  LEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAEHEDEILTGNIRNKMLYLKRDNKRYFE 1045

Query: 1084 LKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSL 1143
            +K+R+  +  AL +E R           L S  E++A   R ASAWY+VTYHP       
Sbjct: 1046 MKDRIVAAVDALHREARGWL--------LSSRKEEDA--SRMASAWYRVTYHP------- 1088

Query: 1144 DLQEQDSARSVVLLSFAWIANDYLARIK----IRCREMANIDTSKPVN 1187
                 D  R     SF WIA D L  IK    +R R   + D++  V 
Sbjct: 1089 -----DRRRGKRFWSFPWIACDNLLAIKASSQLRRRRQKDDDSTAVVQ 1131


>gi|315307484|gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
          Length = 1147

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 383/1144 (33%), Positives = 587/1144 (51%), Gaps = 141/1144 (12%)

Query: 81   VHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPEN----PFRLNQR---GRTSTPFKLP 133
            V FA P   + A+  +    L     +LK+S   ++    P R + R   G     F   
Sbjct: 58   VQFAAPQAKSDALRLSRHDHLLFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSS 117

Query: 134  DVCVEI--------GTLV---SRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFAL 182
            D C+ +        G ++    R EF+V   G     DFL D    T   CF        
Sbjct: 118  DDCLRVLERWEGVRGWIMPERRRLEFWVWTDGECYKLDFLFDDIFETVGCCFDGS----- 172

Query: 183  KSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDI----- 237
                                           +C A+LL++  +PR++ + +  ++     
Sbjct: 173  -------------------------------ACNALLLRVRYAPRIYQKVSGPNVASKFS 201

Query: 238  -----LVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGER 292
                 +    FD L     W+RTTDF+   +IG+  S+    ++     +S + TYL   
Sbjct: 202  TDRYHICKEKFDFL-----WVRTTDFSRIKSIGQSTSFYWEFNAGF--SISDMSTYLPCY 254

Query: 293  RVQVDSLSRPITIREEPDFEVPMSD-PFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLS 351
            R  + S S    +    +F  P    P      +  +++EI+F +NA++H   I+   + 
Sbjct: 255  REDIQSPS----LEARREFSSPSEIVPLVKFPSDSKLAYEILFQLNALVHTQKISIAAVD 310

Query: 352  DSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQID--- 408
                 +L G   E  V  L+ +   + P ++    +K      L   + Y+ P  +    
Sbjct: 311  TDLIGILSGLPVETAVMILQKLRLLQSPCYNPVSFVKAK----LPTGKNYRIPLSVSERL 366

Query: 409  ---DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVL 465
               +++  RR +ITPTK YCL PE+E +N V++ + + A  F+RVTF++E    ++AN +
Sbjct: 367  KNHNVMSCRRALITPTKIYCLGPELETANYVVKNFVEYASDFMRVTFVEEDWSKLSANAI 426

Query: 466  SYFIAPIVRDITLNSFSQ--KTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF 523
            S         + L  FS+  KT+++ R+  +L  G  +  ++F FLAFS+SQLR  S W 
Sbjct: 427  S-------TGVHLGVFSRPFKTKIYDRILYVLQNGIVIGDKRFEFLAFSASQLRSNSVWM 479

Query: 524  FSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDP-ELPDIKR 581
            F+ + +    DI++WMG F   ++I+KCA+RMGQ FSS+  T+ VP  +V+  +  ++K 
Sbjct: 480  FASNDEVKAEDIREWMGCFKKIRSISKCASRMGQLFSSSMPTLVVPVQDVEIIDDIEVKT 539

Query: 582  NG--YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRM 639
            +G  Y FSDGIGKI+   A +VA+K  L  N  P A+QIRY G KGVVA    +    +M
Sbjct: 540  DGINYCFSDGIGKISLPFARQVAEKCGL--NHIPSAFQIRYGGYKGVVAV--DRNSFWKM 595

Query: 640  SLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQ 699
            SLR+SM KF+S    L +  W+   P FLNR+I+TL STL + DE+F  MQ+  L  L +
Sbjct: 596  SLRDSMLKFESKVRMLNVTKWSESMPCFLNREIVTLFSTLGIKDEVFERMQEEQLCLLGK 655

Query: 700  MLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARI 759
            ML + + A + L +          + +   + P  +P+L  ML       L  L+ + RI
Sbjct: 656  MLTNREAALDTLQSLGGVNSKNILVEMLQFYEPNVQPYLSMMLQAHYENLLSDLKSRCRI 715

Query: 760  FVPAGRWLMGCLDELGVLEGGQCF--IQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVI 817
            FVP GR L+GCLDE G L  GQ +  I++ +  L  C  +   R  + +   VI G VV+
Sbjct: 716  FVPKGRILIGCLDETGTLNYGQVYLCIKMKKAEL-ECADQSYFRKVDEETAIVI-GKVVV 773

Query: 818  AKNPCLHPGDIRILEAVDHPELHH--LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 875
             KNPCLHPGD+R+LEAV  P+L    L DCLVFPQKG+RPH NE SG DLDGD +F++WD
Sbjct: 774  TKNPCLHPGDVRVLEAVYEPQLEEKGLVDCLVFPQKGERPHPNECSGGDLDGDQFFISWD 833

Query: 876  ENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHS 935
            ++LIP   ++ PPM+Y     + +   V   +I +FF  +M+N+ LG I  AH+VHAD  
Sbjct: 834  KDLIPC--QTEPPMDYTGRRPRIMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADRE 891

Query: 936  EYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGR 995
               A  ENC+ LA L + AVDF KTG    MP  LKP+ +PDFM +     Y S+ +LG+
Sbjct: 892  PDKACSENCLALATLHSMAVDFAKTGAPAEMPRALKPREFPDFMQRGNKPMYTSSGVLGK 951

Query: 996  LYRQSKDAYDEDISV---SSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNG 1052
            LYR + ++  +  S    + E+     ++ YD DLEV      I+ A   K  Y+ +++ 
Sbjct: 952  LYRATINSTVQTRSKFVWTKEM----AELVYDHDLEVNGFESLISVAETHKEMYEERMSL 1007

Query: 1053 LLEQYKVNREEELVTGHIWSMPKY---NSRKQGELKERLKHSYSALRKEFRQVFEKMDSD 1109
            L+  Y V  E+E++TG+I++  ++   ++R+ GE+KER+  S   L++E ++ F+   S 
Sbjct: 1008 LMSYYDVEYEDEILTGNIYNKAQFLLRDNRRYGEMKERIVLSVKDLQREAKEWFK---SS 1064

Query: 1110 CELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLAR 1169
            C    E +K       ASAWY VTYHP + ++ ++            LSF WI  D L R
Sbjct: 1065 CSKADEHQK------LASAWYYVTYHPNYFQERMN-----------SLSFPWIVGDILLR 1107

Query: 1170 IKIR 1173
            +K R
Sbjct: 1108 VKSR 1111


>gi|377347180|dbj|BAL63010.1| RNA-dependent RNA polymerase 1 [Cucumis sativus]
          Length = 1115

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 386/1066 (36%), Positives = 561/1066 (52%), Gaps = 82/1066 (7%)

Query: 137  VEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFK 196
            + +G  +S++ F V W       DF  D           R + F +       ++   ++
Sbjct: 102  LHLGCQISKESFSVLWTESNVSVDFGFD----------VRKLYFFISYPRVDYMLVLRYE 151

Query: 197  VEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLV-PFDMLDD--DDPWI 253
                + ++ L K + + S   +L+QL  +PR++ R A    L+   PF       D  W 
Sbjct: 152  N---IWQVELHKPHGQ-SVDYLLIQLFGAPRIYERDARSFGLITEDPFLNFSTEIDTQWF 207

Query: 254  RTTDFTPSGAIGRCNSYRISI-SSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFE 312
            R TDFTPS +IG+  +  + I   R          Y  E + +  +L    T     +  
Sbjct: 208  RATDFTPSCSIGQSAALCLEILYGRQLPNFHDKFAYFKEIKGKF-TLVSGSTYSSNVNL- 265

Query: 313  VPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVA--AL 370
            VP+  P   I+    + + I+F +N ++ +G +    L  SF+ ++  Q     V   AL
Sbjct: 266  VPVVTPPRTIN----LPYTILFKINLLVQQGCLPGPALDISFYQMVDSQIYNTAVIDHAL 321

Query: 371  KHIYSYKWPVFDACKRL--KLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPP 428
            K +   K   ++  K L  +  + + LK+P         + +V V R+ +TP K Y   P
Sbjct: 322  KKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLNEGLVYVHRVQVTPCKVYFCGP 381

Query: 429  EVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVF 488
            EV +SNRVLR+Y D  D FLRV+F+DE L  M +  LS   +  + D        KT++ 
Sbjct: 382  EVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSPRASSSLED-------GKTKIL 434

Query: 489  KRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNI 547
            KR+ S+L  G  +  +KF FLA+SSSQLR+ +AW F+   + +   I++WMG F + +N+
Sbjct: 435  KRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAKIRQWMGDFHNIRNV 494

Query: 548  AKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRN-----GYVFSDGIGKITPDLAMEVA 602
            AK AAR+GQ F S+  T+ V   EV   +PDI+        YVFSDGIGKI    A +VA
Sbjct: 495  AKYAARLGQPFGSSTETLSVSRREVK-VIPDIEVESGSGVNYVFSDGIGKIAASFARKVA 553

Query: 603  QKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTR 662
            +K    +   P A+QIRYAG KGV++  P     +++SLR SM K++S  T L++ SW++
Sbjct: 554  KKC--GIRHTPSAFQIRYAGFKGVISVDPT--SSVKLSLRNSMLKYESTDTKLDVLSWSK 609

Query: 663  FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVD---SDVAFEVLTAACAEQG 719
            + P FLNRQ+ITLLSTL V D +F S Q  ++ +L+ +  D   +  A E+++    E  
Sbjct: 610  YHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALELMSPG--ENT 667

Query: 720  NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG 779
                 M+  G+ P +EP LR ML   R ++L  LR K+RIF+P GR +MGCLDE   LE 
Sbjct: 668  KILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLDETRNLEY 727

Query: 780  GQCFIQVSEPFLGNCFSKHGSRFA----ETKKLQVIKGFVVIAKNPCLHPGDIRILEAVD 835
            G+ F Q S          H  R      ++ +  ++ G VV+AKNPCLHPGD+R+L AVD
Sbjct: 728  GEVFWQCSAHQ-----QLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTAVD 782

Query: 836  HPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAE 895
             P LHH+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD +LIPP +    PM+Y    
Sbjct: 783  VPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVE--PMDYTPVP 840

Query: 896  AKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAV 955
            ++ L   V   ++ E+FA +MVN++LG I NAH   AD     A+   CI LA+L + AV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 956  DFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVD 1015
            DFPKTG    +PA+L+ K YPDFM K    +Y+S  +LG+L+R   D+   +I      +
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRML-DSIGPNIKNIRSFN 959

Query: 1016 INP--VDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSM 1073
              P      YD D+EV    +++ DA   K +YD +L  L+  +K+  E EL++G   + 
Sbjct: 960  YTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTS 1019

Query: 1074 PKYNSRKQGELKERLKHSYSALRKEFRQVF-EKMDSDCELLSEDEKNALFERKASAWYQV 1132
                + K     E +  +  +LRKE R  F EK D     L       ++ R ASAWY V
Sbjct: 1020 SLSFTMKNE--AESIILAVKSLRKEARGWFNEKAD-----LHYGHHTNVYAR-ASAWYFV 1071

Query: 1133 TYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARI---KIRCR 1175
            TYH  +   S   +          LSF W   D L RI   KI CR
Sbjct: 1072 TYHHTYWGWSDGRKNHGH-----FLSFPWCVYDKLIRIKHRKINCR 1112


>gi|307135834|gb|ADN33705.1| RNA-dependent RNA polymerase [Cucumis melo subsp. melo]
          Length = 1137

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 400/1100 (36%), Positives = 577/1100 (52%), Gaps = 112/1100 (10%)

Query: 131  KLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAV 190
            ++ DV  ++G+++S+D+  V W G     +F     +G  K  F   +++ +        
Sbjct: 99   RMEDVKGQLGSMISKDKMRVIWEGEKWNVEF----GNGVRKLWFY--LSYEVDDYKMELC 152

Query: 191  IKCEFKVEFLVREINLVKQYSEFSCVAILLQLAS-----------------SPRVWYRTA 233
             +    VEF       + Q S+F  + +     S                 +PR++ +T 
Sbjct: 153  FENILSVEFRCP----LNQPSKFFLIQVSSFFLSFFSFFLSFLSLLKLQCRAPRIFRKTP 208

Query: 234  DDDILVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERR 293
                  L  +    +   WIR  DFTPS  IG+  +  +  S  H   L      L   +
Sbjct: 209  SSSSSPL--YSNESNSFRWIRDVDFTPSSCIGQSFTLCLQFSPSHH--LPPFFQTLVGYK 264

Query: 294  VQVDSLSRPITIREEPDFEVPMSD--PFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLS 351
            V  D    P  +R+   F V  S+  P         IS++I+F +NA++ +G ++   L 
Sbjct: 265  VTYD----PFILRKGSSF-VSNSNLVPIITPPQAFDISYKILFKINALLQRGYLSGPTLD 319

Query: 352  DSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQI---- 407
            D FF L+   S   +   ++H     + + + C +    Q+WL      Y    Q+    
Sbjct: 320  DEFFRLV--DSSRFHPDYIEHALEKLFNLKECCYK---PQKWLKDQYLSYYVSNQLPWKP 374

Query: 408  -----DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNA 462
                 D +V V R+ ITP K Y   PE  LSNRV+R++ D  D FLRV+F+DE L  ++ 
Sbjct: 375  NVSLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKLH- 433

Query: 463  NVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAW 522
               S  +AP       N+   +TRV+ RV S+L  G  +  +KF FLAFS+SQLR+ S W
Sbjct: 434  ---SIDLAPRSSSPENNT---RTRVYDRVVSVLKNGIVIGDKKFEFLAFSASQLRENSFW 487

Query: 523  FFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDI-- 579
             F+     S  DI++WMG F   +N+AK AAR+GQ F S+  T+ V   E++  +PD+  
Sbjct: 488  MFASRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVKEHEIEV-IPDVEV 546

Query: 580  --KRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGI 637
              K   Y FSDGIGKI+  LA +VA+K  L     P A+QIRYAG KGVVA  P      
Sbjct: 547  ERKNIMYCFSDGIGKISKTLAKKVAKKCGL-TGHTPSAFQIRYAGYKGVVAIDPTSEK-- 603

Query: 638  RMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKL 697
            ++SLR+SM K+ S  T L++  W+++QP FLNRQ+I LLSTL + D++F   Q   + +L
Sbjct: 604  KLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQL 663

Query: 698  NQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKA 757
            + +L D   A EVL      +  +    L + + P  EP L  ML   RA +L  L+ K+
Sbjct: 664  DSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRANKLLDLKTKS 723

Query: 758  RIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVI 817
            RIFVP GR +MGCLDE   LE GQ F+  S P           R +E   +   K  VV+
Sbjct: 724  RIFVPRGRTMMGCLDETRTLEYGQVFVHCSVP----------GRSSEGNFVVKGK--VVV 771

Query: 818  AKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEN 877
            AKNPCLHPGD+R+L+A+D   LHH+ DC+VFPQKG RPH NE SGSDLDGDLYFV WD  
Sbjct: 772  AKNPCLHPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSE 831

Query: 878  LIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEY 937
            L     K   PM Y  A +  L   V   ++ ++FA +MVN+ LG I NAH V AD +  
Sbjct: 832  LT--CIKQVKPMSYEPAPSIQLDHDVTIEEVQKYFANYMVNDGLGAIANAHTVFADKNSK 889

Query: 938  GALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLY 997
             A+   CI LA+L + AVDFPKTG    +P +L+   YPDFM K    +Y SN +LG+L+
Sbjct: 890  KAMSAECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPDKPTYVSNGVLGKLF 949

Query: 998  RQSKDAYDEDISVSSEVDINPVDIH--------YDTDLEVPESVDFIADAWNQKCSYDGQ 1049
            R  KD       VSS  D+N  +I         YD D+EV     ++ +A++ K  YD +
Sbjct: 950  RGVKD-------VSS--DVNTFEIFTKEVATKCYDPDMEVDGFEKYLREAFDYKTKYDFK 1000

Query: 1050 LNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSD 1109
            L  L++ Y +  E ELV+G+I  M K +  K+ +L E++  +  +LRKE R  F + +S 
Sbjct: 1001 LGNLMDYYGIKTEPELVSGNILKMAK-SFDKRNDL-EQIAFAMKSLRKEVRSWFNENES- 1057

Query: 1110 CELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLAR 1169
             +   ED ++  + R ASAWY VTYHP++  +  +  ++D       LSF W   D L +
Sbjct: 1058 -KYTYEDIEDDEYAR-ASAWYCVTYHPDYWGRYNEGTQRDH-----FLSFPWCVADKLIQ 1110

Query: 1170 IKIRCREMANIDTSKPVNYL 1189
            IK   RE  ++  S P++ L
Sbjct: 1111 IK---REKMSLRNSSPMSSL 1127


>gi|75327281|sp|Q7XM31.1|RDR2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 2; Short=OsRDR2
 gi|32492169|emb|CAE04828.1| OSJNBb0048E02.13 [Oryza sativa Japonica Group]
          Length = 1136

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 373/1017 (36%), Positives = 551/1017 (54%), Gaps = 108/1017 (10%)

Query: 217  AILLQLASSPRVWYRTADDDILVLVPFDMLDD------DDP---WIRTTDFTPSGAIGRC 267
            AILLQL  +PR+   TA     V   F  +DD      +D    W+R  DFTP+ + GRC
Sbjct: 177  AILLQLNYAPRI--HTAISGPAVNSRF--MDDRFHACKEDAKFSWVRALDFTPNYSFGRC 232

Query: 268  NSYRISIS-SRHRGKLSKVITY---LGERRVQ----VDSLSRPITIREEP-DFEVPMSDP 318
            ++  + +  S     + K + +   LGE  +     V + S  + +   P D+ VP    
Sbjct: 233  STLVLKLGKSALVSDILKSLPFSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVP---- 288

Query: 319  FFCIHYEEGISFEIMFLVNAVMHKG-IINQHQLSDSFFDLLRGQSREVNVAALKHIYSYK 377
                       +E++F +N++MH G I+ +H  +D F  L     +E+ V   + I+   
Sbjct: 289  -----------YEVLFRLNSLMHMGKIVAKHVNADLFKAL-----QELPVDVSRRIFEKM 332

Query: 378  WPVFDAC-KRLKLVQE----------WLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCL 426
              +   C   L+ +Q+           LL +    +G +++   ++  R+ ITP+K +C 
Sbjct: 333  HKLESTCYGPLQFIQQEAYSMKRSHNVLLSNEGEGEGERKL---MKCYRVNITPSKIFCF 389

Query: 427  PPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTR 486
             PE E++N V++ +   A  F+RVTF+DE    +++N +S   A I +      F  KT 
Sbjct: 390  GPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAIS---ARIEQGFFSKPF--KTG 444

Query: 487  VFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-K 545
            ++ R+ SIL  GF +  + F FLAFS+SQLR  S W F+ +   +   I++WMG F + +
Sbjct: 445  LYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASLNAGGIRRWMGHFENIR 504

Query: 546  NIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK----RNGYVFSDGIGKITPDLAMEV 601
            +++KCAARMGQ FSS+  T EV   +V+  +PDI+     + Y+FSDGIGKI+   A  V
Sbjct: 505  SVSKCAARMGQLFSSSRQTFEVLRWDVEV-IPDIEITTDGSKYIFSDGIGKISLRFAKRV 563

Query: 602  AQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWT 661
            A  + LD    P A+QIRY G KGV+A  P     I +SLR SM KF+S    L I SW+
Sbjct: 564  AHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSS--IDLSLRPSMKKFESESRMLNITSWS 621

Query: 662  RFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNT 721
            + QP ++NR+II+LLSTL + DE+F +MQ   + +  +ML + +VA  VL      +  T
Sbjct: 622  KSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSVLGKLGGSETKT 681

Query: 722  AAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQ 781
            A  ML  G+ P +EP+L  +L   +  +L  +R + +I VP GR L+GCLDE GVLE GQ
Sbjct: 682  AVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGCLDETGVLEYGQ 741

Query: 782  CFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHH 841
             +I++++       S     + +  K   + G V I KNPCLHPGDIR+LEA+  P+L  
Sbjct: 742  VYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDLVG 801

Query: 842  LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR 901
            + DCLVFPQ+G+RPH NE SG DLDGDLYF+TWD+ LIP  +K   PM+Y A   + +  
Sbjct: 802  MVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIP--EKVDTPMDYTATRPRIMDH 859

Query: 902  PVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
             V   +I + F  +M+N++LG I  AH++HAD S   A    C+ LA L + AVDF KTG
Sbjct: 860  VVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTG 919

Query: 962  KIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQS----KDAYDEDISVSSEVDIN 1017
                MP  L+P+ YPDFM +     Y SN +LG+LYR +    + + D     SS    +
Sbjct: 920  APAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPS 979

Query: 1018 PVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKY- 1076
            P    YD DLEVP S +F+  A      Y+ +L  L+  Y+   E+E++TG+I +   Y 
Sbjct: 980  PT---YDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYL 1036

Query: 1077 --NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTY 1134
              ++++  E+K+R+  +  AL +E R           L S  E++A   R ASAWY+VTY
Sbjct: 1037 KRDNKRYFEMKDRIVAAVDALHREARGWL--------LSSRKEEDA--SRMASAWYRVTY 1086

Query: 1135 HPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK----IRCREMANIDTSKPVN 1187
            HP            D  R     SF WIA D L  IK    +R R   + D++  V 
Sbjct: 1087 HP------------DRRRGKRFWSFPWIACDNLLAIKASSQLRRRRQKDDDSTAVVQ 1131


>gi|356519367|ref|XP_003528344.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
          Length = 1135

 Score =  560 bits (1442), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 392/1188 (32%), Positives = 592/1188 (49%), Gaps = 126/1188 (10%)

Query: 15   VSFGGFDRNVKAAELVKYLENEVGG-------VWRCRLKTSCTPSESYPDFYVTNTAEVR 67
            +   GF  NV A E+ K+LE   G        VW+ +   +      + D     T  + 
Sbjct: 5    IQMHGFQSNVSAEEVKKFLEKHTGHQTVHAVEVWQHKGDPTTHVDVQFTDRKSVETILLL 64

Query: 68   KTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGRTS 127
             T            H +   YV  A +     ++F   R                     
Sbjct: 65   VTQ-----------HLSYSDYVLNATEI--NHDIFPKPRNF------------------- 92

Query: 128  TPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTE 187
             P ++ D+ V  G   S+D+  V W  P     F          F +   + + L+ S+E
Sbjct: 93   -PHRMDDIVVHFGCQTSKDKLSVLWEHPNVSVKFGSRLRKMYIFFNYL-TMDYKLQISSE 150

Query: 188  HAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLD 247
             ++ + E +        +L K++       +L QL  +P ++ +           +    
Sbjct: 151  -SISRIELR-----HSDDLTKKF-------LLFQLRGAPMIYEKDVSKS-----KYFKEA 192

Query: 248  DDDPWIRTTDFTPSGAIGRCNSYRISI-SSRHRGKLSKVITYLGERRVQVDSLSRPITIR 306
             D+ W R  DFTPS +IG+ ++    +  S    K ++      E    + +L + +   
Sbjct: 193  CDNHWFRGVDFTPSSSIGQSSTLCFELPQSIEVPKFNQHYRNYSEVDDSIFTLEKHLGFS 252

Query: 307  EEPDFEVPMSDPFFCIHYEEGIS--FEIMFLVNAVMHKGIINQHQLSDSFFDLL--RGQS 362
                F VP+  P       EG +  ++I+F +N+++  G +    +  + F L+  R   
Sbjct: 253  SNFKF-VPIVIP------PEGFNLPYKILFKINSLIQHGCLPVLAIDINLFHLVDPRRVR 305

Query: 363  REVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQI---------DDIVEV 413
             E   +AL  +   K   ++         +WL K    Y     +         D +V V
Sbjct: 306  LEYIESALHKLDQMKECCYEPA-------QWLEKQYNKYSTNSLVPLSSAISLDDGLVYV 358

Query: 414  RRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIV 473
             R+ +TP+K Y   PEV LSNRVLR Y +  D FLRV+F+DE +  +++       A +V
Sbjct: 359  HRVQVTPSKIYFCGPEVNLSNRVLRNYPEDTDNFLRVSFVDEDMDKLHS-------ADLV 411

Query: 474  RDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVL 533
               +     ++T++ +RV S L  G  +  +KF FLAFS SQLRD S W F+     +  
Sbjct: 412  PRSSSTDVDRETKLHERVLSTLKNGIAIGDKKFEFLAFSPSQLRDNSVWMFASRTGLTAS 471

Query: 534  DIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK-RNG---YVFSD 588
            DI+KWMG F + +N+AK AAR+GQ FSS+  TV V   E++  +PDI+ R G   Y F+D
Sbjct: 472  DIRKWMGEFHEIRNVAKYAARLGQSFSSSRETVSVGEHEIEI-IPDIELRRGETKYCFTD 530

Query: 589  GIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKF 648
            GIGKI+ +LA EVA+K     N  P A+QIRY G KGVVA  P      ++SLR+SM K+
Sbjct: 531  GIGKISSELAQEVAKKCGCRDNNIPSAFQIRYGGYKGVVAIDPT--SSTKLSLRKSMFKY 588

Query: 649  QSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAF 708
            +S +T L++ +W++++P +LNRQIITLLSTL V D +F   Q  +L++L  +     +  
Sbjct: 589  KSENTKLDVLAWSKYKPCYLNRQIITLLSTLGVKDRVFRKKQREILNQLKMISTKPLMVL 648

Query: 709  EVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLM 768
            +++     E  N    ML  GF+   EP L  ML  + A++L  L+ K RI V  GR L+
Sbjct: 649  DLMFTG--EITNILREMLICGFHQTKEPFLSMMLQTLCASKLQELQLKTRILVKKGRALL 706

Query: 769  GCLDELGVLEGGQCFIQVSEPFLGNCF---SKHGSRFAETKKLQVIKGFVVIAKNPCLHP 825
            GCLDE   L+ G+ F+Q++           S   +R+   K   ++KG VV+AKNPCLHP
Sbjct: 707  GCLDETRTLKYGEVFVQIAHQRNKQIHAMPSLSSNRYGGNKSKHIVKGKVVVAKNPCLHP 766

Query: 826  GDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS 885
            GD+RIL AVD P LHH+ DC+VFPQKG RPH NE SGSDLDGD+YFV+WD +LIPP +++
Sbjct: 767  GDVRILRAVDVPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPPHQEN 826

Query: 886  WPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCI 945
              PM++  ++   +   V  +++ E+FA ++V + LG + +AH V AD     A+   C 
Sbjct: 827  --PMDHAPSQVMNVDHDVTLQEVQEYFAHYIVEDRLGIVASAHTVFADKDPEKAMSPACT 884

Query: 946  LLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYD 1005
             LA+L + AVDF K+G    +P HL+ + YPDFM K    SY+SN I+G+LYR+ ++   
Sbjct: 885  ELAKLHSIAVDFAKSGVPAEIPQHLRVEEYPDFMEKPDKPSYQSNSIIGKLYREVRNVAQ 944

Query: 1006 EDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEEL 1065
               +++           YD D+E+     + A A   K  YD +L  L++ Y +  E E+
Sbjct: 945  HK-NLNKTFTRRVARQSYDPDMEIDGFEKYTATACEYKNMYDFKLGNLMDYYGIETEAEI 1003

Query: 1066 VTGHIWSMPK-YNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFER 1124
            ++G+I  M K +N RK     E + H+  +LRKE R  F  M +       D        
Sbjct: 1004 ISGNILKMSKSFNERKD---LEGINHAVMSLRKETRSWFNVMVNKSNSQGRDAYAI---- 1056

Query: 1125 KASAWYQVTYHPE-WVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
             ASAWY VTYHP  W   +  L           LSF W  +D L +IK
Sbjct: 1057 -ASAWYLVTYHPRYWGSYNQGLNRGH------FLSFPWCVHDTLIQIK 1097


>gi|315307478|gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
          Length = 1147

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 383/1145 (33%), Positives = 581/1145 (50%), Gaps = 143/1145 (12%)

Query: 81   VHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPEN----PFRLNQR---GRTSTPFKLP 133
            V FA P  ++ A+  +    L     +LK+S   ++    P R + R   G     F   
Sbjct: 58   VQFAAPQAMSDALRLSRHDHLLFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSS 117

Query: 134  DVCVEI--------GTLV---SRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFAL 182
            D C+ +        G ++    R EF+V   G     DFL D    T   CF        
Sbjct: 118  DDCLRVLERWEGVRGWIMPERRRLEFWVWTDGECYKLDFLFDDLFETVGCCFDGS----- 172

Query: 183  KSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDI----- 237
                                           +C A+LL++  +PR + + +  ++     
Sbjct: 173  -------------------------------ACNALLLRVRYAPRTYRKVSGPNVASKFS 201

Query: 238  -----LVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGER 292
                 +    FD L     W+RTTDF+   +IG+  S+    ++     +S + TYL   
Sbjct: 202  TDRYHICKEKFDFL-----WVRTTDFSRIKSIGQSTSFYWEFNAGF--SISDMSTYLPCY 254

Query: 293  RVQVDSLSRPITIREEPDFEVPMSD-PFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLS 351
            R  + S S    +    +F  P    P      +  +++EI+F +NA++H   I+   + 
Sbjct: 255  REDIQSPS----LEARGEFSSPSEIVPLVKFPSDSKLAYEILFQLNALVHTQKISIAAVD 310

Query: 352  DSFFDLLRGQSREVNVAALKHIYSYKWPVFDACK--RLKLVQEWLLKDPELYKGPKQIDD 409
                 +L     E  V  L+ +   + P ++     + KL      + P       +  +
Sbjct: 311  TDLIGILSVLPVETAVMILQKLRLLQSPCYNPVSFVKAKLPTGKNFRIPLSVSERLKNHN 370

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
            ++   R +ITPTK YCL PE+E +N V++ + + A  F+RVTF++E    ++AN +S   
Sbjct: 371  VMSCHRALITPTKIYCLGPELETANYVVKNFAEYASDFMRVTFVEEDWSKLSANAIS--- 427

Query: 470  APIVRDITLNSFSQ--KTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSED 527
                  + L  FS+  KT+++ R+ SIL  G  +  ++F FLAFS+SQLR  S W F+ +
Sbjct: 428  ----TGVHLGVFSRPFKTKIYDRILSILQNGIVIGDKRFKFLAFSASQLRSNSVWMFASN 483

Query: 528  GKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDP-ELPDIKRNG-- 583
             +    DI++WMG F   ++I+KCA+RMGQ FSS+  T+ VP  +V+  +  ++K +G  
Sbjct: 484  DEVKAEDIREWMGCFKKIRSISKCASRMGQLFSSSMPTLVVPVQDVEIIDDIEVKTDGIN 543

Query: 584  YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRE 643
            Y FSDGIGKI+   A +VA+K  L  N  P A+QIRY G KGVVA    +    +MSLR+
Sbjct: 544  YCFSDGIGKISLPFARQVAEKCGL--NHIPSAFQIRYGGYKGVVAV--DRNSFWKMSLRD 599

Query: 644  SMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVD 703
            SM KF+S    L +  W+   P FLNR+I+TL STL + DE+F  MQ+  L  L +ML +
Sbjct: 600  SMLKFESKVRMLNVTKWSESMPCFLNREIVTLFSTLGIKDEVFERMQEEQLCLLGKMLTN 659

Query: 704  SDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA 763
             + A + L +          + +     P  +P+L  ML       L  L+ + RIFVP 
Sbjct: 660  REAALDTLQSLGGVNSKNILVEMLQFDEPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPK 719

Query: 764  GRWLMGCLDELGVLEGGQCF--IQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNP 821
            GR L+GCLDE G L  GQ +  I++ +  L  C  +   R  + +   VI G VV+ KNP
Sbjct: 720  GRILIGCLDETGTLNYGQVYLCIKMKKAEL-ECADQSYFRKVDEETAIVI-GKVVVTKNP 777

Query: 822  CLHPGDIRILEAVDHPELHH--LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
            CLHPGD+R+LEAV  P+L    L DCLVFP+KG+RPH NE SG DLDGD +F++WD++LI
Sbjct: 778  CLHPGDVRVLEAVYEPQLEEKGLVDCLVFPEKGERPHPNECSGGDLDGDQFFISWDKDLI 837

Query: 880  PPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGA 939
            P   +  PPM+Y     + +   V   +I +FF  +M+N+ LG I  AH+VHAD   Y A
Sbjct: 838  PCQTE--PPMDYTGRRPRIMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPYKA 895

Query: 940  LDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQ 999
              ENC+ LA L + AVDF KTG    MP  LKP+ +PDFM +     Y S+ +LG+LYR 
Sbjct: 896  RSENCLALATLHSMAVDFAKTGAPAEMPRALKPREFPDFMQRGNKPMYTSSGVLGKLYRA 955

Query: 1000 SKDAYDEDISVSSEVDINP--------VDIHYDTDLEVPESVDFIADAWNQKCSYDGQLN 1051
                     +++S V I           ++ YD DLEV      I+ A   K  Y+ +++
Sbjct: 956  ---------TINSTVQIRSKFVWTKEMAELAYDHDLEVNGFESLISVAETHKEMYEERMS 1006

Query: 1052 GLLEQYKVNREEELVTGHIWSMPKY---NSRKQGELKERLKHSYSALRKEFRQVFEKMDS 1108
             L+  Y V  E+E++TG++++  ++   ++R+ GE+KER+  S   L++E ++ F+   S
Sbjct: 1007 LLMSYYDVEYEDEILTGNMYNKAQFLLRDNRRYGEMKERIVLSVKDLQREAKEWFK---S 1063

Query: 1109 DCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLA 1168
             C    E +K       ASAWY VTYHP + ++ ++            LSF WI  D L 
Sbjct: 1064 SCSKADEHQK------LASAWYYVTYHPNYFEERMN-----------SLSFPWIVGDILL 1106

Query: 1169 RIKIR 1173
            RIK R
Sbjct: 1107 RIKSR 1111


>gi|308080784|ref|NP_001183867.1| uncharacterized protein LOC100502460 [Zea mays]
 gi|89473792|gb|ABD72708.1| RNA-dependent RNA polymerase [Zea mays]
 gi|374257933|gb|AEZ01781.1| RNA-dependent DNA polymerase [Zea mays]
 gi|414586834|tpg|DAA37405.1| TPA: mediator of paramutation1 [Zea mays]
          Length = 1127

 Score =  558 bits (1437), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 389/1147 (33%), Positives = 578/1147 (50%), Gaps = 119/1147 (10%)

Query: 78   HAFVHFAMPTYVTRAVDAA--GRTELFLNGRALKVSLGPENPFRLNQRGRT-STPFKLPD 134
            H FV F      T A+D A  GR   FL G  L VS     P R +   R      +   
Sbjct: 59   HGFVQFDSSAAATHAIDLASSGRLPPFL-GSCLSVS-----PARADLLPRAPDLSLRAAS 112

Query: 135  VCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCE 194
              + +G  V+  E  VA+     G    V P          R +   LK  ++       
Sbjct: 113  ASLILGNRVAERELEVAYS--CDGVRAEVIPR--------MRRVDLYLKHDSQ------S 156

Query: 195  FKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDML-----DDD 249
            +K+E L  +IN           AILLQL  +PR+    +   +      D       D  
Sbjct: 157  YKLEVLFEDINECFGCHLDGTGAILLQLTYAPRIHIAISGSTVKSRFTDDRFHACKEDAK 216

Query: 250  DPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITY------LGERRVQ----VDSL 299
              W+R  DFTP+ + G C++  + +S      +S ++        LGE  +       S 
Sbjct: 217  FAWVRALDFTPNSSFGECSTLVLKLSK--GASVSYILESLPFSGELGELAIASMDVFGSS 274

Query: 300  SRPITIREEPD-FEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLL 358
            S  + + + P+ F VP               +E++F +N+++H G +    ++   F +L
Sbjct: 275  SNVVPLVDCPNGFSVP---------------YEVLFRLNSLVHMGKLVARHVNADLFKVL 319

Query: 359  RGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVI 418
               S +      + +   K   ++  + ++     +    +     ++   ++   R+ I
Sbjct: 320  EDLSIDTLRRIFEKMSKLKSTCYEPLQFIRHEAHSMNMRKKALSNKRESGKLMRCYRIHI 379

Query: 419  TPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLS------YFIAPI 472
            TP+K YCL PE E+SN V++ + + A  F RVTF+DE    ++ N LS      +F  P+
Sbjct: 380  TPSKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSARTEQGFFSKPL 439

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
                       KT ++ R+ SIL  GF +  +K+ FLAFS+SQLR  S W F+ +   + 
Sbjct: 440  -----------KTGLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTA 488

Query: 533  LDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK----RNGYVFS 587
             +I++WMG F D ++++KCAARMGQ FSS+  T EV   +V+  +PDI+       Y+FS
Sbjct: 489  ENIRRWMGHFEDIRSVSKCAARMGQLFSSSRQTFEVSSYDVEV-IPDIEVTTDGTKYIFS 547

Query: 588  DGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNK 647
            DGIGKI+   A +VA+ + LD   PP A+QIRY G KGV+   P       +SLR SM K
Sbjct: 548  DGIGKISTRFARQVAKLIGLDPAHPPSAFQIRYGGYKGVITIDPTS--FFNLSLRPSMKK 605

Query: 648  FQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA 707
            F+S  T L I +W++ QP ++NR+II+LLSTL + DE+F SMQ   + + + ML + + A
Sbjct: 606  FESKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNKEAA 665

Query: 708  FEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWL 767
              VL         TAA ML  G+ P +EP+L  +L   RA +L  +R + +I V  GR L
Sbjct: 666  LSVLGKIGGGDTKTAADMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKGRVL 725

Query: 768  MGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGD 827
            +GCLDE   LE GQ +I++++      +S+      +  K  VI G V I KNPCLHPGD
Sbjct: 726  IGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIVGKVAITKNPCLHPGD 785

Query: 828  IRILEAVDHPEL--HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS 885
            +R+LEAV  P L    L DC+VFPQ+G+RPH NE SG DLDGDL+F+TWD+ LIP  +K 
Sbjct: 786  VRVLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFITWDDKLIP--EKV 843

Query: 886  WPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCI 945
              PM+Y A   + +   V   +I + F  +M+N+ LG I  AH++HAD     A    C+
Sbjct: 844  DAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAHLIHADRDPLKARSPECV 903

Query: 946  LLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYD 1005
             LA L + AVDF KTG    MP  L+P+ +PDFM +     Y SN +LG+LYR +   ++
Sbjct: 904  QLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYVSNGVLGKLYRAAL-RHE 962

Query: 1006 EDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEEL 1065
            ED    + +   P    YD DLEV    +F+  A  +  +Y  +L  L+  Y   RE+E+
Sbjct: 963  ED--AEALLPAGPPSCVYDPDLEVAGFDEFLDAAEERYEAYAERLGALMTYYSAEREDEI 1020

Query: 1066 VTGHIWSMPKY---NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALF 1122
            +TG+I +   Y   ++++  E+K+R+  +  AL  E R         C+   ED+ +   
Sbjct: 1021 LTGNIRNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLRA----CK---EDDAS--- 1070

Query: 1123 ERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKI--RCREMANI 1180
             R ASAWY VTYHP            D        SF WI  D L  IK   RCR+    
Sbjct: 1071 -RVASAWYHVTYHP------------DRRGEKRFWSFPWIICDTLLAIKAARRCRKRVE- 1116

Query: 1181 DTSKPVN 1187
            D + P++
Sbjct: 1117 DAAVPMD 1123


>gi|356513586|ref|XP_003525493.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
          Length = 1262

 Score =  554 bits (1428), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 354/1003 (35%), Positives = 534/1003 (53%), Gaps = 66/1003 (6%)

Query: 195  FKVEFLVREINLVKQY---SEFSCVAILLQLASSPRVWYRTADDDILVLVPFDML----- 246
            +++EFL  +I     Y    +    A+LL++   PR++ +    D+      D       
Sbjct: 151  YRLEFLFEDILESHGYCLGEDAKLNALLLKMKFGPRIYKKKTGADVAAKFRGDRYRFCKE 210

Query: 247  DDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIR 306
            D +  W+RTTDF+P  +IG   S+   I   H       +       +  ++L R + + 
Sbjct: 211  DFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLA-----LDVFKSFPLYKENL-RDLALE 264

Query: 307  EEPDF-EVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREV 365
            +  +F     + P      +  + +E +F +N+++H   I+   + D   DLL G   E 
Sbjct: 265  DGEEFCSSTEAVPLVKRASQSKLPYEALFQLNSLVHTQKISLASVDDELIDLLAGLDEET 324

Query: 366  NVAALKHIYSYKWPVFDACKRLKLVQEWLLKD-----PELYKGPKQIDDIVEVRRLVITP 420
                   ++   +  ++  K +K  Q  +L +     P+  +      +I+   R +ITP
Sbjct: 325  RAVIFLKLHKMSFTCYEPLKFVK-TQLHVLSNKKKGLPQSSQKRLTDSNIMSCHRALITP 383

Query: 421  TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
            TK YCL PE+E SN V++ +   A  F+R+TF++E    +  N +S  +        L S
Sbjct: 384  TKIYCLGPELETSNHVVKHFASHASDFMRITFVEENWNKLPTNAVSTGVQK-----GLFS 438

Query: 481  FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540
               KT ++KR+ +IL  G  +  ++F FLAFS+SQLR  S W F+ +      DI++WMG
Sbjct: 439  KPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAADIREWMG 498

Query: 541  RFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK--RNG--YVFSDGIGKITP 595
             F + ++++KCAARMGQ FSS+  T EV   +V+  +PD++   +G  Y FSDGIGKI+ 
Sbjct: 499  CFNNIRSVSKCAARMGQLFSSSMQTFEVVSQDVEI-IPDVEVISDGVSYCFSDGIGKISQ 557

Query: 596  DLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTL 655
              A +VAQKLKLD  P   A+QIRY G KGV+A    +    ++SLR SM KF+S ++ L
Sbjct: 558  SFARQVAQKLKLDHTP--SAFQIRYGGFKGVIAV--DRRSFRKLSLRSSMLKFESKNSML 613

Query: 656  EICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAAC 715
             +  W+   P FLNR+II+LLSTL V DE+  +MQ   L  L +ML DS  A EVL +  
Sbjct: 614  CVTKWSESMPCFLNREIISLLSTLGVKDEVLLAMQHDQLDLLGRMLTDSKAALEVLESLN 673

Query: 716  AEQGNTAAIMLSAGFN-PQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDEL 774
                 +  + +   FN P +EP+L  ML    A QL  L+ + RIFVP GR L+GCLDE 
Sbjct: 674  GADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDET 733

Query: 775  GVLEGGQCFIQVSEPFLGNCFSKHGSRFAETK-KLQVIKGFVVIAKNPCLHPGDIRILEA 833
            G+L  GQ F++++       F     R  +      +I G VV+ KNPCLHPGDIR+L+A
Sbjct: 734  GLLNYGQVFVRITVTKTREKFGDENLRKVDGDDNTCIIVGKVVVTKNPCLHPGDIRVLDA 793

Query: 834  VDHPELHH--LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEY 891
            +   EL    L DCLVFPQKG RPH NE SG DLDGDL+F++WD++LIP   ++  PM+Y
Sbjct: 794  IYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIPCQTEA--PMDY 851

Query: 892  NAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELA 951
                 + +   V   +I +FF  +M+N+ LG I  AH+VHAD  +  A    C+ LAEL 
Sbjct: 852  TGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREQDKAKSRKCLELAELH 911

Query: 952  ATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVS 1011
            + AVDF KTG    MP  LKP+ +PDFM +     Y S  +LG+LYR   ++  + I  S
Sbjct: 912  SMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLGKLYRAIIESQMQ-IRYS 970

Query: 1012 SEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIW 1071
                    +  YD  LEV     F+  A   K  Y  +++ L++ Y    E+E++ G++ 
Sbjct: 971  FVWSEKHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMSSLMDFYGAETEDEMLLGNLQ 1030

Query: 1072 SMPKY---NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASA 1128
            +   Y   ++R+ G++K+R+  S   L++E ++ FE   + CE          ++  ASA
Sbjct: 1031 NRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFE---TSCEPHE-------YKPMASA 1080

Query: 1129 WYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
            WY VTYHP +  +           S   LSF WI  + L +I+
Sbjct: 1081 WYHVTYHPSYYCRE----------SPCFLSFPWIVGEILLQIR 1113


>gi|255540733|ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
 gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
          Length = 983

 Score =  554 bits (1428), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 365/985 (37%), Positives = 533/985 (54%), Gaps = 79/985 (8%)

Query: 217  AILLQLASSPRVWYRTADDDILVLVPFDML-----DDDDPWIRTTDFTPSGAIGRCNSYR 271
            AILL+L    R++ + +  DI      D       D D  W+RTTDF+   ++G+  S+ 
Sbjct: 23   AILLKLKYGARIYKKISGPDIASKFSADRYHMCKEDFDFIWVRTTDFSSVKSVGQSTSFC 82

Query: 272  ISIS-SRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSD--PFFCIHYEEGI 328
              I        + K   Y  E R +V        I E+ +     S+  P      +  +
Sbjct: 83   WEIEEGLEASDIFKSFPYYTEAREEV--------ILEDGEEWGSASEIVPLVKCGSDSKL 134

Query: 329  SFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLK 388
             +EI+F +N+++H   I+   +  +    L   + +     L+ ++      +D    L 
Sbjct: 135  PYEILFQLNSLVHTQKISLAAVDTNLITTLGSLTIDTATMILQKLHKLAVTCYDP---LA 191

Query: 389  LVQEWL------LKDPELYKGPKQID-DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYK 441
             +++ L      LK P        ++ +I+   R +ITP+K YCL PE+E SN V++ + 
Sbjct: 192  FIKKQLHVPGRNLKRPFFSSSKNLVNHNIMSCHRALITPSKIYCLGPELESSNYVVKNFA 251

Query: 442  DLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYL 501
              A  F+RVTF++E    + AN +S     I R I    F  +T ++ R+ SIL  G  +
Sbjct: 252  SYASDFMRVTFVEEDWSKLPANAIS---MSIQRGIFAKPF--RTGIYHRILSILRDGIVI 306

Query: 502  CGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSS 560
              +KF FLAFS+SQLR  S W F+ + K    +I++WMG F    +I+KCAARMGQ FSS
Sbjct: 307  GAKKFEFLAFSASQLRSNSVWMFASNDKKKAEEIREWMGCFNKIHSISKCAARMGQLFSS 366

Query: 561  TYATVEVPPTEVDPELPDIKRN----GYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAY 616
            +  T  V P +++  +PDI+       Y FSDGIGKI+   A +VAQK  L  N  P A+
Sbjct: 367  SKQTFIVSPQDMEI-IPDIEVTSDGINYCFSDGIGKISLSFARQVAQKCGL--NRTPSAF 423

Query: 617  QIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLL 676
            QIRY G KGV+A    +    ++SLR+SM KF+S +  L +  W+   P +LNR+IITLL
Sbjct: 424  QIRYGGYKGVIAV--DRNSFRKLSLRDSMCKFESENRMLNVTKWSESMPCYLNREIITLL 481

Query: 677  STLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL-TAACAEQGNTAAIMLSAGFNPQTE 735
            +TL V DE+F  +Q   L  LN+ML + + A  VL   A A   N    ML  G+ P  E
Sbjct: 482  TTLGVKDEIFEGLQQQQLQLLNRMLTNRESALNVLENLAWANCKNILIKMLVQGYEPNVE 541

Query: 736  PHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVS--EPFLGN 793
            P+L  ML       L  LR + RIFVP GR L+GCLDE  +L+ GQ +++++  +  L +
Sbjct: 542  PYLSMMLQAYHENLLVELRSRCRIFVPKGRILIGCLDETRILDYGQVYVRITMTKAELQD 601

Query: 794  CFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHH--LYDCLVFPQK 851
                   R  ET    V+ G V++ KNPCLHPGDIR+LEAV   EL    L DC++FPQK
Sbjct: 602  ADQASFHRVDETT--AVVTGKVIVTKNPCLHPGDIRVLEAVYEVELEEKGLVDCILFPQK 659

Query: 852  GDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEF 911
            G+RPH NE SG DLDGD +F++WD+ LIP   +S  PM+Y     + +   V   +I +F
Sbjct: 660  GERPHPNECSGGDLDGDQFFISWDKGLIPGETES--PMDYQGRRPRKMDHDVTLEEIQKF 717

Query: 912  FAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK 971
            F  +M+N+ LG I  AH+VHAD     A    C+ LAEL + AVDF KTG    MP  LK
Sbjct: 718  FIDYMINDTLGAISTAHLVHADREPDKARSSKCLQLAELHSMAVDFAKTGAPAEMPKALK 777

Query: 972  PKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDIS--VSSEVDINPVDIHYDTDLEV 1029
            PK +PDFM +   + Y S  +LG+LYR + D+  +  S  V +E   N  +  YD DLEV
Sbjct: 778  PKEFPDFMERIDKKMYISGGVLGKLYRGTLDSTRQQRSKFVWTE---NIAEATYDHDLEV 834

Query: 1030 PESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKY---NSRKQGELKE 1086
                +F+  A + K  Y  +L+GL++ Y+  +E+E++TG++ +   Y   ++R+ G+ K+
Sbjct: 835  KGFEEFVEIAISHKDMYVEKLSGLMDYYEAKKEDEILTGNLQNKAMYLQRDNRRYGDTKD 894

Query: 1087 RLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQ 1146
            R+  S  +L+KE ++ FE   S C+     EK    +R ASAWY VTYHP + ++     
Sbjct: 895  RILISVKSLQKEAKEWFE---SCCQ---AKEK----QRLASAWYHVTYHPSYFQE----- 939

Query: 1147 EQDSARSVVLLSFAWIANDYLARIK 1171
                   +  LSF WI  D L  IK
Sbjct: 940  ------GITCLSFPWIVADILLNIK 958


>gi|356565022|ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
          Length = 1120

 Score =  554 bits (1427), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 357/1001 (35%), Positives = 534/1001 (53%), Gaps = 62/1001 (6%)

Query: 195  FKVEFLVREINLVKQY---SEFSCVAILLQLASSPRVWYRTADDDILVLVPFD---MLDD 248
            +++EFL  +I     Y    +    A+LL++   PR++ +    D+      D    L +
Sbjct: 150  YRLEFLFEDILESHGYCLGEDARLNALLLKMKFGPRIYKKKTGTDVAANFRGDRYRFLKE 209

Query: 249  DDP--WIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIR 306
            D    W+RTTDF+P  +IG   S+   I   H    S V T     +  +  L+  +  R
Sbjct: 210  DFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLA--SDVFTSFPLYKENLRDLA--LEDR 265

Query: 307  EEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVN 366
            EE    +  + P      +  + +E +F +N+++H   I+   + D   DLL     E  
Sbjct: 266  EEL-CSLTEAVPLVKHATQSKLPYEAVFQLNSLVHTQKISLASVDDELIDLLADLDEETR 324

Query: 367  VAALKHIYSYKWPVFDACKRLKLVQEWLL-KDPELYKGPKQI---DDIVEVRRLVITPTK 422
                + ++   +  ++  K +K     L  K   L + P+      +I+   R +ITPTK
Sbjct: 325  AVVFQKLHKMSFTCYEPLKFVKTQLHVLSNKKKGLLQSPQNRLTDSNIMSCHRALITPTK 384

Query: 423  AYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFS 482
             YCL PE+E SN V++ +  LA  F+R+TF++E    +  N +S  +   +    L    
Sbjct: 385  IYCLGPELETSNHVVKHFASLASDFMRITFVEENWNKLPTNAVSTGVQKGIFSKPL---- 440

Query: 483  QKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRF 542
             KT ++KR+ +IL  G  +  ++F FLAFS+SQLR  S W F+ +      DI++WMG F
Sbjct: 441  -KTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAADIREWMGCF 499

Query: 543  TD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG----YVFSDGIGKITPDL 597
             + ++++KCAARMGQ FSS+  T EV   +V+  +PDI+       Y FSDGIGKI+   
Sbjct: 500  NNIRSVSKCAARMGQLFSSSMQTFEVASEDVEM-IPDIEVTSDGVSYCFSDGIGKISQCF 558

Query: 598  AMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEI 657
            A +VAQKL LD    P A+QIRY G KGV+A    +    ++SLR SM KF+S++  L +
Sbjct: 559  ARQVAQKLNLD--HTPSAFQIRYGGFKGVIAI--DRHSFRKLSLRSSMLKFESNNRMLCV 614

Query: 658  CSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAE 717
              W+   P FLNR+II+LL+TL V DE+  +MQ   L  L +ML DS  A +VL +    
Sbjct: 615  TKWSESMPCFLNREIISLLTTLGVKDEVLLAMQQDQLDLLGRMLTDSKAALDVLESLNGA 674

Query: 718  QGNTAAIMLSAGFN-PQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGV 776
               +  + +   FN P +EP+L  ML    A QL  L+ + RIFVP GR L+GCLDE G+
Sbjct: 675  DSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETGL 734

Query: 777  LEGGQCFIQVSEPFLGNCFSKHGSRFAETK-KLQVIKGFVVIAKNPCLHPGDIRILEAVD 835
            L  GQ F++++       F     R  +     ++I G VV+ KNPCLHPGDIR+L+A+ 
Sbjct: 735  LNYGQVFVRITVAKTRENFGDENLRKVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAIY 794

Query: 836  HPELHH--LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNA 893
              EL    L DCLVFPQKG RPH NE SG DLDGDL+F++WD++LIP   ++  PM+Y  
Sbjct: 795  SKELEENGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFLSWDKDLIPCQTEA--PMDYTG 852

Query: 894  AEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAAT 953
               + +   V   +I +FF  +M+N+ LG I  AH+VHAD  +  A    C+ LAEL + 
Sbjct: 853  RRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREQDKAKSRKCLELAELHSM 912

Query: 954  AVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSE 1013
            AVDF KTG    MP  LKP+ +PDFM +     Y S  +LG+LY    ++  + I  S  
Sbjct: 913  AVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLGKLYHAIIESQMQ-IRYSFV 971

Query: 1014 VDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSM 1073
                  +  YD  LEV     F+  A   K  Y  +++ L++ Y    E+E++ G++ + 
Sbjct: 972  WSEKHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMSSLMDFYGAETEDEMLLGNVQNR 1031

Query: 1074 PKY---NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWY 1130
              Y   ++R+ G++K+R+  S   L++E ++ FE   + C+          ++  ASAWY
Sbjct: 1032 ASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFE---TSCQPRE-------YKPMASAWY 1081

Query: 1131 QVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
             VTYH     +S   QE     S   LSF WI  D L +I+
Sbjct: 1082 HVTYH-----RSHYCQE-----SPCFLSFPWIVGDILLQIR 1112


>gi|224133496|ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
 gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase [Populus trichocarpa]
          Length = 1110

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 355/993 (35%), Positives = 522/993 (52%), Gaps = 103/993 (10%)

Query: 217  AILLQLASSPRVWYRTADDDILVLVPFDML-----DDDDPWIRTTDFTPSGAIGRCNSYR 271
            A++L+L   PR++ + +   I      +       D D  W+RTTD +   +IG+  S+ 
Sbjct: 176  AVVLKLRYGPRIYQKISGPGIASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQSTSFC 235

Query: 272  ISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMS------DPFFCIHYE 325
              I                      + L    T R  P ++  M+         FC   E
Sbjct: 236  WEIG---------------------EGLEASDTFRNFPYYQEDMNRLDLEDGEEFCSASE 274

Query: 326  ---------EGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSY 376
                     + +++E++F +N+++H   I+   +      +LR  +    +  L+ ++  
Sbjct: 275  TVPLIRCGSDKLAYEVLFQLNSLVHTQKISLAAVDSDLIKILRNLTVNTAIIILQKLHKL 334

Query: 377  KWPVFDACKRLKLVQEWLLKDPELYKGPKQI--DDIVEVRRLVITPTKAYCLPPEVELSN 434
            K   +D    +K      L  P     PK +  ++I+   R +ITP+K +CL PE E SN
Sbjct: 335  KMTCYDPLSFVKQSLRESLSSP-----PKSLTENNIMSCHRALITPSKIFCLGPEYETSN 389

Query: 435  RVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSI 494
             V++ +   A  F+RVTF++E    + AN +S     I R I    F  +T ++ R+ SI
Sbjct: 390  YVVKHFAQYASDFIRVTFVEEDWSKLPANAIS---TSIQRGIFAKPF--RTGIYHRILSI 444

Query: 495  LSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAAR 553
            L  GF +  ++F FLAFS+SQLR  S W F+ +      DI+KWMG F   ++++KCAAR
Sbjct: 445  LRDGFVIGAKRFEFLAFSASQLRSNSVWMFASNNGVKAEDIRKWMGCFDKIRSVSKCAAR 504

Query: 554  MGQCFSSTYATVEVPPTEVDPELPDIKRNG----YVFSDGIGKITPDLAMEVAQKLKLDV 609
            MGQ FSS+  T  VP  +V+  +PDI+       Y FSDGIGKI+   A +VA K  L  
Sbjct: 505  MGQLFSSSLQTFVVPVQDVEI-IPDIEVTTDGIDYCFSDGIGKISLSFAKQVAHKCGL-- 561

Query: 610  NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLN 669
            +  P A+QIRY G KGVVA    +    ++SLR SM KF S +  L +  W+   P +LN
Sbjct: 562  SHTPSAFQIRYGGYKGVVAV--DRNSFRKLSLRSSMLKFDSENRMLNVTKWSESMPCYLN 619

Query: 670  RQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL-TAACAEQGNTAAIMLSA 728
            R+II+LLSTL V DE+F ++Q   L +L +ML + + A +VL   A A+  N    ML  
Sbjct: 620  REIISLLSTLGVADEIFQALQQKQLYRLRKMLTNKESALDVLENLAWADSKNILVQMLLQ 679

Query: 729  GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVS- 787
            G+ P  EP+L  ML       L  LR + RIFVP GR L+GCLDE G+L+ GQ +++++ 
Sbjct: 680  GYEPNVEPYLSMMLQAYHENSLMELRSRCRIFVPKGRILIGCLDESGILDYGQVYVRITM 739

Query: 788  -EPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHH--LYD 844
             +  L  C      +  E+     I G V + KNPCLHPGDIR+LEAV   EL    L D
Sbjct: 740  TKAELQCCDQSFFRKVDEST--STIIGEVAVTKNPCLHPGDIRVLEAVYDVELEEKGLVD 797

Query: 845  CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVD 904
            C++FPQ G RPH NE SG DLDGD +F++WDE L+P   ++  PM+Y     + +   V 
Sbjct: 798  CIIFPQNGGRPHPNECSGGDLDGDQFFISWDEGLLPCHTEA--PMDYVGGRQRIMDHNVT 855

Query: 905  QRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIV 964
              +I  FF  +M+N+ LG I  AH+VHAD     A  E C+ LA L + AVDF KTG   
Sbjct: 856  LEEIQRFFVDYMINDTLGAISTAHLVHADCEPDKARSEKCLQLATLHSMAVDFAKTGAPA 915

Query: 965  TMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISV---SSEVDINPVDI 1021
             MP +LKP+ +PDFM +   Q Y S+ +LG+LYR   D+  ++ S    S ++     + 
Sbjct: 916  EMPLYLKPREFPDFMERAEKQMYISDGVLGKLYRDIHDSTRQERSNFMWSKKI----AEA 971

Query: 1022 HYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKY---NS 1078
             YD DLEV    DF+  A   K  Y  +++ L++ Y    E+E++TG++   P Y   ++
Sbjct: 972  TYDQDLEVKGFEDFLGIASIYKEKYMEKMSTLMDYYGAKTEDEILTGNLRHRPTYLQRDN 1031

Query: 1079 RKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEW 1138
            RK G++K+R+  S   L+KE ++ FE   S C   +  E   +    ASAWY VTYHP +
Sbjct: 1032 RKYGDVKDRILVSLKNLKKEAKEWFE---SSC---NPTEHQCM----ASAWYHVTYHPTY 1081

Query: 1139 VKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
              + ++            LSF WI  D L  IK
Sbjct: 1082 FHERMN-----------CLSFPWIVGDILLNIK 1103


>gi|251765121|sp|Q0DXS3.2|RDR1_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 1; Short=OsRDR1
          Length = 740

 Score =  550 bits (1418), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 328/757 (43%), Positives = 443/757 (58%), Gaps = 46/757 (6%)

Query: 421  TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
            +  Y   PE+ +SNRV+R +    + FLR++F+DE  + + A  LS   A          
Sbjct: 7    STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSAS-------GH 59

Query: 481  FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540
             + +T ++KRV S+LS G  + G+ F FLAFSSSQLRD SAW F+     +  DI+ WMG
Sbjct: 60   DANRTALYKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMG 119

Query: 541  RFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKITPDL 597
             F + +N+AK AAR+GQ FSS+  T++V   EV+ E+ DIK NG  +VFSDGIGKI+   
Sbjct: 120  DFRNIRNVAKYAARLGQSFSSSTETLKVQKYEVE-EISDIK-NGTQHVFSDGIGKISSAF 177

Query: 598  AMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEI 657
            A EVA K  L     P A+QIRY G KGVVA  P      ++SLR+SM KFQS + T+++
Sbjct: 178  ANEVAMKCNLK-RFAPSAFQIRYGGYKGVVAVDPTSR--WKLSLRKSMLKFQSDNITVDV 234

Query: 658  CSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT-AACA 716
             +++++QPGFLNRQ+ITLLSTL V D +F   Q+  +++LN+M+ D   A E +      
Sbjct: 235  LAYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMG 294

Query: 717  EQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGV 776
            E  N    +L  G+ P  EP+L  +L   RA++L  L+ K+RI +P GR +MGCLDE   
Sbjct: 295  EITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRT 354

Query: 777  LEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDH 836
            L+ GQ FI+ +     N       RF  T       G VVIAKNPCLHPGDIRIL AVD 
Sbjct: 355  LKYGQVFIRATSGVNDN------DRFTVT-------GKVVIAKNPCLHPGDIRILHAVDV 401

Query: 837  PELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEA 896
            P LHH+++C+VFPQ+G RPH NE SGSDLDGD+YFV+WD +LIPP  +   PM+Y  A  
Sbjct: 402  PVLHHMFNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPP--RMVTPMDYTPAPT 459

Query: 897  KTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVD 956
            +TL   V   ++ E+F  ++VNE+LG I NAHVV AD  +  A    CI LA+L + AVD
Sbjct: 460  ETLDHDVTIEEVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVD 519

Query: 957  FPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDI 1016
            FPKTG    +P  L  K YPDFM K    +Y+S  ++G+LYR+ K         + EV  
Sbjct: 520  FPKTGVPALIPPELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIKHFTREV-- 577

Query: 1017 NPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKY 1076
                  YDTD+ V    D+I +A   K  YD +L  L++ Y +  E E+++G I  M K 
Sbjct: 578  --ARRSYDTDMIVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKN 635

Query: 1077 NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHP 1136
             ++K      RL  +  +LRKE R  F +M  D      D   A    KASAWY VTYHP
Sbjct: 636  FTKKSDADAIRL--AVRSLRKEARSRFSEMSLDDNGHGHDASEA----KASAWYHVTYHP 689

Query: 1137 EWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIR 1173
            E+     +  E+        +SF W   + L RIK R
Sbjct: 690  EFWGCYNEGYERPH-----FISFPWCIYEKLLRIKQR 721


>gi|326493668|dbj|BAJ85295.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1127

 Score =  550 bits (1417), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 371/1019 (36%), Positives = 541/1019 (53%), Gaps = 97/1019 (9%)

Query: 195  FKVEFLVREINLVKQYSEFSCVAILLQLASSPR---------VWYRTADDDILVLVPFDM 245
            FK+E    +I    Q S      ILLQL  +PR         V+ R +DD       F  
Sbjct: 157  FKLEVFFEDIRNCYQCSFDGAGGILLQLMYAPRICTTISGPAVYSRFSDDR------FHA 210

Query: 246  LDDDD--PWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPI 303
              +D    W+R  DFTP+ + G+C++  + +       +S ++  L       + +   +
Sbjct: 211  CKEDAKFTWVRALDFTPNHSFGKCSTLALVLD--EGAPVSFILNSLPLSGELGELVISSM 268

Query: 304  TIREEPDFEVPMSD-PFFCIHYEEGISFEIMFLVNAVMHKG-IINQHQLSDSFFDLLRGQ 361
                     VP+ D P  C      +S+E++F +N+++H G ++ +H  +D F  L    
Sbjct: 269  DFFGSSSKVVPLVDCPSGC-----SVSYEVLFRLNSLVHMGKLVAKHVNADLFKAL---- 319

Query: 362  SREVNVAALKHIYSYKWPV-FDACKRLKLVQEWLLK-----DPELYKGPKQIDDIVEVRR 415
              E+ V   + I+     + F   + L+ +Q+         D  L    +    ++   R
Sbjct: 320  -EEIPVHISRRIFEKMSKLEFTCYEPLQFIQQEAHSRKRSHDALLSSKTEGEGKLMMCYR 378

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475
            + ITP+K YCL PE E+SN V++ +K  A  F RVTF+DE    +  + +S   A   R 
Sbjct: 379  IHITPSKIYCLGPEEEVSNYVVKHHKQYASDFTRVTFVDEDWSKLFPDAIS---ARTGRG 435

Query: 476  ITLNSFSQ--KTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVL 533
                 FSQ  KT ++ R+ SIL  GF +  +K+ FLAFS+SQLR  S W F+ +      
Sbjct: 436  F----FSQPLKTGLYYRILSILKEGFSIGPKKYEFLAFSASQLRGSSVWMFASNDSLKAE 491

Query: 534  DIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK----RNGYVFSD 588
            DI++WMG F + ++++KCAARMGQ FSS+  T+++ P +V+ E+PDI+       Y+FSD
Sbjct: 492  DIRRWMGNFEEIRSVSKCAARMGQLFSSSRQTLDILPRDVE-EIPDIEVTTDGTKYIFSD 550

Query: 589  GIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR-MSLRESMNK 647
            GIGKI+   A E+A ++ LD   PP A+QIRY G KGVVA  P   D  R +SLR SM K
Sbjct: 551  GIGKISERFAKEMACRIGLDYTNPPSAFQIRYGGYKGVVAVDP---DSFRNLSLRPSMKK 607

Query: 648  FQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA 707
            F+S      I S ++ QP ++NR+II+LLSTL + DE+F  MQ   + +L++ML + + A
Sbjct: 608  FESKSRMFNITSTSKSQPCYMNREIISLLSTLGIRDEIFELMQQHDMRELDEMLTNREAA 667

Query: 708  FEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWL 767
              VL    + +  TA+ +L  G+ P  EP+L  +L   +  +L  +R + +I VP GR L
Sbjct: 668  LSVLGKIGSAETKTASKILLQGYEPSLEPYLLMILKAHQDNRLTDIRTRCKIHVPKGRVL 727

Query: 768  MGCLDELGVLEGGQCFIQV---SEPFLGNC---FSKHGSRFAETKKLQVIKGFVVIAKNP 821
            +GCLDE G LE GQ +I++   S+    NC   FS+   +     K  V+ G V ++KNP
Sbjct: 728  IGCLDETGELEYGQVYIRITKNSKEQKDNCQPYFSEDNGK----DKTAVVVGKVAVSKNP 783

Query: 822  CLHPGDIRILEAVDHPELH--HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
            CLHPGDIR+LEAV    L+  +L DC+VFPQ+G+RPH NE SG DLDGDLYF+TWDE LI
Sbjct: 784  CLHPGDIRVLEAVYDHGLYSKNLVDCVVFPQRGERPHPNECSGGDLDGDLYFITWDEKLI 843

Query: 880  PPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGA 939
            P    S  PM+Y AA  + +   V   +I ++F  +M+N++LG I  AH+VHAD     A
Sbjct: 844  PEKVDS--PMDYTAARPRIMDHVVTLEEIQKYFVDYMINDSLGAISTAHLVHADRHPMKA 901

Query: 940  LDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQ 999
                C+ LA L + AVDF K+G    MP  L+PK YPDFM +    +Y SN  LG+LYR 
Sbjct: 902  RSPECLQLAALHSMAVDFAKSGAPAEMPRSLRPKEYPDFMERWDKPTYISNGPLGKLYRA 961

Query: 1000 SKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKV 1059
            +        + SS     P    +D DLEVP   +F+  A      Y  +L+ L+  Y  
Sbjct: 962  AASRMQSAPAPSSSAQPIPA---FDPDLEVPGFEEFLVSAEECYDLYAEKLSTLMSYYGT 1018

Query: 1060 NREEELVTGHIWSMPKY---NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSED 1116
              E+E++TG+I +   Y   ++++  E+K+R+  S   L KE R  F             
Sbjct: 1019 EHEDEILTGNIRNRLLYLKKDNKRYFEMKDRIIDSVEGLHKEVRGWFTS----------- 1067

Query: 1117 EKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCR 1175
               A   R+ASAWY + YHP+          Q   R     SF WI  D L  IK   R
Sbjct: 1068 RPKAEAARRASAWYHMAYHPD--------HHQPGKRR--FWSFPWIICDELLTIKESSR 1116


>gi|449518949|ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
          Length = 1117

 Score =  544 bits (1402), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 345/954 (36%), Positives = 508/954 (53%), Gaps = 83/954 (8%)

Query: 247  DDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIR 306
            D D  W+RTT+F+P  ++G+  S+   +                E  +Q   +       
Sbjct: 209  DYDYLWVRTTEFSPMRSVGQSTSFCWEV----------------EEDLQASDIFSCFPFY 252

Query: 307  EEPDFEVPMSD-PFFCIHYE----------EGISFEIMFLVNAVMHKGIINQHQLSDSFF 355
            +E   ++ + D   FC   E            +++E+ + +N+++H   I+    +    
Sbjct: 253  KETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQKISLSAANQDLI 312

Query: 356  DLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQ---IDDIVE 412
            D L     +  +  L+ ++  K+  +D    LK       ++ +      Q    ++++ 
Sbjct: 313  DFLCTLDIDTALNVLQRLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPPSSQKRLSNNVMN 372

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
              R+++TP++ YCL PE+E SN V++ +   A  F+RVTF++E    + A  ++     I
Sbjct: 373  CYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGAVT---TSI 429

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
             R I    +  +T ++ R+ ++L  G  +  ++F FLAFS+SQLR  S W F+       
Sbjct: 430  QRGILSKPY--RTEIYHRIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNLKA 487

Query: 533  LDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG----YVFS 587
             +I++WMG F   ++I+KCAARMGQ FSS+  T+ VP  +V+  +PDI+ N     Y FS
Sbjct: 488  EEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRDVEI-IPDIEVNTDGIDYCFS 546

Query: 588  DGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNK 647
            DGIGKI+   A +VA K    VN  P A+QIRY G KGV+A    +    ++SLR+SM K
Sbjct: 547  DGIGKISLSFARQVADKC--GVNHIPSAFQIRYGGYKGVIAV--DRNSFRKLSLRDSMLK 602

Query: 648  FQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA 707
            F+S +  L +       P +LNR+I TLLSTL V DE F ++Q   L  L +ML D DVA
Sbjct: 603  FESKNKMLNVTKCCDSMPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKDVA 662

Query: 708  FEVL-TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRW 766
              VL     A+  N    ML+ G+ P  EP+L  ML          LR + RIFVP GR 
Sbjct: 663  LNVLENFHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRI 722

Query: 767  LMGCLDELGVLEGGQCF--IQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLH 824
            L+GCLDE G+L  GQ +  I +++  L N    +     ETK   ++ G VV+ KNPCLH
Sbjct: 723  LLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETK--SILLGKVVVTKNPCLH 780

Query: 825  PGDIRILEAVDHPELHH--LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPS 882
            PGD+R+LEA+ H EL    L DCL+FPQKG RPHTNE SG DLDGDLYF++WDENLIPP 
Sbjct: 781  PGDVRVLEAIFHVELEEKGLVDCLIFPQKGARPHTNECSGGDLDGDLYFISWDENLIPP- 839

Query: 883  KKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDE 942
             K+  PM+Y     + +   V   +I +FF  +M+N+ LG I  AH+VHAD     AL  
Sbjct: 840  -KTEAPMDYTGRRPRIMDHDVKLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSA 898

Query: 943  NCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKD 1002
             C+ LA L + AVDF KTG    MP  LKP+ +PDFM +     Y S+ +LG+LYR +  
Sbjct: 899  KCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAVK 958

Query: 1003 AYDEDIS--VSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVN 1060
            + +++ S  V SE     +   YD DLEV     F+  A   K  Y  +++ L+  Y   
Sbjct: 959  SIEQERSRLVWSEEAARAI---YDYDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYGAE 1015

Query: 1061 REEELVTGHIWSMPKY---NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDE 1117
             E+E++ G + S   Y   ++RK G++K+R+  S   LRKE ++ FE   + C+ L+   
Sbjct: 1016 YEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKNLRKEVKEWFE---NSCDPLNR-- 1070

Query: 1118 KNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
                    ASAWY VTYHP + K+ +             LSF W  +D L  IK
Sbjct: 1071 -----RMMASAWYHVTYHPSYFKEDM-----------FYLSFPWAVSDVLLNIK 1108


>gi|242073398|ref|XP_002446635.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
 gi|241937818|gb|EES10963.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
          Length = 1128

 Score =  544 bits (1401), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 346/1000 (34%), Positives = 530/1000 (53%), Gaps = 83/1000 (8%)

Query: 217  AILLQLASSPRVWYRTADDDILVLVPFDML-----DDDDPWIRTTDFTPSGAIGRCNSYR 271
            AILLQL  +PR++   +   +      D       D    W+R  DFTP+ + G C++  
Sbjct: 179  AILLQLTYAPRIYTAISGSTVKSRFTDDRFHACKEDAKFAWVRALDFTPNNSFGECSTLV 238

Query: 272  ISISSR-HRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFCIHYEEGISF 330
            + +S       + + + + GE  ++  ++S  +      +  VP+ D   C +    + +
Sbjct: 239  LKLSKGVPVSDILESLPFSGE--LEELAISSMLAFGSSSNV-VPLVD---CPN-GFSVPY 291

Query: 331  EIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIY----SYKWPVFDACKR 386
            E++F +N+++H G +    ++   F +L     E+++  L+ I+      K   ++  + 
Sbjct: 292  EVLFRLNSLVHMGKLVARHVNADLFKVL----EELSIDTLRRIFEKMSKLKSTCYEPLQF 347

Query: 387  LKLVQEWLLKDPELY-KGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLAD 445
            ++     + K  + +    K    ++   R+ ITP+K YCL PE E+SN V++ + + A 
Sbjct: 348  IRHEAHSMSKSKKAFLSNKKDGGKLMRCYRIHITPSKIYCLGPEEEVSNYVVKYHSEYAS 407

Query: 446  RFLRVTFMDEGLQTMNANVLS------YFIAPIVRDITLNSFSQKTRVFKRVRSILSGGF 499
             F RVTF+DE    ++ N LS      +F  P+           KT ++ R+ SIL  GF
Sbjct: 408  DFARVTFVDEDWSKLSPNALSARTEQGFFSTPL-----------KTGLYHRILSILKEGF 456

Query: 500  YLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCF 558
             +  +K+ FLAFS+SQLR  S W F+ +   +   I++WMG F D ++++KCAARMGQ F
Sbjct: 457  CIGPKKYEFLAFSASQLRGNSVWMFASNNSLTAESIRRWMGHFEDIRSVSKCAARMGQLF 516

Query: 559  SSTYATVEVPPTEVDPELPDIKRNG----YVFSDGIGKITPDLAMEVAQKLKLDVNPPPC 614
            SS+  T E+   +V+  +PDI+       Y+FSDGIGKI+   A ++A+   LD   PP 
Sbjct: 517  SSSRQTFEISSYDVEV-IPDIEVTSDGTKYIFSDGIGKISTRFARQIAKLFGLDPAHPPS 575

Query: 615  AYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIIT 674
            A+QIRY G KGV+   P       +SLR SM KF+S  T L I +W++ QP ++NR+II+
Sbjct: 576  AFQIRYGGYKGVITIDPTS--FFNLSLRPSMKKFESKSTMLNITNWSKSQPCYVNREIIS 633

Query: 675  LLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQT 734
            LLSTL + DE+F SMQ   + + + ML + + A  VL         TA+ M+  G+ P +
Sbjct: 634  LLSTLGIKDEVFESMQQDDMHESDGMLTNKEAALSVLGKIGGADTKTASEMVLQGYEPSS 693

Query: 735  EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNC 794
            EP+L  +L   RA +L  +R + +I V  GR L+GCLDE   L+ GQ +I++++      
Sbjct: 694  EPYLLMILKAHRANRLTDIRTRCKIHVQKGRVLIGCLDETCTLDYGQVYIRITKNRKEQK 753

Query: 795  FSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL--HHLYDCLVFPQKG 852
            +S+      +  K  VI G V + KNPCLHPGD+R+LEAV  P L    L DC+VFPQ+G
Sbjct: 754  YSEQPFFCNDDGKTAVIVGKVAVTKNPCLHPGDVRVLEAVYDPALDARGLIDCVVFPQRG 813

Query: 853  DRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFF 912
            +RPH NE SG DLDGDL+F+TWD+ LIP  +K   PM+Y A   + +   V   +I + F
Sbjct: 814  ERPHPNECSGGDLDGDLFFITWDDKLIP--EKVDAPMDYTATRPRIMDHAVTLEEIQKHF 871

Query: 913  AKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKP 972
              +M+N+ LG I  AH++HAD +   A    C+ LA L + AVDF KTG    MP  L+P
Sbjct: 872  VNYMINDALGVISTAHLIHADRNPLKARSPECLQLAALHSMAVDFAKTGAPAEMPVALRP 931

Query: 973  KLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPES 1032
            + +PDFM +     Y S  +LG+LYR    A   + +  + +   P    YD DLEV   
Sbjct: 932  REFPDFMERWERPMYVSTSVLGKLYRA---ALRHEENAEALLPAGPPRCVYDPDLEVAGF 988

Query: 1033 VDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKY---NSRKQGELKERLK 1089
              F+  A  Q   Y  +L  L+  Y    E+E++TG+I +   Y   ++++  E+K+R+ 
Sbjct: 989  DKFLDTAEEQYEVYAEKLGTLMTYYSAEHEDEILTGNIRNKLVYLRRDNKRYFEMKDRII 1048

Query: 1090 HSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQD 1149
             +  AL  E R              ED+ + L    ASAWY VTYHP            D
Sbjct: 1049 AAVDALHAEVRGWLRAR-------KEDDASKL----ASAWYHVTYHP------------D 1085

Query: 1150 SARSVVLLSFAWIANDYLARIKI--RCREMANIDTSKPVN 1187
                    SF W+A D L  IK   RCR+    D + P++
Sbjct: 1086 RRGEKRFWSFPWVACDTLLAIKAARRCRKRVE-DAAAPMD 1124


>gi|15237051|ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
 gi|75318859|sp|O82504.1|RDR2_ARATH RecName: Full=RNA-dependent RNA polymerase 2; Short=AtRDRP2; AltName:
            Full=Protein SILENCING MOVEMENT DEFICIENT 1; AltName:
            Full=RNA-directed RNA polymerase 2
 gi|3600048|gb|AAC35535.1| similar to hypothetical proteins in Schizosaccharomyces pombe
            (GB:Z98533) and C. elegans (GB:Z48334 and Z78419)
            [Arabidopsis thaliana]
 gi|4850292|emb|CAB43048.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
 gi|7267812|emb|CAB81214.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
 gi|332657576|gb|AEE82976.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
          Length = 1133

 Score =  543 bits (1400), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 393/1148 (34%), Positives = 580/1148 (50%), Gaps = 117/1148 (10%)

Query: 65   EVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPEN--PFRLNQ 122
            E+  T D  K    A V F      +RA   + +++L      L++S   ++  P  ++ 
Sbjct: 43   EIPTTRDNWKPRDFARVQFTTLEVKSRAQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDP 102

Query: 123  RGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFT--RDIAF 180
            R R      L D+ + +G   S ++ F A           ++ +DG   +  T  R + F
Sbjct: 103  RKR------LDDIVLTVGFPESDEKRFCA-----------LEKWDGVRCWILTEKRRVEF 145

Query: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
             +  S +    K E + E ++  ++           A LL+L   P+V+ R     + + 
Sbjct: 146  WVWESGD--CYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPKVFKRVT---VHIA 200

Query: 241  VPFD-------MLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERR 293
              F          D D  WIRTTDF+ S +IG    + + +   H G  + +  + G   
Sbjct: 201  TKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEV---HNGS-TMLDIFSGLPY 256

Query: 294  VQVDSLSRPITIREEPDFE-----VPMSDPFFCIHYEEGISF--EIMFLVNAVMHKGIIN 346
             + D+LS  +T  +   F      VP+ +         G+ F  EI+F +NA++H   I+
Sbjct: 257  YREDTLS--LTYVDGKTFASAAQIVPLLNAAIL-----GLEFPYEILFQLNALVHAQKIS 309

Query: 347  QHQLSD-SFFDLLRGQSREVNVAALKHIYSYKW----PVFDACKRLKLVQEWLLKDPELY 401
                SD     +LRG S E  +  LK ++        PVF    +++ V + +   P   
Sbjct: 310  LFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPASA 369

Query: 402  KGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMN 461
                   +I+  +R  +TP+K Y L PE+E +N V++ + +    F+RVTF++E    + 
Sbjct: 370  YKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLP 429

Query: 462  ANVLS------YFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQ 515
            AN LS      YF+ P            +T ++ RV SIL  G  +  ++F FLAFS+SQ
Sbjct: 430  ANALSVNSKEGYFVKP-----------SRTNIYNRVLSILGEGITVGPKRFEFLAFSASQ 478

Query: 516  LRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDP 574
            LR  S W F+ + K    DI++WMG F   ++I+KCAARMGQ FS++  T+ V   +V+ 
Sbjct: 479  LRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVE- 537

Query: 575  ELPDIKRNG----YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACW 630
            ++PDI+       Y FSDGIGKI+   A +VAQK  L  +  P A+QIRY G KGV+A  
Sbjct: 538  QIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL--SHVPSAFQIRYGGYKGVIAV- 594

Query: 631  PAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQ 690
              +    ++SLR+SM KF S++  L +  WT   P FLNR+II LLSTL + D MF +MQ
Sbjct: 595  -DRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQ 653

Query: 691  DSMLSKLNQMLVDSDVAFEVLTAACAEQG-NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQ 749
               LS L  ML D D A  VL     E   N    ML  G+ P +EP+L  ML     +Q
Sbjct: 654  AVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQ 713

Query: 750  LWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET-KKL 808
            L  L+ + RI VP GR L+GC+DE+G+LE GQ +++V+        S+  S F +  ++ 
Sbjct: 714  LSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLT-KAELKSRDQSYFRKIDEET 772

Query: 809  QVIKGFVVIAKNPCLHPGDIRILEAV--DHPELHHLYDCLVFPQKGDRPHTNEASGSDLD 866
             V+ G VV+ KNPCLHPGDIR+L+A+   H E     DC++FPQKG+RPH NE SG DLD
Sbjct: 773  SVVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLD 832

Query: 867  GDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICN 926
            GD +FV+WDE +IP      PPM+Y  +  + +   V   +I +FF  +M+++ LG I  
Sbjct: 833  GDQFFVSWDEKIIPSEMD--PPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVIST 890

Query: 927  AHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQS 986
            AH+VHAD     A  + C+ LA L + AVDF KTG    MP  LKP+ +PDF+ +    +
Sbjct: 891  AHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPT 950

Query: 987  YKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSY 1046
            Y S  + G+LYR  K +  +    +   D     + YD  LE      FI  A   +  Y
Sbjct: 951  YISESVFGKLYRAVKSSLAQRKPEAESEDT----VAYDVTLEEAGFESFIETAKAHRDMY 1006

Query: 1047 DGQLNGLLEQYKVNREEELVTGHIWSMPKY---NSRKQGELKERLKHSYSALRKEFRQVF 1103
              +L  L+  Y    EEE++TG + +   Y   ++R+ G++K+R+  S   L KE    F
Sbjct: 1007 GEKLTSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWF 1066

Query: 1104 EKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIA 1163
            EK    CE   E +K  L    ASAWY VTY+P    + L             LSF WI 
Sbjct: 1067 EK---SCE--DEQQKKKL----ASAWYYVTYNPNHRDEKL-----------TFLSFPWIV 1106

Query: 1164 NDYLARIK 1171
             D L  IK
Sbjct: 1107 GDVLLDIK 1114


>gi|449440690|ref|XP_004138117.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
 gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase 2 [Cucumis sativus]
          Length = 1117

 Score =  541 bits (1393), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 343/954 (35%), Positives = 507/954 (53%), Gaps = 83/954 (8%)

Query: 247  DDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIR 306
            D D  W+RTT+F+P  ++G+  S+   +                E  +Q   +       
Sbjct: 209  DYDYLWVRTTEFSPMRSVGQSTSFCWEV----------------EEDLQASDIFSCFPFY 252

Query: 307  EEPDFEVPMSD-PFFCIHYE----------EGISFEIMFLVNAVMHKGIINQHQLSDSFF 355
            +E   ++ + D   FC   E            +++E+ + +N+++H   I+    +    
Sbjct: 253  KETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQKISLSAANQDLI 312

Query: 356  DLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQ---IDDIVE 412
            D L     +  +  L+ ++  K+  +D    LK       ++ +      Q    ++++ 
Sbjct: 313  DFLCTLDIDTALNVLQRLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPPSSQKRLSNNVMN 372

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
              R+++TP++ YCL PE+E SN V++ +   A  F+RVTF++E    + A  ++     I
Sbjct: 373  CYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGAVT---TSI 429

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
             R I    +  +T ++ R+ ++L  G  +  ++F FLAFS+SQLR  S W F+       
Sbjct: 430  QRGILSKPY--RTEIYHRIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNLKA 487

Query: 533  LDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG----YVFS 587
             +I++WMG F   ++I+KCAARMGQ FSS+  T+ VP  +V+  +PDI+ N     Y FS
Sbjct: 488  EEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRDVEI-IPDIEVNTDGIDYCFS 546

Query: 588  DGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNK 647
            DGIGKI+   A +VA K    VN  P A+QIRY G KGV+A    +    ++SLR+SM K
Sbjct: 547  DGIGKISLSFARQVADKC--GVNHIPSAFQIRYGGYKGVIAV--DRNSFRKLSLRDSMLK 602

Query: 648  FQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA 707
            F+S +  L +       P +LNR+I TLLSTL V DE F ++Q   L  L +ML D DVA
Sbjct: 603  FESKNKMLNVTKCCDSMPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKDVA 662

Query: 708  FEVL-TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRW 766
              VL     A+  N    ML+ G+ P  EP+L  ML          LR + RIFVP GR 
Sbjct: 663  LNVLENFHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRI 722

Query: 767  LMGCLDELGVLEGGQCF--IQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLH 824
            L+GCLDE G+L  GQ +  I +++  L +    +     ETK   ++ G VV+ KNPCLH
Sbjct: 723  LLGCLDETGILNYGQVYACITLTKSELQSRNQNYFHTIDETK--SILLGKVVVTKNPCLH 780

Query: 825  PGDIRILEAVDHPELHH--LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPS 882
            PGD+R+LEA+ H EL    L DCL+FPQKG RPHTNE SG DLDGDLYF++WDENLIPP 
Sbjct: 781  PGDVRVLEAIFHVELEEKGLVDCLIFPQKGARPHTNECSGGDLDGDLYFISWDENLIPP- 839

Query: 883  KKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDE 942
             K+  PM+Y     + +   V   +I +FF  +M+N+ LG I  AH+VHAD     AL  
Sbjct: 840  -KTEAPMDYTGRRPRIMDHDVKLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSA 898

Query: 943  NCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKD 1002
             C+ LA L + AVDF KTG    MP  LKP+ +PDFM +     Y S+ +LG+LYR +  
Sbjct: 899  KCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAVK 958

Query: 1003 AYDEDIS--VSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVN 1060
            + +++ S  V SE     +   YD DLEV     F+  A   K  Y  +++ L+  Y   
Sbjct: 959  SIEQERSRLVWSEEAARAI---YDYDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYGAE 1015

Query: 1061 REEELVTGHIWSMPKY---NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDE 1117
             E+E++ G + S   Y   ++RK G++K+R+  S   LRKE ++ FE   + C+ L+   
Sbjct: 1016 YEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKNLRKEVKEWFE---NSCDPLNR-- 1070

Query: 1118 KNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
                    ASAWY VTYHP + K+ +              SF W  +D L  IK
Sbjct: 1071 -----RMMASAWYHVTYHPSYFKEDM-----------FYFSFPWAVSDVLLNIK 1108


>gi|297809335|ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
 gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
          Length = 1134

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 357/990 (36%), Positives = 520/990 (52%), Gaps = 89/990 (8%)

Query: 217  AILLQLASSPRVWYRTADDDILVLVPFDML-----DDDDPWIRTTDFTPSGAIGRCNSYR 271
            A LL+L   P+V+ R +   I      D       D D  WIRTTDF+   +IG    + 
Sbjct: 180  AFLLKLKYGPKVFKRVSGPHIATKFKSDRYQFCKEDFDFMWIRTTDFSGLKSIGTSTCFC 239

Query: 272  ISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFE-----VPMSDPFFCIHYEE 326
            + +   H G  + +  + G    + ++LS  +T  +  +F      VP+ +         
Sbjct: 240  LEV---HNGS-TMLDVFSGLPYYREETLS--LTFVDGKNFASVSQIVPLLNAAIL----- 288

Query: 327  GISF--EIMFLVNAVMHKGIINQHQLSD-SFFDLLRGQSREVNVAALKHIYSYKW----P 379
            G+ F  EI+F +NA++H   I+    S+    ++ RG S E  +  LK ++        P
Sbjct: 289  GLEFPYEILFQLNALVHAQKISLFAASNMELINIFRGLSLETTLVILKKLHQQSSICYDP 348

Query: 380  VFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRK 439
            +F    +++ V + +   P          +I+  +R  +TP+K Y L PE+E +N V++ 
Sbjct: 349  LFFVKTQMQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKN 408

Query: 440  YKDLADRFLRVTFMDEGLQTMNANVLS------YFIAPIVRDITLNSFSQKTRVFKRVRS 493
            + +    F+RVTF++E    + AN L+      YF+ P            +T ++ RV S
Sbjct: 409  FAEHVSDFMRVTFVEEDWSKLPANALTVNSKEGYFVKPF-----------RTNIYNRVLS 457

Query: 494  ILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAA 552
            IL  G  +  ++F FLAFS+SQLR  S W F+ + K    DI++WMG F   ++I+KCAA
Sbjct: 458  ILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKIKAEDIREWMGCFRKIRSISKCAA 517

Query: 553  RMGQCFSSTYATVEVPPTEVDPELPDIKRNG----YVFSDGIGKITPDLAMEVAQKLKLD 608
            RMGQ FS++  T+ V   +V+ ++PDI+       Y FSDGIGKI+   A +VAQK  L 
Sbjct: 518  RMGQLFSASRQTLNVRAQDVE-QIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL- 575

Query: 609  VNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFL 668
             +  P A+QIRY G KGV+A    +    +MSLR+SM KF S++  L +  WT   P FL
Sbjct: 576  -SHVPSAFQIRYGGYKGVIAV--DRSSFRKMSLRDSMLKFDSNNRMLNVTRWTESMPCFL 632

Query: 669  NRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQG-NTAAIMLS 727
            NR+II LLSTL + D +F +MQ   LS L  ML D D A  VL     E   N    ML 
Sbjct: 633  NREIICLLSTLGIEDAVFEAMQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLL 692

Query: 728  AGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVS 787
             G+ P +EP+L  ML     +QL  L+ + RI VP GR L+GC+DE+G+LE GQ F++V+
Sbjct: 693  QGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVFVRVT 752

Query: 788  EPFLGNCFSKHGSRFAET-KKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHH--LYD 844
                    S+  S F +  ++  V+ G VV+ KNPCLHPGDIR+L+A+           D
Sbjct: 753  LT-KAELKSREQSYFHKIDEETSVVIGKVVVTKNPCLHPGDIRVLDAIYEVNFEEKGFLD 811

Query: 845  CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVD 904
            C++FPQKG+RPH NE SG DLDGD +FV+WDE LIP      PPM+Y  +  + +   V 
Sbjct: 812  CIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKLIPSQMD--PPMDYAGSRPRIMDHDVT 869

Query: 905  QRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIV 964
              +I +FF  +M+++ LG I  AH+VHAD     A  + C+ LA L + AVDF KTG   
Sbjct: 870  LEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPA 929

Query: 965  TMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYD 1024
             MP  LKP+ +PDF+ +    +Y S  + G+LYR  + +  +     +E D     + YD
Sbjct: 930  EMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVRSSLAQR-KPEAESDGT---LTYD 985

Query: 1025 TDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKY---NSRKQ 1081
              LE      FI  A   +  Y  +L  L+  Y    EEE++TG + +   Y   ++R+ 
Sbjct: 986  ATLEEAGFESFIETAKAHRDMYAEKLTSLMIYYGAVNEEEILTGILKTKEMYLARDNRRY 1045

Query: 1082 GELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKK 1141
            G++K+R+  S   L KE    F+K    CE   E +K  L    ASAWY VTY+P    +
Sbjct: 1046 GDMKDRITLSVKDLHKEAMGWFDK---SCE--DEQQKKKL----ASAWYYVTYNPSHRDE 1096

Query: 1142 SLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
             L             LSF WI  D L  IK
Sbjct: 1097 KL-----------TFLSFPWIVGDVLLDIK 1115


>gi|115437172|ref|NP_001043229.1| Os01g0527600 [Oryza sativa Japonica Group]
 gi|113532760|dbj|BAF05143.1| Os01g0527600, partial [Oryza sativa Japonica Group]
          Length = 385

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 258/387 (66%), Positives = 299/387 (77%), Gaps = 2/387 (0%)

Query: 811  IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
            I G VVIAKNPCLHPGD+RILEAVD PELHHL DCLVFPQKG+RPH NEASGSDLDGDLY
Sbjct: 1    ILGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLY 60

Query: 871  FVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVV 930
            FVTWDE LIPP KKSW PM+Y+  EAK L R V Q DII+FF K+M++ENLG ICNAHVV
Sbjct: 61   FVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVV 120

Query: 931  HADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSN 990
            HAD SEYGA+DE CI LAELAATAVDFPKTGK+  MP HLKPK+YPDFMGKE  QSYKS 
Sbjct: 121  HADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSE 180

Query: 991  KILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQL 1050
            KILGRLYR  ++A + D+ VS EV   P D+ YD DLEVP + DF+A AW  KCSYD QL
Sbjct: 181  KILGRLYRSIQEASNGDV-VSQEV-CTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQL 238

Query: 1051 NGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDC 1110
            + LL QY+V  E ELVTGHI  + K +S+KQG++K+RLK +YSALRKEF+  FE + SD 
Sbjct: 239  SALLSQYRVRTEAELVTGHITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQ 298

Query: 1111 ELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARI 1170
              + +DEKN L+E KASAWYQVTYHP+WV+KS  +   D       LSFAWI  DYLARI
Sbjct: 299  CEIGDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARI 358

Query: 1171 KIRCREMANIDTSKPVNYLARYVADRI 1197
            K+RC     ++  KPV  LA Y+++RI
Sbjct: 359  KLRCHGKVRVEGQKPVERLAAYISERI 385


>gi|225457089|ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
 gi|297733815|emb|CBI15062.3| unnamed protein product [Vitis vinifera]
          Length = 1127

 Score =  521 bits (1341), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 342/989 (34%), Positives = 523/989 (52%), Gaps = 88/989 (8%)

Query: 217  AILLQLASSPRVWYRTADDDILVLVPFDML-----DDDDPWIRTTDFTPSGAIGRCNSY- 270
            A+LL+L  +P+++ + A  +I      D       D +  W+RTTDF+   ++G+  S+ 
Sbjct: 174  ALLLKLKYAPKIFQKFAGPNIASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSFC 233

Query: 271  ----------RISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFF 320
                       I  S  +   L+++    GE       L             VP+     
Sbjct: 234  WEIKEGFPALDIFASFPYYKDLTELTLEQGEGFCSDSGL-------------VPL----- 275

Query: 321  CIHYEEG--ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKW 378
             +  E G  +++EI+F +N+++H   I+   +     ++L     +  +  L+ ++  K 
Sbjct: 276  -VKCESGPKLAYEILFQLNSLVHAQKISLAAVDTDLIEILSNLPVDTAIMILQKLHKRKS 334

Query: 379  PVFDACKRLK----LVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSN 434
              +D    +K    ++   +   P         ++++   R+++TP+K YCL PE+E SN
Sbjct: 335  TRYDPISFIKAQAHIINMNIKNLPPSSHSRLTNNNVMSCHRVLVTPSKIYCLGPELESSN 394

Query: 435  RVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSI 494
             V++ Y   A  F+RV+F++E    + +N LS     I +    + F  +T ++ R+ SI
Sbjct: 395  YVVKHYAAYASDFVRVSFVEEDWSKLPSNALSM---SIRKAFFADPF--RTEIYHRILSI 449

Query: 495  LSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAAR 553
            L  G  +  ++F FLAFS+SQLR  S W F+ + K  V DI++WMG F   ++++KCAAR
Sbjct: 450  LREGIVIGAKRFQFLAFSASQLRSNSVWMFASNDKVRVDDIREWMGCFKKIRSVSKCAAR 509

Query: 554  MGQCFSSTYATVEVPPTEVDPELPDIKRN----GYVFSDGIGKITPDLAMEVAQKLKLDV 609
            MGQ FSS+  T+ VP  +V+  +PDI+      GY FSDGIGKI+   A +VAQK  L  
Sbjct: 510  MGQLFSSSVQTLPVPVQDVEV-IPDIEVTSDGFGYCFSDGIGKISLSFAKQVAQKCGL-- 566

Query: 610  NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLN 669
            +  P A+QIRY G KGV+A    +    ++SLR SM KF+S +  L +  W+   P +LN
Sbjct: 567  HQTPSAFQIRYGGYKGVIAV--DRNSFRKLSLRSSMLKFESQNRMLNVTKWSESTPCYLN 624

Query: 670  RQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL-TAACAEQGNTAAIMLSA 728
            R+I++LLSTL V DE F ++ +  +  L++ML +   A +VL +    +  N  A ML  
Sbjct: 625  REIVSLLSTLGVEDENFEALLNEQMHLLDKMLTNRQAALDVLESMGGIDNKNILAKMLLQ 684

Query: 729  GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSE 788
            G+ P  EP+L  ML   R +QL  +R + RIFVP  R L+GCLDE G+L  GQ +++V+ 
Sbjct: 685  GYEPNVEPYLSMMLQAYRESQLSDIRTRCRIFVPKARVLIGCLDETGILNYGQVYVRVTM 744

Query: 789  PFLGNCFSKHGSRFAETK-KLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHH--LYDC 845
                    ++ S F +      V+ G V++ KNPCLHPGDIR+L+AV   EL    L DC
Sbjct: 745  T-KAEHKCRNQSFFQKVDDTTSVVIGKVIVTKNPCLHPGDIRVLDAVYEVELEEKGLVDC 803

Query: 846  LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQ 905
            ++FPQKG+RPH NE SG DLDGD +F+ WDE LIP   ++  PM+Y +   + +   V  
Sbjct: 804  ILFPQKGERPHPNECSGGDLDGDQFFICWDEGLIPSQTEA--PMDYTSRRPRIMDHDVTL 861

Query: 906  RDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT 965
             +I +FF  +M+N+ LG I  AH+VHAD     A  + C+ LA L + AVDF KTG    
Sbjct: 862  EEIQKFFVDYMINDTLGVISTAHLVHADREPEKARSKKCLELATLHSMAVDFAKTGAPAE 921

Query: 966  MPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDT 1025
            MP  LKPK +PDFM +     Y SN  LG+LYR +  +   + S        P    YD 
Sbjct: 922  MPRVLKPKEFPDFMERVDKPMYISNGALGKLYRATIASRVNEKSSFVWSGTIP-GAAYDH 980

Query: 1026 DLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKY---NSRKQG 1082
            DLEV     F+  A   K  Y  ++  L+  Y    E+E++TG++ +   Y   ++R+  
Sbjct: 981  DLEVDGFETFLEIAKLHKEMYAEKMATLMNFYGAESEDEMLTGNLRNKLMYLQRDNRRFT 1040

Query: 1083 ELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKS 1142
            E+K+R+  S  +L+KE +          E L    K    ++ ASAWY VTYH  +    
Sbjct: 1041 EMKDRILISVKSLQKEAK----------EWLYGSCKPHQHQKMASAWYHVTYHSTF---- 1086

Query: 1143 LDLQEQDSARSVVLLSFAWIANDYLARIK 1171
                   S+++   LSF WI  + L  IK
Sbjct: 1087 -------SSQTPNFLSFPWIVGEVLLVIK 1108


>gi|51989474|gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
          Length = 1120

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 345/998 (34%), Positives = 525/998 (52%), Gaps = 101/998 (10%)

Query: 216  VAILLQLASSPRVWYRTADDDILVLVPFDML-----DDDDPWIRTTDFTPSGAIGRCNS- 269
             A+LL+L  +P+++ R +   +      D       D +  W+RTTDF+   +IG C+S 
Sbjct: 175  TALLLKLKHAPKLYQRVSGPGVASKFSSDRYHVCEEDCEFLWVRTTDFSAMKSIG-CSSS 233

Query: 270  --YRISISSRHRGKL-------SKVITYLGERRVQVDSLSRPITIREEP-DFEVPMSDPF 319
              + I         L       + V+  + +    + S S  + +   P D ++P     
Sbjct: 234  PCWEIEDGLLSSDLLSGLPYCNNDVMDLVLDEVGDIYSASELVPLASFPSDLKLP----- 288

Query: 320  FCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWP 379
                      +EI+F +N+++H   I+   +     ++L     +  +  L+ ++  +  
Sbjct: 289  ----------YEILFQLNSLIHTHKISLGAVKTDLIEVLSKLELDTAMMILQKMHKLQST 338

Query: 380  VFDAC----KRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNR 435
             F+       RL ++ +     P          +++ V R+++TP+K YCL PE+E SN 
Sbjct: 339  CFEPVPFIKTRLHVLGKNSKNQPSSSYSRLVNQNMMSVHRVLVTPSKVYCLGPELETSNY 398

Query: 436  VLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQ--KTRVFKRVRS 493
            +++ +   A  FLRVTF++E    ++ N +S  +   +       F++  +T+++ R+ S
Sbjct: 399  IVKNFALHASDFLRVTFVEEDWGKLSPNAISMSVEQGI-------FAKPYRTKIYHRILS 451

Query: 494  ILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAA 552
            IL  G  +  ++F FLAFS+SQLR  S W F+ +      DI++WMG F   ++++KCAA
Sbjct: 452  ILRDGLVIGSKRFLFLAFSASQLRSNSVWMFASNEHVKAEDIREWMGCFNKIRSVSKCAA 511

Query: 553  RMGQCFSSTYATVEVPPTEVDPELPDIKRNG----YVFSDGIGKITPDLAMEVAQKLKLD 608
            RMGQ FS+++ T+EV    V+  LPDI+       Y FSDGIGKI+   A +VAQK  L 
Sbjct: 512  RMGQLFSTSFQTMEVQSPHVEI-LPDIEVTSDGVSYCFSDGIGKISQAFASQVAQKCGLS 570

Query: 609  VNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFL 668
              P   A+QIRY G KGV+A    +    ++SLR SM KF+S +  L I  W+   P +L
Sbjct: 571  YTPS--AFQIRYGGYKGVIAV--DRNSFRKLSLRGSMLKFESKNRMLNITKWSDAMPCYL 626

Query: 669  NRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI---M 725
            NR+I+ LLSTL V D++F  + D+ L  L +ML  ++ A +VL +     G+   I   M
Sbjct: 627  NREIVILLSTLGVEDKVFEDLLDNHLHLLGKMLTTNEAALDVLESIGG--GDVKKILMRM 684

Query: 726  LSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCF-- 783
            L  G+ P  EP+L  ML      QL  LR + RIF+  GR L+GCLDE G+L  GQ +  
Sbjct: 685  LHQGYAPNLEPYLSMMLQSHFENQLSDLRSRCRIFIHKGRVLVGCLDETGILNYGQVYAR 744

Query: 784  IQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHH-- 841
            I +++  L +       +  ET    V++G VV+ KNPCLHPGD+R+LEAV    L    
Sbjct: 745  ITMTKAELQSAQQSFFQKVDETTA--VVRGNVVVTKNPCLHPGDVRVLEAVYEVALEEKA 802

Query: 842  LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR 901
              DC++FPQKG+RPH NE SG DLDGDLYF++WDENLIP  +++  PM+Y     + +  
Sbjct: 803  WVDCIIFPQKGERPHPNECSGGDLDGDLYFISWDENLIP--RQTVTPMDYTGRRTRIMDH 860

Query: 902  PVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
             V  ++I  FF  +M+++ LG I  AH+VHAD     AL+  C+ LA L + AVDF KTG
Sbjct: 861  EVTLQEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNPKCLQLATLHSMAVDFAKTG 920

Query: 962  KIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVD----IN 1017
                MP  LKP+ +PDF+ +     Y S  +LG+LYR   ++     SV S  D    + 
Sbjct: 921  AAAEMPRFLKPREFPDFLERWDKPMYISEGVLGKLYRAIVNS-----SVRSNSDDLGSVR 975

Query: 1018 PVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKY- 1076
             +   YD  L       FI  A N K +Y  ++N LL  Y   +E E++TG++     Y 
Sbjct: 976  AIQDAYDHALLFDGYEAFIETAKNHKETYLDRMNSLLNYYGAEKEVEILTGNLRQKSVYL 1035

Query: 1077 --NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTY 1134
              ++R+  ELK+R+  S  +L+KE +  F    + C    EDE   L    ASAWY VTY
Sbjct: 1036 QRDNRRYFELKDRILVSAKSLQKEVKGWF----TGC--CKEDEHKKL----ASAWYHVTY 1085

Query: 1135 HPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKI 1172
            HP + + S +            L F W+  D L  IK+
Sbjct: 1086 HPSYCEGSAN-----------CLGFPWVVGDILLDIKL 1112


>gi|113205403|gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
          Length = 1050

 Score =  500 bits (1288), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 374/1078 (34%), Positives = 535/1078 (49%), Gaps = 166/1078 (15%)

Query: 206  LVKQY-SEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSG-- 262
            +VK++ S F    +  +L  +PR++ R  +        F     DD W+RTTDF PS   
Sbjct: 1    MVKEHLSVFQIYNLGGRLFGAPRIYKRLENS----CYSFFKETPDDQWVRTTDFAPSWIG 56

Query: 263  -AIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFC 321
             +   C  +R  +   H     +   +  ER   +   +       +    VP   P   
Sbjct: 57   LSSSLCLQFRRGV---HLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQP--- 110

Query: 322  IHYEEGIS--FEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNV--AALKHIYSYK 377
                EGI+  ++I+F +++++  G I    L+  FF L+  Q R V     AL+ +Y  K
Sbjct: 111  ---PEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQRRNVACIEQALEKLYYLK 167

Query: 378  WPVFDACKRLKLVQEWLLKDPELYKGPK-QIDD-IVEVRRLVITPTKAYCLPPEVELSNR 435
               +D  + L    +  LK  +  K P   +DD +V VRR+++TP K Y   PEV +SNR
Sbjct: 168  ECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNR 227

Query: 436  VLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSIL 495
            VLR Y +  D FLRV+F+DE  + + +  L      + +  T N    +T +++R+ S L
Sbjct: 228  VLRNYSEDIDNFLRVSFVDEEWEKLYSTEL------LPKASTGNGI--RTNIYERILSTL 279

Query: 496  SGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARM 554
              GF +  +KF FLAFSSSQLRD S W F+     +  DI+ WMG F+  KN+AK AAR+
Sbjct: 280  RKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARL 339

Query: 555  GQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQKLKLDVNPP 612
            GQ F S+  T+ V   E++  +PD+K +G  YVFSDGIGKI+ D A  VA K  L   P 
Sbjct: 340  GQSFGSSTETLSVLRHEIE-VIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQYTP- 397

Query: 613  PCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQI 672
              A+QIRY G KGVVA  P     +++SLR+SM+K++S +  L++  W+++QP FLNRQ+
Sbjct: 398  -SAFQIRYGGYKGVVAVDPYSS--MKLSLRKSMSKYESDNNKLDVLGWSKYQPCFLNRQL 454

Query: 673  ITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT-AACAEQGNTAAIMLSAGFN 731
            ITLLSTL V D++    Q   + +L+ +L DS  A E L   +  E  N    ML+ G+ 
Sbjct: 455  ITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYM 514

Query: 732  PQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFL 791
            P  EP L  ML   RA++L  LR K+RIF+P GR +MGCLDE   LE GQ F+Q    F 
Sbjct: 515  PDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQ----FT 570

Query: 792  GNC---FSKHGSRFAETKKLQ---VIKGFVVIAKN----------------PCLHPG--- 826
            G     FS+    F  ++      ++KG VV+AKN                P LH     
Sbjct: 571  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVNVPALHHMVDC 630

Query: 827  -----------------DIRILEAVDHPELHHLYDC--------------------LVFP 849
                             +I  L A    +L  LY C                       P
Sbjct: 631  VVFPQKGKRRLYSNLWVEIIFLLATQLFQLVTLYKCSRLGMYFYCLPTSEVEVKSAYTLP 690

Query: 850  QKGDR------PHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPV 903
                       PH NE SGSDLDGD+YFV WD ++IPP +    PMEY  A +  L   V
Sbjct: 691  SSDSTLWYLTGPHPNECSGSDLDGDIYFVCWDPDMIPPRQVQ--PMEYPPAPSIQLDHDV 748

Query: 904  D-------------------------QRDIIEFFAKHMVNENLGTICNAHVVHADHSEYG 938
                                       +++ E+F  ++VN++LG I NAHVV AD     
Sbjct: 749  TIERGDWPVCATTVQVLRNSFSPVCLLQEVEEYFTNYIVNDSLGIISNAHVVFADREPDM 808

Query: 939  ALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQ-SYKSNKILGRLY 997
            A+ + C  LAEL + AVDFPKTG    +P+ L+PK YPDFM K   + +Y S +++G+L+
Sbjct: 809  AMSDPCKKLAELCSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLF 868

Query: 998  RQSKDAYDEDISVSSEVDINPVDI---HYDTDLEVPESVDFIADAWNQKCSYDGQLNGLL 1054
            R+ KD   +    +S   I   D+    YD DLEV    D+I +A++ K  YD +L  L+
Sbjct: 869  RKVKDKAPQ----ASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLM 924

Query: 1055 EQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLS 1114
            E Y +  E E+++G I    K   R++    E +  +  ALRKE R  F++ +   ++L 
Sbjct: 925  EYYGIKTEAEILSGGIMKTSKTFDRRKD--AEAISIAVRALRKEARTWFKRRNDIDDMLP 982

Query: 1115 EDEKNALFERKASAWYQVTYHPE-WVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
                      KASAWY VTYHP  W   +  L+          +SF W   D L +IK
Sbjct: 983  ----------KASAWYHVTYHPTYWGCYNQGLKRDH------FISFPWCVYDQLIQIK 1024


>gi|125541045|gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indica Group]
          Length = 1067

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 380/1114 (34%), Positives = 545/1114 (48%), Gaps = 134/1114 (12%)

Query: 78   HAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGRTSTPFKLPDVCV 137
            +A V F    + +   +AA R  L      LKV     +   +  R R S  FKL DV +
Sbjct: 51   YAIVQFQTEEHASLVKNAAQRKILRRGHYYLKVHPSDRD---IVPRPRVSM-FKLEDVTL 106

Query: 138  EIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFKV 197
              G L+        W       +F  +           + I F L+        K E   
Sbjct: 107  HFGCLLKETILSALWSRTGVSVEFGFN----------LKKIYFYLQLPNSSIEYKLELSY 156

Query: 198  EFLVREINLV---KQYSEFSCVAILLQLASSPRVWYRTAD-DDILVLVP-FDMLDD--DD 250
            E  + EI L    K  ++F    +L+Q+ ++P+++ +T     ++   P F+   D  DD
Sbjct: 157  E-SIWEIQLQRPPKSQTKF----LLIQVQAAPKIYEQTPRRSGVMYEDPLFNYFRDHTDD 211

Query: 251  PWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKV---ITYLGERRVQVDSLSRPITIRE 307
             W RTTDFT S +IG+  SY + +    R  L  +     Y  E     +  S       
Sbjct: 212  QWTRTTDFTSSSSIGQ--SYILCLEVPRRCDLPNIRDYFFYYHEYNHDFECRSGGYPYSS 269

Query: 308  EPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVN- 366
            +  F VP+      +     + +EI+F +N ++  G ++   + DSFF L+      ++ 
Sbjct: 270  DTRF-VPI------VKSRGYVPYEILFKINHLVQNGTLSGPTVDDSFFRLVSPAFVPIDH 322

Query: 367  -VAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPK-QIDD-IVEVRRLVITPTKA 423
               AL+ +   K    +    L        +   +   P   +DD +V V R+ +TP K 
Sbjct: 323  IKRALEMMSYLKKTCLNPTSWLSEQYSKFRRSRYVQPSPNISLDDGLVYVYRVQVTPAKV 382

Query: 424  YCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQ 483
            Y   PE+ +SNRV+R +    + FLR++F+DE  + + A  LS   A           + 
Sbjct: 383  YFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSAS-------GHDAN 435

Query: 484  KTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFT 543
            +T ++KRV  +LS G  + G+ F FLAFSSSQLRD SAW F+     +  DI+ WMG F 
Sbjct: 436  RTALYKRVLLVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFR 495

Query: 544  D-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKITPDLAME 600
            + +N+AK AAR+GQ FSS+  T++V   EV+ E+ DIK NG  +VFSDGIGKI+   A E
Sbjct: 496  NIRNVAKYAARLGQSFSSSTETLKVQKYEVE-EISDIK-NGTQHVFSDGIGKISSAFANE 553

Query: 601  VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSW 660
            VA K  L     P A+QIRY G KGVVA  P      ++SLR+SM KFQS + T+++ ++
Sbjct: 554  VAMKCNLK-RFAPSAFQIRYGGYKGVVAVDPTSR--WKLSLRKSMLKFQSDNITVDVLAY 610

Query: 661  TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT-AACAEQG 719
            +++QPGFLNRQ+ITLLSTL V D +F   Q+  +++LN+M+ D   A E +      E  
Sbjct: 611  SKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEIT 670

Query: 720  NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG 779
            N    +L  G+ P  EP+L  +L   RA++L  L+ K+RI +P GR +MGCLDE   L  
Sbjct: 671  NAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTL-- 728

Query: 780  GQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
                             K+G  F                         IR    V+    
Sbjct: 729  -----------------KYGQVF-------------------------IRATSGVN---- 742

Query: 840  HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL 899
                         DRPH NE SGSDLDGD+YFV+WD +LIPP  +   PM+Y  A  +TL
Sbjct: 743  -----------DNDRPHPNECSGSDLDGDIYFVSWDPSLIPP--RMVTPMDYTPAPTETL 789

Query: 900  TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
               V   ++ E+F  ++VNE+LG I NAHVV AD  +  A    CI LA+L + AVDFPK
Sbjct: 790  DHDVTIEEVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPK 849

Query: 960  TGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPV 1019
            TG    +P  L  K YPDFM K    +Y+S  ++G+LYR+ K         + EV     
Sbjct: 850  TGVPALIPPELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIKHFTREV----A 905

Query: 1020 DIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSR 1079
               YDTD+ V    D+I +A   K  YD +L  L++ Y +  E E+++G I  M K  ++
Sbjct: 906  RRSYDTDMIVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTK 965

Query: 1080 KQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWV 1139
            K      RL  +  +LRKE R  F +M  D      D   A    KASAWY VTYHPE+ 
Sbjct: 966  KSDADAIRL--AVRSLRKEARSRFSEMSLDDNGHGHDASEA----KASAWYHVTYHPEFW 1019

Query: 1140 KKSLDLQEQDSARSVVLLSFAWIANDYLARIKIR 1173
                +  E+        +SF W   + L RIK R
Sbjct: 1020 GCYNEGYERPH-----FISFPWCIYEKLLRIKQR 1048


>gi|222623633|gb|EEE57765.1| hypothetical protein OsJ_08301 [Oryza sativa Japonica Group]
          Length = 1027

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 373/1110 (33%), Positives = 536/1110 (48%), Gaps = 166/1110 (14%)

Query: 78   HAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGRTSTPFKLPDVCV 137
            +A V F    + +   +AA R  L      LKV     +   +  R R S  FKL DV +
Sbjct: 51   YAIVQFQTEEHASLVKNAAQRKILRRGHYYLKVHPSDRD---IVPRPRVSM-FKLEDVTL 106

Query: 138  EIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFKV 197
              G L+        W       +F  +           + I F L+        K E   
Sbjct: 107  HFGCLLKETILSALWSRKGVSVEFGFN----------LKKIYFYLQLPNSSIEYKLELSH 156

Query: 198  EFLVREINLV---KQYSEFSCVAILLQLASSPRVWYRTAD-DDILVLVP-FDMLDD--DD 250
            E  + EI L    K  ++F    +L+Q+ ++P+++ +T     ++   P F+   D  DD
Sbjct: 157  E-SIWEIQLQRPPKSQTKF----LLIQVQAAPKIYEQTPRRSGVMYEDPLFNYFRDHTDD 211

Query: 251  PWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKV---ITYLGERRVQVDSLSRPITIRE 307
             W RTTDFT S +IG+  SY + +    R  L  +     Y  E     +  S       
Sbjct: 212  QWTRTTDFTSSSSIGQ--SYILCLEVPRRCDLPNIRDYFFYYHEYNHDFECRSGGYPYSS 269

Query: 308  EPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNV 367
            +  F VP+      +     + +EI+F +N ++  G ++   + DSFF L+         
Sbjct: 270  DTRF-VPI------VKSRGYVPYEILFKINHLVQNGTLSGPTVDDSFFRLVS-------- 314

Query: 368  AALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLP 427
                       P F     +K                + ++ +  +++  + PT  Y   
Sbjct: 315  -----------PAFVPIDHIK----------------RALEMMSYLKKTCLNPT-MYFYG 346

Query: 428  PEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRV 487
            PE+ +SNRV+R +    + FLR++F+DE  + + A  LS   A           + +T +
Sbjct: 347  PEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSAS-------GHDANRTAL 399

Query: 488  FKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KN 546
            +KRV S+LS G  + G+ F FLAFSSSQLRD SAW F+     +  DI+ WMG F + +N
Sbjct: 400  YKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRN 459

Query: 547  IAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQK 604
            +AK AAR+GQ FSS+  T++V   EV+ E+ DIK NG  +VFSDGIGKI+   A EVA K
Sbjct: 460  VAKYAARLGQSFSSSTETLKVQKYEVE-EISDIK-NGTQHVFSDGIGKISSAFANEVAMK 517

Query: 605  LKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQ 664
              L     P A+QIRY G KGVVA  P      ++SLR+SM KFQS + T+++ +++++Q
Sbjct: 518  CNLK-RFAPSAFQIRYGGYKGVVAVDPTSR--WKLSLRKSMLKFQSDNITVDVLAYSKYQ 574

Query: 665  PGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT-AACAEQGNTAA 723
            PGFLNRQ+ITLLSTL V D +F   Q+  +++LN+M+ D   A E +      E  N   
Sbjct: 575  PGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVK 634

Query: 724  IMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCF 783
             +L  G+ P  EP+L  +L   RA++L  L+ K+RI +P GR +MGCLDE   L      
Sbjct: 635  ELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTL------ 688

Query: 784  IQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLY 843
                         K+G  F                         IR    V+        
Sbjct: 689  -------------KYGQVF-------------------------IRATSGVN-------- 702

Query: 844  DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPV 903
                     DRPH NE SGSDLDGD+YFV+WD +LIPP  +   PM+Y  A  +TL   V
Sbjct: 703  -------DNDRPHPNECSGSDLDGDIYFVSWDPSLIPP--RMVTPMDYTPAPTETLDHDV 753

Query: 904  DQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKI 963
               ++ E+F  ++VNE+LG I NAHVV AD  +  A    CI LA+L + AVDFPKTG  
Sbjct: 754  TIEEVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVP 813

Query: 964  VTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHY 1023
              +P  L  K YPDFM K    +Y+S  ++G+LYR+ K         + EV        Y
Sbjct: 814  ALIPPELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIKHFTREV----ARRSY 869

Query: 1024 DTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGE 1083
            DTD+ V    D+I +A   K  YD +L  L++ Y +  E E+++G I  M K  ++K   
Sbjct: 870  DTDMIVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDA 929

Query: 1084 LKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSL 1143
               RL  +  +LRKE R  F +M  D      D   A    KASAWY VTYHPE+     
Sbjct: 930  DAIRL--AVRSLRKEARSRFSEMSLDDNGHGHDASEA----KASAWYHVTYHPEFWGCYN 983

Query: 1144 DLQEQDSARSVVLLSFAWIANDYLARIKIR 1173
            +  E+        +SF W   + L RIK R
Sbjct: 984  EGYERPH-----FISFPWCIYEKLLRIKQR 1008


>gi|260803900|ref|XP_002596827.1| hypothetical protein BRAFLDRAFT_99723 [Branchiostoma floridae]
 gi|229282087|gb|EEN52839.1| hypothetical protein BRAFLDRAFT_99723 [Branchiostoma floridae]
          Length = 1922

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 326/892 (36%), Positives = 474/892 (53%), Gaps = 81/892 (9%)

Query: 330  FEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSRE--VNVAALKHIYSYKWPVFDA-CKR 386
            F + + ++ ++ +G     ++  SFF  L   +R   V  AA  H  +  W   D  C  
Sbjct: 320  FSVTYALHCLLSRGYKVSDRVQPSFFSNLEAAARHDPVATAAALHQVADGWVDGDCFCD- 378

Query: 387  LKLVQEWLLKDPELYK--GPKQIDDI----VEVRRLVITPTKAYCLPPEVELSNRVLRKY 440
               ++E    + E+ +  GP   DD+    V  R++V+TPT+   L PE  + NRV+R+Y
Sbjct: 379  ---LEEAFQTELEVARTTGPNDADDLPDHYVYARKVVVTPTQMLFLKPEPIVENRVVREY 435

Query: 441  KDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFY 500
                D F+RV F DE    + A                N  S K  V  RV+ +L  G  
Sbjct: 436  G--VDNFIRVAFRDEDFNKLTAP---------------NPNSIKC-VTTRVKDVLQRGIR 477

Query: 501  LCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFT-DKNIAKCAARMGQCFS 559
            + GR F +L  S+SQ+R+   W ++ + +T+  DI+ WMG  + ++ +A   +R+GQ FS
Sbjct: 478  IGGRHFEYLGSSNSQMREHGCWMYAAEDETTTSDIRAWMGDLSHERCVATYVSRLGQFFS 537

Query: 560  STYATVEVPPTEVDPELPD---IKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAY 616
            S+   V V   +    L D     +  Y FSDGIGKI+  LA +VA  L   V+P P A+
Sbjct: 538  SSRDAVNVSVEDRSVALIDDVTSSQRRYTFSDGIGKISVPLAEKVAAALG--VSPVPSAF 595

Query: 617  QIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLL 676
            QIRY GCKGV+A  P+ G    + +R SM KF+S H TLE+ S T      LNRQ ITLL
Sbjct: 596  QIRYGGCKGVLAQDPSLGHTDLIHIRGSMKKFESEHKTLEVTSVTTPGSLSLNRQAITLL 655

Query: 677  STLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEP 736
            S L VPDE F+ +Q+ +L++L +ML+    A + L+ A    G     + ++  +  TEP
Sbjct: 656  SGLGVPDEEFFKLQERVLNQLAEMLLLDGAAVKALSGARV--GINFQALHNSRISLTTEP 713

Query: 737  HLRGMLTCIRAAQLWGLREKARIFVPAG--RWLMGCLDELGVLEGGQCFIQVSEPFLGNC 794
              R ML  +   Q+  L  + RI +PAG  R +MG +DE G L+ GQ F+Q         
Sbjct: 714  FFRSMLLAVYRNQMGELLRRTRIQLPAGEGRIMMGTMDETGKLQYGQVFLQ--------- 764

Query: 795  FSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDR 854
            +S+   R  + +K+ V +G V + KNPC HPGD+R   AVD PEL H+ DC+VFP +G R
Sbjct: 765  YSRETDR-PQAEKI-VHQGQVTVTKNPCFHPGDMRKFTAVDVPELRHMVDCIVFPSRGPR 822

Query: 855  PHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAK 914
            PH +E SGSDLDGD+YFVTW E LI P +++ P M++ A   K L RPV   D+IEFFA+
Sbjct: 823  PHPDEMSGSDLDGDMYFVTWREGLILP-RENIPAMDFTAQPKKVLRRPVQVSDMIEFFAE 881

Query: 915  HMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKL 974
            ++ N+ LG I NAH+VHAD    G   E C+ LA+L + AVDFPKTG+   +   L+P  
Sbjct: 882  YIRNDQLGLIANAHLVHADKETKGIFSERCMELAKLHSDAVDFPKTGQCPELKGDLRPDK 941

Query: 975  YPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVD 1034
            YPDFM K     Y+S KI+G+L+RQ + A D     S +  +    +  D   E  ES  
Sbjct: 942  YPDFMMKSDKPQYRSEKIIGKLFRQCQ-ALDNAQRFSPDPVVEDDGVDQDLIREGFES-- 998

Query: 1035 FIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGE-------LKER 1087
            +  DA  Q   Y+ ++  ++  Y ++ E E+V+G I  + +     + E       ++ R
Sbjct: 999  YTDDAQTQLNIYNTKIRSIMSLYGISSEGEVVSGCILKVKQRLGLLKNERFEVTEYVRAR 1058

Query: 1088 LKHSYSALRKE-FRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQ 1146
             K  +   R E FRQ  EK +S  +   E++      +KASAWY VTY       S D  
Sbjct: 1059 FKTLWRKTRAEFFRQFDEKEESSTDRRREEQL-----KKASAWYMVTY-------SDDYN 1106

Query: 1147 EQDSARSVVLLSFAWIANDYLARIK-----IRCREMANIDTSKPVNYLARYV 1193
             +    S  LLSF W+  D L  +K     +  R++   DT+K V  ++R V
Sbjct: 1107 NKPHGASPKLLSFPWVVYDVLGGLKKSAHGLDPRQVYRKDTNKAVVSISRSV 1158


>gi|142942403|gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 935

 Score =  478 bits (1230), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 313/809 (38%), Positives = 443/809 (54%), Gaps = 70/809 (8%)

Query: 163 VDPFDG-TCKF-CFTRDIAFALKSSTEHAVI---------------KCEFKVEFLVREIN 205
           VD  DG T  F C   D  FA+  STE ++                  ++K++     I 
Sbjct: 92  VDHMDGITLNFGCQISDDKFAVLGSTEVSIKFGIGLKNFFFFLSSGSADYKLQLSYENIW 151

Query: 206 LVKQYSEFSCVA--ILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSG- 262
            V  +  +   A  +L+QL  +PR++ R  +        F     DD W+RTTDFTPS  
Sbjct: 152 QVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS----CYSFFKETPDDQWVRTTDFTPSWI 207

Query: 263 --AIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFF 320
             +   C  +R  +   H     +   +  ER   +   +       +    VP   P  
Sbjct: 208 GLSSSLCLQFRRGV---HLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQP-- 262

Query: 321 CIHYEEGIS--FEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNV--AALKHIYSY 376
                EGI+  ++I+F +++++  G I    L+  FF L+  Q R V     AL+ +Y  
Sbjct: 263 ----PEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYL 318

Query: 377 KWPVFDACKRLKLVQEWLLKDPELYKGPK-QIDD-IVEVRRLVITPTKAYCLPPEVELSN 434
           K   +D  + L    +   K  +  K P   +DD +V VRR+++TP K Y   PEV +SN
Sbjct: 319 KECCYDPVRWLTEQYDGYFKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 378

Query: 435 RVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSI 494
           RVLR Y +  D FLRV+F+DE  + + +  L      + +  T N    +T +++R+ S 
Sbjct: 379 RVLRNYSEDIDNFLRVSFVDEEWEKLYSTEL------LPKASTGNGI--RTNIYERILST 430

Query: 495 LSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAAR 553
           L  GF +  +KF FLAFSSSQLRD S W F+     +  DI+ WMG F+  KN+AK AAR
Sbjct: 431 LRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAKYAAR 490

Query: 554 MGQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQKLKLDVNP 611
            GQ F S+  T+ V   E++  +PD+K +G  YVFSDGIGKI+ D A +VA    L   P
Sbjct: 491 FGQSFGSSRETLSVLRHEIEV-IPDVKVHGTSYVFSDGIGKISADFARKVASNCGLQYTP 549

Query: 612 PPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQ 671
              A+QIRY G KGVVA  P     +++SLR+SM+K++S +  L++  W+++QP +LNRQ
Sbjct: 550 --SAFQIRYGGYKGVVAVDPY--SSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQ 605

Query: 672 IITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL-TAACAEQGNTAAIMLSAGF 730
           ++TLLSTL V D++    Q   + +L+ +L DS  A E L   +  E  N    ML+ G+
Sbjct: 606 LVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGY 665

Query: 731 NPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPF 790
            P  EP L  ML   RA++L  LR K+RIF+P GR +MGCLDE   LE GQ F+Q    F
Sbjct: 666 MPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQ----F 721

Query: 791 LGNC---FSKHGSRFAETKKLQ---VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD 844
            G     FS+    F  ++      ++KG VV+AKNPCLHPGDIR+L AVD P LHH+ D
Sbjct: 722 TGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVD 781

Query: 845 CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVD 904
           C+VFPQKG RPH NE SGSDLDGD+YFV WD+++IPP +     ME+    +  L   V 
Sbjct: 782 CVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQ--AMEFPPPPSIQLDHDVT 839

Query: 905 QRDIIEFFAKHMVNENLGTICNAHVVHAD 933
             ++ E+F  ++VN+ LG I NAHVV AD
Sbjct: 840 IEEVEEYFTNYIVNDGLGIIANAHVVFAD 868


>gi|147853646|emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 278/659 (42%), Positives = 388/659 (58%), Gaps = 41/659 (6%)

Query: 523  FFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK- 580
            F S  G T+  +I+ WMG F+  +N+AK AAR+GQ FSS+  T++V   E++  +PDI+ 
Sbjct: 2    FASRPGLTAA-EIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIE-NIPDIEI 59

Query: 581  ---RNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGI 637
               R  YVFSDGIGKI+P LA  VA K     +  P A+QIRY G KGVVA  P      
Sbjct: 60   HKXRTTYVFSDGIGKISPQLAHRVAIKCGCK-SSTPSAFQIRYGGYKGVVAVDPTSSR-- 116

Query: 638  RMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKL 697
            ++SLR+SM K++S +T L++ +W+++QP FLNRQ+ITLLSTL V D +F   Q + + +L
Sbjct: 117  KLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQL 176

Query: 698  NQMLVDSDVAFEVLT-AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREK 756
            + +L D   A E L   +  E  N    ML  G+ P  EP L  ML   RAA+L  LR K
Sbjct: 177  DTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTK 236

Query: 757  ARIFVPAGRWLMGCLDELGVLEGGQCFIQVS----EPFLGNCFSKHGSRFAETKKLQVIK 812
             RIFVP GR +MGCLDE   LE G+ F+Q+S        G+     GS         +++
Sbjct: 237  TRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGS--GSHHDNFILE 294

Query: 813  GFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFV 872
            G +V+AKNPCLHPGD+R+L AV+ P LHH+ DC+VFPQKG RPH NE SGSDLDGD+YFV
Sbjct: 295  GKIVVAKNPCLHPGDVRVLXAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV 354

Query: 873  TWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHA 932
             WD +LIPP + +  PM+Y          P   +++ E+F  ++VN++LG I NAH V A
Sbjct: 355  CWDRDLIPPQQIN--PMDYT---------PAPTKEVEEYFTNYIVNDSLGIIANAHTVFA 403

Query: 933  DHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKI 992
            D     A  + C  LA+L + AVDFPKTG    +P +L+ K YPDFM K    +Y+S  +
Sbjct: 404  DKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSV 463

Query: 993  LGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNG 1052
            +G+L+R+ KD    + ++ S    +     YD D+EV    D+++DA+  K  YD +L  
Sbjct: 464  IGKLFREVKDIAPHNCNIRS-FTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGN 522

Query: 1053 LLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCEL 1112
            L++ Y +  E E+++G I  M K   R++    E +  +  +LRKE R  F KM S+ + 
Sbjct: 523  LMDYYGIKTESEILSGSIMRMSKSFDRRKD--AEAIGLAVKSLRKEARTWFNKMGSETDS 580

Query: 1113 LSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
             ++D        KASAWY VTYHP++     +  ++D       LSF W   D L   K
Sbjct: 581  EADD-----VYAKASAWYHVTYHPDYWGCYNEGMDRDH-----FLSFPWCVYDKLIHTK 629


>gi|260789117|ref|XP_002589594.1| hypothetical protein BRAFLDRAFT_81564 [Branchiostoma floridae]
 gi|229274774|gb|EEN45605.1| hypothetical protein BRAFLDRAFT_81564 [Branchiostoma floridae]
          Length = 1867

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 307/789 (38%), Positives = 431/789 (54%), Gaps = 82/789 (10%)

Query: 408  DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEG---LQTMNANV 464
            D  V  R++V+TPT+   L PE  + NRV+R+Y    D F+RV F DE    L   N N 
Sbjct: 381  DHYVYARKVVVTPTQMLFLKPEPIVENRVVREYG--VDNFIRVAFRDEDFSKLAVTNPNS 438

Query: 465  LSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF 524
                    +R +T            RV+ +L  G  +  R F +L  S+SQ+R+   W +
Sbjct: 439  --------IRCVT-----------SRVKDVLEKGIRIGERNFKYLGSSNSQMREHGCWMY 479

Query: 525  SEDGKT--SVLDIKKWMGRFT-DKNIAKCAARMGQCFSSTYATVEVPPTEVDPEL-PDIK 580
            +   KT  S  DI+ WMG  + ++ +A   +R+GQ FSS++  V V   +   EL  D++
Sbjct: 480  AAADKTTTSTSDIRGWMGDLSHERCVATYVSRLGQFFSSSWNAVSVSVEDRSVELIADVE 539

Query: 581  RNG--YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR 638
             +   + FSDGIGKI+  LA +VA  L   V+P P A+QIRYAGCKGV+A  P  G+  R
Sbjct: 540  TSSGTHTFSDGIGKISVPLAKKVAAAL--GVSPVPSAFQIRYAGCKGVLAQDPTLGNTDR 597

Query: 639  MSLRESMNKFQSHHTTLEICSWTRFQPGFL--NRQIITLLSTLNVPDEMFWSMQDSMLSK 696
            + +R SM KF+S H TLE+ S T   PG L  NRQ ITLLS LNVPD  F  +Q+ +L++
Sbjct: 598  IQIRGSMKKFESEHKTLEVTSVT--TPGVLSLNRQAITLLSGLNVPDMEFLKLQERVLNQ 655

Query: 697  LNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREK 756
            L +ML+  + A + L+ A    G     +  +G +  TEP  R ML  +   ++  L  +
Sbjct: 656  LAEMLILDEAAVKALSGA--RVGMDIRALHDSGISLTTEPFFRSMLLAVYRNRMGELLRR 713

Query: 757  ARIFVPAG--RWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQ----V 810
             RI +PAG  R +MG +DE G L+ GQ FIQ S                E  K Q    V
Sbjct: 714  TRIEIPAGEGRIMMGTMDETGKLQYGQVFIQYSR---------------EVDKPQADKVV 758

Query: 811  IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
             +G V + KNPC HPGD+R   AVD PEL H+ DC+VFP +G RPH +E SGSDLDGD+Y
Sbjct: 759  HQGQVTVTKNPCFHPGDMRKFTAVDVPELRHMVDCIVFPSRGPRPHPDEMSGSDLDGDMY 818

Query: 871  FVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVV 930
            FVTW E LI P +++ P M++ A   + L RPV + D+IEFFA+++ +  LG I NAH+V
Sbjct: 819  FVTWREGLILP-RENRPAMDFTAQPKRVLHRPVQESDMIEFFAEYIGSNQLGLIANAHLV 877

Query: 931  HADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSN 990
            HAD  + G   + CI LA+L + AVD PKTG+   +   L+P++YPDFM K     Y+S 
Sbjct: 878  HADKEDQGIFSQKCIDLAQLHSDAVDAPKTGQCPELKGDLRPEVYPDFMMKSDKPQYRSE 937

Query: 991  KILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVD-FIADAWNQKCSYDGQ 1049
            +I+GRL+R+ ++  D     S   DI       D DL V E  D +I DA  Q   Y+  
Sbjct: 938  RIIGRLFRKCQE-LDSANQRSGTDDIVYHTSGIDHDL-VREGFDSYIEDAQTQLNIYNNM 995

Query: 1050 LNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGE-------LKERLKHSYSALRKEFRQV 1102
            +  ++  Y +  E E+V+G I  + +     + E       ++ R K  +   R EF + 
Sbjct: 996  MMSIMSLYGITSEGEVVSGCILKVKQRLGLLKNERFEVTEYVRARFKTLWRKTRAEFFKQ 1055

Query: 1103 FEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWI 1162
            F     D E LSE+ +     ++ASAWY VTY   + +K  D        S  LLSF W+
Sbjct: 1056 F-----DVEELSEERRKEEQLKRASAWYMVTYSDAYDEKPHD-------PSPKLLSFPWV 1103

Query: 1163 ANDYLARIK 1171
              D LA +K
Sbjct: 1104 VYDVLASLK 1112


>gi|384245028|gb|EIE18524.1| RdRP-domain-containing protein, partial [Coccomyxa subellipsoidea
            C-169]
          Length = 723

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 295/764 (38%), Positives = 416/764 (54%), Gaps = 74/764 (9%)

Query: 429  EVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVF 488
            +VELSNRV+R ++  +DRFLRVTF +E     N   L +           N   +     
Sbjct: 1    QVELSNRVIRHHRQYSDRFLRVTFCEE-----NGGRLCF----------ANDIPRLEDYM 45

Query: 489  KRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE-DGKTSVLDIKKWMGRF-TDKN 546
             R+  IL  G  L  R F  LAFSS Q+R+ SAWF++  D   +  DI+ WMG F   + 
Sbjct: 46   DRMEGILKDGLELADRHFDLLAFSSGQVREQSAWFWAAPDSGPTAADIRAWMGDFDAIRC 105

Query: 547  IAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLK 606
            +AK  ARMGQCFSST  T+++    V   +PD++RNGY FSDG+G+I+ +L+  VA +L+
Sbjct: 106  VAKFTARMGQCFSSTVDTLKLQAYTVQ-TVPDVERNGYCFSDGVGRISVELSRAVADRLE 164

Query: 607  LDVNPP----PCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTR 662
                 P    P AYQIRYAGCKG+V+       G R  +R SMNKF++    LEIC + R
Sbjct: 165  QLGRCPAGWLPRAYQIRYAGCKGMVSLHMGL-RGKRFEVRPSMNKFEASAQMLEICDYAR 223

Query: 663  FQPGFLNRQIITLL--STLNVPDEMFWSMQD-SMLSKLNQMLVDSDVAFEVLTAACAEQG 719
            + PG+LNRQI+TLL    L VP+ +F  +Q  + L  LN+          ++    A   
Sbjct: 224  YVPGYLNRQIVTLLMQKCLGVPNSVFQRLQARTALFNLNKSGQLRCFCLNLIKWGDAAIM 283

Query: 720  NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG 779
              AA ++ AGF+  TEP+L+ +L C+RA  L  L+ K R+ VP    LMG +DE GVLE 
Sbjct: 284  LEAAHIIRAGFDVGTEPYLKSILLCLRAHLLQDLKAKTRVRVPKAALLMGVMDEEGVLEP 343

Query: 780  GQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEA---VDH 836
            GQ F+ V+                      ++ G VV+AKNPC HPGD+R  +A      
Sbjct: 344  GQVFLSVNS-------------LPTMALPAIVTGTVVVAKNPCFHPGDVRKFQARPLFRS 390

Query: 837  PELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEA 896
            PELHHL +CLVFPQKG RPH +E SGSDLDGD YFV+W+  L+ P      PM +++ + 
Sbjct: 391  PELHHLVNCLVFPQKGQRPHPDECSGSDLDGDQYFVSWEPGLLFPGPNR-EPMSFHSQDP 449

Query: 897  KTLTRPVDQR----DIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAA 952
              +  P  Q     D+ +FF  ++ N+ LG I NAH+  AD    GA    C+ LA L +
Sbjct: 450  VLI--PEGQASLVGDVAQFFMDYIFNDLLGIIANAHLATADIKPDGAQCSQCLQLARLHS 507

Query: 953  TAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDIS-VS 1011
             AVDF K+G+       L+P  YPDFM K+  ++++S+ I+G+L+R         +S ++
Sbjct: 508  NAVDFTKSGRPAEFSRDLRPLSYPDFMMKKNKETHESSTIIGQLFRAITVPTPPLLSDIA 567

Query: 1012 SEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIW 1071
            SE   +P       D+ V     FI  A   +  Y+  L  ++ QY V+ E E+V+G I 
Sbjct: 568  SETQPDP-------DIMVEGFQQFIPAAQEARTRYEHALVQIMNQYGVHNEAEIVSGCIS 620

Query: 1072 SMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQ 1131
               K+  RK+G++K  +  +  ALRK+ R  F         L+   + AL  +KA AWY 
Sbjct: 621  KFAKHR-RKKGDVKTMIIDAVRALRKKNRAEFPGP------LAARSRRAL--QKACAWYH 671

Query: 1132 VTYHPEWV----KKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
            VTY P +       +L  +E D+     L+SF WI  D+LA IK
Sbjct: 672  VTYSPAYSGYGPAAALSTRELDAR----LISFPWILTDHLAVIK 711


>gi|113205325|gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1180

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 300/762 (39%), Positives = 420/762 (55%), Gaps = 70/762 (9%)

Query: 163 VDPFDG-TCKF-CFTRDIAFALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILL 220
           VD  DG T  F C   D  FA+  STE                + L + Y + +   +L+
Sbjct: 92  VDHMDGITLNFGCQISDDKFAVLGSTE----------------VVLHRPYGQ-NAQFLLI 134

Query: 221 QLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSG---AIGRCNSYRISISSR 277
           QL  +PR++ R  +        F     DD W+RTTDF PS    +   C  +R  +   
Sbjct: 135 QLFGAPRIYKRLENS----CYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGV--- 187

Query: 278 HRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFCIHYEEGIS--FEIMFL 335
           H     ++  +  ER   +   +       +    VP   P       EGI+  ++I+F 
Sbjct: 188 HLPNFQEIFFHYTERENNITLQTGFTFFVSQKSALVPNVQP------PEGIAIPYKILFK 241

Query: 336 VNAVMHKGIINQHQLSDSFFDLLRGQSREVNV--AALKHIYSYKWPVFDACKRLKLVQEW 393
           +++++  G I    L   FF L+  Q R V     AL+ +Y  K   +D  + L    + 
Sbjct: 242 ISSLVQHGCIPGPALDVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDG 301

Query: 394 LLKDPELYKGPK-QIDD-IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVT 451
            LK  +  K P   +DD +V VRR+++TP K Y   PEV +SNRVLR Y +  D FLRV+
Sbjct: 302 YLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVS 361

Query: 452 FMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAF 511
           F+DE  + + +  L      + +  T N    +T +++R+ S L  GF +  +KF FLAF
Sbjct: 362 FVDEEWEKLYSTDL------LPKASTGNGI--RTNIYERILSTLRKGFVIGDKKFEFLAF 413

Query: 512 SSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPT 570
           SSSQLRD S W F+     +  DI+ WMG F+  KN+AK AAR+GQ F S+  T+ V   
Sbjct: 414 SSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRH 473

Query: 571 EVDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVA 628
           E++  +PD+K +G  YVFSDGIGKI+ D A  VA K  L   P   A+QIRY G KGVVA
Sbjct: 474 EIE-VIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQYTP--SAFQIRYGGYKGVVA 530

Query: 629 CWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWS 688
             P     +++SLR+SM+K++S +  L++  W+++QP +LNRQ++TLLSTL V D++   
Sbjct: 531 VDPYSS--MKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQ 588

Query: 689 MQDSMLSKLNQMLVDSDVAFEVLT-AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRA 747
            Q   + +L+ +L DS  A E L   +  E  N    ML+ G+ P  EP L  ML   RA
Sbjct: 589 KQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRA 648

Query: 748 AQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNC---FSKHGSRFAE 804
           ++L  LR ++RIF+P GR +MGCLDE   LE GQ F+Q    F G     FS+    F  
Sbjct: 649 SKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQ----FTGAGHREFSEDLHPFNN 704

Query: 805 TKKLQ---VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEAS 861
           ++      ++KG VV+AKNPCLHPGDIR+L AVD P LHH+ DC+VFPQKG RPH NE S
Sbjct: 705 SRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECS 764

Query: 862 GSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPV 903
           GSDLDGD+YFV WD+++IPP +    PMEY  A +  L   V
Sbjct: 765 GSDLDGDIYFVCWDQDMIPPRQVQ--PMEYPPAPSIQLDHDV 804



 Score =  156 bits (395), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 98/270 (36%), Positives = 147/270 (54%), Gaps = 26/270 (9%)

Query: 906  RDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT 965
            +++ E+F  ++VN++LG I NAHVV AD     A+ + C  LAEL + AVDFPKTG    
Sbjct: 907  QEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAE 966

Query: 966  MPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDI---H 1022
            +P+ L+PK YPDFM K    +Y S +++G+L+R+ KD   +    +S + I   D+    
Sbjct: 967  IPSQLRPKEYPDFMDKPDKTTYISERVIGKLFRKVKDKAPQ----ASSIAIFTRDVARRS 1022

Query: 1023 YDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQG 1082
            YD DLEV    D+I +A++ K  YD +L  L++ Y +  E E+++G I    K   R++ 
Sbjct: 1023 YDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKD 1082

Query: 1083 ELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPE-WVKK 1141
               E +  +  ALRKE R  F++ +   ++L           KASAWY VTYHP  W   
Sbjct: 1083 --AEAISVAVRALRKEARTWFKRRNDIDDMLP----------KASAWYHVTYHPTYWGCY 1130

Query: 1142 SLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
            +  L+          +SF W   D L +IK
Sbjct: 1131 NQGLKRDH------FISFPWCVYDQLIQIK 1154


>gi|142942513|gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 841

 Score =  454 bits (1169), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 302/779 (38%), Positives = 426/779 (54%), Gaps = 70/779 (8%)

Query: 163 VDPFDG-TCKF-CFTRDIAFALKSSTEHAVI---------------KCEFKVEFLVREIN 205
           VD  DG T  F C   D  FA+  STE ++                  ++K++     I 
Sbjct: 92  VDHMDGITLNFGCQISDDKFAVLGSTEVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIW 151

Query: 206 LVKQYSEFSCVA--ILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSG- 262
            V  +  +   A  +L+QL  +PR++ R  +        F     DD W+RTTDF PS  
Sbjct: 152 QVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS----CYSFFKETPDDQWVRTTDFAPSWI 207

Query: 263 --AIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFF 320
             +   C  +R  +   H     +   +  ER   +   +       +    VP   P  
Sbjct: 208 GLSSSLCLQFRRGV---HLPNFQESFFHYTERENNITLQTGFTFFVSQKSALVPNVQP-- 262

Query: 321 CIHYEEGIS--FEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNV--AALKHIYSY 376
                EGI+  ++I+F +++++  G I    L+  FF L+  Q R V     AL+ +Y  
Sbjct: 263 ----PEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYL 318

Query: 377 KWPVFDACKRLKLVQEWLLKDPELYKGPK-QIDD-IVEVRRLVITPTKAYCLPPEVELSN 434
           K   +D  + L    +  LK  +  K P   +DD +V VRR+++TP K Y   PEV +SN
Sbjct: 319 KECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 378

Query: 435 RVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSI 494
           RVLR Y +  D FLRV+F+DE  + + +  L      + +  T N    +T +++R+ S 
Sbjct: 379 RVLRNYSEDIDNFLRVSFVDEEWEKLYSTDL------LPKASTGNGI--RTNIYERILST 430

Query: 495 LSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAAR 553
           L  GF +  +KF FLAFSSSQLRD S W F+     +  DI+ WMG F+  KN+AK AAR
Sbjct: 431 LRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAAR 490

Query: 554 MGQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQKLKLDVNP 611
           +GQ F S+  T+ V   E++  +PD+K +G  YVFSDGIGKI+ D A  VA K  L   P
Sbjct: 491 LGQSFGSSKETLSVLRHEIE-VIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQYTP 549

Query: 612 PPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQ 671
              A+QIRY G KGVVA  P     +++SLR+SM+K++S +  L++  W+++QP +LNRQ
Sbjct: 550 --SAFQIRYGGYKGVVAVDPY--SSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQ 605

Query: 672 IITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL-TAACAEQGNTAAIMLSAGF 730
           ++TLLSTL V D++    Q   + +L+ +L DS  A E L   +  E  N    ML+ G+
Sbjct: 606 LVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGY 665

Query: 731 NPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPF 790
            P  EP L  ML   RA++L  LR ++RIF+P GR +MGCLDE   LE GQ F+Q    F
Sbjct: 666 MPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQ----F 721

Query: 791 LGNC---FSKHGSRFAETKKLQ---VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD 844
            G     FS+    F  ++      ++KG VV+AKNPCLHPGDIR+L AVD P LHH+ D
Sbjct: 722 TGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVD 781

Query: 845 CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPV 903
           C+VFPQKG RPH NE SGSDLDGD+YFV WD+++IPP  +   PMEY  A +  L   V
Sbjct: 782 CVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPP--RQVQPMEYPPAPSIQLDHDV 838


>gi|147860348|emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
          Length = 697

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 283/662 (42%), Positives = 383/662 (57%), Gaps = 38/662 (5%)

Query: 523  FFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPP-TEVDPELPDIK 580
            F S  G T+  DI+  MG F+  +N+AK AAR+GQ FSS+  T++V           +I 
Sbjct: 2    FASRPGLTAA-DIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIEIH 60

Query: 581  RNG--YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR 638
            R+G  YVFSDGIGKI+ +LA  VA K     +  P A+QIRY G KGVVA  P      +
Sbjct: 61   RDGTTYVFSDGIGKISAELAHRVAIKCGCK-SSTPSAFQIRYGGYKGVVAVDPTSSR--K 117

Query: 639  MSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN 698
            +SLR+SM K++S +T L++ SW++++P FLNRQ+ITLLSTL V D +F   Q   + +L+
Sbjct: 118  LSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLD 177

Query: 699  QMLVDSDVAFEVLT-AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKA 757
             +L D   A E L   +  E  N    ML  G+ P  EP L  ML   RAA+L  LR K 
Sbjct: 178  TILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKT 237

Query: 758  RIFVPAGRWLMGCLDELGVLEGGQCFIQVS----EPFLGNCFSKHGSRFAETKKLQVIKG 813
            RIFVP GR +MGCLDE   LE G+ F+Q+S        G+    +GS         +++G
Sbjct: 238  RIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGS--GSHHDNFILEG 295

Query: 814  FVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVT 873
             VV+AKNPCLHPGD+RIL AVD P LHH+ DC+VFPQKG RPH +E SGSDLDGD+YFV 
Sbjct: 296  KVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVC 355

Query: 874  WDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHAD 933
            WD +LIPP + +  PM+Y  A  K L   V   ++ E+F  ++ N+ LG I NAH V AD
Sbjct: 356  WDHDLIPPRQIN--PMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFAD 413

Query: 934  HSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKIL 993
                 AL   C  LA+L + A++FPKTG    +P HL  K YPDFM K    +Y+S  ++
Sbjct: 414  KEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVI 473

Query: 994  GRLYRQSKDA--YDEDI-SVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQL 1050
            G+L+R+ KD   ++ DI S + +V +      YD D+EV    D++ DA+  K  YD +L
Sbjct: 474  GKLFREVKDVAPHNYDIRSFTRDVAMQS----YDADMEVDGFEDYVRDAFYYKSQYDFKL 529

Query: 1051 NGLLEQYKVNREEELVTGHIWSMPK-YNSRKQGELKERLKHSYSALRKEFRQVFEKMDSD 1109
              L++ Y +  E E+++G +  M K ++ RK  E    +  +  +LRKE R  F KM S 
Sbjct: 530  GSLMDCYGIRTESEILSGSLMKMSKSFDKRKDAEA---IALAVRSLRKEARTWFNKMGSG 586

Query: 1110 CELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLAR 1169
                  D+  A+    ASAWY VTYHP +     +    D       LSF W   D L +
Sbjct: 587  T-YAGADDVYAI----ASAWYHVTYHPYYWGCYNEGMYHDH-----FLSFPWCVYDKLIQ 636

Query: 1170 IK 1171
            IK
Sbjct: 637  IK 638


>gi|260801473|ref|XP_002595620.1| hypothetical protein BRAFLDRAFT_64730 [Branchiostoma floridae]
 gi|229280867|gb|EEN51632.1| hypothetical protein BRAFLDRAFT_64730 [Branchiostoma floridae]
          Length = 1282

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 297/791 (37%), Positives = 410/791 (51%), Gaps = 72/791 (9%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            VRR+ +TPT+   + PE+   NR+LRKY +  D F+RV+  DE    ++A          
Sbjct: 257  VRRVFVTPTRLMFMHPEIVRDNRILRKYGE--DNFMRVSIRDEDFCKLSA---------- 304

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
                      ++   F RV+  L  G  +  RK+ FLA S+SQLR+ + WFF+ DGK + 
Sbjct: 305  -------VGGEEETTFTRVKKFLQDGLLVGDRKYVFLAASNSQLREHNVWFFASDGKNTA 357

Query: 533  LDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVE--VPPTEVDPELPDIKR---NGYVF 586
              I+K MG F+D K  A   ARMGQCFS+T  +V   +   EV   +P++K    N Y F
Sbjct: 358  ESIRKDMGDFSDIKCPATVLARMGQCFSNTEPSVTALISAGEV-VRIPEVKGGYPNVYCF 416

Query: 587  SDGIGKITPDLAMEVAQKLKLDVNPP--PCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
            SDGIGKI+  LA +V ++  +       P AYQIRY G KGVVA  P+    + M +R S
Sbjct: 417  SDGIGKISQSLAQKVNERRAIGRGETEVPSAYQIRYGGVKGVVAVDPSLDSDV-MEVRPS 475

Query: 645  MNKFQSHHTTLEICSWTRFQPG--FLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLV 702
            M KF S    +EIC  +   PG  +LNRQ+IT+LS L VPD+ F  +Q++ML  L+ MLV
Sbjct: 476  MMKFLSFDQQIEICMTS--HPGRLYLNRQVITILSALGVPDQTFQQLQEAMLQNLSDMLV 533

Query: 703  DSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVP 762
              DVAFE +       G     +   G +  TEP  R ML  +    L  LR +ARI +P
Sbjct: 534  REDVAFESMKRRAQPLGLPLGRLSRCGLHVTTEPFFRAMLQKMFTCFLGELRRRARIEIP 593

Query: 763  A--GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKN 820
               GR ++G LDE G LE GQ F+Q +E            +  +TK    + G VV+ +N
Sbjct: 594  PEYGRNMLGVLDETGTLEYGQVFVQYTEDIT--------DKGGQTK----VTGDVVVTRN 641

Query: 821  PCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP 880
            PC HPGD+R L AVD P LHH+ D +VFP KG RPH NE SG DLDGD +FVTW   LI 
Sbjct: 642  PCFHPGDLRKLRAVDIPSLHHMVDVIVFPSKGPRPHPNEMSGGDLDGDQFFVTWYPGLIF 701

Query: 881  PSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGAL 940
            P K +  PM++ A   K L   V+  DII+F  +++ N+ LG I NAH+  A   + G  
Sbjct: 702  P-KPNQGPMDFTAQPKKELP-SVETHDIIDFIVEYIANDRLGQIANAHLAFAHTEKEGIF 759

Query: 941  DENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMG-KEAYQSYKSNKILGRLYRQ 999
               C+ LA+  + AVDFPKTG   T+    +P  YPDFMG K+   S +S  + G++YR+
Sbjct: 760  SSKCLGLAKKHSDAVDFPKTGVCPTLKMEERPLEYPDFMGKKKGKTSRRSEAVQGKMYRE 819

Query: 1000 SKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKV 1059
                      +  + D    +I  D D    +   +   +   K  +  +L  L+ QY +
Sbjct: 820  CLRIERVCSHLHKDKDTGGKNIEIDPDFTHKDRKRYAVSSRQAKDDFYDKLQDLMSQYGI 879

Query: 1060 NREEELVTGHIWSMPKY-NSRKQGELKERL-KHSYSALRKEFRQVF--EKMDSDCELLSE 1115
            + E E V+G    M  +   R +    ER+ K   + LRK+ RQ F  E    D   L  
Sbjct: 880  DTEAEAVSGCFVRMHHHMEDRYERFEAERIAKDRIAHLRKQTRQEFFAEFGGEDSIDLDH 939

Query: 1116 DEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCR 1175
              +N +   KASAWY  +Y               S  +  LLSF W+  D LA +K R  
Sbjct: 940  CPENVM--AKASAWYHASY---------------STGNPNLLSFPWVVADVLAELKKRAT 982

Query: 1176 EMANIDTSKPV 1186
              + I   +PV
Sbjct: 983  RSSPI-VEQPV 992


>gi|302918417|ref|XP_003052653.1| hypothetical protein NECHADRAFT_91974 [Nectria haematococca mpVI
            77-13-4]
 gi|256733593|gb|EEU46940.1| hypothetical protein NECHADRAFT_91974 [Nectria haematococca mpVI
            77-13-4]
          Length = 1250

 Score =  431 bits (1108), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 299/889 (33%), Positives = 455/889 (51%), Gaps = 85/889 (9%)

Query: 316  SDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYS 375
            SDP   IH    + FEI + +   + + I+N+H ++  F + L   +       L+++  
Sbjct: 334  SDPI--IH----LPFEIRYQLEVCISRDILNEHTITLEFLEKLASMNPRKARLYLEYLAD 387

Query: 376  YKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVE----VRRLVITPTKAYCLPPEVE 431
               PV +           + ++PE  +    I  I +    VR++V+TPT      P VE
Sbjct: 388  QGEPVQNPMS--------IFQNPEA-EAFSPIARIPQYCALVRKVVVTPTTIRFNSPAVE 438

Query: 432  LSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRV 491
            +SNRV+R+YK + DRFLR+ F++E   T                I +N   Q   ++KRV
Sbjct: 439  MSNRVMRQYKHIQDRFLRIQFVEELENTR---------------IAINK-DQNDEIYKRV 482

Query: 492  RSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKC 550
               +  G  +  R + FLAF SSQLR   A+FF     TS  DI+KWMG+F+  K +AK 
Sbjct: 483  LRTMYQGIRIGDRVYEFLAFGSSQLRVNGAYFFCPTEHTSCDDIRKWMGQFSHIKVVAKY 542

Query: 551  AARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVN 610
            AAR+GQCFS+T     +    +  E+PDI+RNG+ FSDG+GKI+P +A  V + + LD+ 
Sbjct: 543  AARLGQCFSTTREVRGISSPAIR-EIPDIERNGHCFSDGVGKISPFVAQLVNEDMALDIF 601

Query: 611  PPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNR 670
              P A+Q R  GCKGV+  WP    G+ + +RES  KF++    LEI     F    LNR
Sbjct: 602  DKPSAFQFRMGGCKGVLTVWP-DAKGMEVHVRESQKKFEADSKGLEIIRCAGFATATLNR 660

Query: 671  QIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSA 728
            Q I +L +L VP + F  + D  L    Q + D+ VA E+L     E      I  +L A
Sbjct: 661  QTIIILESLGVPIKAFTDLLDQQLGSYEQAMQDNGVAIEMLAKFVDEHQTNLVIAELLKA 720

Query: 729  GFNPQT--EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQV 786
             F      EP +  +L+  RA  L  L+EKARI V    +++GC+DE   L G     + 
Sbjct: 721  EFKTDELREPFVINVLSLWRAWSLKILKEKARIQVEKSAFVLGCVDETETLRGHSKDSEG 780

Query: 787  SEPFLGNCFSKHGSRFAETK---KLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLY 843
            S+P   N   +   +  +++   K  +I+G  ++ +NP LHPGDIR++EAVD  +L H+ 
Sbjct: 781  SKPKDVNMLPQIFLQITDSRNYNKTHIIQGVCIVGRNPSLHPGDIRVVEAVDCSKLRHIK 840

Query: 844  DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTR 901
            D +VFP  GDRP  N  SG DLDGD +FV W+ +LIP   K+W   PM+Y A + K L R
Sbjct: 841  DVVVFPATGDRPVPNMLSGGDLDGDDFFVIWEPSLIP---KTWNYSPMDYAAPKPKELDR 897

Query: 902  PVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
             V+  D+  FF K++ N+ L  I  +H+  AD  + G +   C+ LAEL + AVD+PKTG
Sbjct: 898  DVNVDDLRNFFVKYLKNDKLPLIATSHLGFAD--QLGPMSPKCLELAELHSKAVDYPKTG 955

Query: 962  KIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPV-D 1020
            +  T+    +P+ +P FM K+  Q Y S+K LG +       YD+ ++ +  +  NP+ D
Sbjct: 956  EPATLRRDQQPRKWPHFMEKK--QFYHSDKALGVI-------YDKVVNKAKVIQFNPIWD 1006

Query: 1021 IHYDTDLEVPESVD--FIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNS 1078
              +D  +     +D   +  A   K  YD  +  LL Q+ +  E EL TG   S P   +
Sbjct: 1007 SPFDDRITKKYKLDNELLKAARKVKSQYDTAVRRLLSQHDLKTEFELWTGFAMSKPAVGT 1066

Query: 1079 RKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVT----- 1133
                +L+E L H Y AL+  FR +       C   +  +     +R  +A Y VT     
Sbjct: 1067 --DYKLQESLSHEYDALKYRFRDI-------CYEAAGGKLTDQVDRFVAAMYTVTEEETK 1117

Query: 1134 -----YHPEWVKKSLDLQE--QDSARSVVLLSFAWIANDYLARIKIRCR 1175
                 +H   +  +  + +  +   +S+ L+SF WI +  + R+ +  +
Sbjct: 1118 IALFEHHRGPINDAGHILQPRKLEPKSMPLISFPWIFHWVMCRLALGAK 1166


>gi|291228412|ref|XP_002734181.1| PREDICTED: RNA-dependent RNA polymerase Family family member
            (rrf-3)-like [Saccoglossus kowalevskii]
          Length = 1491

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 279/793 (35%), Positives = 419/793 (52%), Gaps = 89/793 (11%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            +RR+++TP++   L PE+   NRVLR+Y +  +   R+ F DE  Q ++           
Sbjct: 384  LRRVMVTPSRLIFLQPELMFENRVLRRYSE--EYCARLVFKDENYQRLS----------- 430

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGK-TS 531
                  N  S  + V  ++ S L  GF +  R + FLA S+SQLR+   WF+++D    +
Sbjct: 431  ------NPVSISSDVANKIISTLQNGFQVADRNYEFLACSNSQLREHGCWFYAKDNHGNT 484

Query: 532  VLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPEL-------PDIKRNG 583
              +I++WMG F+  + +A   +RMGQCFS++  TV V   +V            DI +  
Sbjct: 485  AANIREWMGDFSKIRCVATYMSRMGQCFSTSEETVNVTVEDVTVSNIEDITGGMDINQKP 544

Query: 584  YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRE 643
            Y FSDGIGKI+  L  ++ +K +  V     AYQIRYAG KG+VA  P+   G ++ +R+
Sbjct: 545  YCFSDGIGKISKQLIEKICEKTEKHV--VASAYQIRYAGSKGMVALDPSLT-GEQIMIRK 601

Query: 644  SMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVD 703
            SM KF S H  +EI + T+     LNRQ+IT+LS L + D++F  +Q  ML+ L  M + 
Sbjct: 602  SMLKFPSEHDNIEIMNLTKPARLHLNRQVITILSGLGIEDKVFLKLQHRMLNNLANMFLK 661

Query: 704  SDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA 763
             DVA   L+   ++ G     M++ G +  TEP  + +L  +  + L  LR +ARI +P 
Sbjct: 662  EDVAAAWLSRR-SQIGINFKHMMTCGISLTTEPFFKSLLQAVYKSLLGELRRRARIILPP 720

Query: 764  --GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVI-KGFVVIAKN 820
               R +MG +DE G L+ GQ FIQ S+            +  + +K +++  G VV+ K 
Sbjct: 721  QFARNMMGVIDETGALQYGQVFIQYSK------------KLDKPQKEKIVHSGPVVVTKF 768

Query: 821  PCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP 880
            PC HPGD+R  +AVD P L+HL DC+VFP++G RPH NE +GSDLDGD YFVTW   L+ 
Sbjct: 769  PCYHPGDVRKFQAVDIPALYHLIDCIVFPRQGPRPHPNEMAGSDLDGDEYFVTWLPELL- 827

Query: 881  PSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGAL 940
              +++   M + AA  K LT PV+  D+I+F  +++ N+ LG + NAH+  AD    G  
Sbjct: 828  FDRENHEAMPFPAAVKKELTNPVEVADMIKFVTEYIQNDCLGLMANAHLAMADQQSDGIF 887

Query: 941  DENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQS 1000
             + C+ + +L + AVDF KTG   T+  + +P  YPDFMGK+   +YKS  ILG+LYR  
Sbjct: 888  SDMCLNICKLLSEAVDFAKTGNCPTLDKNQQPNTYPDFMGKQDKTNYKSKHILGKLYRHC 947

Query: 1001 KDAYDEDI------SVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLL 1054
                   I      S   + D +  ++  D  L  P   + ++ A      Y+ QL  L+
Sbjct: 948  WSLESATIPKLRAHSYHKDSDYDVRNVEVDQSLLYPGYEEHLSFANKSLKKYNNQLRLLM 1007

Query: 1055 EQYKVNREEELVTGHIWSMPKYNSRKQGE---------LKERLKHSYSALRKEFRQVFEK 1105
             QY +  E E ++G I    K N R  G+         ++ +L H  S  R+EF   F  
Sbjct: 1008 SQYGIESEAEAISGCI---TKLNKRITGKGERFDAEKVIRAKLAHLRSVTRREFDSSFGD 1064

Query: 1106 -----MDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFA 1160
                  D+D E   ++E+N     KASA+Y VTY               S R   L+SF 
Sbjct: 1065 EANGGSDNDDE---DEERNDKILAKASAFYYVTY---------------SQRDTQLISFP 1106

Query: 1161 WIANDYLARIKIR 1173
            W+  D L ++++R
Sbjct: 1107 WVVADLLRKVRLR 1119


>gi|326522592|dbj|BAK07758.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 597

 Score =  428 bits (1100), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 258/607 (42%), Positives = 351/607 (57%), Gaps = 49/607 (8%)

Query: 576  LPDIKRNG--YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAK 633
            LP++  NG  YVFSDGIG I+ D A EV++K KL     P A+QIRY G KGVVA  P  
Sbjct: 10   LPEVT-NGTKYVFSDGIGTISADFADEVSRKCKL-ARFTPSAFQIRYGGYKGVVAIDPRS 67

Query: 634  GDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSM 693
                ++SLR SM+KF S + TL++ +++++QP FLNRQ+ITLLSTL V D +F   Q + 
Sbjct: 68   H--WKLSLRSSMSKFPSENITLDVLAYSKYQPCFLNRQLITLLSTLGVRDNIFELKQQAA 125

Query: 694  LSKLNQMLVDSDVAFEVLT-AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWG 752
            + +LN+++ +   A + +      E  N    +L  G+ P  EP+L  +L   RA++L  
Sbjct: 126  VMQLNRLVTEPQAAIDAIELMPMGEITNVVKELLLCGYQPDVEPYLSMILQTFRASKLLE 185

Query: 753  LREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIK 812
            L+ K+RIF+P GR +MGCLDE   L+ G+ FIQ S        +    +F       V+ 
Sbjct: 186  LKTKSRIFIPEGRAMMGCLDETRTLKYGEVFIQASNS------ANESDKF-------VVT 232

Query: 813  GFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFV 872
            G VV+AKNPCLHPGDIRIL+AV  P L H+ +C+VFPQ+G RPH NE SGSDLDGD+YFV
Sbjct: 233  GKVVVAKNPCLHPGDIRILKAVYTPVLDHMVNCVVFPQQGPRPHPNECSGSDLDGDIYFV 292

Query: 873  TWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHA 932
            +WD +LIP   +   PM+Y  A  +TL   V   ++ E+FA ++VNE+LG I NAHVV A
Sbjct: 293  SWDPDLIP--TRMVAPMDYTPAPTETLDHDVVIEEVHEYFANYIVNESLGIIANAHVVFA 350

Query: 933  DHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKI 992
            D     A    CI LAEL + AVD+PKTG    +P+ L  + YPDFM K    +Y S  +
Sbjct: 351  DKESLKAESTQCIKLAELFSIAVDYPKTGVPAQIPSELHVREYPDFMEKLDRATYISKGV 410

Query: 993  LGRLYRQSKDA------YDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSY 1046
            +G+LYR+ K        + +D++  S          YDTDL V    D+I +A   K  Y
Sbjct: 411  IGKLYREIKKQSPHIGHFTKDVARRS----------YDTDLIVDGYQDYITEAVWFKGEY 460

Query: 1047 DGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKM 1106
            D +L  L+E Y +  E E+++G I  M K  ++       RL  +  +LRKE R  F  M
Sbjct: 461  DFKLGNLMEHYGIKSEAEIISGCILKMAKNFTKSSDADAIRL--AVKSLRKEARSWFSDM 518

Query: 1107 DSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDY 1166
             +D    S D   A +  KASAWY VTYHPE+      + E+       L+SF W   D 
Sbjct: 519  SAD---ESGDVHEASYA-KASAWYHVTYHPEYYGCYNKIYERPH-----LISFPWCVYDK 569

Query: 1167 LARIKIR 1173
            L  IK R
Sbjct: 570  LLHIKQR 576


>gi|367042188|ref|XP_003651474.1| hypothetical protein THITE_2048877 [Thielavia terrestris NRRL 8126]
 gi|346998736|gb|AEO65138.1| hypothetical protein THITE_2048877 [Thielavia terrestris NRRL 8126]
          Length = 1511

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 283/840 (33%), Positives = 433/840 (51%), Gaps = 94/840 (11%)

Query: 394  LLKDP---ELYKGPKQIDDIVE-VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLR 449
            LLKDP     Y     I D    VR++++TPT+ Y   P VE +NR++R+YK + D F+R
Sbjct: 482  LLKDPGALTYYPTTLHIPDYCALVRKVIVTPTRIYFNTPTVETTNRIVRRYKQVQDHFIR 541

Query: 450  VTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFL 509
            V F DE L+                 I      +   ++ RV  ++  G  +    + FL
Sbjct: 542  VQFTDELLEGR---------------IRACEVDRDDELYTRVYRVMMQGIRMGRWHWKFL 586

Query: 510  AFSSSQLRDCSAWFFSE-DGKTSVL--DIKKWMGRFTD-KNIAKCAARMGQCFSSTYATV 565
            AF +SQ+R+  A+FF + +G   +    I++WMG F+    +AK AAR+GQCFS+T    
Sbjct: 587  AFGNSQIRENGAFFFCQAEGYPDITCDTIRQWMGNFSHISTVAKLAARLGQCFSTTRLLR 646

Query: 566  EVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKG 625
             +    +  ++PD+++ G+ F+DG+GKI+  LA  V+Q  K  + PPP A+Q R  GCKG
Sbjct: 647  CISSPWI-VKIPDVEKGGFCFTDGVGKISMVLASLVSQDWK--IYPPPSAFQFRMGGCKG 703

Query: 626  VVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEM 685
            V+  WP    G+ + +R S  KF + +  LEI   ++F    LNRQ I +LS L VPD++
Sbjct: 704  VLVTWP-DAKGMEVHIRPSQEKFSAEYNGLEIIRCSQFSCATLNRQTILILSCLGVPDDV 762

Query: 686  FWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ--GNTAAIMLSAGFNPQTEPHLRGMLT 743
            F SM D  +S  +  + D D A E+L++   E     T A M+  GF    EP +R +L 
Sbjct: 763  FTSMMDEQISNYDAAMTDKDKAVELLSSYVDENMTSTTIARMVLNGFMHTQEPFVRTLLQ 822

Query: 744  CIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG----------------QCFIQVS 787
              R+  + GL+EKAR+ V  G +++GC+DE G L G                 Q F+QV 
Sbjct: 823  LWRSWSIKGLKEKARLIVDQGAFVLGCVDETGSLRGHSKATEGRKKIAQHHLPQIFLQVP 882

Query: 788  EPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLV 847
            +P              +    +VI G  ++ +NP LHPGDIR++EAVD P+L HL D +V
Sbjct: 883  DP-------------RDRGAYKVITGLCLVGRNPSLHPGDIRVVEAVDLPQLRHLRDVVV 929

Query: 848  FPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRD 907
            FP  GDR   +  SG DLDGD +FV WD  LIPP + S PPM Y+A ++ T  R    + 
Sbjct: 930  FPLSGDRDIPSMCSGGDLDGDDFFVIWDPKLIPP-EWSHPPMNYSAPKSLTEPRASTAKS 988

Query: 908  IIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMP 967
            +  FF   M N+ L  I +AH+  AD+   GA    C+ LAEL +TAVD+ KTG      
Sbjct: 989  LATFFVLFMKNDRLPLIAHAHLATADYEVEGAKHRKCLQLAELHSTAVDYVKTGVPAEWN 1048

Query: 968  AHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDL 1027
              L P+ YP FM K   +SY S  +LG+LY    D  D  +  +S+    P D    +  
Sbjct: 1049 KKLDPRKYPHFMEKPKSKSYHSTSVLGKLY----DMVDRVVFDNSDNYKLPFDDRILSRF 1104

Query: 1028 EVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKER 1087
              P   + + +A   K  YD  +  ++ Q ++  E E+ T  + S P+  +  +  ++E+
Sbjct: 1105 H-PLGSNILKEARKIKTQYDIAMRRIMGQLEIRTEFEVWTAFVLSKPRVGTDYK--VQEK 1161

Query: 1088 LKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERK--ASAWYQVTY----------- 1134
            +    + L+K+FR +       C  ++E+     F+R   A+A Y+VT+           
Sbjct: 1162 VGREAAGLKKQFRDL-------CLKVAEEHH---FDRLEFAAAMYRVTWEETRIALYEAR 1211

Query: 1135 HPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVA 1194
             P  +        + SARS+ L+SF W+  + L RI I    +++++     +++AR  A
Sbjct: 1212 QPHVLPDGTVGLRRISARSMPLISFPWLFPNELGRIAIGAERLSSLN-----DFVARPAA 1266


>gi|4375829|emb|CAA09894.1| RNA-directed RNA polymerase [Arabidopsis thaliana]
          Length = 513

 Score =  425 bits (1092), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/531 (43%), Positives = 327/531 (61%), Gaps = 26/531 (4%)

Query: 535  IKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK----RNGYVFSDG 589
            I+ WMG F   +N+AK AAR+GQ FSS+  T+ V   E++  +PD++       YVFSDG
Sbjct: 1    IRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIE-VIPDVEIISLGTRYVFSDG 59

Query: 590  IGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQ 649
            IGKI+ + A +VA+K  L     P A+QIRY G KGVVA  P      ++SLR+SM+KF+
Sbjct: 60   IGKISAEFARKVARKCGL-TEFSPSAFQIRYGGYKGVVAVDPNSSK--KLSLRKSMSKFE 116

Query: 650  SHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFE 709
            S +T L++ +W+++QP ++NRQ+ITLLSTL V D +F   Q  ++ +L+ +L     A E
Sbjct: 117  SENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHE 176

Query: 710  VL-TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLM 768
             L   A  E  N    ++  G+ P  EP L  ML   RA++L  LR K RIF+  GR +M
Sbjct: 177  ALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMM 236

Query: 769  GCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDI 828
            GCLDE   LE GQ  +Q S+P       + G RF       +I G VV+AKNPCLH GD+
Sbjct: 237  GCLDETRTLEYGQVVVQYSDPM------RPGRRF-------IITGPVVVAKNPCLHSGDV 283

Query: 829  RILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPP 888
            R+L+AV+ P L+H+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD+ L+PP  ++  P
Sbjct: 284  RVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPP--RTSEP 341

Query: 889  MEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLA 948
            M+Y     + L   V   ++ E+FA ++VN++LG I NAH   AD     A  + CI LA
Sbjct: 342  MDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELA 401

Query: 949  ELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDI 1008
            +  +TAVDFPKTG    +P HL  K YPDFM K    +Y+S  ++G+L+R+ K+     I
Sbjct: 402  KKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLI 461

Query: 1009 SVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKV 1059
            S+ S   ++     YD D+EV    +++ +A+ QK +YD +L  L++ Y +
Sbjct: 462  SIKS-FTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGI 511


>gi|46128677|ref|XP_388892.1| hypothetical protein FG08716.1 [Gibberella zeae PH-1]
          Length = 1295

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 292/889 (32%), Positives = 431/889 (48%), Gaps = 119/889 (13%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            + FE+ + +   + +G +N+H+++  F D L                    P   A + L
Sbjct: 399  LPFEVRYQLEVCISQGQLNEHKITKEFLDKLASM-----------------PSHRAKEYL 441

Query: 388  KLVQEWLLKD------------------PELYKGPKQIDDIVE-VRRLVITPTKAYCLPP 428
            +   E +LKD                   + YK   +I      VRR VITPT      P
Sbjct: 442  EFAAERVLKDGHPTTIDPMSTFDSQRDSGDNYKSISRIPQYCGLVRRAVITPTTVRYSTP 501

Query: 429  EVELSNRVLRKYKDLADRFLRVTF---MDEGLQTMNANVLSYFIAPIVRDITLNSFSQKT 485
             +E+SNRV+R+++ + DRFLR+ F   M++G  T+N +                   Q  
Sbjct: 502  NIEVSNRVMRRFRHIQDRFLRIQFTEEMEKGKITVNKD-------------------QND 542

Query: 486  RVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD- 544
             ++KR+   +  G  +  R + FLAF +SQLR   A+FF      S  DI++WMG+F+  
Sbjct: 543  EIYKRILRTMYEGIRIGDRLYEFLAFGNSQLRSNGAYFFCPTEYVSCDDIRQWMGQFSHI 602

Query: 545  KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQK 604
            K +AK AAR+GQCFS+T     +       ++PD++RNGY F+DG+GKI+  LA  V + 
Sbjct: 603  KVVAKYAARLGQCFSTTRDVRGISSPNC-LQIPDVERNGYCFTDGVGKISVFLAKLVGED 661

Query: 605  LKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQ 664
            + +D+   P A+Q R  GCKGV+A WP    G  + +RES  KF+S    LEI  W R+ 
Sbjct: 662  MAIDICADPSAFQFRMGGCKGVLAVWPEDAKGTEVHVRESQKKFESDSKGLEIIRWARYA 721

Query: 665  PGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTA-- 722
               LN Q I +L  L VP + F ++ D  L +    + D+DVA E+L     EQ N +  
Sbjct: 722  TATLNLQTILILECLGVPIKSFTTLLDQQLKQYELAMRDNDVAIEMLERFRDEQHNHSCL 781

Query: 723  AIMLSAGFNPQT--EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
            A +L A F  +T  EP +  ++   ++  +  L+EKARI VP   +++GC+DE G L G 
Sbjct: 782  ADLLRADFKTETFQEPFVVNVINLWQSWSIKSLKEKARIHVPKSAFVLGCVDETGTLRGH 841

Query: 781  ----------------QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLH 824
                            Q F+Q+S+P   N             K  +I+G  V+ +NP LH
Sbjct: 842  SFDTEGSKEKDVHRLPQIFLQISDPKKYN-------------KTSIIRGPCVVGRNPSLH 888

Query: 825  PGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKK 884
            PGDIR++EAVD   LHHL D +VFP  GDRP  N  SG DLDGD +FV WD +L+ PS+ 
Sbjct: 889  PGDIRVVEAVDCKALHHLTDVVVFPSTGDRPVPNMLSGGDLDGDDFFVIWDPSLM-PSEW 947

Query: 885  SWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENC 944
            + PPM Y+  +   L R V+  D+  FF K++ N+ L  I  +H   AD  E G     C
Sbjct: 948  NHPPMNYSPLDPIELKRDVNVDDLRNFFVKYLKNDKLPLIAMSHRAFAD--ELGPKSSKC 1005

Query: 945  ILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAY 1004
            + LAEL + AVD+PKTG    +    +P+ +P +M  E   SY S K LG +Y       
Sbjct: 1006 LELAELHSKAVDYPKTGNPAVLRQDQQPRKWPHWM--EKRHSYHSRKALGVIY------- 1056

Query: 1005 DEDISVSSEVDINPV-DIHYDTDLEVPESVD--FIADAWNQKCSYDGQLNGLLEQYKVNR 1061
              D     +V+ NPV D  +D  +     +D   +  A   K  YD  +  +L Q  +  
Sbjct: 1057 --DKVAHKKVEFNPVWDRPFDKRITKRFELDNETLGVARKIKAEYDTAVRRILSQNSLKT 1114

Query: 1062 EEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNAL 1121
            E EL T    + P   S  +             L  EFR + E     C   +  +    
Sbjct: 1115 EFELFTSFPLTRPAVGSDYKFA---------EDLSCEFRSIKEHYQDVCIKAAGGKDAEK 1165

Query: 1122 FERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARI 1170
             E   +A Y VT      ++S+   +    +S+ L+SF WI +  + RI
Sbjct: 1166 LEPFVAAMYTVTEEQIKNEESILQPQGLEPKSMPLISFPWIFHGVMCRI 1214


>gi|255635133|gb|ACU17923.1| unknown [Glycine max]
          Length = 290

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/291 (72%), Positives = 236/291 (81%), Gaps = 10/291 (3%)

Query: 916  MVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY 975
            MVNE+LG ICNAHVVHAD S+YGALDE CI LAELAATAVDFPKTGK+VTMP HLKPKLY
Sbjct: 1    MVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLY 60

Query: 976  PDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDF 1035
            PDFMGKE +QSY+S KILGRLYR+ KDAYDEDI     ++     I YD DLEVP S DF
Sbjct: 61   PDFMGKERHQSYRSKKILGRLYRRIKDAYDEDIDAPY-LNFVTGGIPYDKDLEVPGSADF 119

Query: 1036 IADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSAL 1095
            IADAW QKCSYDGQL+GLL QYKV REEE+VTG IWSMPKYNSRKQGELKERLKHSYSAL
Sbjct: 120  IADAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSAL 179

Query: 1096 RKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDL-------QEQ 1148
            +KEFR  FEK++SD   LSE+EKN  +E+KASAWYQVTYHPEWVKKSLDL       QE 
Sbjct: 180  KKEFRHTFEKLNSDVGELSEEEKNLFYEQKASAWYQVTYHPEWVKKSLDLQDKSSENQEA 239

Query: 1149 DSARSVVLLSFAWIANDYLARIKIRCREM--ANIDTSKPVNYLARYVADRI 1197
            DS  S V+LSF WIA DYLAR KIR R     N D++KPV+ LA+Y+++R+
Sbjct: 240  DSLGSTVMLSFPWIAVDYLARTKIRQRHQRCGNFDSTKPVDSLAKYLSERL 290


>gi|350631624|gb|EHA19995.1| hypothetical protein ASPNIDRAFT_179412 [Aspergillus niger ATCC 1015]
          Length = 1201

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 297/880 (33%), Positives = 441/880 (50%), Gaps = 91/880 (10%)

Query: 328  ISFEIMFLVNAVMHKGIINQ----HQLSDSFFDLLRGQSREV--NVAALKHIYSYKWPVF 381
            + F + + +   +  G +++    H+ +    +L   ++R++  NVA  KH Y     +F
Sbjct: 375  LPFPVRYQLEVCISNGYLSEFTMTHEFAVKLAELGEAKARKLLENVAGQKHQYYDPMKIF 434

Query: 382  DACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYK 441
            D    ++ ++    K P              +R   ITP+  Y   P V++SNR++R+Y 
Sbjct: 435  D-LPFVRGIRATKAKIPPY---------CCHMRSATITPSTVYYNLPSVDISNRIIRRYM 484

Query: 442  DLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYL 501
            + ADRFLRV F DE L                  I   S +    +F R++  L+ G  +
Sbjct: 485  EHADRFLRVRFTDEKLYGR---------------INARSDNSNDEIFTRIKRALANGIVI 529

Query: 502  CGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSS 560
              R++ FLAF +SQ R+  A+FF+     +  +I+ WMG F+D +N+AK AAR+GQCFS+
Sbjct: 530  GDRRYEFLAFGNSQFREHGAYFFAPLPDLTAANIRAWMGHFSDIRNVAKYAARLGQCFST 589

Query: 561  TYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV--NPPPCAYQI 618
            T A    P  ++   +PD++RNGY FSDG+GKI+  LA     +LK+      PP A+Q 
Sbjct: 590  TRAVAGCP-VQIR-NIPDVERNGYTFSDGVGKISRFLAQMAMTELKIKTPTGEPPSAFQF 647

Query: 619  RYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLST 678
            R  GCKG++A   +      + +RES NKF + H  LEI  W++F    LNRQ+I ++ST
Sbjct: 648  RLGGCKGMLAV-SSDAQPQEIHIRESQNKFPTVHNGLEIIRWSQFSMATLNRQLILVMST 706

Query: 679  LNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEP 736
            L VPDE+F +   SML  L++ +     A EVL         T  +  M+S GF    EP
Sbjct: 707  LGVPDEVFHAKLKSMLRALDEAMESDSRAIEVLKKYVDPNQTTLTVSQMVSDGFRRSKEP 766

Query: 737  HLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG-------------GQCF 783
             L  +L   R   +  L+EKA+I +  G  L+G +DE G+L+G              Q  
Sbjct: 767  FLTSILALWRTWHIKYLKEKAKIVIDKGTNLLGVMDETGILKGYFYDKIPKKDASLEQKL 826

Query: 784  IQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLY 843
              + E FL    S+     A     +VI+G  ++A+NP LHPGDIR++ AV+ PELH L 
Sbjct: 827  AALPEIFLQIPRSEASEDGA---TYEVIEGLCILARNPSLHPGDIRVVRAVNVPELHSLR 883

Query: 844  DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTR 901
            D +V PQ GDR   +  SG DLDGD Y + WD++LI    K W   PM Y + +A+ L  
Sbjct: 884  DVVVLPQTGDRDIASMCSGGDLDGDDYLIIWDQDLI---HKDWFLDPMRYTSNKAQDLDH 940

Query: 902  PVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
             V   ++  FF  +M N++L TI +AHV  AD  E G  +E CI LA+L + AVD+ KTG
Sbjct: 941  DVTVDEVTSFFVMYMKNDSLPTIAHAHVAWADQLEDGVNEEKCIRLAQLHSDAVDYNKTG 1000

Query: 962  KIVTMPAHLKPKLYPDFMGKEAYQS--YKSNKILGRLYRQSKDAYDE-DISVSSEVDINP 1018
            +   M  +L+P+ +P FM K   +   Y S KILG+LY    DA +  D   S E+   P
Sbjct: 1001 RPAIMTRNLQPRRWPHFMEKPKPKDLIYHSEKILGQLY----DAVERVDFVPSLEM---P 1053

Query: 1019 VDIH-YDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYN 1077
             D    +  +EV E  D    A N K  +D  +  ++ Q+++  E E     IWS    N
Sbjct: 1054 FDERILNCSIEVNE--DLYTFAKNLKVEHDTAIRRIMAQHEIKTEFE-----IWSTFILN 1106

Query: 1078 SRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPE 1137
               Q     +      A+    R+ F K    C    E     L    A A Y+VT+  E
Sbjct: 1107 -HSQMSKDYKFHEEIGAISAAHRETFRK---QCYNKVEGRTFELLAPLAVAMYRVTH--E 1160

Query: 1138 WVKKSLDLQEQDSAR-------SVVLLSFAWIANDYLARI 1170
             + ++L    + S +        + L+SF WI    L R+
Sbjct: 1161 EMTQALRKHREKSPQHGTPKINQLPLISFPWILPHILGRV 1200


>gi|342879234|gb|EGU80489.1| hypothetical protein FOXB_08949 [Fusarium oxysporum Fo5176]
          Length = 1391

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 291/869 (33%), Positives = 436/869 (50%), Gaps = 78/869 (8%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            + FEI + +   + +G +N+H +   F + L           L+ +      V D    L
Sbjct: 396  LPFEIRYQLEVCLSRGYLNEHMIGREFLERLANMKPAKARLCLESVADNAQVVIDPMAIL 455

Query: 388  KLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRF 447
            +  Q  +     + + P        +R+ VITPT      P VE+SNRV+R+YK   DRF
Sbjct: 456  EESQ--IDGSIIMSRIPSHC---CLIRKAVITPTTIRYTTPTVEMSNRVMRRYKHYEDRF 510

Query: 448  LRVTF---MDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGR 504
            L++ F   M++G   +N +                   Q   ++KRV   +  G  +  R
Sbjct: 511  LKIQFTEEMEKGRIAVNKD-------------------QNDEIYKRVLRSMYKGVRIGDR 551

Query: 505  KFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSST-- 561
             + FLAF +SQLR   A+FF      S  DI++WMG+F+  K +AK AAR+GQCFS+T  
Sbjct: 552  FYEFLAFGNSQLRVNGAYFFCPTEHLSCDDIRRWMGQFSHIKVVAKYAARLGQCFSTTRE 611

Query: 562  YATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYA 621
               +  P T+   ++PDI+RNGY F+DGIGKI+  LA  +++ + LDV   P A+Q R  
Sbjct: 612  LHAISAPATQ---QIPDIERNGYCFTDGIGKISSFLAQLISEDMILDVVARPSAFQFRMG 668

Query: 622  GCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNV 681
            GCKGV+A WP     + + +RES  KF+S    LEI          LNRQ IT+L  L V
Sbjct: 669  GCKGVLAIWPNDTKVMEVHIRESQKKFESDSKGLEIIRSAAMATATLNRQTITILECLGV 728

Query: 682  PDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQ--TEPHLR 739
            P   F ++ D  L      + D+DVA ++LT    E  N  + +L AGF      EP + 
Sbjct: 729  PIASFTNLLDHQLRSYELAMEDNDVAIDMLTKFVDE--NNISDLLRAGFKTDDLQEPFVV 786

Query: 740  GMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHG 799
             +L   R+  L  L+EKARI V    +++GC+DE G L G     + SE    +   +  
Sbjct: 787  NVLKLWRSWSLKLLKEKARIQVQKSAFVLGCVDETGTLRGHSSETEGSEDKATDRLPQIF 846

Query: 800  SRFAET---KKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPH 856
             + ++     K QVI G  +I +NP LHPGDIR++EAVD P LHHL D +VFP  GD+P 
Sbjct: 847  IQLSDATHYNKTQVISGVCIIGRNPSLHPGDIRVVEAVDCPALHHLRDVVVFPSTGDQPV 906

Query: 857  TNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHM 916
             N  SG DLDGD +FV W+  LI P + ++PPM Y A +   L R V   D+  FF K++
Sbjct: 907  PNMLSGGDLDGDDFFVIWEPTLI-PRRWNYPPMNYLAPKPIELDRDVTVDDLRNFFVKYL 965

Query: 917  VNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYP 976
             N+ L  I  +H+  +D  + G +   C+ LAEL + AVD+PKTG    +    +P+ +P
Sbjct: 966  KNDKLPLIATSHLAFSD--DLGPMSPKCLELAELHSKAVDYPKTGDPAVLRRDQQPRKWP 1023

Query: 977  DFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPV-DIHYDTDL--EVPESV 1033
             FM K+   SY S K LG ++ + K           +V  +P+ D  +D  +  +   + 
Sbjct: 1024 HFMEKK--NSYTSRKALGVIFDKVK---------GKQVKFDPIWDSPFDQRIIKKFELNR 1072

Query: 1034 DFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYS 1093
            D +  A   K  YD  +  LL Q+ +  E EL TG   S P   S  +  ++E L+  Y+
Sbjct: 1073 DTLKSARKIKTQYDTSVRRLLSQHALKTEFELWTGFAMSKPAVGSDYK--VQEELRREYN 1130

Query: 1094 ALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVT----------YHPEWVKKSL 1143
             L+  FRQ+       C   +  +     E   +A Y+VT          +H   +  + 
Sbjct: 1131 NLKAAFRQL-------CIDTAGSKNAEKLEPFVAAMYKVTDEEMKIALYEHHRGVINDAG 1183

Query: 1144 DLQE--QDSARSVVLLSFAWIANDYLARI 1170
             L +  +   +S+ L+SF WI +  + R+
Sbjct: 1184 TLLQPRKLEPKSMPLISFPWIFHKEMCRM 1212


>gi|145245289|ref|XP_001394912.1| RNA-directed RNA polymerase (Sad-1) [Aspergillus niger CBS 513.88]
 gi|134079610|emb|CAK40827.1| unnamed protein product [Aspergillus niger]
          Length = 1382

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 296/880 (33%), Positives = 441/880 (50%), Gaps = 91/880 (10%)

Query: 328  ISFEIMFLVNAVMHKGIINQ----HQLSDSFFDLLRGQSREV--NVAALKHIYSYKWPVF 381
            + F + + +   +  G +++    H+ +    +L   ++R++  NVA  KH Y     +F
Sbjct: 384  LPFPVRYQLEVCISNGYLSEFTMTHEFAVKLAELGEAKARKLLENVAGQKHQYYDPMKIF 443

Query: 382  DACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYK 441
            D    ++ ++    K P              +R   ITP+  Y   P V++SNR++R+Y 
Sbjct: 444  D-LPFVRGIRATKAKIPPY---------CCHMRSATITPSTVYYNLPSVDISNRIIRRYM 493

Query: 442  DLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYL 501
            + ADRFLRV F DE L                  I   S +    +F R++  L+ G  +
Sbjct: 494  EHADRFLRVRFTDEKLYGR---------------INARSDNSNDEIFTRIKRALANGIVI 538

Query: 502  CGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSS 560
              R++ FLAF +SQ R+  A+FF+     +  +I+ WMG F+D +N+AK AAR+GQCFS+
Sbjct: 539  GDRRYEFLAFGNSQFREHGAYFFAPLPDLTAANIRAWMGHFSDIRNVAKYAARLGQCFST 598

Query: 561  TYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV--NPPPCAYQI 618
            T A    P  ++   +PD++RNGY FSDG+GKI+  LA     +LK+      PP A+Q 
Sbjct: 599  TRAVAGCP-VQIR-NIPDVERNGYTFSDGVGKISRFLAQMAMTELKIKTPTGEPPSAFQF 656

Query: 619  RYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLST 678
            R  GCKG++A   +      + +RES NKF + H  L+I  W++F    LNRQ+I ++ST
Sbjct: 657  RLGGCKGMLAV-SSDAQPQEIHIRESQNKFPTVHNGLDIIRWSQFSMATLNRQLILVMST 715

Query: 679  LNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEP 736
            L VPDE+F +   SML  L++ +     A EVL         T  +  M+S GF    EP
Sbjct: 716  LGVPDEVFHAKLKSMLRALDEAMESDSRAIEVLKKYVDPNQTTLTVSQMVSDGFRRSKEP 775

Query: 737  HLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG-------------GQCF 783
             L  +L   R   +  L+EKA+I +  G  L+G +DE G+L+G              Q  
Sbjct: 776  FLTSILALWRTWHIKYLKEKAKIVIDKGTNLLGVMDETGILKGYFYDKIPKKDASLEQKL 835

Query: 784  IQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLY 843
              + E FL    S+     A     +VI+G  ++A+NP LHPGDIR++ AV+ PELH L 
Sbjct: 836  AALPEIFLQIPRSEASEDGA---TYEVIEGLCILARNPSLHPGDIRVVRAVNVPELHSLR 892

Query: 844  DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTR 901
            D +V PQ GDR   +  SG DLDGD Y + WD++LI    K W   PM Y + +A+ L  
Sbjct: 893  DVVVLPQTGDRDIASMCSGGDLDGDDYLIIWDQDLI---HKDWFLDPMRYTSNKAQDLDH 949

Query: 902  PVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
             V   ++  FF  +M N++L TI +AHV  AD  E G  +E CI LA+L + AVD+ KTG
Sbjct: 950  DVTVDEVTSFFVMYMKNDSLPTIAHAHVAWADQLEDGVNEEKCIRLAQLHSDAVDYNKTG 1009

Query: 962  KIVTMPAHLKPKLYPDFMGKEAYQS--YKSNKILGRLYRQSKDAYDE-DISVSSEVDINP 1018
            +   M  +L+P+ +P FM K   +   Y S KILG+LY    DA +  D   S E+   P
Sbjct: 1010 RPAIMTRNLQPRRWPHFMEKPKPKDLIYHSEKILGQLY----DAVERVDFVPSLEM---P 1062

Query: 1019 VDIH-YDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYN 1077
             D    +  +EV E  D    A N K  +D  +  ++ Q+++  E E     IWS    N
Sbjct: 1063 FDERILNCSIEVNE--DLYTFAKNLKVEHDTAIRRIMAQHEIKTEFE-----IWSTFILN 1115

Query: 1078 SRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPE 1137
               Q     +      A+    R+ F K    C    E     L    A A Y+VT+  E
Sbjct: 1116 -HSQMSKDYKFHEEIGAISAAHRETFRKQ---CYNKVEGRTFELLAPLAVAMYRVTH--E 1169

Query: 1138 WVKKSLDLQEQDSAR-------SVVLLSFAWIANDYLARI 1170
             + ++L    + S +        + L+SF WI    L R+
Sbjct: 1170 EMTQALRKHREKSPQHGTPKINQLPLISFPWILPHILGRV 1209


>gi|408392756|gb|EKJ72076.1| hypothetical protein FPSE_07701 [Fusarium pseudograminearum CS3096]
          Length = 1206

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 289/890 (32%), Positives = 431/890 (48%), Gaps = 121/890 (13%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            + FE+ + +   + +G +N+H+++  F   L                    P   A + L
Sbjct: 310  LPFEVRYQLEVCISQGQLNEHKITKEFLGKLASM-----------------PSHRAKEYL 352

Query: 388  KLVQEWLLKDP------------------ELYKGPKQIDDIVE-VRRLVITPTKAYCLPP 428
            +   E +LKD                   + YK   +I      VRR VITPT      P
Sbjct: 353  EFAAERVLKDGHPTTTDPMSTFDSQRDSGDNYKSISRIPQYCGLVRRAVITPTTVRYSTP 412

Query: 429  EVELSNRVLRKYKDLADRFLRVTF---MDEGLQTMNANVLSYFIAPIVRDITLNSFSQKT 485
             +E+SNRV+R+++ + DRFLR+ F   M++G  T+N +                   Q  
Sbjct: 413  NIEVSNRVMRRFRHIQDRFLRIQFTEEMEKGKITVNKD-------------------QND 453

Query: 486  RVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD- 544
             ++KR+   +  G  +  R + FLAF +SQLR   A+FF      S  DI++WMG+F+  
Sbjct: 454  EIYKRILRTMYEGIRIGDRLYEFLAFGNSQLRSNGAYFFCPTEYVSCDDIRQWMGQFSHI 513

Query: 545  KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQK 604
            K +AK AAR+GQCFS+T     +       ++PD++RNGY F+DG+GKI+  LA  V + 
Sbjct: 514  KVVAKYAARLGQCFSTTRDVRGISSPNC-LQIPDVERNGYCFTDGVGKISVFLAKLVGED 572

Query: 605  LKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQ 664
            + +D+   P A+Q R  GCKGV+A WP    G  + +RES  KF+S    LEI  W R+ 
Sbjct: 573  MAIDICADPSAFQFRMGGCKGVLAVWPEDAKGTEVHVRESQKKFESDSKGLEIIRWARYA 632

Query: 665  PGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI 724
               LN Q I +L  L VP   F ++ D  L +    + D+DVA E+L     EQ N + +
Sbjct: 633  TATLNLQTILILECLGVPIRSFTTLLDQQLRQYELAMRDNDVAIEMLERFRDEQHNHSCL 692

Query: 725  --MLSAGFNPQT--EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
              +L A F  +T  EP +  ++   ++  +  L+EKARI VP   +++GC+DE G L G 
Sbjct: 693  ADLLRADFKTETFQEPFVVNVINLWQSWSIKSLKEKARIHVPKSAFVLGCVDETGTLRGH 752

Query: 781  ----------------QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLH 824
                            Q F+Q+S+P              +  K  +I+G  V+ +NP LH
Sbjct: 753  SFDTEGSKEKDVHRLPQIFLQISDP-------------KKYNKTSIIRGPCVVGRNPSLH 799

Query: 825  PGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKK 884
            PGDIR++EAVD   LHHL D +VFP  GDRP  N  SG DLDGD +FV WD +L+ PS+ 
Sbjct: 800  PGDIRVVEAVDCKALHHLTDVVVFPSTGDRPVPNMLSGGDLDGDDFFVIWDPSLM-PSEW 858

Query: 885  SWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENC 944
            + PPM Y+  +   L R V+  D+  FF K++ N+ L  I  +H   AD  E G     C
Sbjct: 859  NHPPMNYSPLDPIELKRDVNVDDLRNFFVKYLKNDKLPLIAMSHRAFAD--ELGPKSSKC 916

Query: 945  ILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAY 1004
            + LAEL + AVD+PKTG    +    +P+ +P +M  E   SY S K LG +Y       
Sbjct: 917  LELAELHSKAVDYPKTGNPAVLRQDQQPRKWPHWM--EKRYSYHSRKALGVIY------- 967

Query: 1005 DEDISVSSEVDINPV-DIHYDTDLEVPESVD--FIADAWNQKCSYDGQLNGLLEQYKVNR 1061
              D     +V+ NPV D  +D  +     +D   +  A   K  YD  +  +L Q  +  
Sbjct: 968  --DKVAHKKVEFNPVWDSSFDKRITKRFELDNETLGVARKIKAEYDTAVRRVLSQNALKT 1025

Query: 1062 EEELVTGHIWSMPKYNSRKQGELKERLKHSYSA-LRKEFRQVFEKMDSDCELLSEDEKNA 1120
            E EL T    + P   S           + ++  L  EFR + E     C   +  +   
Sbjct: 1026 EFELFTSFPLTRPAVGS----------DYKFAEDLSCEFRSIKEHYQDVCIKAAGGKDAE 1075

Query: 1121 LFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARI 1170
              E   +A Y VT      ++S+   +    +S+ L+SF WI +  + RI
Sbjct: 1076 KLEPFVAAMYTVTEEQIKNEESILQPQGLEPKSMPLISFPWIFHGVMCRI 1125


>gi|340975703|gb|EGS22818.1| RNA-directed RNA polymerase-like protein [Chaetomium thermophilum
            var. thermophilum DSM 1495]
          Length = 1626

 Score =  418 bits (1074), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 322/1078 (29%), Positives = 505/1078 (46%), Gaps = 142/1078 (13%)

Query: 178  IAFALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDI 237
            I F++     HA    ++++E     I  + ++S+   V +++  A +P V  R  D + 
Sbjct: 302  INFSVNVDHFHA---GQYRLEMRFEIIKRIHRFSQDGRVRLVIVCADAPLVRQRRDDQNG 358

Query: 238  LVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNS-YRISISSRHRGKLSKVITYL-----GE 291
             +L    +  +++ W R TD   S ++    +   +         L +  TY+      E
Sbjct: 359  RLLADRLVWGENELWYRVTDIETSSSLDHMRTPLSLDEGEYKFVDLGRWTTYMLDIDDCE 418

Query: 292  RRVQVDSLSRPITIREEPD---------------------FEVPM-SDPFFCIH------ 323
              +++++L R   I+ + D                      E P  S    C        
Sbjct: 419  AWLEIETLLRDWNIKTDLDTTFDQVSGKRSMLWDVLADMTLEAPAASSNSLCFSDLVLLG 478

Query: 324  --YEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSRE--VNVAALKHIYSYKWP 379
                  + F+I + +   + +G++ ++ ++  F D L   S+   + V+  + I  Y   
Sbjct: 479  FPTNTSLPFDIRYQLEVCLSRGVLCEYNITQEFLDKLLELSKPDGMEVSRARLILEY--- 535

Query: 380  VFDACKRLKLVQEWLLKDPELYKGPKQI---DDIVEVRRLVITPTKAYCLPPEVELSNRV 436
              D  KR+            L   P  +        VR++ ITPT+ Y   P VE +NRV
Sbjct: 536  AADQGKRIWDPMSLFSDQAALSYCPTTLHIPSHCALVRKVTITPTRIYFSTPTVETTNRV 595

Query: 437  LRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILS 496
            +R Y    D F+RV F DE    M   + S +              ++  V+ RV  +L 
Sbjct: 596  VRHYGRFRDYFIRVQFTDE---VMEGRIRSSYT------------DREDNVYARVFRVLR 640

Query: 497  GGFYLCGRKFSFLAFSSSQLRDCSAWFFSE----DGKTSVLDIKKWMGRFTD-KNIAKCA 551
             G  +    + FLA+ +SQ+R+C ++FF E     G  +   I++WMGRF+  K+IAK A
Sbjct: 641  HGIRMGKWHWKFLAYGNSQIRECGSFFFCEPEEAHGTITCDSIREWMGRFSHIKSIAKLA 700

Query: 552  ARMGQCFSSTYATVEV-PPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVN 610
            AR+GQCFS+T     +  PT +  +  D++RNGY F+DG+GKI+P LA  +A+  K  V 
Sbjct: 701  ARLGQCFSTTRPLPGITAPTIIKTQ--DVERNGYCFTDGVGKISPLLAFFIAEDWK--VY 756

Query: 611  PPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNR 670
            P P A+Q R  GCKGV+  WP    G  + +R S  KF +    LEI   + F    LNR
Sbjct: 757  PTPSAFQFRMGGCKGVLVTWP-DAKGTEVHIRPSQEKFSAEFNGLEIIRCSHFSCATLNR 815

Query: 671  QIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSA 728
            Q IT+LS L VP  +F  M +  L+  +  + D D A ++LT    E   T  +  M+  
Sbjct: 816  QTITILSCLGVPSYVFLDMMEEQLANYDAAMEDPDKAIDLLTTYVDENMTTLTMSEMVLD 875

Query: 729  GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG-------- 780
            GF    EP +R +L   RA  +  L+EKAR+ V  G +++GC+DE G L G         
Sbjct: 876  GFMETREPFVRSLLQLWRAWSIKALKEKARLVVKKGAFVLGCVDETGTLRGHSRATEGTK 935

Query: 781  ------------QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDI 828
                        Q F+QV +   G  +             +VI G  ++ +NP LHPGDI
Sbjct: 936  NQPKEVRRDQLPQIFLQVPDHENGGTY-------------KVITGLCLVGRNPSLHPGDI 982

Query: 829  RILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPP 888
            R++EAVD P+L HL D +VFP +GDR   +  SG DLDGD YFV WDE L  P + S+PP
Sbjct: 983  RMVEAVDVPQLRHLRDVVVFPLQGDRDVPSMCSGGDLDGDDYFVIWDEKLF-PKEWSYPP 1041

Query: 889  MEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLA 948
            M Y A +A      +   ++ EFF   M N+ L  I +AH+  AD    GA  E C+ LA
Sbjct: 1042 MNYEAPKAPEEKEVMVANNLAEFFVLFMKNDRLPLIAHAHLATADKHPEGAKTEKCLELA 1101

Query: 949  ELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDI 1008
            +L +TAVD+ KTG        L P+ YP FM K   ++Y S  +LG+LY    D  +  +
Sbjct: 1102 QLHSTAVDYVKTGVAAKWEKRLDPRTYPHFMEKSRARTYYSKSVLGQLY----DMVERQV 1157

Query: 1009 SVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTG 1068
                E    P D       E+ +  D +  A   K  YD  +  ++ Q ++  E E+ T 
Sbjct: 1158 FDIQENYKLPFDERIIKRYELND--DLLRQARKLKSQYDIAMRRIMGQLEIRTEFEVWTA 1215

Query: 1069 HIWSMPKYNSRKQGELKERLKHSYSALRKEFRQV------------FEKMD----SDCEL 1112
             + S P+  +  +  ++E++    + L+K+FR +            FEK+     +   +
Sbjct: 1216 FVMSKPRVGTDYK--VQEKVGREAACLKKQFRDLCLKAAGASDRGDFEKLGPFVAAMYRV 1273

Query: 1113 LSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARI 1170
              E+ + AL+E +     Q    P+    ++ L+ + +ARS+ L+SF W+    L RI
Sbjct: 1274 TCEEIRIALYEAR-----QPHRRPD---GTMGLR-KITARSMPLISFPWLFPAELGRI 1322


>gi|156035913|ref|XP_001586068.1| hypothetical protein SS1G_13161 [Sclerotinia sclerotiorum 1980]
 gi|154698565|gb|EDN98303.1| hypothetical protein SS1G_13161 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1404

 Score =  418 bits (1074), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 282/800 (35%), Positives = 417/800 (52%), Gaps = 97/800 (12%)

Query: 414  RRLVITPTKAYCLPPEVELSNRVLRKY--KDLADRFLRVTFMDEGLQTMNANVLSYFIAP 471
            R+  +TP+  Y   P VE +NRVLR Y  ++   RFLRV F DE  +             
Sbjct: 452  RKATVTPSSIYFSSPTVETTNRVLRNYSKENKEGRFLRVQFTDEKAEG------------ 499

Query: 472  IVRDITLNSFSQKTR---VFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDG 528
                  +N+ + K R   +F RV  ++S G  +  R + FLAF +SQ R+  A+FF    
Sbjct: 500  -----RINACADKIRNDGLFTRVFRVISNGIRIGDRHYEFLAFGNSQFRENGAYFFCPPA 554

Query: 529  KTSVLDIKKWMGRFTDKNI-AKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFS 587
              S  DI++WMG F+  N+ AK AAR+GQCFS+T A   +   ++  ++PDI+RNGY F+
Sbjct: 555  YLSCDDIRQWMGTFSHINVVAKYAARLGQCFSTTRAIRGLSAPDL-VKIPDIERNGYCFT 613

Query: 588  DGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP-AKGDGIRMSLRESMN 646
            DG+GKI+P LA  +A++LKL  N  P A+Q R  GCKG++   P AK + +   +R+S  
Sbjct: 614  DGVGKISPFLAQMIAEELKLRTNSAPSAFQFRLGGCKGILVVSPDAKNNEVH--IRKSQQ 671

Query: 647  KFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDV 706
            KF + +  LEI   ++F    LNRQ IT+LS+L V DE+F +M    LS     + ++ +
Sbjct: 672  KFTAVYNGLEIIRCSQFSSATLNRQTITILSSLGVKDEVFLNMLSEQLSDYQNAMSNNTI 731

Query: 707  AFEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAG 764
            A  +L     +   T  I  M+  GF  + EP +  +L   RA  +  L+EKA+I V  G
Sbjct: 732  ALNLLNRYIDDNYMTINIASMILNGFMTEKEPFVLSLLHLWRAWSIKLLKEKAKIIVENG 791

Query: 765  RWLMGCLDELGVLEGGQ-----CFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAK 819
             +++GC+DE   L G       C     E  L   F +  +R   T +  VI+G  ++ +
Sbjct: 792  AFVLGCVDETNTLRGYTKPTVACGTTYKEDELPQIFIQVPNR-ENTGQYNVIEGICLVGR 850

Query: 820  NPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
            NP LHPGD+R+++AV+ P LHHL D +VFPQ G+R   +  SG DLDGD +FV WD+NL 
Sbjct: 851  NPSLHPGDLRVVQAVNVPALHHLRDVVVFPQSGERDVPSMCSGGDLDGDDFFVIWDKNL- 909

Query: 880  PPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGA 939
             PS+ +  PM Y A    TL RPV  RD+++FF K+M N++L TI +AH+  AD    G 
Sbjct: 910  QPSEWNCEPMSYAALAPVTLKRPVKVRDLLKFFVKYMKNDSLPTIAHAHLAQADLLGNGI 969

Query: 940  LDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKE---AYQSYKSNKILGRL 996
             D  C+ LAEL + AVD+ KTG+   M  +L P+ +P FM K      + Y S KILG+L
Sbjct: 970  KDPKCLELAELHSKAVDYVKTGQPANMSRYLAPQKWPHFMEKTHKPLSKQYHSTKILGQL 1029

Query: 997  YR---------QSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYD 1047
            Y          Q ++ +D+ I  + +++ NP+                +  A   K  YD
Sbjct: 1030 YDKVESLHFVPQYEEPFDKRILRAYKLE-NPI----------------LEAARQTKTKYD 1072

Query: 1048 GQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMD 1107
              +  +L Q  +  E E+ +  I S PK  S  +  L+E +     AL+  FR V     
Sbjct: 1073 TAMRRILAQQDIKTEFEVWSTFILSKPKVGSDYK--LQEEMASITGALKDRFRLV----- 1125

Query: 1108 SDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLD--LQEQDSAR------------- 1152
              C  ++  +  ++     +A Y+VT      K+ LD  L E  + R             
Sbjct: 1126 --CIDIAGGKDFSVLGPFVAAMYKVT------KEELDIALAECRTTRMVNGMEVPKRRMR 1177

Query: 1153 --SVVLLSFAWIANDYLARI 1170
              S+ L+SF W+    L RI
Sbjct: 1178 PDSMPLISFPWLFEKELGRI 1197


>gi|391863075|gb|EIT72389.1| RNA-directed RNA polymerase QDE-1 [Aspergillus oryzae 3.042]
          Length = 1458

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 285/815 (34%), Positives = 422/815 (51%), Gaps = 90/815 (11%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            + F++ + +   +  G +++  ++  F   L        V  L+H+ + K   +D  K  
Sbjct: 441  LPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHVSAKKQVYYDPMKIF 500

Query: 388  KLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRF 447
             L     +K     K P     +   R   ITP+  Y   P V++SNRV+R++ + ADRF
Sbjct: 501  DLK---FIKGVTQAKIPPYCCYMHSAR---ITPSTIYYNTPTVDISNRVIRRFIEHADRF 554

Query: 448  LRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFS 507
            LRV F DE L               +  I   + S    +F R++  L+ G  +  R++ 
Sbjct: 555  LRVRFTDEKL---------------LGRINSTTDSTMDEIFTRIKRALTNGIVIGDRRYE 599

Query: 508  FLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVE 566
            FLAF +SQ R+  A+FF+     +  +I+ WMG F   +N+AK AAR+GQCFS+T A   
Sbjct: 600  FLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAIAG 659

Query: 567  VPPTEVDPELPDIKRNGYVFSDGIGKITPDLA-MEVAQ-KLKLDVNPPPCAYQIRYAGCK 624
             P   V  ++ D++RNGY FSDG+G+I+  LA M +++ K+K     PP A+Q R  GCK
Sbjct: 660  CPVDVV--KIEDVERNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFRLGGCK 717

Query: 625  GVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDE 684
            G++A   ++     + +R+S  KF + H  LEI  W++F    LNRQ+I +LSTL +PD+
Sbjct: 718  GMLAV-SSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLGIPDQ 776

Query: 685  MFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGML 742
            +F +   +ML  L+Q L     A   L         T  I  M+  GF    EP L  +L
Sbjct: 777  VFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFLTSVL 836

Query: 743  TCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG--------------------GQC 782
            T  RA  L  L+EKARI V  G  L+GC+DE G+L+G                     + 
Sbjct: 837  TLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQGYFHDKVPGNDASVEEKTAALPEI 896

Query: 783  FIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
            F+QVS P                KK +VI+G  ++A+NP LHPGDIR++ AV+ P+L HL
Sbjct: 897  FVQVSRP-------------EADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHL 943

Query: 843  YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLT 900
             D +V PQ GDR   +  SG DLDGD Y V WD++L+P   K W   PM+Y + +A+ L 
Sbjct: 944  QDVVVLPQTGDRDIASMCSGGDLDGDDYIVIWDQDLLP---KDWFREPMKYTSNKAQDLD 1000

Query: 901  RPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKT 960
            R V   DI  FF  +M N+ L  I +AH+  AD  E G  +E CI LA+L + AVD+ KT
Sbjct: 1001 RDVTVNDITSFFVTYMKNDFLPRIAHAHLALADFLEDGVNEEKCIRLAQLHSDAVDYNKT 1060

Query: 961  GKIVTMPAHLKPKLYPDFM---GKEAYQSYKSNKILGRLYRQSKDAYDE-DISVSSEVDI 1016
            G    +  +L+P+ +P FM    K   + Y SNKILG+LY    DA +  D   S E+  
Sbjct: 1061 GIPAILTRNLEPRKWPHFMEKFNKPKDRIYHSNKILGQLY----DAVERIDFVPSLEM-- 1114

Query: 1017 NPVDIH-YDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWS--- 1072
             P D    + ++EVP+  D +  A N K  YD  +  ++ Q+++  E E     IWS   
Sbjct: 1115 -PFDKRLLNCEIEVPD--DLLTFAKNLKGQYDDAMRRIMAQHEIKTEFE-----IWSTFV 1166

Query: 1073 MPKYNSRKQGELKERLKHSYSALRKEF-RQVFEKM 1106
            +   N+ K  +  E +    + LR  F +Q +EK+
Sbjct: 1167 LGHANTSKDYKFHEEIGAISATLRDTFKKQCYEKV 1201


>gi|238505489|ref|XP_002383969.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus flavus
            NRRL3357]
 gi|220690083|gb|EED46433.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus flavus
            NRRL3357]
          Length = 1353

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 285/815 (34%), Positives = 422/815 (51%), Gaps = 90/815 (11%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            + F++ + +   +  G +++  ++  F   L        V  L+H+ + K   +D  K  
Sbjct: 336  LPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHVSAKKQVYYDPMKIF 395

Query: 388  KLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRF 447
             L     +K     K P     +   R   ITP+  Y   P V++SNRV+R++ + ADRF
Sbjct: 396  DLK---FIKGVTQAKIPPYCCYMHSAR---ITPSTIYYNTPTVDISNRVIRRFIEHADRF 449

Query: 448  LRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFS 507
            LRV F DE L               +  I   + S    +F R++  L+ G  +  R++ 
Sbjct: 450  LRVRFTDEKL---------------LGRINSTTDSTMDEIFTRIKRALTNGIVIGDRRYE 494

Query: 508  FLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVE 566
            FLAF +SQ R+  A+FF+     +  +I+ WMG F   +N+AK AAR+GQCFS+T A   
Sbjct: 495  FLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAIAG 554

Query: 567  VPPTEVDPELPDIKRNGYVFSDGIGKITPDLA-MEVAQ-KLKLDVNPPPCAYQIRYAGCK 624
             P   V  ++ D++RNGY FSDG+G+I+  LA M +++ K+K     PP A+Q R  GCK
Sbjct: 555  CPVDVV--KIEDVERNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFRLGGCK 612

Query: 625  GVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDE 684
            G++A   ++     + +R+S  KF + H  LEI  W++F    LNRQ+I +LSTL +PD+
Sbjct: 613  GMLAV-SSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLGIPDQ 671

Query: 685  MFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGML 742
            +F +   +ML  L+Q L     A   L         T  I  M+  GF    EP L  +L
Sbjct: 672  VFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFLTSVL 731

Query: 743  TCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG--------------------GQC 782
            T  RA  L  L+EKARI V  G  L+GC+DE G+L+G                     + 
Sbjct: 732  TLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQGYFHDKVPGNDASVEEKTAALPEI 791

Query: 783  FIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
            F+QVS P                KK +VI+G  ++A+NP LHPGDIR++ AV+ P+L HL
Sbjct: 792  FVQVSRP-------------EADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHL 838

Query: 843  YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLT 900
             D +V PQ GDR   +  SG DLDGD Y V WD++L+P   K W   PM+Y + +A+ L 
Sbjct: 839  QDVVVLPQTGDRDIASMCSGGDLDGDDYIVIWDQDLLP---KDWFREPMKYTSNKAQDLD 895

Query: 901  RPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKT 960
            R V   DI  FF  +M N+ L  I +AH+  AD  E G  +E CI LA+L + AVD+ KT
Sbjct: 896  RDVTVNDITSFFVTYMKNDFLPRIAHAHLALADFLEDGVNEEKCIRLAQLHSDAVDYNKT 955

Query: 961  GKIVTMPAHLKPKLYPDFM---GKEAYQSYKSNKILGRLYRQSKDAYDE-DISVSSEVDI 1016
            G    +  +L+P+ +P FM    K   + Y SNKILG+LY    DA +  D   S E+  
Sbjct: 956  GIPAILTRNLEPRKWPHFMEKFNKPKDRIYHSNKILGQLY----DAVERIDFVPSLEM-- 1009

Query: 1017 NPVDIH-YDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWS--- 1072
             P D    + ++EVP+  D +  A N K  YD  +  ++ Q+++  E E     IWS   
Sbjct: 1010 -PFDKRLLNCEIEVPD--DLLTFAKNLKGQYDDAMRRIMAQHEIKTEFE-----IWSTFV 1061

Query: 1073 MPKYNSRKQGELKERLKHSYSALRKEF-RQVFEKM 1106
            +   N+ K  +  E +    + LR  F +Q +EK+
Sbjct: 1062 LGHANTSKDYKFHEEIGAISATLRDTFKKQCYEKV 1096


>gi|83773394|dbj|BAE63521.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 1458

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 285/815 (34%), Positives = 422/815 (51%), Gaps = 90/815 (11%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            + F++ + +   +  G +++  ++  F   L        V  L+H+ + K   +D  K  
Sbjct: 441  LPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHVSAKKQVYYDPMKIF 500

Query: 388  KLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRF 447
             L     +K     K P     +   R   ITP+  Y   P V++SNRV+R++ + ADRF
Sbjct: 501  DLK---FIKGVTQAKIPPYCCYMHSAR---ITPSTIYYNTPTVDISNRVIRRFIEHADRF 554

Query: 448  LRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFS 507
            LRV F DE L               +  I   + S    +F R++  L+ G  +  R++ 
Sbjct: 555  LRVRFTDEKL---------------LGRINSTTDSTMDEIFTRIKRALTNGIVIGDRRYE 599

Query: 508  FLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVE 566
            FLAF +SQ R+  A+FF+     +  +I+ WMG F   +N+AK AAR+GQCFS+T A   
Sbjct: 600  FLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAIAG 659

Query: 567  VPPTEVDPELPDIKRNGYVFSDGIGKITPDLA-MEVAQ-KLKLDVNPPPCAYQIRYAGCK 624
             P   V  ++ D++RNGY FSDG+G+I+  LA M +++ K+K     PP A+Q R  GCK
Sbjct: 660  CPVDVV--KIEDVERNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFRLGGCK 717

Query: 625  GVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDE 684
            G++A   ++     + +R+S  KF + H  LEI  W++F    LNRQ+I +LSTL +PD+
Sbjct: 718  GMLAV-SSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLGIPDQ 776

Query: 685  MFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGML 742
            +F +   +ML  L+Q L     A   L         T  I  M+  GF    EP L  +L
Sbjct: 777  VFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFLTSVL 836

Query: 743  TCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG--------------------GQC 782
            T  RA  L  L+EKARI V  G  L+GC+DE G+L+G                     + 
Sbjct: 837  TLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQGYFHDKVPGNDASVEEKTAALPEI 896

Query: 783  FIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
            F+QVS P                KK +VI+G  ++A+NP LHPGDIR++ AV+ P+L HL
Sbjct: 897  FVQVSRP-------------EADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHL 943

Query: 843  YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLT 900
             D +V PQ GDR   +  SG DLDGD Y V WD++L+P   K W   PM+Y + +A+ L 
Sbjct: 944  QDVVVLPQTGDRDIASMCSGGDLDGDDYIVIWDQDLLP---KDWFREPMKYTSNKAQDLD 1000

Query: 901  RPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKT 960
            R V   DI  FF  +M N+ L  I +AH+  AD  E G  +E CI LA+L + AVD+ KT
Sbjct: 1001 RDVTVNDITSFFVTYMKNDFLPRIAHAHLALADFLEDGVNEEKCIRLAQLHSDAVDYNKT 1060

Query: 961  GKIVTMPAHLKPKLYPDFM---GKEAYQSYKSNKILGRLYRQSKDAYDE-DISVSSEVDI 1016
            G    +  +L+P+ +P FM    K   + Y SNKILG+LY    DA +  D   S E+  
Sbjct: 1061 GIPAILTRNLEPRKWPHFMEKFNKPKDRIYHSNKILGQLY----DAVERIDFVPSLEM-- 1114

Query: 1017 NPVDIH-YDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWS--- 1072
             P D    + ++EVP+  D +  A N K  YD  +  ++ Q+++  E E     IWS   
Sbjct: 1115 -PFDKRLLNCEIEVPD--DLLTFAKNLKGQYDDAMRRIMAQHEIKTEFE-----IWSTFV 1166

Query: 1073 MPKYNSRKQGELKERLKHSYSALRKEF-RQVFEKM 1106
            +   N+ K  +  E +    + LR  F +Q +EK+
Sbjct: 1167 LGHANTSKDYKFHEEIGAISATLRDTFKKQCYEKV 1201


>gi|212544602|ref|XP_002152455.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces marneffei
            ATCC 18224]
 gi|210065424|gb|EEA19518.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces marneffei
            ATCC 18224]
          Length = 1359

 Score =  414 bits (1065), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 294/881 (33%), Positives = 437/881 (49%), Gaps = 90/881 (10%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSD-SFFDLLRGQSREVNVAALKHIYSYKWPVFDACKR 386
            + F I + +   +  G I+++  S   F   L+       +  L+H+ + K   +DA K 
Sbjct: 435  LPFAIRYQLEVCISHGYISEYTASKPEFVQRLKDMEERKALTLLEHVATDKKIYWDAMKI 494

Query: 387  LKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADR 446
              ++       P+             +R   +TP+  Y   P +E++NRVLR+Y + ADR
Sbjct: 495  FDILF------PKGVTRRNIPSYCCMIRTATVTPSTIYWNTPSMEITNRVLRRYSEHADR 548

Query: 447  FLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKT--RVFKRVRSILSGGFYLCGR 504
            FLRV F DE  +                   +NS    T   +F R++  +S G  L  R
Sbjct: 549  FLRVRFKDEKFEG-----------------RINSTHHDTMDEIFARIKRTMSNGIILGDR 591

Query: 505  KFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYA 563
            K+ FLAF +SQ R+  A+FF+ +   +  +I+ WMG F++ +NIAK AAR+GQCFS+T A
Sbjct: 592  KYEFLAFGNSQFREHGAYFFASEAHVTAANIRAWMGEFSEIRNIAKYAARLGQCFSTTRA 651

Query: 564  ----TVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV--NPPPCAYQ 617
                TVE+        +PD++R GY FSDG+G+I+  LA    Q+LK+      PP AYQ
Sbjct: 652  INTCTVELK------RIPDVERGGYTFSDGVGRISRFLAQMTQQELKIKTPDKEPPSAYQ 705

Query: 618  IRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLS 677
             R  GCKG++        G  + +R S  KF ++H  LEI  W++F    LNRQ+I +LS
Sbjct: 706  FRLGGCKGMLVLSDVPR-GREIQIRPSQEKFPANHQGLEIIRWSQFSSATLNRQLIAVLS 764

Query: 678  TLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTE 735
            +L V DE+F      M+S L +   D   A  +L         T  +  M+S GF    +
Sbjct: 765  SLGVSDEVFHEKLRRMVSNLEEATRDDRAAMRLLQKYIDPNEMTLVLSKMVSDGFLQSRD 824

Query: 736  PHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLG--N 793
            P +  ++T  +A  +  L+EKA+I +  G  L+G LDE   L+G   + +V +P L   +
Sbjct: 825  PFVTSIITLWKAWSIKYLKEKAKITIEDGACLLGVLDETATLQGF-SYEKVKKPHLSRES 883

Query: 794  CFSKHGSRF-----AETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVF 848
                    F     A+ KK  VIKG  ++A+NP LHPGDIR++ AVD PEL HL D +V 
Sbjct: 884  KLDALPEIFLQVYRADEKKYCVIKGVCILARNPSLHPGDIRVVRAVDRPELAHLKDVVVL 943

Query: 849  PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTRPVDQR 906
            PQ GDR   +  SG DLDGD Y V WD++L+P     W   PM+Y   +   L R V   
Sbjct: 944  PQLGDRDIASMCSGGDLDGDDYLVIWDKDLVP---NQWFRAPMDYAPIKGVNLDRSVTVN 1000

Query: 907  DIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTM 966
            DI  FF  +M N++L  I +AH+  +D    G     CI LA+L + AVD+ KTG+   +
Sbjct: 1001 DITTFFVNYMKNDSLPRIAHAHLAWSDFLMNGVESPKCIRLAQLHSNAVDYNKTGEPAYL 1060

Query: 967  PAHLKPKLYPDFMGKEAY---QSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHY 1023
            P  L+P+ +P FM K      Q+Y+S KILG+LY    DA D        VD +P D   
Sbjct: 1061 PRDLRPRRWPHFMEKNYKPKDQTYQSKKILGQLY----DAVD-------RVDFHP-DFDV 1108

Query: 1024 DTDLEVPESVDFIADAWNQ-----KCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNS 1078
              D  V ES   + D   Q     K  YD  L  ++ Q+++  E E+ +  + S    N 
Sbjct: 1109 PFDKRVLESGVSVTDNIMQFARELKVDYDLALKRIMAQHEIRTEFEVWSTFVLS--HANL 1166

Query: 1079 RKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYH--- 1135
             K  +  E L     AL++ F++       +C            +  A A Y VT     
Sbjct: 1167 SKDYKFHEELGGITKALKERFQK-------ECYDKVGGRDFNHIKPMAVAIYSVTNDEVN 1219

Query: 1136 ---PEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIR 1173
                E+ K + D + +    ++ ++SFAW+  D L R+ +R
Sbjct: 1220 AALAEFRKNNPDTKIKPEPENLPMISFAWLFPDVLGRVALR 1260


>gi|317151427|ref|XP_001824654.2| RNA-directed RNA polymerase (Sad-1) [Aspergillus oryzae RIB40]
          Length = 1403

 Score =  414 bits (1065), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 285/815 (34%), Positives = 422/815 (51%), Gaps = 90/815 (11%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            + F++ + +   +  G +++  ++  F   L        V  L+H+ + K   +D  K  
Sbjct: 386  LPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHVSAKKQVYYDPMKIF 445

Query: 388  KLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRF 447
             L     +K     K P     +   R   ITP+  Y   P V++SNRV+R++ + ADRF
Sbjct: 446  DLK---FIKGVTQAKIPPYCCYMHSAR---ITPSTIYYNTPTVDISNRVIRRFIEHADRF 499

Query: 448  LRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFS 507
            LRV F DE L               +  I   + S    +F R++  L+ G  +  R++ 
Sbjct: 500  LRVRFTDEKL---------------LGRINSTTDSTMDEIFTRIKRALTNGIVIGDRRYE 544

Query: 508  FLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVE 566
            FLAF +SQ R+  A+FF+     +  +I+ WMG F   +N+AK AAR+GQCFS+T A   
Sbjct: 545  FLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAIAG 604

Query: 567  VPPTEVDPELPDIKRNGYVFSDGIGKITPDLA-MEVAQ-KLKLDVNPPPCAYQIRYAGCK 624
             P   V  ++ D++RNGY FSDG+G+I+  LA M +++ K+K     PP A+Q R  GCK
Sbjct: 605  CPVDVV--KIEDVERNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFRLGGCK 662

Query: 625  GVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDE 684
            G++A   ++     + +R+S  KF + H  LEI  W++F    LNRQ+I +LSTL +PD+
Sbjct: 663  GMLAV-SSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLGIPDQ 721

Query: 685  MFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGML 742
            +F +   +ML  L+Q L     A   L         T  I  M+  GF    EP L  +L
Sbjct: 722  VFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFLTSVL 781

Query: 743  TCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG--------------------GQC 782
            T  RA  L  L+EKARI V  G  L+GC+DE G+L+G                     + 
Sbjct: 782  TLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQGYFHDKVPGNDASVEEKTAALPEI 841

Query: 783  FIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
            F+QVS P                KK +VI+G  ++A+NP LHPGDIR++ AV+ P+L HL
Sbjct: 842  FVQVSRP-------------EADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHL 888

Query: 843  YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLT 900
             D +V PQ GDR   +  SG DLDGD Y V WD++L+P   K W   PM+Y + +A+ L 
Sbjct: 889  QDVVVLPQTGDRDIASMCSGGDLDGDDYIVIWDQDLLP---KDWFREPMKYTSNKAQDLD 945

Query: 901  RPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKT 960
            R V   DI  FF  +M N+ L  I +AH+  AD  E G  +E CI LA+L + AVD+ KT
Sbjct: 946  RDVTVNDITSFFVTYMKNDFLPRIAHAHLALADFLEDGVNEEKCIRLAQLHSDAVDYNKT 1005

Query: 961  GKIVTMPAHLKPKLYPDFM---GKEAYQSYKSNKILGRLYRQSKDAYDE-DISVSSEVDI 1016
            G    +  +L+P+ +P FM    K   + Y SNKILG+LY    DA +  D   S E+  
Sbjct: 1006 GIPAILTRNLEPRKWPHFMEKFNKPKDRIYHSNKILGQLY----DAVERIDFVPSLEM-- 1059

Query: 1017 NPVDIH-YDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWS--- 1072
             P D    + ++EVP+  D +  A N K  YD  +  ++ Q+++  E E     IWS   
Sbjct: 1060 -PFDKRLLNCEIEVPD--DLLTFAKNLKGQYDDAMRRIMAQHEIKTEFE-----IWSTFV 1111

Query: 1073 MPKYNSRKQGELKERLKHSYSALRKEF-RQVFEKM 1106
            +   N+ K  +  E +    + LR  F +Q +EK+
Sbjct: 1112 LGHANTSKDYKFHEEIGAISATLRDTFKKQCYEKV 1146


>gi|389646751|ref|XP_003721007.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae 70-15]
 gi|351638399|gb|EHA46264.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae 70-15]
          Length = 1407

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 272/779 (34%), Positives = 410/779 (52%), Gaps = 51/779 (6%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
             R++ +TP+  Y   P VE +NRVLR Y +  DRFLRV F DE               P 
Sbjct: 456  TRKVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDE--------------LPT 501

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
             R    N       +F RV  +L  G ++  R + FLAF SSQ+R+ S +FF + G  + 
Sbjct: 502  GRLHAPNDLGADDEIFSRVYRVLKNGIHIGDRHYKFLAFGSSQMRENSTYFFCDAGDVTC 561

Query: 533  LDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIG 591
              I+ WMGRF+  +N+ K AAR+GQCFS+T +   V    +   +PDI++NGY F+DG+G
Sbjct: 562  DSIRAWMGRFSHIRNVGKYAARLGQCFSTTRSIDRVAMPWIK-TIPDIEKNGYCFTDGVG 620

Query: 592  KITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP-AKGDGIRMSLRESMNKFQS 650
            KI+   A+ +++ LKLD  P   A+Q R  GCKGV+  W   KG  I   +R S  KF++
Sbjct: 621  KISSLWAVVISENLKLDYIP--SAFQFRMGGCKGVLVVWEDVKGQEIH--IRPSQLKFET 676

Query: 651  HHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEV 710
             H+ LE+   + F    LNRQ I++L++L V +E+F SM    L+K N+ + D+  A  +
Sbjct: 677  DHSRLEVIRCSHFSVASLNRQTISVLTSLGVKNEVFESMLAEQLAKYNRAMEDATAAMTL 736

Query: 711  LTAACAEQ--GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLM 768
            LT    E    NT A ++ AGF    EP +  ML   R   +  L+EKAR+ V  G +++
Sbjct: 737  LTQYVDENQMTNTLARLVKAGFMESHEPFVCTMLRLWRTWSVKTLKEKARLVVEKGAFVL 796

Query: 769  GCLDELGVLEGGQCFIQVS---EPFLGNCFSKHGSRFAE-----TKKLQVIKGFVVIAKN 820
            GC+DE   L G    I  S    P L N   K    F +     ++  +VI G  ++ +N
Sbjct: 797  GCVDETKTLHGHFTHIPASPNQRPRL-NGNMKLPEIFLQVPDGPSRDYKVITGLCLVGRN 855

Query: 821  PCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP 880
            P LHPGDIR+++A+D P+L H+ D +VF Q GDR      SG DLDGD +FV WDE L+P
Sbjct: 856  PSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDRDIPGMCSGGDLDGDDFFVLWDERLLP 915

Query: 881  -PSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGA 939
             PS++++ P  Y+   A+ L R V   D+ +FF  +M N +L  I +AH+  AD  +YGA
Sbjct: 916  LPSQRNYKPASYHPPPARELDREVTADDLCQFFVTYMKNFSLPRIAHAHLAQAD--KYGA 973

Query: 940  LDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQ 999
             DE C+ LA L + AVD+PKTG    +   L P  +P FM K A   Y S KILG+LY Q
Sbjct: 974  KDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMPNEFPHFMEK-ARGRYHSRKILGKLYDQ 1032

Query: 1000 SKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKV 1059
             K   +   +     D+  + ++ +           + +A   K  YD  +  ++ Q+++
Sbjct: 1033 VKPV-NFHPAYEMPFDVKILSLYGELSQHGDLGPKLLREARKLKTLYDQSIMRIMGQHEI 1091

Query: 1060 NREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQ----VFEKMDSDCELLSE 1115
              E E+ +  + S  +  S  Q +L E +    + L+  FR+      E +     +   
Sbjct: 1092 ATEFEVFSAFVLSSRRVGS--QYKLGEIVGQQSATLKTVFREKCIAALETVSGRTGIKPR 1149

Query: 1116 DEKNALFERKASAWYQVTYHPEWVKKSLDLQE----QDSARSVVLLSFAWIANDYLARI 1170
            D +   F     A Y+VT   E +K +L   +    + + +S+ L++F WI +  L ++
Sbjct: 1150 DIEA--FGPFVVAMYKVT--DEEIKIALHECKTRGVKANPKSMPLITFPWIFDQILVQL 1204


>gi|86196450|gb|EAQ71088.1| hypothetical protein MGCH7_ch7g495 [Magnaporthe oryzae 70-15]
          Length = 1952

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 272/779 (34%), Positives = 410/779 (52%), Gaps = 51/779 (6%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
             R++ +TP+  Y   P VE +NRVLR Y +  DRFLRV F DE               P 
Sbjct: 1001 TRKVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDE--------------LPT 1046

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
             R    N       +F RV  +L  G ++  R + FLAF SSQ+R+ S +FF + G  + 
Sbjct: 1047 GRLHAPNDLGADDEIFSRVYRVLKNGIHIGDRHYKFLAFGSSQMRENSTYFFCDAGDVTC 1106

Query: 533  LDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIG 591
              I+ WMGRF+  +N+ K AAR+GQCFS+T +   V    +   +PDI++NGY F+DG+G
Sbjct: 1107 DSIRAWMGRFSHIRNVGKYAARLGQCFSTTRSIDRVAMPWIK-TIPDIEKNGYCFTDGVG 1165

Query: 592  KITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP-AKGDGIRMSLRESMNKFQS 650
            KI+   A+ +++ LKLD  P   A+Q R  GCKGV+  W   KG  I   +R S  KF++
Sbjct: 1166 KISSLWAVVISENLKLDYIP--SAFQFRMGGCKGVLVVWEDVKGQEIH--IRPSQLKFET 1221

Query: 651  HHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEV 710
             H+ LE+   + F    LNRQ I++L++L V +E+F SM    L+K N+ + D+  A  +
Sbjct: 1222 DHSRLEVIRCSHFSVASLNRQTISVLTSLGVKNEVFESMLAEQLAKYNRAMEDATAAMTL 1281

Query: 711  LTAACAEQ--GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLM 768
            LT    E    NT A ++ AGF    EP +  ML   R   +  L+EKAR+ V  G +++
Sbjct: 1282 LTQYVDENQMTNTLARLVKAGFMESHEPFVCTMLRLWRTWSVKTLKEKARLVVEKGAFVL 1341

Query: 769  GCLDELGVLEGGQCFIQVS---EPFLGNCFSKHGSRFAE-----TKKLQVIKGFVVIAKN 820
            GC+DE   L G    I  S    P L N   K    F +     ++  +VI G  ++ +N
Sbjct: 1342 GCVDETKTLHGHFTHIPASPNQRPRL-NGNMKLPEIFLQVPDGPSRDYKVITGLCLVGRN 1400

Query: 821  PCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP 880
            P LHPGDIR+++A+D P+L H+ D +VF Q GDR      SG DLDGD +FV WDE L+P
Sbjct: 1401 PSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDRDIPGMCSGGDLDGDDFFVLWDERLLP 1460

Query: 881  -PSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGA 939
             PS++++ P  Y+   A+ L R V   D+ +FF  +M N +L  I +AH+  AD  +YGA
Sbjct: 1461 LPSQRNYKPASYHPPPARELDREVTADDLCQFFVTYMKNFSLPRIAHAHLAQAD--KYGA 1518

Query: 940  LDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQ 999
             DE C+ LA L + AVD+PKTG    +   L P  +P FM K A   Y S KILG+LY Q
Sbjct: 1519 KDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMPNEFPHFMEK-ARGRYHSRKILGKLYDQ 1577

Query: 1000 SKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKV 1059
             K   +   +     D+  + ++ +           + +A   K  YD  +  ++ Q+++
Sbjct: 1578 VKPV-NFHPAYEMPFDVKILSLYGELSQHGDLGPKLLREARKLKTLYDQSIMRIMGQHEI 1636

Query: 1060 NREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQ----VFEKMDSDCELLSE 1115
              E E+ +  + S  +  S  Q +L E +    + L+  FR+      E +     +   
Sbjct: 1637 ATEFEVFSAFVLSSRRVGS--QYKLGEIVGQQSATLKTVFREKCIAALETVSGRTGIKPR 1694

Query: 1116 DEKNALFERKASAWYQVTYHPEWVKKSLDLQE----QDSARSVVLLSFAWIANDYLARI 1170
            D +   F     A Y+VT   E +K +L   +    + + +S+ L++F WI +  L ++
Sbjct: 1695 DIE--AFGPFVVAMYKVT--DEEIKIALHECKTRGVKANPKSMPLITFPWIFDQILVQL 1749


>gi|440466934|gb|ELQ36175.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae Y34]
 gi|440478755|gb|ELQ59556.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae P131]
          Length = 1977

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 272/779 (34%), Positives = 410/779 (52%), Gaps = 51/779 (6%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
             R++ +TP+  Y   P VE +NRVLR Y +  DRFLRV F DE               P 
Sbjct: 1026 TRKVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDE--------------LPT 1071

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
             R    N       +F RV  +L  G ++  R + FLAF SSQ+R+ S +FF + G  + 
Sbjct: 1072 GRLHAPNDLGADDEIFSRVYRVLKNGIHIGDRHYKFLAFGSSQMRENSTYFFCDAGDVTC 1131

Query: 533  LDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIG 591
              I+ WMGRF+  +N+ K AAR+GQCFS+T +   V    +   +PDI++NGY F+DG+G
Sbjct: 1132 DSIRAWMGRFSHIRNVGKYAARLGQCFSTTRSIDRVAMPWIK-TIPDIEKNGYCFTDGVG 1190

Query: 592  KITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP-AKGDGIRMSLRESMNKFQS 650
            KI+   A+ +++ LKLD    P A+Q R  GCKGV+  W   KG  I   +R S  KF++
Sbjct: 1191 KISSLWAVVISENLKLDY--IPSAFQFRMGGCKGVLVVWEDVKGQEIH--IRPSQLKFET 1246

Query: 651  HHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEV 710
             H+ LE+   + F    LNRQ I++L++L V +E+F SM    L+K N+ + D+  A  +
Sbjct: 1247 DHSRLEVIRCSHFSVASLNRQTISVLTSLGVKNEVFESMLAEQLAKYNRAMEDATAAMTL 1306

Query: 711  LTAACAEQ--GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLM 768
            LT    E    NT A ++ AGF    EP +  ML   R   +  L+EKAR+ V  G +++
Sbjct: 1307 LTQYVDENQMTNTLARLVKAGFMESHEPFVCTMLRLWRTWSVKTLKEKARLVVEKGAFVL 1366

Query: 769  GCLDELGVLEGGQCFIQVS---EPFLGNCFSKHGSRFAE-----TKKLQVIKGFVVIAKN 820
            GC+DE   L G    I  S    P L N   K    F +     ++  +VI G  ++ +N
Sbjct: 1367 GCVDETKTLHGHFTHIPASPNQRPRL-NGNMKLPEIFLQVPDGPSRDYKVITGLCLVGRN 1425

Query: 821  PCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP 880
            P LHPGDIR+++A+D P+L H+ D +VF Q GDR      SG DLDGD +FV WDE L+P
Sbjct: 1426 PSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDRDIPGMCSGGDLDGDDFFVLWDERLLP 1485

Query: 881  -PSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGA 939
             PS++++ P  Y+   A+ L R V   D+ +FF  +M N +L  I +AH+  AD  +YGA
Sbjct: 1486 LPSQRNYKPASYHPPPARELDREVTADDLCQFFVTYMKNFSLPRIAHAHLAQAD--KYGA 1543

Query: 940  LDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQ 999
             DE C+ LA L + AVD+PKTG    +   L P  +P FM K A   Y S KILG+LY Q
Sbjct: 1544 KDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMPNEFPHFMEK-ARGRYHSRKILGKLYDQ 1602

Query: 1000 SKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKV 1059
             K   +   +     D+  + ++ +           + +A   K  YD  +  ++ Q+++
Sbjct: 1603 VK-PVNFHPAYEMPFDVKILSLYGELSQHGDLGPKLLREARKLKTLYDQSIMRIMGQHEI 1661

Query: 1060 NREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQ----VFEKMDSDCELLSE 1115
              E E+ +  + S  +  S  Q +L E +    + L+  FR+      E +     +   
Sbjct: 1662 ATEFEVFSAFVLSSRRVGS--QYKLGEIVGQQSATLKTVFREKCIAALETVSGRTGIKPR 1719

Query: 1116 DEKNALFERKASAWYQVTYHPEWVKKSLDLQE----QDSARSVVLLSFAWIANDYLARI 1170
            D +   F     A Y+VT   E +K +L   +    + + +S+ L++F WI +  L ++
Sbjct: 1720 DIE--AFGPFVVAMYKVT--DEEIKIALHECKTRGVKANPKSMPLITFPWIFDQILVQL 1774


>gi|260801457|ref|XP_002595612.1| hypothetical protein BRAFLDRAFT_64722 [Branchiostoma floridae]
 gi|229280859|gb|EEN51624.1| hypothetical protein BRAFLDRAFT_64722 [Branchiostoma floridae]
          Length = 1207

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 273/781 (34%), Positives = 391/781 (50%), Gaps = 102/781 (13%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            VRR+++TPT    L PE+   NR+LR Y +  + FLRV+F+DEG Q +   + +      
Sbjct: 287  VRRVIVTPTTLLFLQPEIMFENRMLRDYGE--EFFLRVSFLDEGFQKLQGGIATGL---- 340

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
                      ++  +F RVR++L  G  +  R + FLA S+SQLR    WFFS+DGK + 
Sbjct: 341  ----------EEEDIFARVRNVLQTGVRVGERYYRFLAASNSQLRQHGVWFFSDDGKNTA 390

Query: 533  LDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVE------VPPTEVDPELPDIKRNGYV 585
              I+  MG F+  +  A   ARMGQCFS+T  TV       V  +++      + R  Y 
Sbjct: 391  ESIRAEMGDFSGCRCPATYLARMGQCFSTTEPTVANVGNNAVEISDITGGYDPVNRKPYC 450

Query: 586  FSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESM 645
            FSDGIGKI+ DLA +                                   G  M  R SM
Sbjct: 451  FSDGIGKISKDLARK-----------------------------------GEIMQYRSSM 475

Query: 646  NKFQSHHTTLEICSWTRFQPG--FLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVD 703
            NKF S H  +EIC  T   PG  FLNRQ+IT+LS L VPD +F  +Q   L +L  M + 
Sbjct: 476  NKFWSLHDVIEIC--TTSHPGRLFLNRQVITILSQLGVPDIVFQQLQQERLFELADMFLL 533

Query: 704  SDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA 763
               A E L      +G     +L  G    TEP  R ML  I  + +  +R +ARI +P 
Sbjct: 534  ETSAAEALCQRAQMKGLPYRRLLKMGVQLTTEPFFRSMLQKIYKSSVGEIRRRARIGIPP 593

Query: 764  --GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNP 821
              GR ++G LDE G LE GQ F+Q +E               +  K++V++G VV+ + P
Sbjct: 594  EYGRIMLGVLDETGTLEYGQVFVQYTEDIAN-----------QDGKVRVLEGDVVVTRTP 642

Query: 822  CLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI-- 879
            CLHPGD+R L+A+D P L+H+ D +VFP KG RPH NE +G DLDGD +FVTW  +LI  
Sbjct: 643  CLHPGDVRKLQAIDVPALYHMVDVIVFPAKGPRPHPNEMTGGDLDGDDFFVTWLPDLIFN 702

Query: 880  PPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGA 939
             P+++   PM + +   + +   V  + +I+F   ++ N+ LG I NAH+V AD    G 
Sbjct: 703  GPNEQ---PMHFRSPTKREVPN-VTIKHLIDFIVDYIKNDRLGLIANAHLVFADTEPMGI 758

Query: 940  LDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQ 999
              + C  LA   + AVDFPKTG    +    +P  YPDFMGK    + +S ++LG++YR+
Sbjct: 759  FSDVCQRLAVKHSDAVDFPKTGVCPDLDKTERPLEYPDFMGKRDKTTRRSERVLGKMYRE 818

Query: 1000 SKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKV 1059
             +    E++    E       +H D  L + E V ++  A   +  Y+ QL  L+ QY +
Sbjct: 819  CQ--MIENVCTQVERKGTVEQVHPDYGLVIGEHVSYVKKARRSRDRYNDQLRSLMAQYGI 876

Query: 1060 NREEELVTGHIWSMPKY--NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDE 1117
              E E V+G I  + K+  +  ++ E++   K     LRK  RQ F +     E +  D 
Sbjct: 877  ETESEAVSGCIVKLHKHMDDRYERYEIERVAKVRIEDLRKRTRQDFFEEFGGEESVELDH 936

Query: 1118 KNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREM 1177
             + L  +KASAWY VTY               S     LLSF W+  D L  + ++    
Sbjct: 937  PHVL--KKASAWYTVTY---------------SDPDAKLLSFPWVIGDILGILNLKTATT 979

Query: 1178 A 1178
            A
Sbjct: 980  A 980


>gi|115402503|ref|XP_001217328.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114189174|gb|EAU30874.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1309

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 289/875 (33%), Positives = 438/875 (50%), Gaps = 82/875 (9%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            + F + + +   +  G ++++ ++  F   L           L+H+ + K   +D  K  
Sbjct: 369  LPFSVRYQLEVCISNGYLSEYAMTREFAVKLSELGETQATKLLEHVATQKRVYYDPMKIF 428

Query: 388  KLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRF 447
             L     +K     K P        +R   +TP+  Y   P +++SNR++R Y + ADRF
Sbjct: 429  DLK---FIKGATNAKIPPYC---CYIRSARVTPSTVYYETPSMDMSNRIIRHYIEYADRF 482

Query: 448  LRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFS 507
            LRV F DE L               +   T N+  +   VF RV+  L+ G  +  R++ 
Sbjct: 483  LRVRFTDEKLLGR------------IYSTTDNTMDE---VFTRVKRALANGIVIGDRRYE 527

Query: 508  FLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVE 566
            FLAF +SQ R+  A+FF+     +  +I+ WMG F D +N+AK AAR+GQCFS+T A   
Sbjct: 528  FLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFDDIRNVAKHAARLGQCFSTTRAIFG 587

Query: 567  VPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV--NPPPCAYQIRYAGCK 624
             P  +V  E+ DI RNGY FSDG+G+I+  LA  V  +LK+      PP  +Q R  GCK
Sbjct: 588  CP-IKVQ-EIDDIVRNGYRFSDGVGRISKFLAQMVMSELKIKTPSGEPPSVFQFRLGGCK 645

Query: 625  GVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDE 684
            G++   P +     + +R+S  KF + H  LEI  W++F    LNRQ+I +LSTL + D 
Sbjct: 646  GILTVSP-QAQRQEVHIRKSQAKFTATHNGLEIIRWSQFTAASLNRQLIIVLSTLGIRDR 704

Query: 685  MFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGML 742
            +F     ++L  LN+ L +   A  +L         T  I  M+  GF    EP    +L
Sbjct: 705  IFHEKLRAVLWGLNEALKNDAKAIHLLRRYVDPNQRTLTISQMVVDGFRRTEEPFATSVL 764

Query: 743  TCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG-------------GQCFIQVSEP 789
            T  RA  L  L++KA+I +  G  + GC+DE G L+G              Q F  + E 
Sbjct: 765  TLWRAWHLKYLKDKAKITIDKGACVFGCMDETGTLKGYFHEKIPDRDAPFEQRFAALPEI 824

Query: 790  FLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFP 849
            FL       G ++      +VI+G  ++A+NP LH GDIR+++AVD P L HL D +V P
Sbjct: 825  FLQIPNQDKGGKY------EVIQGMCILARNPSLHSGDIRVVKAVDVPALRHLQDVVVLP 878

Query: 850  QKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRD 907
            Q GDR   +  SG DLDGD Y V WD++LIP   K W  PPM Y   +A+ L R V   +
Sbjct: 879  QTGDRDIASMCSGGDLDGDDYVVIWDQDLIP---KDWFRPPMNYTTNKARDLDRDVTVDE 935

Query: 908  IIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMP 967
            I  FF  +M N+ L TI +AH+  AD  + G  +E CI LA+L + AVD+ K G    M 
Sbjct: 936  ITSFFVTYMKNDCLPTIAHAHLAWADRLDNGVDEEKCIRLAQLHSDAVDYNKNGTPAHMT 995

Query: 968  AHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDL 1027
             +L+PKL+P FM K+  + YKS KILG+LY    DA  E ++    ++  P D     + 
Sbjct: 996  RNLEPKLWPHFMEKKTEKVYKSGKILGQLY----DAV-ERVNFVPSLE-KPFDRRI-LNS 1048

Query: 1028 EVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKER 1087
             +P + D    A + K  YD  L  ++ Q+++  E E+ +  + S    N  K  +  E 
Sbjct: 1049 RIPVAEDLYQFARDMKKDYDIALRRIMAQHEIKTEFEVWSTFVLS--HANMSKDYKFHEE 1106

Query: 1088 LKHSYSALRKEF-RQVFEKM-----DSDCEL------LSEDEKNALFERKASAWYQVTYH 1135
            +    S+LR+ F R+ ++K+     D    L      ++ +E NA  E+  + + +   +
Sbjct: 1107 IGMLSSSLREGFKRECYDKVGGRGFDRVAPLALAMYRITHEEMNAALEKHRAGFSEDAKN 1166

Query: 1136 PEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARI 1170
             +     +D         + L+SF WI    L +I
Sbjct: 1167 FQKTGPKMD--------QLPLISFPWIFPRVLGQI 1193


>gi|121704872|ref|XP_001270699.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus clavatus
            NRRL 1]
 gi|119398845|gb|EAW09273.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus clavatus
            NRRL 1]
          Length = 1428

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 273/758 (36%), Positives = 409/758 (53%), Gaps = 94/758 (12%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGL-QTMNANVLSYFIAP 471
            +R   ITPT  Y   P V++SNRV+R Y + ADRFLRV F DE L   +N+ +       
Sbjct: 496  MRSARITPTTIYYNTPSVDISNRVIRHYIEFADRFLRVRFTDEKLFGRINSTM------- 548

Query: 472  IVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTS 531
               D T++       VF R++  L+ G  +  R++ FLAF +SQ R+  A+FF+     +
Sbjct: 549  ---DDTMDE------VFTRIKRALANGIVVGDRRYEFLAFGNSQFREHGAYFFAPLPNLT 599

Query: 532  VLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGI 590
              +I+ WMG F D +N+AK AAR+GQCFS+T A +   P ++  ++ D+ RNGY FSDG+
Sbjct: 600  AANIRAWMGTFNDIRNVAKHAARLGQCFSTTRA-ISGCPVQIH-KIDDVVRNGYTFSDGV 657

Query: 591  GKITPDLAMEVAQKLKLD--VNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKF 648
            G+I+  LA  VA +LK+   ++ PP A+Q R  GCKG++   P +     + +R+S  KF
Sbjct: 658  GRISRFLAQMVASELKIKTPIDEPPSAFQFRLGGCKGMLTVSP-EAQRHEVHIRKSQYKF 716

Query: 649  QSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQ-MLVDSDVA 707
             + H  LEI  W++F    LNRQ+I +LS+L +PD++F     +ML  LN+ M  DS   
Sbjct: 717  AAAHNGLEIIRWSQFSMATLNRQLIIVLSSLGIPDQVFHEKLQAMLRSLNEAMESDSQAI 776

Query: 708  FEVLTAACAEQGN-TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRW 766
            + +       Q   T + M+  GF    EP +  +L   RA  L  L+EKA+I +  G  
Sbjct: 777  YWLKKYVDPNQMTLTVSQMVLDGFRRTQEPFVTSVLRLWRAWHLKYLKEKAKIAIDKGAN 836

Query: 767  LMGCLDELGVLEG-------------------GQCFIQVSEPFLGNCFSKHGSRFAETKK 807
            L+GC+DE G+L+G                    + F+Q+  P              E+ K
Sbjct: 837  LLGCMDETGILKGYFENVPAKDAPREKKLTSLPEVFVQILHP--------------ESGK 882

Query: 808  LQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDG 867
             Q+I+G  ++A+NP LHPGDIR++ AV+ PEL HL D +VFPQ GDR   +  SG DLDG
Sbjct: 883  YQIIEGVCILARNPSLHPGDIRVVRAVNVPELSHLKDVVVFPQTGDRDVPSMCSGGDLDG 942

Query: 868  DLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTIC 925
            D Y V WD++LIP   K W   PM+Y + +A+ L + V    I  FF  +M N+ L  I 
Sbjct: 943  DDYLVIWDQDLIP---KDWFRIPMKYTSDKAQDLNQDVTVDHITSFFVIYMKNDFLPRIA 999

Query: 926  NAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKE--- 982
            +AH+  AD  EYG  +  CI LA+L + AVD+ KTG+   M   L+PK++P FM K+   
Sbjct: 1000 HAHLAWADRLEYGVNEGKCIRLAQLHSDAVDYNKTGRPANMTRSLQPKMWPHFMEKKHKP 1059

Query: 983  AYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP-VDIHYDTDL---EVPESVDFIAD 1038
              + Y+S KILG+LY    DA +        VD  P +++ +D  +    +  S D +  
Sbjct: 1060 KERIYRSGKILGQLY----DAVE-------RVDFVPSLEMPFDERILKCRLQVSDDLMQT 1108

Query: 1039 AWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKE 1098
            A + K  YD  ++ ++ Q+++  E E+ +  + S    N  K  +  E L     +LR  
Sbjct: 1109 ARDLKADYDAAMHRIMAQHEIRTEFEVWSTFVLS--HANMSKDYKFHEELGMLSLSLRGI 1166

Query: 1099 FR-QVFEKMDSDC-ELLSEDEKNALFERKASAWYQVTY 1134
            +R + +EK+     ELL+           A A Y+VT+
Sbjct: 1167 YRKKCYEKVGGRSFELLAP---------LAVAMYRVTH 1195


>gi|296420862|ref|XP_002839987.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636195|emb|CAZ84178.1| unnamed protein product [Tuber melanosporum]
          Length = 1542

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 296/958 (30%), Positives = 467/958 (48%), Gaps = 132/958 (13%)

Query: 217  AILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGA------------- 263
            A L+ L S+P  W +  +  + +          + W R T  T   +             
Sbjct: 434  AFLIDLPSAPPFWRKLHNPRLSIDDRIKYWTSRNAWFRQTSITFDNSARKGLPISLEQRG 493

Query: 264  ----IGRCNSYRISISSRHRGK--LSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSD 317
                IGR  +YR  + ++  G    +++I+ L +  +++D      T+ E+ D   P+ D
Sbjct: 494  QTINIGRWTTYRFEVGTKEAGSDGFNEMISALKDFNIKLDVQKDFKTLSEKFD---PIWD 550

Query: 318  PFFCIHYEEGISF--------------EIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSR 363
                   +  +SF               + + +   +    ++++ ++  F D L    +
Sbjct: 551  YIRIKRIQSSVSFLDQLHQASSPLLSYPVRYQLEVCISHNCLSEYNITCEFIDRLAALPK 610

Query: 364  EVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKA 423
            E  +  L+HI   +   +D      +  + + K     K P   D    +R+  +TP+  
Sbjct: 611  EAAIPLLEHIAERRIRHYDPMDIFTI--QGVTKGTINLKLP---DHCQLLRKANVTPSTV 665

Query: 424  YCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQ 483
            Y   P VE++NRV+R+Y +  DRFLRV F+DE  Q                   +NS  +
Sbjct: 666  YFTTPTVEITNRVVRQYSEHIDRFLRVQFVDEKSQGR-----------------INSTDK 708

Query: 484  KT--RVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGR 541
            KT   VF RV++ L  G  +  RKF FLAF +SQ+R+  A+FF+ D   S  DI+ WMG 
Sbjct: 709  KTMHEVFTRVKAALDHGITIGDRKFEFLAFGNSQIREHGAYFFASDDHLSAADIRAWMGS 768

Query: 542  FTD-KNIAKCAARMGQCFSSTYAT----VEVPPTEVDPELPDI-KRNGYVFSDGIGKITP 595
            F++ + +AK AAR+GQCFS+T A     V+V  TE      DI    GY FSDG+GKI+ 
Sbjct: 769  FSEIRIVAKHAARLGQCFSTTRAINGVRVDVRTTE------DIVNAEGYNFSDGVGKISE 822

Query: 596  DLAMEVAQKLKL---DVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHH 652
             LA  +  +L+L   D  P P  +Q R  G KGV+A  P   +   + +R S  KF++ H
Sbjct: 823  FLARLITTELRLRLVDKEPVPSCFQFRLGGRKGVLAVSP-DANHREVYIRPSQLKFEARH 881

Query: 653  TTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT 712
              LE+  W++F    LNRQ+I +L++L  PD  F      ML      +VD  VA  +L 
Sbjct: 882  NILEVIRWSKFATAALNRQLIIVLTSLGAPDHYFEDKLQFMLKSYEVAMVDPGVAVRLLC 941

Query: 713  AACAEQGNTAAI--MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGC 770
                   +T AI  M+ AGF  + EP +  +L   RA  +  L+EKA+I +  G +++G 
Sbjct: 942  RNVDPNESTLAIAAMIRAGFMDRREPFVMSLLKLWRAWTIKYLKEKAKIMIEEGAFVLGV 1001

Query: 771  LDELGVLEG--------------------GQCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
            +DE G L+G                     Q F+QV++P           R  E++   +
Sbjct: 1002 VDETGTLDGYYYSQDEGSTEDADNPETSLPQIFLQVTDP----------DRPGESR---I 1048

Query: 811  IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
            I+G  VIA+NP LHPGD+R + AV+  ELHHL + +VF QKGDR   N  SG DLDGD Y
Sbjct: 1049 IEGPCVIARNPSLHPGDVRKVMAVNAKELHHLRNVVVFSQKGDRDLPNMLSGGDLDGDDY 1108

Query: 871  FVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVV 930
             + WD+ L      ++ PM Y+A   + L R V+  DI +FF  +M N+ LGTI NAH+ 
Sbjct: 1109 IIIWDKKLTS-CVNNYEPMNYSAQTPRELARDVEIGDITKFFVNYMKNDKLGTIANAHLA 1167

Query: 931  HADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSN 990
             AD  + G   + C  LA L + AVD+ K+G+   MP  L+ K +P FM K+  ++Y+S+
Sbjct: 1168 WADKRDEGVKSDECFRLAILHSHAVDYVKSGEPAIMPPELRRKTFPHFMEKKPEETYRSD 1227

Query: 991  KILGRLYRQSKDAYDEDISVSSEVDINP-VDIHYDTDL----EVPESVDFIADAWNQKCS 1045
            KILG LY              S++D  P +++ +D  +     + E +  +A A   K  
Sbjct: 1228 KILGVLY-----------DSVSKIDFVPALELEFDDRILNAYTLNEEILEVARAI--KIR 1274

Query: 1046 YDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVF 1103
            YD  +  ++ Q+ ++ E E+++  I+ M    + K  +  E +    + L+  F+++ 
Sbjct: 1275 YDAAMRRIMAQHDIHTEFEVIS--IFIMHHSMATKDYKFHEDIASVCNGLKDTFKKII 1330


>gi|326471540|gb|EGD95549.1| RNA-directed RNA polymerase [Trichophyton tonsurans CBS 112818]
          Length = 1605

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 269/802 (33%), Positives = 408/802 (50%), Gaps = 86/802 (10%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQT-MNANVLSYFIAP 471
            +R   +TP+  Y   P V+ SNRV+R Y + AD+FLRV F DE  +  +N+         
Sbjct: 616  MRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADKFLRVRFTDEKYEGRINS--------- 666

Query: 472  IVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTS 531
                 T N+   +  VF RV+  ++ G  +  R + FLAF +SQ R+  A+FF+     +
Sbjct: 667  -----TYNNCMDE--VFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPNLT 719

Query: 532  VLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGI 590
              +I+ WMG F+D K +AK AAR+G+CFS+T A    P T    E+ +++RNGY+FSDG+
Sbjct: 720  AANIRAWMGHFSDIKIVAKHAARLGRCFSTTRAVTGCPVTVR--EIDEVERNGYIFSDGV 777

Query: 591  GKITPDLAMEVAQKLKLDV--NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKF 648
            G+I+  LA  +  + KL      PP  +Q R  GCKG++   P +     + +R+S  KF
Sbjct: 778  GRISKFLAQMIMTEFKLQTPSEEPPSVFQFRLGGCKGILTVSP-EAQRREVHIRKSQYKF 836

Query: 649  QSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAF 708
             + H  LEI  W++F    LNRQ+I +LS L V DE+F      ML  + Q +     A 
Sbjct: 837  AAIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVSDEIFIQKLRLMLEDMEQAMTSETKAM 896

Query: 709  EVLTAACAEQGNTA--AIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRW 766
             +L         T   A M+  GF    +P ++ +L   RA Q+  L+EKA++F+  G  
Sbjct: 897  SMLQKRVDPNQMTLILAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGAC 956

Query: 767  LMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET----------KKLQVIKGFVV 816
            L GCLDE   L+G   + +   P +   + +      E           KK +VI+G  +
Sbjct: 957  LFGCLDETATLKG---YHEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCI 1013

Query: 817  IAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE 876
            +A+NP LHPGDIR++ AVD P LHHL D +VFPQ GDR   +  SG DLDGD Y V WD+
Sbjct: 1014 LARNPSLHPGDIRVVRAVDVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQ 1073

Query: 877  NLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADH 934
            +L+ P  K W   PM+Y A+ A++LTR V   DI  FF  +M N+ L  I +AH+  AD+
Sbjct: 1074 DLV-PLPKDWFREPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADY 1132

Query: 935  SEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKE---AYQSYKSNK 991
             E G  DE CI LA+L + AVD+ K+G    M   L P+ +P FM K+       Y+S K
Sbjct: 1133 LEDGVNDERCIQLAQLHSAAVDYNKSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYQSKK 1192

Query: 992  ILGRLYRQSKDAYDEDISVSSEVDINP-VDIHYDTDL---EVPESVDFIADAWNQKCSYD 1047
            ILG++Y            +   V+  P ++  +D  +   ++  S D +  A   K  YD
Sbjct: 1193 ILGQIY-----------DIVERVEFRPKLEAPFDERILNCDISVSEDMVLAAKKLKALYD 1241

Query: 1048 GQLNGLLEQYKVNREEELVTGHIWS---MPKYNSRKQGELKERLKHSYSALR-------- 1096
              +  ++ Q+++  E E     +WS   +   N  K  +  E L    SALR        
Sbjct: 1242 ADMRRIMAQHEIKTEFE-----VWSTFVLGHANMSKDYKFHEELGQISSALRDRFLSMCQ 1296

Query: 1097 -----KEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSA 1151
                 ++F+ +     +   + +++  +AL + ++S  + V      +KK       D  
Sbjct: 1297 DEAGGRDFQHLAPLAVAMYRVTAQEVADALGKEESSNGHDVG---NAIKKEYKHLRND-- 1351

Query: 1152 RSVVLLSFAWIANDYLARIKIR 1173
              + L+SF W+    L +I  R
Sbjct: 1352 -QIPLISFPWVLQPVLGKIANR 1372


>gi|302658845|ref|XP_003021121.1| hypothetical protein TRV_04770 [Trichophyton verrucosum HKI 0517]
 gi|291185002|gb|EFE40503.1| hypothetical protein TRV_04770 [Trichophyton verrucosum HKI 0517]
          Length = 1587

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 273/802 (34%), Positives = 405/802 (50%), Gaps = 86/802 (10%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQT-MNANVLSYFIAP 471
            +R   +TP+  Y   P V+ SNRV+R Y + ADRFLRV F DE  +  +N+         
Sbjct: 597  MRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADRFLRVRFTDEKYEGRINS--------- 647

Query: 472  IVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTS 531
                 T N+   +  VF RV+  ++ G  +  R + FLAF +SQ R+  A+FF+     +
Sbjct: 648  -----TYNNCMDE--VFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPNLT 700

Query: 532  VLDIKKWMGRFTDKNIA-KCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGI 590
              +I+ WMG F+D  IA K AAR+GQCFS+T A    P T    E+ +++RNGY+FSDG+
Sbjct: 701  AANIRAWMGHFSDIKIAAKHAARLGQCFSTTRAVTGCPVTVR--EIDEVERNGYIFSDGV 758

Query: 591  GKITPDLAMEVAQKLKLDV--NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKF 648
            G+I+  LA  +  + KL      PP  +Q R  GCKG++   P +     + +R+S  KF
Sbjct: 759  GRISKFLAQMIMTEFKLQTPSEEPPSVFQFRLGGCKGILTVSP-EAQRREVHIRKSQYKF 817

Query: 649  QSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAF 708
             + H  LEI  W++F    LNRQ+I +LS L V D +F      ML  L Q +     A 
Sbjct: 818  AAIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVSDNIFIEKLRLMLEDLEQAMTSETKAM 877

Query: 709  EVLTAACAEQGNTA--AIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRW 766
             +L         T   A M+  GF    +P ++ +L   RA Q+  L+EKA++F+  G  
Sbjct: 878  SMLQKRVDPNQMTLLLAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGAC 937

Query: 767  LMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET----------KKLQVIKGFVV 816
            L GCLDE   L+G   + +   P +   + +      E           KK +VI+G  +
Sbjct: 938  LFGCLDETATLKG---YYEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCI 994

Query: 817  IAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE 876
            +A+NP LHPGDIR++ AV+ P LHHL D +VFPQ GDR   +  SG DLDGD Y V WD+
Sbjct: 995  LARNPSLHPGDIRVVRAVNVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQ 1054

Query: 877  NLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADH 934
            +L+P S K W   PM+Y A+ A++LTR V   DI  FF  +M N+ L  I +AH+  AD+
Sbjct: 1055 DLVPLS-KDWFREPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADY 1113

Query: 935  SEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKE---AYQSYKSNK 991
             E G  DE CI LA+L + AVD+ K+G    M   L P+ +P FM K+       Y+S K
Sbjct: 1114 LEDGVNDERCIQLAQLHSAAVDYNKSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYQSKK 1173

Query: 992  ILGRLYRQSKDAYDEDISVSSEVDINP-VDIHYDTDL---EVPESVDFIADAWNQKCSYD 1047
            ILG++Y            +   V+  P ++  +D  +   ++  S + +  A   K  YD
Sbjct: 1174 ILGQIY-----------DIVERVEFRPKLEAPFDERILNCDISVSEEMVLAAKKLKGLYD 1222

Query: 1048 GQLNGLLEQYKVNREEELVTGHIWS---MPKYNSRKQGELKERLKHSYSALRKEFRQVF- 1103
              +  ++ Q+++  E E     +WS   +   N  K  +  E L    SALR+ F  +  
Sbjct: 1223 ADMRRIMAQHEIKTEFE-----VWSTFVLGHANMSKDYKFHEELGQISSALRERFLSMCQ 1277

Query: 1104 -EKMDSDCELL-----------SEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSA 1151
             E    D + L           ++D   AL +  +S  + +      +KK       D  
Sbjct: 1278 DEAGGRDFQHLAPLAVAMYRVTAQDVAEALGKEDSSKGHDIG---NAIKKEYKHLRND-- 1332

Query: 1152 RSVVLLSFAWIANDYLARIKIR 1173
              + L+SF W+    L +I  R
Sbjct: 1333 -QIPLISFPWVLQPVLGKIANR 1353


>gi|302505092|ref|XP_003014767.1| hypothetical protein ARB_07328 [Arthroderma benhamiae CBS 112371]
 gi|291178073|gb|EFE33864.1| hypothetical protein ARB_07328 [Arthroderma benhamiae CBS 112371]
          Length = 1296

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 272/802 (33%), Positives = 405/802 (50%), Gaps = 86/802 (10%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQ-TMNANVLSYFIAP 471
            +R   +TP+  Y   P V+ SNRV+R Y + ADRFLRV F DE  +  +N+         
Sbjct: 306  MRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADRFLRVRFTDEKYEGRINS--------- 356

Query: 472  IVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTS 531
                 T N+   +  VF RV+  ++ G  +  R + FLAF +SQ R+  A+FF+     +
Sbjct: 357  -----TYNNCMDE--VFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPNLT 409

Query: 532  VLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGI 590
              +I+ WMG F+D K +AK AAR+GQCFS+T A    P T    E+ +++RNGY+FSDG+
Sbjct: 410  AANIRAWMGHFSDIKIVAKHAARLGQCFSTTRAVTGCPVTV--REIDEVERNGYIFSDGV 467

Query: 591  GKITPDLAMEVAQKLKLDV--NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKF 648
            G+I+  LA  +  + KL      PP  +Q R  GCKG++   P +     + +R+S  KF
Sbjct: 468  GRISKFLAQMIMTEFKLQTPSEEPPSVFQFRLGGCKGILTVSP-EAQRREVHIRKSQYKF 526

Query: 649  QSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAF 708
             + H  LEI  W++F    LNRQ+I +LS L V D +F      ML  L Q +     A 
Sbjct: 527  AAIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVSDNIFIEKLRLMLEDLEQAMTSETKAM 586

Query: 709  EVLTAACAEQGNTA--AIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRW 766
             +L         T   A M+  GF    +P ++ +L   RA Q+  L+EKA++F+  G  
Sbjct: 587  SMLQKRVDPNQMTLLLAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGAC 646

Query: 767  LMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET----------KKLQVIKGFVV 816
            L GCLDE   L+G   + +   P +   + +      E           KK +VI+G  +
Sbjct: 647  LFGCLDETATLKG---YYEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCI 703

Query: 817  IAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE 876
            +A+NP LHPGDIR++ AV+ P LHHL D +VFPQ GDR   +  SG DLDGD Y V WD+
Sbjct: 704  LARNPSLHPGDIRVVRAVNVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQ 763

Query: 877  NLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADH 934
            +L+ P  K W   PM+Y A+ A++LTR V   DI  FF  +M N+ L  I +AH+  AD+
Sbjct: 764  DLV-PLPKDWFREPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADY 822

Query: 935  SEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKE---AYQSYKSNK 991
             E G  DE CI LA+L + AVD+ K+G    M   L P+ +P FM K+       Y+S K
Sbjct: 823  LEDGVNDERCIQLAQLHSAAVDYNKSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYQSKK 882

Query: 992  ILGRLYRQSKDAYDEDISVSSEVDINP-VDIHYDTDL---EVPESVDFIADAWNQKCSYD 1047
            ILG++Y            +   V+  P ++  +D  +   ++  S + +  A   K  YD
Sbjct: 883  ILGQIY-----------DIVERVEFRPKLEAPFDERILNCDISVSEEMVLAAKKLKGLYD 931

Query: 1048 GQLNGLLEQYKVNREEELVTGHIWS---MPKYNSRKQGELKERLKHSYSALRKEFRQVF- 1103
              +  ++ Q+++  E E     +WS   +   N  K  +  E L    SALR+ F  +  
Sbjct: 932  ADMRRIMAQHEIKTEFE-----VWSTFVLGHANMSKDYKFHEELGQISSALRERFLSMCQ 986

Query: 1104 -EKMDSDCELL-----------SEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSA 1151
             E    D + L           ++D   AL +  +S  + +      +KK       D  
Sbjct: 987  DEAGGRDFQHLAPLAVAMYRVTAQDVAEALGKEDSSKGHDIG---NAIKKEYKHLRND-- 1041

Query: 1152 RSVVLLSFAWIANDYLARIKIR 1173
              + L+SF W+    L +I  R
Sbjct: 1042 -QIPLISFPWVLQPVLGKIANR 1062


>gi|327305981|ref|XP_003237682.1| RNA-directed RNA polymerase [Trichophyton rubrum CBS 118892]
 gi|326460680|gb|EGD86133.1| RNA-directed RNA polymerase [Trichophyton rubrum CBS 118892]
          Length = 1604

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 271/802 (33%), Positives = 406/802 (50%), Gaps = 86/802 (10%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQ-TMNANVLSYFIAP 471
            +R   +TP+  Y   P V+ SNRV+R Y + ADRFLRV F DE  +  +N+         
Sbjct: 615  MRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADRFLRVRFTDEKYEGRINS--------- 665

Query: 472  IVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTS 531
                 T N+   +  VF RV+  ++ G  +  R + FLAF +SQ R+  A+FF+     +
Sbjct: 666  -----TYNNCMDE--VFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPNLT 718

Query: 532  VLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGI 590
              +I+ WMG F+D K +AK AAR+GQCFS+T A    P T     + +++RNGY+FSDG+
Sbjct: 719  AANIRAWMGHFSDIKIVAKHAARLGQCFSTTRAVTGCPVTVR--TIDEVERNGYIFSDGV 776

Query: 591  GKITPDLAMEVAQKLKLDV--NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKF 648
            G+I+  LA  +  + KL      PP  +Q R  GCKG++   P +     + +R+S  KF
Sbjct: 777  GRISKFLAQMIMTEFKLQTPSEEPPSVFQFRLGGCKGILTVSP-EAQRREVHIRKSQYKF 835

Query: 649  QSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAF 708
             + H  LEI  W++F    LNRQ+I +LS L V DE+F      ML  + Q +     A 
Sbjct: 836  AAIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVSDEIFIQKLRLMLEDMEQAMTSETKAM 895

Query: 709  EVLTAACAEQGNT--AAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRW 766
             +L         T   A M+  GF    +P ++ +L   RA Q+  L+EKA++F+  G  
Sbjct: 896  SMLQKRVDPNQMTLLPAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGAC 955

Query: 767  LMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET----------KKLQVIKGFVV 816
            L GCLDE   L+G   + +   P +   + +      E           KK +VI+G  +
Sbjct: 956  LFGCLDETATLKG---YYEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCI 1012

Query: 817  IAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE 876
            +A+NP LHPGDIR++ AV+ P LHHL D +VFPQ GDR   +  SG DLDGD Y V WD+
Sbjct: 1013 LARNPSLHPGDIRVVRAVNVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQ 1072

Query: 877  NLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADH 934
            +L+ P  K W   PM+Y A+ A++L R V   DI  FF  +M N+ L  I +AH+  AD+
Sbjct: 1073 DLV-PLPKDWFREPMDYTASNAQSLNRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADY 1131

Query: 935  SEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKE---AYQSYKSNK 991
             E G  DE CI LA+L + AVD+ K+G    M   L P+ +P FM K+       Y+S K
Sbjct: 1132 LEDGVNDERCIQLAQLHSAAVDYNKSGIPANMTRDLVPRRWPHFMEKKYKPKEAQYQSKK 1191

Query: 992  ILGRLYRQSKDAYDEDISVSSEVDINP-VDIHYDTDL---EVPESVDFIADAWNQKCSYD 1047
            ILG++Y            +   V+  P ++  +D  +   ++  S D +  A   K  YD
Sbjct: 1192 ILGQIY-----------DIVERVEFRPKLEAPFDERILNCDISVSQDMVLAAKKLKALYD 1240

Query: 1048 GQLNGLLEQYKVNREEELVTGHIWS---MPKYNSRKQGELKERLKHSYSALRKEFRQVF- 1103
              +  ++ Q+++  E E     +WS   +   N  K  +  E L    SALR+ F  +  
Sbjct: 1241 ADMRRIMAQHEIKTEFE-----VWSTFVLGHANMSKDYKFHEELGQISSALRERFLSMCQ 1295

Query: 1104 -EKMDSDCELL-----------SEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSA 1151
             E    D + L           +++  +AL + ++S  + V      +KK       D  
Sbjct: 1296 DEAGGRDFQHLAPLAVAMYRVTAQEVADALGKEESSKGHDVG---NAIKKDYKHLRND-- 1350

Query: 1152 RSVVLLSFAWIANDYLARIKIR 1173
              + L+SF W+    L +I  R
Sbjct: 1351 -QIPLISFPWVLQPVLGKIANR 1371


>gi|154290540|ref|XP_001545863.1| hypothetical protein BC1G_15614 [Botryotinia fuckeliana B05.10]
          Length = 1173

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 292/893 (32%), Positives = 444/893 (49%), Gaps = 109/893 (12%)

Query: 327  GISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKR 386
             + FE+ + +   + + I+N++ + + F + L   S + + A  +++  Y    + + KR
Sbjct: 138  NLPFEVRYQLEVCISREIVNEYNIDEKFINSLAELSAQ-DPAKARNLLEYVAEHY-SSKR 195

Query: 387  LKLVQEWLLKDPELYKGPKQIDDIVEV----RRLVITPTKAYCLPPEVELSNRVLRKY-- 440
            L            L      + DI       R+  +TPT      P VE +NRVLR Y  
Sbjct: 196  LYDPSSIFTNSEAL--SFSALTDIPHYCAFSRKATVTPTSILFNSPTVETTNRVLRHYSK 253

Query: 441  KDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTR---VFKRVRSILSG 497
            ++   RFLRV F DE  +                   +NS + K R   +F RV  ++S 
Sbjct: 254  ENQEGRFLRVQFTDEKFEGR-----------------INSCADKIRNDAIFTRVFRVISN 296

Query: 498  GFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNI-AKCAARMGQ 556
            G  +  R + FLAF +SQ R+  A+FF      S  DI++WMG F+  N+ AK AAR+GQ
Sbjct: 297  GIRIGDRHYEFLAFGNSQFRENGAYFFCPSANLSCNDIRQWMGTFSHINVVAKYAARLGQ 356

Query: 557  CFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAY 616
            CFS+T A   +   ++  ++PDI+R  Y F+DG+GKI+P LA  +A +LKL V+  P A+
Sbjct: 357  CFSTTRAIKGLSAPDI-VKIPDIERGRYCFTDGVGKISPYLAQMIASELKLRVDLAPSAF 415

Query: 617  QIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLL 676
            Q R  GCKG++   P   D   + +R+S  KF + +  LEI   ++F    LNRQ IT+L
Sbjct: 416  QFRLGGCKGILVVSPDAKDN-EVHIRKSQQKFTAAYNGLEIIRCSQFSSATLNRQTITIL 474

Query: 677  STLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQT 734
            S L V DE+F  M    LS     + ++ +A  +L     +   T  I  M+  GF  + 
Sbjct: 475  SALGVKDEVFLKMLSRQLSDYQSAMSNNAIALGLLNRYIDDNHMTINIAGMILNGFMSEK 534

Query: 735  EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG--------GQCFIQV 786
            EP +  +L   RA  +  L+EKA+I V  G +++GC+DE   L G        G  + + 
Sbjct: 535  EPFVLSLLHLWRAWSIKLLKEKAKIIVENGAFVLGCVDETNTLRGYTKPTVAYGTTYKET 594

Query: 787  SEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCL 846
              P     F +   R   T +  VI+G  ++ +NP LHPGD+R+++AV+ P LHHL D +
Sbjct: 595  ELP---QIFIQVPDR-ENTTQYNVIEGICLVGRNPSLHPGDLRVVQAVNIPALHHLRDVV 650

Query: 847  VFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQR 906
            VFPQ G+R   +  SG DLDGD +FV WD++L  P++ +  PM Y A +   L RPV   
Sbjct: 651  VFPQSGERDVPSMCSGGDLDGDDFFVIWDKDL-QPTEWNCEPMSYAALDPVALKRPVVVT 709

Query: 907  DIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTM 966
            D+ +FF K+M N++L +I +AH+  AD+ + G  D  C+ LAEL + AVD+ KTG+  TM
Sbjct: 710  DLQKFFVKYMKNDSLPSIAHAHLAQADYQKQGIKDPKCLKLAELHSKAVDYVKTGQPATM 769

Query: 967  PAHLKPKLYPDFMGK---EAYQSYKSNKILGRLYR---------QSKDAYDEDISVSSEV 1014
              +L P  +P FM K    A + Y S KILG+LY          Q ++ +D+ I  + E+
Sbjct: 770  QKYLAPPKWPHFMEKIHQPASKQYHSQKILGQLYDKVESVDFVPQYEEPFDKRILRAYEL 829

Query: 1015 DINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMP 1074
            D        +  L+          A   K  YD  +  +L Q  +  E E+ +  I S P
Sbjct: 830  D--------NATLKA---------ARQTKTKYDTAMRRILAQQDIKTEFEVWSTFILSKP 872

Query: 1075 KYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTY 1134
            K  S  +  L+E +     AL+  FR V       C   +  +  ++     +A Y+VT 
Sbjct: 873  KVGSDYK--LQEDMAVITGALKDRFRSV-------CINTAGGKDFSILGPFVAAMYKVT- 922

Query: 1135 HPEWVKKSLD--LQEQDSARSV---------------VLLSFAWIANDYLARI 1170
                 K+ LD  L E  + R+V                L+SF W+    L RI
Sbjct: 923  -----KEELDIALAECRTMRTVNGIKVPKRRMRPESMPLISFPWLFEKELGRI 970


>gi|296804254|ref|XP_002842979.1| RNA-directed RNA polymerase Rdp1 [Arthroderma otae CBS 113480]
 gi|238845581|gb|EEQ35243.1| RNA-directed RNA polymerase Rdp1 [Arthroderma otae CBS 113480]
          Length = 1473

 Score =  404 bits (1039), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 291/976 (29%), Positives = 458/976 (46%), Gaps = 125/976 (12%)

Query: 195  FKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIR 254
            +++      ++ +K+ S+   ++ +  L   P  + +  D         +M   DD W R
Sbjct: 238  YRIRVPFAHLSHIKRTSDGEEISFIFSLDYPPSYYRKLQDPSTTFSDSDNMWRSDDTWYR 297

Query: 255  TTDFT-----------------PSGAIGRCNSYRISI------SSRHRGKLSKVITYLGE 291
             TD                   P   IGR  ++R++       ++++   LSK++     
Sbjct: 298  QTDIVHNPQDLVHSKTSLKKAHPIINIGRWTTFRLTFHLTDENNTQNLETLSKILRDFN- 356

Query: 292  RRVQVDSLSRPITIREEPDFEVPMSDPFFCIHYE-----------------------EGI 328
                       I I + PDFE+    P   I +                        + I
Sbjct: 357  -----------IEILDAPDFEITKQPPTADIAWRWIDPPTHASKWTSPLEDLADNEYKHI 405

Query: 329  SFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLK 388
            S+ + + +   +  G+++++ ++  F + L+    +     L+H+   K    D  K   
Sbjct: 406  SYTVRYQLEVCISHGLLSEYTITKEFAERLQSLGEDDARDLLEHVSREKAVYHDPMK--- 462

Query: 389  LVQEWLLKDPELYKG---PKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLAD 445
                  + D E + G    K   +   +R   +TP+  Y   P V+ SNRVLR Y + AD
Sbjct: 463  ------IFDIEFFSGVTGRKIPKNCCYMRSATVTPSTIYFHTPTVDTSNRVLRYYIEHAD 516

Query: 446  RFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRK 505
            RFLRV F DE  +                 I  +  +    +F RV+  ++ G  +  R 
Sbjct: 517  RFLRVRFADEKYEGR---------------INSSYNNCMDELFTRVKRTMTNGITVGDRH 561

Query: 506  FSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYAT 564
            + FLAF +SQ R+  A+FF+     +  +I+ WMG F+D K +AK AAR+GQCFS+T A 
Sbjct: 562  YEFLAFGNSQFREHGAYFFASLPTLTAANIRAWMGHFSDIKIVAKHAARLGQCFSATKAV 621

Query: 565  VEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV--NPPPCAYQIRYAG 622
               P   +  E+ +I+RNGY+FSDG+G+I+  LA  +  +L +    + PP  +Q R  G
Sbjct: 622  TGCP--VIVQEIDEIERNGYIFSDGVGRISNFLAQMIRTELNIQTPSDEPPSVFQFRLGG 679

Query: 623  CKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVP 682
            CKG++   P +     + +R+S  KF + H  LE+   ++F    LNRQ+I +LS L V 
Sbjct: 680  CKGILTVSP-EAQHREVHIRKSQYKFAAVHNGLEVIRHSKFAGAHLNRQLIMVLSALGVT 738

Query: 683  DEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNT--AAIMLSAGFNPQTEPHLRG 740
            DE+F      +L  +   + +   A  +L         T   A M++ GF    EP ++ 
Sbjct: 739  DEIFLKKLHLVLEDMQDAMTNESKAITLLQKRVDPNQMTFLLAHMVNDGFQASCEPFVKS 798

Query: 741  MLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG--------GQCFIQVSEPFLG 792
            +L   RA  +  L+EKA+I +  G  L+GC+DE   L+G            I+     L 
Sbjct: 799  LLELWRAWDIKYLKEKAKIHIEKGACLLGCIDETATLKGYYEKERPASDATIEERLDNLP 858

Query: 793  NCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKG 852
              F +      ETK  ++I+G  ++A+NP LHPGDIR++ AV+ P LHHL D +VFPQ G
Sbjct: 859  EIFVQVFDTEEETK-YKIIEGPCILARNPSLHPGDIRVVRAVNVPALHHLKDVIVFPQTG 917

Query: 853  DRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIE 910
            DR  ++  SG DLDGD Y V WD +LI P  K W   PM+Y A+ A++LTR V   DI  
Sbjct: 918  DRDVSSTCSGGDLDGDDYIVIWDPDLI-PLPKDWFCEPMDYTASNAQSLTRDVTVNDITS 976

Query: 911  FFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHL 970
            FF  +M N++L  I ++H+  AD+ E G  DE C+ LA+L + AVD+ KTG    M   L
Sbjct: 977  FFVTYMKNDHLPQIAHSHLAFADYVEDGVNDERCMQLAQLHSAAVDYNKTGIPANMSRDL 1036

Query: 971  KPKLYPDFMGKE---AYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP-VDIHYDTD 1026
             P+ +P FM K        Y S KILG++Y            +   V+  P ++  +D  
Sbjct: 1037 IPRKWPHFMEKNHKPKEAQYYSRKILGQIY-----------DIVERVEFRPKLEAPFDKR 1085

Query: 1027 L---EVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGE 1083
            +    +P S D I  A   K  YD  +  ++ Q++V  E E+ +   +++   N  K   
Sbjct: 1086 ILNSHIPVSDDLIQIAKKMKVLYDADMRRIMAQHEVKTEFEVWS--TFALGHANMTKDYR 1143

Query: 1084 LKERLKHSYSALRKEF 1099
              E L    S LR  F
Sbjct: 1144 FHEELGQISSGLRNRF 1159


>gi|358384867|gb|EHK22464.1| hypothetical protein TRIVIDRAFT_28428 [Trichoderma virens Gv29-8]
          Length = 1158

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 298/908 (32%), Positives = 450/908 (49%), Gaps = 130/908 (14%)

Query: 314  PMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHI 373
            P   PF  +H + G+ +++   V     + ++N+H +S  F   L         AAL  +
Sbjct: 244  PSKFPF--VHLDFGVRYQLEVCVG----RRVLNEHTISLEFLQKL---------AALDPL 288

Query: 374  YSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQI----------------DDIVEVRRLV 417
                    DA +RL    E+LL + E+   P+++                   V  R+  
Sbjct: 289  --------DAKRRL----EFLLDNGEVMYNPQELFTWSAAASYVPNTRIPHYCVLARKAA 336

Query: 418  ITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDIT 477
            ITPT      P VE SNRVLR +  + DRFLRV F++E        + S  IA   R+  
Sbjct: 337  ITPTSILLSSPIVETSNRVLRYFNHIQDRFLRVQFVEE--------MESGRIAMTSRN-- 386

Query: 478  LNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKK 537
                  K  V+K++   L  G  +  R++ FLAF SSQLR C A+FF      S  DI++
Sbjct: 387  ------KEDVWKKILRTLYEGIQIGDRRYEFLAFGSSQLRQCGAYFFCPTDHISCDDIRR 440

Query: 538  WMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPD 596
            WMG     + +AK AAR+GQCFS+T     +P  +V   +PDI+RNGY F+DG+G I+  
Sbjct: 441  WMGEVGHIRIVAKHAARLGQCFSTTREMRGLPVPDVR-RIPDIERNGYCFTDGVGMISEF 499

Query: 597  LAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLE 656
            +A  + +++ LDV   P A+Q R  GCKGV+  WP    G  + +RES  KF++    LE
Sbjct: 500  MARMIIEEMTLDVYTEPTAFQFRMGGCKGVLVVWPQAKKG-EVYIRESQEKFKADVKGLE 558

Query: 657  ICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACA 716
            I    ++    LNRQ IT+L  L V    F ++ +  +S   + + +++VA  +LT    
Sbjct: 559  IIKCAKYSSATLNRQTITILECLGVSTPAFLAILEKQISLYEEAMKNNNVAVNILTKCVD 618

Query: 717  EQGNTA--AIMLSAGFNPQT--EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLD 772
            E  +T   A +L +GF   T  EP +  +L   R+  L  LR+KARI +    +++GC+D
Sbjct: 619  ENQSTLILAELLQSGFKTDTVQEPFVTNLLALWRSWSLKLLRDKARIPIEKSAFVLGCVD 678

Query: 773  ELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV------IKGFVVIAKNPCLHPG 826
            E G+L G       +E  +    +K    F +    +V      I+G  ++ +NP LHPG
Sbjct: 679  ETGILRGHS---NATEGTVDKDINKLPQIFLQVSDSKVYDQANAIEGVCIVGRNPSLHPG 735

Query: 827  DIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW 886
            DIR++EAVD PELHHL D +VFP  GDRP  N  SG DLDGD +F+ W+  LI P++ + 
Sbjct: 736  DIRVVEAVDIPELHHLKDVVVFPSTGDRPVPNMLSGGDLDGDDFFIIWEPTLI-PTEWNH 794

Query: 887  PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCIL 946
            P M Y++    TL R V+  D+ +FF ++M N+ L  I  AH+  AD    G   + C+ 
Sbjct: 795  PAMNYSSPSPATLDRDVNANDLRDFFVRYMQNDVLPLIATAHLGLADSD--GPKSDICLR 852

Query: 947  LAELAATAVDFPKTGKIVTM-PAHLKPKLYPDFMGKEAYQSYKSNKILGRLY----RQS- 1000
            LAEL + AVD+PKTG+     P    PK +P FM K+    YKS K LG +Y    +QS 
Sbjct: 853  LAELHSQAVDYPKTGEPAEWNPGLHNPKEWPHFMDKKV--CYKSKKALGAIYNRVIKQSI 910

Query: 1001 ------KDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLL 1054
                  ++A+D+ I    ++D                    + DA   K  YD  +  +L
Sbjct: 911  QFRPDWENAFDQRILKRFQLD-----------------NAMLKDARIIKSQYDIAVRRIL 953

Query: 1055 EQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLS 1114
             Q+K+  E EL T   W+M K +     + +E L   + A+++ FR+        C   +
Sbjct: 954  LQHKLETEFELYTS--WAMSKPSVGSDYKRQEELGKEFDAVKQRFREA-------CFEAA 1004

Query: 1115 EDEKNALFERKASAWYQVT----------YH--PEWVKKSLDLQEQDSARSVVLLSFAWI 1162
                 A  ++  +A Y+VT          +H  P      +  + +  A+S+ L+SF WI
Sbjct: 1005 GGYDEAKIDKFVAAMYKVTEEEIKIALFEHHRGPTNEAGVIVPERKLEAKSMPLISFPWI 1064

Query: 1163 ANDYLARI 1170
                + RI
Sbjct: 1065 FPWVMIRI 1072


>gi|322705481|gb|EFY97066.1| suppressor of ascus dominance [Metarhizium anisopliae ARSEF 23]
          Length = 1315

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 309/988 (31%), Positives = 465/988 (47%), Gaps = 122/988 (12%)

Query: 250  DPWIRTTDFTPSGA------------------IGRCNSYRISISSRHRGKLSKVITYLGE 291
            D W R TD +P                     IGR  ++R+S     + + S    +L  
Sbjct: 260  DTWQRATDISPVSNDAHPISIHNEAQFDDYIDIGRWTTFRLSFDP-EKAENSASYLHLQA 318

Query: 292  RRVQVDSLSRPITIRE------------EPDFEVPMSDPFFCIHYEEGIS--FEIMFLVN 337
                ++ L RP  + +            E    V  S P   +   + I   FE+ + + 
Sbjct: 319  AFYDLNVLVRPGCVFDTKTDAPSLWDYIEHPLAVTASQPSALLSMPQKIHLPFEVRYQLE 378

Query: 338  AVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKD 397
              + +G++N++ +   F   L           L+++      +FD  K   +      +D
Sbjct: 379  VCISRGVLNEYAIGIDFLQELNNLQTMDATHRLEYLVDQNEILFDPMKLFSM------ED 432

Query: 398  PELYKGPKQIDDIVE-VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEG 456
               +    +I      VR+  IT T      P VE SNRV+RKY  L DRFLRV F++E 
Sbjct: 433  ATAFVPAARIPHYCTYVRKASITATTIRFNSPTVETSNRVVRKYSHLQDRFLRVQFVEE- 491

Query: 457  LQTMNANVLSYFIAPIVRDITLNSFSQKT-RVFKRVRSILSGGFYLCGRKFSFLAFSSSQ 515
                         + +VR   L     K  +++KRV   LS G  +  R++ FLAF SSQ
Sbjct: 492  -------------SELVR---LGKTKYKNDKIWKRVERALSQGIRIGDRQYEFLAFGSSQ 535

Query: 516  LRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSST--YATVEVPPTEV 572
            LR  SA+FF   G  S  DI+ WMG+F   K +AK AAR+GQCFS+T     + VP  + 
Sbjct: 536  LRQSSAYFFCPTGHLSCEDIRAWMGQFDHIKCVAKYAARIGQCFSTTRDIKGIWVPDIKY 595

Query: 573  DPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPA 632
               + DI+RN   F+DG+G I+  L+  + +++ LD+   P A+Q R  GCKGV+A WP 
Sbjct: 596  ---IDDIQRNDQCFTDGVGLISKFLSQLIMEEMTLDIFDKPTAFQFRMGGCKGVLAVWP- 651

Query: 633  KGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDS 692
            +  G+ + +R S  KF+S    LEI          LNRQ IT+L +L VP +MF ++   
Sbjct: 652  QAQGMEVHIRNSQEKFKSDFQGLEIVRCAARSTATLNRQTITILESLGVPKKMFMALLKE 711

Query: 693  MLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQT--EPHLRGMLTCIRAA 748
             +S       D+  A ++LT    E  ++  +  +L AGF      EP          + 
Sbjct: 712  QISWYENAAKDTSEAIKLLTKFVDENQSSLVLAELLKAGFMTDNVREPFTLNTFNLWLSW 771

Query: 749  QLWGLREKARIFVPAGRWLMGCLDELGVLEGGQ-----CFIQVSEPFLGNCFSKHGSRFA 803
                LREK RI VP   +++GC+DE G L G       C  Q++E  L   F +      
Sbjct: 772  SFRLLREKTRIHVPKSAFVLGCVDESGSLRGHSIETEGCSDQLNENKLPQIFLQLTDPSH 831

Query: 804  ETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGS 863
            E K   +I+G  ++ +NP LHPGDIR+++AV++P+L HL D +VFP KGDRP     SG 
Sbjct: 832  EGKT-NIIQGKCIVGRNPSLHPGDIRVVQAVNNPKLRHLKDVIVFPSKGDRPVPAMLSGG 890

Query: 864  DLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENL 921
            DLDGD +F+ WD+ LIP   K W   PM+Y A   + L R V   D+ EFF  +M N+NL
Sbjct: 891  DLDGDDFFIIWDDRLIP---KEWNHKPMDYQAPNPRQLDRDVTVDDLREFFVNYMKNDNL 947

Query: 922  GTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGK 981
            G I  AH+  AD   +G   + C+ LAEL + AVD+ KTG+       ++P+ +P FM K
Sbjct: 948  GLIAVAHLAFADM--HGPKSQICLRLAELHSQAVDYAKTGEPAEFGHKMQPERWPHFMEK 1005

Query: 982  EAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDF----IA 1037
            ++  +Y+SNK LG L+         D          P +  +  D  + E  +F    + 
Sbjct: 1006 KS--TYRSNKALGALF---------DEVAKHTFQFRP-EWEHPFDKRILERYEFDMSTLT 1053

Query: 1038 DAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRK 1097
             A   K  YD  +  L+ QY V  E EL TG  W M   +     + +E L   +  +++
Sbjct: 1054 TAREIKAQYDSAIRRLMVQYHVETEYELYTG--WVMSNTSISSNYKRQEDLGLEFDVVKQ 1111

Query: 1098 EFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLD---------LQEQ 1148
             FR+        C  ++   +    ++  +A Y+VT   E V K+ +           E 
Sbjct: 1112 RFRE-------QCCNVAGGSEAPQLDKFVAAMYKVT--EEQVNKARNGGDDEPVGHQAET 1162

Query: 1149 DSAR----SVVLLSFAWIANDYLARIKI 1172
            DS      +V  +SF WI +  + R+ +
Sbjct: 1163 DSGEEPRPNVPFISFPWIFHWVMIRLAM 1190


>gi|345566166|gb|EGX49112.1| hypothetical protein AOL_s00079g66 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1475

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 342/1169 (29%), Positives = 526/1169 (44%), Gaps = 153/1169 (13%)

Query: 96   AGRTELFL-NGRALKVSLGPENPFR-------LNQRGRTSTPFKLPDVCVEIGTLVSRDE 147
             GR+E+ +  G    V L  E+P         +N+  R    F+LP   ++ G ++    
Sbjct: 246  TGRSEITIKGGEPHLVRLHLEHPRDTLTIESPVNRALRFPESFELPVQRLDFGFMIQETT 305

Query: 148  FFVAWRGPASGTDFLVDPFDGTCKFCFTR---DIAFALKSSTEHAVIKCEFKVEFLVREI 204
                +   AS       P D   +   +R   DI F L+        K + K    +  +
Sbjct: 306  MMSMYAVEASERGVWRKPLDILFQVDLSRKQLDIRFGLRFDASGGGKKRQPKYRMRIPFV 365

Query: 205  NLVKQY------SEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDF 258
             L   Y            +IL+ L   P VW +  D  +          + + W R TD 
Sbjct: 366  ALQSLYEATPDNQNGGSRSILIPLQYPPHVWRQLFDFSLSHKTDNPHWSEWNTWFRQTDI 425

Query: 259  T-----------------PSGAIGRCNSYRISIS--SRHRGKLSKVITYLGERRVQVDSL 299
                              P+  IGR  +YR++    S      + +I  L +  + +  +
Sbjct: 426  VENSEEFRMEPLAIRKKKPTIDIGRWTTYRLTFGQGSSLADDFNHMIRALKDFNIPMKHM 485

Query: 300  S-------RPITIREEPDFEVPMSDPFFCIHYEE-----GISFEIMFLVNAVMHKGIINQ 347
            S       + + + +  D   P+S+  +  H  +      +++ + + + A + +G +++
Sbjct: 486  SDFKLSEDKNLPVWDVIDRPTPLSEGSYLGHMLDDYNWASLTYPLRYQLEACISQGCVSE 545

Query: 348  HQLSDSFFD-LLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQ 406
            + +S  F D L+  + RE N+A    I      V D+ KR     E L   PE     + 
Sbjct: 546  YNVSKEFIDELIAIEEREPNLAV--RILET---VVDSGKRYYDPMEILDIKPERRSTAQI 600

Query: 407  IDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLS 466
                VE R+  ITPT  Y   P VE S RV+R + +  DRFLRV F DE L         
Sbjct: 601  PKYCVETRKATITPTMIYYANPVVETSYRVIRHFFNHKDRFLRVQFTDEKLHG------- 653

Query: 467  YFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE 526
                     I+         +F RV   L+ G  +  R F FLAF +SQLR   A+FF++
Sbjct: 654  --------KISATELDTSHELFTRVSKALNNGIKIGDRHFQFLAFGNSQLRQHGAYFFAD 705

Query: 527  DGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYV 585
                +  DI+KWMG+F   K +AK +AR GQCFS+T A       ++   +PD++RNG+ 
Sbjct: 706  GPDLTCDDIRKWMGKFEKIKVVAKFSARYGQCFSTTRAMNGFKVKDI--TIPDVERNGFC 763

Query: 586  FSDGIGKITPDLAMEVAQKLKLDVNPP-PCAYQIRYAGCKGVVACWP-----AKGD-GIR 638
            F+DG G I+   A  +A + ++    P PCA+Q R  GCKGV+   P       G+ G +
Sbjct: 764  FTDGCGTISSSAAQLIAAEYRIPRESPLPCAFQFRLGGCKGVLVVDPNIKKVETGEAGFQ 823

Query: 639  MSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN 698
            + +R S  KF + H +LEI  ++ F    LNRQ+I +LS L + D +F     S L  LN
Sbjct: 824  VCIRPSQRKFDADHNSLEIIRYSDFSVATLNRQLIQVLSDLGLEDTVFLDKLHSQLRDLN 883

Query: 699  QMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREK 756
              + D + A ++L       G T  I  +LS GF    EP ++ +L   RA  +  L+EK
Sbjct: 884  LAMEDKEAARKILMKNVDANGGTIQIAGLLSDGFMTSQEPFVQCLLHLWRAWSIKMLKEK 943

Query: 757  ARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSR-------------FA 803
            ARI +  G +L+G +DE G+L+G   F +  E    +  +    R             + 
Sbjct: 944  ARITIENGCFLLGVVDETGILKGH--FDKEHEELKKSRANGEALRCDLLPEIFVQIPDYE 1001

Query: 804  ETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGS 863
                 ++I+G  ++A+NP LHPGD+R++ AVD P+L HL + +VFPQ GD+P  N  SG 
Sbjct: 1002 NKGHYKIIQGPCLLARNPSLHPGDLRVVNAVDCPDLRHLRNVVVFPQTGDKPIANMCSGG 1061

Query: 864  DLDGDLYFVTWDENLIPPSKKSWPPMEYN---AAEAKTLTRPVDQRDIIEFFAKHMVNEN 920
            DLDGD Y V WD   IPP K +  PM+Y      EAK+    V   DI +FF ++M N+ 
Sbjct: 1062 DLDGDDYIVIWDGTFIPP-KVNESPMDYTPPKPVEAKSGN--VTLEDIRKFFVRYMKNDT 1118

Query: 921  LGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMG 980
            LGTI NAH+  AD    G   + C+ LA L + AVDFPKTG    M   L+ + +P F  
Sbjct: 1119 LGTIANAHLATADRLPAGVFSQECVELAGLHSLAVDFPKTGVDAKMRKELRIRDWPHFFE 1178

Query: 981  KE---AYQSYKSNKILGRLYRQ-----------SKDAYDEDISVSSEVDINPVDIHYDTD 1026
            K      + Y S++ILG+LY             +KD   +   +++  DIN   ++   D
Sbjct: 1179 KHIGTKKRFYVSSEILGQLYDAVEKVAFRPEECAKDLKFDGRILTAFNDINEKHLNMARD 1238

Query: 1027 LEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQG---E 1083
            L               K  YD  +  L+ Q  +  E E     IWS    +    G   +
Sbjct: 1239 L---------------KAKYDAAIRRLMAQNDIKTEFE-----IWSTFALSHALIGSDYK 1278

Query: 1084 LKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSL 1143
              E +K     L   F Q         E+ +EDE      R  +A YQ+T + E+ +   
Sbjct: 1279 FHEDMKEMRDGLMDRFDQEIR-----VEIRTEDEYT--LGRFVAAIYQIT-NEEYTRAV- 1329

Query: 1144 DLQEQDSARSVVLLSFAWIANDYLARIKI 1172
                 ++   + L+SF W+ ++ L +I +
Sbjct: 1330 -----ENGEPMPLISFPWVHDELLGKIAM 1353


>gi|303313157|ref|XP_003066590.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
            delta SOWgp]
 gi|240106252|gb|EER24445.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
            delta SOWgp]
          Length = 1445

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 273/810 (33%), Positives = 403/810 (49%), Gaps = 88/810 (10%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLL----RGQSREV--NVAALKHIYSYKWPVF 381
            + F + + +   +  G +N++ +   F   L      ++RE+  +VA+ KH+Y     +F
Sbjct: 413  LPFTVRYQLEVCLSHGFLNEYTIGKEFVTALVALGETKARELLEHVASEKHVYYDPKKIF 472

Query: 382  DACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYK 441
            D            +K     + PK       +R   +TP+  Y   P V+++NRV+R Y 
Sbjct: 473  DIL---------FVKPATSRRIPKYC---CYMRTARVTPSTVYFGTPSVDITNRVIRHYI 520

Query: 442  DLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYL 501
            + ADRFLRV F DE  +                 I  +  +    VF RV+  +  G  L
Sbjct: 521  EYADRFLRVRFTDEKFEGR---------------IQPSHNNTMDEVFTRVKRTMMNGITL 565

Query: 502  CGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSS 560
              R + FLAF +SQ R+  A+FF+     +  +I+ WMG F+D K IA+ AAR+GQCFS+
Sbjct: 566  GDRHYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFST 625

Query: 561  TYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQ--KLKLDVNPPPCAYQI 618
            T A    P  ++  E+ DI+RNGY FSDG+G+I+  LA  V    K+K     PP  +Q 
Sbjct: 626  TRAVTGCP-VQIR-EIEDIQRNGYTFSDGVGRISRFLAQMVMTEFKIKTPCGEPPSVFQF 683

Query: 619  RYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLST 678
            R  GCKG++   P +    ++ +R+S  KF + H  LE+   + F    LNRQ+I +LS+
Sbjct: 684  RLGGCKGILTVSP-EAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIVVLSS 742

Query: 679  LNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEP 736
            L VPDE+F      ML  L   +     A  +L         T  +  M+  GF    EP
Sbjct: 743  LEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLYKYIDPNQMTLVLAEMIQDGFQSSKEP 802

Query: 737  HLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFS 796
             +  +L   RA Q+  L+EKA+I +  G  L GCLDE G L+G   F   + P     + 
Sbjct: 803  FVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKG---FFHDNIPSKDASYE 859

Query: 797  K----------HGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCL 846
            +            SR     K ++I+G  +IA+NP LHPGDIR+++AV+ P LHHL D +
Sbjct: 860  ERLACLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPALHHLRDVI 919

Query: 847  VFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYN-AAEAKTLTRPV 903
            VFPQ GDR   +  SG DLDGD Y V WD++L+P   K W   PM Y  + +A  L+R V
Sbjct: 920  VFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLP---KDWFKQPMNYAPSVKALRLSRDV 976

Query: 904  DQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKI 963
               DI  FF  +M N+ L  I ++H+  AD+ E G  D  CI LAEL + AVD+ KTG  
Sbjct: 977  TVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELHSAAVDYNKTGIP 1036

Query: 964  VTMPAHLKPKLYPDFMGKEAY---QSYKSNKILGRL--------YRQSKDAYDEDISVSS 1012
              M   L P+ +P FM K+       Y S KILG+L        YR   +A  +D  ++S
Sbjct: 1037 AKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLYDIVERVNYRPKLEAPFDDRILNS 1096

Query: 1013 EVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWS 1072
             +++N                D +A A   K  YD  +  ++ Q+++  E E+ +  + S
Sbjct: 1097 GIEVND---------------DLLAVAAELKVLYDADMCRIMAQHEIKTEFEVWSTFVLS 1141

Query: 1073 MPKYNSRKQGELKERLKHSYSALRKEFRQV 1102
                N  K  +  E +     ALR+ FR +
Sbjct: 1142 --HSNMSKDYKFHEEIGQISCALRERFRNL 1169


>gi|402075074|gb|EJT70545.1| RNA-dependent RNA polymerase 1 [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1551

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 270/794 (34%), Positives = 405/794 (51%), Gaps = 76/794 (9%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            +R+ ++TP+  Y   P VE +NRVLR Y D  DRF+R+ F DE L     N         
Sbjct: 428  MRKAIVTPSTVYLNSPTVETTNRVLRHYYDFRDRFMRIQFTDE-LHRGRINA-------- 478

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
             +D  +N       ++ RV  +L  G ++  R + FLAF +SQ+R+ SA+FF+  G  + 
Sbjct: 479  TQDQRVND-----ELYTRVYRVLRNGIFIGDRHYQFLAFGNSQMRESSAYFFAAVGDVTC 533

Query: 533  LDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIG 591
              I+ WMG F   +N+ K AAR+GQCFS+T   ++    +    +PDI+ NGY FSDG+G
Sbjct: 534  DSIRAWMGDFRHIRNVGKYAARLGQCFSTT-RNIDSTSVQWIKSIPDIEENGYCFSDGVG 592

Query: 592  KITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSH 651
            KI+   +  ++Q+L L  N  P A+Q R  G KG++  WP    G+ + +R S  KFQ+ 
Sbjct: 593  KISQFWSTRISQRLSL--NTYPSAFQFRMGGRKGILTVWP-DVKGMDIHVRPSQEKFQTE 649

Query: 652  HTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL 711
            H+ LE+   +++    LNRQ I +LS L + D +F  M    L+  ++ + D   A  +L
Sbjct: 650  HSRLEVIRCSQYAVATLNRQTIPILSALGIEDHVFEDMLADQLASYDKAMEDPVAAMSLL 709

Query: 712  TAACAEQGNTAAI--MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMG 769
                 E   T A+  ++ AG     EP +  ML   R   +  L+EKARI V  G +++G
Sbjct: 710  NLYVDENQMTKALSQLIMAGLMKSQEPFVWTMLRLWRTWSIKSLKEKARIVVEKGAFVLG 769

Query: 770  CLDELGVLEGGQCFIQV---SEPFLGNCFSKHGSRFAETKK-----LQVIKGFVVIAKNP 821
            C+DE G L G    ++      P L +  S+    F +         +V+ G  V+ +NP
Sbjct: 770  CVDETGKLRGHYARVKTHPDQRPRLNH--SELPQIFLQVPDGPNGLYKVVTGTCVVGRNP 827

Query: 822  CLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI-P 880
             LHPGD+RI+EAVD PEL HL D +VFP+ GDR   +  SG DLDGD YF+ WDE L+ P
Sbjct: 828  SLHPGDLRIVEAVDVPELRHLRDVVVFPKSGDRDIPSMCSGGDLDGDDYFIIWDERLVPP 887

Query: 881  PSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGAL 940
            P ++S+PPM Y A ++    R V   D+  FF  HM N +L TI +AH+ HAD    G  
Sbjct: 888  PEERSYPPMNYEAEKSLDPDRDVTADDLRRFFVLHMKNHSLPTIAHAHLAHADC--LGVK 945

Query: 941  DENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQS 1000
             E CI LA L + AVD+PKTG    +   L PK YP FM K   ++Y S +ILG+LY + 
Sbjct: 946  SEVCIELARLHSQAVDYPKTGIPAVVRRGLIPKQYPHFMEKSTRRTYHSGRILGKLYDKV 1005

Query: 1001 KDAYDEDISVSSEVDINPV-DIHYDTDLEVPESVD--FIADAWNQKCSYDGQLNGLLEQY 1057
              A             +P  ++ +D+ +     +D   +  A   K  YD  +  ++ Q 
Sbjct: 1006 HQAT-----------FDPAYEMVFDSRILNKYKLDAATLRKARQMKTKYDQAMRRIMGQG 1054

Query: 1058 KVNREEELVTGHIWSMPKY-NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSED 1116
             +  E E+ +  + S P+  N+ K    +E +    + L+  FR   + +++  EL   D
Sbjct: 1055 DIGTEFEVFSSFVLSRPRVGNAYKH---QENVGRESATLKSLFRT--KCIEAAAELAEGD 1109

Query: 1117 EKNALFERK----------------ASAWYQVTYHPEWVKKSLDLQEQDSAR----SVVL 1156
            +       K                  A Y+VT   E V+ +L   +   AR    S+ L
Sbjct: 1110 DAKGGGGVKIPPSLLRHNLDVMGPFVVAMYRVT--DEEVRIALHECKSRGARPNPKSMPL 1167

Query: 1157 LSFAWIANDYLARI 1170
            ++F WI +  L  I
Sbjct: 1168 ITFPWIFDTVLTEI 1181


>gi|320036523|gb|EFW18462.1| RNA-directed RNA polymerase Rdp1 [Coccidioides posadasii str.
            Silveira]
          Length = 1444

 Score =  401 bits (1031), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 274/811 (33%), Positives = 404/811 (49%), Gaps = 90/811 (11%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLL----RGQSREV--NVAALKHIYSYKWPVF 381
            + F + + +   +  G +N++ +   F   L      ++RE+  +VA+ KH+Y     +F
Sbjct: 412  LPFSVRYQLEVCLSHGFLNEYTIGKEFVTALVALGETKARELLEHVASEKHVYYDPKKIF 471

Query: 382  DACKRLKLVQEWLLKDPELYKG-PKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKY 440
            D           L   P + +  PK       +R   +TP+  Y   P V+++NRV+R Y
Sbjct: 472  DI----------LFVKPAMSRRIPKYC---CYMRTARVTPSTVYFGTPSVDITNRVIRHY 518

Query: 441  KDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFY 500
             + ADRFLRV F DE  +                 I  +  +    VF RV+  +  G  
Sbjct: 519  IEYADRFLRVRFTDEKFEGR---------------IQPSHNNTMDEVFTRVKRTMMNGIT 563

Query: 501  LCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFS 559
            L  R + FLAF +SQ R+  A+FF+     +  +I+ WMG F+D K IA+ AAR+GQCFS
Sbjct: 564  LGDRHYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFS 623

Query: 560  STYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQ--KLKLDVNPPPCAYQ 617
            +T A    P  ++  E+ DI+RNGY FSDG+G+I+  LA  V    K+K     PP  +Q
Sbjct: 624  TTRAVTGCP-VQIR-EIEDIQRNGYTFSDGVGRISRFLAQMVMTEFKIKTPCGEPPSVFQ 681

Query: 618  IRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLS 677
             R  GCKG++   P +    ++ +R+S  KF + H  LE+   + F    LNRQ+I +LS
Sbjct: 682  FRLGGCKGILTVSP-EAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIVVLS 740

Query: 678  TLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTE 735
            +L VPDE+F      ML  L   +     A  +L         T  +  M+  GF    E
Sbjct: 741  SLEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEMIQDGFQSSKE 800

Query: 736  PHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCF 795
            P +  +L   RA Q+  L+EKA+I +  G  L GCLDE G L+G   F   + P     +
Sbjct: 801  PFVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKG---FFHDNIPSKDASY 857

Query: 796  SK----------HGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDC 845
             +            SR     K ++I+G  +IA+NP LHPGDIR+++AV+ P LHHL D 
Sbjct: 858  EERLACLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPALHHLRDV 917

Query: 846  LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYN-AAEAKTLTRP 902
            +VFPQ GDR   +  SG DLDGD Y V WD++L+P   K W   PM Y  + +A  L+R 
Sbjct: 918  IVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLP---KDWFKQPMNYAPSVKALRLSRD 974

Query: 903  VDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGK 962
            V   DI  FF  +M N+ L  I ++H+  AD+ E G  D  CI LAEL + AVD+ KTG 
Sbjct: 975  VTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELHSAAVDYNKTGI 1034

Query: 963  IVTMPAHLKPKLYPDFMGKEAY---QSYKSNKILGRL--------YRQSKDAYDEDISVS 1011
               M   L P+ +P FM K+       Y S KILG+L        YR   +A  +D  ++
Sbjct: 1035 PAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLYDIVERVNYRPKLEAPFDDRILN 1094

Query: 1012 SEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIW 1071
            S +++N                D +A A   K  YD  +  ++ Q+++  E E+ +  + 
Sbjct: 1095 SGIEVND---------------DLLAVAAELKVLYDADMCRIMAQHEIKTEFEVWSTFVL 1139

Query: 1072 SMPKYNSRKQGELKERLKHSYSALRKEFRQV 1102
            S    N  K  +  E +     ALR+ FR +
Sbjct: 1140 S--HSNMSKDYKFHEEIGQISCALRERFRNL 1168


>gi|392864142|gb|EAS35051.2| RNA-directed RNA polymerase [Coccidioides immitis RS]
          Length = 1403

 Score =  401 bits (1030), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 275/816 (33%), Positives = 403/816 (49%), Gaps = 100/816 (12%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLL----RGQSREV--NVAALKHIYSYKWPVF 381
            + F + + +   +  G++N++ +   F   L      ++RE+  +VA+ KH+Y     +F
Sbjct: 371  LPFSVRYQLEVCLSHGLLNEYTIGKEFVAALVALGETKARELLEHVASEKHVYYDPKKIF 430

Query: 382  DACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYK 441
            D            +K     + PK       +R   +TP+  Y   P V+++NRV+R Y 
Sbjct: 431  DIL---------FVKPATSRRIPKYC---CYMRTARVTPSTVYFGTPSVDITNRVIRHYI 478

Query: 442  DLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYL 501
            + ADRFLRV F DE  +                 I  +  +    VF RV+  +  G  L
Sbjct: 479  EYADRFLRVRFTDEKFEGR---------------IQPSHNNTMDEVFTRVKRTMMNGITL 523

Query: 502  CGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSS 560
              R + FLAF +SQ R+  A+FF+     +  +I+ WMG F+D K IA+ AAR+GQCFS+
Sbjct: 524  GDRHYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFST 583

Query: 561  TYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQ--KLKLDVNPPPCAYQI 618
            T A     P ++  E+ DI+RNGY FSDG+G+I+  LA  V    K+K     PP  +Q 
Sbjct: 584  TRAVTGC-PVQIR-EIEDIQRNGYTFSDGVGRISRFLAQMVMTEFKIKTPCGEPPSVFQF 641

Query: 619  RYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLST 678
            R  GCKG++   P +    ++ +R+S  KF + H  LE+   + F    LNRQ+I +LS+
Sbjct: 642  RLGGCKGILTVSP-EAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIVVLSS 700

Query: 679  LNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEP 736
            L VPDE+F      ML  L   +     A  +L         T  +  M+  GF    EP
Sbjct: 701  LEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEMIQDGFQSSKEP 760

Query: 737  HLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFS 796
             +  +L   RA Q+  L+EKA+I +  G  L GCLDE G L+G          F  N  S
Sbjct: 761  FVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGL---------FHDNIPS 811

Query: 797  KHG----------------SRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH 840
            K                  SR     K ++I+G  +IA+NP LHPGDIR+++AV+ P LH
Sbjct: 812  KDASYEERLACLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPALH 871

Query: 841  HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYN-AAEAK 897
            HL D +VFPQ GDR   +  SG DLDGD Y V WD++L+P   K W   PM Y  + +A 
Sbjct: 872  HLRDVIVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLP---KDWFKQPMNYAPSVKAL 928

Query: 898  TLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDF 957
             L+R V   DI  FF  +M N+ L  I ++H+  AD+ E G  D  CI LAEL + AVD+
Sbjct: 929  RLSRDVTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELHSAAVDY 988

Query: 958  PKTGKIVTMPAHLKPKLYPDFMGKEAY---QSYKSNKILGRL--------YRQSKDAYDE 1006
             KTG    M   L P+ +P FM K+       Y S KILG+L        YR   +A  +
Sbjct: 989  NKTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLYDIVERVNYRPKLEAPFD 1048

Query: 1007 DISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELV 1066
            D  ++S +++N                D +A A   K  YD  +  ++ Q+++  E E+ 
Sbjct: 1049 DRILNSGIEVND---------------DLLAVAAELKVLYDADMCRIMAQHEIKTEFEVW 1093

Query: 1067 TGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQV 1102
            +  + S    N  K  +  E +     ALR+ FR +
Sbjct: 1094 STFVLS--HSNMSKDYKFHEEIGQISCALRERFRNL 1127


>gi|146323311|ref|XP_754927.2| RNA-directed RNA polymerase (Sad-1) [Aspergillus fumigatus Af293]
 gi|129558353|gb|EAL92889.2| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus fumigatus
            Af293]
          Length = 1423

 Score =  401 bits (1030), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 269/771 (34%), Positives = 402/771 (52%), Gaps = 102/771 (13%)

Query: 387  LKLVQEWLLKDPELYKGPKQIDDI---------------VEVRRLVITPTKAYCLPPEVE 431
            +KL++   +K+ E+Y  P +I D+                 +R   ITPT  Y   P V+
Sbjct: 449  VKLLEHVAIKE-EVYHDPMKIFDLKFAKGSTRAKIPSYCCYMRSARITPTTIYYNTPSVD 507

Query: 432  LSNRVLRKYKDLADRFLRVTFMDEGL-QTMNANVLSYFIAPIVRDITLNSFSQKTRVFKR 490
            +SNRV+R Y + ADRFLRV F DE L   +N+ +          D T++       VF R
Sbjct: 508  ISNRVIRYYIEYADRFLRVRFTDEKLLGRINSTI----------DNTMD------EVFTR 551

Query: 491  VRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAK 549
            ++  L+ G  +  R++ FLAF +SQ R+  A+FF+     +  +I+ WMG F D +N+AK
Sbjct: 552  IKRALANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPSLTAANIRAWMGTFNDIRNVAK 611

Query: 550  CAARMGQCFSSTYATVEVPPTEVDPEL-PDIKRNGYVFSDGIGKITPDLAMEVAQKLKLD 608
             AAR+GQCFS+T A    P   V   L  D+ RNGY FSDG+G+I+  LA   A +LK+ 
Sbjct: 612  HAARLGQCFSTTRAIAGCP---VQIRLIDDVVRNGYTFSDGVGRISKFLAQMAASELKIR 668

Query: 609  V--NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPG 666
                 PP A+Q R  GCKG++   P +     + +R+S  KF S H  LEI  W+++   
Sbjct: 669  TPSGDPPSAFQFRLGGCKGMLTVSP-EAQRQEVHIRKSQYKFASVHNGLEIIRWSQYSMA 727

Query: 667  FLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI-- 724
             LNRQ+I +LS+L + D +F     +ML  LN+ +     A   L         T  +  
Sbjct: 728  TLNRQLIIVLSSLGIQDSVFHDKLRAMLQSLNESMESDSQALCWLKKYVDPNQMTLVVSQ 787

Query: 725  MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG----- 779
            M+  GF    EP +  ++   +A  L  L+EKA+I +  G  L+GC+DE G+L G     
Sbjct: 788  MVLDGFRSSREPFVTSIMRLWKAWHLKYLKEKAKIVIEKGANLLGCMDETGILRGYSEWI 847

Query: 780  --------------GQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHP 825
                           + F+Q+  P  G C              +VI+G  ++A+NP LHP
Sbjct: 848  PAKGASDEEKLAALPEIFVQIHHPDTGKC--------------EVIEGVCILARNPSLHP 893

Query: 826  GDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS 885
            GDIR++ AV+ P+L HL D +VFPQ GDR   +  SG DLDGD Y V WD++L+P   + 
Sbjct: 894  GDIRVVRAVNVPQLSHLKDVVVFPQTGDRDIPSTCSGGDLDGDDYLVIWDQDLVP---ED 950

Query: 886  W--PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDEN 943
            W   PM+Y + +A+ L + V    I  FF  +M N+ L  I +AH+  AD  E G  +E 
Sbjct: 951  WFRKPMKYTSDKAQDLDQDVTVNHITSFFVLYMKNDFLPRIAHAHLAWADRLEDGVNEEK 1010

Query: 944  CILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQS---YKSNKILGRLYRQS 1000
            CI LA+L + AVD+ KTGK   M   L+PK++P FM K+       YKSNKILG+LY   
Sbjct: 1011 CIRLAQLHSDAVDYNKTGKPANMARSLQPKVWPHFMEKKHKPKEMIYKSNKILGQLY--- 1067

Query: 1001 KDAYDEDISVSSEVDINP-VDIHYDTDL---EVPESVDFIADAWNQKCSYDGQLNGLLEQ 1056
             DA +        +D  P +++ +D  +    +  S D +  A + K  YD  ++ ++ Q
Sbjct: 1068 -DAVE-------RIDFVPSLEMPFDERILTCSLGVSDDLVQFARDLKADYDAAMHRIMAQ 1119

Query: 1057 YKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFR-QVFEKM 1106
            +++  E E+ +  + S    N  K  +  E L    S+LR  +R + +EK+
Sbjct: 1120 HEITTEFEVWSTFVLS--HSNMSKDYKFHEELGLISSSLRDMYRKKCYEKV 1168


>gi|159127939|gb|EDP53054.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus fumigatus
            A1163]
          Length = 1423

 Score =  401 bits (1030), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 269/771 (34%), Positives = 402/771 (52%), Gaps = 102/771 (13%)

Query: 387  LKLVQEWLLKDPELYKGPKQIDDI---------------VEVRRLVITPTKAYCLPPEVE 431
            +KL++   +K+ E+Y  P +I D+                 +R   ITPT  Y   P V+
Sbjct: 449  VKLLEHVAIKE-EVYHDPMKIFDLKFAKGSTRAKIPSYCCYMRSARITPTTIYYNTPSVD 507

Query: 432  LSNRVLRKYKDLADRFLRVTFMDEGL-QTMNANVLSYFIAPIVRDITLNSFSQKTRVFKR 490
            +SNRV+R Y + ADRFLRV F DE L   +N+ +          D T++       VF R
Sbjct: 508  ISNRVIRYYIEYADRFLRVRFTDEKLLGRINSTI----------DNTMD------EVFTR 551

Query: 491  VRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAK 549
            ++  L+ G  +  R++ FLAF +SQ R+  A+FF+     +  +I+ WMG F D +N+AK
Sbjct: 552  IKRALANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPSLTAANIRAWMGTFNDIRNVAK 611

Query: 550  CAARMGQCFSSTYATVEVPPTEVDPEL-PDIKRNGYVFSDGIGKITPDLAMEVAQKLKLD 608
             AAR+GQCFS+T A    P   V   L  D+ RNGY FSDG+G+I+  LA   A +LK+ 
Sbjct: 612  HAARLGQCFSTTRAIAGCP---VQIRLIDDVVRNGYTFSDGVGRISKFLAQMAASELKIR 668

Query: 609  V--NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPG 666
                 PP A+Q R  GCKG++   P +     + +R+S  KF S H  LEI  W+++   
Sbjct: 669  TPSGDPPSAFQFRLGGCKGMLTVSP-EAQRQEVHIRKSQYKFASVHNGLEIIRWSQYSMA 727

Query: 667  FLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI-- 724
             LNRQ+I +LS+L + D +F     +ML  LN+ +     A   L         T  +  
Sbjct: 728  TLNRQLIIVLSSLGIQDSVFHDKLRAMLQSLNESMESDSQALCWLKKYVDPNQMTLVVSQ 787

Query: 725  MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG----- 779
            M+  GF    EP +  ++   +A  L  L+EKA+I +  G  L+GC+DE G+L G     
Sbjct: 788  MVLDGFRSSREPFVTSIMRLWKAWHLKYLKEKAKIVIEKGANLLGCMDETGILRGYSEWI 847

Query: 780  --------------GQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHP 825
                           + F+Q+  P  G C              +VI+G  ++A+NP LHP
Sbjct: 848  PAKGASDEEKLAALPEIFVQIHHPDTGKC--------------EVIEGVCILARNPSLHP 893

Query: 826  GDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS 885
            GDIR++ AV+ P+L HL D +VFPQ GDR   +  SG DLDGD Y V WD++L+P   + 
Sbjct: 894  GDIRVVRAVNVPQLSHLKDVVVFPQTGDRDIPSTCSGGDLDGDDYLVIWDQDLVP---ED 950

Query: 886  W--PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDEN 943
            W   PM+Y + +A+ L + V    I  FF  +M N+ L  I +AH+  AD  E G  +E 
Sbjct: 951  WFRKPMKYTSDKAQDLDQDVTVNHITSFFVLYMKNDFLPRIAHAHLAWADRLEDGVNEEK 1010

Query: 944  CILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQS---YKSNKILGRLYRQS 1000
            CI LA+L + AVD+ KTGK   M   L+PK++P FM K+       YKSNKILG+LY   
Sbjct: 1011 CIRLAQLHSDAVDYNKTGKPANMARSLQPKVWPHFMEKKHKPKEMIYKSNKILGQLY--- 1067

Query: 1001 KDAYDEDISVSSEVDINP-VDIHYDTDL---EVPESVDFIADAWNQKCSYDGQLNGLLEQ 1056
             DA +        +D  P +++ +D  +    +  S D +  A + K  YD  ++ ++ Q
Sbjct: 1068 -DAVE-------RIDFVPSLEMPFDERILTCSLGVSDDLVQFARDLKADYDAAMHRIMAQ 1119

Query: 1057 YKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFR-QVFEKM 1106
            +++  E E+ +  + S    N  K  +  E L    S+LR  +R + +EK+
Sbjct: 1120 HEITTEFEVWSTFVLS--HSNMSKDYKFHEELGLISSSLRDMYRKKCYEKV 1168


>gi|340521639|gb|EGR51873.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1161

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 301/908 (33%), Positives = 443/908 (48%), Gaps = 130/908 (14%)

Query: 314  PMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHI 373
            P   PF  +H E G+ +++   V+    + ++N+H +S    + L+G      +AAL  +
Sbjct: 252  PSKFPF--VHLEFGVRYQLEVCVS----RRLLNEHTVS---LEFLQG------LAALDPL 296

Query: 374  YSYKWPVFDACKRLKLV--QEWLLKDPE---------LYKGPKQIDD-IVEVRRLVITPT 421
                    DA +RL+ +  Q  ++ DP+          Y    +I    V  R+  +TPT
Sbjct: 297  --------DAKRRLEFLADQGDVMYDPKDLLNWAAASTYMPNTRIPHYCVLARKAAVTPT 348

Query: 422  KAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDE---GLQTMNANVLSYFIAPIVRDITL 478
                  P VE SNRVLR +  + DRFLRV F++E   G   M                  
Sbjct: 349  TILLSTPVVETSNRVLRYFNHIQDRFLRVQFVEETEFGRMAM------------------ 390

Query: 479  NSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKW 538
             S   K  V+K++   L  G  +  R + FLAF SSQLR C A+FF      S  DI++W
Sbjct: 391  -SCRNKEDVWKKILRTLYQGIQIGDRHYQFLAFGSSQLRQCGAYFFCPTDHISCDDIRRW 449

Query: 539  MGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDL 597
            MG     + +AK AAR+GQCFS+T     +P  +V   +PD++RNGY F+DG+G I+  +
Sbjct: 450  MGEVGHIRIVAKYAARLGQCFSTTREMRGLPIPDVR-SIPDVERNGYCFTDGVGIISDFM 508

Query: 598  AMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEI 657
            A  + ++L LDV   P A+Q R  GCKGV+  WP    G  + +R+S  KF++    LEI
Sbjct: 509  AQMIMEELTLDVYAEPSAFQFRMGGCKGVLVVWPQATKG-EVCIRQSQEKFKAEVKNLEI 567

Query: 658  CSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAE 717
                ++    LNRQ IT+L  L V  + F  + +  +    + +  +DVA E+LT    E
Sbjct: 568  IKCAKYSSATLNRQTITILECLGVTKKAFLDILEEQIRLYEEAMGKNDVAIEMLTNCVDE 627

Query: 718  QGNTA--AIMLSAGFNPQ--TEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDE 773
              +T   A +L AGF      EP +  +L+  R+  L  L+EKARI V    +++GC+DE
Sbjct: 628  NQSTLILAELLQAGFKTDKVQEPFVANLLSLWRSWSLKLLKEKARIPVDKSAFVLGCVDE 687

Query: 774  LGVLEGG----------------QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVI 817
               L G                 Q F+QVS+  + N             K  V+KG  V+
Sbjct: 688  TSTLRGHFIATEGSSDKDISKLPQIFLQVSDSKIYN-------------KTHVVKGLCVV 734

Query: 818  AKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEN 877
             +NP LHPGDIR++EAVD P LHHL D +VFP  GDRP  N  SG DLDGD +FV W+  
Sbjct: 735  GRNPSLHPGDIRVVEAVDIPGLHHLKDVVVFPSTGDRPVPNMLSGGDLDGDDFFVIWEPT 794

Query: 878  LIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHS 935
            L+P   + W  P M Y +   +TL R V+  D+ +FF K+M N+ L  I  AH+  AD  
Sbjct: 795  LLP---EIWNHPAMNYTSPSPETLDREVNVDDLRDFFVKYMKNDVLPLIATAHLALAD-- 849

Query: 936  EYGALDENCILLAELAATAVDFPKTGKIVTMPAHL-KPKLYPDFMGKEAYQSYKSNKILG 994
              G L + C+ LA+L + AVD+PKTG+     A +  P+ +P FM K+   SY S K LG
Sbjct: 850  RLGPLSKICLHLADLHSQAVDYPKTGQPAEWNAAMHNPQQWPHFMEKK--NSYISPKALG 907

Query: 995  RLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLL 1054
             +Y + K       S+  + D          D   P++   + DA   K  YDG +  +L
Sbjct: 908  DIYNRVKQQ-----SIQFQPDWETAFDRRILDRFEPDNAT-LRDARRIKSQYDGAVRRIL 961

Query: 1055 EQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLS 1114
              + +  E EL T   W+M K     + + +E L   + A+++ FR         C   +
Sbjct: 962  VHHNLETEFELYTS--WAMSKPPLGSEYKRQEDLGKEFDAVKQRFRDA-------CIEAA 1012

Query: 1115 EDEKNALFERKASAWYQVT----------YH--PEWVKKSLDLQEQDSARSVVLLSFAWI 1162
                 A  +R  +A Y++T          +H  P      +    +  ARS+ L+SF WI
Sbjct: 1013 GGHDEAKIDRFVAAMYKITEQEVKIALFEHHRGPTNEAGVMKPARELQARSMPLISFPWI 1072

Query: 1163 ANDYLARI 1170
                + RI
Sbjct: 1073 FPWVMIRI 1080


>gi|119192036|ref|XP_001246624.1| hypothetical protein CIMG_00395 [Coccidioides immitis RS]
          Length = 1492

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 275/816 (33%), Positives = 403/816 (49%), Gaps = 100/816 (12%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLL----RGQSREV--NVAALKHIYSYKWPVF 381
            + F + + +   +  G++N++ +   F   L      ++RE+  +VA+ KH+Y     +F
Sbjct: 460  LPFSVRYQLEVCLSHGLLNEYTIGKEFVAALVALGETKARELLEHVASEKHVYYDPKKIF 519

Query: 382  DACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYK 441
            D            +K     + PK       +R   +TP+  Y   P V+++NRV+R Y 
Sbjct: 520  DIL---------FVKPATSRRIPKYC---CYMRTARVTPSTVYFGTPSVDITNRVIRHYI 567

Query: 442  DLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYL 501
            + ADRFLRV F DE  +                 I  +  +    VF RV+  +  G  L
Sbjct: 568  EYADRFLRVRFTDEKFEGR---------------IQPSHNNTMDEVFTRVKRTMMNGITL 612

Query: 502  CGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSS 560
              R + FLAF +SQ R+  A+FF+     +  +I+ WMG F+D K IA+ AAR+GQCFS+
Sbjct: 613  GDRHYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFST 672

Query: 561  TYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQ--KLKLDVNPPPCAYQI 618
            T A     P ++  E+ DI+RNGY FSDG+G+I+  LA  V    K+K     PP  +Q 
Sbjct: 673  TRAVTGC-PVQIR-EIEDIQRNGYTFSDGVGRISRFLAQMVMTEFKIKTPCGEPPSVFQF 730

Query: 619  RYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLST 678
            R  GCKG++   P +    ++ +R+S  KF + H  LE+   + F    LNRQ+I +LS+
Sbjct: 731  RLGGCKGILTVSP-EAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIVVLSS 789

Query: 679  LNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEP 736
            L VPDE+F      ML  L   +     A  +L         T  +  M+  GF    EP
Sbjct: 790  LEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEMIQDGFQSSKEP 849

Query: 737  HLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFS 796
             +  +L   RA Q+  L+EKA+I +  G  L GCLDE G L+G          F  N  S
Sbjct: 850  FVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKG---------LFHDNIPS 900

Query: 797  KHG----------------SRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH 840
            K                  SR     K ++I+G  +IA+NP LHPGDIR+++AV+ P LH
Sbjct: 901  KDASYEERLACLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPALH 960

Query: 841  HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYN-AAEAK 897
            HL D +VFPQ GDR   +  SG DLDGD Y V WD++L+P   K W   PM Y  + +A 
Sbjct: 961  HLRDVIVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLP---KDWFKQPMNYAPSVKAL 1017

Query: 898  TLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDF 957
             L+R V   DI  FF  +M N+ L  I ++H+  AD+ E G  D  CI LAEL + AVD+
Sbjct: 1018 RLSRDVTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELHSAAVDY 1077

Query: 958  PKTGKIVTMPAHLKPKLYPDFMGKEAY---QSYKSNKILGRL--------YRQSKDAYDE 1006
             KTG    M   L P+ +P FM K+       Y S KILG+L        YR   +A  +
Sbjct: 1078 NKTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLYDIVERVNYRPKLEAPFD 1137

Query: 1007 DISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELV 1066
            D  ++S +++N                D +A A   K  YD  +  ++ Q+++  E E+ 
Sbjct: 1138 DRILNSGIEVND---------------DLLAVAAELKVLYDADMCRIMAQHEIKTEFEVW 1182

Query: 1067 TGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQV 1102
            +  + S    N  K  +  E +     ALR+ FR +
Sbjct: 1183 STFVLS--HSNMSKDYKFHEEIGQISCALRERFRNL 1216


>gi|119493033|ref|XP_001263772.1| RNA-directed RNA polymerase (Sad-1), putative [Neosartorya fischeri
            NRRL 181]
 gi|119411932|gb|EAW21875.1| RNA-directed RNA polymerase (Sad-1), putative [Neosartorya fischeri
            NRRL 181]
          Length = 1599

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 280/832 (33%), Positives = 423/832 (50%), Gaps = 109/832 (13%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGL-QTMNANVLSYFIAP 471
            +R   ITPT  Y   P V++SNRV+R Y + ADRFLRV F DE L   +N+ V       
Sbjct: 665  MRSARITPTTIYYNTPSVDISNRVIRYYIEYADRFLRVRFTDEKLLGRINSTV------- 717

Query: 472  IVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTS 531
               D T++       VF R++  L+ G  +  R++ FLAF +SQ R+  A+FF+     +
Sbjct: 718  ---DNTMDE------VFTRIKRALANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPNLT 768

Query: 532  VLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPEL-PDIKRNGYVFSDG 589
              +I+ WMG F D +N+AK AAR+GQCFS+T A    P   V   L  D+ +NGY FSDG
Sbjct: 769  AANIRAWMGTFNDIRNVAKHAARLGQCFSTTRAIAGCP---VQIRLIDDVVQNGYTFSDG 825

Query: 590  IGKITPDLAMEVAQKLKLDV--NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNK 647
            +G+I+  LA   A +LK+    + PP A+Q R  GCKG++   P +     + +R+S  K
Sbjct: 826  VGRISKFLAQMAASELKIKTPSDDPPSAFQFRLGGCKGMLTVSP-EAQRQEVHIRKSQYK 884

Query: 648  FQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA 707
            F + H  LEI  W+++    LNRQ+I +LS+L + D +F     +ML  LN+ +     A
Sbjct: 885  FAAVHNGLEIIRWSQYSMATLNRQLIIVLSSLGIQDRVFHDKLRAMLQSLNEAMESDSQA 944

Query: 708  FEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGR 765
               L         T  +  M+  GF    EP +  ++   +A  L  L+EKA+I +  G 
Sbjct: 945  LCWLKKYVDPNQMTLVVSQMVLDGFRSSREPFVTSIMRLWKAWHLKYLKEKAKIVIEKGA 1004

Query: 766  WLMGCLDELGVLEG-------------------GQCFIQVSEPFLGNCFSKHGSRFAETK 806
             L+GC+DE G+L G                    + F+Q+  P  G C            
Sbjct: 1005 NLLGCMDETGILRGYSERVPAKGASDEEKLAALPEIFVQIHRPDTGKC------------ 1052

Query: 807  KLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLD 866
              +VI+G  ++A+NP LHPGDIR++ AV+ P+L HL D +VFPQ GDR   +  SG DLD
Sbjct: 1053 --EVIEGVCILARNPSLHPGDIRVVRAVNVPQLSHLKDVVVFPQTGDRDIPSMCSGGDLD 1110

Query: 867  GDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTI 924
            GD Y V WD++L+P   + W    M+Y + +A+ L + V    I  FF  +M N+ L  I
Sbjct: 1111 GDDYLVIWDQDLVP---EDWFRKAMKYTSDKAQDLDQDVTVNHITSFFVLYMKNDFLPRI 1167

Query: 925  CNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKE-- 982
             +AH+  AD  E G  +E CI LA+L + AVD+ KTGK   M   L+PK++P FM K+  
Sbjct: 1168 AHAHLAWADRLEDGVNEEKCIRLAQLHSDAVDYNKTGKPANMTRSLQPKVWPHFMEKKHK 1227

Query: 983  -AYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP-VDIHYDTDL---EVPESVDFIA 1037
               + YKSNKILG+LY    DA +        +D  P +++ +D  +    +  + D + 
Sbjct: 1228 PKERIYKSNKILGQLY----DAVE-------RIDFVPSLEMPFDERILTCSLGVNDDLVQ 1276

Query: 1038 DAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRK 1097
             A + K  YD  ++ ++ Q+++  E E+ +  + S    N  K  +  E L    S+LR 
Sbjct: 1277 FARDLKADYDAAMHRIMAQHEIKTEFEVWSTFVLS--HSNMSKDYKFHEELGLISSSLRD 1334

Query: 1098 EFR-QVFEKMDSDC-ELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVV 1155
             +R + +EK+     ELL+           A A Y+VT H E     +  + ++     +
Sbjct: 1335 MYRKKCYEKVGGRTFELLAP---------LAVAMYRVT-HEEMTSALVKYRAENPPDGKL 1384

Query: 1156 ------------LLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVAD 1195
                         +SF WI ++ L +I +   E    D +  V+ LA    D
Sbjct: 1385 FHKPTPRIDHLPFISFPWILHNILGKIALGHYEEPEPDPAPTVSALATASVD 1436


>gi|429860171|gb|ELA34917.1| suppressor of ascus dominance [Colletotrichum gloeosporioides Nara
            gc5]
          Length = 1353

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 282/883 (31%), Positives = 433/883 (49%), Gaps = 110/883 (12%)

Query: 327  GISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKR 386
             + F++ + +   + +GII ++ ++  F + L   +++     L++    +  V+D    
Sbjct: 441  ALDFQVHYQLEVCISRGIICEYAITREFLERLAAVNKDRAKWTLEYFADREKRVWDLND- 499

Query: 387  LKLVQEWLLKDPEL---YKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDL 443
                   + +D E    +  P        +R++V+TPT  Y   P VE SNRVLRK+ + 
Sbjct: 500  -------IFEDEEANLHFPNPLMPRYCTTIRKVVVTPTTVYYSSPGVESSNRVLRKFSEY 552

Query: 444  ADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCG 503
             DRFLRV F DE            +   I  D           +F RV   L+ G  +  
Sbjct: 553  QDRFLRVQFTDE-----------LYYGKIYSD-------SGEELFSRVYRTLAKGITIGS 594

Query: 504  RKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTY 562
            R + FLAF +SQ+R+C+ +FF      S   I+ WMG F   KN+AK AAR+GQCFS+T 
Sbjct: 595  RHYEFLAFGNSQIRECAVYFFCPTDHRSCDCIRDWMGDFGHIKNVAKYAARIGQCFSTTR 654

Query: 563  ATVEVPPTEVDPELP--DIKRNGYVFSDGIGKITPDLAMEVAQKLKLD--VNPPPCAYQI 618
               E+P T V   +P  D++RNG+ FSDG+GKI+  LA  V  ++  D      P A+Q 
Sbjct: 655  ---EIPGTTVANIVPIEDVERNGFCFSDGVGKISQLLAHIVVVEMSSDDACISVPSAFQF 711

Query: 619  RYAGCKGVVACWPAKGDGIR--MSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLL 676
            R  GCKG++A WP   D  R  + +R S  KF++    LEI  + +     LNRQ IT+L
Sbjct: 712  RMGGCKGMLAVWP---DAKRQEVHIRPSQEKFKATFNGLEIIKYAQHSIATLNRQTITVL 768

Query: 677  STLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGF-NPQ 733
            ++L V  E    + +  +    + + D   A  +L     E   +  I  ++  GF +P+
Sbjct: 769  TSLGVRAETILKLAERQIKNYQKAMNDRVAAASLLGQYIDENLTSLTIKDLVGWGFMDPE 828

Query: 734  T-EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG------------- 779
              EP +  +L   R   +  L+EKAR+ V    +L+GCLDE G L G             
Sbjct: 829  IQEPFVLTILDLWRIWSMKLLKEKARVIVEESAFLLGCLDETGSLRGYSTATEGKKTNNI 888

Query: 780  ---GQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDH 836
                Q F+QV  P             + + K   + G  ++ +NP LHPGD+R++EAVD 
Sbjct: 889  EDLPQVFLQVESP-------------SGSGKFTCVTGLCIVGRNPSLHPGDLRVVEAVDV 935

Query: 837  PELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAA 894
            P+LHHL + +VFP+ GDR   +  SG DLDGD +FV W+++LIP   K W  PPM Y   
Sbjct: 936  PQLHHLRNVVVFPRNGDRDVPSMMSGGDLDGDDFFVMWNQDLIP---KDWHQPPMNYTQP 992

Query: 895  EAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATA 954
                L R V  +D+  FF ++M N++L  I  AH+ HAD S  G  D+ C+ LA L + A
Sbjct: 993  TPAVLRRDVQVKDLRTFFVRYMQNDSLALIATAHLAHADKSLLGVKDQKCLQLAALHSKA 1052

Query: 955  VDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEV 1014
            VD+ KTG    +P  L PK  P F+G    Q+Y S+  LG+LY   +D           V
Sbjct: 1053 VDYVKTGDPAKLPPALNPKERPHFLGSRG-QTYHSSTALGKLYDMIQD-----------V 1100

Query: 1015 DINPV-DIHYDTDL--EVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIW 1071
              NP+ +  +D  +      + D ++ A   K  YD  +  L+ Q  ++ E E+ TG   
Sbjct: 1101 GFNPLYEKRFDNRVLNRFNLTEDLLSKARAVKVQYDMAMRRLMGQRDIDTEFEIWTGFAL 1160

Query: 1072 SMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKA---SA 1128
            S P+  S  + +  E +    S L+  FR++       C    E   + +F+      +A
Sbjct: 1161 SKPRVGSDYKQQ--EEIGRESSLLKHRFREI-------C--YQEAGGSRVFDNIGPFVAA 1209

Query: 1129 WYQVTYHPEWVKKSLDLQEQDSAR-SVVLLSFAWIANDYLARI 1170
             Y+VT        + + ++++  R S+ L+SF WI +  + RI
Sbjct: 1210 MYKVTQDEVNAALAGEYEDEEHKRQSMPLISFPWIFHWIMGRI 1252


>gi|116193483|ref|XP_001222554.1| hypothetical protein CHGG_06459 [Chaetomium globosum CBS 148.51]
 gi|88182372|gb|EAQ89840.1| hypothetical protein CHGG_06459 [Chaetomium globosum CBS 148.51]
          Length = 1572

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 278/892 (31%), Positives = 447/892 (50%), Gaps = 92/892 (10%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVA------ALKHIYSYKWPVF 381
            + +E+ + +   + +GI++++ +   F + L   S+  ++        L++      PV+
Sbjct: 403  LPYEVRYQLEVCISRGILSEYNIRRDFLEKLFEMSKPRDLKPNRARLVLEYAADEGKPVY 462

Query: 382  DACKRLKLVQEWLLKDP---ELYKGPKQIDDIVE-VRRLVITPTKAYCLPPEVELSNRVL 437
            +  +        L +D      Y     I D    VR++ +TPT+ +   P VE +NRV+
Sbjct: 463  NPME--------LFEDRGAMAYYPTTLHIPDYCALVRKVTVTPTRIFFSTPTVETTNRVV 514

Query: 438  RKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSG 497
            R+YKD+ D F+RV F DE L                  I  +   +   ++ RV  +++ 
Sbjct: 515  RRYKDVQDHFIRVQFTDELLDGR---------------IRASDVDRDDELYARVCRVMTQ 559

Query: 498  GFYLCGRKFSFLAFSSSQLRDCSAWFF--SEDGKTSVLDIKKWMGRFTD-KNIAKCAARM 554
            G  +    + FLAF +SQ+R+  A+FF   EDG T+   I++WMG F    ++AK AAR+
Sbjct: 560  GIRMGKWHWKFLAFGNSQIRENGAFFFCEPEDGTTTCHSIREWMGNFDHISSVAKLAARL 619

Query: 555  GQCFSSTYATVEVPPTEVDPELPDIKRN-GYVFSDGIGKITPDLAMEVAQKLKLDVNPPP 613
            GQCFS+T     +    +  ++PDI+ N G+ F+DG+GKI+  LA  V++  K+D  P  
Sbjct: 620  GQCFSTTRLLNCISAPRI-VKIPDIESNDGFCFTDGVGKISFPLASLVSEAWKIDTRP-- 676

Query: 614  CAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQII 673
             A+Q R  GCKGV+  WP    G  + +R S  KF + +  LEI   ++F    LNRQ I
Sbjct: 677  SAFQFRMGGCKGVLVTWP-DAKGTEVHVRPSQEKFSAEYNGLEIIRCSQFSCPTLNRQTI 735

Query: 674  TLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSA----G 729
             +LS L VPD++F  M    ++  +  + + D A E+L+      GN     ++     G
Sbjct: 736  LILSCLGVPDDVFIDMMAGQIASYDTAMTNQDRAIELLSKYV--DGNMTTTTIATMILNG 793

Query: 730  FNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQ---- 785
            F    EP +R +L   R+  + GL+EKAR+ V  G +L+GC+DE G L G     +    
Sbjct: 794  FMHTREPFVRTLLQLWRSWSIKGLKEKARLVVDQGAFLLGCVDETGTLRGHSRATEGRNG 853

Query: 786  VSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDC 845
            +++  L   F +   R  +    +V+ G  ++ +NP LHPGDIR++EAVD PEL HL D 
Sbjct: 854  ITQNDLPQIFLQVPDR-KDRGAYKVVTGICIVGRNPSLHPGDIRVVEAVDVPELRHLRDV 912

Query: 846  LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQ 905
            +VFP KGDR   +  SG DLDGD +FV WD  LIPP + S PPM Y A E    ++    
Sbjct: 913  VVFPLKGDRDVPSMCSGGDLDGDDFFVIWDPKLIPP-EWSHPPMNYTAPEPLNESQESIV 971

Query: 906  RDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT 965
              +  FF   M N+ L  I +AH+  AD+   GA    C+ LA L + AVD+ KTG    
Sbjct: 972  NSLAFFFVLFMKNDRLPLIAHAHLATADYEVTGAKHWKCLQLASLHSIAVDYVKTGIPAR 1031

Query: 966  MPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDT 1025
                L P+ YP FM K   +SY+S  +LG+LY    D  D+++  + +    P D     
Sbjct: 1032 WNKKLDPRKYPHFMEKAKAKSYRSTSVLGKLY----DMIDKEVFDNRDNYKLPFDDRILK 1087

Query: 1026 DLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELK 1085
              E+   +  + +A   K  YD  +  ++ Q ++  E E+    + S P+  +  +  ++
Sbjct: 1088 RFELGHPL--LKEARKIKTQYDISMRRIMGQLEIRTEFEIWAAFVMSKPRVGTDYK--VQ 1143

Query: 1086 ERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERK--ASAWYQVTYHPEWVKKSL 1143
            E++    + L+K+FR +       C  + E+     F R+   +A Y+VT    W +  +
Sbjct: 1144 EKVGRESAGLKKQFRDL-------CLKVVEEHG---FNRQEFVAAMYKVT----WEETRI 1189

Query: 1144 DLQE---------------QDSARSVVLLSFAWIANDYLARIKIRCREMANI 1180
             L E               + +ARS+ L+SF W+  D + +I +    + N+
Sbjct: 1190 ALHEARQPHVLPDGTVGLRRVTARSMPLISFPWLFPDDMGKIALGTERLPNL 1241


>gi|406868525|gb|EKD21562.1| RNA-dependent RNA polymerase 1 [Marssonina brunnea f. sp.
            'multigermtubi' MB_m1]
          Length = 1494

 Score =  398 bits (1023), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 327/1101 (29%), Positives = 514/1101 (46%), Gaps = 132/1101 (11%)

Query: 148  FFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFKVEFLVREINLV 207
            F V +  P  G    V  FD   K+ F   + F+  ++ +H V+    K   L+  +N  
Sbjct: 215  FTVQFPNPEGG----VGRFDRENKYMF--QVPFSQLTTIKHMVVNA--KAFALIISLNSP 266

Query: 208  KQYSEFSCVAILLQLASSPR-----VWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSG 262
             Q+              SP+      W+R  D   +V  P+ +  +    I      P  
Sbjct: 267  PQFFRKRVDEYAGHSDGSPQWNEMDTWFRQTD---VVYDPYRLQTEK---ITLHKDQPVI 320

Query: 263  AIGRCNSYRISISS--RHRGKLSKVITYLGERRVQVDSLSRPITI-REEPDFEVPMSDPF 319
             IGR  +Y     +          +   L +  +++ ++S    +   EPD   P+ DP 
Sbjct: 321  DIGRWTTYFFEFPNLDNSPATFDTIKQALQDYNIEITTISSLNKVPSREPDL-WPLIDPR 379

Query: 320  FCI-------HYEEG---ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAA 369
                      +  EG   + FE+ + +   + + I+N++ ++  F   L  +   V+ A 
Sbjct: 380  HSADASGDLQYLSEGAYVLPFEVRYQLEVCISREILNEYNVTRGFVKKL-SEIASVDAAK 438

Query: 370  LKHIYSYKWPVFDACKRLKLVQEWLLKDPEL--YKGPKQIDDIVEV-RRLVITPTKAYCL 426
             ++I  Y   V    KR+      + +D E   +    +I       R+  ITP+  Y  
Sbjct: 439  ARNILEY---VAGQEKRVYDPMT-IFEDQEALAFTAKTEIPHYCAYSRKATITPSTMYFS 494

Query: 427  PPEVELSNRVLRKY--KDLADRFLRVTFMDEGLQT-MNANVLSYFIAPIVRDITLNSFSQ 483
             P VE +NRVLR Y  ++   RFLRV F DE  +  +NA V +                +
Sbjct: 495  SPTVETTNRVLRHYARENRDGRFLRVQFTDELAEGRINACVDN---------------QK 539

Query: 484  KTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFT 543
               +F R+   L  G  +  R + FLAF +SQ R+  A+FF      S  DI+ WMG F+
Sbjct: 540  NDELFTRIYRTLFNGIQIGDRHYEFLAFGNSQFRENGAYFFCPTEHLSCDDIRGWMGHFS 599

Query: 544  D-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVA 602
            D K +AK AAR+GQCFS+T A   +   ++  ++ D++ NGY F+DG+GKI+P LA  ++
Sbjct: 600  DIKVVAKYAARLGQCFSTTRAINGLSKPDI-VKIADVENNGYTFTDGVGKISPFLAQMIS 658

Query: 603  QKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTR 662
             +L L  N  P A+Q R  GCKGV+  WP   +   + +R S  KF + +  LEI    R
Sbjct: 659  AELGLRTNTAPSAFQFRLGGCKGVLVVWPDAKEK-EVHIRMSQQKFTAVYNGLEIIRCAR 717

Query: 663  FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTA 722
            F    LNRQ IT+LS L VPDE+F  M    L+     + + D A  +L     +   T 
Sbjct: 718  FSCATLNRQTITILSALGVPDEVFLKMLSEQLANYQTAMDNDDAAVSLLLRYIDDNQMTI 777

Query: 723  --AIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
              A M+  GF  + +P +  +L   R+  +  L+EKA+I +  G +++GC+DE   L G 
Sbjct: 778  NIATMIRNGFMAEKDPFVLSLLHLWRSWSIKLLKEKAKIIIENGAFVLGCVDETFTLRGY 837

Query: 781  QCFI-----QVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVD 835
                     QV+E  L   F +   + ++  +  +I G  ++ +NP LHPGD+R+++AVD
Sbjct: 838  TISTAPHGEQVAEEELPQIFLQVPDK-SDPNRYNIITGICLVGRNPSLHPGDLRVVQAVD 896

Query: 836  HPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNA 893
             P LHHL D +VFP  GDR   +  SG DLDGD +FV WDE L P   + W   PM Y A
Sbjct: 897  VPALHHLRDVVVFPASGDRDVPSMCSGGDLDGDDFFVIWDEALRP---REWNCQPMNYIA 953

Query: 894  AEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAAT 953
             + K   +PV   D+++FF + M N++L  I +AH+  +D  +    D  CI LA L + 
Sbjct: 954  PKPKLHNQPVQIVDLMKFFVRFMKNDSLPAIAHAHLAQSDALQMSVKDPKCIELASLHSK 1013

Query: 954  AVDFPKTGKIVTMPAHLKPKLYPDFMGKE---AYQSYKSNKILGRLYRQSKDAYDEDISV 1010
            AVD+ KTG+   MP HL+P+ +P FM K+       Y SN+ILG+LY +      E +  
Sbjct: 1014 AVDYVKTGEAAQMPKHLRPRKWPHFMEKKHKPKTAQYHSNEILGQLYDKV-----ETVDF 1068

Query: 1011 SSEVDINPVDIH----YDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELV 1066
              + +  P D      Y  D  + ++V  I      K  YD  +  L+ Q ++  E E+ 
Sbjct: 1069 KPQYE-GPFDKRILKAYILDDAILKTVRQI------KSKYDTAMKRLMAQQEIKTEFEIW 1121

Query: 1067 TGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKA 1126
            +  + S P+  S  +  ++E +     AL+ +FR       ++C   +  ++ A+     
Sbjct: 1122 STFVLSRPRVGSDYK--VQEEIARLSDALKDQFR-------AECIGKAGSKEFAVLGPFV 1172

Query: 1127 SAWYQVTYHPEWVKKSLDL------------QEQDSAR-----SVVLLSFAWIANDYLAR 1169
            +A Y++T      K+ LD+              Q  AR      + L+SF W+    L R
Sbjct: 1173 AAMYKIT------KEELDIALAECRATKVVGDRQVPARRMEPKHMPLISFPWLFEKELGR 1226

Query: 1170 IKIRCREMANIDTSKPVNYLA 1190
            I         IDTS+ +  L 
Sbjct: 1227 I------ATGIDTSEELEDLG 1241


>gi|310791166|gb|EFQ26695.1| RNA dependent RNA polymerase [Glomerella graminicola M1.001]
          Length = 1269

 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 277/873 (31%), Positives = 426/873 (48%), Gaps = 96/873 (10%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            ++FE+ + +   + +G+++++ ++ +F D L    ++     L++       V+D  K  
Sbjct: 362  LNFEVYYQLEVCISRGVLSEYSITQAFIDELSRMDKDRAKWMLEYFADLAKRVWDPMK-- 419

Query: 388  KLVQEWLLKDPE---LYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLA 444
                  + +D +    +           +R++ +TP+  +   P VE SNRVLRKY    
Sbjct: 420  ------MFEDEDARFFFPNASMPYYCTTIRKITVTPSTMHFCSPNVESSNRVLRKYNSYQ 473

Query: 445  DRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGR 504
            DRFLRV F DE  +    N                  +  T +F R+  +L  G  +  R
Sbjct: 474  DRFLRVQFTDELYKGKVYN------------------NAGTEIFNRIYRVLKQGIKIGNR 515

Query: 505  KFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYA 563
             + FLAF +SQ+R+C+ +FF     T+  DI++WMG F+  +N+AK AAR+GQCFS+T  
Sbjct: 516  VYEFLAFGNSQIRECAVYFFCPTAYTTCDDIRQWMGEFSHIRNVAKYAARIGQCFSTTRE 575

Query: 564  TVEVP-PTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAG 622
               V  P  V  E  DI+R GY FSDG+GKI+  LA  V  ++  +    P A+Q R  G
Sbjct: 576  IRGVTVPRIVQAE--DIERGGYCFSDGVGKISKLLAEMVVNEMGQESVGIPSAFQFRMGG 633

Query: 623  CKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVP 682
            CKG++A WP    G+ + +R S  KF++    LEI  + ++    LNRQ IT+L+TL V 
Sbjct: 634  CKGMLAVWP-DAKGLEVHIRPSQEKFKAQFNGLEIIRFAQYSVATLNRQTITILATLGVE 692

Query: 683  DEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRG 740
             E    +    +    + + D   A  +L     E   +  I  ++  GF   TE     
Sbjct: 693  SEPILQLAKQQVQNYEKAMRDRVAAAGLLGRYVDENMTSLTIKDLVCWGFM-DTEVQEPF 751

Query: 741  MLTCIRAAQLWG---LREKARIFVPAGRWLMGCLDELGVLEGG----------------Q 781
            +LT +   ++W    L+EKAR+ V    +L+GCLDE G L G                 Q
Sbjct: 752  VLTILNLWRIWSVKLLKEKARVIVEQSAFLLGCLDETGTLRGHSKATEGRETRNIEDIPQ 811

Query: 782  CFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHH 841
             F+Q+  P  G              K   + G  ++ +NP LHPGDIR++EAVD P L H
Sbjct: 812  IFLQIPNPDDG--------------KFYCVTGVCIVGRNPSLHPGDIRVVEAVDVPALRH 857

Query: 842  LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR 901
            L + +VFP  GDR   +  SG DLDGD +FV W+  LIPP     PPM+Y A++A  L R
Sbjct: 858  LKNVVVFPSIGDRDVPSMLSGGDLDGDDFFVIWNPALIPPQWHQ-PPMDYVASKAPVLKR 916

Query: 902  P-VDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKT 960
              V   D+  FF ++M N+ L  +  AH+  AD S+ GA D  CI LAEL + AVD+ KT
Sbjct: 917  GFVKVSDLRTFFVRYMQNDCLALVAVAHLAQADQSQAGARDGKCIKLAELHSKAVDYVKT 976

Query: 961  GKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVD 1020
                  P +L+PK +P FM ++   +YKS   +G++Y   +D   + +    + D   ++
Sbjct: 977  ADPADFPPYLQPKRWPHFMNRK--NTYKSLSPIGQIYDMIQDQALDPL-YEKKFDNRILN 1033

Query: 1021 IHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRK 1080
                TD       D +  A   K  YD  +  L+    V  E E  TG + S P+  S  
Sbjct: 1034 RFTLTD-------DLLQKARKVKRQYDTSMRRLMSYRDVKTEFEAWTGFVLSRPRVGSDY 1086

Query: 1081 QGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVK 1140
            + +  E +    +AL++ FR++       C   +       F    +A Y+VT   E V 
Sbjct: 1087 KQQ--EDIGRESAALKQRFREI-------CYNEAGSRNYDDFAPFVAAMYKVT--EEQVN 1135

Query: 1141 KSLDLQEQDSA---RSVVLLSFAWIANDYLARI 1170
             +L  + +D     +S+ L+SF WI +  + RI
Sbjct: 1136 AALAKEYEDEEHKRQSMPLISFPWIFHWIMGRI 1168


>gi|115448543|ref|NP_001048051.1| Os02g0736200 [Oryza sativa Japonica Group]
 gi|113537582|dbj|BAF09965.1| Os02g0736200, partial [Oryza sativa Japonica Group]
          Length = 476

 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/465 (47%), Positives = 295/465 (63%), Gaps = 29/465 (6%)

Query: 421 TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
           +  Y   PE+ +SNRV+R +    + FLR++F+DE  + + A  LS   A          
Sbjct: 34  STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSAS-------GH 86

Query: 481 FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540
            + +T ++KRV S+LS G  + G+ F FLAFSSSQLRD SAW F+     +  DI+ WMG
Sbjct: 87  DANRTALYKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMG 146

Query: 541 RFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKITPDL 597
            F + +N+AK AAR+GQ FSS+  T++V   EV+ E+ DIK NG  +VFSDGIGKI+   
Sbjct: 147 DFRNIRNVAKYAARLGQSFSSSTETLKVQKYEVE-EISDIK-NGTQHVFSDGIGKISSAF 204

Query: 598 AMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEI 657
           A EVA K  L     P A+QIRY G KGVVA  P      ++SLR+SM KFQS + T+++
Sbjct: 205 ANEVAMKCNLK-RFAPSAFQIRYGGYKGVVAVDPTSR--WKLSLRKSMLKFQSDNITVDV 261

Query: 658 CSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT-AACA 716
            +++++QPGFLNRQ+ITLLSTL V D +F   Q+  +++LN+M+ D   A E +      
Sbjct: 262 LAYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMG 321

Query: 717 EQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGV 776
           E  N    +L  G+ P  EP+L  +L   RA++L  L+ K+RI +P GR +MGCLDE   
Sbjct: 322 EITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRT 381

Query: 777 LEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDH 836
           L+ GQ FI+ +     N       RF  T K       VVIAKNPCLHPGDIRIL AVD 
Sbjct: 382 LKYGQVFIRATSGVNDN------DRFTVTGK-------VVIAKNPCLHPGDIRILHAVDV 428

Query: 837 PELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
           P LHH+++C+VFPQ+G RPH NE SGSDLDGD+YFV+WD +LIPP
Sbjct: 429 PVLHHMFNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPP 473


>gi|295667341|ref|XP_002794220.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
 gi|226286326|gb|EEH41892.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
          Length = 1273

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 330/1106 (29%), Positives = 512/1106 (46%), Gaps = 101/1106 (9%)

Query: 125  RTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKS 184
            R  T  +LP + VE GT++    F         G   +    D +C+          L  
Sbjct: 145  RYPTATELPAMWVEFGTMLGEKSFLPLRTFDVRGNKGIHLVVDVSCRDLSIYVYVPILSV 204

Query: 185  STEHAVIKCEFKVEFLVREINLVKQYSE-FSCVAILLQLASSPRVWYRTADDDILVLVPF 243
            +  H      F+V F      L ++  E FS V  L    +SP   +R A        P 
Sbjct: 205  THNHGPSFFRFRVPFFQLSTILKEEQPEGFSLVVPL----NSPASCHRQAKFLTDAHFPP 260

Query: 244  D--MLDDDDPWIRTTDF---------TPSGA--------IGRCNSYRISIS--SRHRGKL 282
            D    +  D W R TD          TP+           GR  ++RI  +  + H G  
Sbjct: 261  DENAWNSKDTWSRQTDIVHYPENRAPTPTNLRKQNSYINFGRWTTFRIGFNQYAVHDGNK 320

Query: 283  SKVIT---------YLGERRVQVDSLSRPI-TIREEPD-FEVPMSDPFFCIHYEEG---- 327
              +IT         +      +V   + PI T+ +  D      S P   +         
Sbjct: 321  LDIITNIFKDFNINFQAADGFEVIKKTEPIPTVWKWIDTLSTHRSGPISSLEALADSEYT 380

Query: 328  -ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKR 386
             + F + + +   +    +N++ +   F D L     +     L+++ S K   +D    
Sbjct: 381  PLEFAVRYYLEVCISYRYLNEYAIKKKFVDELARIGEKKAKYLLEYVDSNKIAYYDP--- 437

Query: 387  LKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADR 446
            + +    +   P+     +       +R   +TP+  Y  PP ++  NRVLR+Y++ ADR
Sbjct: 438  MNIFNIRVPNFPDRANNTRTPVGCCYMRSAEVTPSTIYYKPPSIDTGNRVLRRYREYADR 497

Query: 447  FLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKF 506
            FL V F DE  + M   +  Y  A IV    +N       V+ RV   +  G  +  R +
Sbjct: 498  FLHVRFTDE--KNM-GKIFPYSNANIV---CMNE------VYTRVTLTMKNGITIGDRCY 545

Query: 507  SFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATV 565
             FLAFS++QLR+ +A+FF+     +  +I+  +G+F   +N+AK AAR+GQCFSST A  
Sbjct: 546  EFLAFSNAQLREHAAYFFASLPHLTAANIRAQLGKFNQIRNVAKHAARLGQCFSSTRALN 605

Query: 566  EVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV--NPPPCAYQIRYAGC 623
              P   V  E+ DI+RNGY FSDG+G I+  LA  +  +  ++     PP  +Q R  GC
Sbjct: 606  GCPVQIV--EIDDIERNGYTFSDGVGLISTFLAQMIQSEFAIETLSGEPPSVFQFRLGGC 663

Query: 624  KGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPD 683
            KG++    +K     + +R+S  KF + H  LEI   + F    LNRQ+I +LS+L +PD
Sbjct: 664  KGILTV-SSKAHRREVHIRKSQYKFAAPHNGLEIIRHSSFCFASLNRQLIIVLSSLGIPD 722

Query: 684  EMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGM 741
            E+F      ML  L   +   + A  +L         T  +  M+  GF    +P +  +
Sbjct: 723  EIFVKKLQVMLENLELAMTSQEQAVNLLQTYVDPNQMTLVLADMVLDGFQQSQDPFVTSL 782

Query: 742  LTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSK---- 797
            L   R  Q+  L+ KA+I +  G +L+GCLDE G L+G   + +   P  G  + +    
Sbjct: 783  LELWRVWQIKYLKAKAKIAIDKGAFLLGCLDETGSLKG---YFRSKRPGGGATYEQKLDC 839

Query: 798  ------HGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQK 851
                    SR +E    +VI+G  ++A+NP LHPGDIR+++AVD P+LHHL D +V PQ 
Sbjct: 840  LPEIFVQISRHSE-DTYEVIEGLCILARNPSLHPGDIRVVKAVDIPDLHHLKDVVVLPQT 898

Query: 852  GDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDII 909
            GDR   +  SG DLDGD Y V WD++L+P   K W   PM+Y+A +++ L R V   DII
Sbjct: 899  GDRDIASMCSGGDLDGDDYVVIWDQDLLP---KDWFEEPMDYSAPKSEVLDRDVTVDDII 955

Query: 910  EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAH 969
            +FF  +M N+ L  I  AH+  AD+S+ G  DE C+ LA L + AVD+ K+G  V M   
Sbjct: 956  KFFVSYMQNDRLPQIAPAHLAIADYSDDGVQDEKCLRLATLHSAAVDYNKSGMPVHMNRD 1015

Query: 970  LKPKLYPDFMGKEAYQ---SYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIH-YDT 1025
            LKPK +P FM ++  +    Y S KILG+LY  +   Y  ++   S     P D    + 
Sbjct: 1016 LKPKKWPHFMERKFAKKDSQYTSRKILGQLYDIAGGVY-LNLQPHSAKRRLPFDQRILNA 1074

Query: 1026 DLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELK 1085
            + E+ + +  ++ A   K  YD  +  ++ Q+++  EEE+ +  + S    N  K  +  
Sbjct: 1075 NFEIDDKL--LSFAKELKAEYDADIRRIMAQHEIQSEEEVWSTFVLSHA--NMSKDYKFH 1130

Query: 1086 ERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHP-EWVKKSLD 1144
            E +    SALR++FR +       C   +  +        A A Y+VT    E  K +  
Sbjct: 1131 EEIGLISSALRQKFRML-------CHEKAGGKDFKSLAPLAVAMYRVTSEQMEKAKAAHS 1183

Query: 1145 LQEQDSARSVVLLSFAWIANDYLARI 1170
                   + + L+SF W+    L  I
Sbjct: 1184 HCTLGEEQRMPLISFPWVLQPILGMI 1209


>gi|315047102|ref|XP_003172926.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
 gi|311343312|gb|EFR02515.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
          Length = 1455

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 267/809 (33%), Positives = 408/809 (50%), Gaps = 86/809 (10%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQT-MNANVLSYFIAP 471
            +R   +TP+  Y   P V+ SNRV+R Y + ADRFLRV F DE  +  +N+         
Sbjct: 475  MRSATVTPSTIYFHTPTVDTSNRVIRHYIEYADRFLRVRFTDEKYEGRINS--------- 525

Query: 472  IVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTS 531
                 T N+   +  VF RV+  ++ G  +  R + FLAF +SQ R+  A+FF+     +
Sbjct: 526  -----TYNNCMDE--VFTRVKRTMTNGVIVGDRHYEFLAFGNSQFREHGAYFFASLPNLT 578

Query: 532  VLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGI 590
              +I+ WMG F+D K +AK AAR+GQCFSST A    P T    E+ +I+RNGY FSDG+
Sbjct: 579  ASNIRAWMGHFSDIKIVAKHAARLGQCFSSTKAVTGCPVTIR--EIDEIERNGYTFSDGV 636

Query: 591  GKITPDLAMEVAQKLKLDV--NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKF 648
            G+I+  LA  +  + KL      PP  +Q R  GCKG++   P +     + +++S  KF
Sbjct: 637  GRISKFLAQMIMTEFKLKTPSEEPPSVFQFRLGGCKGILTVSP-EAQRREVHIKKSQYKF 695

Query: 649  QSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAF 708
             + H  LEI  W++F   +LNRQ+I +LS L V DE+F      ML  + Q +     A 
Sbjct: 696  AAVHNGLEIIRWSQFAAAYLNRQLIVVLSALGVTDEIFIKKLRLMLEDMEQAMTSETKAM 755

Query: 709  EVLTAACAEQGNTA--AIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRW 766
             +L         T   A M+  GF   ++P +  +L   RA Q+  L+EKA+I +  G  
Sbjct: 756  SLLQKQVDPNQMTLLLAQMVHDGFQGTSDPFVTSLLELWRAWQIKYLKEKAKICIDGGAC 815

Query: 767  LMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET----------KKLQVIKGFVV 816
            L GCLDE   L+G   + + + P +   + +      E           +  ++I+G  +
Sbjct: 816  LFGCLDETATLKG---YHEKTRPSIDATYEERLGYLPEIFVQVFDAEAERNYKIIEGPCI 872

Query: 817  IAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE 876
            +A+NP LHPGDIR++ AV+ P LHHL D +VF Q GDR   +  SG DLDGD Y V WD+
Sbjct: 873  LARNPSLHPGDIRVVRAVNVPALHHLKDVIVFSQTGDRDVPSTCSGGDLDGDDYIVIWDQ 932

Query: 877  NLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADH 934
            +L+ P  K W   PM+Y A+ A++LTR V   DI  FF  +M N+ L  I +AH+  AD 
Sbjct: 933  DLV-PLPKDWFRQPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADF 991

Query: 935  SEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKE---AYQSYKSNK 991
             E G  D+ C+ LA+L + AVD+ K+G    M   L P+ +P FM K+       Y S K
Sbjct: 992  LEDGVNDKRCVQLAQLHSAAVDYNKSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYHSKK 1051

Query: 992  ILGRLYRQSKDAYDEDISVSSEVDINP-VDIHYDTDL---EVPESVDFIADAWNQKCSYD 1047
            ILG++Y            +   V+  P ++  +D  +   ++  S + +  A   K  YD
Sbjct: 1052 ILGQIY-----------DIVERVEFRPKLEAPFDERILNCDISVSEEMVLAAKKLKALYD 1100

Query: 1048 GQLNGLLEQYKVNREEELVTGHIWS---MPKYNSRKQGELKERLKHSYSALR-------- 1096
              +  ++ Q+++  E E     +WS   +   N  K  +  E L    SALR        
Sbjct: 1101 ADMRRIMAQHEIKTEFE-----VWSTFVLGHANMSKDYKFHEELGQISSALRERFLLMCH 1155

Query: 1097 -----KEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSA 1151
                 K+F+ +     +   + +++   AL + ++S  + V    + +KK+      D  
Sbjct: 1156 DEAGGKDFQHLAPLAVAMYRVTAQEVAEALGKEESSPGHDVG---DAIKKAYKHLSND-- 1210

Query: 1152 RSVVLLSFAWIANDYLARIKIRCREMANI 1180
              + L+SF W+    L +I  R  + A I
Sbjct: 1211 -QLPLISFPWVLQPVLGKIANRHFDDAGI 1238


>gi|258573507|ref|XP_002540935.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237901201|gb|EEP75602.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1521

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 282/876 (32%), Positives = 432/876 (49%), Gaps = 80/876 (9%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            + + + + +   +  G+++++ +   F   L           L+H+   K   +D  K  
Sbjct: 492  LPYSVRYQLEVCLSHGLLSEYTIGKDFTTTLAALGETNARELLEHVAGEKLVYYDPMKIF 551

Query: 388  KLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRF 447
             ++    +K     + PK       +R   +TP+  Y   P V++SNRV+R Y + ADRF
Sbjct: 552  DIL---FVKPATSRRIPKYC---CYMRTARVTPSTVYFNTPSVDISNRVIRHYIEYADRF 605

Query: 448  LRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFS 507
            LRV F DE  +                 I+ +  +    VF R++  +  G  L  R + 
Sbjct: 606  LRVRFTDERFEGR---------------ISPSHNNTMDEVFTRIKRAMMNGITLGDRHYE 650

Query: 508  FLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVE 566
            FLAF +SQ R+  A+FF+     +  +I+ WMG F+D K IA+ AAR+GQCFS+T A   
Sbjct: 651  FLAFGNSQFREHGAYFFASLPHLTASNIRAWMGHFSDIKEIARHAARLGQCFSTTRAVTG 710

Query: 567  VPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQ--KLKLDVNPPPCAYQIRYAGCK 624
             P  ++  E+ DI+RNG+ FSDG+G+I+  LA  +    K+K     PP  +Q R  GCK
Sbjct: 711  CP-VQIR-EIEDIERNGHTFSDGVGRISRFLAQMIMTEFKIKTPCGEPPSVFQFRLGGCK 768

Query: 625  GVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDE 684
            G++   P +     + +R+S  KF + H  LE+   + F    LNRQ+I +LS L VPDE
Sbjct: 769  GILTVSP-EAQRREVHIRKSQYKFPAIHNGLEVIRHSHFSMASLNRQLIVVLSALEVPDE 827

Query: 685  MFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGML 742
            +F      ML  L   +     A  +L         T  +  M+  GF    EP +  +L
Sbjct: 828  IFIEKLRVMLENLELAMSSEAQAIHLLHKYVDPNQMTLVLAEMVQDGFQASKEPFVTSLL 887

Query: 743  TCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSK----- 797
               RA Q+  L+EKA+I +  G  L GCLDE G L+G   F     P     + +     
Sbjct: 888  ELWRAWQIKYLKEKAKIIIEDGACLFGCLDETGTLKG---FFNDKIPAANASYEEKLESL 944

Query: 798  -----HGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKG 852
                   SR     K +VI+G  ++A+NP LHPGDIR+++AV+ P LHHL D +VFPQ G
Sbjct: 945  PEVFVQISRADNGGKYEVIEGPCIVARNPSLHPGDIRVVKAVNVPALHHLKDVVVFPQTG 1004

Query: 853  DRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEY-NAAEAKTLTRPVDQRDII 909
            D+   +  SG DLDGD Y + WD++L+P   K+W   PM+Y  + +A  L+R V   DI 
Sbjct: 1005 DKDVPSMCSGGDLDGDDYLIIWDQDLLP---KNWFRQPMDYVPSTKAHCLSRDVTVNDIT 1061

Query: 910  EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAH 969
             FF  +M N+ L  I  AH+  AD+ E G  D  C+ LAEL + AVD+ KTG    M   
Sbjct: 1062 SFFVTYMKNDRLPQIALAHLAWADYLERGVNDPKCMQLAELHSAAVDYNKTGIPAKMTKD 1121

Query: 970  LKPKLYPDFMGKE---AYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP-VDIHYDT 1025
            L P+ +P FM K+       Y S KILG+LY + +            VD  P ++  +D 
Sbjct: 1122 LIPRKWPHFMEKKHKPKEAQYISQKILGQLYDRLE-----------RVDYRPKLEADFDE 1170

Query: 1026 DL---EVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQG 1082
             +    +  S D +A A   K  YD  +  ++ Q+++N E E+ +  + S    N  K  
Sbjct: 1171 RILSSGIETSDDLLAMATELKTLYDADMRRIMAQHEINTEFEVWSTFVLS--HANMSKDY 1228

Query: 1083 ELKERLKHSYSALRKEFRQV-FEKMDS-DCELLSEDEKNALFE------RKASAWYQVTY 1134
            +  E +    SALR+ FR + FEK    D E L+     A+++       +A A  +  Y
Sbjct: 1229 KFHEEIGQIASALRERFRVLCFEKAGGKDFEHLAP-LAVAMYKVTCNEMTQALAASKARY 1287

Query: 1135 HPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARI 1170
              E   +S+ ++ ++    +  +SF W+    L +I
Sbjct: 1288 SDETGIQSVSIKHEE---KLPFISFPWVLQPVLGKI 1320


>gi|322701339|gb|EFY93089.1| suppressor of ascus dominance [Metarhizium acridum CQMa 102]
          Length = 1296

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 302/987 (30%), Positives = 460/987 (46%), Gaps = 144/987 (14%)

Query: 250  DPWIRTTDFTPSGA------------------IGRCNSYRISISSRHRGKLSKVITYLGE 291
            D W R TD +P                     IGR  ++R+S   +       V     E
Sbjct: 251  DTWQRATDISPVSNDAHPISIHNEAQFDDYIDIGRWTTFRLSFDPK-----GCVFDTKTE 305

Query: 292  RRVQVDSLSRPITIREEPDFEVPMSDPFFCIHYEEGIS--FEIMFLVNAVMHKGIINQHQ 349
                 D L  P+         VP S P   +   + I   FE+ + +   + +G++N++ 
Sbjct: 306  APSLWDYLEHPLA--------VPASQPSALLSMPQKIHLPFEVRYQLEVCISRGVLNEYT 357

Query: 350  LSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDD 409
            +   F   L           L+++      +FD  K   +      +D   +    +I  
Sbjct: 358  IGIDFLQELNNLRTMDATHRLEYLVDQNEILFDPMKLFSM------EDATAFVPAARIPH 411

Query: 410  IVE-VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYF 468
                VR+  ITPT      P VE SNRV+RKY  + DRFLRV F++E             
Sbjct: 412  YCTYVRKASITPTTIRFNSPTVETSNRVVRKYSHVQDRFLRVQFVEE------------- 458

Query: 469  IAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDG 528
             + +VR     +     +V+KRV   LS G  +  R++ FLAF SSQLR  SA+FF    
Sbjct: 459  -SELVR--LGKTKYNNVKVWKRVERALSQGIRIGDRQYEFLAFGSSQLRQSSAYFFCPTD 515

Query: 529  KTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSST--YATVEVPPTEVDPELPDIKRNGYV 585
              S  DI+ WMG+F   K +AK AAR+GQCFS+T     + VP  +    + DI+RNG  
Sbjct: 516  HLSCEDIRAWMGQFDHIKCVAKYAARLGQCFSTTRDIKGIWVPDIKY---IDDIQRNGQC 572

Query: 586  FSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESM 645
            F+DG+G I+  L+  + +++ LD+   P A+Q R  GCKGV+A WP +  G+ + +R+S 
Sbjct: 573  FTDGVGLISKFLSQLIMEEMTLDIFDKPTAFQFRMGGCKGVLAVWP-QAQGMEVHIRKSQ 631

Query: 646  NKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSD 705
             KF+S+   LEI          LNRQ IT+L +L V  ++F  +    +S       D+ 
Sbjct: 632  EKFKSNFQALEIVRCAARSTATLNRQTITILESLGVRKKIFMELLKEQISWYENATKDTS 691

Query: 706  VAFEVLTAACAEQGNTAAI--MLSAGFNPQT--EPHLRGMLTCIRAAQLWGLREKARIFV 761
             A ++LT    E  ++  +  +L AGF      E     +     +     L+EK RI V
Sbjct: 692  EAIKLLTKFVDENQSSLVLAELLKAGFKTDNIQESFTLNIFNLWLSWSFRLLKEKTRIHV 751

Query: 762  PAGRWLMGCLDELGVLEGG-----------------QCFIQVSEPFLGNCFSKHGSRFAE 804
            P   +++GC+DE G L G                  Q F+Q+++P             + 
Sbjct: 752  PKSAFVLGCVDESGSLRGHSTETEGSSDQLNEKQLPQIFLQLTDP-------------SH 798

Query: 805  TKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSD 864
              K   I+G  ++ +NP LHPGDIR+++AV++P+L HL D +VFP KGDRP     SG D
Sbjct: 799  EGKTNTIQGKCIVGRNPSLHPGDIRVVQAVNNPKLRHLKDVIVFPSKGDRPVPAMLSGGD 858

Query: 865  LDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLG 922
            LDGD +F+ WD+ LIP   + W   PM+Y A   + L R V   D+ EFF  +M N+NLG
Sbjct: 859  LDGDDFFIIWDDRLIP---EEWNHKPMDYEAPSPRQLDRDVTVDDLREFFVNYMKNDNLG 915

Query: 923  TICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKE 982
             I  AH+  AD   YG   + C+ LAEL + AVD+ KTG+       ++P+ +P FM K+
Sbjct: 916  LIAVAHLAFADM--YGPKSQICLRLAELHSQAVDYAKTGEPAEFGYKMQPERWPHFMEKK 973

Query: 983  AYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDF----IAD 1038
            +  +Y+S K LG LY         D          P +  +  D  + E  +F    +  
Sbjct: 974  S--TYRSKKALGALY---------DEVAKHTFQFRP-EWGHSFDERILERYEFDKSTLTA 1021

Query: 1039 AWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKE 1098
            A   K  YD  +  L+ QY V  E EL TG  W M   +     + +E L   +  +++ 
Sbjct: 1022 AREIKAQYDSAIRRLMVQYHVETEYELYTG--WVMSNTSISSNYKRQEDLGLEFDVVKQR 1079

Query: 1099 FRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLD------LQEQDSAR 1152
            FR+        C  ++   +    ++  +A Y+VT   E V K+ +      +  Q+ A 
Sbjct: 1080 FRE-------QCCNVAGGSEAPQLDKFVAAMYKVT--EEQVNKARNRGDDEPVSHQNEAD 1130

Query: 1153 -------SVVLLSFAWIANDYLARIKI 1172
                   +V L+SF WI +  + R+ +
Sbjct: 1131 PSEELKPNVPLISFPWIFHWVMIRLAM 1157


>gi|358393612|gb|EHK43013.1| hypothetical protein TRIATDRAFT_225118 [Trichoderma atroviride IMI
            206040]
          Length = 1272

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 292/896 (32%), Positives = 438/896 (48%), Gaps = 144/896 (16%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            + F + F +   + + ++N+H +S  F   L         AAL  +        DA  RL
Sbjct: 366  LDFAVRFQLEVCITRRVLNEHTVSLEFLQKL---------AALHPL--------DAKHRL 408

Query: 388  KLV--QEWLLKDP---------ELYKGPKQIDDI-VEVRRLVITPTKAYCLPPEVELSNR 435
            +++  QE ++ +P           Y+   +I    V  R+  +TPT      P VE SNR
Sbjct: 409  EVLVDQEEVVHNPMDIFARRTMAPYRPATRIPHYCVLARKATVTPTSLLLSSPAVETSNR 468

Query: 436  VLRKYKDLADRFLRVTFMDE---GLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVR 492
            VLR +    DRFLRV F+DE   G  TMN++                    K  ++K++ 
Sbjct: 469  VLRYFNQAQDRFLRVQFVDEAESGRMTMNSH-------------------NKEEIWKKLL 509

Query: 493  SILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCA 551
              L  G  +  R++ FLAF SSQLR   A+FF      S  DI++WMG+ +  + +AK A
Sbjct: 510  RTLYEGIQIGDRRYEFLAFGSSQLRQSGAYFFCPTDHISCQDIRQWMGQVSHIRIVAKYA 569

Query: 552  ARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNP 611
            AR+GQCFS+T     VP  +V P + DI+RNGY F+DG+G I+  +A  + ++L L+V  
Sbjct: 570  ARLGQCFSTTREMKGVPIPDVRP-IADIERNGYCFTDGVGMISGFMARMIVEELTLEVFN 628

Query: 612  PPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQ 671
             P A+Q R  GCKGV+  WP +     + +RES  KF++    LEI    ++    LNRQ
Sbjct: 629  DPSAFQFRMGGCKGVLVVWP-QAKKSEVYIRESQEKFKADAKNLEIIKCAKYTSATLNRQ 687

Query: 672  IITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAG 729
             IT+L  L VP + F  + +  +S   +   D+ VA  +L     E  +T  +  +L AG
Sbjct: 688  TITILEHLGVPKKAFMDILEKQISLYEEAAKDNRVAVGMLKKCVDENQSTLVLAELLQAG 747

Query: 730  FNPQT--EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG------- 780
            F  +   EP +  +L   R+  L  L+EKARI +    +++GC+DE G L G        
Sbjct: 748  FKTKNCQEPFVVNLLNLWRSWSLKLLKEKARIAIEQSAFVLGCVDETGTLRGHSNATEGT 807

Query: 781  ---------QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRIL 831
                     Q F+QVS+           S+  +T K  VIKG  V+ +NP LHPGDIR++
Sbjct: 808  SDKDVNKLPQIFLQVSD-----------SKIYDTTK--VIKGICVVGRNPSLHPGDIRVV 854

Query: 832  EAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEY 891
            EAVD PELHHL D +VFP  GDRP  N  SG DLDGD +FV W+ +LI P K + P M Y
Sbjct: 855  EAVDIPELHHLKDVVVFPSTGDRPVPNMLSGGDLDGDDFFVIWEPSLI-PEKWNHPAMNY 913

Query: 892  NAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELA 951
            ++     L R V+  D+ +FF  +M N+ L  I  AH+  AD   +      C+ LAEL 
Sbjct: 914  SSPPPPKLDRDVNVNDLRDFFVNYMKNDVLPLIATAHLALADR--FDPASPICLRLAELH 971

Query: 952  ATAVDFPKTGKIVTMPAHL-KPKLYPDFMGKEAYQSYKSNKILGRLY----RQS------ 1000
            + AVD+PKTG        +  P+ +P FM K+  Q YKS + LG +Y    +Q+      
Sbjct: 972  SKAVDYPKTGDPAEFNHDMYNPQSWPHFMEKQ--QRYKSARALGAIYDRVIKQTIEFRPD 1029

Query: 1001 -KDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKV 1059
             ++A+D+ I    ++D                    +  A   K  YD  +  +L  + +
Sbjct: 1030 WENAFDKRILNRYQLDTG-----------------MLKSARQIKGQYDAAVRRILSHHNL 1072

Query: 1060 NREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQV-FE--------KMD--- 1107
              E EL T   W+M K       + +E L   + A++  FR + FE        K+D   
Sbjct: 1073 GTEFELYTS--WAMTKPAIGSDYKRQEELGREFDAIKDRFRGLCFEAAGGRDEDKIDIFV 1130

Query: 1108 -SDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWI 1162
             +  ++  ++   ALFE +  A  + +        +L    +   +S+ L+SF WI
Sbjct: 1131 AAMYKITEQEIAIALFEHRRGATNEAS--------NLIPARKLETKSMPLISFPWI 1178


>gi|242812975|ref|XP_002486072.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces stipitatus
            ATCC 10500]
 gi|218714411|gb|EED13834.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces stipitatus
            ATCC 10500]
          Length = 1341

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 273/796 (34%), Positives = 408/796 (51%), Gaps = 87/796 (10%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            VR   +TP+  Y   P +E++NRVLR+Y + ADRFLRV F DE  +              
Sbjct: 501  VRTATVTPSMIYWNTPSMEITNRVLRRYSEHADRFLRVRFKDEKFEG------------- 547

Query: 473  VRDITLNSFSQKT--RVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKT 530
                 +NS    T   +F R++  ++ G  L  RK+ FLAF +SQ R+  A+FF+ D   
Sbjct: 548  ----RINSTHHDTMDEIFSRIKRTMTNGIVLGDRKYEFLAFGNSQFREHGAYFFASDAHV 603

Query: 531  SVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDG 589
            +  +I+ WMG F+D KN+AK AAR+GQCFS+T A +     E+   +PD++R  Y FSDG
Sbjct: 604  TASNIRAWMGEFSDIKNVAKYAARLGQCFSTTRA-INTCRVELK-RIPDVERGPYTFSDG 661

Query: 590  IGKITPDLAMEVAQKLKLDV--NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNK 647
            +G+I+  LA    Q+L +      PP AYQ R  GCKG++     +  G  + +R S  K
Sbjct: 662  VGRISRFLAQMTQQELNIRTADQEPPSAYQFRLGGCKGMLVL-SDEPRGREIEIRPSQEK 720

Query: 648  FQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA 707
            F ++H  LEI  W++F    LNRQ+I +LS+L + D++F      M+S L +       A
Sbjct: 721  FPANHQGLEIIRWSQFSSATLNRQLIAVLSSLGIEDKVFHGKLQRMVSNLEEATHYDRAA 780

Query: 708  FEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGR 765
              +L         T  I  ++S GF    +P +  ++T  +A Q+  L+EKA+I +  G 
Sbjct: 781  MHLLQKYIDPNEMTLVISKIVSDGFLQARDPFITSVITLWKAWQIKYLKEKAKITIEDGA 840

Query: 766  WLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSR---------------FAETKKLQV 810
             ++G +DE   L+G             N    H SR                A+ KK  V
Sbjct: 841  CVLGVMDETATLKGFS---------YENVEKVHLSRDSKLDALPEIFLQVYRADEKKYGV 891

Query: 811  IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
            ++G  ++A+NP LHPGDIR++ AV+  EL HL D +V PQ GDR   +  SG DLDGD Y
Sbjct: 892  VEGVCILARNPSLHPGDIRVVRAVNRSELAHLKDVVVLPQVGDRDIASMCSGGDLDGDDY 951

Query: 871  FVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVV 930
             V WD++LI PS+    PM+Y A +   L R V   DI  FF  +M N++L  I +AH+ 
Sbjct: 952  LVIWDQDLI-PSQWFRTPMDYTAIKGVNLNRAVTVNDITTFFVNYMKNDSLPKIAHAHMA 1010

Query: 931  HADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAY---QSY 987
             AD+ E G     CI LA+L + AVD+ KTG+   +P  L+P+ +P FM K      Q Y
Sbjct: 1011 WADYLEDGVESAKCIRLAQLHSNAVDYNKTGEPAYLPRDLRPRKWPHFMEKNYKPKDQIY 1070

Query: 988  KSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQ----- 1042
             S KILG+LY    DA D        VD +P D     D  V E+   + D   Q     
Sbjct: 1071 HSEKILGQLY----DAVD-------RVDFHP-DFDRPFDKRVLEAGIEVTDEILQFVKEL 1118

Query: 1043 KCSYDGQLNGLLEQYKVNREEELVTGHIWS---MPKYNSRKQGELKERLKHSYSALRKEF 1099
            K  YD  L  ++ Q+++  E E     IWS   +   N  K  +  E L     A++  F
Sbjct: 1119 KVDYDLSLKRIMAQHEIRTEFE-----IWSTFVLGHANLSKDYKFHEELGGITKAIKDRF 1173

Query: 1100 R-QVFEKMDS-DCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLL 1157
            + + + K+   D + ++     A+   + ++   VT   E+ KK  + + + +  ++ ++
Sbjct: 1174 QGECYAKVGGRDFDRIA---PVAVAIYRVTSDEVVTAMGEFRKK--NPEAKPNPENLPMI 1228

Query: 1158 SFAWIANDYLARIKIR 1173
            SFAW+  D L R+ +R
Sbjct: 1229 SFAWLFPDVLGRVALR 1244


>gi|440633273|gb|ELR03192.1| hypothetical protein GMDG_01175 [Geomyces destructans 20631-21]
          Length = 1568

 Score =  395 bits (1014), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 289/886 (32%), Positives = 428/886 (48%), Gaps = 101/886 (11%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG---QSREVNVAALKHIYSYKWPVFDAC 384
            + FE+ + +   + + I+  H ++  F   L       +E     L++I      ++D  
Sbjct: 419  LPFEVRYQLEVCISRNILEVHNITPEFVKELASLVDTDKERATCILEYISEQGKRIYDVM 478

Query: 385  KRLKLVQEWLLKDPE-LYKGPKQIDDI--VEVRRLVITPTKAYCLPPEVELSNRVLRKYK 441
                     + KDP+ L   PK          R+  +TPT  Y   P VE SNRV+RK+ 
Sbjct: 479  S--------IFKDPDALAHSPKSKIPTYCAYTRKATVTPTTIYFSSPTVETSNRVIRKFS 530

Query: 442  DLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTR---VFKRVRSILSGG 498
               DRFLRV F DE  +                   +N+ + K R   +F RV   L  G
Sbjct: 531  AHGDRFLRVQFTDELFEG-----------------RINACADKIRNDQLFTRVYRTLKNG 573

Query: 499  FYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNI-AKCAARMGQC 557
              +  R F FLAF +SQ R+  A+FF      S + I+ WMG+F   N+ AK AAR+G C
Sbjct: 574  IRIGDRHFEFLAFGNSQFRENGAYFFCPTDGLSCVQIRDWMGKFHHINVVAKYAARLGLC 633

Query: 558  FSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQ 617
            FS+T A      T +  EL +++RNGY F+DG+GKI+P L   +A +L L   P     Q
Sbjct: 634  FSTTRAIRNTGMTVL--ELQEVERNGYNFTDGVGKISPFLMKMIATELHLLHEP--SVVQ 689

Query: 618  IRYAGCKGVVACWP-AKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLL 676
             R  GCKG++A  P AKG  I   +R+S  KF + +  LEI   +      LNRQ IT+L
Sbjct: 690  FRMGGCKGILAISPDAKGQEIH--IRKSQTKFTAEYMGLEIIRTSSHSVATLNRQTITIL 747

Query: 677  STLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQT 734
            S L V D +F  M D  LS     + D D A E+L     +   T  I  M+  GF    
Sbjct: 748  SALGVEDHVFNRMLDEQLSNYMDAMNDPDKALELLGRYVDDNHMTMMIASMVLDGFMRTK 807

Query: 735  EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG-------GQCFIQVS 787
            EP +  +L   R+  +  L+EKA+I V  G +++GC DE   L G       G+  I   
Sbjct: 808  EPFVLSLLHLWRSWSIKLLKEKAKIIVEKGAFVLGCTDETQTLRGHSKTTNAGKGTITAE 867

Query: 788  E-PFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCL 846
            +   L   + +   R  + +   +I+G  ++ +NP LHPGDIR+++AVD P LHHL D +
Sbjct: 868  DIDKLPQIYLQVTDR-KDPRHNVIIEGLCLVGRNPSLHPGDIRVVQAVDVPALHHLRDVV 926

Query: 847  VFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTRPVD 904
            VF Q GDR      SG DLDGD +FV WD++L+P   + W   PM+Y A     L RPV+
Sbjct: 927  VFSQLGDRDVPGMCSGGDLDGDDFFVIWDQDLLP---REWNAEPMDYTAPPPVKLDRPVE 983

Query: 905  QRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIV 964
              D++ FF K+M ++ L TI +AH+  +D  ++   D  C+ LA L + AVDF K+G   
Sbjct: 984  INDVMSFFVKYMKSDTLPTIAHAHLALSDQLDFSVRDPKCLELAALHSKAVDFVKSGIPA 1043

Query: 965  TMPAHLKPKLYPDFMGKE---AYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDI 1021
             MP +L+P+ +P FM K+     Q Y S KILG+LY + +            VD  P   
Sbjct: 1044 EMPKYLRPRKWPHFMEKKHKPKEQIYVSKKILGQLYDKVE-----------SVDFIP--- 1089

Query: 1022 HYDTDLE------VPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPK 1075
            HY++  +       PE    +  A   K  YD  +  ++ Q+ +  E E+ T  + S P+
Sbjct: 1090 HYESPFDKRILRAYPEDRAILKLARQIKSQYDTAMRRIMAQHDIETEFEVWTSFVLSKPR 1149

Query: 1076 YNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVT-- 1133
              S  +  ++E +    S L+  F+++       C   +           A+A YQVT  
Sbjct: 1150 VGSDYK--VQEEMGIISSTLKARFKEI-------CVEAAGGSDFKALGPFATAMYQVTCE 1200

Query: 1134 -----YHPEWVKKSLDLQE----QDSARSVVLLSFAWIANDYLARI 1170
                  H     K++  ++    +   +S+ L+SF WI    L RI
Sbjct: 1201 ELAIALHECRTMKTIGGRDVPKRKMEPKSMPLMSFPWIFQSVLGRI 1246


>gi|189202022|ref|XP_001937347.1| RNA-directed RNA polymerase Rdp1 [Pyrenophora tritici-repentis
            Pt-1C-BFP]
 gi|187984446|gb|EDU49934.1| RNA-directed RNA polymerase Rdp1 [Pyrenophora tritici-repentis
            Pt-1C-BFP]
          Length = 1604

 Score =  395 bits (1014), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 259/801 (32%), Positives = 397/801 (49%), Gaps = 80/801 (9%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            + F + + + A +  G + +H ++  F   L    R   V  L+ +   +   +D  +  
Sbjct: 574  LDFTVRYQLEACLSNGYLKEHSITSEFLKKLHSDPRHA-VCLLEKVADKQHTYYDPMEIF 632

Query: 388  KLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRF 447
             +  + L K    Y            R +VITPT  +   P +E SNR++RKY   +DRF
Sbjct: 633  GIQIKSLEKKIPSY--------CTLQRSVVITPTMMHVASPVMETSNRIIRKYAADSDRF 684

Query: 448  LRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFS 507
            +RV F DE  +    ++ +                +   VF RVR  +  G  + GR + 
Sbjct: 685  IRVKFSDEKTEGQLRSMPN---------------GKSGAVFDRVRRAMRHGIVVAGRYYD 729

Query: 508  FLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVE 566
            FLAF +SQ R+  A+FF+     S  DI+  +G FT+ K +AK  AR+GQCFS+T A  +
Sbjct: 730  FLAFGNSQFREHGAYFFAPTSSMSANDIRLSLGDFTNVKTVAKFGARLGQCFSTTRAMSQ 789

Query: 567  VPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLD--VNPPPCAYQIRYAGCK 624
                 + P +P+I RNGY F+DG+GK++P +A   A++L L    + PP  +Q R  GCK
Sbjct: 790  --KVSIKP-IPEIMRNGYTFTDGVGKLSPFVAKMAAEELGLSNAFDDPPSLFQFRLGGCK 846

Query: 625  GVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDE 684
            GV+A  P    G  + +R S  KFQ+    LEI   + F   F NRQII +LS L VPD 
Sbjct: 847  GVLALDPTI-TGTEVHIRPSQQKFQAKFMGLEIIRSSAFATPFFNRQIIVVLSHLGVPDH 905

Query: 685  MFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGML 742
            +    Q  M++     + D  VA + L         T A+  M+  GF    +P +  +L
Sbjct: 906  VIIKKQQEMVNDYETAMTDESVAIQKLRKHIDMNQTTLAMAAMVLDGFMKVQDPFMMSLL 965

Query: 743  TCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG--------------------QC 782
               RA  +  L+EKARI +  G +++GC+DE   L+G                     + 
Sbjct: 966  KLWRACTIKNLKEKARIAIEDGAFVLGCVDETAKLKGHMNDPQSRLDATRDEKLATLPEI 1025

Query: 783  FIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
            F+QV +       +K G         ++I+G  ++A+NP LHPGD+R++ AV+ PEL HL
Sbjct: 1026 FLQVDDT------NKKG-------HYKIIEGVCILARNPSLHPGDLRVVRAVNIPELQHL 1072

Query: 843  YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRP 902
             + +V PQ GDR   N  SG DLDGD Y V WD  LIP +  + PPM++   + + +  P
Sbjct: 1073 KNVVVLPQTGDRDLANMCSGGDLDGDDYMVLWDTALIPKTINA-PPMDFTPEKPEEIEGP 1131

Query: 903  VDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGK 962
            +    + EFF  +M N+ LG I +AH+  AD  + G  D+ C+ LAEL + AVDFPK+G 
Sbjct: 1132 IGAAHMGEFFVTYMKNDTLGQIAHAHLAQADSRDDGVNDQTCLALAELHSKAVDFPKSGL 1191

Query: 963  IVTMPAHLKPKLYPDFMGKE---AYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPV 1019
               M   L+PK +P FM K+    Y+ Y S KILG LY Q +     D     E   NP 
Sbjct: 1192 PAEMNRELRPKKWPHFMEKKHMPEYKIYHSTKILGMLYDQVQLV---DFKPQWE---NPF 1245

Query: 1020 DIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSR 1079
            D       ++ E++    +A   K SYD  L  L+ ++ +  E E  +  ++ +   +  
Sbjct: 1246 DKRILNAFDLEETMK--VEAAKIKSSYDDALRRLMAKHGIRTEFEAWS--VFVLAHNHES 1301

Query: 1080 KQGELKERLKHSYSALRKEFR 1100
            +  +  E    + + L+ ++R
Sbjct: 1302 RDYKFSEEFGRTVATLKDQYR 1322


>gi|13641451|gb|AAK31733.1| suppressor of ascus dominance [Neurospora crassa]
          Length = 1638

 Score =  394 bits (1012), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 290/874 (33%), Positives = 431/874 (49%), Gaps = 80/874 (9%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLR---------GQSR-EVNVAALKHIYSYK 377
            + F++ + +   + +GIIN+H +   F + L          G+ R  + +  +   Y+ K
Sbjct: 444  LPFDVRYQLEVCISQGIINEHNIDRPFLEKLMEFCDNDNSFGKDRARLILEYVADEYAGK 503

Query: 378  WPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVL 437
              +FD  +  K     L   P  +  P        VRR+ ITPT+ Y   P VE +NRV+
Sbjct: 504  R-IFDPMELFK-DHAALAYFPTSFMIPNHC---AWVRRVTITPTRIYFSTPCVEPTNRVI 558

Query: 438  RKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSG 497
            R++K   D F+R+ F DE L+                   + S   +  +F RV  +L  
Sbjct: 559  RQWKHAQDYFIRIQFTDEVLEG-----------------RIKSGEAELPLFLRVYRVLEK 601

Query: 498  GFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQ 556
            G  +    + FLAF +SQ+R+  A+ F E    +   ++ WMGRF+  K IAK AAR+GQ
Sbjct: 602  GVAMGPWHWKFLAFGNSQIREAGAFMFCEQSNLTGDMMRAWMGRFSHIKVIAKYAARLGQ 661

Query: 557  CFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAY 616
            CFS+T     +P   +   +PD++++G+ F+DG+GKI+P LA  VA    +D  PPP AY
Sbjct: 662  CFSTTRLVPGIPAPRI-VTIPDVEKDGFCFTDGVGKISPLLAKIVAHDWSID--PPPSAY 718

Query: 617  QIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLL 676
            Q R  GCKGV+  WP    G+ + +R+S  KF +    LE+   ++F    LNRQII +L
Sbjct: 719  QFRMGGCKGVLVTWP-DVKGMEVHIRKSQEKFVAEFNGLEVVRCSQFSTATLNRQIIAVL 777

Query: 677  STLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQT 734
            S+L VPD++F  M +  LS  N  + D   A  +L     E   T  I  ML+ GF    
Sbjct: 778  SSLGVPDQVFVDMMEQQLSDFNAAMEDKQKATAILKTFIDENHMTPIIAEMLAYGFMGSQ 837

Query: 735  EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQ----VSEPF 790
            EP +R +L   R+  +  L+EKAR+ V    +++GC+DE G L+G    I+    VS   
Sbjct: 838  EPFVRTLLQLWRSWSIKTLKEKARLNVEKSAFVLGCVDETGTLKGHMKVIEDWKDVSSEK 897

Query: 791  LGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQ 850
            L   F +           +VI G  V+ +NP LHPGDIR++EAVD P L HL D +VFP 
Sbjct: 898  LPQIFLQIPDDV--NGGYRVITGTCVVGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPL 955

Query: 851  KGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIE 910
             GDR   +  SG DLDGD +FV WD  LI P ++S PPM       K L       ++I 
Sbjct: 956  TGDRDVPSMCSGGDLDGDDFFVIWDPLLI-PKERSHPPMISEPIAGKELATEPTVNNLIT 1014

Query: 911  FFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHL 970
            FF  +M   NL  I +AH+  AD    G     C+ LA L + AVD+ KTG     P  L
Sbjct: 1015 FFVLYMKYNNLPLIAHAHLATADAEVEGVKSPKCLELASLHSMAVDYVKTGVAAEFPRRL 1074

Query: 971  KPKLYPDFMGKEAYQSYKSNKILGRLYRQSK-DAYDEDISVSSEVDINPVDIHYDTDLEV 1029
             PK +P FM K  + +Y S   LG+LY   K + +D   +     D N +  H       
Sbjct: 1075 DPKTWPHFMEKNRH-TYHSVTALGKLYDMVKRETFDMKENYQLPFD-NRILKHTKCRALR 1132

Query: 1030 PESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLK 1089
              +   +A A   K  YD  +  ++ Q ++  E E+ T  + S P+  S  +  L++ + 
Sbjct: 1133 DGT---LAKARRIKSQYDTAMRRVMCQLEIATEFEVWTAFVMSKPRVGSDYK--LQDNVG 1187

Query: 1090 HSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQD 1149
               SAL++ F+   +K ++  +LLS            SA Y+VTY  E V+ +L   +Q 
Sbjct: 1188 RESSALKQHFKDQCKK-EAGGDLLS----------FVSAMYRVTY--EEVRIALFEAKQP 1234

Query: 1150 SAR-------------SVVLLSFAWIANDYLARI 1170
              R             ++ L+SF W+  D L  +
Sbjct: 1235 HVRPDGRLGTRKITPKTMPLVSFPWLFWDKLGEL 1268


>gi|336463319|gb|EGO51559.1| suppressor of ascus dominance [Neurospora tetrasperma FGSC 2508]
 gi|350297473|gb|EGZ78450.1| suppressor of ascus dominance [Neurospora tetrasperma FGSC 2509]
          Length = 1633

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 286/871 (32%), Positives = 426/871 (48%), Gaps = 74/871 (8%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLR---GQSREVNVAALKHIYSYKWPVFDAC 384
            + F++ + +   + +GIIN+H +   F + L               + I  Y    + A 
Sbjct: 448  LPFDVRYQLEVCISQGIINEHNIDRPFLEKLMEFCDNDNSFGKDRARLILEYVADEY-AG 506

Query: 385  KRLKLVQEWLLKDPELYKGPKQI---DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYK 441
            KR+    E    +  L   P      +    VRR+ ITPT+ Y   P VE +NRV+R+++
Sbjct: 507  KRIFDPMELFKDNAALTYFPTSFMIPNHCAWVRRVTITPTRIYFSTPCVEPTNRVIRQWR 566

Query: 442  DLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYL 501
               D F+R+ F DE L+                   + S   +  +F RV  +L  G  +
Sbjct: 567  HAQDYFIRIQFTDEVLEG-----------------RIKSGEAELPLFLRVYRVLEKGVAM 609

Query: 502  CGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSS 560
                + FLAF +SQ+R+  A+ F E    +   ++ WMGRF+  K IAK AAR+GQCFS+
Sbjct: 610  GPWHWKFLAFGNSQIREAGAFMFCEQSNLTCDMMRAWMGRFSHIKVIAKYAARLGQCFST 669

Query: 561  TYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRY 620
            T     +P   +   +PD++++G+ F+DGIGKI+P LA  VA    +D  PPP AYQ R 
Sbjct: 670  TRLVPGIPAPRII-TIPDVEKDGFCFTDGIGKISPLLAKIVAHDWSID--PPPSAYQFRM 726

Query: 621  AGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLN 680
             GCKGV+  WP    G+ + +R+S  KF +    LE+   ++F    LNRQII +LS+L 
Sbjct: 727  GGCKGVLVTWP-DVKGMEVHIRKSQEKFVAEFNGLEVVRCSQFSTATLNRQIIAVLSSLG 785

Query: 681  VPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEPHL 738
            VPD++F  M +  LS  N  + D   A  +L     E   T  I  ML+ GF    EP +
Sbjct: 786  VPDQVFVDMMEQQLSDFNAAMEDKQKATAILKTFIDENHMTPIIAEMLAYGFMESQEPFV 845

Query: 739  RGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKH 798
            R +L   R+  +  L+EKAR+ V    +++GC+DE G L+G    ++V+E +      K 
Sbjct: 846  RTLLQLWRSWSIKTLKEKARLNVEKSAFVLGCVDETGTLKG---HMKVTEDWKDVPSEKL 902

Query: 799  GSRFAE-----TKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGD 853
               F +         +VI G  V+ +NP LHPGDIR++EAVD P L HL D +VFP  GD
Sbjct: 903  PQIFLQIPDDVNGGYRVITGTCVVGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPLAGD 962

Query: 854  RPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFA 913
            R   +  SG DLDGD +FV WD  LI P ++S PPM       K L       ++I FF 
Sbjct: 963  RDVPSMCSGGDLDGDDFFVIWDPLLI-PKERSHPPMTSEPIAGKELATEPTVNNLITFFV 1021

Query: 914  KHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPK 973
             +M   NL  I +AH+  AD    G     C+ LA L + AVD+ KTG     P  L PK
Sbjct: 1022 LYMKYNNLPLIAHAHLATADAEVEGVKSPKCLELASLHSMAVDYVKTGVAAEFPRRLDPK 1081

Query: 974  LYPDFMGKEAYQSYKSNKILGRLYRQSK-DAYDEDISVSSEVDINPVDIHYDTDLEVPES 1032
             +P FM K  + +Y S   LG+LY   K + +D   +     D N +  H        E+
Sbjct: 1082 TWPHFMEKNRH-TYHSVTALGKLYDMVKRETFDMKENYQLPFD-NRILKHTKCRALRDET 1139

Query: 1033 VDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSY 1092
               +  A   K  YD  +  ++ Q ++  E E+ T  + S P+  S  +  L++ +    
Sbjct: 1140 ---LTKARRIKSQYDTAMRRVMCQLEITTEFEVWTAFVMSKPRVGSDYK--LQDNVGRES 1194

Query: 1093 SALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSAR 1152
            S L++ F+    K ++  +LLS            SA Y+VTY  E V+ +L   +Q   R
Sbjct: 1195 SVLKQHFKDQC-KNEAGGDLLS----------FVSAMYRVTY--EEVRIALFEAKQPHVR 1241

Query: 1153 -------------SVVLLSFAWIANDYLARI 1170
                         ++ L+SF W+  D L  +
Sbjct: 1242 PDGRLGTRKITPKTMPLVSFPWLFWDKLGEL 1272


>gi|451997457|gb|EMD89922.1| hypothetical protein COCHEDRAFT_1138647 [Cochliobolus heterostrophus
            C5]
          Length = 1228

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 292/913 (31%), Positives = 443/913 (48%), Gaps = 124/913 (13%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            +SF + + +   +  G I +H ++  F   L     +  V  L+ +   +   +D  +  
Sbjct: 315  LSFPVRYQLEVCLSNGYIKEHNITIGFLKKLEALESQQAVHILEKVADRQKIYYDPMEIF 374

Query: 388  KLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRF 447
             +  + + +    Y         +  R + ITPT  +   P +E SNR++RKY+  ADRF
Sbjct: 375  DIPIKGIKRKMPSY--------CLLQRSVTITPTMMHVATPVMETSNRIIRKYEADADRF 426

Query: 448  LRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFS 507
            +RV F DE  +    N                   +   VF RV   +  G  + GR + 
Sbjct: 427  IRVRFTDEKNEGQLRN---------------QPNGRAEAVFDRVFRAMKNGIVVAGRYYE 471

Query: 508  FLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYA--- 563
            FLAF +SQ R+  A+F++     S  DI+  +G F   K ++K AAR+GQCFS+T A   
Sbjct: 472  FLAFGNSQFRENGAYFYAPTSSKSANDIRISLGEFDHIKTVSKFAARLGQCFSTTRAMGV 531

Query: 564  TVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLD--VNPPPCAYQIRYA 621
            TVE+  T      PD K N ++F+DG+GK++P LA   AQ+L L      PP  +Q R  
Sbjct: 532  TVELTTT------PDKKHNNFIFTDGVGKLSPFLAQMAAQELGLANAFTDPPSLFQFRLG 585

Query: 622  GCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNV 681
            G KGV+A  P K    ++ +R S  KF++ +T LEI   + F   + NRQII +LS L V
Sbjct: 586  GSKGVLALDP-KLKRNQVKIRPSQYKFRAPYTGLEIIRSSSFATPYFNRQIILVLSYLGV 644

Query: 682  PDEMFWSMQDSMLSKLNQMLVDSDVAFEVL--TAACAEQGNTAAIMLSAGFNPQTEPHLR 739
             D +F   Q+ M++  ++ + D   A + L       +   T A M+  GF    EP + 
Sbjct: 645  QDAVFLRKQEDMMNDYSRAMADETTALQKLRKNIDINQTTLTMAAMVLDGFMGSREPFIM 704

Query: 740  GMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG------------------- 780
             +L   RA  +  L+EKARI +  G +L+GC+DE   L+G                    
Sbjct: 705  SLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETKKLKGHFNDPQSRRDATRDEKLATL 764

Query: 781  -QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
             + F+QVS+P      +  G          +I+G  ++A+NP LHPGD+R++ AV+  EL
Sbjct: 765  PEIFLQVSDP------NSKGHYI-------IIEGICIVARNPSLHPGDVRVVRAVNVEEL 811

Query: 840  HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL 899
            HHL + +VFPQ GDR   N  SG DLDGD Y V WD +L+ P + + PPM++   +A  +
Sbjct: 812  HHLKNVVVFPQTGDRDLANMCSGGDLDGDDYMVLWDTDLL-PERINEPPMDFTPEKAVEI 870

Query: 900  TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
              P+   D+  FF  ++ N+ LG I +AH+  AD +E G  D  C+ LAEL + AVDFPK
Sbjct: 871  DGPISALDMARFFVNYIKNDALGPIAHAHLAQADFNENGVGDPICLELAELHSRAVDFPK 930

Query: 960  TGKIVTMPAHLKPKLYPDFMGKE---AYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDI 1016
            +G    M   L+PK +P FM K+    +Q YKS KILG LY + K     D     E   
Sbjct: 931  SGIPAEMKRELRPKKWPHFMEKKYLSQHQIYKSKKILGLLYDEVKLI---DFEPQWE--- 984

Query: 1017 NPVDIH----YDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWS 1072
            NP D      +D D E+      +  A + K SYD  L  L+ ++ +  E E      WS
Sbjct: 985  NPFDKRILEAFDLDQEL------LDKAASLKLSYDEALRRLMAKHGIKTEFE-----AWS 1033

Query: 1073 M-PKYNSRKQGELK--ERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKA--- 1126
            +    ++ + G+ K  E    + +AL+ +FR       S+C   +E   N  + R     
Sbjct: 1034 VFVLVHNHESGDYKFAEEFGRTIAALKHQFR-------SECSNAAELSDNNDWARLGPFV 1086

Query: 1127 SAWYQVTYHP------EWVK------KSLDLQEQDSARSVVLLSFAWIANDYLARIKI-- 1172
            +A Y VT H       E  K      +++ L+ +D    + L+SF W+    L +I    
Sbjct: 1087 AAMYTVTAHEMENALDECTKTKTVGGRTVPLRIKD-PEHMPLISFPWLFPSELGKIATGG 1145

Query: 1173 RCREMANIDTSKP 1185
            R     N  +S+P
Sbjct: 1146 RTSHQPNRTSSQP 1158


>gi|407918335|gb|EKG11606.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
            MS6]
          Length = 1511

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 262/811 (32%), Positives = 408/811 (50%), Gaps = 89/811 (10%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            + FE+ + +   +   I+N+H ++  F + L    +++  + L+     K   F+     
Sbjct: 352  LEFEVRYQLEVCLSNNILNEHNVTREFVERLAQMDKKMAKSVLEAAMDKKRRFFEPMDIF 411

Query: 388  KLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRF 447
            KL    L K+  L + P      V  R   ITP+      P +E+SNR++R+Y   +DRF
Sbjct: 412  KLP---LRKEAMLKQTPAHC---VYSRSANITPSTITFASPTMEISNRIIREYLRFSDRF 465

Query: 448  LRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFS 507
            LRV F +E  +                 I  +   + T +F RV   L  G  +  R + 
Sbjct: 466  LRVKFTEEKPRG---------------KIRSSRDDKDTELFTRVWRTLRNGIAIGDRHYE 510

Query: 508  FLAFSSSQLRDCSAWFFS-------EDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFS 559
            FLAF +SQ R+  A+FF+       ++   +  DI+  MG F + + +A+ A+RMGQCFS
Sbjct: 511  FLAFGNSQFREHGAYFFAPIEDDLCDENNITPSDIRMLMGDFDEIQEVARYASRMGQCFS 570

Query: 560  STYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKL--KLDVNPPPCAYQ 617
            +T     V       E  DI RNGY+F+DG+GKI+  LA+++AQ+      V  PP  +Q
Sbjct: 571  TTREATSVKAHVSGHE--DIMRNGYIFTDGVGKISAALAVKIAQEFGHPTAVEDPPSVFQ 628

Query: 618  IRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLS 677
             R  GCKGV+A     G    + +R S +KF +    LEI  W++F    LNRQ+I +L 
Sbjct: 629  FRLGGCKGVLAVSKELG-ADEIHIRRSQDKFPAPSEGLEIIKWSQFATATLNRQLIIILD 687

Query: 678  TLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT--AACAEQGNTAAIMLSAGFNPQTE 735
               VP+ +F       LS L + +    VA  +L       +   T A M+  GF    E
Sbjct: 688  ARGVPNGVFMKKLQDQLSDLKKAMTSEVVALRLLQRFVDSNQVSLTLAGMVLDGFMGIKE 747

Query: 736  PHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG--------------- 780
            P L  +L   R   +  L+EKAR+FV  G +L+GCLDE   L G                
Sbjct: 748  PFLMSVLHLWRTWSIKYLKEKARLFVGEGAFLLGCLDETASLHGHFYSEQNWKSLQTNLL 807

Query: 781  -QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
             Q F+QVS+         H  R+      ++I+G  ++A+NP LHPGD+R+++AV+ P+L
Sbjct: 808  PQIFVQVSD-------INHPGRY------KIIEGVCIVARNPSLHPGDVRVVQAVNQPKL 854

Query: 840  HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL 899
            HHL + +VFPQ GDR   N  SG DLDGD Y V WD+ LIP  +K++ PM++   + +T+
Sbjct: 855  HHLKNVVVFPQTGDRDIPNMCSGGDLDGDDYMVVWDKELIP--QKNYKPMDFTPPQKQTV 912

Query: 900  TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
             + V    I +FF +++ N++LG I NAH+  AD  + G + + C+ LA + +TAVD+PK
Sbjct: 913  EK-VTMEHITKFFVEYIKNDSLGVIANAHLAAADFEDEGVMSKRCLELARIHSTAVDYPK 971

Query: 960  TGKIVTMPAHLKPKLYPDFMGK-----EAYQSYKSNKILGRLYRQSKDAYDEDISVSSEV 1014
            +G    M   L P+ YP FM       E  + Y+S KILG+L+   K           EV
Sbjct: 972  SGVAAIMDKRLAPRRYPHFMQNNFRNLENGRCYESKKILGQLFDAVK-----------EV 1020

Query: 1015 DINP-VDIHYDTDLEVPESVD--FIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIW 1071
            D +P  D  +D+ +    +++   +A A   K  YD  +  L+ Q+ +  E E+ +  I 
Sbjct: 1021 DFDPQYDAPFDSRILNAYNLEPATLARAGALKVLYDAAVRRLMAQHDIQTEFEVWSTFI- 1079

Query: 1072 SMPKYNSRKQGELKERLKHSYSALRKEFRQV 1102
             +   N  +   L+E     +  LR+ F+++
Sbjct: 1080 -LKHNNEIRDYSLQEDFGRIWDGLRERFQKL 1109


>gi|330935167|ref|XP_003304850.1| hypothetical protein PTT_17559 [Pyrenophora teres f. teres 0-1]
 gi|311318353|gb|EFQ87064.1| hypothetical protein PTT_17559 [Pyrenophora teres f. teres 0-1]
          Length = 1458

 Score =  391 bits (1005), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 256/758 (33%), Positives = 385/758 (50%), Gaps = 64/758 (8%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREV-----NVAALKHIYSYKWPVFD 382
            + F + + + A +  G + +H ++  F + L   SR        V   +HIY     +F 
Sbjct: 496  LDFTVRYQLEACLSNGYLKEHSITSEFLEKLHSDSRRAICLLEKVVDKQHIYYDPMDIFS 555

Query: 383  ACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRR-LVITPTKAYCLPPEVELSNRVLRKYK 441
               R+K ++             K+I     ++R +VITPT  +   P +E SNR++RKY 
Sbjct: 556  I--RIKSLE-------------KKIPSYCTLQRSVVITPTMMHVASPVMETSNRIIRKYA 600

Query: 442  DLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYL 501
              +DRF+RV F DE  +    ++ +                +   VF RVR  +  G  +
Sbjct: 601  ADSDRFIRVKFSDEKTEGQLRSMPN---------------GKSEAVFDRVRRAMRHGIVV 645

Query: 502  CGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSS 560
             GR + FLAF +SQ R+  A+F++     S  DI+  +G FT  K +AK  AR+GQCFS+
Sbjct: 646  AGRYYEFLAFGNSQFREHGAYFYAPTSSKSADDIRLSLGDFTQIKTVAKFGARLGQCFST 705

Query: 561  TYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLD--VNPPPCAYQI 618
            T A  E    ++ P +PDI+RNG+ F+DG+GK++P +A   A++L L    + PP  +Q 
Sbjct: 706  TRAMRE--KVKITP-IPDIERNGHTFTDGVGKLSPFVAKMAAKELGLSNAFDDPPSLFQF 762

Query: 619  RYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLST 678
            R  GCKGV+A       G  + +R S  KF +    LEI   +     F NRQII +LS 
Sbjct: 763  RLGGCKGVLAL-DLNITGTEVHIRPSQQKFHAKFMGLEIIRSSALATPFFNRQIIVVLSH 821

Query: 679  LNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAAC--AEQGNTAAIMLSAGFNPQTEP 736
            L VPD +    Q  M++     + D  +A + L       +   T A M+  GF    +P
Sbjct: 822  LGVPDHVIIKKQQEMVNDYETAMTDESIALQKLRKHIDMNQSTLTMAAMVLDGFMKIQDP 881

Query: 737  HLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG----QCFIQVSEPFLG 792
             +  +L   RA  +  L+EKARI +  G +++GC+DE   L+G     Q  +  +     
Sbjct: 882  FMMSLLKLWRACTIKNLKEKARIAIEDGAFVLGCVDETAKLKGHMNDPQSRLDATRDEKL 941

Query: 793  NCFSKHGSRFAETKK---LQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFP 849
                +   +  +T K    ++I+G  ++A+NP LHPGD+R++ AV+ PEL HL + +V P
Sbjct: 942  ATLPEIFLQVDDTDKKGHYKIIEGVCILARNPSLHPGDLRVVRAVNIPELRHLKNVVVLP 1001

Query: 850  QKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDII 909
            Q GDR   N  SG DLDGD Y V WD  LIP +  + PPM++   + + +  P+   DI 
Sbjct: 1002 QTGDRDLANMCSGGDLDGDDYMVLWDAALIPKT-INVPPMDFTPEKPEEIDGPISAADIG 1060

Query: 910  EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAH 969
            EFF  +M N+ LG I +AH+  AD    G  DE C+ LAEL + AVDFPK+G    M   
Sbjct: 1061 EFFVTYMKNDTLGQIAHAHLAQADFRADGVNDETCLALAELHSKAVDFPKSGLPAEMDRE 1120

Query: 970  LKPKLYPDFMGKE---AYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTD 1026
            L+P+ +P FM K+    Y+ Y+S KILG LY Q +     D     E   NP D      
Sbjct: 1121 LRPRKWPHFMEKKHISQYKIYRSTKILGMLYDQVQLV---DFKPQWE---NPFDKRVLDA 1174

Query: 1027 LEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEE 1064
             ++  ++   A A   K SYD  L  L+ ++ +  E E
Sbjct: 1175 FDLDATMK--AKAAEIKSSYDDSLRRLMAKHGIRTEFE 1210


>gi|380480880|emb|CCF42174.1| RNA dependent RNA polymerase [Colletotrichum higginsianum]
          Length = 1271

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 274/875 (31%), Positives = 415/875 (47%), Gaps = 100/875 (11%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            + FE+ + +   + +G+++++ ++  F + L    +      L++       V++  +  
Sbjct: 364  LKFEVFYQLEVCISRGVLSEYAITQEFVNQLHRMDKNRAKWMLEYFADQGARVWNPMEMF 423

Query: 388  KLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRF 447
            K  +         +           +R++++TP+  +   P VE SNRVLRKY    DRF
Sbjct: 424  KNEEARFF-----FPNASMPYYCTTIRKVIVTPSTMHFCSPSVEASNRVLRKYSSHQDRF 478

Query: 448  LRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFS 507
            +RV F DE            +   I  D           VF R+   L  G  +  R + 
Sbjct: 479  IRVQFTDE-----------LYKGKIYNDAG-------DEVFDRIYRALKRGIKIGNRIYE 520

Query: 508  FLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYAT-- 564
            FLAF +SQ+R+C+ +FF      +  DI+KWMG F   KN+AK AAR+GQCFS+T     
Sbjct: 521  FLAFGNSQIRECAVYFFCPTDYVTCDDIRKWMGEFNHIKNVAKYAARIGQCFSTTREIRG 580

Query: 565  VEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCK 624
            + VP  E   +  DI+R  Y FSDG+GKI+  LA  V  ++  +    P A+Q R  GCK
Sbjct: 581  ITVPRIE---QAKDIQRGEYCFSDGVGKISKLLAEMVVNEMGQEAVGIPSAFQFRMGGCK 637

Query: 625  GVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDE 684
            G++A WP    G+ + +R S  KF++    LEI    ++    LNRQ IT+L+TL V  E
Sbjct: 638  GMLAVWP-DAKGLEVHIRPSQEKFKAQFNGLEIIKSAQYSVATLNRQTITILTTLGVKSE 696

Query: 685  MFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQ--TEPHLRG 740
                +    +    + + D   A  +L     E   +  I  ++  GF  +   EP +  
Sbjct: 697  PILKLAKQQIQNYEKAMDDQVAATGLLGKYIDENMTSLTIKDLVCWGFMDKEVQEPFVLT 756

Query: 741  MLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG----------------QCFI 784
            +L   R   +  L+EKAR+ +    +L+GCLDE G+L G                 Q F+
Sbjct: 757  ILNLWRIWSMKLLKEKARVIIEQSAFLLGCLDETGILRGHSKATEGKTTRNIHDLPQIFL 816

Query: 785  QVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD 844
            Q+                +E  K   + G  ++ +NP LHPGDIR++EAVD P LHHL +
Sbjct: 817  QIPN--------------SEDGKHYCVTGVCIVGRNPSLHPGDIRVVEAVDVPTLHHLKN 862

Query: 845  CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTRP 902
             +VFP  GDR   +  SG DLDGD +FV W+ +LIP   + W  PPM Y A  AK L R 
Sbjct: 863  VVVFPSIGDRDVPSMLSGGDLDGDDFFVIWNPDLIP---REWHHPPMNYIAPRAKVLRRG 919

Query: 903  -VDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
             V   D+  FF +++ N+ L  +  AH+  ADHS  GA D  C+ LAEL + AVD+ KT 
Sbjct: 920  FVKVSDLRTFFVRYIQNDCLALVATAHLALADHSRVGAKDHRCLKLAELHSKAVDYVKTA 979

Query: 962  KIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPV-D 1020
                 P  L PK +P FM +    +Y+S+  LG++Y   +D             +NP+  
Sbjct: 980  DPAKFPPDLHPKAWPHFMNRRC--TYRSSSALGQIYDMIQDQ-----------SLNPLYG 1026

Query: 1021 IHYDTDL--EVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNS 1078
              +DT +    P S + +  A   K  YD  L  L+    V  E E  TG + S P+  S
Sbjct: 1027 NKFDTRILTRFPLSDEILRKARKVKTQYDTSLRRLMSHRDVQTEFEAWTGFVLSKPRVGS 1086

Query: 1079 RKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEW 1138
              +    E +    SAL++ +R++       C   +       F    +A Y+VT   E 
Sbjct: 1087 DYKQH--EDIGRESSALKQRYREI-------CYKEAGSRHYDDFAPFVAAMYKVT--EEQ 1135

Query: 1139 VKKSLDLQEQDSA---RSVVLLSFAWIANDYLARI 1170
            V  +L  + +D      S+ L SF WI +  + RI
Sbjct: 1136 VNAALAKEYEDEEHKRHSMPLTSFPWIFHWIMGRI 1170


>gi|451852221|gb|EMD65516.1| hypothetical protein COCSADRAFT_354694 [Cochliobolus sativus ND90Pr]
          Length = 1365

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 282/857 (32%), Positives = 420/857 (49%), Gaps = 125/857 (14%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFF---DLLRGQSREV---NVAALKHIYSYKWPVF 381
            +SF + + +   +  G I +H ++  F    +LL  Q        VA  + IY     +F
Sbjct: 404  LSFPVRYQLEVCLSNGYIKEHNITIEFLKNLELLESQQAVQLLEKVADRQKIYYNPMEIF 463

Query: 382  D----ACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVL 437
            D    A KR K+    LL+                 R + ITPT  +   P +E SNR++
Sbjct: 464  DIPIKAMKR-KIPSYCLLQ-----------------RSVTITPTMMHVATPVMETSNRII 505

Query: 438  RKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSG 497
            RKY+  ADRF+RV F DE  +    N                   +   VF RV   +  
Sbjct: 506  RKYEADADRFIRVRFTDEKSEGQLRN---------------QPNGRAEAVFDRVFRAMKN 550

Query: 498  GFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQ 556
            G  + GR + FLAF +SQ R+  A+F++     S  DI+  +G F   + ++K AAR+GQ
Sbjct: 551  GIVVAGRYYEFLAFGNSQFRENGAYFYAPTASKSANDIRMSLGEFDHIRTVSKFAARLGQ 610

Query: 557  CFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLD--VNPPPC 614
            CFS+T A        +   +PD++RNG+VF+DG+GK++P LA   AQ+L L      PP 
Sbjct: 611  CFSTTRAMGVTVKLVI---VPDVERNGFVFTDGVGKLSPFLAQMAAQELGLTNAFTDPPS 667

Query: 615  AYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIIT 674
             +Q R  G KGV+A  P   +G  + +R S  KF++ HT LEI   + F   + NRQII 
Sbjct: 668  LFQFRLGGSKGVLALDP-NLNGNEVHIRRSQYKFRAPHTGLEIIRSSSFATPYFNRQIIL 726

Query: 675  LLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL--TAACAEQGNTAAIMLSAGFNP 732
            +LS L V D +F   Q+ M++  +  + D  +A + L       +   T A M+  GF  
Sbjct: 727  VLSYLGVQDAVFLRKQEDMMNDYSSAMTDEIIALQKLRKNIDINQITLTMAAMVLDGFMG 786

Query: 733  QTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG------------ 780
              EP +  +L   RA  +  L+EKARI +  G +L+GC+DE G L+G             
Sbjct: 787  SREPFIMSLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETGTLKGHLNDPQSRRDATR 846

Query: 781  --------QCFIQVSEPFLGNCFSKHGSRFAETK-KLQVIKGFVVIAKNPCLHPGDIRIL 831
                    + F++VS+P              E+K    +I+G  ++A+NP LHPGD+R++
Sbjct: 847  DEKLATLPEIFLRVSDP--------------ESKGHYIIIEGICILARNPSLHPGDVRVV 892

Query: 832  EAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEY 891
             AV+ P LHHL + +VFPQ GDR   N  SG DLDGD Y V WD +L+ P   + PPM++
Sbjct: 893  RAVNVPALHHLKNVVVFPQTGDRDLANMCSGGDLDGDDYMVLWDRDLV-PELINEPPMDF 951

Query: 892  NAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELA 951
               +   +  P+   D+ +FF  ++ N+ LG I +AH+  AD +E    D  C+ LAEL 
Sbjct: 952  TPEKPLEIDGPISAMDMSKFFVNYIKNDALGPIAHAHLAQADFNEKCIGDAICLELAELH 1011

Query: 952  ATAVDFPKTGKIVTMPAHLKPKLYPDFMGKE---AYQSYKSNKILGRLYRQSKDAYDEDI 1008
            + AVDFPK+G    M   L+P+ +P FM K+    +Q Y S KILG LY + K     D 
Sbjct: 1012 SRAVDFPKSGIPAEMKRELRPRKWPHFMEKKYLSPHQIYNSKKILGLLYDEVKLI---DF 1068

Query: 1009 SVSSEVDINPVDIH----YDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEE 1064
                E   NP D      +D D E+      +  A + K SYD  L  L+ ++ +  E E
Sbjct: 1069 EPQWE---NPFDKRILEAFDLDQEL------LDKAASLKLSYDEALRRLMAKHGIKTEFE 1119

Query: 1065 LVTGHIWSM-PKYNSRKQGELK--ERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNAL 1121
                  WS+    ++ + G+ K  E    + +AL+ +FR        +C   +E   N  
Sbjct: 1120 -----AWSVFVLVHNHESGDYKFAEEFGRTIAALKHQFR-------GECRTAAELSDNND 1167

Query: 1122 FERKA---SAWYQVTYH 1135
            + R     +A Y VT H
Sbjct: 1168 WARLGPFVAAMYTVTAH 1184


>gi|361125379|gb|EHK97425.1| putative RNA-dependent RNA polymerase 1 [Glarea lozoyensis 74030]
          Length = 1213

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 293/922 (31%), Positives = 440/922 (47%), Gaps = 121/922 (13%)

Query: 247  DDDDPWIRTTDFT-----------------PSGAIGRCNSYRISISS--RHRGKLSKVIT 287
            D DD W R TD                   P   IGR  SY    ++  +H    S +  
Sbjct: 54   DFDDGWYRQTDIVYDPYLLGSAPIALQKDRPVIDIGRWTSYVFDFTTDLKHTTLYSNMKQ 113

Query: 288  YLGERRVQVDSLS-------RPI---TIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVN 337
             L +  V +  L+       RP    T+   P F    +D          + FE+ + + 
Sbjct: 114  ALEDHNVDIVPLNELNIISGRPASLWTMINPPQFGQSAADHLAEDSSIISLPFEVRYQLE 173

Query: 338  AVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKD 397
              + + ++N++ L   F + L  +  + + +  ++I  Y        +  K + E L   
Sbjct: 174  VCISRELLNEYNLDREFIEKL-AELAKSDASTARNILEY------VAENDKRIYEPL--- 223

Query: 398  PELYKGPKQIDDIVEV---------RRLVITPTKAYCLPPEVELSNRVLRKY--KDLADR 446
              L+  P+ +   V+          R+  ITP+      P VE +NRVLR Y  ++   R
Sbjct: 224  -HLFNSPEALAFSVKTDIPHYCAYSRKATITPSTILFSSPTVETTNRVLRHYSRENHDGR 282

Query: 447  FLRVTFMDEGLQ-TMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRK 505
            FLRV F DE  +  +N+ V                  +   +F RV   L+ G  +  R 
Sbjct: 283  FLRVQFTDESFEGKINSCVKQ----------------RNDEIFTRVYRTLANGIRIGDRH 326

Query: 506  FSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNI-AKCAARMGQCFSSTYAT 564
            + FLAF +SQ R+  A+FF ED   +  DI+ WMG FT  N+ AK AAR+GQCFS+T A 
Sbjct: 327  YKFLAFGNSQFRENGAYFFCEDEHLTCNDIRDWMGNFTHINVPAKYAARLGQCFSTTRAI 386

Query: 565  VEV-PPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGC 623
              +  PT V   +PDI+   Y +SDG+GKI+P LA  +  +L L V   P A+Q R  GC
Sbjct: 387  NGLSAPTIV--TIPDIEHGKYTYSDGVGKISPFLAQMITAELGLHVAHEPSAFQFRLGGC 444

Query: 624  KGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPD 683
            KG++  WP   D   + +R+S  KF + +  LEI   +++    LNRQ ITLLS L V D
Sbjct: 445  KGILVTWPDAKDR-EVHIRKSQQKFTAVYNGLEIIRCSQYSCATLNRQTITLLSNLGVGD 503

Query: 684  EMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGM 741
             +F  M    LS     + + ++A E+L     +   T  I  M+S+      +P +  +
Sbjct: 504  GVFLKMMKEQLSGYQNAMENDNLAIELLCRFIDDNRMTINIAKMISSDIK---DPFVSSL 560

Query: 742  LTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG----------------GQCFIQ 785
            L   R+  +  L+EKA+I V  G ++ GC+DE   L G                 Q FIQ
Sbjct: 561  LHLWRSWSIKLLKEKAKIVVEKGAFVFGCVDETHTLRGYKAPSTEGDAIPEEQLPQIFIQ 620

Query: 786  VSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDC 845
            V  P  G C  K+           VI+G  ++ +NP LHPGD+RI +A+D P LHHL D 
Sbjct: 621  V--PVHG-CDPKN-------PVYNVIEGICLVGRNPSLHPGDLRICQAIDVPALHHLRDV 670

Query: 846  LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQ 905
            +VFP  GDR   +  SG DLDGD YFV WD++L  P + +  PM+Y+A  AK+   PV  
Sbjct: 671  VVFPSCGDRDVPSMCSGGDLDGDDYFVIWDKDL-QPHEWNCSPMDYDAPPAKSQRNPVAV 729

Query: 906  RDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT 965
            +D+++ F ++M N++L  I +AH+  AD    GA +  CI LA L + AVD+ K+G    
Sbjct: 730  KDLMQHFVRYMKNDSLPQIAHAHLAQADQLPGGAKNPKCIQLAHLHSKAVDYVKSGHAAE 789

Query: 966  MPAHLKPKLYPDFMGKEAY---QSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIH 1022
            MP  L+P+ +P FM K      Q Y+S  ILG+LY Q      E I+   +  + P D  
Sbjct: 790  MPKDLQPRRWPHFMEKRHKRKDQLYESTTILGQLYNQV-----ERINFLPQWKV-PFDRR 843

Query: 1023 YDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNS---- 1078
              T  +  ++   +  A   K  YD  +  ++ Q ++  E E+ +  + S P+  S    
Sbjct: 844  ILTAYKFEDAA--LKKARQLKSKYDVHMRRIMAQQEIKTEFEVWSTFVLSKPRVGSDYKL 901

Query: 1079 -RKQGELKERLKHSYSALRKEF 1099
              + G + E LK  + AL  E+
Sbjct: 902  GEEMGRISEGLKEQFRALVIEY 923


>gi|169595008|ref|XP_001790928.1| hypothetical protein SNOG_00237 [Phaeosphaeria nodorum SN15]
 gi|111070612|gb|EAT91732.1| hypothetical protein SNOG_00237 [Phaeosphaeria nodorum SN15]
          Length = 1523

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 286/908 (31%), Positives = 441/908 (48%), Gaps = 115/908 (12%)

Query: 252  WIRTTDFTPSGA-------------------IGRCNSYRISISSR--HRGKLSKVITYLG 290
            W R TD   SG                    IGR  +YRI + +    + + ++  + L 
Sbjct: 413  WFRETDIVESGVRAAMQERPLMNHKDMAIIDIGRWTTYRILLDNAIFTKPQYTEFASALA 472

Query: 291  ERRVQV---------DSLSRPI--TIREE-----PDFEVPMSDPFFCIHYEEGI--SFEI 332
            +  V++         + ++ P+   ++EE     P  E P S   F   +   I  SF I
Sbjct: 473  DYGVEIKDCSDYDIKNRMASPLWKLLQEETSGTHPHLEAPTSSSGFDELFAGQIYLSFPI 532

Query: 333  MFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQE 392
             + + A +  G + +H ++  F + L    R   V  L+ +   +   +D  +  ++   
Sbjct: 533  RYQLEACLSNGYLKEHTVTAEFLERLAKNPRRA-VYLLEKVVDKQETYYDPMEIFEIRTR 591

Query: 393  WLLKDPELYKGPKQIDDIVEVRR-LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVT 451
              L+        K++     ++R  +ITP+  +   P +E SNR+ R+Y  +ADRFLRV 
Sbjct: 592  GSLE--------KKVPSYCLLQRSAIITPSTIHVASPIMETSNRITREYAAIADRFLRVK 643

Query: 452  FMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAF 511
            F DE  +             ++R I  N  +  T  F RVR  +  G  + GR + FLAF
Sbjct: 644  FSDEKTEG------------VLRSIP-NGKADAT--FDRVRRAMKNGIVVAGRYYEFLAF 688

Query: 512  SSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPT 570
             +SQ R+  A+F++     S  DI+  +GRF   K +AK  AR+GQCFS+T A + V  T
Sbjct: 689  GNSQFREHGAYFYAPTSTKSADDIRSSLGRFDHIKTVAKFGARLGQCFSTTRA-MRVKVT 747

Query: 571  EVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLD--VNPPPCAYQIRYAGCKGVVA 628
             V  ++PDI+RNGY F+DG+GK++  LA   AQ+L L    + PP  YQ R  GCKGV+A
Sbjct: 748  IV--KIPDIERNGYCFTDGVGKLSLFLAQMAAQELGLSNAFDDPPSLYQFRLGGCKGVLA 805

Query: 629  CWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWS 688
              P K  G  + +R S  KF++    LEI   +     F NRQII +LS L VPD +   
Sbjct: 806  LDP-KITGNEVHIRPSQLKFEAKFLGLEIIRSSALATPFFNRQIIVVLSDLGVPDNVLIQ 864

Query: 689  MQDSMLSKLNQMLVDSDVAFEVLTAAC--AEQGNTAAIMLSAGFNPQTEPHLRGMLTCIR 746
             Q  M++   Q + D D A   L       +   T A M+  GF    EP +  +L   R
Sbjct: 865  KQQEMVNDYEQAMTDKDTAIAKLRKHIDMNQTTLTMAGMVIDGFMESREPFMMSLLRLWR 924

Query: 747  AAQLWGLREKARIFVPAGRWLMGCLDELGVLEG--------GQCFIQVSEPFLGNCFSKH 798
            AA +  L+EKARI +  G +++GC+DE G L+G             Q     L   F + 
Sbjct: 925  AATIKNLKEKARIAIEDGAFVLGCVDESGTLKGHLNDPQSRSDASRQDKMQTLPEIFLQV 984

Query: 799  GSRFAETK-KLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHT 857
                A  +   +++KG  V+A+NP LHPGD+R++ AVD P LHHL + +V PQ GDR   
Sbjct: 985  DDTEANKRGHYKIVKGVCVLARNPSLHPGDLRVVRAVDVPALHHLKNVVVLPQTGDRDLA 1044

Query: 858  NEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMV 917
            N  SG DLDGD Y V WD++LIP              E  TL+      DI +FF  +M 
Sbjct: 1045 NMCSGGDLDGDDYMVLWDKDLIP--------------ELITLS------DISDFFVTYMQ 1084

Query: 918  NENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPD 977
            N++LG I  AH+  AD +  G     C+ LA+L + AVD+PK+G    M   L+PK +P 
Sbjct: 1085 NDSLGQIAYAHLAQADVNHEGVGSGTCLELAKLHSQAVDYPKSGIPAQMSQDLRPKRWPH 1144

Query: 978  FMGK---EAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVD 1034
            FM K   +A++ Y+S ++LG+LY Q  +  D      +  D   +D  Y+ D E+     
Sbjct: 1145 FMEKKHLQAHKIYRSTRVLGKLYDQV-ELVDFKPQWENAFDFRILDA-YEVDEEL----- 1197

Query: 1035 FIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSA 1094
             ++ A + K  YD     L+ ++ +  E E  +  ++ +      +  +  E    +  A
Sbjct: 1198 -LSKATDIKALYDEAFKRLMAKHGIRTEFEAWS--VFVLAHNQESRDYKFAEEFGRTMGA 1254

Query: 1095 LRKEFRQV 1102
            L+ +++++
Sbjct: 1255 LKAQYQEI 1262


>gi|398388269|ref|XP_003847596.1| RNA-directed RNA polymerase, partial [Zymoseptoria tritici IPO323]
 gi|339467469|gb|EGP82572.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
          Length = 959

 Score =  384 bits (987), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/723 (34%), Positives = 366/723 (50%), Gaps = 100/723 (13%)

Query: 418  ITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEG----LQTMNANVLSYFIAPIV 473
            ITPT  Y   P +E SNRV+R YK   DRF+RV F DE     LQ+ +   ++       
Sbjct: 237  ITPTTIYFATPVLETSNRVVRNYKKYEDRFMRVKFTDEKHKGQLQSQDGQAMN------- 289

Query: 474  RDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVL 533
                         VF R++  ++ G  +  R + FLAF ++Q R+  A+FF+     +  
Sbjct: 290  ------------EVFSRIKQAMTHGIRVADRHYEFLAFGNAQFREHGAYFFASTPDLNAN 337

Query: 534  DIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPE-LPDIKRNGYVFSDGIG 591
             I++WMG FT  KN+AK  +R+GQC+++T A     P  V+ E +PD++RNGY F+DG+G
Sbjct: 338  MIRQWMGNFTQIKNVAKYISRLGQCYTTTRAI----PHSVNVERIPDVERNGYCFTDGVG 393

Query: 592  KITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSH 651
            KI+P LA  VA   +LD    P  YQ R AGCKGV+A  P+   G+ + +R S  KF + 
Sbjct: 394  KISPLLARMVADHFRLD--NCPSVYQFRMAGCKGVLAVDPSL-KGMTVQIRPSQEKFPAE 450

Query: 652  HTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL 711
               LEIC  ++F    LN Q+I ++S+L VPD +F +    ML+ L   + D ++A ++L
Sbjct: 451  FHGLEICKMSQFSAANLNVQLILVMSSLGVPDNVFVNKYRDMLADLALAMTDEEMALKLL 510

Query: 712  TAACAEQGNTA--AIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLR---EKARIFVPAGRW 766
                     T   A ++  GF    +P     ++C+R  + W L+   EKAR+FV  G +
Sbjct: 511  QKNIDFNQMTIYLATIILDGFMATKDPF---TISCLRLWRSWNLKYLKEKARVFVDQGAF 567

Query: 767  LMGCLDELGVLEGG------------------QCFIQVSEPFLGNCFSKHGSRFAETKKL 808
            + G  DE G L+G                   Q F+Q+ +P     ++            
Sbjct: 568  VFGVTDETGTLQGQFDGFKTDEGDMAVPPTLPQIFLQIPDPNAKGGYT------------ 615

Query: 809  QVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGD 868
             VI+G  + A+NP LHPGDIR++EAVD P LHHL DC+V PQ GDR   N  SG DLDGD
Sbjct: 616  -VIQGPCLFARNPSLHPGDIRMVEAVDVPALHHLKDCVVLPQTGDRDLANMCSGGDLDGD 674

Query: 869  LYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAH 928
             Y + WD +L PP                  T PV   D+  FF  ++ N  LG I + H
Sbjct: 675  DYLICWDADLFPPVSD---------------TGPVTVDDMTSFFVNYIKNNKLGQIASHH 719

Query: 929  VVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYK 988
               AD  + G  +E C+ LA L + AVD+ KTG   T+P  LK K  P +      QSY 
Sbjct: 720  RFWADKEDDGVKNEKCLQLANLHSLAVDYVKTGVPATLPVELKVKARPHWAEARG-QSYT 778

Query: 989  SNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDT-DLEVPESVDFIADAWNQKCSYD 1047
            S K+LG+LY + K    ++   + E+   P D    T D   PE    IA A   K  YD
Sbjct: 779  SRKVLGQLYDEVK---LDNFQPAWEL---PFDARILTADTPTPE---LIAGATEVKAEYD 829

Query: 1048 GQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQV-FEKM 1106
              +  +++QY +  E E+ T  + S   +N     +  E++      LR +F+++ + K 
Sbjct: 830  ETMRRIMKQYGITNEFEVFTTFVQS--HHNDINDYKFYEKIGEVSMNLRDQFKEICYTKA 887

Query: 1107 DSD 1109
             +D
Sbjct: 888  GTD 890


>gi|326481841|gb|EGE05851.1| hypothetical protein TEQG_04860 [Trichophyton equinum CBS 127.97]
          Length = 1579

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 263/802 (32%), Positives = 394/802 (49%), Gaps = 112/802 (13%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQT-MNANVLSYFIAP 471
            +R   +TP+  Y   P V+ SNRV+R Y + ADRFLRV F DE  +  +N+         
Sbjct: 616  MRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADRFLRVRFTDEKYEGRINS--------- 666

Query: 472  IVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTS 531
                 T N+   +  VF RV+  ++ G  +  R + FLAF +SQ R+  A+FF+     +
Sbjct: 667  -----TYNNCMDE--VFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPNLT 719

Query: 532  VLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGI 590
              +I+ WMG F+D K +AK AAR+GQCFS+T A    P T    E+ +++RNGY+FSDG+
Sbjct: 720  AANIRAWMGHFSDIKIVAKHAARLGQCFSTTRAVTGCPVTVR--EIDEVERNGYIFSDGV 777

Query: 591  GKITPDLAMEVAQKLKLDV--NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKF 648
            G+I+  LA  +  + KL      PP  +Q R  G                          
Sbjct: 778  GRISKFLAQMIMTEFKLQTPSEEPPSVFQFRLGG-------------------------- 811

Query: 649  QSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAF 708
             S H  LEI  W++F    LNRQ+I +LS L V DE+F      ML  + Q +     A 
Sbjct: 812  -SIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVSDEIFIQKLRLMLEDMEQAMTSETKAM 870

Query: 709  EVLTAACAEQGNTA--AIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRW 766
             +L         T   A M+  GF    +P ++ +L   RA Q+  L+EKA++F+  G  
Sbjct: 871  SMLQKRVDPNQMTLILAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGAC 930

Query: 767  LMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET----------KKLQVIKGFVV 816
            L GCLDE   L+G   + +   P +   + +      E           KK +VI+G  +
Sbjct: 931  LFGCLDETATLKG---YHEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCI 987

Query: 817  IAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE 876
            +A+NP LHPGDIR++ AV+ P LHHL D +VFPQ GDR   +  SG DLDGD Y V WD+
Sbjct: 988  LARNPSLHPGDIRVVRAVNVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQ 1047

Query: 877  NLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADH 934
            +L+ P  K W   PM+Y A+ A++LTR V   DI  FF  +M N+ L  I +AH+  AD+
Sbjct: 1048 DLV-PLPKDWFREPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADY 1106

Query: 935  SEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKE---AYQSYKSNK 991
             E G  DE CI LA+L + AVD+ K+G    M   L P+ +P FM K+       Y+S K
Sbjct: 1107 LEDGVNDERCIQLAQLHSAAVDYNKSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYQSKK 1166

Query: 992  ILGRLYRQSKDAYDEDISVSSEVDINP-VDIHYDTDL---EVPESVDFIADAWNQKCSYD 1047
            ILG++Y            +   V+  P ++  +D  +   ++  S D +  A   K  YD
Sbjct: 1167 ILGQIY-----------DIVERVEFRPKLEAPFDERILNCDISVSEDMVLAAKKLKSLYD 1215

Query: 1048 GQLNGLLEQYKVNREEELVTGHIWS---MPKYNSRKQGELKERLKHSYSALR-------- 1096
              +  ++ Q+++  E E     +WS   +   N  K  +  E L    SALR        
Sbjct: 1216 ADMRRIMAQHEIKTEFE-----VWSTFVLGHANMSKDYKFHEELGQISSALRDRFLSMCQ 1270

Query: 1097 -----KEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSA 1151
                 ++F+ +     +   + +++  +AL + ++S  + V      +KK       D  
Sbjct: 1271 DEAGGRDFQHLAPLAVAMYRVTAQEVADALGKEESSNGHDVG---NAIKKEYKHLRND-- 1325

Query: 1152 RSVVLLSFAWIANDYLARIKIR 1173
              + L+SF W+    L +I  R
Sbjct: 1326 -QIPLISFPWVLQPVLGKIANR 1346


>gi|261204627|ref|XP_002629527.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
 gi|239587312|gb|EEQ69955.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
          Length = 1633

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 268/801 (33%), Positives = 406/801 (50%), Gaps = 81/801 (10%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            +R   +TP+      P V+ SNRV R +++ ADRFLRV F DE            +I  I
Sbjct: 644  IRSADVTPSTICYDIPSVDTSNRVFRYHREHADRFLRVRFCDEK-----------YIGKI 692

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
              + + NS   + +V+ RV   L  G  +  R++ FLAF +SQLR+  A+FF+     + 
Sbjct: 693  YPNNSGNSQCME-KVYARVLRTLQHGITIGDRRYEFLAFGNSQLREHGAYFFASLPHLTA 751

Query: 533  LDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIG 591
             +I+  MG   + + +AK AAR+GQCFS+T A    P  ++  ++ DI+RNGYVFSDG+G
Sbjct: 752  ANIRAQMGDLNNIRVVAKYAARLGQCFSTTRAVTSCP-VQIK-KIDDIERNGYVFSDGVG 809

Query: 592  KITPDLAMEVAQKL--KLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQ 649
            +++  L   +   L  K     PP  +Q R  GCKG++A  P +     + +R S  KF 
Sbjct: 810  RLSHFLTQMIQSDLGIKTPSGEPPSVFQFRLGGCKGILAVSP-EARQREVHIRRSQFKFP 868

Query: 650  SHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFE 709
            + H  LEI  ++ F    LNRQ+I +LS L  PDE+F +    ML+ L Q + D D A  
Sbjct: 869  ASHNGLEIIRYSHFSYATLNRQLILILSALGTPDEVFIAKLSMMLANLEQAMTDEDKAVS 928

Query: 710  VLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWL 767
            +L         T  +  M+  GF    EP +  +L   R  Q+  L+EKA+I +  G +L
Sbjct: 929  LLQKYVDPNQMTLVLADMIRDGFQGSREPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFL 988

Query: 768  MGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET---------KKLQVIKGFVVIA 818
            +GC+DE   L+G   + + + P   + + +      E           K  VI+G  ++A
Sbjct: 989  LGCIDETKTLKG---YFRSARPKANSTYQERVDCLPEIFVQVWRHSEGKYAVIEGLCILA 1045

Query: 819  KNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENL 878
            +NP LHPGDIR+++AVD P LHHL D +V PQ GDR   N  SG DLDGD Y V WD+++
Sbjct: 1046 RNPSLHPGDIRVVKAVDAPALHHLRDVVVLPQTGDRDLANICSGGDLDGDDYIVIWDKSM 1105

Query: 879  IPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSE 936
            +P     W   PM+  A + + L R V   DI +F+  +M N  L  I  AH+  AD  E
Sbjct: 1106 LP---TDWFHEPMDNCAPKPEVLDRDVTVDDITKFYVNYMQNCCLSQIARAHMALADFQE 1162

Query: 937  YGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMG---KEAYQSYKSNKIL 993
             G  DE CI LA L + AVD+ K+G  V M  +LKPK++P FM    K     Y+S KIL
Sbjct: 1163 DGVKDEKCIQLAALHSAAVDYNKSGIPVRMTRNLKPKVWPHFMERKMKNKNAEYRSAKIL 1222

Query: 994  GRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPE----------SVD--FIADAWN 1041
            G+LY            ++S +DI    I + +  E P+           VD   ++ A +
Sbjct: 1223 GQLY-----------DMASHIDIR-SKIQFLSPEERPQFDKRILKSGIEVDEKLLSVATD 1270

Query: 1042 QKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQ 1101
             K  YD  +  ++ ++++  E E+ +  + S  + ++    +  E +    SALR++F  
Sbjct: 1271 LKMQYDTDMRRIMARHEIETELEVWSTFVLSHSEMSN--DYKFHEDIGRISSALREKFST 1328

Query: 1102 VFEKM--DSDCELLSEDEKNALFERKASAWYQVT---YHPEWVKKSLDLQEQDS-ARSVV 1155
            + ++    +D E L+           A A Y+VT         +KS  L E +   + + 
Sbjct: 1329 LCQEKAGGNDFEHLAP---------LAVAMYKVTSEQMEAAMAEKSAVLIENNKMEKRLP 1379

Query: 1156 LLSFAWIANDYLARIKIRCRE 1176
            L+SF W+    L +I   C E
Sbjct: 1380 LISFPWVLQQVLGKIANGCFE 1400


>gi|327353920|gb|EGE82777.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1672

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 280/887 (31%), Positives = 431/887 (48%), Gaps = 89/887 (10%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            + F + + +   M    IN++ + ++F   L     +     L+H+   K   +D     
Sbjct: 604  LPFSVRYQLEVCMSHRYINEYTIEETFVRRLVQLGEKKAKELLEHVAMNKTIYYDP---- 659

Query: 388  KLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRF 447
              ++ + +  P+     +       +R   +TP+      P V+ SNRV R +++ ADRF
Sbjct: 660  --MEIFNIPFPKGATNGRIPGHCCYIRSADVTPSTICYDIPSVDTSNRVFRYHREHADRF 717

Query: 448  LRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFS 507
            LRV F DE            +I  I  + + NS   + +V+ RV   L  G  +  R++ 
Sbjct: 718  LRVRFCDEK-----------YIGKIYPNNSGNSQCME-KVYARVLRTLQHGITIGDRRYE 765

Query: 508  FLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVE 566
            FLAF +SQLR+  A+FF+     +  +I+  MG   + + +AK AAR+GQCFS+T A   
Sbjct: 766  FLAFGNSQLREHGAYFFASLPHLTAANIRAQMGDLNNIRVVAKYAARLGQCFSTTRAVTS 825

Query: 567  VPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKL--KLDVNPPPCAYQIRYAGCK 624
             P  ++  ++ DI+RNGYVFSDG+G+++  L   +   L  K     PP  +Q R  GCK
Sbjct: 826  CP-VQIK-KIDDIERNGYVFSDGVGRLSHFLTQMIQSDLGIKTPSGEPPSVFQFRLGGCK 883

Query: 625  GVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDE 684
            G++A  P +     + +R S  KF + H  LEI   + F    LNRQ+I +LS L  PDE
Sbjct: 884  GILAVSP-EARQREVHIRRSQFKFPASHNGLEIIRHSHFSYATLNRQLILILSALGTPDE 942

Query: 685  MFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGML 742
            +F +    ML+ L Q + D D A  +L         T  +  M+  GF    EP +  +L
Sbjct: 943  VFIAKLSMMLANLEQAMTDEDKAVSLLQKYVDPNQMTLVLADMIRDGFQGSREPFVSSLL 1002

Query: 743  TCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRF 802
               R  Q+  L+EKA+I +  G +L+GC+DE   L+G   + + + P   + + +     
Sbjct: 1003 ELWRTWQIKYLKEKAKIAIDEGAFLLGCIDESKTLKG---YFRSARPKANSTYQERVDCL 1059

Query: 803  AET---------KKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGD 853
             E           K  VI+G  ++A+NP LHPGDIR+++AVD P LHHL D +V PQ GD
Sbjct: 1060 PEIFVQVWRHSEGKYAVIEGLCILARNPSLHPGDIRVVKAVDAPALHHLRDVVVLPQTGD 1119

Query: 854  RPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIEF 911
            R   N  SG DLDGD Y V WD++++P     W   PM+  A + + L R V   DI +F
Sbjct: 1120 RDLANICSGGDLDGDDYIVIWDKSMLP---TDWFHEPMDNCAPKPEVLDRDVTVDDITKF 1176

Query: 912  FAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK 971
            +  +M N  L  I  AH+  AD  E G  DE CI LA L + AVD+ K+G  V M  +LK
Sbjct: 1177 YVNYMQNCCLSQIARAHMALADFQEDGVKDEKCIQLAALHSAAVDYNKSGIPVRMTRNLK 1236

Query: 972  PKLYPDFMG---KEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLE 1028
            PK++P FM    K     Y+S KILG+LY            ++S +DI    I + +  E
Sbjct: 1237 PKVWPHFMERKMKNKNAEYRSAKILGQLY-----------DMASHIDIR-SKIQFLSPEE 1284

Query: 1029 VPE----------SVD--FIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKY 1076
             P+           VD   ++ A + K  YD  +  ++ ++++  E E+ +  + S  + 
Sbjct: 1285 RPQFDKRILKSGIEVDEKLLSVATDLKMQYDTDMRRIMARHEIETELEVWSTFVLSHSEM 1344

Query: 1077 NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKAS---AWYQVT 1133
            ++    +  E +    SALR++F            L  E      FE  A    A Y+VT
Sbjct: 1345 SN--DYKFHEDIGRISSALREKF----------STLCQEKAGGNDFEHLAPLAVAMYKVT 1392

Query: 1134 ---YHPEWVKKSLDLQEQDSA-RSVVLLSFAWIANDYLARIKIRCRE 1176
                     +KS  L E +   + + L+SF W+    L +I   C E
Sbjct: 1393 SEQMEAAMAEKSAVLIENNKMEKRLPLISFPWVLQQVLGKIANGCFE 1439


>gi|336264581|ref|XP_003347067.1| hypothetical protein SMAC_05269 [Sordaria macrospora k-hell]
 gi|380093080|emb|CCC09317.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1703

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 282/873 (32%), Positives = 426/873 (48%), Gaps = 78/873 (8%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLR---GQSREVNVAALKHIYSYKWPVFDAC 384
            + F++ + +   + +GIIN+H +   F + L         +N    + I  Y    + A 
Sbjct: 444  LPFDVRYQLEVCISQGIINEHNIDRPFLEKLTEFCNDDNSLNKDRARLILEYAADEY-AG 502

Query: 385  KRLKLVQEWLLKD-------PELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVL 437
            KR+      L KD       P  +  P        VRR+ ITPT+ Y   P VE +NRV+
Sbjct: 503  KRI-FDPMGLFKDSAAMRYFPSTFIIPNYC---ALVRRVTITPTRIYFSTPYVEPTNRVI 558

Query: 438  RKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSG 497
            R+++   D F+R+ F DE L+                   + S   +  +F R   +L  
Sbjct: 559  RQWRFAQDYFIRIQFTDEVLEG-----------------RIRSGEAELPLFLRAYRVLQE 601

Query: 498  GFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQ 556
            G  +    + FLAF +SQ+R+  A+ F E    +   ++ WMGRF+  K IAK AAR+GQ
Sbjct: 602  GIAMGLWHWKFLAFGNSQIREAGAYMFCEQSDLTCDMMRSWMGRFSHIKVIAKYAARLGQ 661

Query: 557  CFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAY 616
            CFS+T     +P   +   +PD++++G+ F+DG+GKI+P LA  +  +  LD  P   A+
Sbjct: 662  CFSTTRLVPGIPAPRI-VTIPDVEKDGFCFTDGVGKISPLLAKIITHEWSLDRLP--SAF 718

Query: 617  QIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLL 676
            Q R  GCKGV+  WP    G+ + +R+S  KF +    LE+   + F    LNRQ I +L
Sbjct: 719  QFRMGGCKGVLVTWP-DVKGMEVHIRKSQEKFVAEFNGLEVIKCSAFATATLNRQTIAVL 777

Query: 677  STLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQT 734
            S+L VPD++F  M +  LS  N  +VD   A E L     E   T  I  MLS GF    
Sbjct: 778  SSLGVPDQVFVDMMEKQLSDYNAAMVDKRKATEYLRKYVDENHITPIIAQMLSYGFMESQ 837

Query: 735  EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQ----VSEPF 790
            EP +R +L   R+  +  L+EKAR+ V    +++GC+DE   L+G    I+    V    
Sbjct: 838  EPFVRTLLQLWRSWSIKTLKEKARLSVEKSAFVLGCVDESRTLKGHMKVIEGWKDVPSEK 897

Query: 791  LGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQ 850
            L   F +      +  K  VI G  V+ +NP LHPGDIR++EAVD P L H+ D +VFP 
Sbjct: 898  LPQIFLQIPDNVNDGYK--VITGTCVVGRNPSLHPGDIRVVEAVDVPALRHIRDVVVFPL 955

Query: 851  KGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIE 910
             GDR   +  SG DLDGD +FV WD  L+ P+++S PPM       K L       +++ 
Sbjct: 956  TGDRDVPSMCSGGDLDGDDFFVIWDPLLV-PNERSHPPMINEPVVGKELANEPTVNNLVT 1014

Query: 911  FFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHL 970
            FF  +M + NL  I +AH+  AD    G     C+ LA L + AVD+ KTG     P  L
Sbjct: 1015 FFVLYMKHNNLPLIAHAHMATADAEMDGVKSSKCLELAILHSMAVDYVKTGVPAVFPKRL 1074

Query: 971  KPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVP 1030
             PK +P FM K+  + Y S   LG+LY   K     D+  + E+  +   + +     + 
Sbjct: 1075 DPKSWPHFMEKKK-RDYHSATALGKLYDMVKRE-TFDMKENYELPFDSRILKHTKCRALR 1132

Query: 1031 ESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKH 1090
            +    +  A   K  YD  +  ++ Q ++  E E+ T  + S P+  S  + +L+E +  
Sbjct: 1133 DET--LTKARRIKSQYDTAMRRVMCQLEIATEFEVWTAFVMSKPRVGS--EYKLQENVGR 1188

Query: 1091 SYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDS 1150
              SAL++ FR    K ++  +LLS            SA Y+VTY  E V+ +L   +Q  
Sbjct: 1189 ESSALKQHFRDQCRK-EAGGDLLS----------FVSAMYRVTY--EEVRIALHEAKQPH 1235

Query: 1151 AR-------------SVVLLSFAWIANDYLARI 1170
             R             ++ L+SF W+  D L  +
Sbjct: 1236 IRPDGSLGTRRITPKTMPLVSFPWLFWDKLGEL 1268


>gi|218188371|gb|EEC70798.1| hypothetical protein OsI_02249 [Oryza sativa Indica Group]
          Length = 307

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/309 (61%), Positives = 230/309 (74%), Gaps = 2/309 (0%)

Query: 889  MEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLA 948
            M+Y+  EAK L R V Q DII+FF K+M++ENLG ICNAHVVHAD SEYGA+DE CI LA
Sbjct: 1    MDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLA 60

Query: 949  ELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDI 1008
            ELAATAVDFPKTGK+  MP HLKPK+YPDFMGKE  QSYKS KILGRLYR  ++A + D+
Sbjct: 61   ELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNGDV 120

Query: 1009 SVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTG 1068
             VS EV   P D+ YD DLEVP + DF+A AW  KCSYD QL+ LL QY+V  E ELVTG
Sbjct: 121  -VSQEV-CTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTG 178

Query: 1069 HIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASA 1128
            HI S+ K +S+KQG++K+RLK +YSALRKEF+  FE + SD   + +DEKN L+E KASA
Sbjct: 179  HITSLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIDDDEKNLLYEMKASA 238

Query: 1129 WYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNY 1188
            WYQVTYHP+WV+KS  +   D       LSFAWI  DYLARIK+RC     ++  KPV  
Sbjct: 239  WYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARIKLRCHGKVRVEGQKPVER 298

Query: 1189 LARYVADRI 1197
            LA Y+++RI
Sbjct: 299  LAAYISERI 307


>gi|156361828|ref|XP_001625486.1| predicted protein [Nematostella vectensis]
 gi|156212322|gb|EDO33386.1| predicted protein [Nematostella vectensis]
          Length = 531

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/531 (41%), Positives = 302/531 (56%), Gaps = 36/531 (6%)

Query: 547  IAKCAARMGQCFSSTYATVEV-----------PPTEVD------PELPDIKRNGYVFSDG 589
            +A   +RMGQCFSST  +VEV           P  E +      P   +++   Y+FSDG
Sbjct: 14   VAVFVSRMGQCFSSTKKSVEVSLDNGVRIEKIPDVEKEYNNVLFPCCGNVRSGVYIFSDG 73

Query: 590  IGKITPDLAMEVAQKLKLD-VNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKF 648
            IGKI+ DLA +VA+ L L+ V   P AYQIRYAGCKG++A  P+   G  +  R+SM KF
Sbjct: 74   IGKISKDLANKVAKSLGLEAVEMFPSAYQIRYAGCKGMLAVDPSL-RGEVLQYRDSMKKF 132

Query: 649  QSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAF 708
            QS H  LEIC  +R    + NRQ ITLLS L VPD+ F  +QD ML  L  ML+    A 
Sbjct: 133  QSSHKALEICEPSRPSELYFNRQCITLLSGLGVPDDEFIRLQDKMLMDLASMLLYETSAL 192

Query: 709  EVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRW 766
            E L       G   +++  +G     EP  R ML  I  ++L  L  +ARI +P   GR 
Sbjct: 193  ESLGRISIAGGLKVSLIRHSGIVVTCEPFFRSMLLAIYRSRLGDLLRRARIAIPESHGRL 252

Query: 767  LMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPG 826
            LMG LDE G L+ G+ FI+ +   LGN            +   ++ G VV++KNPC HPG
Sbjct: 253  LMGVLDETGSLDYGEVFIRYTTE-LGN----------PGQGYTILTGDVVVSKNPCFHPG 301

Query: 827  DIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW 886
            D+R   AVD P L+HL DC+VFP KG RPHT+E SGSDLDGD YF TW   +IP  + + 
Sbjct: 302  DMRKFNAVDIPALYHLVDCIVFPAKGPRPHTDEMSGSDLDGDKYFATWLRGIIP-DRDNE 360

Query: 887  PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCIL 946
            PPM++   + K L RP++  D+I+F A ++ N+ LG I NAH+VHAD  + G   + CI 
Sbjct: 361  PPMDFYPPKKKMLNRPIEVSDMIQFVADYIKNDQLGVIANAHLVHADSEQDGIFSDKCIK 420

Query: 947  LAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDE 1006
            LA + + AVDFPKTG+   +   L+P+ YPDFM K     Y S+ +LG+L+++       
Sbjct: 421  LAHMHSDAVDFPKTGECPELTKELRPEQYPDFMMKPDKPRYVSHNVLGKLFQKCNSLERA 480

Query: 1007 DISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQY 1057
               ++ +   +  DI  D D+ +     ++ DA  Q+  Y+ +L  L+ +Y
Sbjct: 481  RRFMTGD---STKDITVDQDMILEGHQSYLEDAIEQRDRYNAKLEALMARY 528


>gi|255944161|ref|XP_002562848.1| Pc20g02950 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587583|emb|CAP85624.1| Pc20g02950 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1368

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 335/1163 (28%), Positives = 523/1163 (44%), Gaps = 181/1163 (15%)

Query: 131  KLPDVCVEIGTLVSRDEF-----FVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSS 185
            +L  V V+IG L+    F     F     P    D +       C F + R     ++ S
Sbjct: 152  ELKTVQVDIGVLLGLSTFHSMQSFTNLAYPRCVVDVM-----RKCLFLYFR---VGIRGS 203

Query: 186  TEHAVIKCEFKVEFLVREINLV-KQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFD 244
                V + + +V+    ++  + +QY + +    LL +  S  +W+R A D    L    
Sbjct: 204  DTADVNQHDHRVKITFLQLTQIYQQYDKATRERSLLIVLDSAAIWHRKAKDIQSTLTEPL 263

Query: 245  MLDDDDPWIRTTDFT--------------PSGAI---GRCNSYRISISSRHRGKLSKV-- 285
               ++D W R T  T               +G I   GR N ++IS +      + +V  
Sbjct: 264  SWREEDSWYRQTSVTHNPNSLKTLPANLKKTGHIIDLGRWNVFKISFAPDVDPNVRRVDD 323

Query: 286  -ITYLGERRVQ----------------VDSLSRPITIREEPDFEVPMSDPFFCIHYEEG- 327
               YL   RV+                V+   RP+ +    DF    S+    +  + G 
Sbjct: 324  TSHYL--MRVEEIFKDYNITVQDGSHFVEKADRPVPVWHWIDFSESKSNKASALLQDLGN 381

Query: 328  -----ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFD 382
                 + F++ + +   + +G +++  ++  F + L+G   +     L+         F 
Sbjct: 382  QNYLHLPFKVRYQLEVCLSQGYLSEFTMTREFIETLKGLGDDQATRLLE---------FV 432

Query: 383  ACKRLKLVQEWLLKDPELYKG---PKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRK 439
            A ++ + +    + D + +KG    +  +    +R   ITPT  Y   P V++SNRV+R+
Sbjct: 433  ATEKKQYLAPMEIFDLKFFKGVTDSRIPNYCCFMRTARITPTTIYYNTPTVDISNRVVRE 492

Query: 440  Y--KDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSG 497
            +  K    RFLRV F DE  +                 I  +       V+ RV+  L+ 
Sbjct: 493  WSTKGTPGRFLRVRFTDEKTEGR---------------INASQRGCNDEVYTRVKRTLAN 537

Query: 498  GFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQ 556
            G  +  R + FLAF +SQ R+  A+F + D   S   I+ WMG+F   +N+AK  AR+GQ
Sbjct: 538  GIAIGDRHYEFLAFGNSQFREHGAYFVAPDAGISAGTIRAWMGQFNHIRNVAKYTARLGQ 597

Query: 557  CFSSTYA----TVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQK--LKLDVN 610
            CFS+T A    +V+  P +      DI RNG+ FSDG+GKI+  LA  V  +  +K    
Sbjct: 598  CFSTTRAFTGSSVQTIPCD------DIIRNGFTFSDGVGKISKFLAQMVTSQHDIKTLTG 651

Query: 611  PPPCAYQIRYAGCKG--VVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFL 668
             PP A+Q R  G KG  VV+  P   +   + +R S  KF++    LEI  W+++    L
Sbjct: 652  EPPSAFQFRLGGAKGMLVVSTDPLPQE---VHIRPSQQKFETSQAGLEIIRWSQYSLATL 708

Query: 669  NRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAAC--AEQGNTAAIML 726
            NRQII +LS L +PDE+F S  ++ML   ++ +++   A  +L       +   T A M+
Sbjct: 709  NRQIILVLSALGIPDEVFHSKLNTMLGSFHRAMLNDSKAINLLQKYIDPNQMTLTLAQMV 768

Query: 727  SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG------- 779
            S GF    EP +  ML   ++  L  L+EKA+I +  G  ++G +DE GVL+G       
Sbjct: 769  SDGFRRNEEPFVNTMLELWKSWHLKHLKEKAKIAIDQGANVLGVMDETGVLKGYFRKELP 828

Query: 780  ------GQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEA 833
                   +    + E F+  C    G  +      +VI+G  ++A+NP LHPGDIR++ A
Sbjct: 829  SRRASYAEKLAALPEIFVQVCRLDGGGEY------EVIEGLCILARNPSLHPGDIRVVRA 882

Query: 834  VDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEY 891
            V+  ELH L D +V PQ GD+   +  SG DLDGD Y V WD NLIP    +W    M+Y
Sbjct: 883  VNRSELHALRDVVVLPQTGDQDIASMCSGGDLDGDDYLVIWDPNLIP---ANWFVECMDY 939

Query: 892  NAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELA 951
              ++A  L   V   +I  FF  +M N+ L  I +AH+  AD    G  ++ CI LA+L 
Sbjct: 940  KGSKAPDLDHDVTVDEITSFFVTYMKNDCLPRIAHAHLAWADRLPRGVWEDKCIRLAQLH 999

Query: 952  ATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQS---YKSNKILGRLYRQSKDAYDEDI 1008
            + AVD+ K+G    M   L PK +P FM K   +    YKS KILG+LY         D 
Sbjct: 1000 SDAVDYNKSGAHARMARSLDPKFWPHFMEKRFKRPSSIYKSTKILGQLY---DAVITPDF 1056

Query: 1009 SVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEEL--- 1065
                E    P D         P S  ++  A   K  +D  +  ++ QY++N E E+   
Sbjct: 1057 VPKLE---KPFDSRILESPLAPASEAYMEYARELKAEFDMNMRQIMAQYEINTEFEVWST 1113

Query: 1066 -VTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFR-QVFEKMDSDCELLSEDEKNALFE 1123
             V  H + +  Y      +++E L      LR+ FR Q ++K+  D              
Sbjct: 1114 FVLRHGFVIKDY------KMQEDLGRIVGTLRRGFRHQCYDKVGRD---------GGNIP 1158

Query: 1124 RKASAWYQVTYHPEWVKKSLD------LQEQDSARSVV------LLSFAWIANDYLARIK 1171
                A Y+VT   E V  +L+      LQ +D + + V      L+SF WI  D L  + 
Sbjct: 1159 ALVIAMYRVTQ--EQVAAALEARRNEALQREDVSIAEVNSTELPLISFPWIFPDVLGDVA 1216

Query: 1172 I-RCRE------MANIDTSKPVN 1187
              R R+        + D++KP+ 
Sbjct: 1217 TGRARQAMISDGQESADSAKPIG 1239


>gi|320586448|gb|EFW99118.1| RNA-directed RNA polymerase [Grosmannia clavigera kw1407]
          Length = 2177

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 280/910 (30%), Positives = 430/910 (47%), Gaps = 103/910 (11%)

Query: 323  HYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVF- 381
            H    +SFE+ + +   + +GI+ +H L   F + L   S +     L+++      ++ 
Sbjct: 1011 HLSRQLSFEVSYQLEVCISRGILQEHSLDVVFLESLAALSPDRACRVLEYVAERDKRIYQ 1070

Query: 382  --DACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRK 439
              +  +  K    W    PE        D  V +R+ ++TPT      P +E  NRVLR 
Sbjct: 1071 PHNIFRDPKAASYWRKTPPE---ATLDKDRAVYIRKAIVTPTTIVFSTPALEAGNRVLRH 1127

Query: 440  YKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGF 499
            Y++  DRFLRV F DE    ++   LS    P          ++    F R    L  G 
Sbjct: 1128 YREHHDRFLRVQFTDE----LHIGRLSG--GP--------DTTRTDECFTRAFRALKNGI 1173

Query: 500  YLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCF 558
             + GR F FLAF +SQLR+  A+FF+     +  D++ WMG F++ K +AK AAR+GQC 
Sbjct: 1174 RVGGRHFKFLAFGNSQLRENGAYFFAPTELVTCQDVRDWMGDFSNIKTVAKYAARLGQCL 1233

Query: 559  SST--YATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAY 616
            S+T    T  VP T     +PD++  G+ F+DG+GKI+   A  +A  L+  V+  P A+
Sbjct: 1234 STTRPVPTFGVPTTV--QHIPDVEGGGFCFTDGVGKISKWWARVIASHLR--VSEVPSAF 1289

Query: 617  QIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHH--TTLEICSWTRFQPGFLNRQIIT 674
            Q R  GCKGV+  WP    G  + +R S  KF +      LEI   +      LN+Q I 
Sbjct: 1290 QFRMGGCKGVLVVWPDVPSGQVVQVRPSQEKFPTSDKANVLEIVRCSETATATLNQQTIL 1349

Query: 675  LLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNP 732
            LL+ L +P  +F  + +  L+ ++ ++ D+  A + L     +   T A+  M+ AGF  
Sbjct: 1350 LLTCLGIPTSVFLELLNEELTGIDAVMKDARKAVDQLMVRVDQNHTTHALADMVKAGFMD 1409

Query: 733  QTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG------------ 780
              EP +  +L   R+  L  L+EKARI V    +++GC+DE   L G             
Sbjct: 1410 SDEPFVWALLQLWRSWTLKALKEKARITVERSAFVLGCVDETDTLRGHTNEPERPTNEDT 1469

Query: 781  ---------------QCFIQVS--EPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCL 823
                           Q F+QV   +            + A   K +VI G  ++ +NP L
Sbjct: 1470 RDKIDDKENKIARLPQIFLQVPDLDAVTAGQVRSSIDQDAGHGKYKVIVGLCLVGRNPSL 1529

Query: 824  HPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSK 883
            HPGD+R++EAVD P LHHL D +VFP+ GDR      SG DLDGD YFV WD+ L+PP +
Sbjct: 1530 HPGDLRVVEAVDVPALHHLRDVVVFPRVGDRDIPGMCSGGDLDGDDYFVFWDKRLLPPHR 1589

Query: 884  K-SWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDE 942
              ++  M Y A+    + R V  R +I FF +HM ++ L  I  +H   AD  + GA+  
Sbjct: 1590 VWNYEAMNYEASREPDVDR-VTLRHLISFFVQHMKHDTLPRIALSHRGFADQLDGGAMHP 1648

Query: 943  NCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSK- 1001
             C+ LA+L + AVD+ KTG    +P  L PK +P +M +    +Y+S   LG++Y + K 
Sbjct: 1649 RCLELAQLHSQAVDYAKTGIPALLPHRLNPKQWPHWMNRIQKHTYRSPTALGKIYDRVKV 1708

Query: 1002 DAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNR 1061
            D+++       +V I    +H+  DL+    +D +  A   K  YD  L   + Q ++  
Sbjct: 1709 DSFEPAYDKPFDVRI----LHHYPDLD----IDLLRRARRIKTQYDLALRRAMAQKEIGS 1760

Query: 1062 EEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKN-A 1120
            E E+ TG     P+  S  +    E +   +  +   FR++       C   + DE++  
Sbjct: 1761 EFEMWTGFSIHRPRVGSDYKA--SEDIGRIFKVIMSRFRRL-------CVREAGDERDIT 1811

Query: 1121 LFERKASAWYQVTYHPEWVKKSLDLQEQD--------------------SARSVVLLSFA 1160
                  +A Y+VT   E V+ +L   EQ                     S +S  L+SF 
Sbjct: 1812 RLGPFIAAMYKVTQ--EEVRIALHEFEQSRIRARSRGLHSPGQLLRTRLSQKSAPLISFP 1869

Query: 1161 WIANDYLARI 1170
            W+    LA I
Sbjct: 1870 WLFPHELASI 1879


>gi|18656898|gb|AAL78034.1|AF468822_2 putative RNA-dependent RNA polymerase RDP-1 [Diaporthe perjuncta]
          Length = 1484

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 268/791 (33%), Positives = 397/791 (50%), Gaps = 62/791 (7%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            VRR VITPT  Y   P VEL+NR+LRKY DL DRFLRV F DE                 
Sbjct: 552  VRRAVITPTTIYFKTPCVELTNRILRKYSDLNDRFLRVQFTDE--------------VTF 597

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
             +  +    ++   ++ RV  ++  G  +  R + FLAFS+SQ R+  A+FF E    + 
Sbjct: 598  GKIFSSQDSNKDDNLYTRVHRVMQNGVIIGDRHYKFLAFSNSQFRENGAFFFCETDHVTC 657

Query: 533  LDIKKWMGRFTD-KNIAKCAARMGQCFSSTYAT--VEVPPTEVDPELPDIKR----NGYV 585
              I+ WMG F   +++ K AARMGQCF++T     + +P      ++ DI+R    N + 
Sbjct: 658  ASIRNWMGDFRHIRSVGKFAARMGQCFTTTRQVNGISIPKIR---QIGDIQRRSGDNIWN 714

Query: 586  FSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESM 645
            F+DG+GKI+   A  +A +   D+   P  +Q+R  GCKGVV  WP       + +R S 
Sbjct: 715  FTDGVGKISVFFARMIASER--DLPETPSCFQMRMGGCKGVVVVWP-DIPANEVHIRPSQ 771

Query: 646  NKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSD 705
             KF++ +  LEI   + F    LN+Q+I +L  L V D +F  M D  L + ++ L DS 
Sbjct: 772  EKFKAVYNGLEIIKTSTFAHATLNKQVIPVLIALGVDDAVFVRMLDDELKEYDEALADSM 831

Query: 706  VAFEVLTAACAEQGNTAAIM-LSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAG 764
             A E+L +   E   T  +  +   F    EP L  +L   +   L  L++K  I V   
Sbjct: 832  KAGELLRSQVDENQTTLTMAEMVDTFMDSEEPFLWTLLRLWKCWVLKRLKQKFAISVKNS 891

Query: 765  RWLMGCLDELGVLEG------GQCFIQV-SEPFLGNCFSKHGSRFAETKKLQVIKGFVVI 817
              + G +DE GVL G      G+ F  + S P +       GS    T   +VI G  V+
Sbjct: 892  AMIFGVVDETGVLRGHSQDTEGKGFNNIESLPQIFLQVPIEGSDGKSTTNYEVITGICVV 951

Query: 818  AKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEN 877
             +NP LHPGD+R++EAVD PEL HL + +VFP+ GDR   +  SG D+DGD YFV WDE 
Sbjct: 952  GRNPALHPGDVRVVEAVDVPELRHLKNVVVFPKTGDRDVPSMCSGGDMDGDDYFVYWDER 1011

Query: 878  LIPPSKKSWPPMEYNA-AEAKTLTRPVD--QRDIIEFFAKHMVNENLGTICNAHVVHADH 934
            LI PS+   PP++++A +    L  P D    D+  FFA++M N++LG I  AH   AD 
Sbjct: 1012 LI-PSEWDHPPLDHDADSSTPGLDSPADVTNGDVTRFFAQYMKNDSLGRIATAHFAQADQ 1070

Query: 935  SEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILG 994
               G     CI LA+L + AVD+ K+GK   M  HL+P+ +P +M ++   SY S   LG
Sbjct: 1071 LAGGVKHPKCIELAKLHSKAVDYIKSGKPAVMKRHLQPRNWPHWMERDKKSSYHSRGALG 1130

Query: 995  RLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLL 1054
            ++Y + K    E+   + E+     D    +  ++ E  D +A A   K +YD  +  L 
Sbjct: 1131 QIYDRIK---IEEFHAAYEMSF---DTRILSRYQLEE--DTLAKASEIKAAYDIAMRRLT 1182

Query: 1055 EQYKVNREE-ELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQV-FEKMDSD--- 1109
             Q++    E E+ +  I + P+  S  +  L+E +    +AL+  FR V  E +  D   
Sbjct: 1183 GQHEAPVTEFEIWSTFILTKPRVGSDYK--LQENVGREMAALKARFRAVCMEAVTGDEQT 1240

Query: 1110 --CELLSEDEKNALFERKASAWYQVTYHP------EWVKKSLDLQEQDSARSVVLLSFAW 1161
              C   S        +R  +A Y VT++       E  K   D +       + L+SF W
Sbjct: 1241 PTCASASSKVNLEKLDRFVAAMYTVTHNEVRAAVRERSKPRPDDEGDLEEIQMPLISFPW 1300

Query: 1162 IANDYLARIKI 1172
            + +  LAR+ +
Sbjct: 1301 LYHRELARVAL 1311


>gi|378728086|gb|EHY54545.1| RNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
          Length = 1461

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 300/997 (30%), Positives = 469/997 (47%), Gaps = 130/997 (13%)

Query: 249  DDPWIRTTDF------------TP--------SGAIGRCNSYRISISSRHRGKLSKVITY 288
            DD W R TD             TP        S  I R  ++R++I S      S V  +
Sbjct: 267  DDTWSRQTDIVDDKETYSVINQTPISIQKLYNSIDIARWTTFRVTIPSNADASRSPVRHF 326

Query: 289  LGERRVQVDSLSRPITIREEPDFEV----------------------PMSDPFFCIHYEE 326
            +      ++  + P+T  + P F+V                       +S+    IH   
Sbjct: 327  VQ----ALEDFNVPVT--KNPSFKVLNGTPHGAPLWEMLNDSNNALSSLSEQLSAIH--- 377

Query: 327  GISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKR 386
             + F++ + +   + +G +N++ +   F   L    R+     L H+ SY+  ++D    
Sbjct: 378  -LDFDLRYQLEVCISQGWLNEYTIDKEFLQRLTSLPRQRAKQMLIHVDSYQERIYDP--- 433

Query: 387  LKLVQEWLLKDPELYKG-PKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLAD 445
            + + ++     P   +  P   ++I       +T +      P VE++NR++RKY+   D
Sbjct: 434  MTIFKDLRYSKPVRARALPTNCNEIYHA---TVTASGVLFHTPSVEITNRIIRKYERYND 490

Query: 446  RFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRK 505
            RFLRV F D+  +  +       + P           +   +F+RVR  L  G  +  R 
Sbjct: 491  RFLRVRFEDDSYRGKSR------LYPATN-------GRMRLLFERVRRTLKHGIIIADRH 537

Query: 506  FSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRF-TDKNIAKCAARMGQCFSSTYAT 564
            + FLA+ +SQLR+  A+FF+     +   I++ MG F ++K +AK AARMGQCFS+T A 
Sbjct: 538  YEFLAWGNSQLREHGAYFFASTHDITPDTIRRSMGIFDSEKVVAKRAARMGQCFSTTRAV 597

Query: 565  VEVPPTEVDPEL-PDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGC 623
              +        L  D+  NG+ F+DG+GKI+   A  V   LKL     P AYQ R  GC
Sbjct: 598  SVLSKRAFHKRLIDDVIINGHTFTDGVGKISMLGAQLVCSSLKLR-GKVPSAYQFRLGGC 656

Query: 624  KGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPD 683
            KGV+A  P    G+ + +R S  KFQS    LEI   + F   FLNRQ+I +LS L VPD
Sbjct: 657  KGVLALDPLL-PGVDIKIRPSQYKFQSESDELEIIRVSEFWQPFLNRQLILVLSDLGVPD 715

Query: 684  EMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGM 741
            E+F   Q+  +  L++ +VD   A   L         T +I  M+  GF    E  +  +
Sbjct: 716  EVFLQKQEDCIKALDRAMVDDTAALRALRDNVDPNLTTLSIAAMIEDGFRQSNEIFVTSL 775

Query: 742  LTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQV-SEPF----LGNCFS 796
            L   RA  L  L+EKA+I VP G +++G +DE   L G + F+   SEP     L   F 
Sbjct: 776  LRLYRAWTLKYLKEKAKIPVPQGAFVLGVVDETNKLRGHEPFVSPGSEPPTLQDLPQIFM 835

Query: 797  KHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPH 856
            ++  +   T + ++++G  +IA+NP LH GDIR++ AVD P LHHL D +V P +G+R  
Sbjct: 836  QYTDQ--HTGQRRIVEGVCIIARNPSLHRGDIRVVHAVDIPALHHLCDVVVMPIQGERDL 893

Query: 857  TNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR-PVDQRDIIEFFAKH 915
             +  SG DLDGD Y V WD +LIPP ++ W    ++ A  K + +  +   DII FF  +
Sbjct: 894  PSMCSGGDLDGDDYVVIWDPDLIPP-QEEWFVEPFSYAAPKPVGKDEITTDDIINFFCDY 952

Query: 916  MVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY 975
            M N+ LG I +AH+  AD+ + G   + C+ L  L + AVD+PKTG    MP  L+   +
Sbjct: 953  MQNDFLGRIAHAHLAAADYLDEGIRSDVCLSLVNLHSKAVDYPKTGVPAEMPRELERNKW 1012

Query: 976  PDFMGKEAYQSYKSNKILGRLYRQ-SKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVD 1034
            P FM K     YKS+KILG+LY    + A++ +   S +  I    +        PESV 
Sbjct: 1013 PHFMEKRRAPQYKSHKILGQLYDAVERVAFEPNWEGSFDQRILKHQL-------PPESV- 1064

Query: 1035 FIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSA 1094
             + +    K SYD  +  ++ Q+++N E E+ +  +    K  + +  +  E +      
Sbjct: 1065 -VEEVRRLKKSYDEGMRRIMAQHQINTEFEVWSTFVLHHSK--AARDFKFHEEIGQHART 1121

Query: 1095 LRKEFRQVFEKMDSDCELLSEDEKNALFER---KASAWYQVTYHP-EWVKKSLDLQEQD- 1149
            L++++  V          L E      FE+    A A Y +TY      ++++D    D 
Sbjct: 1122 LKEQYYDV----------LVEHAGGRDFEKLMPMAVAAYHITYDEFRQAQEAVDGSVIDE 1171

Query: 1150 ----------------SARSVVLLSFAWIANDYLARI 1170
                             A+ +  +SF W+  D L RI
Sbjct: 1172 VFSDAAGSRASSAGGPQAKEMPFISFPWVLQDILGRI 1208


>gi|425783248|gb|EKV21105.1| RNA-directed RNA polymerase (Sad-1), putative [Penicillium digitatum
            Pd1]
          Length = 1347

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 320/1114 (28%), Positives = 510/1114 (45%), Gaps = 155/1114 (13%)

Query: 173  CFTRDIAFALKSSTEHAVIKCEFKVEFLVREINLV-KQYSEFSCVAILLQLASSPRVWYR 231
            C        ++ S    V + +++V+    ++  + +QY + +    LL +  S  +W+R
Sbjct: 186  CLLLYFKVGIRGSETADVTQHDYRVKITFLQLTQIYQQYDKATSENSLLIILDSAAIWHR 245

Query: 232  TADDDILVLVPFDMLDDDDPWIRTTDFT--------------PSGAI---GRCNSYRISI 274
             A D    L       ++D W R T  T               +G I   GR N ++I+ 
Sbjct: 246  KAKDMQSTLAEPMSWREEDSWYRQTAVTHNPNSLKTLPTNLKKTGHIMDLGRWNVFKITF 305

Query: 275  SSRHRGKLSKV------ITYLGERRVQ-----------VDSLSRPITIREEPDFEVPMSD 317
                  K+ +V      +T +G+               V+   RP+ +    DF    S+
Sbjct: 306  GPDVDPKIHRVNDTGHCLTLVGDIFKDYNIFIRDGSHFVEKTDRPVPVWHWIDFSESKSN 365

Query: 318  PFFCIHYEEG------ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALK 371
                +  + G      + F++ + +   + +G +++  +S  F + ++    +     L+
Sbjct: 366  KASALLQDLGDQNYIHLPFKVRYQLEVCLSQGYLSEFSMSREFVEKVKDLGDDQATRLLE 425

Query: 372  HIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVE 431
             + + K    D  +   L      K     K P     +   R   +TPT  Y   P V+
Sbjct: 426  FVATEKKQYLDPMEIFDLK---FFKRVTDSKIPSYCCFMHTAR---VTPTTIYYNTPTVD 479

Query: 432  LSNRVLRKY--KDLADRFLRVTFMDEGLQT-MNANVLSYFIAPIVRDITLNSFSQKTRVF 488
            +SNRV+R++  K    RFLRV F DE  +  +NA++                      ++
Sbjct: 480  ISNRVVREWSTKSAPGRFLRVRFTDERTEGRINASL----------------GDSNDEIY 523

Query: 489  KRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNI 547
             RV+  L+ G  +  R + FLAF +SQ R+  A+FF+ D   S   I+ WMG+F   +N+
Sbjct: 524  TRVKRTLANGISIGDRHYEFLAFGNSQFREHGAYFFAPDAGVSAATIRAWMGQFNHIRNV 583

Query: 548  AKCAARMGQCFSSTYA----TVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQ 603
            AK AAR+GQCFS+T A    +V+V          D+ RNG+ FSDG+GK++  LA  V  
Sbjct: 584  AKYAARLGQCFSTTRAFTGSSVQVATCN------DVVRNGFTFSDGVGKVSKFLAQMVTS 637

Query: 604  K--LKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWT 661
            +  +K      P A+Q R  G KG++   P       + +R S  KF++    LEI  W+
Sbjct: 638  QHNIKTLTGESPSAFQFRLGGAKGMLVVSPDPMPQ-EVHIRPSQQKFETTQAGLEIIRWS 696

Query: 662  RFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNT 721
            ++    LNRQ+I +LS L +PD++F S  +SML   ++++ +   A  +L         T
Sbjct: 697  QYSLATLNRQLILVLSALGIPDKVFHSKLNSMLGSFHRVMCNDSKAINLLQKYIDPNQTT 756

Query: 722  A--AIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG 779
               A M+S GF    EP    ML   ++  L  L+EKA+I +  G  L+G +DE GVL+G
Sbjct: 757  LILAQMVSDGFRQNEEPFANTMLELWKSWHLKHLKEKAKIAIDQGANLLGVMDETGVLKG 816

Query: 780  -------------GQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPG 826
                          Q    + E F+  C      R     + +VI+G  ++A+NP LHPG
Sbjct: 817  YFKNTLPRRGASYAQKLAALPEIFVQIC------RLEGNGEYEVIEGLCILARNPSLHPG 870

Query: 827  DIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW 886
            DIR++ AV+ PEL  L D +V PQ GD+   +  SG DLDGD Y + WD +LI P++   
Sbjct: 871  DIRVVRAVNRPELKGLRDVVVLPQTGDQDIASMCSGGDLDGDDYLIIWDPDLI-PTRWFV 929

Query: 887  PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCIL 946
              M+Y  ++A  L   V   +I  FF  +M N+ L  I +AH+  AD    G  +E CI 
Sbjct: 930  ECMDYKGSKAPDLDHDVTVDEITSFFVTYMKNDCLPRIAHAHLAWADRLPRGVWEEKCIR 989

Query: 947  LAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQS---YKSNKILGRLYRQSKDA 1003
            LA+L + AVD+ K+G    M   L PK +P FM K   +    YKS KILG+LY      
Sbjct: 990  LAQLHSDAVDYNKSGAHARMARSLDPKFWPHFMEKRFKRPSSIYKSTKILGQLY------ 1043

Query: 1004 YDEDISVSSEVDINPVDIHYDTD-LEVP---ESVDFIADAWNQKCSYDGQLNGLLEQYKV 1059
               D  V+    +  +   +D+  LE P    S  +I  A   K  +D  +  ++ QY++
Sbjct: 1044 ---DAVVTPNF-VPKLGKPFDSRILESPLASASETYIEYARELKAEFDMNMRQIMAQYEI 1099

Query: 1060 NREEEL----VTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFR-QVFEKMDSDCELLS 1114
            N E E+    V  H + +  Y      +++E L      LR+ FR Q ++K+      +S
Sbjct: 1100 NTEFEVWSTFVLRHGFVIRDY------KMQEDLGRIVGTLRRGFRHQCYDKVGRHGGNIS 1153

Query: 1115 EDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQD------------SARSVVLLSFAWI 1162
                 AL      A Y+VT   E V  +L+ Q ++            S+  + L+SF WI
Sbjct: 1154 -----AL----VIAMYRVTQ--EQVAAALEAQRKEALQREDLSVVEVSSTELPLISFPWI 1202

Query: 1163 ANDYLARIKI-RCREMANIDTSKPVNYLARYVAD 1195
              D L  +   R RE A +   + V+  A+ + D
Sbjct: 1203 FPDVLGDVATGRARE-ALVSEGQGVDDSAKSIGD 1235


>gi|15422180|gb|AAK95829.1| putative RNA-dependent RNA polymerase [Diaporthe ambigua]
          Length = 1483

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 283/900 (31%), Positives = 434/900 (48%), Gaps = 115/900 (12%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSF------FDLLRGQSREVNVAALKHIYSYKWPVF 381
            + F + + +   +  G+++++ +   F      FD  R +     VA     +     +F
Sbjct: 473  LDFPVRYQLEVCISHGLLDEYSIGAQFLGRLISFDTDRARMLLEGVAEANRQFFEPMEIF 532

Query: 382  DACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYK 441
            D  K   ++  W    P     P        VRR VITPT  Y   P VEL+NR+LRKY 
Sbjct: 533  DDPK---ILHYW----PNARTPPY----ATLVRRAVITPTAIYFKSPCVELTNRILRKYS 581

Query: 442  DLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYL 501
            DL DRFLRV F DE     +  + S               ++   +F RV  ++  G  +
Sbjct: 582  DLNDRFLRVQFTDE---ITSGKIFSS-----------QDSTKDDNLFTRVHRVMRNGIVI 627

Query: 502  CGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSS 560
              R + FLAFS+SQ R+  A+FF      +   I++WMG F   +++ K AARMGQCF++
Sbjct: 628  GDRHYRFLAFSNSQFRENGAFFFCNTDHVTCESIREWMGDFRHIRSVGKFAARMGQCFTT 687

Query: 561  TYAT--VEVPPTEVDPELPDIKRNG----YVFSDGIGKITPDLAMEVAQKLKLDVNPPPC 614
            T     + +P      ++ DI++      + F+DG+GKI+P LA  +A +  L   P   
Sbjct: 688  TRQVNGISIPKIR---QIGDIQQQTGDHIWNFTDGVGKISPFLATLIANERNLPETP--S 742

Query: 615  AYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIIT 674
             +QIR  GCKGVV  WP       + +R S  KF++ +  LEI   + F    LN+Q+I 
Sbjct: 743  CFQIRMGGCKGVVVTWPDVPPS-EVHVRPSQEKFKAVYNGLEIIKTSAFSHATLNKQVIP 801

Query: 675  LLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIM-LSAGFNPQ 733
            +L  L V   +F SM DS L++  + L DS  A E+L +   E   T  +  +   F   
Sbjct: 802  VLVALGVDKSVFVSMLDSELTEYEEALADSMRAGELLRSQVDENQTTLTLAEMVDTFMDS 861

Query: 734  TEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG------------- 780
             EP L  +L   +   L  L++K  I V     + G +DE+GVL G              
Sbjct: 862  EEPFLWTLLRLWKCWVLKRLKQKFAISVKNSAMVFGVVDEIGVLRGHSQATEGRRDNNIE 921

Query: 781  ---QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP 837
               Q F+QV            GS    T   +VI G  V+ +NP LHPGD+R++EAVD  
Sbjct: 922  SLPQIFLQVP---------VEGSDGKSTTNYEVITGLCVVGRNPSLHPGDVRVVEAVDAL 972

Query: 838  ELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNA-A 894
            EL HL + +VFP+ GDR   +  SG D+DGD YFV WDE LIP     W  PP++++A +
Sbjct: 973  ELRHLKNVVVFPRTGDRDIPSMCSGGDMDGDDYFVYWDERLIP---LEWYHPPLDHDAES 1029

Query: 895  EAKTLTRPVDQ--RDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAA 952
                L +P D    D+  FFA++M N++LG I  AH   AD    G  +  CI LA+L +
Sbjct: 1030 STPGLDKPEDVTIEDVTRFFAQYMKNDSLGRIATAHFAQADQLSGGVKNPKCIELAKLHS 1089

Query: 953  TAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSS 1012
             AVD+ K+GK   M  HL+P+ +P +M +E   SY S   LG++Y + K    E+   + 
Sbjct: 1090 KAVDYIKSGKPAVMQRHLQPRKWPHWMEREKKSSYPSVSALGQIYNRIK---IEEFHAAY 1146

Query: 1013 EVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREE-ELVTGHIW 1071
            E+   P D+   +  ++ +  D +A+A   K +YD  +  L+ Q++    E E+ +  I 
Sbjct: 1147 EM---PFDVRILSRYQLED--DTLAEAGKIKEAYDIAMRRLMGQHEAPVTEFEIWSTFIL 1201

Query: 1072 SMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNAL---------- 1121
            S P+  S  +  L+E +    +AL++ FR       ++C   +     A           
Sbjct: 1202 SKPRVGSDYK--LQENVGREMAALKERFR-------AECMTAATGNTQAQEFTFSSSMVN 1252

Query: 1122 ---FERKASAWYQVTYHPEWV---KKSLDLQEQDSARSVV---LLSFAWIANDYLARIKI 1172
                +R  +A Y VT++       ++S+   + D     V   L+SF W+ +  LAR+ +
Sbjct: 1253 LEKLDRFVAAMYTVTHNEVRAAARERSMPRPDHDGEPEEVQMPLISFPWLFHRELARVAL 1312


>gi|449301850|gb|EMC97859.1| hypothetical protein BAUCODRAFT_67567, partial [Baudoinia
            compniacensis UAMH 10762]
          Length = 1035

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 268/843 (31%), Positives = 400/843 (47%), Gaps = 104/843 (12%)

Query: 307  EEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFF----DLLRGQS 362
            + P+ +V M +        E ++F++ +   A + +GI ++  +   F     DL   ++
Sbjct: 192  DSPELQVTMHNIV------EILTFDVRYQFEACLSQGIFHECNIRTEFLKKLADLEPARA 245

Query: 363  REVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTK 422
             ++   AL     +  P+ D  + L  V     K P             ++R  VITPT 
Sbjct: 246  TKLLEKALDGRRRFFEPI-DVFRLLNEVSTIEKKRPSY---------CAKIRAAVITPTS 295

Query: 423  AYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFS 482
                 P VE +NR++RKY+ + D FLRV F DE  +    N               NS +
Sbjct: 296  LIISTPVVETTNRIIRKYEHIVDHFLRVKFTDERYKGKVMN---------------NSDN 340

Query: 483  QKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRF 542
             +  +F RV+  L  G  + GR + FLAF +SQ R+  A+FF+     S  DI+  MG F
Sbjct: 341  NQDEIFTRVKRTLQNGIQIAGRHYDFLAFGNSQFRENGAYFFASTPDLSAADIRVAMGTF 400

Query: 543  TD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEV 601
            T    +AK A+R+GQCFS+T          VD  L DI RNGY F+DG+GK++P +A  V
Sbjct: 401  THITTVAKYASRLGQCFSTTRGLSY--RVRVDA-LADITRNGYTFTDGVGKVSPFIAQMV 457

Query: 602  AQKLKL--DVNPPPCAYQIRYAGCKGVVACWPA--KGDGIRMSLRESMNKFQSHHTTLEI 657
            AQ           P   Q R  G KGV+A  P     D + +  R S  KF + +  LEI
Sbjct: 458  AQTFGFPNAFVDYPSVIQFRLGGYKGVLAVDPTLTGKDNMVIQTRPSQMKFPAVYHGLEI 517

Query: 658  CSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAE 717
            C  ++F   +LN+QII +LS   V D++F       L  L   ++D D A + L      
Sbjct: 518  CRLSQFTAAYLNQQIILVLSARGVEDKVFVVKVQQALKDLQDAMIDEDKAKDQLCKKIDY 577

Query: 718  QGNTAAI--MLSAGFNPQTEPHLRGMLTCIRAAQLWG---LREKARIFVPAGRWLMGCLD 772
               T  +  M+  GF    +P    M++C+R  + W    L+EKARIFV  G +++GC D
Sbjct: 578  NHTTLVLAQMIDDGFMAVRDPF---MMSCMRLWRSWMVKYLKEKARIFVDEGAFVLGCTD 634

Query: 773  ELGVLEGG-----------------QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFV 815
            E   L G                  + F+Q+ +       +K GS  A       +KG  
Sbjct: 635  ETTTLRGDFNADNHTVDLTDATPLPEIFLQIPD------VAKKGSYVA-------VKGVC 681

Query: 816  VIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 875
            ++A+NP LHPGDIR++ A+D P LHHL +C+V PQ GDR   N  SG DLDGD + V WD
Sbjct: 682  LLARNPSLHPGDIRVVRAIDVPALHHLKNCVVLPQTGDRDLANMCSGGDLDGDDFLVIWD 741

Query: 876  ENLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHAD 933
            + LIPP    W   PM+Y A E      P+    I  FF  +M + N+G I  AH   AD
Sbjct: 742  KQLIPP---EWYHSPMDYQAPEPVKAELPITVDAITSFFVTYMKHNNVGIIACAHRYTAD 798

Query: 934  HS-EYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKI 992
                 G  D  C+ LA+L + AVD+ KTG    MP  L+ + YP +  +    SY S ++
Sbjct: 799  DGFSEGVKDFKCLQLAQLHSMAVDYMKTGVPAVMPNELRVRKYPHWAERPGKSSYHSRRV 858

Query: 993  LGRLYRQSKDAYDEDISVSSEVDINPV-DIHYDTDLEVPESVD--FIADAWNQKCSYDGQ 1049
            LG+LY    DA          +D+ P  D+ +D  +     +D   +  A   K  YD  
Sbjct: 859  LGQLY----DAV-------QRIDLQPAWDLPFDERILSAYQLDAVLLQAASEVKVRYDEA 907

Query: 1050 LNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQV-FEKMDS 1108
            +  ++ QY V  E E+ T  + S  +       +  E+L  + + L++ +++  +EK  +
Sbjct: 908  VQRIMAQYGVENEFEIWTTFVRSHNQ--DENDYKFTEKLGETVTTLKQYYQETCYEKAGT 965

Query: 1109 DCE 1111
              +
Sbjct: 966  SAQ 968


>gi|346325393|gb|EGX94990.1| RNA-directed RNA polymerase (Sad-1) [Cordyceps militaris CM01]
          Length = 1102

 Score =  367 bits (943), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 274/801 (34%), Positives = 393/801 (49%), Gaps = 90/801 (11%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            V ++ ITPT      P VE SNRV+RKY +L DRFLRV F+ E                I
Sbjct: 214  VLKVNITPTCLKLNLPNVESSNRVMRKYNNLHDRFLRVQFLSETESDR-----------I 262

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
             +D   N       V+KR+   L  G  +  R + FLAF +SQLR+ S  FF      S 
Sbjct: 263  AKDRYNND-----DVWKRLLRALHKGIRIGDRTYEFLAFGNSQLREGSVTFFCPTAYLSC 317

Query: 533  LDIKKWMGRFTD-KNIAKCAARMGQCFSSTYAT--VEVPPTEVDPELPDIKRNGYVFSDG 589
             DI+KW+G F   +NIAK  AR+GQCFS+T     + VP   +   + DI+  G  FSDG
Sbjct: 318  DDIRKWLGNFDHIRNIAKFGARIGQCFSTTREVRGIRVPTVRL---IDDIETEGECFSDG 374

Query: 590  IGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAK-GDGIRMSLRESMNKF 648
            +G I+  L   V  ++KLDV   P A+Q R  G KGV+A WP +    + + +R+S  KF
Sbjct: 375  VGIISGLLGKLVVDEMKLDVVGEPSAFQFRMGGAKGVLAVWPREYAKHMEVCVRKSQIKF 434

Query: 649  QSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAF 708
             +   TLEI    +     LNRQ I +L  L V    F  + ++ + +  + + D   A 
Sbjct: 435  TTEANTLEIVKCAKTTTATLNRQTIIILEHLGVSCGAFLELLNAHIKQYEEAMTDRTAAI 494

Query: 709  EVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRW 766
            ++LT    E   T  I  +L A F    +P ++ +L   R+  L  ++EK RI V    +
Sbjct: 495  DLLTKFVDENQTTVIIAELLKADFQ---DPFVKNLLKLWRSWSLKLMKEKCRIHVEKSAF 551

Query: 767  LMGCLDELGVLEGG----------------QCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
            +MGC+DE G L+G                 Q F+Q+S     N             K  +
Sbjct: 552  VMGCVDETGTLQGHSKKTEGSNTKRMDDLPQIFLQISNRKYRN-------------KTTI 598

Query: 811  IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
            IKG  +I +NP LH GDIR+++AVD   L HL D +VFP KGDR   +  SG DLDGD Y
Sbjct: 599  IKGLCLIGRNPSLHAGDIRVVQAVDMQCLRHLKDVVVFPSKGDRSLPSMLSGGDLDGDDY 658

Query: 871  FVTWDENLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAH 928
            FV W+  L+P   K W  PPM       + L R V+  D+  F  K+M N+ LG I  +H
Sbjct: 659  FVIWEPTLMP---KVWNTPPMHSEPVNPQNLDRDVEVNDLRNFVVKYMKNDFLGLIAYSH 715

Query: 929  VVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT-MPAHLKPKLYPDFMGKEAYQSY 987
            + HAD    G     C+ LAEL + AVD+PKTG       A  +PK +P FM  ++ ++Y
Sbjct: 716  LAHADKK--GVNSPMCLQLAELHSQAVDYPKTGIPAEWTRAKYQPKEWPHFMQPKS-RTY 772

Query: 988  KSNKILGRLY-RQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSY 1046
             S + LG+LY R + + +D   S   E D       + TD       D +A A + K  Y
Sbjct: 773  HSRRALGKLYDRVAHENFDYVPSCEDEFDSRVSQGIHLTD-------DILAIARDIKTEY 825

Query: 1047 DGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKM 1106
            D     LL+Q+++  E EL +G  W+M K       + +E L   + AL++ FR +    
Sbjct: 826  DQAARRLLKQFRLATEFELYSG--WAMSKPAVGSDYKRQEDLGQQFGALKQRFRDM---- 879

Query: 1107 DSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQD----SARSVVLLSFAWI 1162
               C   + +      E   +A Y+VT   + VK  L   E      S++ + L+ F WI
Sbjct: 880  ---CIQAAGEAGGGQLEVLVAAMYKVTQ--DEVKCFLAAAEGGDLTCSSKPMPLIGFPWI 934

Query: 1163 ANDYLARIKIRCREMANIDTS 1183
             +  L +I +  R+   ++TS
Sbjct: 935  FHWVLVKIAM-GRDYKPLETS 954


>gi|396468594|ref|XP_003838211.1| hypothetical protein LEMA_P117350.1 [Leptosphaeria maculans JN3]
 gi|312214778|emb|CBX94732.1| hypothetical protein LEMA_P117350.1 [Leptosphaeria maculans JN3]
          Length = 1004

 Score =  367 bits (941), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 244/709 (34%), Positives = 371/709 (52%), Gaps = 55/709 (7%)

Query: 414  RRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIV 473
            R +VITPT  Y   P +E SNR+ RKY   ADRF+RV F DE     N  VL        
Sbjct: 47   RSVVITPTMMYVASPLMETSNRITRKYAADADRFIRVKFSDEK----NEGVL-------- 94

Query: 474  RDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVL 533
            R++  N   +   VF RV   ++ G  + GR + FLAF +SQ R+  A+F++     S  
Sbjct: 95   RNMPGN---RAEAVFSRVHHAMTQGVVVAGRYYEFLAFGNSQFREHGAYFYAPTSSKSAD 151

Query: 534  DIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGK 592
            DI+  +G+F   K +AK  AR+GQCFS+T    ++  + +  E+ D++RNG+ F+DG+GK
Sbjct: 152  DIRISLGKFDHIKTVAKFGARIGQCFSTTR---KMRNSVILQEIDDVERNGHTFTDGVGK 208

Query: 593  ITPDLAMEVAQKLKLDVNP---PPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQ 649
            ++  +A   A++L L  NP   PP  +Q R  G KGV+A  P+      + +R S +KF 
Sbjct: 209  LSLFIAQMAAKELGLP-NPFDDPPTLFQFRLGGYKGVLALDPSIQKS-EVHVRPSQHKFV 266

Query: 650  SHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFE 709
            + ++ LEI   +     F NRQII +LS L V D +F   Q +M++     + D  +A +
Sbjct: 267  AEYSGLEIIRSSALATPFFNRQIIMVLSNLGVSDHVFIRKQQNMVNDYENAMSDEQIAVQ 326

Query: 710  VLTAAC--AEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWL 767
             L       +   T A M+  GF    EP +  +L   R+  +  L+EKARI V  G ++
Sbjct: 327  KLRKHIDMNQTTLTMAGMVLDGFMKSQEPFVMSLLMLWRSHTIKNLKEKARIAVEDGAFV 386

Query: 768  MGCLDELGVLEGG----QCFIQVSEPFLGNCFSKHGSRFAETKK---LQVIKGFVVIAKN 820
            +GC+DE  +L+G     Q  +  +         +   +  +T K    ++I+G  V+A+N
Sbjct: 387  LGCVDESALLKGHMDDPQSRLDATRDEKLATLPEIFMQVDDTTKPGHYKIIEGLCVLARN 446

Query: 821  PCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP 880
            P LHPGD+R++ AVD P L HL + +V PQ G+R   +  SG DLDGD Y V WD +L+ 
Sbjct: 447  PSLHPGDLRVVRAVDIPALRHLRNVVVLPQTGERDLASMCSGGDLDGDDYMVLWDSHLL- 505

Query: 881  PSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGAL 940
            P   + PPM++   +     +P+   DI +FF  +M N++LG I +AH+  AD S  G  
Sbjct: 506  PKIINVPPMDFTPEKPIETEKPITSEDISDFFVTYMKNDSLGQIAHAHLAQADISADGIN 565

Query: 941  DENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQS---YKSNKILGRLY 997
            D  C+ LA+L + AVD+PK+G    M   L+PK YP FM K+   S   Y+S KILG LY
Sbjct: 566  DPVCLELAKLHSQAVDYPKSGIPAMMDRELRPKKYPHFMEKKHLPSNKIYRSRKILGMLY 625

Query: 998  RQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVD----FIADAWNQKCSYDGQLNGL 1053
             Q +            VD  P       D  V E+ D     +  A   K +YD  L  L
Sbjct: 626  DQVQ-----------LVDFQP-QWENRFDKRVLEAYDLDGSLLQRAEGIKVAYDEALRRL 673

Query: 1054 LEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQV 1102
            + ++ +  E E  +  ++ +   +  +  +  E    + SAL+ ++R+V
Sbjct: 674  MAKHGIQTEFEAWS--VFVLAHNHESRDYKFAEEFGRTVSALKAQYREV 720


>gi|17227102|gb|AAL38011.1|AF443073_1 putative RNA-dependent RNA polymerase [Phomopsis sp. CMW 5588]
          Length = 1122

 Score =  365 bits (938), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 282/949 (29%), Positives = 458/949 (48%), Gaps = 81/949 (8%)

Query: 265  GRCNSYRISI-SSRHRGKLSKVITYLGERRVQVDSLSRPITIREEP-------DFEVPMS 316
            GR  +Y   I SS    +   V TYL +  V+   ++R   +   P       D    M+
Sbjct: 21   GRWTTYYFDINSSFSLSEWESVRTYLADYNVKTVQVNRFELVTPGPSNAWRLLDNSAEMT 80

Query: 317  DPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSY 376
                       + F++ + +   +  G+++++ ++  F D L     +     L+ +   
Sbjct: 81   LELLSSTNTYHLDFQVRYQLEVCISHGLLDEYSVNAQFLDKLNSFDADRARMMLEGVAEA 140

Query: 377  KWPVFDACKRLKLVQEWLLKDPEL---YKGPKQIDDIVEVRRLVITPTKAYCLPPEVELS 433
               + +  K        +  DP++   +   +       VRR VITPT  Y   P VEL+
Sbjct: 141  SIQLHEPMK--------IFDDPKVLHYWPNARVPPYATLVRRAVITPTTIYFKTPCVELT 192

Query: 434  NRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRS 493
            NR+LRKY DL DRFLRV F DE                  +  +    ++   ++ RV  
Sbjct: 193  NRILRKYSDLNDRFLRVQFTDE--------------ITFGKIFSSQDSNKDDNLYIRVHR 238

Query: 494  ILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAA 552
            ++  G  +  R + FLAFS+SQ R+  A+FF E    +   I++WMG F   +++ K AA
Sbjct: 239  VMQNGISIGDRHYRFLAFSNSQFRENGAFFFCETDHVTCDSIREWMGDFRHIRSVGKFAA 298

Query: 553  RMGQCFSSTYAT--VEVPPTEVDPELPDIKR----NGYVFSDGIGKITPDLAMEVAQKLK 606
            RMGQCF++T     + +P      ++ DI+R    + + F+DG+GKI+   A  +A +  
Sbjct: 299  RMGQCFTTTRQVNGISIPNIR---KIDDIERQTGDHTWNFTDGVGKISNFFAKLIASER- 354

Query: 607  LDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPG 666
             D+   P  +Q+R  G KGV+  WP       + +R S  KF++ +  LEI     F   
Sbjct: 355  -DLPETPSCFQMRIGGGKGVLVVWPDVPPS-EVHVRPSQEKFKAVYNVLEIIKTFAFSHA 412

Query: 667  FLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIM- 725
              N+Q+I +L  L V + +F SM D  L + ++ L DS  A E+L +   E   T  +  
Sbjct: 413  TFNKQVIPVLVALGVDNSVFVSMLDDELREYDEALADSMKAGELLRSQVDENQTTLTMAE 472

Query: 726  LSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG------ 779
            +   F    EP L  +L   +   L  L+ K  I V     + G +DE+GVL G      
Sbjct: 473  MVDTFMDSKEPFLWTLLRLWKCWILKRLKHKFAISVKKSAMVFGVVDEIGVLRGHSQATE 532

Query: 780  GQCFIQV-SEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE 838
            G+ +  + S P +       GS    T   +VI G  V+ +NP LHPGD+R++EAVD PE
Sbjct: 533  GRGYNSIESLPQIFLQVPIEGSDGRSTTNYEVITGICVVGRNPSLHPGDVRVVEAVDVPE 592

Query: 839  LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKT 898
            L HL + +VFP+ GDR   +  SG D+DGD YFV WDE LI P++   PP+ ++A  + T
Sbjct: 593  LRHLKNVVVFPKTGDRDIPSMCSGGDMDGDDYFVYWDERLI-PTEWDHPPLNHDAG-SST 650

Query: 899  LTRPVDQ--RDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVD 956
            L +P D    D+  FFA++M N++LG I  AH   AD    G  +  CI LA+L + AVD
Sbjct: 651  LDKPADVTIEDVTRFFAQYMKNDSLGRIATAHFAQADQLSGGVKNPKCIELAKLHSMAVD 710

Query: 957  FPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDI 1016
            + K+G+   M  HL+P+ +P +M KE   +Y+S   LG++Y + K    E+   + E+  
Sbjct: 711  YIKSGRPAVMKRHLQPRKWPHWMEKEKKSNYRSYSALGKIYDRIK---IEEFHAAYEM-- 765

Query: 1017 NPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREE-ELVTGHIWSMPK 1075
             P D    +  ++    D +A A   K +YD  +  L+ Q++    E E+ +  I S P+
Sbjct: 766  -PFDARILSRYQL--EADTLAKASKIKATYDIAMRRLMGQHEAPVTEFEIWSTFILSRPR 822

Query: 1076 YNSRKQGELKERLKHSYSALRKEFR-QVFEKMDSDCELLSEDEKNAL-----FERKASAW 1129
              S  +  L+E +    +AL+  FR +  E +  + +       +++      +R  +A 
Sbjct: 823  VGSDYK--LQENVGRELAALKLRFRAECMEAVTGNIQTEGFAPASSVVNLEKLDRFVAAM 880

Query: 1130 YQVTYH---PEWVKKSLDLQEQDSARSVV---LLSFAWIANDYLARIKI 1172
            Y VT++       ++S+     +     +   L+SF W+ +  LAR+ +
Sbjct: 881  YTVTHNDVRAALRERSMPKPNGEGGSEEIQMPLISFPWLFHRELARVAL 929


>gi|391341002|ref|XP_003744822.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
            [Metaseiulus occidentalis]
          Length = 1356

 Score =  365 bits (936), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 256/767 (33%), Positives = 396/767 (51%), Gaps = 92/767 (11%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANV-------- 464
            + ++ +TP++    PPE    NR+LR+     D  LRV F D+ L+ +  N+        
Sbjct: 403  IYKVFLTPSRTILRPPEEHGENRILRQVS--RDYMLRVAFRDDNLEKLTHNLTREEGRNF 460

Query: 465  LSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF 524
            L YF+   +RD                      G  +  R + +LA SSSQLRD   W++
Sbjct: 461  LEYFLKGFLRD----------------------GIEIENRTYEYLAASSSQLRDHGCWYY 498

Query: 525  SED--GKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKR 581
            ++D  G+ S   I++ MG F D KN+ K  AR G CFSST  TV+V   E   E  DI  
Sbjct: 499  AKDEHGRDSK-SIREEMGSFDDIKNVGKKMAREGLCFSSTIETVKVSEDECTIE-EDITG 556

Query: 582  NG-------YVFSDGIGKITPDLAMEVAQKLKLDV-NPPPCAYQIRYAGCKGVVACWPAK 633
                     Y FSDGIGKI+ +L  +V + LK  + +  P A+QIR+ G KG+VA  P  
Sbjct: 557  GAHEKSNKPYTFSDGIGKISAELRDDVCEALKDSLRDKKPSAFQIRFRGAKGMVAFDPCL 616

Query: 634  GDGIRMSLRESMNKFQS-HHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDS 692
             +G R+ LR+SM KF S   ++ E+  ++  +   LN+QIIT+L  L VP E+F   Q++
Sbjct: 617  -EGRRLVLRKSMVKFASTSSSSFEVIKYSEDRSLTLNKQIITILEQLGVPAEIFLRYQEA 675

Query: 693  MLSKLNQMLVDSDVAFEVLTAACAEQGNTA---AIMLSAGFNPQTEPHLRGMLTCIRAAQ 749
             +      L+  + A E LTA+  +  +     +     G +   +P+ R ML  +    
Sbjct: 676  NIIDFADALLFENQAHERLTASIKKDPDCVIDFSKFREFGMSVVRDPYFRAMLIELYRYI 735

Query: 750  LWGLREKARIFVP--AGRWLMGCLDELGVLEGGQCFIQ------VSEPFLGNCFSKHGSR 801
            +  LR+KARI +P   GR L+G +DE G LE GQ +++       S P +    +     
Sbjct: 736  ITNLRDKARISIPWGLGRNLLGVIDETGKLEYGQVYVRYTPREDTSGPDIKVDNNTDEDG 795

Query: 802  FAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEAS 861
                   +V+KG V++ K PC+HPGD+R+LEAVD PEL HL D +VFPQKG RPH NE +
Sbjct: 796  VPRQAGTEVVKGRVLVTKCPCVHPGDVRMLEAVDIPELAHLVDVIVFPQKGPRPHPNEMA 855

Query: 862  GSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENL 921
            GSDLDGD Y V WD+N    +  +  PM ++ A A+  +  ++  D   F  + ++N+N 
Sbjct: 856  GSDLDGDEYAVIWDQNFF-FADGNHRPMIFDDAPAEP-SESLELEDYYNFICQFILNDNK 913

Query: 922  GTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGK 981
            GTI NAH+ HAD  E G   + C+ LAE  +  +DF KTG++  +      K+YPDFM K
Sbjct: 914  GTISNAHLAHADREEDGIFSDKCLRLAEKVSMTLDFAKTGRLTQLEPSEVVKVYPDFMQK 973

Query: 982  EAYQ-SYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAW 1040
            + ++ +Y+S K+LG+LYR S+      + ++ +   +  +  Y  +       +F  + W
Sbjct: 974  QDHKATYRSEKVLGKLYRASR-----ALEITVKQGSSGCEERYVNE-------NFELEGW 1021

Query: 1041 NQKCS--------YDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRK---QGELKERLK 1089
             +K          Y+ +L  ++ +  +  E E++   +  + KY S+      EL+E+L+
Sbjct: 1022 EEKKQDALIFVEKYEHRLTNIMGRMGIQSEAEIMVSIVTQVSKYMSKSFHDLEELQEQLE 1081

Query: 1090 HSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHP 1136
                 L  + ++ FE+M        +D+K  L    ASA Y + Y P
Sbjct: 1082 RQRFFLNLKMKEDFERMTRG----DKDQKMLL----ASAIYMLVYDP 1120


>gi|452987327|gb|EME87083.1| hypothetical protein MYCFIDRAFT_202751 [Pseudocercospora fijiensis
            CIRAD86]
          Length = 1276

 Score =  365 bits (936), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 259/785 (32%), Positives = 381/785 (48%), Gaps = 80/785 (10%)

Query: 321  CIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPV 380
             +HY   + F++ + +   +  G++ +  +   F   L        V  L+ +   K  V
Sbjct: 231  SLHY---LPFKLRYQLEVCLSLGLLLECNIDRDFLKRLAEMDLTRAVKVLEKVADNKERV 287

Query: 381  FDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKY 440
            ++     +L  +  +         K+ D   E+  +V+TP+  Y      E SNRV+R++
Sbjct: 288  YEPMTIFRLQNQVSVV------TKKKPDYCTEIGSVVVTPSTIYAATMVRETSNRVIRQF 341

Query: 441  KDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFY 500
            KD  DRFLRV F DE  +                 I  +  ++   VF R++  ++ G  
Sbjct: 342  KDYEDRFLRVKFTDERYKG---------------KIWSSDDNRMNEVFSRIKRTMTHGIQ 386

Query: 501  LCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFS 559
            +  R + FLAF +SQ R+  A+FF+   K +   I++WMGRF+  + IAK  +R+GQCFS
Sbjct: 387  IGDRHYEFLAFGNSQFREHGAYFFAPTEKLTAEMIREWMGRFSHIRVIAKYVSRLGQCFS 446

Query: 560  STYATVEVPPTEVD-PELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPP------ 612
            +T A     P +VD     DI+RNGY F+DG G ++P LA  +A    L  N P      
Sbjct: 447  TTRAI----PHKVDLGRSVDIERNGYCFTDGAGTMSPFLARMIA----LHHNVPNSEENF 498

Query: 613  PCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQI 672
            P A Q R AGCKGV+A  PA   G  + +R S  KF + +  LEIC  ++F    LN QI
Sbjct: 499  PSAVQFRLAGCKGVLAVDPAL-KGFAIQIRPSQEKFPAEYHGLEICRISQFSTANLNMQI 557

Query: 673  ITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTA--AIMLSAGF 730
            I +LS L + DE+F     +ML  + + + D   A E+L         T   A M+  GF
Sbjct: 558  ILVLSALGIDDEVFLGKMRAMLVDIKEAMSDERKALELLQKNIDYSQTTILLATMIFDGF 617

Query: 731  NPQTEPHLRGMLTCIRAAQLWG---LREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVS 787
                +P    M+TC+R  + W    L+EKARI+V  G + +   DE G L G       +
Sbjct: 618  METKDPF---MITCLRLWRSWCLKYLKEKARIYVEQGFFGLAVPDETGTLRGHYDKPVSA 674

Query: 788  EPFLGNCFSKHGSRFAETK-------------------KLQVIKGFVVIAKNPCLHPGDI 828
            +    +   +H +   E                     K +VI    ++A+NP LHPGD+
Sbjct: 675  DSDNADTSDEHDAGSDEIASDEDLPEIFLQVPDPDAPGKYRVILSICILARNPSLHPGDV 734

Query: 829  RILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPP 888
            R + AVD PELHHL D +V P  GDR   N  SG DLDGD + V WD N I P   S PP
Sbjct: 735  RKVRAVDKPELHHLRDVVVIPTTGDRDLANMCSGGDLDGDDFMVIWDPNFI-PHGASHPP 793

Query: 889  MEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLA 948
            M+Y + +  T   PV   D+  FF KH+ N+NL +I  AH   AD    G  D  CI LA
Sbjct: 794  MDYTSPDPVTSDGPVSVDDMTTFFVKHIKNDNLSSIAVAHRYWADQLADGVKDAKCIELA 853

Query: 949  ELAATAVDFPKTGKIVTMPAHLKPKLYPDF---MGKEAYQSYKSNKILGRLYRQSKDAYD 1005
            +L + AVD+PKTG    M   LK + +P +     K   + Y SN++LG+LY + K    
Sbjct: 854  QLHSKAVDYPKTGVPAVMTPGLKVQKWPHWSEPKNKSKSKIYHSNRVLGKLYDEVK---K 910

Query: 1006 EDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEEL 1065
            E    + ++   P D    T  E  + +  +ADA   K  YD  +  ++ Q+ +  E E+
Sbjct: 911  EPFHAAWDL---PFDQRILTACEPSDRM--LADAREVKAEYDEAIQRIMTQHGIKTEFEI 965

Query: 1066 VTGHI 1070
             T  +
Sbjct: 966  WTTFV 970


>gi|260801475|ref|XP_002595621.1| hypothetical protein BRAFLDRAFT_64731 [Branchiostoma floridae]
 gi|229280868|gb|EEN51633.1| hypothetical protein BRAFLDRAFT_64731 [Branchiostoma floridae]
          Length = 1492

 Score =  364 bits (934), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 235/632 (37%), Positives = 333/632 (52%), Gaps = 44/632 (6%)

Query: 552  ARMGQCFSSTYATVEVPPTEVDPELPDIKRN------GYVFSDGIGKITPDLAMEVAQKL 605
            ARMGQCFS+T ++V V P +V   + DI+         Y FSDGIGKI+ DLA EV +K 
Sbjct: 596  ARMGQCFSTTESSVTVRPGQVS-RIADIEGGRDPDGKSYCFSDGIGKISRDLAKEVCEKT 654

Query: 606  KLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQP 665
            +   +  P A+Q+RYAG KG++A  P    G+ M  R+SM KF S H  +EICS +    
Sbjct: 655  QR--SHEPSAFQVRYAGVKGMLAVDPTL-TGLAMQYRKSMEKFSSEHNNIEICSESHPAR 711

Query: 666  GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIM 725
             +LNRQII++LS L +PDE+F  +Q+  L KL  M +  + A + L       G     +
Sbjct: 712  FYLNRQIISILSGLGIPDEVFQVLQEDQLRKLASMFLLENRAVDALNQRAQLSGVPYQKL 771

Query: 726  LSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCF 783
             + G     EP  +GML  +  + +   R KARI +P   GR ++G LDE G LE GQ F
Sbjct: 772  SNCGVYMTREPFFKGMLRRVYKSGIGDTRRKARIEIPPEYGRNMLGVLDETGTLEYGQVF 831

Query: 784  IQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLY 843
            +Q +E            +  ETK   V+ G VV+++NPC HPGD+R L AVD P LHH+ 
Sbjct: 832  VQYTEDIT--------DKGGETK---VLTGDVVVSRNPCFHPGDVRKLRAVDVPALHHMV 880

Query: 844  DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPV 903
            D +VFP KG RPH NE SG DLDGD +FVTW  +L+   + +  PM + A + K     V
Sbjct: 881  DVIVFPSKGPRPHPNEMSGGDLDGDQFFVTWHPDLL-FQRPNADPMHFKAPK-KIELEIV 938

Query: 904  DQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKI 963
               D+  F   ++ ++ LG I NAH+  +D  E G   + C+ LAE  + AVDFPKTG  
Sbjct: 939  TISDLQNFIVDYIKSDILGVIANAHLAFSDKEEDGVFSQVCLNLAEKHSDAVDFPKTGVP 998

Query: 964  VTMPAHLKPKLYPDFMGKEAYQSY-KSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIH 1022
            V +    +PK YPDFM K   ++  +S K +G +YR+ +    E+I  + E       I 
Sbjct: 999  VGLSDDERPKAYPDFMDKSHKKTVRRSEKAMGEMYRECQAI--ENICSAPEKTDEAETIE 1056

Query: 1023 YDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKY--NSRK 1080
             D  L +P    +   A   +  Y+ QL  L+++Y +  E E ++G I  + K+  N   
Sbjct: 1057 PDPYLILPTHQRYKRQAEQSRGRYNDQLKYLMDRYGIETEAEAMSGCIGRIHKHMDNRYD 1116

Query: 1081 QGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVK 1140
            + E++   K     LR+  R+ F       + + + +     + KASAWY VTY      
Sbjct: 1117 RHEVERVFKERIKDLRRRTREEFFVEFGGEKNVKKSDYPPEVQAKASAWYVVTY------ 1170

Query: 1141 KSLDLQEQDSARSVVLLSFAWIANDYLARIKI 1172
                      A    LLSF WI  D LA IK+
Sbjct: 1171 --------SDANENRLLSFPWIVGDILAVIKV 1194



 Score =  149 bits (376), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 132/450 (29%), Positives = 206/450 (45%), Gaps = 62/450 (13%)

Query: 193 CEFKVEFL-VREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDP 251
           C F+V +  + +  LV Q  + +C+   L+    P   Y    +++LV+ P      ++ 
Sbjct: 179 CRFEVGYKELEKTVLVHQDGDVTCLFFFLKY---PLKVYEV--EEVLVIFPRLSDSPEEK 233

Query: 252 WIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERR------VQVDSLSRPITI 305
             R   F         NS  + +    R     V++ L  R       V V SL  P T 
Sbjct: 234 VTRKISFHGCSKSTLGNSSCLKLVLPARQNPQDVLSRLCGRGSFTAHYVSVTSLPAPETA 293

Query: 306 REEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLR--GQSR 363
            +E D                G++F+  +   A++ +G     Q++D+F   +R   + R
Sbjct: 294 GKEADMLT-------------GVAFKTSYAFRALLSRGFTAMDQVTDAFIRQVRRLDRDR 340

Query: 364 EVNVAA-----LKHIYSYKWPVFDACKRLKLVQEWLL--KDPELYKGPKQIDDIVEVRRL 416
             +VAA     L H+        D    ++ V + LL  +D EL +       +  V R+
Sbjct: 341 GEDVAADILYRLTHVLER-----DRFANIQAVLDCLLAARDVELGRPETLPATLQVVARV 395

Query: 417 VITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDI 476
           ++TPT+   L PE+   NRVLR++    D FLRV F DE    + A              
Sbjct: 396 IVTPTRLVFLQPEIMYGNRVLREFG--TDHFLRVVFRDEDFSKLQAT-----------GT 442

Query: 477 TLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIK 536
              +  ++ ++F RVR +L  G  +  R + FLA S+SQLR+   WFF+ DG+     I+
Sbjct: 443 GRGNGDEEEKIFVRVRKVLKKGIKVGNRLYEFLAASNSQLREHGLWFFASDGRNRADSIR 502

Query: 537 KWMGRFTDKNI-AKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRN------GYVFSDG 589
            WMG F++    A   ARMGQCFS+T ++V V P +V   + DI+         Y FSDG
Sbjct: 503 DWMGDFSNSRCPATYLARMGQCFSTTESSVTVRPGQVS-RIADIEGGRDPDGKSYCFSDG 561

Query: 590 IGKITPDLAMEVAQKLKLDVNPPPCAYQIR 619
           IGKI+ DLA EV +K +   +  P A+Q+R
Sbjct: 562 IGKISRDLAKEVCEKTQR--SHEPSAFQVR 589


>gi|452837097|gb|EME39040.1| hypothetical protein DOTSEDRAFT_110589, partial [Dothistroma
            septosporum NZE10]
          Length = 1155

 Score =  363 bits (933), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 304/997 (30%), Positives = 469/997 (47%), Gaps = 115/997 (11%)

Query: 178  IAFALKSSTEHAVIKCEFKVEFLVREINLVKQ-YSEFSCV-AILLQLASSPRVWYRTADD 235
            I   ++S TEH  I+  FK+     ++   +  Y+E      I+L + S P V+ RT   
Sbjct: 144  IQVVMQSPTEH-TIEHVFKLRINPAQVREAQTGYTENDDYNTIVLSIDSPPLVFRRTTKI 202

Query: 236  DILVLVPFDMLDDDDPWIRTTD--FTPSGA--------------IGRCNSYRISISSR-- 277
                       ++D  W R TD  F P G               IGR  +Y+++  SR  
Sbjct: 203  YETHDSKAAYWNEDSAWFRQTDIDFDPLGRKSCIELAKPDAFIDIGRWLTYQLTFESRLW 262

Query: 278  HRGKLSKVITYLGERRVQVDSLSRPITIR-EEPDF----------EVPMSDPFF--CIHY 324
               +L  ++  L E  + +D  S+ +++  E+ DF              S  F       
Sbjct: 263  RTTQLQNIVQALAEHNIALDQ-SKSVSVEVEDADFLWDWGGNSKHNTSESTSFLDELQEM 321

Query: 325  EEGI---SFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVF 381
             EG+    F + + +   +  G++++  +S  F   L     E  V  L+ I   +   +
Sbjct: 322  AEGVVQLPFALRYQLEVCLSIGVLHEVNMSQDFLKRLAAMEPERAVKVLEKIADGRQRYY 381

Query: 382  DACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYK 441
            D  + L+L  +  + +    K P     I  V    +TP+  +   P +E SNRV+R+Y+
Sbjct: 382  DPYEILRLQSQVSVVEK---KRPAYCTKIPAV---TVTPSTLHFATPVLETSNRVVRQYQ 435

Query: 442  DLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYL 501
               DRFLRV F DE  +                 I       ++ VF R+   ++ G  +
Sbjct: 436  QYQDRFLRVKFRDELHKG---------------KIFPQDDHSESEVFSRISRAMTHGVKI 480

Query: 502  CGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSS 560
              R + FLAF SSQ R+  A+FF+     +  DI+KWMG FT  K +AK  AR+GQCFS+
Sbjct: 481  GDRIYEFLAFGSSQFREHGAYFFASTAALTAADIRKWMGNFTHIKVVAKYCARLGQCFST 540

Query: 561  TYATVEVPPTEVDPE-LPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL--DVNPPPCAYQ 617
            T +     P  V+ E + DI+RNG+ F+DG GKI+P LA  +A    L    +  P A+Q
Sbjct: 541  TRSI----PHAVNIETISDIERNGHCFTDGSGKISPFLARLIAHHYGLPNSDDDHPSAFQ 596

Query: 618  IRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLS 677
             R AGCKGV++  PA   G+ + +R S  KF +    LEIC  +++   +LN QII +LS
Sbjct: 597  FRLAGCKGVLSVDPAL-RGLTIQIRPSQQKFAAEAFGLEICRISQYSAAYLNMQIILVLS 655

Query: 678  TLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAAC--AEQGNTAAIMLSAGFNPQTE 735
             L VPDE+F +   +ML   ++ +   D A  +L       +   T A M+  GF    +
Sbjct: 656  ALGVPDEVFIARVRTMLKDFDEAMKSEDKALILLQKNIDYNQMTLTLASMIMDGFMETKD 715

Query: 736  PHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG---------------- 779
            P     L   RA  L  L+EKAR+ V  G + +   DE G+L G                
Sbjct: 716  PFTTTCLRLWRAWSLKYLKEKARVLVEEGFFGIASPDETGILRGYSDDSPSVDEVQKDGD 775

Query: 780  -GQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE 838
              + F+Q+ +P                 K  V+ G   +A+NP LHPGD+R++ AVD PE
Sbjct: 776  LPEIFLQIPDP-------------DTPGKYIVLLGVCALARNPSLHPGDVRVVRAVDVPE 822

Query: 839  LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKT 898
            LHH  + ++ P  GDRP  N  SG DLDGD + V WD++LIPP +++  PM+Y +    T
Sbjct: 823  LHHKKNEVILPITGDRPLANMCSGGDLDGDDFMVIWDKDLIPP-ERNHEPMDYTSPTPAT 881

Query: 899  LTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFP 958
                V   D+  FF  ++ N+NL  I  AH   AD  + G  D  C+ LA L + AVD+ 
Sbjct: 882  SEGVVTVADMSRFFVNYIKNDNLARIATAHRYWADWQDDGVKDPKCLALANLHSMAVDYV 941

Query: 959  KTGKIVTMPAHLKPKLYPDF---MGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVD 1015
            KTG    MPA LK K++P +    GK   + Y S K+LG+LY + K       SV +  D
Sbjct: 942  KTGVPAYMPADLKVKMWPHWSEPKGKSKRKVYTSKKVLGQLYDEVKRE-----SVVAAWD 996

Query: 1016 INPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPK 1075
            + P D    +  +  ES+  + DA   K  YD  +   + Q+ +  E E+ T  +  +  
Sbjct: 997  M-PFDDRILSACDPTESM--LDDAREIKALYDEAVRRAMAQHGIKTEFEVFTTFV--LEH 1051

Query: 1076 YNSRKQGELKERLKHSYSALRKEFRQV-FEKMDSDCE 1111
            +      +  E +    S LR++ +++ +E+  +D +
Sbjct: 1052 HQDINDYKFAETMGEVASNLRQQHQELCYERAGTDSK 1088


>gi|391331492|ref|XP_003740179.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Metaseiulus
            occidentalis]
          Length = 1286

 Score =  362 bits (930), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 258/757 (34%), Positives = 389/757 (51%), Gaps = 82/757 (10%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSY--- 467
            V VRR+ +TPT+      ++   NR+LR +   ++  +RV F D+ L  +  +VL+    
Sbjct: 328  VYVRRVFVTPTRMILRFADLHTQNRILRHFD--SEYAIRVCFRDDNLDKLTFSVLNMREK 385

Query: 468  --FIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS 525
              F+  +V D               +RS    G  +  RK+ ++A SSSQLRD   WF++
Sbjct: 386  LPFLNHVVGD--------------HIRS----GITIGDRKYMYVAASSSQLRDHGVWFYA 427

Query: 526  ED-GKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTE--------VDPE 575
             D        I++WMG F++  N+A   ARMGQCFSST  TVEV P E           +
Sbjct: 428  LDPSGFDAASIRQWMGDFSNISNVATRMARMGQCFSSTQETVEVTPLEEVHEDDIWYPEQ 487

Query: 576  LPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGD 635
            +    +  Y FSDG GKI+P L  EV   L   ++ P  A QIRY GCKG+V C     +
Sbjct: 488  VHPTSKKPYCFSDGCGKISPSLLSEVWGSLPHTISQPS-ALQIRYRGCKGMV-CLDPSLE 545

Query: 636  GIRMSLRESMNKFQSH-HTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSML 694
            G ++ LR+SM KF+ + +  LE+  W+     FLNR  I +L    V  ++F  ++  M+
Sbjct: 546  GRQLVLRKSMVKFECNSNRKLEVIKWSAPMNMFLNRPFIAILEHHGVKIDVFLRLELEMI 605

Query: 695  SKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLR 754
             ++   LV    A  VLT+          +    G+    +P    ML  +    L  L+
Sbjct: 606  LQIADSLVCEASALRVLTSFVKTPIPFYGLA-ETGWQLVQDPFFTQMLFDLLKTSLMSLK 664

Query: 755  EKARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSE----PFLGNCFSKHGSRFAETKKL 808
            EKA I +P   GR ++G +DE G+LE GQ FIQ +E    PF                + 
Sbjct: 665  EKANIAIPVNEGRNMLGVVDETGLLEYGQVFIQFTEMPSAPFQ-----------ISQART 713

Query: 809  QVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGD 868
            +V+   VV+ K PCLHPGD+R L AVD PELHH+ DC+VFP KG  PH  E SGSDLDGD
Sbjct: 714  RVVDADVVVTKCPCLHPGDVRRLRAVDIPELHHVRDCIVFPAKGKAPHPFEMSGSDLDGD 773

Query: 869  LYFVTWDENLIPPSKKSWPPMEYN---AAEAKTLTRPVDQRDIIEFFAKHMVNENLGTIC 925
             Y   W E+LI   +++  P  Y+       K   RPV +   + F   ++ N+ +G I 
Sbjct: 774  EYICIWKEDLI--FEENVEPYLYDDKPLGVVKPYQRPVHE---VSFLCSYIANDMIGIIS 828

Query: 926  NAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQ 985
            NAH+  AD  + G + + C+ L + A+ A+DF KTG  V +  + KP+ +PDFM K  ++
Sbjct: 829  NAHLAWAD--QRGLISDECLALVDKASKALDFAKTGHSVDLHPNEKPERFPDFMEKGDHK 886

Query: 986  -SYKSNKILGRLYRQSKDAYD-EDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQK 1043
             SY+SNK LG LYR  +      D  +SS    +P        LEVP    F  DA+   
Sbjct: 887  HSYQSNKALGILYRTVRQIMSVNDTQLSSGHKFSP--------LEVPGWQMFRDDAYAAM 938

Query: 1044 CSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRK--QGELKERLKHSYSALRKEFR- 1100
              Y+ +L  +++Q+ +  E E+ +G I ++  +++ +  +  +   +    +AL +E R 
Sbjct: 939  RRYNQRLANIMDQHGIMSEGEVFSGRIGTLNTFDASRAEKASVALLVDRQKTALMEETRE 998

Query: 1101 QVFEKMDSDCELL---SEDEKNALFERKASAWYQVTY 1134
            Q F ++ +DC +L   + +++  L  +KASAW+   Y
Sbjct: 999  QFFAELKNDCIVLGAHAAEDRRMLRLQKASAWFMAAY 1035


>gi|171685025|ref|XP_001907454.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942473|emb|CAP68125.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1493

 Score =  359 bits (921), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 264/800 (33%), Positives = 398/800 (49%), Gaps = 82/800 (10%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            VR++++TPTK     P VE +NRV+R Y    + F+R+ F DE L+              
Sbjct: 529  VRKVMVTPTKIIFSTPTVETTNRVIRHYWTFQNYFMRIQFTDEQLEGR------------ 576

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE------ 526
               +  +   +   ++ RV  +L  G  +    + FLAF +SQ+R+  A+ F +      
Sbjct: 577  ---VRGSDADRDDDLYTRVYRVLFWGIRMGKWHWKFLAFGNSQVRENGAFMFCQPDSHAG 633

Query: 527  DGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATV--EVPPTEVDPELPDIKRNG 583
            D   S  DI++WMG F   K +AK AAR+GQCFS+T        PP  V+ E  +     
Sbjct: 634  DMVPSCDDIRRWMGNFEHIKVVAKYAARLGQCFSTTRVLRGGTFPPI-VEIEDINTADGK 692

Query: 584  YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRE 643
            + F+DG+G+I+P L+  VA+  +  V PPP AYQ R  GCKGV+  W     G  + +R 
Sbjct: 693  HCFTDGVGRISPLLSRLVAEDWQ--VYPPPSAYQFRMGGCKGVLVGW-KHAKGTEVHIRP 749

Query: 644  SMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVD 703
            S  KF + +  LE+   + F    LNRQ IT+LS+L VPD +F  +    LS+ ++ + D
Sbjct: 750  SQEKFSAAYNGLEVVRCSSFSCATLNRQTITILSSLGVPDHVFVDLMREQLSRFDRAMTD 809

Query: 704  SDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761
               A ++LT+   E   T +I  M+ +GF    EP ++ +L   RA  L  L+EKAR+ V
Sbjct: 810  GKSAVDMLTSFVDENMTTVSIARMIKSGFMDSNEPFVKTVLQLWRAWSLKTLKEKARLAV 869

Query: 762  PAGRWLMGCLDELGVLEG------GQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFV 815
              G +++GC+DE G L G      G+  I+  +  L   F +   R  +    + I G  
Sbjct: 870  EKGAFVLGCVDETGTLRGHSKATEGRQRIRRDQ--LPQIFLQIPDR-DDPSGYKAIAGLC 926

Query: 816  VIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 875
            +I +NP LHPGDIR++EAVD P L HL D +VFP +GDR   +  SG DLDGD +FV WD
Sbjct: 927  IIGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPLEGDRDVPSMCSGGDLDGDDFFVIWD 986

Query: 876  ENLIPPSKKSWPPMEYNAAEAKTL-TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADH 934
            E L+ P++ S PPM++      T  ++      +  FF   M N+ L  I +AH+  AD 
Sbjct: 987  EKLL-PTEWSHPPMDHTPQPPVTSDSKKSIMESLASFFVLFMKNDRLPFIAHAHLATADA 1045

Query: 935  SEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILG 994
               GA  E C+ LAE+     ++ K          L P+ +P FM ++   SY S   LG
Sbjct: 1046 EPQGAKSEKCLKLAEMTGVPAEWSK---------KLNPRSWPHFMERQK-GSYHSKTALG 1095

Query: 995  RLYR--QSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNG 1052
            +LY    ++D +D   +  S  D   +   Y  D EV ++   I      K  YD  +  
Sbjct: 1096 QLYDMVHTQD-FDSTKNYQSPFDRRILS-RYMLDQEVLKTARKI------KTQYDIAMRR 1147

Query: 1053 LLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCEL 1112
            +L   ++  E E+ TG +   P+  S  +  ++E++    +ALR++FR    K   D   
Sbjct: 1148 ILGMLEIRTEFEVWTGFVMFKPRVGSDYK--VQEKVGREAAALREQFRAECIKAAGDRHF 1205

Query: 1113 LSEDEKNALFERKASAWYQVT-----------YHPEWVKKSLDLQEQDSARSVVLLSFAW 1161
                EK   F    +A YQVT             P+ +        + +ARS+ L++F W
Sbjct: 1206 ----EKLGPF---VAAMYQVTCEEMRIALYQARQPQVLADGTINARRITARSMPLVTFPW 1258

Query: 1162 IANDYLARIKIRCREMANID 1181
            +  D L RI +  RE   ID
Sbjct: 1259 LFPDELGRI-VNGRENGLID 1277


>gi|238015130|gb|ACR38600.1| unknown [Zea mays]
          Length = 525

 Score =  353 bits (906), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 213/550 (38%), Positives = 302/550 (54%), Gaps = 36/550 (6%)

Query: 645  MNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDS 704
            M KF+S  T L I +W++ QP ++NR+II+LLSTL + DE+F SMQ   + + + ML + 
Sbjct: 1    MKKFESKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNK 60

Query: 705  DVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAG 764
            + A  VL         TAA ML  G+ P +EP+L  +L   RA +L  +R + +I V  G
Sbjct: 61   EAALSVLGKIGGGDTKTAADMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKG 120

Query: 765  RWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLH 824
            R L+GCLDE   LE GQ +I++++      +S+      +  K  VI G V I KNPCLH
Sbjct: 121  RVLIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIVGKVAITKNPCLH 180

Query: 825  PGDIRILEAVDHPEL--HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPS 882
            PGD+R+LEAV  P L    L DC+VFPQ+G+RPH NE SG DLDGDL+F+TWD+ LIP  
Sbjct: 181  PGDVRVLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFITWDDKLIP-- 238

Query: 883  KKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDE 942
            +K   PM+Y A   + +   V   +I + F  +M+N+ LG I  AH++HAD     A   
Sbjct: 239  EKVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAHLIHADRDPLKARSP 298

Query: 943  NCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKD 1002
             C+ LA L + AVDF KTG    MP  L+P+ +PDFM +     Y SN +LG+LYR +  
Sbjct: 299  ECVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYVSNGVLGKLYRAAL- 357

Query: 1003 AYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNRE 1062
             ++ED    + +   P    YD DLEV    +F+  A  +  +Y  +L  L+  Y   RE
Sbjct: 358  RHEED--AEALLPAGPPSCVYDPDLEVAGFDEFLDAAEERYEAYAERLGALMTYYSAERE 415

Query: 1063 EELVTGHIWSMPKY---NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKN 1119
            +E++TG+I +   Y   ++++  E+K+R+  +  AL  E R              ED+ +
Sbjct: 416  DEILTGNIRNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLRA-------CKEDDAS 468

Query: 1120 ALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKI--RCREM 1177
                R ASAWY VTYHP            D        SF WI  D L  IK   RCR+ 
Sbjct: 469  ----RVASAWYHVTYHP------------DRRGEKRFWSFPWIICDTLLAIKAARRCRKR 512

Query: 1178 ANIDTSKPVN 1187
               D + P++
Sbjct: 513  VE-DAAVPMD 521


>gi|325088329|gb|EGC41639.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
          Length = 1522

 Score =  352 bits (902), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 255/786 (32%), Positives = 389/786 (49%), Gaps = 96/786 (12%)

Query: 250  DPWIRTTDFT--PSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSR------ 301
            D WIR TD    P   I    + R   S  + G+ +     L E  V  D   +      
Sbjct: 418  DTWIRQTDIVHYPEKTIRTPVNLRKQNSHINFGRWTTFRLVLHENTVSDDKKFQIFHDAL 477

Query: 302  ---PITIREEPDFEV-----PM--------------SDPFFCIHYEEG-----ISFEIMF 334
                I I+E  DFEV     P+              S P   +   EG     + F + +
Sbjct: 478  RDFNINIQECDDFEVIKGAEPIPTVWKWIDAPSTHKSRPLSSLEDLEGDEYIPLPFTVRY 537

Query: 335  LVNAVMHKGIINQHQLSDSFF----DLLRGQSREV--NVAALKHIYSYKWPVFDACKRLK 388
             +   + +G +N++ L ++F      L   +++E+  +VA  K +Y     +FD      
Sbjct: 538  QLEVCISQGCLNEYILDETFVLQLAQLGEKKAKELLEHVAMNKAVYYSPMEIFD------ 591

Query: 389  LVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFL 448
                  +  P+     +  +    +R   ITP+  +   P V+ SNRV R +++ ADRFL
Sbjct: 592  ------IPFPDGVTHGRIPEHCCYMRSADITPSTIHYDIPSVDTSNRVFRYHREHADRFL 645

Query: 449  RVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSF 508
            RV F DE            ++  I  +   N+    + V+ RV  IL  G  +  R + F
Sbjct: 646  RVRFCDEK-----------YMGRIYSNSNGNNLCM-SEVYARVTRILQHGIIIGDRHYEF 693

Query: 509  LAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEV 567
            LAF +SQ R+  A+FF+     +  +I+  MG   + K +AK AAR+GQCFS+T A    
Sbjct: 694  LAFGNSQFREHGAFFFASLPHLTAANIRAQMGDLNNIKVVAKYAARLGQCFSTTRAVTSC 753

Query: 568  PPT--EVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV--NPPPCAYQIRYAGC 623
            P    EVD    DI+RNGYVFSDG+G+++  L   +   L ++     PP A+Q R  GC
Sbjct: 754  PVQLKEVD----DIERNGYVFSDGVGRLSHFLTQMIRSDLGINTPSGQPPSAFQFRLGGC 809

Query: 624  KGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPD 683
            KG++A   +   G  + +R+S  KF + H  LEI   + F    LNRQ+I +LS L VPD
Sbjct: 810  KGILAV-SSDAHGQEVHIRKSQYKFAAAHHGLEIIRHSHFSLATLNRQLILVLSCLGVPD 868

Query: 684  EMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTA--AIMLSAGFNPQTEPHLRGM 741
            ++F +    M+ KL Q + + + A  +L         T   A M+  GF    EP +  +
Sbjct: 869  KVFIAKLRMMMDKLEQAMTNEEQAVHLLQTHVDPNQMTLILADMVRDGFQGSKEPFVSSL 928

Query: 742  LTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGS- 800
            L   R  Q+  L+EKA+I V  G +L+GC+DE   L+G   + + S P     + +  + 
Sbjct: 929  LELWRTWQIKYLKEKAKIAVDEGAFLLGCIDETKTLKG---YFRSSRPGQDATYEERVAC 985

Query: 801  ---------RFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQK 851
                     R +E K + +I+G  ++A+NP LHPGDIR+++AV+ P LHHL D +V PQ 
Sbjct: 986  LPEIFVQVWRHSEGKYV-IIEGVCILARNPSLHPGDIRVVKAVNAPSLHHLRDVVVLPQT 1044

Query: 852  GDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDII 909
            GDR  ++  SG DLDGD Y V WD++++P     W   PM+Y A + + L R V   DI 
Sbjct: 1045 GDRDISSMCSGGDLDGDDYVVIWDQDILP---TDWFHDPMDYAAPKPEVLDRDVTVDDIT 1101

Query: 910  EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAH 969
            +F+  +M N+ L  I  AH+  AD+ E G  +E C+ LA L + AVD+ K+G  V +  +
Sbjct: 1102 KFYVNYMQNDRLPQIALAHLALADYMEEGVKNEKCLQLAALHSAAVDYNKSGIPVKLTRN 1161

Query: 970  LKPKLY 975
            LKP+ +
Sbjct: 1162 LKPRSF 1167


>gi|302420105|ref|XP_003007883.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
 gi|261353534|gb|EEY15962.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
          Length = 1465

 Score =  350 bits (899), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 251/810 (30%), Positives = 393/810 (48%), Gaps = 132/810 (16%)

Query: 330  FEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKL 389
            F + + +   + +G++ +++LS  F D LRG  ++            KW +     R K 
Sbjct: 412  FPVQYQLEVCISRGVLCEYKLSQEFLDRLRGLQQD----------RAKWILEYFADRGKA 461

Query: 390  VQEWL--LKDPE---LYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLA 444
            V++ +   +  E    Y  P        VR++V+TPT  Y   P VE SNRV+RKY+ ++
Sbjct: 462  VEQPMDIFESHEANCYYPNPVVPHYCAIVRKVVVTPTTIYLSSPGVEASNRVIRKYQHVS 521

Query: 445  DRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGR 504
            DRFLRV F DE         L+         + L+ +     VFKRV   +  G  +  R
Sbjct: 522  DRFLRVQFTDE---------LTRGRISTRAKMELDHY-----VFKRVYLTMINGIRIGDR 567

Query: 505  KFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNI-AKCAARMGQCFSSTYA 563
             + FLAF +SQ+R+C A+FF E       ++++WMG F   +I AK AAR+GQCFS+T  
Sbjct: 568  HYKFLAFGNSQIRECGAYFFCETVHLKCTEMRQWMGNFNHIHIVAKFAARLGQCFSTTRE 627

Query: 564  --TVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYA 621
              ++  P  ++   +PDI+RNG+ F+DG+GKI+  LA  V +++ L+    P A+Q R  
Sbjct: 628  IRSIRAPNIQI---IPDIERNGHCFTDGVGKISSFLASMVLEEMGLETVETPSAFQFRMG 684

Query: 622  GCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNV 681
            GCKGV+A WP +  G+ + +R+S  KF++    LEI    RF    LNRQ IT+L++L +
Sbjct: 685  GCKGVLAVWP-EAKGMYVHIRKSQEKFKATFNGLEIIRCARFSAATLNRQTITILTSLGI 743

Query: 682  PDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGF--NPQTEPH 737
              E+F  +    L    + + D   A  +L     E   + A+  +++ GF  +   EP 
Sbjct: 744  KSEVFMDLLQRQLHSYEKAMNDQGAAAVLLGRHIDENHTSLALRDLINWGFMRHDVQEPF 803

Query: 738  LRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG----------------- 780
            +  +L   R   +  LR+KARI V  G +++GC+DE   L G                  
Sbjct: 804  VLTILQLWRVWSMKLLRDKARIVVDKGAFVLGCVDETATLRGHNRASEGQTTSRNVELLP 863

Query: 781  QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH 840
            Q F+Q+ +P   + F+             VIKG  ++ +NP LHPGDIR++EAVD P+L 
Sbjct: 864  QIFLQIPDPDDRHFFN-------------VIKGVCIVGRNPSLHPGDIRVVEAVDVPQLR 910

Query: 841  HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLT 900
            H+ + +VFP  GD    +  SG DLDGD +FV WD +LIPP   ++ PM+  A + K L 
Sbjct: 911  HMKNVVVFPSTGDVDVPSMLSGGDLDGDDFFVIWDPDLIPPV-WNFRPMDNAAPQTKVLD 969

Query: 901  RPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKT 960
            R V+ +D+                                    + LA+L + AVD+ K+
Sbjct: 970  RDVNTKDL-----------------------------------SLQLAKLHSKAVDYVKS 994

Query: 961  GKIVTMPAHLKPKLYPDFMGKEAYQS--YKSNKILGRLYRQSKDAYDEDISVSSEVDINP 1018
            G    +   L+ + +P FMG    ++  Y S   LG++Y + +D           V  NP
Sbjct: 995  GDPAELGRELRARRWPHFMGGRRNKNSIYHSYTALGQIYDRIQD-----------VPFNP 1043

Query: 1019 V-DIHYDTDLEV---PESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMP 1074
            + +  +D  +     P     +  A   K +YD  +  L+ Q +V+ E E+ TG   S P
Sbjct: 1044 LYEKKFDRRILTRFAPIDNAVLKQARRLKSTYDTAMRRLMAQREVSTEFEIWTGFPLSRP 1103

Query: 1075 KYNS---------RKQGELKERLKHSYSAL 1095
            +  +         R  G LK+  +    AL
Sbjct: 1104 RVGNAYKHSEDIGRDAGLLKQSFRDEVHAL 1133


>gi|164429758|ref|XP_964248.2| hypothetical protein NCU02178 [Neurospora crassa OR74A]
 gi|157073607|gb|EAA35012.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1049

 Score =  343 bits (879), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 224/634 (35%), Positives = 324/634 (51%), Gaps = 46/634 (7%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLR---------GQSR-EVNVAALKHIYSYK 377
            + F++ + +   + +GIIN+H +   F + L          G+ R  + +  +   Y+ K
Sbjct: 444  LPFDVRYQLEVCISQGIINEHNIDRPFLEKLMEFCDNDNSFGKDRARLILEYVADEYAGK 503

Query: 378  WPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVL 437
              +FD  +  K     L   P  +  P        VRR+ ITPT+ Y   P VE +NRV+
Sbjct: 504  -RIFDPMELFK-DHAALAYFPTSFMIPNHC---AWVRRVTITPTRIYFSTPCVEPTNRVI 558

Query: 438  RKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSG 497
            R++K   D F+R+ F DE L+                   + S   +  +F RV  +L  
Sbjct: 559  RQWKHAQDYFIRIQFTDEVLEG-----------------RIKSGEAELPLFLRVYRVLEK 601

Query: 498  GFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQ 556
            G  +    + FLAF +SQ+R+  A+ F E    +   ++ WMGRF+  K IAK AAR+GQ
Sbjct: 602  GVAMGPWHWKFLAFGNSQIREAGAFMFCEQSNLTGDMMRAWMGRFSHIKVIAKYAARLGQ 661

Query: 557  CFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAY 616
            CFS+T     +P   +   +PD++++G+ F+DG+GKI+P LA  VA    +D  PPP AY
Sbjct: 662  CFSTTRLVPGIPAPRI-VTIPDVEKDGFCFTDGVGKISPLLAKIVAHDWSID--PPPSAY 718

Query: 617  QIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLL 676
            Q R  GCKGV+  WP    G+ + +R+S  KF +    LE+   ++F    LNRQII +L
Sbjct: 719  QFRMGGCKGVLVTWP-DVKGMEVHIRKSQEKFVAEFNGLEVVRCSQFSTATLNRQIIAVL 777

Query: 677  STLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQT 734
            S+L VPD++F  M +  LS  N  + D   A  +L     E   T  I  ML+ GF    
Sbjct: 778  SSLGVPDQVFVDMMEQQLSDFNAAMEDKQKATAILKTFIDENHMTPIIAEMLAYGFMGSQ 837

Query: 735  EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQ----VSEPF 790
            EP +R +L   R+  +  L+EKAR+ V    +++GC+DE G L+G    I+    VS   
Sbjct: 838  EPFVRTLLQLWRSWSIKTLKEKARLNVEKSAFVLGCVDETGTLKGHMKVIEDWKDVSSEK 897

Query: 791  LGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQ 850
            L   F +           +VI G  V+ +NP LHPGDIR++EAVD P L HL D +VFP 
Sbjct: 898  LPQIFLQIPDDV--NGGYRVITGTCVVGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPL 955

Query: 851  KGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIE 910
             GDR   +  SG DLDGD +FV WD  LI P ++S PPM       K L       ++I 
Sbjct: 956  TGDRDVPSMCSGGDLDGDDFFVIWDPLLI-PKERSHPPMISEPIAGKELATEPTVNNLIT 1014

Query: 911  FFAKHMVNENLGTICNAHVVHADHSEYGALDENC 944
            FF  +M   NL  I +AH+  AD    G     C
Sbjct: 1015 FFVLYMKYNNLPLIAHAHLATADAEVEGVKSPKC 1048


>gi|425780985|gb|EKV18967.1| RNA-directed RNA polymerase (Sad-1), putative [Penicillium digitatum
            PHI26]
          Length = 1533

 Score =  342 bits (878), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 250/756 (33%), Positives = 377/756 (49%), Gaps = 89/756 (11%)

Query: 487  VFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-K 545
            ++ RV+  L+ G  +  R + FLAF +SQ R+  A+FF+ D   S   I+ WMG+F   +
Sbjct: 708  IYTRVKRTLANGISIGDRHYEFLAFGNSQFREHGAYFFAPDAGVSAATIRAWMGQFNHIR 767

Query: 546  NIAKCAARMGQCFSSTYA----TVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEV 601
            N+AK AAR+GQCFS+T A    +V+V          D+ RNG+ FSDG+GK++  LA  V
Sbjct: 768  NVAKYAARLGQCFSTTRAFTGSSVQVATCN------DVVRNGFTFSDGVGKVSKFLAQMV 821

Query: 602  AQK--LKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICS 659
              +  +K      P A+Q R  G KG++   P       + +R S  KF++    LEI  
Sbjct: 822  TSQHNIKTLTGESPSAFQFRLGGAKGMLVVSPDPMPQ-EVHIRPSQQKFETTQAGLEIIR 880

Query: 660  WTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQG 719
            W+++    LNRQ+I +LS L +PD++F S  +SML   ++++ +   A  +L        
Sbjct: 881  WSQYSLATLNRQLILVLSALGIPDKVFHSKLNSMLGSFHRVMCNDSKAINLLQKYIDPNQ 940

Query: 720  NTA--AIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVL 777
             T   A M+S GF    EP    ML   ++  L  L+EKA+I +  G  L+G +DE GVL
Sbjct: 941  TTLILAQMVSDGFRQNEEPFANTMLELWKSWHLKHLKEKAKIAIDQGANLLGVMDETGVL 1000

Query: 778  EG-------------GQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLH 824
            +G              Q    + E F+  C      R     + +VI+G  ++A+NP LH
Sbjct: 1001 KGYFKNTLPRRGASYAQKLAALPEIFVQIC------RLEGNGEYEVIEGLCILARNPSLH 1054

Query: 825  PGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKK 884
            PGDIR++ AV+ PEL  L D +V PQ GD+   +  SG DLDGD Y + WD +LI P++ 
Sbjct: 1055 PGDIRVVRAVNRPELKGLRDVVVLPQTGDQDIASMCSGGDLDGDDYLIIWDPDLI-PTRW 1113

Query: 885  SWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENC 944
                M+Y  ++A  L   V   +I  FF  +M N+ L  I +AH+  AD    G  +E C
Sbjct: 1114 FVECMDYKGSKAPDLDHDVTVDEITSFFVTYMKNDCLPRIAHAHLAWADRLPRGVWEEKC 1173

Query: 945  ILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQS---YKSNKILGRLYRQSK 1001
            I LA+L + AVD+ K+G    M   L PK +P FM K   +    YKS KILG+LY    
Sbjct: 1174 IRLAQLHSDAVDYNKSGAHARMARSLDPKFWPHFMEKRFKRPSSIYKSTKILGQLY---- 1229

Query: 1002 DAYDEDISVSSEVDINPVDIHYDTD-LEVP---ESVDFIADAWNQKCSYDGQLNGLLEQY 1057
                 D  V+    +  +   +D+  LE P    S  +I  A   K  +D  +  ++ QY
Sbjct: 1230 -----DAVVTPNF-VPKLGKPFDSRILESPLASASETYIEYARELKAEFDMNMRQIMAQY 1283

Query: 1058 KVNREEEL----VTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFR-QVFEKMDSDCEL 1112
            ++N E E+    V  H + +  Y      +++E L      LR+ FR Q ++K+      
Sbjct: 1284 EINTEFEVWSTFVLRHGFVIRDY------KMQEDLGRIVGTLRRGFRHQCYDKVGRHGGN 1337

Query: 1113 LSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQD------------SARSVVLLSFA 1160
            +S     AL      A Y+VT   E V  +L+ Q ++            S+  + L+SF 
Sbjct: 1338 IS-----AL----VIAMYRVTQ--EQVAAALEAQRKEALQREDLSVVEVSSTELPLISFP 1386

Query: 1161 WIANDYLARIKI-RCREMANIDTSKPVNYLARYVAD 1195
            WI  D L  +   R RE A +   + V+  A+ + D
Sbjct: 1387 WIFPDVLGDVATGRARE-ALVSEGQGVDDSAKSIGD 1421



 Score = 48.5 bits (114), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 68/326 (20%), Positives = 127/326 (38%), Gaps = 49/326 (15%)

Query: 173 CFTRDIAFALKSSTEHAVIKCEFKVEFLVREINLV-KQYSEFSCVAILLQLASSPRVWYR 231
           C        ++ S    V + +++V+    ++  + +QY + +    LL +  S  +W+R
Sbjct: 186 CLLLYFKVGIRGSETADVTQHDYRVKITFLQLTQIYQQYDKATSENSLLIILDSAAIWHR 245

Query: 232 TADDDILVLVPFDMLDDDDPWIRTTDFT--------------PSGAI---GRCNSYRISI 274
            A D    L       ++D W R T  T               +G I   GR N ++I+ 
Sbjct: 246 KAKDMQSTLAEPMSWREEDSWYRQTAVTHNPNSLKTLPTNLKKTGHIMDLGRWNVFKITF 305

Query: 275 SSRHRGKLSKV------ITYLGERRVQ-----------VDSLSRPITIREEPDFEVPMSD 317
                 K+ +V      +T +G+               V+   RP+ +    DF    S+
Sbjct: 306 GPDVDPKIHRVNDTGHCLTLVGDIFKDYNIFIRDGSHFVEKTDRPVPVWHWIDFSESKSN 365

Query: 318 PFFCIHYEEG------ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALK 371
               +  + G      + F++ + +   + +G +++  +S  F + ++    +     L+
Sbjct: 366 KASALLQDLGDQNYIHLPFKVRYQLEVCLSQGYLSEFSMSREFVEKVKDLGDDQATRLLE 425

Query: 372 HIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVE 431
            + + K    D  +   L      K     K P     +   R   +TPT  Y   P V+
Sbjct: 426 FVATEKKQYLDPMEIFDLK---FFKRVTDSKIPSYCCFMHTAR---VTPTTIYYNTPTVD 479

Query: 432 LSNRVLRKY--KDLADRFLRVTFMDE 455
           +SNRV+R++  K    RFLRV F DE
Sbjct: 480 ISNRVVREWSTKSAPGRFLRVRFTDE 505


>gi|391332207|ref|XP_003740528.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Metaseiulus
            occidentalis]
          Length = 1437

 Score =  340 bits (873), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 251/754 (33%), Positives = 375/754 (49%), Gaps = 77/754 (10%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            +RR+ ITPT+     PE+   NR+LR ++   D  +RV F D+ L+ +            
Sbjct: 411  IRRIFITPTRKIFRFPELHTQNRILRNFE--PDYAIRVCFRDDNLEKL------------ 456

Query: 473  VRDITLNSFSQKTR---VFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDG- 528
                T   F+ KT+   + + V   L  G  +  R++ F+A SSSQLRD   W ++ D  
Sbjct: 457  ----TFAIFNMKTKESFLKEVVGRHLCEGLKIGSRRYDFVAASSSQLRDHGVWVYARDQF 512

Query: 529  KTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKR------ 581
                  I+ WMG F D  N+A   ARMGQCFSST  TVE+ P E +    DI        
Sbjct: 513  GFEAETIRGWMGDFHDINNVATRMARMGQCFSSTQETVEILPEE-ELHWRDITHFESVHP 571

Query: 582  ---NGYVFSDGIGKITPDLAMEVAQKL-KLDVNPPPCAYQIRYAGCKGVVACWPAKGDGI 637
                 Y FSDG GKI+ +L  +V   L    +   P A QIRY GCKG+++       G 
Sbjct: 572  LSGRPYCFSDGCGKISQELMQQVWCTLPHHAMELHPSALQIRYRGCKGMISL-DTTLPGR 630

Query: 638  RMSLRESMNKFQ-SHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSK 696
            ++ LRESM KFQ +    LE+  W+     FLNR +I +L    +  ++F  +Q  M+ +
Sbjct: 631  KLVLRESMIKFQCTSPRKLEVIKWSAPMNMFLNRSLIAILEHHGIRTDVFLRLQLEMIMQ 690

Query: 697  LNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREK 756
            +   LV    A  VLT+        A +    G+    +P +  ML  +    L  L+ K
Sbjct: 691  VADSLVCEASALRVLTSFVKTPVPFAGLA-EVGWELVRDPFIIQMLYDLLKNALVNLKVK 749

Query: 757  ARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSE-PFLGNCFSKHGSRFAETKKLQVIKG 813
            A + +P   GR ++G +DE G+L+ GQ FIQ +E P+                ++++++G
Sbjct: 750  ANVAIPVNEGRNMLGVVDETGILDYGQVFIQFTEMPYTD----------VSNARVRIVEG 799

Query: 814  FVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVT 873
             VVI K PC+HPGD+R L AVD P+L H+ DC+VFP +G  PH  E SGSDLDGD Y   
Sbjct: 800  DVVITKCPCMHPGDVRRLRAVDVPQLRHIRDCVVFPSRGKAPHPFEMSGSDLDGDEYVCI 859

Query: 874  WDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQR-DIIEFFAKHMVNENLGTICNAHVVHA 932
            W E LI         M Y   +      P     D   FF  ++ N+ +G I NAH+  A
Sbjct: 860  WSEELIFERN----AMPYVYDDKPFGVNPFKHNSDETNFFCNYIGNDIIGIISNAHLAWA 915

Query: 933  DHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQ-SYKSNK 991
            D +  G   E C+ L   A+ A+DF KTG    +  + KP+ +PDFM K  ++ SY+S K
Sbjct: 916  DQA--GIASEKCLALVGKASKALDFAKTGDAADLYPNEKPEKFPDFMEKGDHKHSYQSQK 973

Query: 992  ILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLN 1051
             LG LYR  +     + ++ S+ +I P        LEVP    F   A      Y+ +L 
Sbjct: 974  ALGILYRTVRQIMAVNDTMLSKGNIAP--------LEVPGWQMFRERAQAALQRYNERLA 1025

Query: 1052 GLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKER-------LKHSYSALRKEFRQVFE 1104
             ++EQ+ V  E E+ +G I ++  +++      +         ++     L +E +Q F+
Sbjct: 1026 HIMEQHGVVSEGEVFSGVIGTVNTFDAVSTSSFRAEKANIALLIERQKCVLMEETKQQFQ 1085

Query: 1105 -KMDSDCELL---SEDEKNALFERKASAWYQVTY 1134
             + + DC L    +E++++ +  +KASAWY VTY
Sbjct: 1086 CEFEEDCALFGARTEEDRHMIRIQKASAWYMVTY 1119


>gi|19114207|ref|NP_593295.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces pombe 972h-]
 gi|59800170|sp|O14227.1|RDR1_SCHPO RecName: Full=RNA-dependent RNA polymerase 1; Short=Protein rdp1
 gi|2330856|emb|CAB11093.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces pombe]
          Length = 1215

 Score =  340 bits (872), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 273/949 (28%), Positives = 451/949 (47%), Gaps = 80/949 (8%)

Query: 261  SGAIGRCNSYRISISSRHRGKLSKVITYLGE-RRVQVDSLSRPITIREEPDFEVPMSDPF 319
            +  IGRCN   +S S R       +   L    +  + S    +     PD++   S   
Sbjct: 315  NAPIGRCNVLVLSFSIRDESDKDDIAFLLHNLEKFNLKSQLDKVVFHLVPDYKHRCS--- 371

Query: 320  FCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWP 379
              +  ++ I  EI +L+ A + K ++++  L     +L +  S+E     L+ I + K  
Sbjct: 372  --LINDKEIEEEIAYLLQACLSKNLLSEIDLPIILANL-KKLSKERAKKFLRLILTSKTA 428

Query: 380  VFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRK 439
            + +  + L   + ++  D             + +++L +TPT    +   +E  NRV+R 
Sbjct: 429  LINPSE-LDFTKSFVFYDLSSASS-------IHIKKLYVTPTTLRIVEDSLEAGNRVIRN 480

Query: 440  YKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGF 499
            +KD A+RF+RV   DE            +    +R  + + F +  +++ R++ +L+ G 
Sbjct: 481  FKDFANRFMRVQITDE------------YYKQKIRGGS-DGF-RNEKLYSRIQQLLTYGI 526

Query: 500  YLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKN-IAKCAARMGQCF 558
             +  + + FLAF +SQLR+  A+FF+     +   I++WMG F++ N ++K AARMGQCF
Sbjct: 527  KVGNQIYEFLAFGNSQLREHGAYFFASGSDLNAKQIREWMGDFSEINSVSKYAARMGQCF 586

Query: 559  SSTYATVEVPPTEVDPELPD-IKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPP---PC 614
            S+T    E+    VD  L D I RN + F+DG+G  +    + V ++L L+V      P 
Sbjct: 587  STTK---EINRFCVDISLQDDIVRNNHCFTDGVGMAS----LSVIRRLSLEVKNHDMFPS 639

Query: 615  AYQIRYAGCKGVVACWPAKG----DGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNR 670
            A+Q R  G KGV++  P        G  +  R S +KF+S H+TLE+   +RF    LN 
Sbjct: 640  AFQFRMGGYKGVLSLAPPTKLEYHQGNLVFPRRSQDKFKSFHSTLEVIKISRFSNAHLNM 699

Query: 671  QIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSA 728
            Q+ITLL  L V   +F  +  S LSK+N+ +     +  +L     E  +T  I   + A
Sbjct: 700  QLITLLEGLGVEKTVFLELTRSQLSKMNESINSKQKSILMLRDNVDEYHSTLIIADFIQA 759

Query: 729  GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG--GQCFIQV 786
            GF  + +     +L       L  ++EK ++ VP G +L+G  DE G L+G      + V
Sbjct: 760  GFLERDDAFTENLLNLYYEWVLRLIKEKQKVSVPKGAYLLGVADETGTLKGHYDDAVLSV 819

Query: 787  SEPFL--GNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD 844
             E F+   +  +  GS      K +VI G  ++A+NP LHPGD+R+ +AV   EL HL +
Sbjct: 820  PEIFIQITDTSTSFGSYSTGKLKTRVIVGLCIVARNPSLHPGDVRVCKAVRCDELMHLKN 879

Query: 845  CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI------PPSKKSWPPMEYNAAEAKT 898
             +VFP  GDR      SG DLDGD Y V WD+ L+      PP  +S P    +  E K 
Sbjct: 880  VIVFPTTGDRSIPAMCSGGDLDGDEYTVIWDQRLLPKIVNYPPLLESSPKKSIDFLEGKP 939

Query: 899  LTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHA---DHSEYGALDENCILLAELAATAV 955
            L   V      EFF  ++  ++LG I NA    A   D++  G     C+ LAE+ + AV
Sbjct: 940  LIDSVK-----EFFVNYIKYDSLGLISNAWKAWAHDHDNNPEGIFGNVCLELAEMHSKAV 994

Query: 956  DFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVD 1015
            DF K+G    M A   PK YPDFM K   +S++S   +G+++R +     E         
Sbjct: 995  DFAKSGVACKMQAKYHPKRYPDFMQKTKTRSFRSETAVGKIFRYAARFQRES---GRPAT 1051

Query: 1016 INPV-DIHYDTDLEVPE-SVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHI-WS 1072
             NP+ +  YD  +++P    +++  A   K  YD  L  ++ ++ ++ E E+ T  I + 
Sbjct: 1052 YNPIMNTVYDPCMKLPRFKTEYLNVAEEVKKHYDNDLRSIMARFDISTEYEVYTAFILFK 1111

Query: 1073 MPKYNSRKQGELKERLKHSYSALRKEFRQVF-EKMD-SDCELLSEDEKNALFERKASAWY 1130
                 +  +  L+E +   +  L+K++ Q + EK   S+       E         +A Y
Sbjct: 1112 DDLAKTVNEYGLREEVSFQFDLLKKKYTQEYLEKCALSNQSAFDSSEYEERINSAVAATY 1171

Query: 1131 QVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMAN 1179
             VTY          ++   +  + VL+SF ++ +  L ++  +    AN
Sbjct: 1172 DVTYDQR-------VKSVGNGTTEVLISFPYLFSSRLCQLSRKAMLTAN 1213


>gi|367021614|ref|XP_003660092.1| hypothetical protein MYCTH_2297939 [Myceliophthora thermophila ATCC
            42464]
 gi|347007359|gb|AEO54847.1| hypothetical protein MYCTH_2297939 [Myceliophthora thermophila ATCC
            42464]
          Length = 1033

 Score =  339 bits (869), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 222/647 (34%), Positives = 329/647 (50%), Gaps = 66/647 (10%)

Query: 327  GISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKR 386
             + F++ + +   + +GI++++ +   + + L   S   N              + A  R
Sbjct: 424  ALPFDVRYQLEVCVSRGILSEYNIGREWLEKLSSFSGPAN--------------WGAANR 469

Query: 387  LKLVQEWL------LKDP-ELYKGPKQI----------DDIVEVRRLVITPTKAYCLPPE 429
             +L+ E+       + DP EL+K    +          D    +RR ++TPT+ Y   P 
Sbjct: 470  ARLILEYAADQGRPIHDPLELFKDHGAMTYYPATLHIPDYCALIRRAIVTPTRMYFSTPT 529

Query: 430  VELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFK 489
            VE SNRV+R+Y+ + D FLRV F DE L                  I      +   ++ 
Sbjct: 530  VETSNRVVRRYQHIQDHFLRVQFTDELLDGR---------------IRACEVDRDDELYA 574

Query: 490  RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF--SEDGKTSVLDIKKWMGRFTD-KN 546
            RV  +++ G  +    + FLAF +SQ+R+ +A+FF   EDG  +   I++WMG F    +
Sbjct: 575  RVCRVMTQGIRMGKWHWKFLAFGNSQIRESAAFFFCEPEDGSVTCDSIRQWMGNFDHITS 634

Query: 547  IAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK-RNGYVFSDGIGKITPDLAMEVAQKL 605
            +AK AAR+GQCFS+T     +    +   +PD++  NG+ F+DGIGKI+  LA  VA+  
Sbjct: 635  VAKLAARLGQCFSTTRLLHCISSPRI-ARIPDVESENGFCFTDGIGKISLPLACLVAEDW 693

Query: 606  KLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQP 665
            KLD   PP A Q R  GCKGV+  WP    G  + +R S  KF + +  LEI   ++F  
Sbjct: 694  KLDR--PPSAVQFRMGGCKGVLVQWP-NVKGTEIHIRPSQEKFCAEYNGLEIIRCSQFSC 750

Query: 666  GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI- 724
              LNRQ I +LS L V DE+F  M  S ++  +  + D D A E+L     E   T  I 
Sbjct: 751  ATLNRQTILILSCLGVSDEVFIDMMASQIANFDAAMTDKDTAVELLDNYVDENLTTTTIA 810

Query: 725  -MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG---- 779
             ML  GF    EP +R +L   R+  +  L+EKAR+ V  G +++GC+DE G L G    
Sbjct: 811  SMLRNGFMHTREPFVRTVLQLWRSWSIKALKEKARLVVEQGAFVLGCVDETGTLRGYSRA 870

Query: 780  --GQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP 837
              GQ    VS   L   F +   R       +V+ G  ++ +NP LHPGDIR++EAVD P
Sbjct: 871  TEGQS--NVSRDQLPQIFFQVPDR-DHRHAYKVVTGLCIVGRNPSLHPGDIRVVEAVDVP 927

Query: 838  ELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAK 897
            +L HL D +VFP +GDR   +  SG DLDGD +FV WD  L+ P++   PPM Y+A +  
Sbjct: 928  QLRHLRDVVVFPLRGDRDVPSMCSGGDLDGDDFFVIWDPRLL-PAEWGHPPMNYSAPQPP 986

Query: 898  TLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENC 944
              +R    + +  FF   M N+ L  I +AH+  AD+   GA    C
Sbjct: 987  IESRASLAKSLAFFFVLFMKNDRLPLIAHAHLARADYELEGAKHWKC 1033


>gi|290974592|ref|XP_002670029.1| RNA-directed RNA polymerase [Naegleria gruberi]
 gi|284083583|gb|EFC37285.1| RNA-directed RNA polymerase [Naegleria gruberi]
          Length = 663

 Score =  337 bits (863), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 225/665 (33%), Positives = 345/665 (51%), Gaps = 64/665 (9%)

Query: 539  MGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDL 597
            MG FTD K  AK AAR GQC +ST  ++E+   +++P + DI+RNG+ F+DGIGKI+ ++
Sbjct: 1    MGDFTDIKTPAKVAARFGQCLTSTTPSIEITK-DIEP-VEDIERNGFTFTDGIGKISEEM 58

Query: 598  AMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPA-KGDGIRMSLRESMNKFQSHHTTLE 656
               V +KL+L       A Q R  G KGV+A  P  KG+ I    R+S  KF S    LE
Sbjct: 59   MQRVKEKLQLG-ESLLSAIQFRCGGGKGVLAIDPTLKGEQI--VFRKSQFKFTSIQKQLE 115

Query: 657  ICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACA 716
            I  +++ + GFLNRQ IT+L+ L + DE+F + Q  M+  +  +  D   A+E L+   +
Sbjct: 116  IVDYSKRRSGFLNRQFITILTALGIKDEIFMTKQREMIRSILSITDDVSKAYEWLSIYHS 175

Query: 717  EQGNTAAIMLSAGFNPQ---TEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDE 773
                T  I     + P+   +E  +  ML+  +   L GLR+K +I++    +LMG +DE
Sbjct: 176  NHTRTF-ICHVLKYVPEIATSENFIMNMLSSYKEQLLKGLRDKTKIYIEKSAYLMGAIDE 234

Query: 774  LGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEA 833
             GVLE  + F+ +S       F +  + F       V+KG  ++ KNP LH GD+RI+ A
Sbjct: 235  YGVLEENEIFVNLSP-----IFHRPNAEFG------VVKGRCIVGKNPSLHKGDLRIVTA 283

Query: 834  VDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNA 893
            VD PEL+HL D +VF +KG RP TN  +GSDLDGD +FV WD +LIP S     PM+Y+ 
Sbjct: 284  VDRPELYHLNDVVVFSKKGKRPITNMITGSDLDGDQFFVYWDPDLIPESDSE--PMDYSV 341

Query: 894  AEAKTLTRPVD---------QRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENC 944
                  T   D         Q DII+FF + +   NLG I N H+ ++D  + G   + C
Sbjct: 342  GAVAKPTNKKDEEEEEYKIKQDDIIDFFIEFITRNNLGLIANTHLANSDFRKNGLTSKEC 401

Query: 945  ILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAY 1004
            + L EL +TAVD  K+GK   +P+ +K   YP FM     + YKS K+LG+L+ +++  +
Sbjct: 402  LTLCELHSTAVDSAKSGKFAIIPSKVKLYEYPHFMISSMKRKYKSKKVLGKLFDETQFKH 461

Query: 1005 DEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEE 1064
            +              +  +++ L V     ++ +      +Y   +N  + +Y V  E +
Sbjct: 462  ETP---------GKCNKKHNSLLIVDGFDKYLKEIEPHYYNYSRFVNSDMVKYGVEDESQ 512

Query: 1065 LVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFER 1124
            +++G I +  K    K+ ++ E +  + S   K FR VFE+M        E E+ A+   
Sbjct: 513  IISGWINTNIKCFGHKEHDIHETIAITISFYLKHFRNVFEEM---VRKYGESERLAI--- 566

Query: 1125 KASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSK 1184
             ASAWY +T H E                  + SF WI    L  I  + +E+  +D+ +
Sbjct: 567  -ASAWYYIT-HTE-------------KNQFNIFSFGWINFKELVMIATKEKEI-RVDSDE 610

Query: 1185 PVNYL 1189
             +  L
Sbjct: 611  EIQNL 615


>gi|339242799|ref|XP_003377325.1| RNA dependent RNA polymerase family protein [Trichinella spiralis]
 gi|316973886|gb|EFV57430.1| RNA dependent RNA polymerase family protein [Trichinella spiralis]
          Length = 1417

 Score =  336 bits (861), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 295/930 (31%), Positives = 449/930 (48%), Gaps = 134/930 (14%)

Query: 294  VQVDSLSRP-ITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSD 352
            + VD+L R     RE  D+      PF+C +Y         +L     H  I+  +QL++
Sbjct: 286  ISVDNLVREDFAKREIGDW------PFWCQYY---------WLALGSRHHSIV--YQLTN 328

Query: 353  SFFD----LLRGQSREVNVAALKH---IYSYKWPVFDACKRLKLV--QEWLLKDPELYKG 403
             FFD     L    R   VA ++    I +    + +  +R + V  ++  L D +    
Sbjct: 329  HFFDEVSRCLTENLRSTEVAFIQLLCIIDNNSQLIVNVRQRFRQVYDKQCSLTDNDYSIE 388

Query: 404  PKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNAN 463
                   V VR++VITPT+     P+  +SNR+LR++   +D  LRV F DEG   + A+
Sbjct: 389  LDLAAPYVSVRKVVITPTRVLLSVPDKMMSNRILRQFG--SDLALRVIFRDEGGTRIPAS 446

Query: 464  VLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF 523
              S           L S  Q       V +++  G  +  R + FL +S+SQLRD   +F
Sbjct: 447  KFS-----------LTSLKQI------VTTVMMKGLAIGPRLYQFLGWSNSQLRDHGCYF 489

Query: 524  FSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVP--------PTEVDP 574
            ++   + +V +I++WMG F+  +++ K  +RMGQCF+  +A   +P          E D 
Sbjct: 490  YASTEQVNVEEIRRWMGDFSSIRSVPKLMSRMGQCFTQAFAITAIPFNPDSKEVLIETDI 549

Query: 575  ELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKG 634
            +  D K   + FSDGIG+++  LA EVA++L+L   P P A+QIRYAG KG++   P   
Sbjct: 550  QSSDSK---FCFSDGIGRMSTKLAEEVAERLEL--WPVPSAFQIRYAGFKGMLCVDPRLD 604

Query: 635  DGIRMSLRESMNKFQSHHT-TLEICSWTRFQPGFLNRQIITLLSTL----NVP-----DE 684
              ++M  R+SM+KF +    TLEI   ++     LNR +I +L  +     VP       
Sbjct: 605  GDVKMVFRQSMHKFHTEGAHTLEIVKHSQPCEVNLNRPLIMILDQVAFKEGVPVNGRVQN 664

Query: 685  MFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGML-T 743
                + D  + +L+QML+  D A  VL+A    + N   +   AGF    EP  R ML  
Sbjct: 665  RIMQLLDQQICELSQMLLFEDQAKSVLSATMHSEMNFEKLA-DAGFRFTEEPFFRNMLLA 723

Query: 744  CIRAAQLWGL-REKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRF 802
            C +      L R K  I    GR + G +DELG+L  GQ FIQ S   L         R 
Sbjct: 724  CYKFKVKEKLFRMKIEIDPSLGRTMYGVMDELGLLHPGQVFIQCSANIL---------RP 774

Query: 803  AETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASG 862
             E K+  VI G V++ K+P + PGD+RIL AVD    H+L D +VFP+ G RP T++ +G
Sbjct: 775  GEDKR--VITGKVMVTKSPSVVPGDVRILTAVDLEIYHYLNDVIVFPKIGYRPVTDQMAG 832

Query: 863  SDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLG 922
            SDLDGD Y V WDE L+  +  ++P M Y    +  +   +    +++FF  ++ ++++G
Sbjct: 833  SDLDGDEYAVIWDEELMFCN--NYPAMLYEKVISSEIDGDITSDKMVDFFLHYICSDSIG 890

Query: 923  TICNAHVVHADHSEYGALDE--NCILLAELAATAVDFPKTGKIVTMPAHLK----PKLYP 976
             I  AH+V +D   YG  D+  NCI  A   + AVDFPK+G     P  L+    P  YP
Sbjct: 891  RIAIAHLVASD--SYGIFDDVSNCI--ARKHSMAVDFPKSG---VTPPKLENDEIPLKYP 943

Query: 977  DFMGKEAYQSYKSNKILGRLYRQSKDAYD-EDISVSSEVDINPVDIHYDTDLEVPESVDF 1035
            D++ K     Y+S  +LG LYR+        ++S++ +V     D H    L++ E+ +F
Sbjct: 944  DYIPKCYNSLYRSKWLLGSLYRKVYMLNSIAELSLARKVTTGKSDPH----LKIAEAKNF 999

Query: 1036 IADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPK------------YNSRKQGE 1083
               A      Y  +L+ LL++Y +  E +L+TG I  M              YN+ K   
Sbjct: 1000 EEKARAIFQRYKSELHSLLDEYGIENEFQLITGKITKMHSRLSDGERDDFSYYNTEKV-- 1057

Query: 1084 LKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSL 1143
            LK RL       +K F   F  + S  +L +  E  A     ASAWY V Y    +    
Sbjct: 1058 LKVRLGMLQKKYKKLFVSQFSSVVSKEQLANYTEVQA----AASAWYSVAYRDAEI---- 1109

Query: 1144 DLQEQDSARSVVLLSFAWIANDYLARIKIR 1173
                  S R+   LSF W+  + L  +K++
Sbjct: 1110 ------SNRTA--LSFPWLVWEVLLDLKLK 1131


>gi|392861850|gb|EAS37560.2| hypothetical protein CIMG_02715 [Coccidioides immitis RS]
          Length = 1195

 Score =  335 bits (858), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 259/818 (31%), Positives = 381/818 (46%), Gaps = 119/818 (14%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V+V R  +TP+  Y   P +E  NRVLR+Y D  + FLRV F+DE               
Sbjct: 414  VKVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGD------------ 461

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF-----S 525
            P+  D      S      +R + +L  G  + G  FSFL FS S LR  + WF      S
Sbjct: 462  PVYFD---PQASLHNIFHERFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWFVAPFTTS 518

Query: 526  EDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGY 584
               +     I + +G F+   + AK AAR+GQ FS T  ++ +P   V    PD+KRNG 
Sbjct: 519  SGERFDAQSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAIPEDAVFLNEPDMKRNGR 578

Query: 585  VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
            VFSDG+G  +P L  ++  +  L     P  +QIR+AG KG+V+    +  G ++ LRES
Sbjct: 579  VFSDGVGTFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSL-DTRLKGEQLRLRES 637

Query: 645  MNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSML-------- 694
            M KF +     +E+C S  R  P +LN QII +L  L VP   F  +Q   +        
Sbjct: 638  MVKFSARRAFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDEIERLLSVGK 697

Query: 695  --SKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWG 752
              SK +Q L +S +A EV      E      I+   GF+   +P LR ++      ++  
Sbjct: 698  SASKTSQFLEESSIAKEVRVPWLIE------ILHGLGFHHDQDPFLRSVVQLAIFFKMRD 751

Query: 753  LREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIK 812
            L+ +ARI VP    L G +DE G L  G+ F      FL            E  +  +++
Sbjct: 752  LKYRARIRVPEAVTLYGIMDETGYLNEGEIFCT----FLNE----------EGGREILVR 797

Query: 813  GFVVIAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDL 869
              V++ + P LHPGD++  +AVD PE   L  L++C++F Q G R   +  SG DLDGDL
Sbjct: 798  DQVIVTRAPALHPGDVQYAKAVDVPENSPLRSLHNCVIFSQHGFRDLPSMLSGGDLDGDL 857

Query: 870  YFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHV 929
            Y V +DE L+PP   ++PP  Y   E K L R V + DII+FF   M  + LG I   H 
Sbjct: 858  YNVIYDERLMPPC--TYPPANYPKVEEKLLDREVVRDDIIDFFVTFMQQDQLGRIATIHQ 915

Query: 930  VHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK-PKLYPDFMG-------- 980
              AD    G LD++C+LLAEL + AVDF K+G  V +    K P+ YPDFM         
Sbjct: 916  AIADQRPAGTLDQDCLLLAELHSVAVDFSKSGIPVDLTRIPKRPRYYPDFMAPSPRIKIA 975

Query: 981  -------KEAY---------------QSYKSNKILGRLYRQ-SKDAYDEDISVSSEVD-- 1015
                   +E Y               + YKSN+ILG +YR  ++  +   +  +S++   
Sbjct: 976  DSIEVVEEEQYLAEDEDDDEDERPQRRYYKSNRILGVMYRNINEQEFLNAVRNASKLRRD 1035

Query: 1016 ----INPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVN------REEEL 1065
                +N +  +  ++ E  +    + D    K  Y+ +L  +++QY          E E+
Sbjct: 1036 DNTLLNAIWDYVASETEGFQWDHLVEDGRKVKDIYEDKLREIMQQYSKTPWKSSLTEVEV 1095

Query: 1066 VTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERK 1125
            V G I       SR+  E  + ++  Y  L      +    DS  +       ++L    
Sbjct: 1096 VMGSILGQNSKQSRRDKEASQSMREEYQELVNFTISMLTDRDSGGD-------DSLERSI 1148

Query: 1126 ASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIA 1163
            AS W+ +  H ++           S + V LLSF WIA
Sbjct: 1149 ASFWHAL--HAKYSGSR-------SQKKVALLSFPWIA 1177


>gi|320034943|gb|EFW16885.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira]
          Length = 1195

 Score =  333 bits (854), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 259/818 (31%), Positives = 380/818 (46%), Gaps = 119/818 (14%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V+V R  +TP+  Y   P +E  NRVLR+Y D  + FLRV F+DE               
Sbjct: 414  VKVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGD------------ 461

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF-----S 525
            P+  D      S      +R + +L  G  + G  FSFL FS S LR  + WF      S
Sbjct: 462  PVYFD---PQASLHNIFHERFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWFVAPFTTS 518

Query: 526  EDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGY 584
               +     I + +G F+   + AK AAR+GQ FS T  ++ +P   V    PD+KRNG 
Sbjct: 519  SGERFDAQSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAIPEDAVFLNEPDMKRNGR 578

Query: 585  VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
            VFSDG+G  +P L  ++  +  L     P  +QIR+AG KG+V+    +  G ++ LRES
Sbjct: 579  VFSDGVGTFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSL-DTRLKGEQLRLRES 637

Query: 645  MNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSML-------- 694
            M KF +     +E+C S  R  P +LN QII +L  L VP   F  +Q   +        
Sbjct: 638  MVKFSARRAFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDEIERLLSVGK 697

Query: 695  --SKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWG 752
              SK +Q L +S +A EV      E      I+   GF+   +P LR ++      ++  
Sbjct: 698  SASKTSQFLEESSIAKEVRVPWLIE------ILHGLGFHHDQDPFLRSVVQLAIFFKMRD 751

Query: 753  LREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIK 812
            L+ +ARI VP    L G +DE G L  G+ F      FL            E  +  +++
Sbjct: 752  LKYRARIRVPEAVTLYGIMDETGYLNEGEIFCT----FLNE----------EGGREILVR 797

Query: 813  GFVVIAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDL 869
              V++ + P LHPGD++  +AVD PE   L  L++C++F Q G R   +  SG DLDGDL
Sbjct: 798  DQVIVTRAPALHPGDVQYAKAVDVPENSPLRSLHNCVIFSQHGFRDLPSMLSGGDLDGDL 857

Query: 870  YFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHV 929
            Y V +DE L+PP   ++PP  Y   E K L R V + DII+FF   M  + LG I   H 
Sbjct: 858  YNVIYDERLMPPC--TYPPANYPKVEEKLLDREVLRDDIIDFFVTFMQQDQLGRIATIHQ 915

Query: 930  VHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK-PKLYPDFMG-------- 980
              AD    G LD +C+LLAEL + AVDF K+G  V +    K P+ YPDFM         
Sbjct: 916  AIADQRPAGTLDRDCLLLAELHSVAVDFSKSGIPVDLTRIPKRPRYYPDFMAPSPRIKIA 975

Query: 981  -------KEAY---------------QSYKSNKILGRLYRQ-SKDAYDEDISVSSEVD-- 1015
                   +E Y               + YKSN+ILG +YR  ++  +   +  +S++   
Sbjct: 976  DSIEVVEEEQYLAEDEDDDEDERPQRRYYKSNRILGVMYRNINEQEFLNAVRNASKLRRD 1035

Query: 1016 ----INPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVN------REEEL 1065
                +N +  +  ++ E  +    + D    K  Y+ +L  +++QY          E E+
Sbjct: 1036 DNTLLNAIWDYVASETEGFQWDHLVEDGRKVKDIYEDKLREIMQQYSKTPWKSSLTEVEV 1095

Query: 1066 VTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERK 1125
            V G I       SR+  E  + ++  Y  L      +    DS  +       ++L    
Sbjct: 1096 VMGSILGQNSKQSRRDKEASQSMREEYQELVNFTISMLTDRDSGGD-------DSLERSI 1148

Query: 1126 ASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIA 1163
            AS W+ +  H ++           S + V LLSF WIA
Sbjct: 1149 ASFWHAL--HGKYSGSR-------SQKKVALLSFPWIA 1177


>gi|303322200|ref|XP_003071093.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
            delta SOWgp]
 gi|240110792|gb|EER28948.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
            delta SOWgp]
          Length = 1195

 Score =  332 bits (851), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 258/818 (31%), Positives = 379/818 (46%), Gaps = 119/818 (14%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V+V R  +TP+  Y   P +E  NRVLR+Y D  + FLRV F+DE               
Sbjct: 414  VKVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGD------------ 461

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF-----S 525
            P+  D      S      +R + +L  G  + G  FSFL FS S LR  + WF      S
Sbjct: 462  PVYFD---PQASLHNIFHERFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWFVAPFTTS 518

Query: 526  EDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGY 584
               +     I + +G F+   + AK AAR+GQ FS T  ++ +P   V    PD+KRNG 
Sbjct: 519  SGERFDAQSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAIPEDAVFLNEPDVKRNGR 578

Query: 585  VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
            VFSDG+G  +P L  ++  +  L     P  +QIR+AG KG+V+    +  G ++ LRES
Sbjct: 579  VFSDGVGTFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSL-DTRLKGEQLRLRES 637

Query: 645  MNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSML-------- 694
            M KF +     +E+C S  R  P +LN QII +L  L VP   F  +Q   +        
Sbjct: 638  MVKFSARRAFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDEIERLLSVGK 697

Query: 695  --SKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWG 752
              SK +Q L +S +A EV      E      I+   GF+   +P LR ++      ++  
Sbjct: 698  SASKTSQFLEESSIAKEVRVPWLIE------ILHGLGFHHDQDPFLRSVVQLAIFFKMRD 751

Query: 753  LREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIK 812
            L+ +ARI VP    L G +DE G L  G+ F      FL            E  +  +++
Sbjct: 752  LKYRARIRVPEAVTLYGIMDETGYLNEGEIFCT----FLNE----------EGGREILVR 797

Query: 813  GFVVIAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDL 869
              V++ + P LHPGD++  +AVD PE   L  L++C++F Q G R   +  SG DLDGDL
Sbjct: 798  DQVIVTRAPALHPGDVQYAKAVDVPENSPLRSLHNCVIFSQHGFRDLPSMLSGGDLDGDL 857

Query: 870  YFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHV 929
            Y V +DE L+PP   ++PP  Y   E K L R V + DII+FF   M  + LG I   H 
Sbjct: 858  YNVIYDERLMPPC--TYPPANYPKVEEKLLDREVVRDDIIDFFVTFMQQDQLGRIATIHQ 915

Query: 930  VHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK-PKLYPDFMG-------- 980
              AD    G LD +C+LLAEL + AVDF K+G  V +    K P+ YPDFM         
Sbjct: 916  AIADQRPAGTLDRDCLLLAELHSVAVDFSKSGIPVDLTRIPKRPRYYPDFMAPSPRIKIA 975

Query: 981  -------KEAY---------------QSYKSNKILGRLYRQ-SKDAYDEDISVSSEVD-- 1015
                   +E Y               + YKSN+ILG +YR  ++  +   +  +S++   
Sbjct: 976  DSIEVVEEEQYLAEDEDDDEDERPQRRYYKSNRILGVMYRNINEQEFLNAVRNASKLRRD 1035

Query: 1016 ----INPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVN------REEEL 1065
                +N +  +  ++ E  +    + D    K  Y+ +L  +++QY          E E+
Sbjct: 1036 DNTLLNAIWDYVASETEGFQWDHLVEDGRKVKDIYEDKLREIMQQYSKTPWKSSLTEVEV 1095

Query: 1066 VTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERK 1125
            V G I       SR+  E  + ++  Y  L      +    DS  +       ++L    
Sbjct: 1096 VMGSILGQNSKQSRRDKEASQSMREEYQELVNFTISMLTDRDSGGD-------DSLERSI 1148

Query: 1126 ASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIA 1163
            A  W+ +  H ++           S + V LLSF WIA
Sbjct: 1149 ACFWHAL--HGKYSGSR-------SQKKVALLSFPWIA 1177


>gi|119370382|gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana attenuata]
          Length = 1044

 Score =  328 bits (841), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 237/647 (36%), Positives = 343/647 (53%), Gaps = 63/647 (9%)

Query: 218 ILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSR 277
           +LLQL  +PR+  R  D        F     DD W+RTTDFTPS  IG  +S  +   + 
Sbjct: 166 LLLQLFGAPRIHKRLEDS----CNSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFHNG 220

Query: 278 HR-GKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFF-CIHYEEGIS--FEIM 333
            R    S    Y  E        S P    +   F           +H  EG+   ++I+
Sbjct: 221 VRLPNFSGSFFYYKE--------SGPSYFTDWFTFSFVQKLSLVPIVHLPEGVELPYKIL 272

Query: 334 FLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKH----IYSYKWPVFDACKRLKL 389
           F +++++  G      L+ +FF L+  + R  N+A ++H    +Y  K   +D  + L  
Sbjct: 273 FKISSLIQHGCFPGLALNFNFFQLVDPRRR--NIACIEHALEKLYYLKECCYDPVRWLTE 330

Query: 390 VQEWLLKDPELYKGPK-QIDD-IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRF 447
             +  LK  +L K P   +DD +V VRR+++TP K Y   PEV +SNRVLR Y +  D F
Sbjct: 331 QYDEYLKHRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 390

Query: 448 LRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFS 507
           LRV+F+DE  + +++  L      + R  T N    +T ++ R+ S L  GF +  +KF 
Sbjct: 391 LRVSFVDEEWEKIHSTDL------LPRASTGNGI--RTDIYLRILSTLRNGFVIGDKKFE 442

Query: 508 FLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVE 566
           FLAFSSSQLRD S W F+     +  DI+ WMG F   +N+AK AAR+GQ F S+  T+ 
Sbjct: 443 FLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLS 502

Query: 567 VPPTEVDPELPDI----KRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAG 622
           V   EV+  +PD+        Y+FSDGIGKI+ D A       K+  +     + IRY G
Sbjct: 503 VSRHEVEV-IPDVVCSLHGTNYIFSDGIGKISADFA-------KMRPSVYSIFFSIRYGG 554

Query: 623 CKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVP 682
            KGVVA  P     +++SLR SM K++S++  L++  W+++QP +LNRQ++TLLSTL V 
Sbjct: 555 YKGVVAVDPY--SSMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVK 612

Query: 683 DEMFWSMQDSMLSKLNQMLVDSDVAFEVL-TAACAEQGNTAAIMLSAGFNPQTEPHLRGM 741
           D++F   Q+  + +L+ +L DS  A E L   +  E  N    ML+ G+ P  EP L  M
Sbjct: 613 DDVFEQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMM 672

Query: 742 LTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNC---FSKH 798
           L   RA++L  LR ++RIF+   +W      E   LE GQ F+Q    F G     F + 
Sbjct: 673 LQTFRASKLLDLRTRSRIFI--AKWDAWLNPE--PLEYGQVFVQ----FTGTGRRQFYEE 724

Query: 799 GSRFAETKKLQ---VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
              F ++        ++G VV+AKNPCLHPGDIR+L AVD P LHH+
Sbjct: 725 SHPFNDSGSTNCNFTLEGNVVVAKNPCLHPGDIRVLRAVDVPALHHM 771



 Score =  136 bits (342), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/265 (32%), Positives = 136/265 (51%), Gaps = 18/265 (6%)

Query: 907  DIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTM 966
            ++ E+F  ++VN +LG I NAHVV AD     A+   C  LA+L + AV FPKTG    +
Sbjct: 772  EVGEYFTNYIVNGSLGIIANAHVVFADREPAMAMSAPCKQLAQLFSIAVAFPKTGVPAGI 831

Query: 967  PAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTD 1026
            P+ L+P  YPDFM K    +Y S K++G+L+R+ KD   +  S+++   ++     Y  D
Sbjct: 832  PSQLRPTDYPDFMEKPDKPTYHSEKVIGKLFRKVKDKTPQATSIAT-FTMDVARKSYAGD 890

Query: 1027 LEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKE 1086
            + V    D+  +A+  K  YD +L  L++ Y +  E E+++G +    K   R++    E
Sbjct: 891  MIVNGFEDYTDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGVMKASKTFDRRKD--AE 948

Query: 1087 RLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQ 1146
             +  +  +LRKE R  F+K     ++L+          KASAWY VTYH  +        
Sbjct: 949  AIGVAVRSLRKEARTWFKKRSDIDDMLA----------KASAWYHVTYHHTYWG-----L 993

Query: 1147 EQDSARSVVLLSFAWIANDYLARIK 1171
              +  R    +SF W   D L +IK
Sbjct: 994  YNEGLRRDHFISFPWCVYDQLIQIK 1018


>gi|119196681|ref|XP_001248944.1| hypothetical protein CIMG_02715 [Coccidioides immitis RS]
          Length = 1155

 Score =  325 bits (833), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 242/749 (32%), Positives = 355/749 (47%), Gaps = 103/749 (13%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V+V R  +TP+  Y   P +E  NRVLR+Y D  + FLRV F+DE               
Sbjct: 414  VKVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGD------------ 461

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF-----S 525
            P+  D      S      +R + +L  G  + G  FSFL FS S LR  + WF      S
Sbjct: 462  PVYFD---PQASLHNIFHERFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWFVAPFTTS 518

Query: 526  EDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGY 584
               +     I + +G F+   + AK AAR+GQ FS T  ++ +P   V    PD+KRNG 
Sbjct: 519  SGERFDAQSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAIPEDAVFLNEPDMKRNGR 578

Query: 585  VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
            VFSDG+G  +P L  ++  +  L     P  +QIR+AG KG+V+    +  G ++ LRES
Sbjct: 579  VFSDGVGTFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSL-DTRLKGEQLRLRES 637

Query: 645  MNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSML-------- 694
            M KF +     +E+C S  R  P +LN QII +L  L VP   F  +Q   +        
Sbjct: 638  MVKFSARRAFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDEIERLLSVGK 697

Query: 695  --SKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWG 752
              SK +Q L +S +A EV      E      I+   GF+   +P LR ++      ++  
Sbjct: 698  SASKTSQFLEESSIAKEVRVPWLIE------ILHGLGFHHDQDPFLRSVVQLAIFFKMRD 751

Query: 753  LREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIK 812
            L+ +ARI VP    L G +DE G L  G+ F      FL            E  +  +++
Sbjct: 752  LKYRARIRVPEAVTLYGIMDETGYLNEGEIFCT----FLNE----------EGGREILVR 797

Query: 813  GFVVIAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDL 869
              V++ + P LHPGD++  +AVD PE   L  L++C++F Q G R   +  SG DLDGDL
Sbjct: 798  DQVIVTRAPALHPGDVQYAKAVDVPENSPLRSLHNCVIFSQHGFRDLPSMLSGGDLDGDL 857

Query: 870  YFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHV 929
            Y V +DE L+PP   ++PP  Y   E K L R V + DII+FF   M  + LG I   H 
Sbjct: 858  YNVIYDERLMPPC--TYPPANYPKVEEKLLDREVVRDDIIDFFVTFMQQDQLGRIATIHQ 915

Query: 930  VHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK-PKLYPDFMG-------- 980
              AD    G LD++C+LLAEL + AVDF K+G  V +    K P+ YPDFM         
Sbjct: 916  AIADQRPAGTLDQDCLLLAELHSVAVDFSKSGIPVDLTRIPKRPRYYPDFMAPSPRIKIA 975

Query: 981  -------KEAY---------------QSYKSNKILGRLYRQ-SKDAYDEDISVSSEVD-- 1015
                   +E Y               + YKSN+ILG +YR  ++  +   +  +S++   
Sbjct: 976  DSIEVVEEEQYLAEDEDDDEDERPQRRYYKSNRILGVMYRNINEQEFLNAVRNASKLRRD 1035

Query: 1016 ----INPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVN------REEEL 1065
                +N +  +  ++ E  +    + D    K  Y+ +L  +++QY          E E+
Sbjct: 1036 DNTLLNAIWDYVASETEGFQWDHLVEDGRKVKDIYEDKLREIMQQYSKTPWKSSLTEVEV 1095

Query: 1066 VTGHIWSMPKYNSRKQGELKERLKHSYSA 1094
            V G I       SR+  E  + ++    A
Sbjct: 1096 VMGSILGQNSKQSRRDKEASQSMREGTPA 1124


>gi|118386404|ref|XP_001026321.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila]
 gi|89308088|gb|EAS06076.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila
            SB210]
          Length = 1439

 Score =  324 bits (831), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 246/826 (29%), Positives = 388/826 (46%), Gaps = 140/826 (16%)

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
            ++  RR+ ITP+       E+ELSNRVLR ++D  D F+R TF D+ L+  NA  + Y  
Sbjct: 549  VIATRRVSITPSGLIYNLKELELSNRVLRIFQDSTDSFIRGTFQDDSLE--NAKHMKY-- 604

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGK 529
                       F QK + FK           +   +F    +S+SQLR+ S+WFF E   
Sbjct: 605  -------VSRYFRQKLKSFK-----------VLNWEFINFGWSASQLRNSSSWFFHETEV 646

Query: 530  TSVLDIKKWMGRFTDKNI-AKCAARMGQCFSST--YATVEVPPTEVDPELP------DIK 580
                D+   +G F+  N  AK +AR+GQCFSS+  Y   E P  E   ++       ++ 
Sbjct: 647  LKKQDVITRIGDFSGINPPAKKSARIGQCFSSSTPYILKERPNIEFIDDITTPSAVQEVD 706

Query: 581  RNGY---------VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP 631
             NG          VF+DGIG I+ DL  +++  L        CA Q+RY G KGV+    
Sbjct: 707  ANGNICYFRQKKKVFTDGIGTISQDLIRKISDHLNAFF---MCAIQVRYGGAKGVLTIDY 763

Query: 632  AKGDGIRMSLRESMNKF----QSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFW 687
                   + LRESM K+    +     ++I    +++ G+LNRQ+I LL +L + +E F 
Sbjct: 764  KSDKKNTIQLRESMIKYKITDEQDELIIDILDRNKYRFGYLNRQVIILLRSLGIENEQFI 823

Query: 688  SMQDSMLSKLNQMLVDSDVAFEVLTAACAEQG-------NTAAIMLSAGFNPQTEPHLRG 740
              Q   + +LN+  +     F +     ++ G       +    M ++  +   +   +G
Sbjct: 824  QAQQEYIEELNKSALKDASIFTLFNTDYSKDGTRLFPITHLLRSMQTSRIDMAQDIFCKG 883

Query: 741  MLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGS 800
            ++  ++    + LR+K+ IF+     LMG +DE  VLE  + F  +S+    + F     
Sbjct: 884  VIHTLKKRGFYILRKKSNIFLKKSARLMGVIDEYNVLEQDEVFAYISQDSEKSFFQ---- 939

Query: 801  RFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHH------------LYDCLVF 848
                      ++G V++ KNPCLHPGDIR L+AV    +              L + L+F
Sbjct: 940  ----------VEGDVIVVKNPCLHPGDIRKLKAVTLETISQRLGEGKINPFKKLRNILIF 989

Query: 849  PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNA---AEAKTLTR---- 901
            PQKG  P T++ +GSDLDGD YF+ WD+  IP  +K   P  Y+    ++ K +++    
Sbjct: 990  PQKGKEPITSQIAGSDLDGDCYFICWDQRFIPLEQKE--PFNYDEDDNSQKKQISQEQYD 1047

Query: 902  ---------------PV-----DQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALD 941
                           PV     D   +++FF   + NENLG I N+H+V AD S   A D
Sbjct: 1048 IEISKKPNTQFKTKNPVREVIDDNEQMLDFFIDFINNENLGKIDNSHLVFADKSPLYAED 1107

Query: 942  ENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSK 1001
              C+ LA L A AVD+ KTG    +P +L  K YPDFM K+   SY+S  ILG LYRQ K
Sbjct: 1108 PKCLKLASLHAQAVDYAKTGISPQLPKNLAIKEYPDFMEKDDKPSYQSQSILGILYRQVK 1167

Query: 1002 DAYDEDISVSSEVD-----------------INPVDIHYDTDLEVPESVDFIADAWNQKC 1044
            D Y++      E D                 +N +    +    + + +DF  +A NQ  
Sbjct: 1168 DQYEKHCKNDIEGDRSQTFIDNNLIFNPPTFVNEIVDEQENKTYLEQEIDFAIEANNQ-- 1225

Query: 1045 SYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGE---LKERLKHSYSALRKEFRQ 1101
             ++ ++N L + +    E E+ TG+   + K   +K+     +++R+  +  A++  F  
Sbjct: 1226 -WNIEINNLKQFFGAQNEFEIYTGNFSKLIKVERKKKMSAEIVQQRILSTLLAIKNRFEL 1284

Query: 1102 VFEK-MDSDCE-LLSEDEKNALFERK----ASAWYQVTY--HPEWV 1139
            +F K +D D +    E  +   + +K    A+ WY + Y   PE +
Sbjct: 1285 LFFKNLDEDRDRFYDETNRKKYYSKKCKIRATLWYIICYLRKPEHI 1330


>gi|156379597|ref|XP_001631543.1| predicted protein [Nematostella vectensis]
 gi|156218585|gb|EDO39480.1| predicted protein [Nematostella vectensis]
          Length = 523

 Score =  324 bits (830), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 200/533 (37%), Positives = 300/533 (56%), Gaps = 18/533 (3%)

Query: 535  IKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVD-PELPDIK--RNGYVFSDGI 590
            I++WMG F+  + +    +RMGQCFS++  TV +    ++  E  DI+     Y F+DGI
Sbjct: 1    IRRWMGDFSSIRCVGTYVSRMGQCFSTSLDTVGITVDGIECLEKDDIQTEEKSYTFTDGI 60

Query: 591  GKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQS 650
            G I+  LA +V  K+  D  P   A+QIRYAGCKGV+A   + G+  ++  R SM KFQS
Sbjct: 61   GGISSQLARKVTIKIGKDFIP--SAFQIRYAGCKGVLAVDKSLGEK-QLFCRPSMRKFQS 117

Query: 651  HHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEV 710
             H  LE+   +R Q  +LN Q+I LLS L + D++F S+ +  L  L   L+D  +A   
Sbjct: 118  SHRRLEVLQTSRPQAVYLNHQVIMLLSNLGISDDVFMSLLEKTLDNLGGTLLDERLAMRQ 177

Query: 711  LTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVP--AGRWLM 768
            L++A  ++G +   +  AG +   EP  R +   +   +L  L  KAR+ +P  + R +M
Sbjct: 178  LSSA-VKRGISYRDLFDAGVHLTVEPFFRSLNAAVYRDRLMQLLMKARMQLPLESARLMM 236

Query: 769  GCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDI 828
            G +DE GVLE GQ F+Q S     +   +    F  + K +V+KG VV+ +NPCLHPGD+
Sbjct: 237  GVVDETGVLEYGQVFVQYSA---ASNDPRSDKEFELSDK-RVLKGPVVVTRNPCLHPGDV 292

Query: 829  RILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS-WP 887
            R L A+D P+L HL DC+VFP+ G RPH +E +G DLDGDLYFV W + LIP  + S + 
Sbjct: 293  RRLVAIDTPKLRHLVDCVVFPKTGQRPHPSEMAGGDLDGDLYFVCWYKPLIPSQEISLYD 352

Query: 888  PMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILL 947
            PM+Y A   +     +   D+ ++   ++  + LG I N+H   AD  + G   E C+ L
Sbjct: 353  PMDYKAPPKREDRTEITSADMTQYIVDYIRMDILGVIDNSHKALADKLKKGVQSEECLFL 412

Query: 948  AELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDED 1007
            AE  + AVD PKTG+   +     PK YPDFM K    +Y+S K+LG+LYR  + ++ + 
Sbjct: 413  AEAHSYAVDAPKTGQWPDLNGLKLPKSYPDFMMKTDKPTYRSKKLLGKLYRSCR-SFKKL 471

Query: 1008 ISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVN 1060
               S+  +I    +  D +L V     F+ +A N    Y  +L+ ++  Y +N
Sbjct: 472  AEDSAPKEITKPCL--DPNLLVAGYRRFLDEAKNVYQEYCLRLDHIMGIYGIN 522


>gi|111610628|gb|ABH11712.1| RNA-dependent RNA polymerase [Tetrahymena thermophila]
          Length = 1434

 Score =  323 bits (829), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 246/826 (29%), Positives = 388/826 (46%), Gaps = 140/826 (16%)

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
            ++  RR+ ITP+       E+ELSNRVLR ++D  D F+R TF D+ L+  NA  + Y  
Sbjct: 544  VIATRRVSITPSGLIYNLKELELSNRVLRIFQDSTDSFIRGTFQDDSLE--NAKHMKY-- 599

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGK 529
                       F QK + FK           +   +F    +S+SQLR+ S+WFF E   
Sbjct: 600  -------VSRYFRQKLKSFK-----------VLNWEFINFGWSASQLRNSSSWFFHETEV 641

Query: 530  TSVLDIKKWMGRFTDKNI-AKCAARMGQCFSST--YATVEVPPTEVDPELP------DIK 580
                D+   +G F+  N  AK +AR+GQCFSS+  Y   E P  E   ++       ++ 
Sbjct: 642  LKKQDVITRIGDFSGINPPAKKSARIGQCFSSSTPYILKERPNIEFIDDITTPSAVQEVD 701

Query: 581  RNGY---------VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP 631
             NG          VF+DGIG I+ DL  +++  L        CA Q+RY G KGV+    
Sbjct: 702  ANGNICYFRQKKKVFTDGIGTISQDLIRKISDHLNAFF---MCAIQVRYGGAKGVLTIDY 758

Query: 632  AKGDGIRMSLRESMNKF----QSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFW 687
                   + LRESM K+    +     ++I    +++ G+LNRQ+I LL +L + +E F 
Sbjct: 759  KSDKKNTIQLRESMIKYKITDEQDELIIDILDRNKYRFGYLNRQVIILLRSLGIENEQFI 818

Query: 688  SMQDSMLSKLNQMLVDSDVAFEVLTAACAEQG-------NTAAIMLSAGFNPQTEPHLRG 740
              Q   + +LN+  +     F +     ++ G       +    M ++  +   +   +G
Sbjct: 819  QAQQEYIEELNKSALKDASIFTLFNTDYSKDGTRLFPITHLLRSMQTSRIDMAQDIFCKG 878

Query: 741  MLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGS 800
            ++  ++    + LR+K+ IF+     LMG +DE  VLE  + F  +S+    + F     
Sbjct: 879  VIHTLKKRGFYILRKKSNIFLKKSARLMGVIDEYNVLEQDEVFAYISQDSEKSFFQ---- 934

Query: 801  RFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHH------------LYDCLVF 848
                      ++G V++ KNPCLHPGDIR L+AV    +              L + L+F
Sbjct: 935  ----------VEGDVIVVKNPCLHPGDIRKLKAVTLETISQRLGEGKINPFKKLRNILIF 984

Query: 849  PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNA---AEAKTLTR---- 901
            PQKG  P T++ +GSDLDGD YF+ WD+  IP  +K   P  Y+    ++ K +++    
Sbjct: 985  PQKGKEPITSQIAGSDLDGDCYFICWDQRFIPLEQKE--PFNYDEDDNSQKKQISQEQYD 1042

Query: 902  ---------------PV-----DQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALD 941
                           PV     D   +++FF   + NENLG I N+H+V AD S   A D
Sbjct: 1043 IEISKKPNTQFKTKNPVREVIDDNEQMLDFFIDFINNENLGKIDNSHLVFADKSPLYAED 1102

Query: 942  ENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSK 1001
              C+ LA L A AVD+ KTG    +P +L  K YPDFM K+   SY+S  ILG LYRQ K
Sbjct: 1103 PKCLKLASLHAQAVDYAKTGISPQLPKNLAIKEYPDFMEKDDKPSYQSQSILGILYRQVK 1162

Query: 1002 DAYDEDISVSSEVD-----------------INPVDIHYDTDLEVPESVDFIADAWNQKC 1044
            D Y++      E D                 +N +    +    + + +DF  +A NQ  
Sbjct: 1163 DQYEKHCKNDIEGDRSQTFIDNNLIFNPPTFVNEIVDEQENKTYLEQEIDFAIEANNQ-- 1220

Query: 1045 SYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGE---LKERLKHSYSALRKEFRQ 1101
             ++ ++N L + +    E E+ TG+   + K   +K+     +++R+  +  A++  F  
Sbjct: 1221 -WNIEINNLKQFFGAQNEFEIYTGNFSKLIKVERKKKMSAEIVQQRILSTLLAIKNRFEL 1279

Query: 1102 VFEK-MDSDCE-LLSEDEKNALFERK----ASAWYQVTY--HPEWV 1139
            +F K +D D +    E  +   + +K    A+ WY + Y   PE +
Sbjct: 1280 LFFKNLDEDRDRFYDETNRKKYYSKKCKIRATLWYIICYLRKPEHI 1325


>gi|403346586|gb|EJY72692.1| Rna-dependent RNA polymerase [Oxytricha trifallax]
          Length = 1470

 Score =  320 bits (821), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 216/671 (32%), Positives = 343/671 (51%), Gaps = 88/671 (13%)

Query: 387  LKLVQEWLLKDPEL---YKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDL 443
            +++ Q++L KDP++   +K   +  + +  RRL ITPT  Y  P   + +NRV+R+Y+D 
Sbjct: 531  IQVFQKYL-KDPDILHDFKRSTKNVNFLRQRRLFITPTLDYYQPAYEDETNRVIRQYRDH 589

Query: 444  ADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCG 503
              RF+RV+F++E L+        Y+ +            Q   +   +  +L  G  L  
Sbjct: 590  LSRFVRVSFVNEYLEK------GYYFS-----------DQMNWLLGYLHHVLVNGIQLGN 632

Query: 504  RKFSFLAFSSSQLRDCSAWFFSE--------DGKTSVLDIKKWMGRFT-DKNIAKCAARM 554
                FL++S+SQ+++ S W   E        D   +   I + MG F+ +KN+ K  AR 
Sbjct: 633  YVLKFLSYSNSQIKNHSCWMLVESLVPNKDFDFPLNENIIMRSMGDFSQEKNMLKRYARR 692

Query: 555  GQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPC 614
            GQCFS+T   +++  +EV   LPD+KRNG++F+DG G I+P+LA  +A++     +    
Sbjct: 693  GQCFSTTKFILQLDKSEVTYNLPDVKRNGFIFTDGCGYISPELAQLIAEQFSFKRS---S 749

Query: 615  AYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIIT 674
            A+QIR+ G KGV+   P + +G ++ LR+S  KFQS+   L +     +  GFLNRQII 
Sbjct: 750  AFQIRFGGTKGVLMLNP-RLEGRQIQLRDSQIKFQSNDLGLNVVRCGTYSQGFLNRQIII 808

Query: 675  LLSTLNVPDEMFWSMQD------SMLSKLNQMLVDSDVAFEVL----TAACAEQGNTAAI 724
            L++ L VP+ +F  +Q        +    N ++  +  A +        + + Q  T  I
Sbjct: 809  LMNCLGVPESVFLELQRKAKEYAQVQEIYNNLIKKTSKAIKAFKLSQNKSKSLQQITKLI 868

Query: 725  MLS----------------AGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLM 768
             LS                 G+N   +P    +L  ++ +    L++KARI +P    L+
Sbjct: 869  NLSLGPSKWFEQSLKTALLCGYNIPNDPIFSSILYTMQLSSFMNLKKKARIIIPDSCVLL 928

Query: 769  GCLDELGVLEGGQCFIQVSE--------PFLGNC-FSKHGSRFAETKKLQVIKGFVVIAK 819
            G +DE G+LE  + FIQV +        P+L +   +       ++K LQ+ +  V++ +
Sbjct: 929  GIVDEFGILEEDEVFIQVKQDNYSLKKKPWLWDINLNNQEELEKDSKPLQICQD-VIVTR 987

Query: 820  NPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
            NPC HPGDIR+L+AV+ PEL HL++ +VF  KG+RP  N+ +G DLDGD+YFV WD  ++
Sbjct: 988  NPCTHPGDIRLLKAVNKPELSHLFNVVVFSSKGERPQCNKMAGGDLDGDVYFVCWDSLIL 1047

Query: 880  PPSKKSWPPMEYNAAEAKTLTR-------PVDQRDIIEFFAKHMVNENLGTICNAHVVHA 932
               KK       N  E  T  +       P+D   I ++F  ++  + LG + N H+   
Sbjct: 1048 SHIKKE------NIQEPATYVKPTLISEQPIDSEHIADYFIFYLQRDVLGKLANMHLALC 1101

Query: 933  DHSEY-GALDENCILLAELAATAVDFPKTGKIVTMP--AHLKPKL--YPDFMGKEAYQSY 987
            D     G L E C  L+ L + AVDF K G+ V      HL+  L  +PDF  K   +  
Sbjct: 1102 DQIGVDGPLKEECQELSALQSIAVDFAKHGESVDKKNFEHLQKMLDNWPDFFEKSNQKMR 1161

Query: 988  KSNKILGRLYR 998
             S  +LG LYR
Sbjct: 1162 VSEGVLGMLYR 1172


>gi|213407476|ref|XP_002174509.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces japonicus
            yFS275]
 gi|212002556|gb|EEB08216.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces japonicus
            yFS275]
          Length = 1213

 Score =  320 bits (819), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 269/944 (28%), Positives = 439/944 (46%), Gaps = 86/944 (9%)

Query: 264  IGRCNSYRISISSRHRGKLSKVITYLGE-RRVQVDSLSRPITIREEPDFEVPMSDPFFCI 322
            IGRCN    +        ++ +   L +  ++ V S    I +   PD+         C 
Sbjct: 314  IGRCNHLLFTSYYGQDNTMNSLAFLLRDLEKLSVRSTLSEIILVPSPDYRE------ICS 367

Query: 323  HYEEG-ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVF 381
              ++  +S + ++ + A + + +I++  L  +   +L   + E   + L+  ++ K  VF
Sbjct: 368  WLQKTKLSNQTLYWLEACVSQFLISEFDLP-TLIPILESVTEEQARSFLESTFARK--VF 424

Query: 382  DACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYK 441
             +   L+LVQ     +     G K    +  V+++ ITPT    +   +E  NRV+R + 
Sbjct: 425  VSKPSLELVQ-----NQSSASGKKFTSGLNSVKKVCITPTTVKVMDNSLEAGNRVIRHFS 479

Query: 442  DLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTR-VFKRVRSILSGGFY 500
               DRFLR+   +E  +               R I  N  + K   V+ RV  ++S G  
Sbjct: 480  QYNDRFLRIQITEENTK---------------RKIRSNPDALKQESVYARVYQLMSHGII 524

Query: 501  LCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFS 559
            +    F FLAF +SQLR+  A+FF+     S   I+ WMG F++ +++AK AARMGQCFS
Sbjct: 525  IGKTHFEFLAFGNSQLREHGAYFFASGEDESADSIRNWMGDFSNNESVAKYAARMGQCFS 584

Query: 560  STYATVEVPPTEVDPE-LPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQI 618
            +T    ++   +V  E   DI RN   F+DG+G  +  +    A ++  +    P A Q 
Sbjct: 585  TTK---DLKRFQVKVEKRNDIIRNDSCFTDGVGMASLSVMKRTASEMD-NEEMFPSAVQF 640

Query: 619  RYAGCKGVVACWPAK----GDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIIT 674
            R  G KGV++  P        G  +  R+S  KF+S+ T LE+   +RF    LN Q+IT
Sbjct: 641  RMGGYKGVLSLAPPTLLEYHKGNLVFTRDSQEKFKSNFTVLEVIKVSRFSHAHLNMQLIT 700

Query: 675  LLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTA--AIMLSAGFNP 732
            LL  L VP  +F  +  + L +L   L D   A  +L     E  +T   A +++ GF  
Sbjct: 701  LLEGLGVPTSLFVDLAKNELKELTISLKDPRRAVTLLRNHVDEYRSTLILADLIACGFMQ 760

Query: 733  QTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG---------QCF 783
            + +   + ++       +  ++EK R+ V  G +LMG  DE G L+G          + F
Sbjct: 761  RNDSFTKNLINLYFEWVVRTIKEKQRLRVKEGAFLMGVADETGTLKGHYNDSVLPIPEVF 820

Query: 784  IQVSEPFLGNCFSKHGSRFAETK-KLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
            IQ+++P      SK+       K K  +I G  V+ +NP LHPGD+R+  AV   EL HL
Sbjct: 821  IQITDP------SKNADATVTGKIKTTIIMGLCVVVRNPALHPGDVRVCRAVRCNELLHL 874

Query: 843  YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEA----KT 898
             + +VFP  GD   T   +G DLDGD Y V WD N + P   ++PP   NAA+     K 
Sbjct: 875  KNVIVFPTTGDLSVTEMCAGGDLDGDEYTVIWDPNFL-PKIVNYPPYIDNAAKRILTFKE 933

Query: 899  LTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHAD---HSEYGALDENCILLAELAATAV 955
               P++   I  FF +++  E+LG I N+    A    ++  G     C+ L+ L +TAV
Sbjct: 934  GVPPIES--IKAFFVRYIKYESLGLISNSWKAWAHDRVNNPDGIFGSICLKLSALHSTAV 991

Query: 956  DFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVD 1015
            D+PK+G    MP   +PK YPDFM KE ++S+ +   +G +YR +     +    +    
Sbjct: 992  DYPKSGVAAIMPQEYRPKAYPDFMEKE-FRSFPAMTAVGEIYRYASAFQSQYFKKAYSSK 1050

Query: 1016 INPVDIHYDTDLEVPE-SVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGH-IWSM 1073
            +N     YD  +++P     +I  A   K  YD  L  ++  + +  E E+ T   + + 
Sbjct: 1051 LNN---DYDETMKLPPYKQQYIEIAKKSKEQYDNDLRSVMTHFDIKTEYEIFTSFLLLNK 1107

Query: 1074 PKYNSRKQGELKERLKHSYSALRKEFRQVFEKM----DSDCELLSEDEKNALFERKASAW 1129
             K     +  L+E +   +SAL+K   + +  +     S  + +S+ E     +   +A 
Sbjct: 1108 DKETIINEYALREEIAFQFSALKKHHTENYFALCGLAPSSVKDMSKQEYEQRIDSAVAAA 1167

Query: 1130 YQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIR 1173
            Y V +  +    +      +    +VL SF +I +  L RI  R
Sbjct: 1168 YDVMHEEKIAAIA------EGTDDLVLTSFPYIFHKVLCRIARR 1205


>gi|346977552|gb|EGY21004.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
          Length = 1444

 Score =  317 bits (811), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 250/869 (28%), Positives = 399/869 (45%), Gaps = 175/869 (20%)

Query: 330  FEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKL 389
            F + + +   + +GI+ +++LS  F D LRG  ++            KW +     R K 
Sbjct: 412  FAVQYQLEVCISRGILCEYKLSQEFLDRLRGLQQD----------RAKWILEYFADRGKA 461

Query: 390  VQEWL--LKDPE---LYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLA 444
            V++ +   +  E    Y  P        VR++V+TPT  Y   P VE SNRV+RKY+ ++
Sbjct: 462  VEQPMDIFESHEANCYYPNPVVPHYCAIVRKVVVTPTTIYLSSPGVEASNRVIRKYQHVS 521

Query: 445  DRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGR 504
            DRFLRV F DE         L+         + L+ +     VFKRV   +  G  +  R
Sbjct: 522  DRFLRVQFTDE---------LTRGRISTRAKMELDHY-----VFKRVYLTMINGIRIGDR 567

Query: 505  KFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNI-AKCAARMGQCFSSTYA 563
             + FLAF +SQ+R+C A+FF E       ++++WMG F   +I AK AAR+GQCFS+T  
Sbjct: 568  HYKFLAFGNSQIRECGAYFFCETAHLKCTEMRQWMGNFNHIHIVAKFAARLGQCFSTTRE 627

Query: 564  --TVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYA 621
              ++  P  ++   +PDI+RNG+ F+DG+GKI+  LA  V +++ L+    P A+Q R  
Sbjct: 628  IRSIRAPNIQI---IPDIERNGHCFTDGVGKISSFLASMVLEEMGLETVETPSAFQFRMG 684

Query: 622  GCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNV 681
            GCKGV+A WP +  G+ + +R+S  KF++    LEI    RF    LNRQ IT+L++L +
Sbjct: 685  GCKGVLAVWP-EAKGMYVHIRKSQEKFKATFNGLEIIRCARFSVATLNRQTITILTSLGI 743

Query: 682  PDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGM 741
              E+F  +    L    + + D   A  +L     E   + A              LR +
Sbjct: 744  KSEVFMDLLQRQLHGYEKAMNDQGAAAVLLGRHIDENHTSLA--------------LRDL 789

Query: 742  LTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSR 801
            +        WG                                 V EPF+          
Sbjct: 790  IN-------WGFMRH----------------------------DVQEPFVLTI------- 807

Query: 802  FAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEAS 861
                  LQ+ +G  ++ +NP LHPGD+R++EAVD P+L H+ + +VFP  GD    +  S
Sbjct: 808  ------LQLWRGVCIVGRNPSLHPGDVRVVEAVDVPQLRHMKNVVVFPSTGDVDVPSMLS 861

Query: 862  GSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENL 921
            G DLDGD +FV WD NLIPP   ++ PM+  A + K + R V+ +D+             
Sbjct: 862  GGDLDGDDFFVIWDPNLIPPV-WNFRPMDNVAPQPKVVDRDVNAKDL------------- 907

Query: 922  GTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGK 981
                                   + LA+L + AVD+ K+G    +   L+ + +P FMG+
Sbjct: 908  ----------------------SLQLAKLHSKAVDYVKSGDPAELGRELRARRWPHFMGE 945

Query: 982  EAYQS--YKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLE-------VPES 1032
               ++  Y S   LG++Y + +D           V  NP+   Y+   +        P  
Sbjct: 946  RRNKNSLYHSYTALGQIYDRVQD-----------VPFNPL---YEKKFDRRILSRFAPID 991

Query: 1033 VDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNS---------RKQGE 1083
               +  A   K +YD  +  L+ Q +V+ E E+ TG   S P+  +         R  G 
Sbjct: 992  NAVLKQARRLKSTYDTAMRRLMAQREVSTEFEIWTGFPLSRPRVGNAYKHSEDIGRDAGL 1051

Query: 1084 LKERLKHSYSAL--RKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKK 1141
            LK+  +    AL     + +V   + +  ++ +E+   AL  R+ +  + V   PE    
Sbjct: 1052 LKQSFRDEVHALVGGSGYDKVAPFVAAMYQVTAEEVSIALHRRREA--HSVAGDPE---- 1105

Query: 1142 SLDLQEQDSARSVVLLSFAWIANDYLARI 1170
            +L  +++D  + + L++F WI +  L RI
Sbjct: 1106 ALPGRKRD-MKGMPLITFPWIYHWVLGRI 1133


>gi|299470095|emb|CBN78124.1| RNA-dependent RNA polymerase 1 [Ectocarpus siliculosus]
          Length = 1102

 Score =  317 bits (811), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 278/931 (29%), Positives = 417/931 (44%), Gaps = 155/931 (16%)

Query: 254  RTTDFTPSGAIGRCNSYRISIS-----SRHRGKLSK---VITYLGERRVQVDSLSRPITI 305
            R  + +P+ A GRC  YRI +S        R +L +         E R + D L  P+ +
Sbjct: 101  RVGNMSPNVAFGRCLVYRIDVSDLLEDKSERARLFQELFAFRLCTEPRPRQDHLLSPVRV 160

Query: 306  REEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREV 365
                  + P++       Y   + + + FL+  +     I+   +++    LL     E 
Sbjct: 161  HTYASGQ-PLNGWDNLPEYSR-LPYSVKFLIECLTSSLKIDAFGVNEEAVSLLAMAGEER 218

Query: 366  NVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGP--------KQIDDIVEVRRLV 417
               AL+          +     +++Q WL +    Y G         K+I +++ V R  
Sbjct: 219  ACLALRA-------RLEDTPSQEILQ-WL-EGYGPYNGAVYGVGEYGKEIGNVM-VPRAS 268

Query: 418  ITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI---VR 474
            +TP +  C PPE E+SN V R++ + +DRFL V F+DE +  +    LS  +AP      
Sbjct: 269  VTPLRVVCQPPEQEMSNGVTRRFAEHSDRFLGVNFVDENMGRLQ---LSPLLAPSDCWSI 325

Query: 475  DITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLD 534
             +    F Q+ + F +V   L      C      +    SQLR  + +F++E G+   + 
Sbjct: 326  GLACTPFGQRHQTFLKVHPAL---LVSCVVLSPPVRPRKSQLRGHACFFYAEGGEVDQIS 382

Query: 535  -------IKKWMGRFTDKNI-AKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVF 586
                   +  WMG  +  ++  K AAR+GQ  SST +TVEVPP  +   +PD K   Y F
Sbjct: 383  ESGSEPAVFHWMGDMSGIDVVGKHAARLGQSLSSTTSTVEVPPA-LKKLVPDKKAGPYEF 441

Query: 587  SDGIGKITPDLAMEVAQKLKLDVN-PPPCAYQIRYAGCKGVVACWP-------AKGDGIR 638
            +DG G ++  LA EVA  L   V+ PPP A+QIR  GCKG++A WP       +   G +
Sbjct: 442  TDGCGMMSEGLAREVADVLGHSVSQPPPSAFQIRMGGCKGMLAVWPDSVMRSVSGRGGYK 501

Query: 639  MSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN 698
            + +R SM KF S   TLE+  + R  P +LNRQ ITLL TL VPD++      +M+S L+
Sbjct: 502  VLVRPSMQKFPSERNTLEVIQYARQLPCYLNRQFITLLGTLGVPDKVIEERYSAMVSTLD 561

Query: 699  QML-------VDSDVAFEVLTAACAEQGNT----------AAIMLSAGFNPQTEPHLRGM 741
            ++L        ++++A  V        G T          A  M+ AG N +TEP L+ +
Sbjct: 562  KVLRTMLSDPAEAEMAL-VRYYNITSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSV 620

Query: 742  LTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSR 801
            L   R   +  LR + RIFVP    L+G +DE G L+ GQ    +    + +  +   S 
Sbjct: 621  LHATRDKAMIDLRHRTRIFVPDASCLLGIVDETGFLQPGQASDSLGCRSVNHYTANRAS- 679

Query: 802  FAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEAS 861
                                        I+   D         C   P K         S
Sbjct: 680  ----------------------------IMTNAD-----RFGQCTPEPSK--------MS 698

Query: 862  GSDLDGDLYFVTWDENLIPPSKK-------------SWPPMEYNAAE-----AKTLTRPV 903
            G DLDGDLY V WD++L+PP ++             ++P M Y   E     A +  + V
Sbjct: 699  GGDLDGDLYSVVWDQDLLPPEREGVAGVQGDSENGFNFPAMGYEPPEKPKTSASSSGKGV 758

Query: 904  DQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKI 963
            D ++I +FF K++ N+NLG I NAH+V AD S  GA  + C+ LA L + AVDFPK+G  
Sbjct: 759  DMKEIADFFLKYIQNDNLGKIANAHLVRADLSPLGARCDECLQLAALHSKAVDFPKSGVP 818

Query: 964  VTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYR----------QSKDAYDEDISVSSE 1013
               P  LK   YPDFM KE   +Y S K++GRL+R          Q +   DE      E
Sbjct: 819  AVFPDELKVDSYPDFMCKEDNMTYLSKKLIGRLFRDTPPAGAANPQRRQQQDERFLGGFE 878

Query: 1014 VDINPVDIHYDTDLEVPESVDFIADAWNQKCSYD--GQLN-GLLEQYKVNREEEL-VTGH 1069
            +D + +   Y+  LE  E   F      +    D  G+LN   L  +       L   G 
Sbjct: 879  LDQSLLAPGYEDFLEEAEVERFGGRMLKRTKLEDAQGRLNLEFLRMFMPMHARALDGRGS 938

Query: 1070 IWSMPKYNSRKQGELKERLKHSYSALRKEFR 1100
            +W +P+        L+E++K  +   R EFR
Sbjct: 939  VWVLPR------AYLREQIKAKF---RAEFR 960


>gi|301106324|ref|XP_002902245.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
 gi|262098865|gb|EEY56917.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
          Length = 2680

 Score =  316 bits (809), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 240/795 (30%), Positives = 367/795 (46%), Gaps = 84/795 (10%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            V ++++TP++    PP+   SNRV R +   ++ F+ V F D+ ++ ++           
Sbjct: 1101 VYKVIVTPSRIVYCPPDPAPSNRVFRHWG--SENFMYVYFRDDNMERLD----------- 1147

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYL----CGRKFSFLAFSSSQLRDCSAWFFSEDG 528
             R +T         + +R+R++L  G  +     G KF FL  S SQ+R+ SA F   D 
Sbjct: 1148 FRSVT---------ILERIRNVLKNGIEIPHVSGGLKFRFLGCSLSQVRNSSAIFTRLDH 1198

Query: 529  KTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFS 587
                  ++ W+G  +   + AK   R+GQ FSST  T EV  + +D  + DI+ + YVF+
Sbjct: 1199 HA----VRLWIGDLSLLTSPAKYLKRLGQAFSSTKDTFEVSRSVLDNPVDDIENDQYVFT 1254

Query: 588  DGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR----MSLRE 643
            DG G+I    A  + ++L+L   P   A+Q+R  G KGV+         I     + LR+
Sbjct: 1255 DGCGEIGLVGAESIVRELQLSYTP--SAFQVRLGGAKGVLVVSDLGNPDISREEAVVLRK 1312

Query: 644  SMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVD 703
            SM+KF S+HT LEI +       +L RQ + +L+ L + +++F  MQ+  LS L  ++  
Sbjct: 1313 SMSKFSSNHTMLEIVACAGKSEAYLTRQSVLILNDLGINEDVFMEMQEEFLSDLRSLIAS 1372

Query: 704  SDVAFEVLTAACAEQG--NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761
               A+  L A            ++         + +L  +   I   +L     +ARI +
Sbjct: 1373 DSGAYFGLKAVLPPSVIWRIDVLVRKLEVKILVDEYLSSLARTIYHYRLANTVMRARIPI 1432

Query: 762  PAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGF-VVIAKN 820
              GR LMG  D  G LE G+ F+Q S+                     ++ G  V + ++
Sbjct: 1433 AKGRTLMGVADFTGTLEYGEVFVQYSDT----------DEETGNDSYVLLDGIDVAVHRS 1482

Query: 821  PCLHPGDIRILEAVDH--PELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENL 878
            PC HPGDIR+L       P+L  L DC+VFP KG RPH +E +G DLDGD++ V WDE L
Sbjct: 1483 PCHHPGDIRVLRCRTDVPPQLRQLKDCIVFPSKGPRPHPDECTGGDLDGDMFVVIWDERL 1542

Query: 879  IPPSKKSWPPMEYN-------AAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVH 931
            IP   +   PM ++       +   +   +  D   +I+F+   + ++ LG   NAH+  
Sbjct: 1543 IPSRTQVHEPMAFDEDNGGDTSPRGEEYHQSTDDAGLIDFYIHSIQDDILGIASNAHLAL 1602

Query: 932  ADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNK 991
             D S  G+LD+N  +LA + +  VD  +  K + +  +L PK YPDFM  +   SY S K
Sbjct: 1603 CDSSNDGSLDDNAKILARICSKQVDSLRAEKDLEIVRNLAPKSYPDFMQNKEKPSYPSKK 1662

Query: 992  ILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLN 1051
            ILG++YR+ K  +  D +++  V   P+    D    V    D++  A      Y  +L 
Sbjct: 1663 ILGKMYRRCKAIF--DTTMTKSVSRMPI---RDDHFLVAGYTDYVEQANLLYRQYKLRLR 1717

Query: 1052 GLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCE 1111
             LL       E EL TG I               E+ K ++ AL+  FR  F   DSD  
Sbjct: 1718 ALLLMSGAQTEAELATGMIVEPQSEYKADYFRFGEQCKDAFYALQAGFRSQF---DSDTS 1774

Query: 1112 LLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
              +  E   L    ASA Y VT+              DS  +   LSF WI  D L  IK
Sbjct: 1775 TFAAGENLKL----ASACYFVTH-------------DDSDATTRCLSFPWIVIDLLTTIK 1817

Query: 1172 IRCREMANIDTSKPV 1186
                   +    KPV
Sbjct: 1818 TSNASKTHYKEWKPV 1832


>gi|170582151|ref|XP_001896001.1| RNA dependent RNA polymerase family protein [Brugia malayi]
 gi|158596891|gb|EDP35156.1| RNA dependent RNA polymerase family protein [Brugia malayi]
          Length = 1475

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 276/967 (28%), Positives = 442/967 (45%), Gaps = 176/967 (18%)

Query: 326  EGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVN-VAALKHIYSYKWPVFDAC 384
            + +SF + +L+ A++ +G +    + D     L    R +N +  +K+I     P+  A 
Sbjct: 390  KSLSFALEYLIAALLSRGAV----VKDQLLMTLEVLERLINMIDEMKNI----PPLISAF 441

Query: 385  KRLK---LVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYK 441
            +R++    V++ LL +     G    +    VR+ VITPT+   + PE+ + NRVLR++ 
Sbjct: 442  ERIQNSIFVKKELLAE---IHGRSADEGFQRVRKAVITPTRMLLVIPELLMGNRVLREFD 498

Query: 442  DLADRFLRVTFMDE-GLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFY 500
            +  D  LR+ F D+ G     +    Y I   V +  L                   G Y
Sbjct: 499  ESGDDALRIQFRDDDGAHLRRSRAGLYIIETTVHNSLLR------------------GVY 540

Query: 501  LCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSS 560
            +  R F +LA S+SQ+RD   +FF++     V  I+  +G+F   NI K  +RMGQCF+ 
Sbjct: 541  ISDRHFVYLASSNSQMRDNGCYFFNDGDDGKVKMIRDKLGKFDHTNIPKLMSRMGQCFTQ 600

Query: 561  TYATVEVPPTEVDPELPDIKRNG--------------YVFSDGIGKITPDLAMEVAQKLK 606
            +         E D  L   K N               ++FSDG+GK++ D A ++A  L 
Sbjct: 601  S--------KETDVTLKRRKYNKTHDVIGGKDSCGEPFIFSDGVGKLSEDFAEQIANDLG 652

Query: 607  LDVNPPPCAYQIRYAGCKGVVACWPA---------------------KGDGIRMSLRESM 645
            L    P C +Q RY G KGV++  PA                     K + + +  R S 
Sbjct: 653  LAKCVPSC-FQFRYRGLKGVLSVDPALRQRRLWAERNGLEDKHAKTAKVNDLDIIFRPSQ 711

Query: 646  NKFQS-HHTTLEICSWTRFQPGFLNRQIITLLSTL------NVPDEM---FWSMQDSMLS 695
            +KF +     +EI  ++     +LNR +I +L  +      +V   +      + D  L 
Sbjct: 712  DKFHAPRKEIIEIVKYSSPTSVYLNRPLINILDQVSDMQGFDVHSRIVNRIHGLLDRQLL 771

Query: 696  KLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLRE 755
            KL+  L+  D   E L A    + N   + ++ GF    EP   G+L       L     
Sbjct: 772  KLSDALMSEDRCRERL-AEFPRRINVQYLSVARGFTLTQEPFFHGLLIASVRFTLQKQLS 830

Query: 756  KARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKG 813
            K  I +PA  GR + G LDE G+L+ GQ F+Q    F  + F K   + A      ++KG
Sbjct: 831  KEHIQIPANLGRTMFGILDETGLLQYGQVFVQ----FTNDVFLKTPPKAAAKT---IVKG 883

Query: 814  FVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVT 873
            FV+I KNP +  GD+RI EAVD PEL HL D +VFPQ G RPHT+E +GSDLDGD Y V 
Sbjct: 884  FVLITKNPSIVAGDVRIFEAVDLPELRHLVDVVVFPQHGPRPHTDEMAGSDLDGDEYSVI 943

Query: 874  WDENLIPPSKKSWPPMEYNAAEAKTLTRPVD-------QRDIIEFFAKHMVNENLGTICN 926
            WD+ ++    +   PM+++      L RP D        R++  F+ ++++ +++G I N
Sbjct: 944  WDDQMLFSHNEE--PMDFSK-----LIRPPDILKEDEVVREMRRFYVEYVMQDSIGIIAN 996

Query: 927  AHVVHADHSEYGALDENCILLAELAATAVDFPKTGK----IV---------TMPAHLKPK 973
            A +V++D   +G   + C+ +AE  + +VDFPKTG+    +V          M    +P+
Sbjct: 997  AFLVNSD--TFGIASDVCMSIAEKHSQSVDFPKTGQPPKPLVKEWSNGPDGKMIPPERPE 1054

Query: 974  LYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVS------SEVDINPVDIHYDTDL 1027
             +PDFM K    SY S +++G+L+R+ +   D+ ++++      S+V ++P+       L
Sbjct: 1055 RWPDFMCKTHEPSYVSTRLVGQLFRRIR-LIDDVLTITRAHETQSKVTVDPL-------L 1106

Query: 1028 EVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKER 1087
            E      +  DA     +Y   +  L++ Y +  E +L +G    +    S + G+   +
Sbjct: 1107 EYSGWESYENDATLNLIAYSAHIRALMDNYGIEDECQLYSGCFCKVRNRISDRDGDDMSQ 1166

Query: 1088 LKHSYSALRK--------------EFRQVFEKMDSDCELLSEDEKNALF--------ERK 1125
               S+   RK              EF         D +L ++D     +        ++K
Sbjct: 1167 FNTSFIIERKLTNIFMCFRCNFFAEFGDFMSCTQQDDDLRNKDVIERRYCKYPTVEMKKK 1226

Query: 1126 ASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMA--NIDTS 1183
            ASA+Y V Y          + ++   R   LLSF WI  D LA IK     +   NI T 
Sbjct: 1227 ASAYYIVCYR--------KVMKEKGER---LLSFPWIVWDILADIKKENAVLTSQNISTI 1275

Query: 1184 KPVNYLA 1190
             P+  LA
Sbjct: 1276 DPLCELA 1282


>gi|241997884|ref|XP_002433585.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
 gi|215495344|gb|EEC04985.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
          Length = 528

 Score =  308 bits (789), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 194/544 (35%), Positives = 281/544 (51%), Gaps = 37/544 (6%)

Query: 535  IKKWMGRFTD-KNIAKCAARMGQCFSST---------YATVEV------PPTEVDPELPD 578
            I++ +G  +  +++ K  ARMGQ FS +         Y  VE       PP      L +
Sbjct: 1    IRQGIGDLSSIRSVPKLMARMGQAFSQSLGFVTVPRQYTAVEADVRCRAPPGASAAALAE 60

Query: 579  IKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR 638
              +  Y+FSDGIG+I+P L  +V + L+L+    PCA QIRY GCKG++   P    G R
Sbjct: 61   AAKRDYIFSDGIGRISPALMRKVYRSLELEDGEEPCAVQIRYGGCKGMLLVDPTMA-GRR 119

Query: 639  MSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN 698
            +  R SM KF S H  L +   ++ +  +LNR +IT+L    +  + F ++Q+ +L    
Sbjct: 120  IVFRTSMCKFPSDHEDLYVLKTSKPRVLYLNRPMITILEQSGIRAKAFLALQNRVLDSFI 179

Query: 699  QMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKAR 758
              ++D+  A +VL   CA +     +    G +   EP  RG++  +    L     KAR
Sbjct: 180  NSMLDAHEAAQVLCGYCALRLPYKELA-GVGVDLTVEPFFRGLIRAVNRKVLSEWLTKAR 238

Query: 759  IFVP--AGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVV 816
            I VP   GR + G LDE   LE GQ F+Q S             R+  T    ++KG V+
Sbjct: 239  ILVPPEKGRTMFGVLDETDTLEYGQVFVQYSNDMF---------RYKATDPATILKGDVI 289

Query: 817  IAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE 876
            + KNPC+HPGDIR L AVD P LHH+ DC+VFP KG+RPH +E SGSDLDGD Y V W E
Sbjct: 290  VTKNPCMHPGDIRRLTAVDVPRLHHVRDCIVFPAKGERPHPDEMSGSDLDGDEYSVLWYE 349

Query: 877  NLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSE 936
            +LI   + +  PM Y +   K    P++ +D+I+FF +++  + +G I NAH+V AD  +
Sbjct: 350  DLI--FRNNCSPMHYYSDPPKERKAPIEVQDMIDFFCQYIKGDKIGLIANAHLVWADMLD 407

Query: 937  YGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGK-EAYQSYKSNKILGR 995
             G     C  LA   A  +DF K G +       KP +YPDFM K +   +Y S K+LG+
Sbjct: 408  GGINSRRCRDLARKCAVNLDFAKRGDLKGFQNSEKPPMYPDFMEKLDTKNTYCSKKVLGQ 467

Query: 996  LYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLE 1055
            LYR  K      + +S+E      D   D  L +    +FI  A      Y  ++  LL+
Sbjct: 468  LYRNCK-----KVELSTECLEVVEDSLPDPRLLLDGREEFIESARTSYRRYAMKIRALLK 522

Query: 1056 QYKV 1059
             Y +
Sbjct: 523  SYGI 526


>gi|348680026|gb|EGZ19842.1| hypothetical protein PHYSODRAFT_558487 [Phytophthora sojae]
          Length = 2706

 Score =  308 bits (789), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 257/879 (29%), Positives = 399/879 (45%), Gaps = 104/879 (11%)

Query: 322  IHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPV- 380
            +H++  +++ +  L++   H        L   F+D+L     +V   AL   ++    + 
Sbjct: 1031 LHFDLPVAYALQCLLSDCSH---FTNGFLPPEFYDVLNALDDKVQEKALLSFHAKLTRIN 1087

Query: 381  ----FDA-CKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNR 435
                F A  K  + V E +   P L  G         V ++++TP++    PP+   SNR
Sbjct: 1088 IAEQFSAYLKEERSVLESMCSSPSLGSG-------AVVYKVIVTPSRVVFCPPDPAPSNR 1140

Query: 436  VLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSIL 495
            V R +   ++ F+ + F D+ ++ ++                         + +R+R++L
Sbjct: 1141 VFRHWG--SENFMYMYFRDDNMERLDYT--------------------SGNILRRIRNVL 1178

Query: 496  SGGFYLC----GRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKC 550
              G  +     G +F+FL  S SQ+R+ SA F   D      +++ W+G  +   + AK 
Sbjct: 1179 KKGIEVPHARDGCRFNFLGCSLSQVRNSSAIFTLLDHH----EVRSWIGDLSHLTSPAKY 1234

Query: 551  AARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVN 610
              R+GQ FSST  T  V  + +D  + DI  + YVF+DG G+I    A  + ++L L   
Sbjct: 1235 LKRLGQAFSSTKETFNVSQSVLDNPVEDITNDDYVFTDGCGEIAKIGAESIVRELNLSYT 1294

Query: 611  PPPCAYQIRYAGCKGVVACW----PAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPG 666
            P   A+QIR  G KGV+       P       + LRESM+KF S+HT LEI +       
Sbjct: 1295 P--SAFQIRLGGAKGVLVVSDQDNPEVTREESILLRESMSKFASNHTMLEIVACAGKSEA 1352

Query: 667  FLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGN--TAAI 724
            +L RQ + +LS L + +++   MQ+  LS+L  ++   D A+  L A    +       +
Sbjct: 1353 YLTRQSVLILSDLGINEDVLMEMQEQFLSELRTLIASDDGAYFELKAVLPPKVIWWIDVL 1412

Query: 725  MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI 784
                G     +  L  +   I   +L     +ARI +  GR LMG  D  G L+ G+ F+
Sbjct: 1413 TRKLGVKILDDEFLSSLARTIYHYRLANTVMRARIPIAQGRTLMGVADFTGTLDYGEVFV 1472

Query: 785  Q--VSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEA-VDHP-ELH 840
            Q  V+E   G        R+    ++ V      + ++PC HPGDIR+L    D P +L 
Sbjct: 1473 QYSVTEEETG------ADRYVTLDEVDV-----AVHRSPCHHPGDIRVLRCRADVPRQLR 1521

Query: 841  HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAA-EAKTL 899
             L DC+VFP +G RPH +E +G DLDGD++ V WD+ LIP   +   PM ++   E  T 
Sbjct: 1522 QLKDCIVFPCQGPRPHPDECTGGDLDGDMFVVIWDKRLIPSRTQVHEPMAFDEENEGDTS 1581

Query: 900  TR------PVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAAT 953
             R        D   +I+F+   + ++ LG   NAH+   D S  G+LDE+   LA + + 
Sbjct: 1582 PRGGEFYQSTDDDGLIDFYVHSIQDDILGVASNAHLALCDSSHEGSLDESAKALARICSK 1641

Query: 954  AVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSE 1013
             VD  ++ K + +   L PK YPDFM  +   SY S K+LG+++R+ K  +  D +++  
Sbjct: 1642 QVDSLRSEKDLEIVRSLAPKNYPDFMQNKEKPSYPSKKVLGKMFRRCKAIF--DTTMTKG 1699

Query: 1014 VDINPV-DIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWS 1072
            V   PV D H+ T        D++  A      Y  +L  LL       E EL TG I  
Sbjct: 1700 VTQMPVRDDHFLT----AGYTDYVDHAKMLYRQYKLRLRALLLMSGAQTEAELATGMIVE 1755

Query: 1073 MPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQV 1132
             P           E+ K  +  L+  FR  F   + D   L+  E+  L    ASA Y V
Sbjct: 1756 PPSVYKADYFRFGEQCKDVFYELQTAFRAQF---NGDTSTLASGEELKL----ASACYFV 1808

Query: 1133 TYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
             Y              DS  S   LSF WI  D L  IK
Sbjct: 1809 AY-------------DDSDASTRSLSFTWIVIDLLTTIK 1834


>gi|341880571|gb|EGT36506.1| hypothetical protein CAEBREN_02888 [Caenorhabditis brenneri]
          Length = 1640

 Score =  308 bits (788), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 274/973 (28%), Positives = 448/973 (46%), Gaps = 190/973 (19%)

Query: 330  FEIMFLVNAVMHKGIINQHQLS------DSFFD---LLRGQSREVNVAALKHIYSYKWPV 380
            F I +L+  ++ +G + + QL       ++F +   L   ++ ++  AAL+ +      +
Sbjct: 391  FAITYLIECLLSRGAVVKDQLLLNEIHWENFLNVIILYYKKNDKLCEAALEDLIH----L 446

Query: 381  FDACKRLKLVQEWLLK------DPELYKG--PKQIDDIVE-VRRLVITPTKAYCLPPEVE 431
             D  KR+  + + L K        +L  G   K+I D  + VR++V TPT+   + PE  
Sbjct: 447  IDGRKRIGCITKCLDKICQKRERMQLINGLSEKEIHDGFQIVRKVVFTPTRVIYVAPEAI 506

Query: 432  LSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRV 491
            + NRVLR++     + LR+TF D+    M  N     +     + T N F ++       
Sbjct: 507  MGNRVLRRFDKDGTKVLRITFRDDNNSKMRTNTTEELL-----EKTANKFFRE------- 554

Query: 492  RSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---------------FSEDGKTSVLDIK 536
                  G  +  R F FL  S+SQ+RD  A+F               +    +  +L  K
Sbjct: 555  ------GVRVANRDFGFLGCSNSQMRDSGAYFMLKATPGQLERFYRKYPRHTREQLLSYK 608

Query: 537  KW-------MGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDI------KRN 582
             W       +G+F++ +N+ K  ARMGQCF+ +  T      +   ++ D       K+ 
Sbjct: 609  PWIDEVRLNLGKFSEVENVPKMIARMGQCFTQSRLTGVALERKNYCKIFDYEGGKNSKKA 668

Query: 583  GYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGD------- 635
             Y FSDG+G ++   A  +AQ +  D + P C +QIR+ G KGV+A  P   D       
Sbjct: 669  AYTFSDGVGMMSCRFAKIMAQSMNYDRSVPSC-FQIRFRGNKGVIAMEPQLDDLRNWSIR 727

Query: 636  --------GIRMSLRESMNKFQSHHT---TLEICSWTRFQPGFLNRQIITLLSTLNVPDE 684
                     I+++ R S  KFQ+ H     +E+       P  LN+ +I +L  ++   E
Sbjct: 728  HQLDDLIPEIKVAFRPSQIKFQAKHIEGDQIEMVKPAGPVPVSLNKPLINILDQVS---E 784

Query: 685  MFWSM-QDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAA-----------------IML 726
            M   +    M+S++ + L+D  V       + A+Q N                    +  
Sbjct: 785  MQGVLCHKRMVSRIEE-LMDRQVQ------SFAKQMNDETYCRNRLKEFPRRVDIDYLRT 837

Query: 727  SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFI 784
            + GF    EP  R ++       +     K +I +P   GR L G +DE G L+ GQ F+
Sbjct: 838  TWGFTLSREPFFRSLIKAAIKFSITKQLRKEQIPIPKELGRTLFGVVDETGRLQYGQVFV 897

Query: 785  QVSEPFLGNCFSKHGSRFAE--TKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
            Q S     N  +KH  R A+   +   V+ G ++I+KNPC+ PGD+RI EAVD PELHH+
Sbjct: 898  QYS----SNILNKHPVRLADQSVQNGVVVTGPILISKNPCIVPGDVRIFEAVDIPELHHM 953

Query: 843  YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLT 900
             D +VFPQ G RPH +E +GSDLDGD Y V WD  ++      W  P  +++  + +   
Sbjct: 954  CDVVVFPQSGPRPHPDEMAGSDLDGDEYSVIWDPQML----LEWNEPAFDFSVEKQRIEW 1009

Query: 901  RPVDQRDII-EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
             P +  +++ EF+ +++  +++G I NAH+ ++D  +YG +   C+ LA+  + AVDF K
Sbjct: 1010 DPNEVDNLMREFYVQYLKLDSVGQISNAHLHNSD--QYGLMSTVCMNLAKKNSQAVDFTK 1067

Query: 960  TGKIVTMPAHL-----------------KPKLYPDF-MGKEAYQSYKSNKILGRLYRQSK 1001
            +G     PA +                  P+  PDF MG E    Y S ++ GRL+R+ +
Sbjct: 1068 SG---IPPAEMTRDWRRDPITDEMVPPENPERIPDFHMGNERNPQYVSPRLCGRLFREFQ 1124

Query: 1002 DAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNR 1061
             A D  I +S E D    DI  D D+ +     F+ +A  +  +Y+GQL  ++E Y +  
Sbjct: 1125 -AIDNVIKISEEKD-ELYDIEIDEDIMIYGYERFMVEARTELANYNGQLRSIMETYGIAT 1182

Query: 1062 EEELVTGHIWSMPKYNSRKQGE----------LKERLKHSYSALRKEFRQVFEKMDSDCE 1111
            E E+++G I  M    S K  +          ++ R+       R++F + F    S C 
Sbjct: 1183 EGEIMSGCIIEMRNRISDKDQDDMSFFNTNLMIETRVTTLICRFREKFFEQFGGYQSCCS 1242

Query: 1112 LL-SEDEKNA------------LFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLS 1158
            ++ + DE N+               +KA AWY+  Y  E+ +         S R    LS
Sbjct: 1243 IIENADENNSSCLAYRCRSATNSMMQKAVAWYRACY--EFAQ---------SNRETRKLS 1291

Query: 1159 FAWIANDYLARIK 1171
            FAWI  D +A+++
Sbjct: 1292 FAWIVYDVIAKVR 1304


>gi|397600982|gb|EJK57779.1| hypothetical protein THAOC_22138 [Thalassiosira oceanica]
          Length = 1292

 Score =  307 bits (786), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 241/767 (31%), Positives = 371/767 (48%), Gaps = 127/767 (16%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKD----LADRFLRVTFMDEGLQTMNANVLSYF 468
            V RL++TPT+        E+SNR++RK+      +++ F+R+T  DE    + ++     
Sbjct: 449  VPRLLLTPTRLVVTGFHFEISNRMIRKFIQDHNFMSESFVRLTLGDENSDKLYSD----- 503

Query: 469  IAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDG 528
                  DIT+       +V +R++  + GG  + G+ + FLA+SSSQL++ S W  S + 
Sbjct: 504  ------DITV-------QVEERIKEFVLGGIDIVGKHYKFLAYSSSQLKEQSLWLVSPER 550

Query: 529  KTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTE--------------VD 573
              +V  +++ MG F+  K  +K AAR+GQCFS+T +  E   +               V 
Sbjct: 551  GWTVDGMRESMGDFSMCKTPSKYAARIGQCFSTTVSVAEGSGSRNIFSAMDKTTDWLRVK 610

Query: 574  PELPDI--KRNGYVF--SDGIGKITPDLAMEVAQKLKLDVNPPP--CAYQIRYAGCKGVV 627
             +L DI  + NG     SDG+G I  ++     +++           A QIR  G KGV+
Sbjct: 611  DDLEDITSRWNGLEMQHSDGVGLIRKEVLQNAIKQVPFGPRDKTHISAIQIRLGGAKGVL 670

Query: 628  ACWPAK-----GDGIR---MSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTL 679
              W         + IR   + LR S  KF + + +LE+ +     P FLNR ++ L S L
Sbjct: 671  VGWSFDQLNHLKNEIRNFDICLRPSQVKFSAPYMSLEVVNLATRIPYFLNRNVVLLGSHL 730

Query: 680  NVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGN---TAAIMLSAGFNPQTEP 736
             + D +F  +Q  M+  LN +L D+D A   L +      +   T   ML AG  P  +P
Sbjct: 731  GIQDGIFLCLQKEMIQDLNLLLYDADHALRFLPSLSGPDCSLVSTLMSMLLAGMKPNIDP 790

Query: 737  HLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFS 796
             L   L   RA  +  LR+KARIFV  G  LMGCLDE G++     FIQV          
Sbjct: 791  FLFSCLHTTRAHHMMTLRKKARIFVKDGAVLMGCLDETGLVPENSVFIQV---------- 840

Query: 797  KHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPH 856
            KH     +    + I+G V++ K+P +HPGD+R+LEAV+ PEL ++ D ++F + G RP 
Sbjct: 841  KH-----DNGSFKPIEGKVMVTKHPVMHPGDMRMLEAVNIPELKNMKDIIIFSRHGSRPE 895

Query: 857  TNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEA-KTLTRPVDQRDIIEFFAKH 915
             ++ SGSDLDGDL+ VTWD+ L    ++S  PMEY+        T P++   ++  F  H
Sbjct: 896  ADKMSGSDLDGDLFAVTWDKRLF--LRQSLDPMEYSPPPTLGQETPPINDSSLLAHFVGH 953

Query: 916  MVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPK-- 973
              N+NLG I    + HA  ++ GA    C+ LA+LA+ AVDFPK+G   T+P  LK K  
Sbjct: 954  AKNDNLGRISMLWLDHA-VTKGGAGCHECVRLAKLASIAVDFPKSGISATLPDDLKIKST 1012

Query: 974  ----------------LYPDFMGKEAYQSYKSNKIL---GRLY----RQSKDAYDEDISV 1010
                             +P    +EA +   +  +    G LY       KD    D   
Sbjct: 1013 VIQNITSLSICFERIPSFPQKTVEEALELGFATDVFGCDGELYDMVVSAMKDGTTFDCVA 1072

Query: 1011 SSEVDIN----------PVDIH------YDTDLEVP------------ESVDFIAD-AWN 1041
             +    N          P D+H      Y+ + ++P            E  DF+ + A  
Sbjct: 1073 LAGRKRNDKGLILRTGKPRDLHTAKETVYECNPKLPFHLGWKRNEDNQEMYDFMLEFALA 1132

Query: 1042 QKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERL 1088
            Q+ +Y+ QL  L+ ++KV+ E E+VTG I    K N R++ ++ E +
Sbjct: 1133 QRSAYEEQLGALMNKFKVHTEGEIVTGIILKHHKLNKRRRHDVSEEI 1179


>gi|389628880|ref|XP_003712093.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
 gi|351644425|gb|EHA52286.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
          Length = 1292

 Score =  306 bits (784), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 260/865 (30%), Positives = 399/865 (46%), Gaps = 140/865 (16%)

Query: 333  MFLVNAVMHKGIINQ-------HQLSDSFF-DLLRGQS--REVNVAALKHIYSYKWP--- 379
            +F++ A+ + G ++        HQL   F+ D L G++      V +L       WP   
Sbjct: 353  LFVLQALFYNGYLHPATVLEILHQLFRRFYEDRLSGRTFIAPEAVKSLMDAECIPWPSPY 412

Query: 380  ----VFDACKRLKLVQEWLLKDPELYKGP--------KQIDDIVEVRRLVITPTKAYCLP 427
                 F+    +K    W+ +  E ++G         +Q  ++  + R+V+TPT+     
Sbjct: 413  EDPEYFEVSSLMK----WIYEKNEEFQGGFDLRTGQLRQNSNLTHIYRVVVTPTRITLHG 468

Query: 428  PEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRV 487
            PE+E  NRVLRKY    D F+RV F DE  Q                DI  +      RV
Sbjct: 469  PEIENKNRVLRKYPKHQDCFVRVQFCDENTQ----------------DIRFSPKISYDRV 512

Query: 488  FKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF----FSEDGKTSVLDIKKWMGRFT 543
            + R   +L+ G  + GR ++FL FS S LR  SAWF    F +  + +   I K +G F+
Sbjct: 513  YSRFLDVLNRGIQIAGRVYNFLGFSHSSLRTHSAWFSAPFFDQGSQHTHASIIKSLGEFS 572

Query: 544  DKNI-AKCAARMGQCFSSTYATVEV--PPTEVDPELPDI-KRNGY-VFSDGIGKITPDLA 598
                 AKCAAR+GQ FS T + V++     EV    PDI  R+G  VFSDG+GKI+  + 
Sbjct: 573  SIQCPAKCAARIGQAFSETPSVVDLRDHDVEVVTHFPDITNRDGSRVFSDGVGKISESMM 632

Query: 599  MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHT-TLEI 657
              + + + +  N P C +Q+R+ G KG++A       G ++  R+SM KF+S     LEI
Sbjct: 633  HIIWENIPMKKNAPTC-FQVRWGGAKGMLAL-DMTLKGTKVCFRDSMTKFESDDVHQLEI 690

Query: 658  C-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACA 716
            C S ++  P  LNRQ+I +L  +      F  +Q   L +L  +   +   +  L A   
Sbjct: 691  CDSGSKPIPLVLNRQMIKILEDMGTDRSWFMRLQSYRLQELRSITASAYNTWHFLDAQNV 750

Query: 717  EQ----GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLD 772
             Q    G         G + +T+  +R ++  +   +L  L+ KARI V  G+ L G +D
Sbjct: 751  GQAIKLGKFINFADKHGMDYRTDDFMRSVVEAVVLRELRLLKHKARIPVKYGKTLFGIID 810

Query: 773  ELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKG-FVVIAKNPCLHPGDIRIL 831
            E G L  G+  I          FS+ G    E +      G  V++ ++P LHPGDI+I 
Sbjct: 811  ETGYLREGEVVISFG-------FSQTG----EDQPTPPQDGQIVIVTRSPALHPGDIQIA 859

Query: 832  EAV----DHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWP 887
            + V     HP  HH+ +C++F Q G R   ++ SG DLDGD+Y V WD + +P  K+++ 
Sbjct: 860  KQVVPPPSHPLSHHI-NCIIFSQHGQRDLPSQLSGGDLDGDIYNVIWDGDAMP--KETFD 916

Query: 888  PMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILL 947
            P +Y   EA+ + R V   D+ +FF   M  ++LG I   HV+ AD  + G L + C  L
Sbjct: 917  PADYPRVEAQDIGRRVVSADMAQFFIDFMKTDHLGVIATRHVILADQLDDGTLSQECRTL 976

Query: 948  AELAATAVDFPKTGKIVTMPAHLKP-----KLYPDFM-----------GK---------- 981
            A L +TAVDF K+G    +PA LK      K  PDF+           GK          
Sbjct: 977  AGLHSTAVDFSKSG----IPAELKALPRANKFRPDFLSPGPITNYHDKGKITLEEYTISE 1032

Query: 982  -----------EAYQSYKSNKILGRLYRQ--SKDAYDEDISVSSEVDIN-PVDIHYDTDL 1027
                         Y  Y+S K+LG+LYR+   +  ++E+I V+  VD N P       D 
Sbjct: 1033 EAEEEEEEGDGPRYGYYRSEKVLGQLYREIDEEKIWNENIRVA--VDHNKPSFWETFIDW 1090

Query: 1028 EVPESVDFIADAW--------NQKCSYDGQLNGLLEQYK---VN--REEELVTGHIWSMP 1074
             +  +    A +W          K +YD  + G + +Y    VN   E E+  G I +  
Sbjct: 1091 AIKSAATVGAVSWPVRIDSARRLKSAYDDHVRGHMSKYSDHPVNPISEREVFIGAILNKT 1150

Query: 1075 KYNSRKQGELKERLKHSYSALRKEF 1099
               + +Q +   +L+  +      F
Sbjct: 1151 GVQTHRQRDASHKLRDEFERTANHF 1175


>gi|440476070|gb|ELQ44707.1| RNA-dependent rna polymerase [Magnaporthe oryzae Y34]
 gi|440486893|gb|ELQ66719.1| RNA-dependent rna polymerase [Magnaporthe oryzae P131]
          Length = 1338

 Score =  305 bits (782), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 260/865 (30%), Positives = 399/865 (46%), Gaps = 140/865 (16%)

Query: 333  MFLVNAVMHKGIINQ-------HQLSDSFF-DLLRGQS--REVNVAALKHIYSYKWP--- 379
            +F++ A+ + G ++        HQL   F+ D L G++      V +L       WP   
Sbjct: 353  LFVLQALFYNGYLHPATVLEILHQLFRRFYEDRLSGRTFIAPEAVKSLMDAECIPWPSPY 412

Query: 380  ----VFDACKRLKLVQEWLLKDPELYKGP--------KQIDDIVEVRRLVITPTKAYCLP 427
                 F+    +K    W+ +  E ++G         +Q  ++  + R+V+TPT+     
Sbjct: 413  EDPEYFEVSSLMK----WIYEKNEEFQGGFDLRTGQLRQNSNLTHIYRVVVTPTRITLHG 468

Query: 428  PEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRV 487
            PE+E  NRVLRKY    D F+RV F DE  Q                DI  +      RV
Sbjct: 469  PEIENKNRVLRKYPKHQDCFVRVQFCDENTQ----------------DIRFSPKISYDRV 512

Query: 488  FKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF----FSEDGKTSVLDIKKWMGRFT 543
            + R   +L+ G  + GR ++FL FS S LR  SAWF    F +  + +   I K +G F+
Sbjct: 513  YSRFLDVLNRGIQIAGRVYNFLGFSHSSLRTHSAWFSAPFFDQGSQHTHASIIKSLGEFS 572

Query: 544  DKNI-AKCAARMGQCFSSTYATVEV--PPTEVDPELPDI-KRNGY-VFSDGIGKITPDLA 598
                 AKCAAR+GQ FS T + V++     EV    PDI  R+G  VFSDG+GKI+  + 
Sbjct: 573  SIQCPAKCAARIGQAFSETPSVVDLRDHDVEVVTHFPDITNRDGSRVFSDGVGKISESMM 632

Query: 599  MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHT-TLEI 657
              + + + +  N P C +Q+R+ G KG++A       G ++  R+SM KF+S     LEI
Sbjct: 633  HIIWENIPMKKNAPTC-FQVRWGGAKGMLAL-DMTLKGTKVCFRDSMTKFESDDVHQLEI 690

Query: 658  C-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACA 716
            C S ++  P  LNRQ+I +L  +      F  +Q   L +L  +   +   +  L A   
Sbjct: 691  CDSGSKPIPLVLNRQMIKILEDMGTDRSWFMRLQSYRLQELRSITASAYNTWHFLDAQNV 750

Query: 717  EQ----GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLD 772
             Q    G         G + +T+  +R ++  +   +L  L+ KARI V  G+ L G +D
Sbjct: 751  GQAIKLGKFINFADKHGMDYRTDDFMRSVVEAVVLRELRLLKHKARIPVKYGKTLFGIID 810

Query: 773  ELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKG-FVVIAKNPCLHPGDIRIL 831
            E G L  G+  I          FS+ G    E +      G  V++ ++P LHPGDI+I 
Sbjct: 811  ETGYLREGEVVISFG-------FSQTG----EDQPTPPQDGQIVIVTRSPALHPGDIQIA 859

Query: 832  EAV----DHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWP 887
            + V     HP  HH+ +C++F Q G R   ++ SG DLDGD+Y V WD + +P  K+++ 
Sbjct: 860  KQVVPPPSHPLSHHI-NCIIFSQHGQRDLPSQLSGGDLDGDIYNVIWDGDAMP--KETFD 916

Query: 888  PMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILL 947
            P +Y   EA+ + R V   D+ +FF   M  ++LG I   HV+ AD  + G L + C  L
Sbjct: 917  PADYPRVEAQDIGRRVVSADMAQFFIDFMKTDHLGVIATRHVILADQLDDGTLSQECRTL 976

Query: 948  AELAATAVDFPKTGKIVTMPAHLKP-----KLYPDFM-----------GK---------- 981
            A L +TAVDF K+G    +PA LK      K  PDF+           GK          
Sbjct: 977  AGLHSTAVDFSKSG----IPAELKALPRANKFRPDFLSPGPITNYHDKGKITLEEYTISE 1032

Query: 982  -----------EAYQSYKSNKILGRLYRQ--SKDAYDEDISVSSEVDIN-PVDIHYDTDL 1027
                         Y  Y+S K+LG+LYR+   +  ++E+I V+  VD N P       D 
Sbjct: 1033 EAEEEEEEGDGPRYGYYRSEKVLGQLYREIDEEKIWNENIRVA--VDHNKPSFWETFIDW 1090

Query: 1028 EVPESVDFIADAW--------NQKCSYDGQLNGLLEQYK---VN--REEELVTGHIWSMP 1074
             +  +    A +W          K +YD  + G + +Y    VN   E E+  G I +  
Sbjct: 1091 AIKSAATVGAVSWPVRIDSARRLKSAYDDHVRGHMSKYSDHPVNPISEREVFIGAILNKT 1150

Query: 1075 KYNSRKQGELKERLKHSYSALRKEF 1099
               + +Q +   +L+  +      F
Sbjct: 1151 GVQTHRQRDASHKLRDEFERTANHF 1175


>gi|324500541|gb|ADY40252.1| RNA-dependent RNA polymerase EGO-1 [Ascaris suum]
 gi|333440978|gb|AEF32764.1| RdRP1 [Ascaris suum]
          Length = 1644

 Score =  305 bits (782), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 272/948 (28%), Positives = 457/948 (48%), Gaps = 155/948 (16%)

Query: 330  FEIMFLVNAVMHKGIINQHQL------SDSFFDLLR---GQSREVNVAALKHIYSY---- 376
            F + +L+ A+M +G I + Q+       + F DL+     +++E+ + +L+ + +     
Sbjct: 447  FGLEYLIAALMTRGAIVKDQILVSAKKRNEFVDLIVRRFHENKELTLESLERLLNVVDET 506

Query: 377  -KWPV----FDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVE 431
             + P     F+  +   L Q+ +L+  E+Y+  K+ D    VR++VITPT+   + PE+ 
Sbjct: 507  KQTPSLLISFEKIRNALLSQKDVLE--EIYRESKR-DGYQRVRKVVITPTRMLFVVPELL 563

Query: 432  LSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRV 491
            + NRVLR +    +  LRV F D+    +  N             T+  F  ++ VF   
Sbjct: 564  MGNRVLRNFDKDGNGSLRVQFRDDDSSQLRRN-------------TVGPFLIQSTVF--- 607

Query: 492  RSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLD-IKKWMGRFTDKNIAKC 550
             + L+ G ++  R F +L  S+SQLRD   +FF +DGK      I+  +G+F   NI K 
Sbjct: 608  -NTLTRGIHIGSRHFVYLGSSNSQLRDNGCYFF-DDGKGGHAQWIRTQLGKFDRGNIPKM 665

Query: 551  AARMGQCFSSTYATVEVPPTEVDPELPDI------KRNGYVFSDGIGKITPDLAMEVAQK 604
             +RMGQCF+       V       +  D+      +   Y+FSDG+G+++ + A ++A+ 
Sbjct: 666  MSRMGQCFTQAKQCAVVLKRHKYNKTWDVIGGRDSRGEPYIFSDGVGRLSQEFAEKIAKD 725

Query: 605  LKLDVNPPPCAYQIRYAGCKGVVACWP--------AKGDGIR-------------MSLRE 643
            + L  N  P  +QIR+ G KGV++  P        A   GI+             +  R 
Sbjct: 726  INL-ANAVPSCFQIRHRGMKGVLSVDPLLDDRKQWAIAHGIKDGSMATSRINDLAVVFRP 784

Query: 644  SMNKFQS-HHTTLEICSWTRFQPGFLNRQIITLLSTLN---------VPDEMFWSMQDSM 693
            S +KF++     +EI  ++      LNR +I++L  ++            E    + D  
Sbjct: 785  SQDKFKAPRDEAIEIVKYSSPTCVSLNRPMISILDQVSSMQGHTVHMTVTERIHELLDMQ 844

Query: 694  LSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGL 753
            L +L ++ +D D   + L        N   + L  GF    EP  R +L   RA+  + L
Sbjct: 845  LMELAEIFLDEDRCRDKLNE-LPRLMNVDRLSLVRGFALTQEPFFRSLL---RASVRYTL 900

Query: 754  RE---KARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGS-RFAETKK 807
            ++   K +I +P+  GR + G +DE G L+ GQ F+Q    +  N + K+   R A+T  
Sbjct: 901  KKQLAKEQILIPSHLGRSMFGVMDETGQLQSGQIFVQ----YTNNVWLKNPPPRAAKT-- 954

Query: 808  LQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDG 867
              ++KG V++ KNPC+  GD+R+LEAVD PELHHL D +VFPQ G RPH +E +GSDLDG
Sbjct: 955  --ILKGPVLMTKNPCIVAGDVRLLEAVDIPELHHLVDVVVFPQYGPRPHPDEMAGSDLDG 1012

Query: 868  DLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDI--IEFFAKHMVNENLGTIC 925
            D Y V WD+ L+    ++  P+++     K      D+ D+   +FF  ++  +++G+I 
Sbjct: 1013 DEYSVIWDKKLMFIRNEN--PLDFTKRMRKYEEVGTDKVDLEMRKFFVNYIKQDSIGSIA 1070

Query: 926  NAHVVHADHSEYGALDENCILLAELAATAVDFPKT-------------GKIVTMPAHLKP 972
            NA +V+AD   YG   E C  +A+  + AVDFPKT             GK  +     + 
Sbjct: 1071 NAFLVNADL--YGITSEICENIAKKHSQAVDFPKTGDAPEPLTRVWTIGKDGSFVPPERS 1128

Query: 973  KLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPES 1032
            + +PDFM K    SY S +++G+LYR+ +   D+ ++++S +D    ++  D  L+ P  
Sbjct: 1129 ERWPDFMCKNHEPSYISPRLVGQLYRRIR-LVDDVLTLTSALD-EVTELELDPMLQYPGW 1186

Query: 1033 VDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGE------LKE 1086
              +  +A  Q  SY+  +  +L+ Y +  E +L++G I  +    S +  +         
Sbjct: 1187 EKYAENARLQLDSYNAHIRAILDNYGIQDEGQLLSGCISVIRNRISDRDVDDMSFFNTNH 1246

Query: 1087 RLKHSYSALRKEFRQVFEKMDSDCELLSEDEK------NALFER------------KASA 1128
             ++   +++ + FR  F +     E  +E ++      N   ER            KASA
Sbjct: 1247 VIEKKVASIFRMFRHAFFREFGGYERCTEVDREGATSDNGDDERRVCLNPTYSMRCKASA 1306

Query: 1129 WYQVTYHPEWVKKSLDLQEQDSARSV-VLLSFAWIANDYLARIKIRCR 1175
            +Y V Y             Q++A S   LLSF W+A D L+ +K   R
Sbjct: 1307 YYVVCY-------------QEAAESTRRLLSFGWLAWDVLSHVKQEMR 1341


>gi|393908637|gb|EJD75145.1| CBR-RRF-1 protein [Loa loa]
          Length = 1689

 Score =  303 bits (775), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 250/844 (29%), Positives = 392/844 (46%), Gaps = 137/844 (16%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDE-GLQTMNANVLSYFIAP 471
            VR+ VITPT+   + PE+ + NRVLR++ +  DR LR+ F D+ G       V SY I  
Sbjct: 586  VRKAVITPTRMLLVVPELLMGNRVLREFDEHGDRALRIQFRDDDGTHLRRNKVGSYIIET 645

Query: 472  IVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTS 531
             V +  L+                  G Y+    F +LA S+SQ+RD   +FF++     
Sbjct: 646  TVHNCLLH------------------GIYISNSHFVYLASSNSQMRDNGCYFFNDGDDGR 687

Query: 532  VLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG------YV 585
            V  I++ +G+F   NI K  +RMGQCF+ +  +  V   +   +  D+          ++
Sbjct: 688  VGKIREKLGKFDRTNIPKLMSRMGQCFTQSKESDVVLKRKKYNKTYDVIGGKDSCGEPFI 747

Query: 586  FSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPA------------- 632
            FSDG+GK++ D A  +A+ L L+   P C +Q R  G KGV++  PA             
Sbjct: 748  FSDGVGKLSEDFAERIAKDLGLNKCVPSC-FQFRLRGLKGVLSVDPALRQRRLWAECNDV 806

Query: 633  --------KGDGIRMSLRESMNKFQS-HHTTLEICSWTRFQPGFLNRQIITLLSTLNVPD 683
                    K + + +  R S +KF +     +EI  ++   P  LNR  I +L  ++   
Sbjct: 807  EDKNRKTEKVNDLDVLFRPSQDKFHAPRKEMIEIVKYSSPTPVCLNRPFINILDQVSDMQ 866

Query: 684  ---------EMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQT 734
                          + D  L +L+  L+  +   E L A    + N   + L+ GF    
Sbjct: 867  GFDVHRRIVHRIHGLLDRQLLQLSDALMSENKCRERL-AEFPRRINVQYLSLARGFTLTQ 925

Query: 735  EPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPFLG 792
            EP  RG+L       L     K +I +PA  GR + G LDE G+L+ GQ F+Q    F  
Sbjct: 926  EPFFRGLLIASVRFTLQKQLFKEQIQIPANLGRTMFGILDETGLLQYGQVFVQ----FTN 981

Query: 793  NCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKG 852
            N   K  S+ A      ++KG V+I KNP +  GD+R+ EA+D PEL HL D +VFPQ G
Sbjct: 982  NVSLKTPSKAAAKT---IVKGPVLITKNPSIVAGDVRVFEAIDLPELRHLVDVVVFPQHG 1038

Query: 853  DRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQ------- 905
             RPHT+E +GSDLDGD Y V WD+ ++    +   PM+++      L RP D        
Sbjct: 1039 PRPHTDEMAGSDLDGDEYSVIWDDQMLFDHNEE--PMDFSK-----LVRPPDLLEEDEVV 1091

Query: 906  RDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKT----- 960
            R++  F+ K+++ +++G I NA + ++D   +G   + C  +AE  + +VDFPKT     
Sbjct: 1092 REMRRFYVKYIMQDSVGVIANAFLANSDM--FGIASDICTSIAEKHSQSVDFPKTGWPPR 1149

Query: 961  -----------GKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDIS 1009
                       GKI  MP   +P+ +PDFM K    SY S +++G+L+R+ +  +  D+ 
Sbjct: 1150 PLVKEWSKGPDGKI--MPPE-RPERWPDFMCKTHEPSYVSTRLVGQLFRRIRLVH--DVL 1204

Query: 1010 VSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGH 1069
              + V      I  D  LE      +  +A     +Y   +  L++ Y +  E +L +G 
Sbjct: 1205 TITAVSEGHSQIVVDPLLEYHGWESYENNANLNLIAYSAHIKALMDNYGIEDEYQLFSGC 1264

Query: 1070 IWSMPKYNSRKQGE----------LKERLKHSYSALRKEFRQVFEKMDS----DCELLSE 1115
               +    S +  +          ++++L + + + R  F   F    S    D +  S+
Sbjct: 1265 FSKIRNRISDRDTDDMSQFNTNFFIEQKLTNIFMSFRSSFFAEFGDFMSCTEPDDDFHSK 1324

Query: 1116 DEKNALF--------ERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYL 1167
            D     +        ++KASA+Y V Y     K    + E+       LLSF WIA D L
Sbjct: 1325 DMTERRYCKCPTMEMKKKASAYYIVCYR----KAVNGIGER-------LLSFPWIAWDIL 1373

Query: 1168 ARIK 1171
            A IK
Sbjct: 1374 AEIK 1377


>gi|302660624|ref|XP_003021989.1| hypothetical protein TRV_03883 [Trichophyton verrucosum HKI 0517]
 gi|291185913|gb|EFE41371.1| hypothetical protein TRV_03883 [Trichophyton verrucosum HKI 0517]
          Length = 1233

 Score =  303 bits (775), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 260/846 (30%), Positives = 375/846 (44%), Gaps = 138/846 (16%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V V R  +TP   Y   P  E  NR+LRKY D  D F+RV F+DE               
Sbjct: 416  VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGD------------ 463

Query: 471  PIVRDITLNSFSQKTRVF-KRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS--ED 527
            P+  D + N      ++F +R   ++  G  + GR+F FL FS S LR  + WF +    
Sbjct: 464  PVFFDPSANL----EQIFHQRFAGVMKRGIEIAGREFEFLGFSHSSLRAQTCWFAAPFTT 519

Query: 528  GKTSVLDIKKWMGRFT----DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG 583
                 L+ +  +G        ++ +K AAR+GQ FS T  ++ V    V    PD+KRN 
Sbjct: 520  ANGDYLNARTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVKRND 579

Query: 584  YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRE 643
             +FSDG+G I+ DL   +  +  L     P  +QIR AG KG+V+    +  G  + LRE
Sbjct: 580  RIFSDGVGVISRDLMYRIWNEYALREKVKPTVFQIRIAGAKGMVSL-DTRRKGEFLMLRE 638

Query: 644  SMNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
            SM KF +     +EIC +  R  P +LN QII +L  L VP E F  +Q   ++ L    
Sbjct: 639  SMVKFPTDDLYNIEICGAGIRALPFYLNNQIIKILEDLEVPFEAFHQLQQDEINFLYSTF 698

Query: 702  VDSDVAFEVLTAACAEQGNTAA----IMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKA 757
              ++ A + L  +   +         ++   G     +P L+ ++      +L  L+ +A
Sbjct: 699  NSTERAAKFLEDSPVPKSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRA 758

Query: 758  RIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVI 817
            RI VP    L G +DE G L+  + +      +LG           + ++  +++  VVI
Sbjct: 759  RIRVPNAVTLYGIMDETGYLKENEIYCA----YLG----------GDGRREILVRDNVVI 804

Query: 818  AKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTW 874
             ++P LHPGDI+++ AVD P    L  L++C+ F Q GDR   +  SG DLDGDLY + +
Sbjct: 805  TRSPALHPGDIQVVNAVDVPANSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIY 864

Query: 875  DENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADH 934
            D  L+P  +K+ PP +Y   EAK L R V+  DII+FF   M  + LG I   H   AD 
Sbjct: 865  DTRLVP--RKTIPPADYPRVEAKELDRKVETEDIIDFFVTFMQQDQLGRIATTHQTIADQ 922

Query: 935  SEYGALDENCILLAELAATAVDFPKTG---KIVTMPAHLKPKLYPDFMG----------- 980
            SE+G LD+ C+ LA L + AVD+ K+G    + ++P    P++ PDFM            
Sbjct: 923  SEFGTLDQACLKLAHLHSVAVDYSKSGIPVNVFSIPR--APRVRPDFMAPSPRFRVADSI 980

Query: 981  -------KEAYQS----------------YKSNKILGRLYR---------QSKDAYDEDI 1008
                   K   Q                 YKSN ILGRLYR         Q +DA   DI
Sbjct: 981  ESIIGEKKSTMQDDDDEDEDDSDHRRIRYYKSNNILGRLYRSIDERSFLCQLRDAGAVDI 1040

Query: 1009 S------------VSSEVD----INPVDIHYDT-DLEVPESVDFIADAWNQ--------K 1043
            +            V SEVD     +   I YDT D+  P    F  D +           
Sbjct: 1041 NTNTNVLRSIWNYVLSEVDGFLWTHLKGIFYDTRDMYEPPFTSFFLDMFMDIYRADALGI 1100

Query: 1044 CSYDGQLNGLLEQYKVN------REEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRK 1097
             SY+ +L  L+ +Y          E EL  G I      +  KQ   + R K +   +R 
Sbjct: 1101 ISYEDELRELMRKYSATPLKSSISEYELFVGTILG----HGHKQ---RRRDKDNAKEMRD 1153

Query: 1098 EFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLL 1157
            E+ ++ E   S           AL    A  W  +       K  +       A    LL
Sbjct: 1154 EYNRLVEFTISMIRGTESGGTEALERSIACFWVAIDGKGSGQKPGV---RSTHAHQDKLL 1210

Query: 1158 SFAWIA 1163
            SF WIA
Sbjct: 1211 SFPWIA 1216


>gi|326476492|gb|EGE00502.1| hypothetical protein TESG_07807 [Trichophyton tonsurans CBS 112818]
          Length = 1207

 Score =  302 bits (774), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 254/832 (30%), Positives = 369/832 (44%), Gaps = 136/832 (16%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V V R  +TP   Y   P  E  NR+LRKY D  D F+RV F+DE               
Sbjct: 416  VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGD------------ 463

Query: 471  PIVRDITLNSFSQKTRVF-KRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF-----F 524
            P+  D + N      ++F +R   ++  GF + GR+F FL FS S LR  + WF      
Sbjct: 464  PVFFDPSANL----EQIFHQRFAGVMKRGFEIAGREFEFLGFSHSSLRAQTCWFAAPFTT 519

Query: 525  SEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG 583
            S     +   I   +G F   ++ +K AAR+GQ FS T  ++ V    V  + PD+KRN 
Sbjct: 520  SNGDHLNARTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMKAPDVKRND 579

Query: 584  YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRE 643
             +FSDG+G I+ DL   +  +  L     P  +QIR AG KG+V+    +  G  + LRE
Sbjct: 580  RIFSDGVGVISRDLMYRIWNEYALRERVKPTVFQIRIAGAKGMVSL-DTRRKGEFLMLRE 638

Query: 644  SMNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
            SM KF +     +EIC +  R  P +LN QII +L  L VP E F  +Q   ++ L    
Sbjct: 639  SMVKFPTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQIQQDEINFLYSAF 698

Query: 702  VDSDVAFEVLTAACAEQGNTAA----IMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKA 757
              ++ A + L  +   +         ++   G     +P L+ ++      +L  L+ +A
Sbjct: 699  NSTERAAKFLEDSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRA 758

Query: 758  RIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVI 817
            RI VP    L G +DE G L+  + +      +LG    ++G R        +++  VVI
Sbjct: 759  RIRVPNAVTLYGIMDETGYLKENEIYCV----YLG----ENGRREI------LVRDKVVI 804

Query: 818  AKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTW 874
             ++P LHPGDI+++ AVD PE   L  L++C+ F Q GDR   +  SG DLDGDLY + +
Sbjct: 805  TRSPALHPGDIQVVNAVDVPENSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIY 864

Query: 875  DENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADH 934
            D  L+P  +K+ PP  Y   EAK L R V+  DI++FF   M  + LG I   H   AD 
Sbjct: 865  DTRLVP--RKTIPPANYPRVEAKELDRKVETEDIVDFFVTFMQQDQLGRIATTHQTIADQ 922

Query: 935  SEYGALDENCILLAELAATAVDFPKTG---KIVTMPAHLKPKLYPDFMG----------- 980
            SE G LD+ C+ LA L + AVD+ K+G    ++++P    P++ PDFM            
Sbjct: 923  SELGTLDQACLKLAHLHSVAVDYSKSGIAVNVLSIPR--APRVRPDFMAPSPRFRVADSI 980

Query: 981  -----------------------KEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDIN 1017
                                   +   + YKSN ILGRLYR    + DE   +    D+ 
Sbjct: 981  ESIIGEKNSAMQDDDDDDEDDSDRRKIRYYKSNNILGRLYR----SIDERSFLCQLRDVG 1036

Query: 1018 PVDIHYDTDLEVPESVDFIADAWNQKCS--------------------YDGQLNGLLEQY 1057
              D   +TD+        +   WN   S                    Y+ +L  L+ +Y
Sbjct: 1037 AADTKTNTDV--------LRSIWNYVLSEVDGFLWTHLTGIFHDTRDIYEDELRELMRKY 1088

Query: 1058 KVN------REEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCE 1111
                      E EL  G I      +  KQ   + R K +   +R E+ ++ E   S   
Sbjct: 1089 SATPLKSSITEYELFVGTILG----HGNKQ---RRRDKDNAKEMRDEYNRLVEFTISMIR 1141

Query: 1112 LLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIA 1163
                    AL    A  W  +       K  L       A    LLSF WIA
Sbjct: 1142 DTESGGTEALERSIACFWVAIDGKSSGQKPGL---RSAHAHQDKLLSFPWIA 1190


>gi|268530338|ref|XP_002630295.1| C. briggsae CBR-RRF-3 protein [Caenorhabditis briggsae]
          Length = 1766

 Score =  302 bits (774), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 238/835 (28%), Positives = 397/835 (47%), Gaps = 110/835 (13%)

Query: 409  DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYF 468
            + V V +++++P++   + PEV + NRV+R++    D  LR  F D+ L  +        
Sbjct: 676  NCVSVAKVIVSPSRVLLMAPEVMMVNRVVRRFG--PDYALRCVFRDDNLGRL-------- 725

Query: 469  IAPIVRDITLNSFSQKTRVF-KRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE- 526
                +RD ++N+    + V  + + + L  G  +  R +SFL +S+SQ+RD   + ++  
Sbjct: 726  ---AIRDFSINNIDHMSNVVTEAIYNTLKNGIQVADRHYSFLGWSNSQMRDQGCYLYAPR 782

Query: 527  ----DGKTS--VLDIKKWMGRFTDK-NIAKCAARMGQCFSSTYATVEVPPTE--VDPELP 577
                 GK S  V DI+ WMG F +  ++ K  +RMGQCF+    TV++      V+P++ 
Sbjct: 783  VDPISGKVSGTVEDIRVWMGDFREAVSVPKMMSRMGQCFTQAQPTVKLARHHWLVEPDME 842

Query: 578  DIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGI 637
                N + FSDG G+I+  LA ++ +KLKL     P  +Q+R+ G KG++   P   D I
Sbjct: 843  GGPGNKFCFSDGCGRISYKLAGQITRKLKL--KEIPACFQVRFKGFKGILVIDPTIDDII 900

Query: 638  RMS---LRESMNKF-----QSHHTTLEICSWTRFQPGFLNRQIITLLSTLN--------- 680
             M     R+S  KF          +LE+  +    P  LNR  +T+L  ++         
Sbjct: 901  NMPKVIFRKSQQKFGEGGGDQQDESLEVVKYAMPSPVCLNRPFVTILDQVSKKQSAKCHQ 960

Query: 681  -VPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLR 739
             + + + + ++   LS L+ ML++ + A E L        +       AGF    +P +R
Sbjct: 961  RITNRVHYYLERE-LSSLSNMLLNENQAAEELVNRTNLPIDWNLASKRAGFQLSVDPLIR 1019

Query: 740  GMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSK 797
             ML  I    +     KA+IF+P   GR + G +DE G+L+ GQ FIQ S          
Sbjct: 1020 SMLFAIYRYNIIHHISKAKIFLPPSLGRSMYGVVDETGLLQYGQVFIQYS---------- 1069

Query: 798  HGSRFAETKKLQVIK-GFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPH 856
                  +T    ++K G V+I KNPC  PGD+R+ +AV  P L HL D +VFP+ G RPH
Sbjct: 1070 --PTIRQTSPEPLLKTGKVLITKNPCHVPGDVRVFDAVWQPALAHLVDVVVFPRHGPRPH 1127

Query: 857  TNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHM 916
             +E +GSDLDGD Y + WD+ ++    ++   M + +++A+   +     D++EFF ++M
Sbjct: 1128 PDEMAGSDLDGDEYSIIWDQEMLLDYNET--AMVFPSSQAQEEDKEPTTDDMVEFFLRYM 1185

Query: 917  VNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG-KIVTMPAHLKPKLY 975
              +++G + NAH+V+AD   +G   ENC  +A+  A AVDFPK+G     +    +  + 
Sbjct: 1186 QQDSIGRMSNAHLVYADL--HGLFSENCASIAQKCAVAVDFPKSGVPAEPLTGFEQCDVT 1243

Query: 976  PDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDF 1035
            PD+M       Y S  + G+L+R+++    E++    E   +  +  YD  +  P+  D 
Sbjct: 1244 PDYMMSGGKPMYYSASLNGQLHRKARKV--EEVLEEYESKGSIFEGEYDK-MICPDDADV 1300

Query: 1036 -------IADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPK-----------YN 1077
                   +    N +  Y  ++  LL++Y +  E  +V+GH  S+ +           Y+
Sbjct: 1301 FFGSEPKLVQTMNIRDEYIDRMQQLLDEYGIEDEASVVSGHAASIKRLAGMERDDYSFYH 1360

Query: 1078 SRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNA------LFERKASAWYQ 1131
            + K  EL  R +  YS  R +F   FE+   +      D K +          K   WY 
Sbjct: 1361 TDKVVEL--RYEKLYSVFRAKF---FEEFGGEEAHTVNDGKGSRVVCIPAMHEKVRQWYF 1415

Query: 1132 VTY-HPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKP 1185
              Y  P          +++     +  S  W+A D L    +R   M  ID + P
Sbjct: 1416 AAYVQP----------KKNKTGKYIGQSLPWVAWDVLC--DLRRTLMLQIDDAIP 1458


>gi|312082346|ref|XP_003143407.1| RNA dependent RNA polymerase [Loa loa]
          Length = 1312

 Score =  302 bits (774), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 250/844 (29%), Positives = 392/844 (46%), Gaps = 137/844 (16%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDE-GLQTMNANVLSYFIAP 471
            VR+ VITPT+   + PE+ + NRVLR++ +  DR LR+ F D+ G       V SY I  
Sbjct: 222  VRKAVITPTRMLLVVPELLMGNRVLREFDEHGDRALRIQFRDDDGTHLRRNKVGSYIIET 281

Query: 472  IVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTS 531
             V +  L+                  G Y+    F +LA S+SQ+RD   +FF++     
Sbjct: 282  TVHNCLLH------------------GIYISNSHFVYLASSNSQMRDNGCYFFNDGDDGR 323

Query: 532  VLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG------YV 585
            V  I++ +G+F   NI K  +RMGQCF+ +  +  V   +   +  D+          ++
Sbjct: 324  VGKIREKLGKFDRTNIPKLMSRMGQCFTQSKESDVVLKRKKYNKTYDVIGGKDSCGEPFI 383

Query: 586  FSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPA------------- 632
            FSDG+GK++ D A  +A+ L L+   P C +Q R  G KGV++  PA             
Sbjct: 384  FSDGVGKLSEDFAERIAKDLGLNKCVPSC-FQFRLRGLKGVLSVDPALRQRRLWAECNDV 442

Query: 633  --------KGDGIRMSLRESMNKFQS-HHTTLEICSWTRFQPGFLNRQIITLLSTLNVPD 683
                    K + + +  R S +KF +     +EI  ++   P  LNR  I +L  ++   
Sbjct: 443  EDKNRKTEKVNDLDVLFRPSQDKFHAPRKEMIEIVKYSSPTPVCLNRPFINILDQVSDMQ 502

Query: 684  ---------EMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQT 734
                          + D  L +L+  L+  +   E L A    + N   + L+ GF    
Sbjct: 503  GFDVHRRIVHRIHGLLDRQLLQLSDALMSENKCRERL-AEFPRRINVQYLSLARGFTLTQ 561

Query: 735  EPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPFLG 792
            EP  RG+L       L     K +I +PA  GR + G LDE G+L+ GQ F+Q    F  
Sbjct: 562  EPFFRGLLIASVRFTLQKQLFKEQIQIPANLGRTMFGILDETGLLQYGQVFVQ----FTN 617

Query: 793  NCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKG 852
            N   K  S+ A      ++KG V+I KNP +  GD+R+ EA+D PEL HL D +VFPQ G
Sbjct: 618  NVSLKTPSKAAAKT---IVKGPVLITKNPSIVAGDVRVFEAIDLPELRHLVDVVVFPQHG 674

Query: 853  DRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQ------- 905
             RPHT+E +GSDLDGD Y V WD+ ++    +   PM+++      L RP D        
Sbjct: 675  PRPHTDEMAGSDLDGDEYSVIWDDQMLFDHNEE--PMDFSK-----LVRPPDLLEEDEVV 727

Query: 906  RDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKT----- 960
            R++  F+ K+++ +++G I NA + ++D   +G   + C  +AE  + +VDFPKT     
Sbjct: 728  REMRRFYVKYIMQDSVGVIANAFLANSDM--FGIASDICTSIAEKHSQSVDFPKTGWPPR 785

Query: 961  -----------GKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDIS 1009
                       GKI  MP   +P+ +PDFM K    SY S +++G+L+R+ +  +  D+ 
Sbjct: 786  PLVKEWSKGPDGKI--MPPE-RPERWPDFMCKTHEPSYVSTRLVGQLFRRIRLVH--DVL 840

Query: 1010 VSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGH 1069
              + V      I  D  LE      +  +A     +Y   +  L++ Y +  E +L +G 
Sbjct: 841  TITAVSEGHSQIVVDPLLEYHGWESYENNANLNLIAYSAHIKALMDNYGIEDEYQLFSGC 900

Query: 1070 IWSMPKYNSRKQGE----------LKERLKHSYSALRKEFRQVFEKMDS----DCELLSE 1115
               +    S +  +          ++++L + + + R  F   F    S    D +  S+
Sbjct: 901  FSKIRNRISDRDTDDMSQFNTNFFIEQKLTNIFMSFRSSFFAEFGDFMSCTEPDDDFHSK 960

Query: 1116 DEKNALF--------ERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYL 1167
            D     +        ++KASA+Y V Y     K    + E+       LLSF WIA D L
Sbjct: 961  DMTERRYCKCPTMEMKKKASAYYIVCYR----KAVNGIGER-------LLSFPWIAWDIL 1009

Query: 1168 ARIK 1171
            A IK
Sbjct: 1010 AEIK 1013


>gi|384495849|gb|EIE86340.1| hypothetical protein RO3G_11051 [Rhizopus delemar RA 99-880]
          Length = 1099

 Score =  302 bits (773), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 187/551 (33%), Positives = 292/551 (52%), Gaps = 37/551 (6%)

Query: 327  GISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKR 386
            G+ F+ ++ + + +    +N + L  +F+  L+          L+ +   K  ++D    
Sbjct: 579  GLDFDTLYSLESAISYNFLNVYNLDRTFYQALKALECSAVREYLEMVVIRKTRLWDPLAD 638

Query: 387  LKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADR 446
            L   Q+ L     ++K P +      V +++ITPT  +  P  +E+ NRVLR ++D  DR
Sbjct: 639  LSDQQKRL---GAIHKVPSRC---FLVNKVIITPTSVFIEPRSLEVGNRVLRHFQDHIDR 692

Query: 447  FLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKF 506
            FLRV F+D+G   + A             +          ++ R+R +   G  +  R +
Sbjct: 693  FLRVQFLDDGFNRVCA-------------VRKPGDRMNEALYVRIRKLFDQGLQIGDRYY 739

Query: 507  SFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFT-DKNIAKCAARMGQCFSSTYATV 565
             FLA+SSSQLR+   WFF+     +   I++WMG F+ +K ++K AARMGQCFSS+ A  
Sbjct: 740  EFLAYSSSQLREHGCWFFASGKDLTAEMIRRWMGDFSREKVVSKYAARMGQCFSSSVAIC 799

Query: 566  EVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKG 625
                 EV+  +PD+K NGY+FSDG+GK++  LA +   ++ L V+P   A Q+R  G KG
Sbjct: 800  SFHADEVE-TIPDMKHNGYIFSDGVGKMSLALAKKTRNQMNLGVDP--SALQVRLGGSKG 856

Query: 626  VVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEM 685
            V+A  P    G+ + LR S  KF + H  LE+     ++ G+LNRQII L+S L V D  
Sbjct: 857  VLAVDPNLPKGVHVQLRPSQIKFDTDHLELEVVKIATYRNGYLNRQIIILMSALGVRDAY 916

Query: 686  FWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIM--LSAGFNPQTEPHLRGMLT 743
               + ++ML    ++L D   A   L+    + G +  ++  + AGF    +P+++ +L 
Sbjct: 917  VLELVNTMLQNTEKILTDPLEALYALSPRSDDFGTSNMLVNAIQAGFLKSGDPYIQNILV 976

Query: 744  CIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFA 803
              R + L  L++KA++ VP    L+G +DE G+LE  + F+QV +              A
Sbjct: 977  LFRCSLLKELKKKAKVLVPKSACLIGVVDETGLLESNEVFVQVWD------------NSA 1024

Query: 804  ETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGS 863
                 QVI   V I +NP LHPGD+R+L+AVD PELHHL + +VF  KG+R   +  SG 
Sbjct: 1025 TGNINQVITDRVSIFRNPSLHPGDLRVLQAVDIPELHHLKNVVVFSSKGERDVPSMCSGG 1084

Query: 864  DLDGDLYFVTW 874
            DLDGD Y   W
Sbjct: 1085 DLDGDEYTYEW 1095


>gi|326484092|gb|EGE08102.1| RNA-dependent RNA polymerase [Trichophyton equinum CBS 127.97]
          Length = 1207

 Score =  301 bits (772), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 252/832 (30%), Positives = 369/832 (44%), Gaps = 136/832 (16%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V V R  +TP   Y   P  E  NR+LRKY D  D F+RV F+DE               
Sbjct: 416  VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGD------------ 463

Query: 471  PIVRDITLNSFSQKTRVF-KRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS--ED 527
            P+  D + N      ++F +R   ++  GF + GR+F FL FS S LR  + WF +    
Sbjct: 464  PVFFDPSANL----EQIFHQRFAGVMKRGFEIAGREFEFLGFSHSSLRAQTCWFAAPFTT 519

Query: 528  GKTSVLDIKKWMGRFT----DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG 583
                 L+ +  +G        ++ +K AAR+GQ FS T  ++ V    V  + PD+KRN 
Sbjct: 520  ANGDHLNARTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMKAPDVKRND 579

Query: 584  YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRE 643
             +FSDG+G I+ DL   +  +  L     P  +QIR AG KG+V+    +  G  + LRE
Sbjct: 580  RIFSDGVGVISRDLMYRIWNEYALRERVKPTVFQIRIAGAKGMVSL-DTRRKGEFLMLRE 638

Query: 644  SMNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
            SM KF +     +EIC +  R  P +LN QII +L  L VP E F  +Q   ++ L    
Sbjct: 639  SMVKFPTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQIQQDEINFLYSTF 698

Query: 702  VDSDVAFEVLTAACAEQGNTAA----IMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKA 757
              ++ A + L  +   +         ++   G     +P L+ ++      +L  L+ +A
Sbjct: 699  NSTERAAKFLEDSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRA 758

Query: 758  RIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVI 817
            RI VP    L G +DE G L+  + +      +LG    ++G R        +++  VVI
Sbjct: 759  RIRVPNAVTLYGIMDETGYLKENEIYCV----YLG----ENGRREI------LVRDKVVI 804

Query: 818  AKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTW 874
             ++P LHPGDI+++ AVD PE   L  L++C+ F Q GDR   +  SG DLDGDLY + +
Sbjct: 805  TRSPALHPGDIQVVNAVDVPENSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIY 864

Query: 875  DENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADH 934
            D  L+P  +K+ PP  Y   EAK L R V+  DI++FF   M  + LG I   H   AD 
Sbjct: 865  DTRLVP--RKTIPPANYPRVEAKELDRKVETEDIVDFFVTFMQQDQLGRIATTHQTIADQ 922

Query: 935  SEYGALDENCILLAELAATAVDFPKTG---KIVTMPAHLKPKLYPDFMG----------- 980
            SE G LD+ C+ LA L + AVD+ K+G    ++++P    P++ PDFM            
Sbjct: 923  SELGTLDQACLKLAHLHSVAVDYSKSGIAVNVLSIPR--APRVRPDFMAPSPRFRVADSI 980

Query: 981  -----------------------KEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDIN 1017
                                   +   + YKSN ILGRLYR    + DE   +    D+ 
Sbjct: 981  ESIIGEKNSAMQDDDDDDEDDSDRRKIRYYKSNNILGRLYR----SIDERSFLCQLRDVG 1036

Query: 1018 PVDIHYDTDLEVPESVDFIADAWNQKCS--------------------YDGQLNGLLEQY 1057
              D   +TD+        +   WN   S                    Y+ +L  L+ +Y
Sbjct: 1037 AADTKTNTDV--------LRSIWNYVLSEVDGFLWTHLTGIFHDTRDIYEDELRELMRKY 1088

Query: 1058 KVN------REEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCE 1111
                      E EL  G I      +  KQ   + R K +   +R E+ ++ E   S   
Sbjct: 1089 SATPLKSSITEYELFVGTILG----HGNKQ---RRRDKDNAKEMRDEYNRLVEFTISMIR 1141

Query: 1112 LLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIA 1163
                    AL    A  W  +       K  L       A    LLSF WIA
Sbjct: 1142 DTESGGTEALERSIACFWVAIDGKSSGQKPGL---RSAHAHQDKLLSFPWIA 1190


>gi|315045169|ref|XP_003171960.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
 gi|311344303|gb|EFR03506.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
          Length = 1204

 Score =  301 bits (772), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 252/816 (30%), Positives = 363/816 (44%), Gaps = 107/816 (13%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V V R ++TP   Y   P  E  NR+LRKY D  D F+RV F+DE               
Sbjct: 416  VLVHRAMVTPCGIYLSGPYTETKNRILRKYLDNIDYFIRVEFLDETGD------------ 463

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS--EDG 528
            P+  D + N    ++   +R   ++  G  + GR F +L FS S LR  + WF +     
Sbjct: 464  PVFFDPSAN---LESIFHQRFAGVMKRGIEIAGRVFEYLGFSHSSLRSQTCWFAAPFTTA 520

Query: 529  KTSVLDIKKWMGRFTD----KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGY 584
                LD K  +G        ++ +K AAR+GQ FS T  ++ V    V  + PD+KRNG 
Sbjct: 521  NGDYLDAKTIIGNIGHFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVKMKAPDVKRNGR 580

Query: 585  VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
            VFSDG+G I+ +L   +  +  L     P  +QIR AG KG+V+    +  G  + LRES
Sbjct: 581  VFSDGVGVISRELMYRIWNEYALRERVKPTVFQIRIAGAKGMVSL-DTRKKGEFLMLRES 639

Query: 645  MNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLV 702
            M KF +     +EIC +  R  P +LN QII +L  L VP E F  +Q   +S L     
Sbjct: 640  MVKFPTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQQDEISFLYSTFS 699

Query: 703  DSDVAFEVLTAACAEQGNTAAIML----SAGFNPQTEPHLRGMLTCIRAAQLWGLREKAR 758
              + A   L  +   +      +L    S G     +P L+ ++      +L  L+ +AR
Sbjct: 700  SIERAANFLEESPVPRSLRLPWLLLVLKSLGIRYSQDPFLQRVMELTMLLRLRDLKYRAR 759

Query: 759  IFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV-IKGFVVI 817
            I VP    L G +DE G L+  + +          C        AE  + ++ ++  VVI
Sbjct: 760  IRVPNAVTLYGIMDETGYLKENEIY----------CVY-----LAENGRREILVRDNVVI 804

Query: 818  AKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTW 874
             ++P LHPGD+++  AVD P    L  L++C+ F Q G R   +  SG DLDGDLY + +
Sbjct: 805  TRSPALHPGDVQVANAVDVPANSPLRKLHNCVAFSQFGTRDLPSMLSGGDLDGDLYNIIY 864

Query: 875  DENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADH 934
            D  L+P  +K++ P +Y  AEAK L R V+  DII+FF   M  + LG I   H   AD 
Sbjct: 865  DTRLLP--QKTFSPADYPRAEAKELDRKVETEDIIDFFVTFMQQDQLGRIAITHQAIADQ 922

Query: 935  SEYGALDENCILLAELAATAVDFPKTGKIV-TMPAHLKPKLYPDFMG------------- 980
            SE G LD  C+ LA L +TAVD+ K+G  V  M     P++ PDFM              
Sbjct: 923  SERGTLDGVCLTLARLHSTAVDYSKSGIAVDVMSIPKAPRVRPDFMAPSPRIRVEDSIES 982

Query: 981  ------------------KEAYQSYKSNKILGRLYRQ-SKDAYDEDISVSSEVDINPVDI 1021
                              +   + YKS+ ILGRLYR   + ++   +  +  VD N  + 
Sbjct: 983  ILREKESTVQDDDDDDNDRAKIRYYKSHNILGRLYRSIDEQSFLHQLRDAGAVDNNNRNS 1042

Query: 1022 HYDTDLEVPESVDFIADAWNQ--------KCSYDGQLNGLLEQYKVN------REEELVT 1067
               +     ES +     WN         K  Y+ +L  LL +Y          E EL  
Sbjct: 1043 VLKSIWRYVES-EVDGFLWNHLTGICHDIKDIYEDKLRELLHKYSSTPLKSSISEYELFV 1101

Query: 1068 GHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKAS 1127
            G I      +  KQ   + R K + + +R E+ ++ E   S           AL    A 
Sbjct: 1102 GTILG----HGHKQ---RRRDKENANEMRDEYNRLVEFTISMIRDTESGGTEALERSIAC 1154

Query: 1128 AWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIA 1163
             W  +       K  L        +   LLSF WIA
Sbjct: 1155 FWVAINEQSAGQKAGLRSAHTHQEK---LLSFPWIA 1187


>gi|324500457|gb|ADY40216.1| RNA-dependent RNA polymerase RRF-3 [Ascaris suum]
 gi|333440982|gb|AEF32766.1| RdRP3 [Ascaris suum]
          Length = 1640

 Score =  301 bits (770), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 241/826 (29%), Positives = 395/826 (47%), Gaps = 115/826 (13%)

Query: 409  DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYF 468
            + V +R+++ TP +   +PPEV ++NRV+R + +  +  LR  F D+  Q +        
Sbjct: 561  NCVLIRKVMATPLRLILMPPEVMMTNRVVRHFGE--EYALRCVFRDDNGQRL-------- 610

Query: 469  IAPIVRDITLN-SFSQKTRVFKR-VRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE 526
               +V D T   +  +++ + +R V   LS G ++  R + FLA+S+SQ+RD   + +S 
Sbjct: 611  ---VVNDFTRGRAVQEQSLIIQRLVYKTLSEGIHIASRHYKFLAWSNSQMRDHGCYMYSA 667

Query: 527  -------DGKTSVL---DIKKWMGRFT-DKNIAKCAARMGQCFSSTYATVEVPPTEVDPE 575
                    GK  +    DI++WMG FT  KN+ K  +RMGQCF+    T+ +   +   E
Sbjct: 668  TKVIDDVSGKERIYEIEDIRRWMGDFTASKNVPKLMSRMGQCFTQAQPTIVLERKDWRME 727

Query: 576  ------LPDIKRNG-YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVA 628
                  LP  +    + FSDG G+I+   A  VA KL  D+ PPP  +Q+R+ G KGV+ 
Sbjct: 728  EDIVGGLPHPETGELFNFSDGAGRISAKYASLVAAKL--DLRPPPSCFQVRFKGFKGVLC 785

Query: 629  CWPAKG--DGIRMSLRESMNKFQ---SHHTTLEICSWTRFQPGF--LNRQIITLLSTLN- 680
              P+    +   +  R S  KF+   S    LE+   +   P F  L+R +I +L  ++ 
Sbjct: 786  VDPSLDLENKENVVFRRSQKKFEEDESEAAELEVVKHS--MPSFVCLSRPLIMILDQVSE 843

Query: 681  -----VPDEMFWSMQ---DSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNP 732
                 +   + W +    +  L+ L +ML+D +VA E L++  +   +   +   +GF  
Sbjct: 844  RQNRELHQRLCWRIHCLLEKELNTLAEMLLDEEVAAEALSSRLSLSIDFRQLH-DSGFTF 902

Query: 733  QTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPF 790
              EP  R +L  +    +     K +IF+P   GR + G +D+ GVL+ GQ F+Q S   
Sbjct: 903  TNEPFFRSLLVAVHHYNIKQHLSKLKIFLPGSMGRTMYGVIDDTGVLQYGQVFVQYSP-- 960

Query: 791  LGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQ 850
                     S    +KK+    G V++ KNPCL  GD+R+  AV    L HL D +VFP+
Sbjct: 961  ---------SVRTPSKKVITHVGPVLVTKNPCLVGGDVRMFTAVYQSSLSHLRDVIVFPR 1011

Query: 851  KGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIE 910
             G RPHT+E +GSDLDGD Y V +D++L     +    M +    A     P    D+I+
Sbjct: 1012 YGPRPHTDEMAGSDLDGDEYIVIFDKDLFLDHNEE--AMHFPKPVASDYDTPPTAEDMID 1069

Query: 911  FFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT-MPAH 969
            FF K++  +++G + NAH++ +D    G   E C  +A   + AVDFPK+G+    + + 
Sbjct: 1070 FFLKYLSQDSIGRMSNAHLIMSD--RLGLFHEICDGIARKCSIAVDFPKSGEPAEPLSSF 1127

Query: 970  LKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEV 1029
             +  + PDFM K    SY+S++++GRLYR+ K   +    +     + P    +D  L  
Sbjct: 1128 EQSDIVPDFMQKSFRPSYRSHRLVGRLYRKVKKVEN----IVELAQMIPFTDTFDPQLYD 1183

Query: 1030 PESVD----FIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGH------IWSMPK---- 1075
                D     + ++ + +  Y+ ++  L+++Y +  E  +V+GH      I  M K    
Sbjct: 1184 ESLFDTHPCLVRNSIHLRNQYNAKVQQLMDEYGITDEASVVSGHSVTIRRITDMEKDDYS 1243

Query: 1076 -YNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSED-------EKNALFERKAS 1127
             Y+S +  E+  R    Y + R+EF   F +   + + ++ D         N+    KA 
Sbjct: 1244 YYHSDRIVEM--RYSRIYESFRREF---FMEFGEESDFITVDAFGQRGIRWNSALITKAK 1298

Query: 1128 AWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIR 1173
             WY V Y    +  S               SF WI  D L  +K R
Sbjct: 1299 VWYAVCYGKRAMCPS------------KFRSFPWIVWDLLLIVKRR 1332


>gi|341891713|gb|EGT47648.1| hypothetical protein CAEBREN_06166 [Caenorhabditis brenneri]
          Length = 1640

 Score =  301 bits (770), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 253/880 (28%), Positives = 406/880 (46%), Gaps = 167/880 (18%)

Query: 405  KQIDDIVE-VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNAN 463
            K+I D  + VR++V TPT+   + PE  + NRVLR++     + LR+TF D+    M  N
Sbjct: 479  KEIHDGFQIVRKVVFTPTRVIYVAPEAIMGNRVLRRFDKDGTKVLRITFRDDNNGKMRTN 538

Query: 464  VLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF 523
                 +     + T N F ++             G  +  R F FL  S+SQ+RD  A+F
Sbjct: 539  TTEELL-----EKTANKFFRE-------------GVRVANRDFGFLGCSNSQMRDSGAYF 580

Query: 524  FSE----------------------DGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSS 560
              +                      + K  + +++  +G+F++ +N+ K  ARMGQCF+ 
Sbjct: 581  MLKATPSQLERFYRKNPRATREQLLNYKPLIDEVRLNLGKFSEVENVPKMIARMGQCFTQ 640

Query: 561  TYATVEVPPTEVDPELPDI------KRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPC 614
            +  T      +   ++ D       K+  Y FSDG+G ++   A  +AQ +  D + P C
Sbjct: 641  SRLTGVALERKNYCKIFDYEGGKNSKQATYTFSDGVGMMSCRFAKIMAQSMNYDRSVPSC 700

Query: 615  AYQIRYAGCKGVVACWPAKGD---------------GIRMSLRESMNKFQSHHT---TLE 656
             +QIR+ G KGV+A  P   D                I ++ R S  KFQ+ H     +E
Sbjct: 701  -FQIRFRGNKGVIAMEPQLDDLRNWAIRHALEEIIPEINVAFRPSQIKFQAKHIEGDQIE 759

Query: 657  ICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACA 716
            +       P  LN+ +I +L    V +         M+S++ + L+D  V       + A
Sbjct: 760  MVKPAGPVPVSLNKPLINILD--QVSEMQGVVCHKRMVSRIEE-LMDRQVQ------SFA 810

Query: 717  EQGNTAA-----------------IMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARI 759
            +Q N                    +  + GF    EP  R ++       +     K +I
Sbjct: 811  KQMNDETYCRNRLKEFPRRVDIDYLRTTWGFTLSREPFFRSLIKAAIKFSITKQLRKEQI 870

Query: 760  FVPA--GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAE--TKKLQVIKGFV 815
             +P   GR L G +DE G L+ GQ F+Q S     N  +KH  R A+   +   V+ G +
Sbjct: 871  QIPKELGRTLFGVVDETGRLQYGQVFVQYS----SNILNKHPVRLADQSVQNGVVVTGKI 926

Query: 816  VIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 875
            +I+KNPC+ PGD+RI EAVD PELHH+ D +VFPQ G RPH +E +GSDLDGD Y V WD
Sbjct: 927  LISKNPCIVPGDVRIFEAVDIPELHHMCDVVVFPQAGPRPHPDEMAGSDLDGDEYSVIWD 986

Query: 876  ENLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDII-EFFAKHMVNENLGTICNAHVVHA 932
              ++      W  P  +++  + +    P +  +++ EF+ +++  +++G I NAH+ ++
Sbjct: 987  PQML----LEWNEPAFDFSVEKQRIEWDPNEVDNLMREFYVQYLKLDSVGQISNAHLHNS 1042

Query: 933  DHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHL-----------------KPKLY 975
            D  +YG +   C+ LA+  + AVDF K+G     PA +                  P+  
Sbjct: 1043 D--QYGLMSTVCMNLAKKNSQAVDFTKSG---IPPADMTRKWEKDPITDEMVPPENPERI 1097

Query: 976  PDF-MGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVD 1034
            PDF MG E    Y S ++ GRL+R+ + A D  I +S E D    DI  D D+ +     
Sbjct: 1098 PDFHMGNERNPQYVSPRLCGRLFREFQ-AIDNVIKISEEKD-ELYDIEIDEDIMIYGYER 1155

Query: 1035 FIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGE----------L 1084
            F+ +A  +  +Y+GQL  ++E Y +  E E+++G I  M    S K  +          +
Sbjct: 1156 FMVEARTELANYNGQLRSIMETYGIATEGEIMSGCIIEMRNRISDKDQDDMSFFNTNLMI 1215

Query: 1085 KERLKHSYSALRKEFRQVFEKMDSDCELL-SEDEKNAL------------FERKASAWYQ 1131
            + R+       R++F + F    S C ++ + DE N+               +KA AWY+
Sbjct: 1216 ETRVTTLICRFREKFFEPFGGYQSCCSIIENADENNSTCLAYRCRSATNSMMQKAVAWYR 1275

Query: 1132 VTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
              Y  E+ +         S R    LSFAWI  D +A+++
Sbjct: 1276 ACY--EFAQ---------SNRETRKLSFAWIVYDVIAKVR 1304


>gi|392890785|ref|NP_495713.2| Protein RRF-3 [Caenorhabditis elegans]
 gi|316979926|emb|CAA88315.2| Protein RRF-3 [Caenorhabditis elegans]
          Length = 1765

 Score =  300 bits (769), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 233/818 (28%), Positives = 387/818 (47%), Gaps = 106/818 (12%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V V ++++TP++   + PEV + NRV+R++    D  LR  F D+ L  +          
Sbjct: 677  VSVAKVIVTPSRILLMAPEVMMVNRVVRRFG--PDYALRCVFRDDNLGRL---------- 724

Query: 471  PIVRDITLNSFSQKTRVFKR-VRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE--- 526
              +RD ++N+    + +    +   L  G  +  R +SFL +S+SQ+RD   + ++    
Sbjct: 725  -AIRDFSINNIDHMSNIVTEGIYLTLKNGIQVADRVYSFLGWSNSQMRDQGCYLYAPRVN 783

Query: 527  ----DGKTSVLDIKKWMGRFTDK-NIAKCAARMGQCFSSTYATVEVPPTE--VDPELPDI 579
                +   +V DI+ WMG F D  ++ K  +RMGQCF+    TV +      V+P++   
Sbjct: 784  ALTGEVTGTVEDIRVWMGDFRDAISVPKMMSRMGQCFTQAQPTVRLERHHWIVEPDIEGG 843

Query: 580  KRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRM 639
              N Y FSDG G+I+  LA  +++ L+L     P  +Q+R+ G KG++   P   D I M
Sbjct: 844  VENKYCFSDGCGRISIKLATHISKILQL--KEVPACFQVRFKGFKGILVIDPTIDDIINM 901

Query: 640  S---LRESMNKF-----QSHHTTLEICSWTRFQPGFLNRQIITLLSTLN----------V 681
                 R+S  KF     +     LE+  +    P  LNR  IT+L  ++          +
Sbjct: 902  PKVIFRKSQQKFGEGGGELQDEYLEVVKYAMPSPVCLNRPFITILDQVSEKQSASSHRRI 961

Query: 682  PDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGM 741
             + + + ++  + S L+ ML++ + A E L        +  A    AGF    +P +R M
Sbjct: 962  TNRVHYYLERELCS-LSNMLINENQAAEELVNRTNLAIDWNAASKRAGFELSVDPLIRDM 1020

Query: 742  LTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHG 799
            L  I    +     KA+IF+P   GR + G +DE G+L+ GQ FIQ S            
Sbjct: 1021 LFSIYRYNIIHHISKAKIFLPPSLGRSMYGVVDETGLLQYGQVFIQYS------------ 1068

Query: 800  SRFAETKKLQVIK-GFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTN 858
                +T    ++K G V+I KNPC  PGD+R+ +AV  P L HL D +VFPQ G RPH +
Sbjct: 1069 PSIRQTSNRPILKTGKVLITKNPCHVPGDVRVFDAVWQPALAHLVDVVVFPQHGPRPHPD 1128

Query: 859  EASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVN 918
            E +GSDLDGD Y + WD+ ++    +    M + ++ A    +     D++EFF +++  
Sbjct: 1129 EMAGSDLDGDEYSIIWDQEMLLDYNEE--AMVFPSSSAAEEDKEPTTDDMVEFFLRYLQQ 1186

Query: 919  ENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT-MPAHLKPKLYPD 977
            +++G + +AH+ +AD   +G   ENC  +A   A AVDFPK+G     + +  + ++ PD
Sbjct: 1187 DSIGRMSHAHLAYADL--HGLFHENCHAIALKCAVAVDFPKSGVPAEPLSSFEQCEMTPD 1244

Query: 978  FMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDF-- 1035
            +M       Y S ++ G+L+R+++    E++    E   +  +  YD  L  PE VD   
Sbjct: 1245 YMMSGGKPMYYSTRLNGQLHRKARKV--EEVLEEFETRGSVFEREYDK-LICPEDVDVFF 1301

Query: 1036 -----IADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPK-----------YNSR 1079
                 +      +  Y  ++  LL++Y +  E  +V+GH  S+ +           Y++ 
Sbjct: 1302 GNEIKLVQTLTLRDEYVDRMQQLLDEYGIEDEASVVSGHAASIKRLAGMERDDYSFYHTD 1361

Query: 1080 KQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFE------RKASAWYQVT 1133
            K  EL  R +  Y+  R +F   FE+   +   +  D KN   +       K   WY V 
Sbjct: 1362 KVVEL--RYEKLYAVFRAKF---FEEFGGEEINIENDGKNTRLKCTKAMHEKIRQWYFVA 1416

Query: 1134 YHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
            Y    + K         A   +  S  W+A D L  ++
Sbjct: 1417 YVQPKINK---------AGRCIGQSLPWVAWDALCDLR 1445


>gi|226291786|gb|EEH47214.1| predicted protein [Paracoccidioides brasiliensis Pb18]
          Length = 1257

 Score =  299 bits (765), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 232/793 (29%), Positives = 354/793 (44%), Gaps = 157/793 (19%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            + F + + +   +    +N++ +   F D L        +  L ++YS K   +D     
Sbjct: 321  LEFAVRYYLEVCISYRYLNEYAIKKKFVDELARIGERKAIYLLGYVYSNKIAYYDPMDIF 380

Query: 388  KLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRF 447
             +            + P        +R   +TP+  Y  PP ++  NR+ R+Y + ADRF
Sbjct: 381  NIRVPNFSDRANNTRTPV---GYYYMRSAEVTPSTIYYKPPSIDTGNRIFRRYLEYADRF 437

Query: 448  LRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFS 507
            LRV F DE  + M   +  Y  A IV    +N       V+ RV   +  G  +  R + 
Sbjct: 438  LRVRFTDE--KNM-GKIFPYSNANIV---CMN------EVYTRVTLTMKNGITIGDRCYE 485

Query: 508  FLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEV 567
            FLAFS++QLR+ +A+FF+             +   T  NI +                  
Sbjct: 486  FLAFSNAQLREHAAYFFAS------------LPHLTAANILQIV---------------- 517

Query: 568  PPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV--NPPPCAYQIRYAGCKG 625
                   E+ DI+RNGY FSDG+G I+  LA  +  +  ++     PP  +Q R  GCK 
Sbjct: 518  -------EIDDIERNGYTFSDGVGLISKFLAQMIQSEFAIETLSGEPPSVFQFRLGGCK- 569

Query: 626  VVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEM 685
                                    + H  LEI   + F    LNRQ+I +LS+L +PDEM
Sbjct: 570  ------------------------APHNGLEIIRHSSFCFASLNRQLIIVLSSLGIPDEM 605

Query: 686  FWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCI 745
            F     +ML  L   +   + A ++L                               T +
Sbjct: 606  FVKKLQAMLENLELAMTSQEQAIDLLQ------------------------------TYV 635

Query: 746  RAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSK-------- 797
               Q+        +    G +L+GCLDE G L+G   + +   P  G  + +        
Sbjct: 636  DPNQM------TLVLADMGAFLLGCLDETGSLKG---YFRSKRPGGGATYEQKLDCLPEI 686

Query: 798  --HGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRP 855
                SR +E    +VI+G  ++A+NP LHPGDIR+++AVD P LHHL D +V PQ GDR 
Sbjct: 687  FVQISRHSE-GTYEVIEGLCILARNPSLHPGDIRVVKAVDIPGLHHLKDVVVLPQTGDRD 745

Query: 856  HTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIEFFA 913
              +  SG DLDGD Y V WD++L+P   K W   PM+Y+A ++K L R V   DII+FF 
Sbjct: 746  IASMCSGGDLDGDDYVVIWDQDLLP---KDWFEEPMDYSAPKSKVLDRDVTVDDIIKFFV 802

Query: 914  KHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPK 973
             +M N+ L  I  AH+  AD+S+ G  DE C+ LA L + AVD+ K+G  V M   L+PK
Sbjct: 803  SYMQNDRLPQIALAHLTIADYSDDGVQDEKCLRLATLHSAAVDYNKSGIPVRMNQDLRPK 862

Query: 974  LYPDFMGKEAY---QSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIH-YDTDLEV 1029
             +P FM ++       Y S KILG+LY  +   Y    S S++  + P D    + + E+
Sbjct: 863  KWPHFMERKFAMKDSQYTSRKILGQLYDIAGGVYLNLQSHSAKGRL-PFDQRILNANFEI 921

Query: 1030 PESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLK 1089
             E +  ++ A   K  YD  L  ++ Q+++  E+                   +  E + 
Sbjct: 922  DEKL--LSFAKELKGEYDADLRRIMAQHEIQSEDY------------------KFHEEIG 961

Query: 1090 HSYSALRKEFRQV 1102
               SALR++FR +
Sbjct: 962  RISSALRQKFRML 974


>gi|308510538|ref|XP_003117452.1| CRE-RRF-3 protein [Caenorhabditis remanei]
 gi|308242366|gb|EFO86318.1| CRE-RRF-3 protein [Caenorhabditis remanei]
          Length = 1779

 Score =  298 bits (763), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 234/830 (28%), Positives = 396/830 (47%), Gaps = 115/830 (13%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V V +++++P++   + PEV + NR++R++    D  LR  F D+ L  +          
Sbjct: 676  VSVAKVIVSPSRVLLMAPEVMMVNRIVRRFG--PDYALRCVFRDDNLGRL---------- 723

Query: 471  PIVRDITLNSFSQKTRVF-KRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE--D 527
              +RD ++N+    + V  + + + L  G  +  R +SFL +S+SQ+RD   + ++   D
Sbjct: 724  -AIRDFSVNNIDHMSNVVTEAIYNTLKSGIKIADRVYSFLGWSNSQMRDQGCYLYAPRVD 782

Query: 528  GKT-----SVLDIKKWMGRFTDK-NIAKCAARMGQCFSSTYATVEVPPTE---------- 571
              T     +V DI+ WMG F D  ++ K  +RMGQCF+    TV V P            
Sbjct: 783  PITGAVTGTVEDIRIWMGDFRDAVSVPKMMSRMGQCFTQAQPTVRVSPILFQLNFLFQVK 842

Query: 572  -------VDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCK 624
                   V+P++     N + FSDG G+I+  LA  +++ L  D+   P  +Q+R+ G K
Sbjct: 843  LQRHHWIVEPDMEGGPDNKFCFSDGCGRISYKLAGHISKIL--DLKAIPACFQVRFKGFK 900

Query: 625  GVVACWPAKGDGIRMS---LRESMNKFQS-----HHTTLEICSWTRFQPGFLNRQIITLL 676
            G++   P   D + M     R+S  KF           LE+  +    P  LNR  IT+L
Sbjct: 901  GILVIDPTIDDIMNMPKVIFRKSQQKFGEGGGDLQDEYLEVVKYAMPSPVCLNRPFITIL 960

Query: 677  STLN----------VPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIML 726
              ++          +   + + ++  + S L+ ML++ + A E L        +      
Sbjct: 961  DQVSAKQSTASHRRITKRVHYYLERELCS-LSNMLLNENQAAEELVNRTNLPIDWNLASK 1019

Query: 727  SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFI 784
             AGF   T+P +R ML  I    +     KA+IF+P   GR + G +DE G+L+ GQ FI
Sbjct: 1020 RAGFQLSTDPLVRSMLFAIYRYNIIHHISKAKIFLPPNLGRSMYGVVDETGLLQYGQVFI 1079

Query: 785  QVSEPFLGNCFSKHGSRFAETKKLQVIK-GFVVIAKNPCLHPGDIRILEAVDHPELHHLY 843
            Q S                +T    ++K G V+I KNPC  PGD+R+ EAV  P L HL 
Sbjct: 1080 QYS------------PTIRQTSDTPILKTGKVLITKNPCHVPGDVRVFEAVWQPALAHLV 1127

Query: 844  DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPV 903
            D +VFP+ G RPH +E +GSDLDGD Y + WD++++    ++   M + ++ ++   +  
Sbjct: 1128 DVVVFPRHGPRPHPDEMAGSDLDGDEYSIIWDQDMLLDYNET--AMVFPSSSSQEEDKEP 1185

Query: 904  DQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG-K 962
               D++EFF +++  +++G + NAH+V+AD +  G   ENC  +A   A AVDFPK+G  
Sbjct: 1186 TTDDMVEFFLRYLQQDSIGRMSNAHLVYADLN--GLFHENCHSIALKCAVAVDFPKSGVP 1243

Query: 963  IVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIH 1022
               + +H +  + PD+M       Y S ++ G+L+R+++    E++    E   +  +  
Sbjct: 1244 AEPLTSHEQCDVTPDYMISGGKPMYYSARLNGQLHRKARKV--EEVLEEYESRGSIFEGE 1301

Query: 1023 YDTDLEVPESVDF-------IADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPK 1075
            YD  L  PE+VD        +      +  Y  ++  LL++Y +  E  +V+GH  S+ +
Sbjct: 1302 YDK-LICPENVDVFFGSESKLVQVMTLRDEYIDRMQQLLDEYGIEDEASVVSGHAASIKR 1360

Query: 1076 -----------YNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNA---L 1121
                       Y++ K  EL  R +  YS  R +F + F   +++     +D + A    
Sbjct: 1361 LAGMERDDYSFYHTDKVVEL--RYEKLYSVFRAKFFEEFGGEEANTVHDGKDTRVACTPA 1418

Query: 1122 FERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
               K   WY V Y        +  ++  + R  +  S  W+A D L  ++
Sbjct: 1419 MHEKIRQWYFVAY--------VQPKKNKTGR-YIGQSLPWVAWDVLCSLR 1459


>gi|327295881|ref|XP_003232635.1| hypothetical protein TERG_06627 [Trichophyton rubrum CBS 118892]
 gi|326464946|gb|EGD90399.1| hypothetical protein TERG_06627 [Trichophyton rubrum CBS 118892]
          Length = 1207

 Score =  296 bits (758), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 251/835 (30%), Positives = 365/835 (43%), Gaps = 142/835 (17%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTM----NANVLS 466
            V V R  +TP   Y   P  E  NR+LRKY D  D F+RV F+DE    +    +AN+  
Sbjct: 416  VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVFFDPHANLEP 475

Query: 467  YFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF--- 523
             F                    +R   ++  G  + GR F FL FS S LR  + WF   
Sbjct: 476  IF-------------------HQRFAGVMKRGIEIAGRGFEFLGFSHSSLRAQTCWFAAP 516

Query: 524  -FSEDGK-TSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK 580
              + DG   +   I   +G F   ++ +K AAR+GQ FS T  ++ V    V    PD+K
Sbjct: 517  FTTADGDYLNARTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVK 576

Query: 581  RNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMS 640
            RN  +FSDG+G ++ DL   +  +  L     P  +QIR AG KG+V+    +  G  + 
Sbjct: 577  RNDRIFSDGVGVMSRDLMYRIWNEYALREKVKPTVFQIRIAGAKGMVSL-DTRRKGEFLM 635

Query: 641  LRESMNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN 698
            LRESM KF +     +EIC +  R  P +LN QII +L  L VP E F  +Q   ++ L 
Sbjct: 636  LRESMVKFPTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQQDEINFLY 695

Query: 699  QMLVDSDVAFEVLTAACAEQGNTAA----IMLSAGFNPQTEPHLRGMLTCIRAAQLWGLR 754
                 ++ A + L  +   +         ++   G     +P L+ ++      +L  L+
Sbjct: 696  STFNSTERAAKFLEDSPVPRSLRLPWLFLVLKGLGIRYTRDPFLKRVMELTTLLRLRDLK 755

Query: 755  EKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGF 814
             +ARI VP    L G +DE G L+  + +      +LG             ++  +++  
Sbjct: 756  YRARIRVPNAVTLYGIMDETGYLKENEIYCV----YLGE----------NGRREILVRDN 801

Query: 815  VVIAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYF 871
            VVI ++P LHPGDI+++ AVD P    L  L++C+ F Q GDR   +  SG DLDGDLY 
Sbjct: 802  VVITRSPALHPGDIQVVNAVDVPANSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYN 861

Query: 872  VTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVH 931
            + +D  LIP  +K+ PP  Y   EAK L R V+  DII+FF   M  + LG I   H   
Sbjct: 862  IIYDTRLIP--RKTIPPANYPRVEAKELDRKVETEDIIDFFVTFMQQDQLGRIATTHQTI 919

Query: 932  ADHSEYGALDENCILLAELAATAVDFPKTG---KIVTMPAHLKPKLYPDFMGKE------ 982
            AD SE+G LD+ C+ LA L + AVD+ K+G    ++++P    P++ PDFM +       
Sbjct: 920  ADQSEFGTLDQACLKLAHLHSVAVDYSKSGIAVDVLSIPR--APRVRPDFMAQSPRFRVA 977

Query: 983  ----------------------------AYQSYKSNKILGRLYRQSKDAYDEDISVSSEV 1014
                                          + YKSN ILGRLYR    + DE   +    
Sbjct: 978  DSIESIIGEKKSTMQEDDDEDEDDSDRRRIRYYKSNNILGRLYR----SIDERSFLCQLR 1033

Query: 1015 DINPVDIHYDTDLEVPESVDFIADAWNQKCS--------------------YDGQLNGLL 1054
            D   VD + +T++        +   WN   S                    Y+ +L  L+
Sbjct: 1034 DAGAVDTNTNTNV--------LRSIWNYVLSEVDGFLWTHLTGIFHDTRDIYEDELRELM 1085

Query: 1055 EQYKVN------REEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDS 1108
             +Y          E EL  G I      +  KQ   + R K +   +R E+ ++ E   S
Sbjct: 1086 RKYSATPLKSSISEYELFVGTILG----HGHKQ---RRRDKDNAKEMRDEYNRLVEFTIS 1138

Query: 1109 DCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIA 1163
                       AL    A  W  +       K  L       A    LLSF WIA
Sbjct: 1139 MIRDTESGGTEALERSIACFWVAINGKSSGQKPGL---RSAHAHQEKLLSFPWIA 1190


>gi|134114255|ref|XP_774375.1| hypothetical protein CNBG3560 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50257010|gb|EAL19728.1| hypothetical protein CNBG3560 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1123

 Score =  296 bits (758), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 229/782 (29%), Positives = 377/782 (48%), Gaps = 82/782 (10%)

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
            +V +R +++TPT+    PP+ E SN V R+Y D  D  +RV F DE  +   A+ +    
Sbjct: 367  LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEEDRLFIADNMKL-- 424

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE--- 526
                    ++S +    +  RVR  L  G  + G  F  +A S+SQ ++ + WF +    
Sbjct: 425  --------IDSINPAVGIMARVRRALQFGLIIGGETFYPVASSASQQKEHAMWFINNKVI 476

Query: 527  DGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVF 586
            DG    L+++ WMG   +  +AK AARMG  FS++   +      +  ELPDI+RNG  F
Sbjct: 477  DG----LELRNWMGTVHETVVAKHAARMGLPFSTS--RIVNMKINIGEELPDIERNGRCF 530

Query: 587  SDGIGKITPDLAMEVAQKL--KLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
            +DG G    ++  + A  L  K+ +N  P A Q R  G KGV++ W    +   + LR S
Sbjct: 531  TDGCGIAGREVLNQAALALNEKVGINSQPSAIQFRLGGAKGVLSDWSQLVNEYEIRLRPS 590

Query: 645  MNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKL------- 697
            M KF+S    L +    ++Q  FLNRQ I ++    VP E+   + +  ++ +       
Sbjct: 591  MIKFKSDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRV 650

Query: 698  -NQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREK 756
             N  + ++D   + L A C +     A ++ +GFN    P L  +   I    L  L+ +
Sbjct: 651  WNNAVTEND---QQLIALCND--FPLAQLIKSGFN--ENPLLLDVAAIIECRALQDLKWR 703

Query: 757  ARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVV 816
            AR+ +  G +L+G  DE G L+ G+ F Q  E               +    +++   V+
Sbjct: 704  ARVKLLDGVYLIGIADETGTLKEGEVFCQFQE--------------NDESPPKIVVNEVL 749

Query: 817  IAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE 876
            + + P LHPGD+R   AVD+PEL HL + +VF  +G R   +   G DLDGD Y + WD+
Sbjct: 750  VCRAPALHPGDVRRAWAVDNPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYTLIWDQ 809

Query: 877  NLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSE 936
              +  S K + PM+Y A +  ++ + V Q+ + E F ++++N+ LG + N H+  +D   
Sbjct: 810  RFV-QSLKVYDPMDYEAPDPISV-KHVTQKHLNENFVQYILNDVLGQVDNCHLALSDM-- 865

Query: 937  YGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQ-SYKSNKILGR 995
            Y   D  C+ L+E+ +TAVDF KTG+   +   L+PK +PDFM K+  +  Y+S  ILG+
Sbjct: 866  YTPFDPRCLHLSEIHSTAVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYESTGILGK 925

Query: 996  LYRQSKDAYDEDISVSSEVDINPVDIH---YDTDLEV---PESVDFIADAWNQKCSYDGQ 1049
            ++R           V ++   +P D+    Y TD  +   P     +      K SY+  
Sbjct: 926  IFR----------IVQADAHFSPSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYERD 975

Query: 1050 LNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSD 1109
            L   + +Y+V  E E+ +G      +    +   L E L+ +Y+ L    R+  +K+ +D
Sbjct: 976  LQYDMRRYRV-YEPEIPSGIAIRNKRRKRVRDQNLNEPLREAYNLLVNNVRETAQKIVND 1034

Query: 1110 CELLSEDEKNALFERKASA----------WYQVTYHPEWVKKSLDLQEQDSARSVVLLSF 1159
             E  +      +  R   A          W Q     ++ +K  D ++ +  R   L+SF
Sbjct: 1035 FEFKTTLTPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKPLISF 1094

Query: 1160 AW 1161
            AW
Sbjct: 1095 AW 1096


>gi|449304105|gb|EMD00113.1| hypothetical protein BAUCODRAFT_119665 [Baudoinia compniacensis UAMH
            10762]
          Length = 1187

 Score =  296 bits (757), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 239/759 (31%), Positives = 355/759 (46%), Gaps = 92/759 (12%)

Query: 400  LYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQT 459
            LY+  K    I  + ++VITP   Y   P  E +NRVLRKY    D F+RV F DE   +
Sbjct: 408  LYELAKAYMHINLIHKVVITPAGTYLEGPSAEPTNRVLRKYATQTDCFIRVVFQDEDGSS 467

Query: 460  MNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDC 519
            M+ +  +               SQ+     R + +L G   + G+ FSFL FS S LR+ 
Sbjct: 468  MHHDPRA---------------SQEAIYHIRYKGVLDGTINIAGQGFSFLGFSHSSLRNR 512

Query: 520  SAWFFSE--DGKTSVL----DIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEV 572
            S WF +   D +T  L     + K +G FT  +  AKCAAR+GQCF+ T A+V V   EV
Sbjct: 513  SCWFMAPLIDSRTRTLVLSPQVIKELGDFTHIRTPAKCAARIGQCFTDTTASVSVKDWEV 572

Query: 573  DPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPA 632
              +LP ++RNG  FSDG+G ++  L  +V Q   +     P   QIR+ G KG+V+   +
Sbjct: 573  G-KLPVVERNGRDFSDGVGTLSRQLFEDVWQVYGMRNALKPTVLQIRFQGAKGMVS-LDS 630

Query: 633  KGDGIRMSLRESMNKF-QSHHTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQ 690
            +  G ++ LR +M KF  S    LEIC +  R  P  LNRQ + +L  L  P E   S+Q
Sbjct: 631  RLQGRQLLLRTNMEKFVGSQSRVLEICGAGFRPLPMVLNRQSVQILEDLGTPTEAVLSLQ 690

Query: 691  DSMLSKLNQML---VDSDVAFEVLTAACAEQGNTAAIML-SAGFNPQTEPHLRGMLTCIR 746
               + KL  ML   V++    E +    A +      ML  A  + + +  L G+     
Sbjct: 691  TREVQKLQCMLESAVNTASLLETMELTKAAKLPDLIDMLDQARLDFRHDRFLTGIAQMAV 750

Query: 747  AAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETK 806
              QL  ++ + RI +  G  L G +DE G L+ G+ ++ V+E            +  +  
Sbjct: 751  VHQLRDIKYRGRIHINDGVTLYGIMDETGYLQEGEVYV-VTE------------KAPDGG 797

Query: 807  KLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGS 863
            + ++I+  ++I ++P +HPGDI+ + AV  P    L HL + +VF Q G R   ++ SG 
Sbjct: 798  RKELIRNNILITRSPAMHPGDIQQVNAVSVPADSPLKHLSNVVVFSQHGARDLPSQLSGG 857

Query: 864  DLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGT 923
            DLDGDLY + WD  L P   K   P +Y   +   L R V  +D+ +FF   M    LG 
Sbjct: 858  DLDGDLYNIIWDSTLWP--TKFATPADYPRVKPVELDRIVTGKDMSDFFVTFMETNQLGM 915

Query: 924  ICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK-PKLYPDFMG-- 980
            IC+ H+  AD    G  D +CI LA +A+TAVD+ KTG  V M    K  +  PDFM   
Sbjct: 916  ICSIHMQLADQRPMGTWDPDCIKLAAMASTAVDYSKTGIPVDMKQCPKYDRCRPDFMAPS 975

Query: 981  -----------------KEAYQSYKSNKILGRLYRQSKD--------AYDEDISVSSEVD 1015
                                Y+ YKS K LG+LYR   +        A    ++ + E  
Sbjct: 976  PRILLSEQGYLDLEDELSRPYRYYKSQKALGQLYRAIDERSFIADLQAQQRAVTATHERS 1035

Query: 1016 INPVD--IHYDTDLEVPESVDFIAD---AWNQKCSYDGQLNGLLEQY-----KVNREEEL 1065
             +P++  +HY         + +      A + + SY+  L   +  Y      V  E+E+
Sbjct: 1036 SSPLNSLLHYMKKWANQYGIGYSHQTKLARDIRASYEESLLDAMYHYSPVAHSVLSEQEV 1095

Query: 1066 VTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFE 1104
              G I        R+ G   + L+     +R+ F  V E
Sbjct: 1096 YAGIIL------GRQSGAQNKSLRELAKEMRERFGSVVE 1128


>gi|392886219|ref|NP_001250556.1| Protein RRF-1, isoform b [Caenorhabditis elegans]
 gi|345107385|emb|CCD31066.1| Protein RRF-1, isoform b [Caenorhabditis elegans]
          Length = 1520

 Score =  295 bits (756), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 270/980 (27%), Positives = 438/980 (44%), Gaps = 193/980 (19%)

Query: 322  IHYEEGISFEIMFLVNAVMHKGIINQHQLS------DSFFDLLRGQSREVNV---AALKH 372
            I   E   F I +L+  ++ +G I + QL        +F +++    R  N    AAL+ 
Sbjct: 278  IDVNEERKFSITYLIECLLSRGAIVKDQLLLNEQHWKNFLEIIIWYYRNDNQLCEAALED 337

Query: 373  IYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVE---------VRRLVITPTKA 423
            +      + D  KR+  + + L K  +  +  K ++ + E         VR+++ TPT+ 
Sbjct: 338  LVH----LIDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESIEGYQRVRKVIFTPTRV 393

Query: 424  YCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQ 483
              + PE  + NRVLRK+     R LRVTF D+  + M +NV    +     D T N +  
Sbjct: 394  IYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLL-----DRTANKY-- 446

Query: 484  KTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE----------------- 526
                       L  G  +  R++ FL  S+SQ+RD  A+F                    
Sbjct: 447  -----------LEHGVRIANREYGFLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCNPTAS 495

Query: 527  --DGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK--- 580
              + K  + +++  +GRF++ +N+ K  AR+GQCF+ +  T      +      D+    
Sbjct: 496  NINFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLTGVGLGRDDYCSTYDLTGGR 555

Query: 581  -RNG--YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP------ 631
              NG  Y FSDG+G ++   A EV+Q ++     P C +QIR+ G KGV+A  P      
Sbjct: 556  ATNGSEYTFSDGVGMMSYQFAQEVSQAMQFGKAVPSC-FQIRFRGNKGVIAIEPFLDEIR 614

Query: 632  --AKGDGI------RMSLRESMNKFQSHHTTLEICSWTRFQPGFL---NRQIITLLSTLN 680
              A  +G+      +   R S  KFQ+   + +     +F    L   N+  I +L    
Sbjct: 615  KWALVNGVTSMKMAKCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVALNKPFINILD--Q 672

Query: 681  VPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSA------------ 728
            V +         + S++ +++    ++F       A+Q N      +             
Sbjct: 673  VSEMQSLDCHKRITSRIEELMDRQILSF-------AKQMNEETFCRNKLKEFPRRIDIDN 725

Query: 729  -----GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQ 781
                 GF   +EP  R ++       +     K +I +P+  GR ++G +DE G L+ GQ
Sbjct: 726  LRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSMLGVVDETGRLQYGQ 785

Query: 782  CFIQVSEPFLGNCFSK------HGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVD 835
             F+Q ++ +      +      HGS        +++ G V++ KNPC+ PGD+RI EAVD
Sbjct: 786  IFVQYTKNYKKKLPPRDSNNKVHGS--------EIVTGTVLLTKNPCIVPGDVRIFEAVD 837

Query: 836  HPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAE 895
             PELHH+ D +VFPQ G RPH +E +GSDLDGD Y V WD+ L+   +++  P ++   +
Sbjct: 838  IPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELL--LERNEEPFDFAVEK 895

Query: 896  AKTLTRPVDQR--DII--EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELA 951
             K    P D+   D++  EF+  ++  +++G I N+H+ ++D  +YG     C+ LA+  
Sbjct: 896  IKV---PYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSD--QYGLNSRVCMDLAKKN 950

Query: 952  ATAVDFPKTGK---------------IVTMPAHLKPKLYPDF-MGKEAYQSYKSNKILGR 995
              AVDF K+G+                  +P    P+  PDF MG E    Y S ++ G+
Sbjct: 951  CQAVDFTKSGQPPDPLETKWRADPVTFEVIPPE-NPERIPDFHMGNERSPMYVSPRLCGK 1009

Query: 996  LYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLE 1055
            L+R+ + A D  I +S E D    +I  D  + V     ++  A  Q  SY+GQL  ++E
Sbjct: 1010 LFREFQ-AIDNVIKISEERD-EQYNIELDETIFVTGFERYMESAQKQLSSYNGQLRSIME 1067

Query: 1056 QYKVNREEELVTGHIWSMPK------------YNSRKQGELKERLKHSYSALRKEFRQVF 1103
             Y +  E E+++G I  M              YN+ +  E K  +       R+ F + F
Sbjct: 1068 NYGIRSEGEIMSGCIVEMRNRISDKDQDDMSFYNTNQMIETK--MTSLVCKFRETFFEEF 1125

Query: 1104 EKMDSDCELL--SEDEKNAL----------FERKASAWYQVTYHPEWVKKSLDLQEQDSA 1151
                  C LL  + D  N L            +KA AWY+  Y           +   S 
Sbjct: 1126 GGFTVKCTLLPNAYDNGNCLNYRCEDPDQEVRKKAVAWYRACY-----------ECAQST 1174

Query: 1152 RSVVLLSFAWIANDYLARIK 1171
            R V  LSFAWIA D +A++K
Sbjct: 1175 REVRKLSFAWIAYDVIAKVK 1194


>gi|302907308|ref|XP_003049617.1| hypothetical protein NECHADRAFT_123067 [Nectria haematococca mpVI
            77-13-4]
 gi|256730553|gb|EEU43904.1| hypothetical protein NECHADRAFT_123067 [Nectria haematococca mpVI
            77-13-4]
          Length = 1261

 Score =  295 bits (755), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 245/755 (32%), Positives = 355/755 (47%), Gaps = 100/755 (13%)

Query: 403  GPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNA 462
            G K  D  V V + ++TPT+     P+ E  NRVLR + D  D FLRV F DE  Q    
Sbjct: 418  GSKLPDHQVWVFKALVTPTRVLLHGPDAESKNRVLRMFPDNNDSFLRVIFCDEDGQ---- 473

Query: 463  NVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAW 522
                        D+  N        F R R ++  G  + GRK++FL FS S LR  SAW
Sbjct: 474  ------------DLNFNPRIDNEDTFSRYRKVMDDGIDIAGRKYTFLGFSHSSLRSHSAW 521

Query: 523  FFSE--DGK---TSVLDIKKWMGRFTDKNI-AKCAARMGQCFSST-YATVEVPPTEVDPE 575
            F S   DG     ++  I + +G F D  + AKCAAR+GQ FS T YA      +     
Sbjct: 522  FASPFVDGNYQSQTISVILEALGDFQDIRVPAKCAARIGQAFSETPYAVPLFENSITTRH 581

Query: 576  LPDIKR--NGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAK 633
            +PDIK      VFSDG+G I+ D   +V   L +    P C  QIR+ GCKG+++    +
Sbjct: 582  IPDIKTADGSRVFSDGVGTISQDALEDVWMYLPMRSAAPTC-LQIRWGGCKGMLSL-DTR 639

Query: 634  GDGIRMSLR-ESMNKFQSHH-TTLEICSWTRFQPG--FLNRQIITLLSTLNVPDEMFWSM 689
             +G    +R ESM KF S+  T L IC  T  +P    LNRQ+I +L  +   ++ F+ +
Sbjct: 640  LEGKTFCIRKESMMKFPSNDLTELGICD-TSSKPLRLVLNRQMIKILEDMGTQNDWFFDL 698

Query: 690  QDSMLSKLNQMLV---DSDVAFEVLTAACAEQGNTAAIMLS-AGFNPQTEPHLRGMLTCI 745
            Q+  L+ L  +     ++    E  T             L   G + + +  LR  +  +
Sbjct: 699  QNKALNVLRGVTASAHNTSTFLEYQTIGVNMGLPKLVKQLDRMGIDYRRDKFLRSAVEHV 758

Query: 746  RAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET 805
               +L  L+ KARI V  G  L G +DE G L+  Q ++   + +      K+G R   T
Sbjct: 759  VLRELRLLKHKARIPVEKGVTLFGVMDETGFLKERQVYVTYDKTY----GVKNGRRINAT 814

Query: 806  KKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH---HLYDCLVFPQKGDRPHTNEASG 862
             +     G +++ ++P LHPGDI++ E V  P+ H   +L +C+VF QKGDR   ++ SG
Sbjct: 815  LE----DGIILVTRSPALHPGDIQVAEMVTPPKGHPLRNLQNCIVFSQKGDRDLPSQLSG 870

Query: 863  SDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLG 922
             DLDGDLY + WDE  +P  +K + P +Y       L RPV  +DI +FF   M  + LG
Sbjct: 871  GDLDGDLYNIIWDERAMP--EKVFEPADYPRVTPVPLDRPVTPKDIADFFINFMRTDILG 928

Query: 923  TICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG-----KIVTMPAHLKP----- 972
             I   HV+ AD  + G L   CI LAE+ +TAVDF KTG     K +  P   +P     
Sbjct: 929  MIATRHVMLADSHDLGTLHPECISLAEMHSTAVDFSKTGIPVEVKKLPKPPRFRPDFLAM 988

Query: 973  ----KLY----------------PDFMGKEAYQSYKSNKILGRLYRQSKD--AYDEDISV 1010
                KLY                 D M +   + YKS KILG LYR   +   + E+I  
Sbjct: 989  APPLKLYDLGQIDHIGDPEEYDEDDMMARAKPKYYKSTKILGHLYRSVDENKIWHENIHR 1048

Query: 1011 SSEVDINPVDIHYDTDLEVPES--------VDF---IADAWNQKCSYDGQLNGLLEQYKV 1059
              E     V   +D  L + E+        +D+     +AWN +  YD  ++  + ++  
Sbjct: 1049 KIETGGPSV---WDQLLTIVENEIVKYKLDIDWKRRTEEAWNIRNVYDSTISDNMWRFSE 1105

Query: 1060 N-----REEELVTGHIWSMPKYNSRKQGELKERLK 1089
            N      E E+  G I +     +R+Q +   +LK
Sbjct: 1106 NARSGLSEVEVFCGFILNKKGGQTRRQRDSSIKLK 1140


>gi|302510543|ref|XP_003017223.1| hypothetical protein ARB_04100 [Arthroderma benhamiae CBS 112371]
 gi|291180794|gb|EFE36578.1| hypothetical protein ARB_04100 [Arthroderma benhamiae CBS 112371]
          Length = 1233

 Score =  295 bits (754), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 239/778 (30%), Positives = 354/778 (45%), Gaps = 128/778 (16%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V V R  +TP   Y   P  E  NR+LRKY D  D F+RV F+DE               
Sbjct: 416  VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGD------------ 463

Query: 471  PIVRDITLNSFSQKTRVF-KRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS--ED 527
            P+  D + N      ++F +R   ++  G  + GR+F FL FS S LR  + WF +    
Sbjct: 464  PVFFDPSANL----EQIFHQRFAGVMKRGIEIAGREFEFLGFSHSSLRAQTCWFAAPFTT 519

Query: 528  GKTSVLDIKKWMGRFT----DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG 583
                 L+ +  +G        ++ +K AAR+GQ FS T  ++ V    V    PD+KRN 
Sbjct: 520  ANGDYLNARTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVKRND 579

Query: 584  YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRE 643
             +FSDG+G I+ DL   +  +  L     P  +QIR AG KG+V+    +  G  + LRE
Sbjct: 580  RIFSDGVGVISCDLMHRIWNEYALRERVKPTVFQIRIAGAKGMVSL-DTRRKGEFLMLRE 638

Query: 644  SMNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
            SM KF +     +EIC +  R  P +LN QII +L  L VP E F  +Q   ++ L    
Sbjct: 639  SMVKFPTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQRDEINFLYSTF 698

Query: 702  VDSDVAFEVLTAACAEQGNTAA----IMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKA 757
              ++ A + L  +   +         ++   G     +P L+ ++      +L  L+ +A
Sbjct: 699  SSTERAAKFLEDSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRA 758

Query: 758  RIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVI 817
            RI VP    L G +DE G L+  + +      +LG             ++  +++  VVI
Sbjct: 759  RIRVPNAVTLYGIMDETGYLKENEIYCV----YLGE----------NGRREILVRDNVVI 804

Query: 818  AKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTW 874
             ++P LHPGDI+++ AVD P    L  L++C+ F Q GDR   +  SG DLDGDLY + +
Sbjct: 805  TRSPALHPGDIQVVNAVDVPANSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIY 864

Query: 875  DENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADH 934
            D  L+P  +K+ PP +Y   EAK L R V+  DII+FF   M  + LG I   H   AD 
Sbjct: 865  DTRLVP--RKTIPPADYPRVEAKELDRKVETEDIIDFFVTFMQQDQLGRIATTHQTIADQ 922

Query: 935  SEYGALDENCILLAELAATAVDFPKTG---KIVTMPAHLKPKLYPDFMG----------- 980
            SE+G LD+ C+ LA L + AVD+ K+G    ++++P    P++ PDFM            
Sbjct: 923  SEFGTLDQACLKLAHLHSVAVDYSKSGIAVNVLSIPR--APRVRPDFMAPSPRFRVADSI 980

Query: 981  -------KEAYQS----------------YKSNKILGRLYR---------QSKDAYDEDI 1008
                   K   Q                 YKSN +LGRLYR         Q +DA   DI
Sbjct: 981  ESIIGEKKSTMQDDDDDDEDDSDHRKIRYYKSNNVLGRLYRSIDERSFLCQLRDAGAVDI 1040

Query: 1009 S------------VSSEVD----INPVDIHYDT-DLEVPESVDFIADAWNQ--------K 1043
            +            V SEVD     +   I +D  D+  P  + F  D +           
Sbjct: 1041 NTNTNVLRSIWNYVLSEVDGFLWTHLTGIFHDIKDMYEPPFISFSRDMFMDIYQADALGI 1100

Query: 1044 CSYDGQLNGLLEQYKVN------REEELVTGHIWSMPKYNSRKQGELKERLKHSYSAL 1095
             SY+ +L  L+ +Y          E EL  G I        R+  +  + ++  Y+ L
Sbjct: 1101 ISYEDELRELMRKYSATPLKNSISEYELFVGTILGHGHKQRRRDKDNAKEMRDEYNRL 1158


>gi|392886217|ref|NP_001250555.1| Protein RRF-1, isoform a [Caenorhabditis elegans]
 gi|8886070|gb|AAF80368.1|AF159144_1 RRF-1 [Caenorhabditis elegans]
 gi|14530419|emb|CAC42290.1| Protein RRF-1, isoform a [Caenorhabditis elegans]
          Length = 1601

 Score =  295 bits (754), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 270/980 (27%), Positives = 438/980 (44%), Gaps = 193/980 (19%)

Query: 322  IHYEEGISFEIMFLVNAVMHKGIINQHQLS------DSFFDLLRGQSREVNV---AALKH 372
            I   E   F I +L+  ++ +G I + QL        +F +++    R  N    AAL+ 
Sbjct: 359  IDVNEERKFSITYLIECLLSRGAIVKDQLLLNEQHWKNFLEIIIWYYRNDNQLCEAALED 418

Query: 373  IYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVE---------VRRLVITPTKA 423
            +      + D  KR+  + + L K  +  +  K ++ + E         VR+++ TPT+ 
Sbjct: 419  LVH----LIDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESIEGYQRVRKVIFTPTRV 474

Query: 424  YCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQ 483
              + PE  + NRVLRK+     R LRVTF D+  + M +NV    +     D T N +  
Sbjct: 475  IYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLL-----DRTANKY-- 527

Query: 484  KTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE----------------- 526
                       L  G  +  R++ FL  S+SQ+RD  A+F                    
Sbjct: 528  -----------LEHGVRIANREYGFLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCNPTAS 576

Query: 527  --DGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK--- 580
              + K  + +++  +GRF++ +N+ K  AR+GQCF+ +  T      +      D+    
Sbjct: 577  NINFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLTGVGLGRDDYCSTYDLTGGR 636

Query: 581  -RNG--YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP------ 631
              NG  Y FSDG+G ++   A EV+Q ++     P C +QIR+ G KGV+A  P      
Sbjct: 637  ATNGSEYTFSDGVGMMSYQFAQEVSQAMQFGKAVPSC-FQIRFRGNKGVIAIEPFLDEIR 695

Query: 632  --AKGDGI------RMSLRESMNKFQSHHTTLEICSWTRFQPGFL---NRQIITLLSTLN 680
              A  +G+      +   R S  KFQ+   + +     +F    L   N+  I +L    
Sbjct: 696  KWALVNGVTSMKMAKCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVALNKPFINILD--Q 753

Query: 681  VPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSA------------ 728
            V +         + S++ +++    ++F       A+Q N      +             
Sbjct: 754  VSEMQSLDCHKRITSRIEELMDRQILSF-------AKQMNEETFCRNKLKEFPRRIDIDN 806

Query: 729  -----GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQ 781
                 GF   +EP  R ++       +     K +I +P+  GR ++G +DE G L+ GQ
Sbjct: 807  LRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSMLGVVDETGRLQYGQ 866

Query: 782  CFIQVSEPFLGNCFSK------HGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVD 835
             F+Q ++ +      +      HGS        +++ G V++ KNPC+ PGD+RI EAVD
Sbjct: 867  IFVQYTKNYKKKLPPRDSNNKVHGS--------EIVTGTVLLTKNPCIVPGDVRIFEAVD 918

Query: 836  HPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAE 895
             PELHH+ D +VFPQ G RPH +E +GSDLDGD Y V WD+ L+   +++  P ++   +
Sbjct: 919  IPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELL--LERNEEPFDFAVEK 976

Query: 896  AKTLTRPVDQR--DII--EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELA 951
             K    P D+   D++  EF+  ++  +++G I N+H+ ++D  +YG     C+ LA+  
Sbjct: 977  IKV---PYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSD--QYGLNSRVCMDLAKKN 1031

Query: 952  ATAVDFPKTGK---------------IVTMPAHLKPKLYPDF-MGKEAYQSYKSNKILGR 995
              AVDF K+G+                  +P    P+  PDF MG E    Y S ++ G+
Sbjct: 1032 CQAVDFTKSGQPPDPLETKWRADPVTFEVIPPE-NPERIPDFHMGNERSPMYVSPRLCGK 1090

Query: 996  LYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLE 1055
            L+R+ + A D  I +S E D    +I  D  + V     ++  A  Q  SY+GQL  ++E
Sbjct: 1091 LFREFQ-AIDNVIKISEERD-EQYNIELDETIFVTGFERYMESAQKQLSSYNGQLRSIME 1148

Query: 1056 QYKVNREEELVTGHIWSMPK------------YNSRKQGELKERLKHSYSALRKEFRQVF 1103
             Y +  E E+++G I  M              YN+ +  E K  +       R+ F + F
Sbjct: 1149 NYGIRSEGEIMSGCIVEMRNRISDKDQDDMSFYNTNQMIETK--MTSLVCKFRETFFEEF 1206

Query: 1104 EKMDSDCELL--SEDEKNAL----------FERKASAWYQVTYHPEWVKKSLDLQEQDSA 1151
                  C LL  + D  N L            +KA AWY+  Y           +   S 
Sbjct: 1207 GGFTVKCTLLPNAYDNGNCLNYRCEDPDQEVRKKAVAWYRACY-----------ECAQST 1255

Query: 1152 RSVVLLSFAWIANDYLARIK 1171
            R V  LSFAWIA D +A++K
Sbjct: 1256 REVRKLSFAWIAYDVIAKVK 1275


>gi|296810484|ref|XP_002845580.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
 gi|238842968|gb|EEQ32630.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
          Length = 1152

 Score =  295 bits (754), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 247/830 (29%), Positives = 370/830 (44%), Gaps = 134/830 (16%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTM----NANVLS 466
            V V R ++TP   Y L P  E+ NR+LRKY    D FLRV F+DE    +    NAN+  
Sbjct: 363  VLVHRAMVTPCGIYLLGPYAEVKNRILRKYLGNTDYFLRVEFLDENGDPVFFDPNANLEK 422

Query: 467  YFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF--- 523
             F                    +R   ++  G  + GR F+FL FS S LR  + WF   
Sbjct: 423  IF-------------------HERFSGVMKRGIEVAGRNFNFLGFSHSSLRSQTCWFAAP 463

Query: 524  -FSEDGK-TSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK 580
              + DG+      I   +G F   ++ +K AAR+GQ FS T  ++ V    V   +PD++
Sbjct: 464  FTTPDGEYLDARTIINSIGHFDHIRSPSKQAARIGQAFSDTLTSISVSKEAVRLRVPDVE 523

Query: 581  RNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMS 640
            RNG +FSDG+G I+ +L  ++  +  L     P  +QIR AG KG+V+   ++  G  + 
Sbjct: 524  RNGRIFSDGVGVISRELMYKIWNEYALREKVKPTVFQIRIAGAKGMVSLDTSR-QGEFLM 582

Query: 641  LRESMNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN 698
            LRESM KF +  +  +EIC +  +  P +LN QII +L  L VP   F  +Q   +  L 
Sbjct: 583  LRESMVKFPTDDSYNIEICGAGIKALPFYLNSQIIKILEDLGVPFAAFHQLQQDEILSLY 642

Query: 699  QMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQT----EPHLRGMLTCIRAAQLWGLR 754
                 ++ A + L  +   +      +L            +P L  ++      +L  L+
Sbjct: 643  STFNSTEQAAKFLEDSPVPRSLRLPWLLLVLKGLGLRYTLDPFLHRIMELTTLLKLRDLK 702

Query: 755  EKARIFVPAGRWLMGCLDELGVLEGGQCF-IQVSEPFLGNCFSKHGSRFAETKKLQVIKG 813
             +ARI VP    L G +DE G L+  + + + +SE               + ++  +++ 
Sbjct: 703  YRARIRVPNAVTLYGIMDETGYLKENEIYCVFLSE---------------DGRREILVRD 747

Query: 814  FVVIAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
             VV+ ++P LHPGD++++ AVD P    L  L++C+ F Q G R   +  SG DLDGDLY
Sbjct: 748  NVVVTRSPALHPGDVQVVNAVDVPANSPLRRLHNCVAFSQHGVRDLPSMLSGGDLDGDLY 807

Query: 871  FVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVV 930
             + +D  LIP  ++++PP +Y   + + L R V+  DII+FF   M  + LG I   H  
Sbjct: 808  NIIYDTRLIP--QQTFPPADYPLVKTRELNRKVESNDIIDFFVTFMQQDQLGRIATTHQA 865

Query: 931  HADHSEYGALDENCILLAELAATAVDFPKTG---KIVTMPAHLKPKLYPDFMG------- 980
             AD S  G  DE C+ LA L + AVD+ K+G    ++ +P    P++ PDFM        
Sbjct: 866  IADQSSLGTRDETCLKLAHLHSVAVDYSKSGIPVNVLDIPR--APRIRPDFMAPSPRILI 923

Query: 981  ---------------------------KEAYQSYKSNKILGRLYRQSKDAYDEDISVSSE 1013
                                       +   + YKS+ ILGRLYR    + DE   +   
Sbjct: 924  EDSIEDSIEHIIRETEKTVQEDDDDNDRPRIRYYKSHNILGRLYR----SIDEQSFLRRL 979

Query: 1014 VDINPVDIHYDTDLEVPESV------DFIADAWNQ--------KCSYDGQLNGLLEQYKV 1059
             D+  V+   D+   V +S+      +     WN         K  Y+ QL  L+ QY  
Sbjct: 980  RDVGTVN--NDSRKSVLQSIWRYVEKEVDGFFWNHLTGICHDIKEIYEDQLRELMRQYSA 1037

Query: 1060 N------REEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELL 1113
                    E E+V G I        R+  E  + ++ SYS L  EF      M  D E  
Sbjct: 1038 TPWKSSITEYEVVVGTILGPGHKQRRRDKETSKEMRASYSRL-VEFTI---SMIRDTE-- 1091

Query: 1114 SEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIA 1163
                  AL    A  W  +       K       Q+      LLSF WIA
Sbjct: 1092 -SGGTEALERSIACFWVAINEQSFSQKPGFRNANQEK-----LLSFPWIA 1135


>gi|452977804|gb|EME77568.1| hypothetical protein MYCFIDRAFT_60792 [Pseudocercospora fijiensis
           CIRAD86]
          Length = 1015

 Score =  295 bits (754), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 243/814 (29%), Positives = 381/814 (46%), Gaps = 124/814 (15%)

Query: 265 GRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDF-EVPMSDPFFCIH 323
           G C  YR+ +S  HR +LS + + L   +     LS    ++   +F + P+ + F  ++
Sbjct: 44  GNCFVYRLHVSD-HR-QLSNINSILSRHKKSCSVLS----VKTRTEFPQEPIENTFTRLN 97

Query: 324 YEEGIS-------FEIMFLVNAVMHKGIINQHQ---LSDSFFDLLRGQSREVNVAALKHI 373
           YE   +       F++ + V+ +   G +   +   L     +LL     E  ++ L+  
Sbjct: 98  YELSDTNRFGAKPFKLRYQVDRLARNGFLPPQKVISLLPKISELLTSYGLEATLSGLRRF 157

Query: 374 ---YSYKWPVFDACK-RLKLVQEWLLKDPELYKG---------PKQIDDIVEVRRLVITP 420
                Y  P  ++ +  +  +++ L +   LY            K+   I  + ++++TP
Sbjct: 158 SRNTPYPGPTVESVEFTIATLEQRLHEFVALYDDHAPDNPFELAKRHVHINLIHKVIVTP 217

Query: 421 TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
                  PE E +NRVLRKY +  D F+RV F DE     +   + Y           + 
Sbjct: 218 AGIRLEGPEPEPTNRVLRKYAENIDDFVRVVFQDE-----HGGPVRY-----------DP 261

Query: 481 FSQKTRVF-KRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS----EDGKTSVLD- 534
            +   R++ +R R++L     +CGR FSFL FS S LR  S WF +     +G+    + 
Sbjct: 262 RTDLARIYHERFRNVLDTSIVICGRGFSFLGFSHSSLRSQSCWFMAPFVNRNGRLIFAEK 321

Query: 535 IKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKI 593
           + K +G F+  +  AKCAAR+GQ F+ T ATV + P +V  +L  I+RNG  FSDG+G I
Sbjct: 322 VLKGLGDFSSIRTPAKCAARIGQNFTDTNATVHLEPDQVF-DLQVIERNGRDFSDGVGTI 380

Query: 594 TPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHT 653
           +  L  EV ++        P   QIR+ G KG+V+  P +  G  + LR +M K+ +  +
Sbjct: 381 SEALLREVWRRYGTKKMLKPTVLQIRFQGAKGMVSLDP-RLPGKALMLRANMRKYDTETS 439

Query: 654 -TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL 711
             LEIC +  +  P  LN+Q I +   L +P  +F  +Q S +  L QM      A  V 
Sbjct: 440 WVLEICGAGFKPLPMVLNQQFIKIFEDLGIPMSVFLDLQRSAMKHLRQM-----TALSVN 494

Query: 712 TAACAEQGNTAAI---------MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVP 762
           +A   E    A           +   GF+   +  L  ++      QL  ++ +ARI V 
Sbjct: 495 SAKLLEDSGIARATGMPRLIRDLAQIGFDYHEDHFLYSIVEMAVVTQLRDIKYRARIPVE 554

Query: 763 AGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPC 822
           AG  L G +DE G L+ GQ F+ ++E            +  E  K  +IK  VVI ++P 
Sbjct: 555 AGVTLYGIMDETGYLKEGQIFV-ITE------------KAPEGGKHILIKDKVVITRSPA 601

Query: 823 LHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
           +HPGDI++++AVD P    L  L + +VF + GDR   ++ SG DLDGD+Y + W E ++
Sbjct: 602 MHPGDIQVVDAVDVPPNSLLRRLSNVVVFSKWGDRDLPSKLSGGDLDGDIYNIIWHEGMV 661

Query: 880 PPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGA 939
           P  + ++   +Y       L R V  +D+ +FF   M  + LG IC  H   AD  E G+
Sbjct: 662 P--RTTYTAADYPRVSPLVLDREVTIKDMSDFFVTFMETDLLGMICTTHKQLADQREAGS 719

Query: 940 LDENCILLAELAATAVDFPKTG---KIVTMPAHLKPKLYPDFMG---------------- 980
           LD +C+ LA LA+TAVD+ KTG   K   +P + K    PDFM                 
Sbjct: 720 LDPDCLTLAGLASTAVDYSKTGISVKHTQIPRNDKHIFRPDFMSPTPRVVVSSEGLADLE 779

Query: 981 ----------------KEAYQSYKSNKILGRLYR 998
                           + +Y+ Y S K LG LYR
Sbjct: 780 KEEEVDDDAFEGLDSERRSYRYYPSEKTLGHLYR 813


>gi|409039622|gb|EKM49158.1| hypothetical protein PHACADRAFT_201955 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 908

 Score =  294 bits (753), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 244/830 (29%), Positives = 377/830 (45%), Gaps = 108/830 (13%)

Query: 305  IREEPDFEVP--------MSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFD 356
            I  +PDF  P        M    F     + + F+  +L+ A++  G I   ++ +    
Sbjct: 55   INLDPDFSTPTEHVPVQAMPGAEFVDRCLQCLPFDKRYLIEALLSHGTITIPEVDELLRA 114

Query: 357  LLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDD----IVE 412
            L   Q  +  +  L+ ++  KW      ++  + ++  L+D         I D    +  
Sbjct: 115  LAHYQRDDDQIVILEGLF--KW-----TRQASIEKD--LQDVARRATRLHISDTGRHLTA 165

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            VRR ++TPT+    PP  E SN +LR ++   DRFLRV F+D+               P+
Sbjct: 166  VRRCLVTPTRCVLNPPTWETSNEMLRDHEHYVDRFLRVQFVDDDGDF-----------PV 214

Query: 473  VRDITL--NSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKT 530
            V +  +  +    +  VF RVR  LS G  + GR + F  FS SQ ++   W  +EDG  
Sbjct: 215  VGETLVIDDEMQGREGVFARVRRALSDGLVIAGRHYVFATFSESQAKERGCWMIAEDGPF 274

Query: 531  SVLDIKKWMGRFT-DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDG 589
            +V  +   MG  + ++ IAK AAR                  ++  L DIKRN YVF+DG
Sbjct: 275  TVSAVLAKMGDLSQERIIAKHAARQRGSMPKKIT--------INRALDDIKRNSYVFTDG 326

Query: 590  IGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDG-IRMSLRESMNKF 648
            +G  +  LA   A+ L   + P   A QIR  G KGV+A    +  G   + LR SM K 
Sbjct: 327  VGHFSHSLAQACAKTLGYRLIPVSAA-QIRIGGAKGVLAVVQDETLGENEVRLRPSMIKL 385

Query: 649  QS--HHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDV 706
            Q      TL I     +    LNRQ I L+    V  +  + +     ++  + +   + 
Sbjct: 386  QGVKPEPTLNIIKVATYSKATLNRQAILLMEDRGVSSDTLFDI----FTQEKRRIQGLES 441

Query: 707  AFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRW 766
             F+ +  A      T   +  A  +   +P ++ + + ++   L  L+ KA I +    +
Sbjct: 442  GFDPMRLASV----TTFPLARALRHDIKDPVVQNVTSLVKCRLLCDLKWKAWIELSESAY 497

Query: 767  LMGCLDELGVLEGGQCFIQV----SEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPC 822
            LMG  DE   L+ G+ F Q+    S+P                   QVI+    I +NPC
Sbjct: 498  LMGIADETDSLQEGEIFCQIHPSGSDP-------------------QVIEARCTIYRNPC 538

Query: 823  LHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPS 882
            LHPGD+R++ AVD P+L HL + +VF  +G R   N  +G DLDGD Y + WD  L+ P 
Sbjct: 539  LHPGDVRLVTAVDCPKLRHLRNVIVFSTRGCRDLPNMLAGGDLDGDCYSLIWDPRLLIPE 598

Query: 883  KKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDE 942
               + PM+Y    A     PV      + F   M N+ LG +CNAH+  AD   +G  D 
Sbjct: 599  GGEYEPMDYTPPPAVRSEYPVTIEQTKQHFLDTMKNDVLGRVCNAHMALADL--HGPSDF 656

Query: 943  NCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKE----------AYQSYKSNKI 992
             C  LA LA+ AVDF KTG  V      + + YPDFMGKE            +SY S K+
Sbjct: 657  QCRELASLASQAVDFSKTGVAVQQSEIPRLEEYPDFMGKEYKSIRIFKKQEIRSYSSEKV 716

Query: 993  LGRLYRQ--SKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDF---IADAWNQKCSYD 1047
            LGR++R+   +  ++E + ++ +  +          LE  E   F   + +A   K  Y+
Sbjct: 717  LGRMFREIDPEPIFEEAVELAGDPRL----------LEAGEETGFREYLQEAAMHKARYE 766

Query: 1048 GQLNGLLEQYKVNREEELVTGHIWSMPKYNSR--KQGELKERLKHSYSAL 1095
             +L GLL +Y +N E E V G +   PK   +  K  +L+  ++ +YS +
Sbjct: 767  FELTGLLRRYNIN-ETECVAGLLLRSPKTRLKVEKDYDLRVAVRDAYSHI 815


>gi|341885460|gb|EGT41395.1| CBN-RRF-3 protein [Caenorhabditis brenneri]
          Length = 1736

 Score =  294 bits (752), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 226/777 (29%), Positives = 380/777 (48%), Gaps = 89/777 (11%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V+V ++++TP++   + PEV + NR++R++    D  LR  F D+ L  +          
Sbjct: 647  VQVAKVIVTPSRILLMAPEVMMVNRIVRRFG--PDYALRCVFRDDNLGRL---------- 694

Query: 471  PIVRDITLNSFSQKTRVF-KRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS---- 525
              +RD ++N+    + +  + + + L  G  +  RK+SFL +S+SQ+RD   + ++    
Sbjct: 695  -AIRDFSVNNIDHLSNIVTESIFNTLKYGVQVADRKYSFLGWSNSQMRDQGCYLYAPRVD 753

Query: 526  -EDGKTS--VLDIKKWMGRFTDK-NIAKCAARMGQCFSSTYATVEVPPTE--VDPELPDI 579
               G+ S  V +I+KWMG F +  ++ K  +RMGQCF+    TV +      V+P++   
Sbjct: 754  PATGRVSGTVEEIRKWMGDFREAVSVPKMMSRMGQCFTQAQPTVRLERRHWIVEPDVEGG 813

Query: 580  KRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRM 639
                Y FSDG G+I+  LA  + + L+L     P  +Q+R+ G KG++   P   D I M
Sbjct: 814  LSGKYCFSDGCGRISVKLANHITRILEL--KETPACFQVRFKGFKGILVIDPTIDDIIGM 871

Query: 640  S---LRESMNKF-----QSHHTTLEICSWTRFQPGFLNRQIITLLSTLN----------V 681
                 R+S  KF           LE+  +    P  LNR  IT+L  ++          +
Sbjct: 872  PKVIFRKSQQKFGEGGGDQQDEYLEVVKYAMPSPVCLNRPFITILDQVSAKQSASSHRRI 931

Query: 682  PDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGM 741
             + + + ++  + S L+ ML++ + A E L        +       AGF    +P +R M
Sbjct: 932  TNRIHYYLERELCS-LSNMLLNENQAAEELVNRTNLPIDWNKASKHAGFQLSKDPLIRSM 990

Query: 742  LTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHG 799
            L  I    +     KA+IF+P   GR + G +DE G+L+ GQ FIQ S+           
Sbjct: 991  LFSIYRYNIIHHISKAKIFLPPDLGRSMYGVVDETGLLQYGQVFIQYSQ----------- 1039

Query: 800  SRFAETKKLQVIK-GFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTN 858
                +T    ++K G V+I KNPC  PGD+R+ EAV  P L HL D +VFP+ G RPH +
Sbjct: 1040 -SIRQTSATPILKTGKVLITKNPCHVPGDVRVFEAVWQPALAHLVDVVVFPRHGPRPHPD 1098

Query: 859  EASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVN 918
            E +GSDLDGD Y + WD+ ++    +    M Y ++ A    +     D++EFF +++  
Sbjct: 1099 EMAGSDLDGDEYSIIWDQEMLLDYNEE--AMIYPSSTAPEEDKEPTTDDMVEFFLRYLQQ 1156

Query: 919  ENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKP-KLYPD 977
            +++G + NAH+ +AD   +G   ENC  +A   A AVDFPK+G      A  +  ++ PD
Sbjct: 1157 DSIGRMSNAHLTYADL--HGLFHENCRNIALKCAVAVDFPKSGVPAEPLASFEQCEMTPD 1214

Query: 978  FMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDF-- 1035
            +M       Y S ++ G+L+R+++    E++    E   +  +  YD  +  P+  D   
Sbjct: 1215 YMATGGKPMYYSPRLNGQLHRKARKV--EEVLEEYETRGSIFEGEYDKII-CPDDADVFF 1271

Query: 1036 -----IADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPK-----------YNSR 1079
                 +  A   +  Y  ++  LL++Y +  E  +V+GH  S+ +           Y++ 
Sbjct: 1272 GSEAKLVQAMMIRDEYIDRMQQLLDEYGIEDEASVVSGHAASIKRLAGMERDDYSFYHTD 1331

Query: 1080 KQGELK-ERLKHSYSA-LRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTY 1134
            K  EL+ E+L H + A   +EF      + +D   +  +   A+ E K   WY V+Y
Sbjct: 1332 KIVELRYEKLYHVFRAKFFEEFGGEAAHLVNDGSKMRLNCTKAMRE-KVRQWYFVSY 1387


>gi|225554768|gb|EEH03063.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus G186AR]
          Length = 1240

 Score =  294 bits (752), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 258/868 (29%), Positives = 384/868 (44%), Gaps = 136/868 (15%)

Query: 217  AILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTP---------SGAIGRC 267
            +I +   ++PR+ Y+T   D+L     DML     W+R                   G C
Sbjct: 205  SITITADTAPRL-YKTDPTDVLAAGLHDMLQIQQKWMRGRPLKTRVGHFGGEHEALAGTC 263

Query: 268  NSYRISISSRHRGKLSK---VITYLGERRVQVDSLSRPITIREEPDFEVPMS---DPFFC 321
              YR  +      K+S    V+  L   R  +  ++R +  R +  ++VP S     F  
Sbjct: 264  FVYRFLL------KISDDLVVVRDLANER-HIPDIARWVDHRAK--YDVPYSTLMQRFTA 314

Query: 322  IHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG----QSREVNVAALKHIYS-Y 376
               +E + + + F +  ++  G I+  + + SF   +R     +  ++ V AL  + S  
Sbjct: 315  FLSQENMPYRVRFQLQKLVWNGDISPAK-AISFASRVRATLVIEDLDIVVRALMRLSSDV 373

Query: 377  KWPVFDA----------CKRLKLVQEWLLKDPELYKGPKQID-DIVEVRRLVITPTKAYC 425
            KWP  D            +  K   E   ++ E+ +  + +  + V + R  ITP   Y 
Sbjct: 374  KWPSPDVEASEVDVPALVEVFKNALESTAREREMTRSNRPMHPNHVSIHRAQITPCGTYL 433

Query: 426  LPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKT 485
              P  E  NRVLR Y    D FLRV F+DE    +  +  +        D+   S     
Sbjct: 434  DGPHAETKNRVLRHYSSHVDHFLRVEFVDETGDPVRYDPRASI------DMIFES----- 482

Query: 486  RVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVL----DIKKWMGR 541
                R +++L  G  + GRKF FL FS S LR  + WF +   K  +L     I + +GR
Sbjct: 483  ----RFKTVLKSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNATTIIQNLGR 538

Query: 542  FTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAME 600
            F   ++ AK AAR+GQ FS T  ++ +    +     D++RNG VFSDG+G I+P +   
Sbjct: 539  FDHIQSPAKQAARIGQTFSDTLTSIPISEKYISVG-KDVERNGRVFSDGVGTISPSVMYM 597

Query: 601  VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHT----TLE 656
            + +   L     P  +QIR AG KG+++   ++  G  + LR SM KF   H+     +E
Sbjct: 598  IWKDHSLRTVVKPTVFQIRLAGAKGMISL-DSRKKGKSLVLRPSMIKFHLPHSYNAFNIE 656

Query: 657  IC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN----------QMLVDSD 705
            IC S  +  P FLN Q+I +L  L V D +F  +Q   +S+L           + L D++
Sbjct: 657  ICGSGLKPLPFFLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATSTAKAARFLEDTN 716

Query: 706  VAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGR 765
            +A  V             I+   G     +  LR ++      +L  L+ +ARI VP   
Sbjct: 717  IAKSVGLPWLIN------ILEGFGLRHSNDEFLRRVMELAVLIKLRDLKYRARIRVPNAV 770

Query: 766  WLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHP 825
             L G +DE G+L+ G+ F            S  G R        ++   VV+ ++P +HP
Sbjct: 771  TLFGIMDETGILKEGEVFC--------TSLSDKGVREV------LVNPRVVVTRSPAMHP 816

Query: 826  GDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPS 882
            GD++I  AVD P    L  L++C+ F Q G R   +  SG DLDGDLY V +D  L+P  
Sbjct: 817  GDVQIARAVDVPADSPLRQLHNCIAFSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLLP-- 874

Query: 883  KKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDE 942
            K+   P EY   + K L R V + DII+FF   M  + LG I   H   AD    G  D 
Sbjct: 875  KRIARPAEYPRVQEKVLGRAVVREDIIDFFVTFMQQDQLGRIATIHQALADRRPLGTFDP 934

Query: 943  NCILLAELAATAVDFPKTGKIVTMPAHLK-PKLYPDFMG--------------------- 980
             C+LLAEL +TAVDF KTG  V +    K P   PDF                       
Sbjct: 935  ECLLLAELHSTAVDFSKTGVPVDLARIPKFPSCRPDFQAPSPRIRIAENLSLLEGDMDAV 994

Query: 981  ----------KEAYQSYKSNKILGRLYR 998
                      + A + YKS  ILG+LYR
Sbjct: 995  QDGGDEDDDERPAVRFYKSENILGKLYR 1022


>gi|341891711|gb|EGT47646.1| CBN-EGO-1 protein [Caenorhabditis brenneri]
          Length = 1632

 Score =  293 bits (751), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 248/877 (28%), Positives = 393/877 (44%), Gaps = 163/877 (18%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            VR+++ TPT+   + PE  + NRVLR+Y     R LR+TF D+  Q M  N  S  +   
Sbjct: 491  VRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTSTLLE-- 548

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTS- 531
                            K V + L  G  + GR F +L  S+SQ+RD  A+F  +   +  
Sbjct: 549  ----------------KTVNNYLHSGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQC 592

Query: 532  ------------------VLDIKKWMGRF-TDKNIAKCAARMGQCFSS-----------T 561
                              +   +K +GRF T  NI K  AR+GQCF+            T
Sbjct: 593  REYEAIHHVKPPITYNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLDRCT 652

Query: 562  YATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYA 621
            Y T+            +IKR+ Y FSDG+G ++   A  V+Q +      P C +Q R+ 
Sbjct: 653  YMTMYDLTGG-----KNIKRDEYTFSDGVGMMSLRFAQMVSQVMDFGKGVPSC-FQFRFR 706

Query: 622  GCKGVVACWP---------------AKGD----GIRMSLRESMNKFQSHH---TTLEICS 659
            G KGV+A  P                  D    G+    R S  KF S       +EI  
Sbjct: 707  GMKGVIAVEPLLDMIRKWSLEFALEKPSDDVAWGLNCVFRPSQIKFISKRHPRDQVEIVK 766

Query: 660  WTRFQPGFLNRQIITLLSTLNVPDEM---------FWSMQDSMLSKLNQMLVDSDVAFEV 710
            ++   P  LN+  I +L  ++    +            + D  +    Q +VD       
Sbjct: 767  YSSPVPVSLNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLLFAQQMVDETFCRNR 826

Query: 711  LTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLM 768
            L      + +   +  + GF   +EP  R ++       +     K +I +P   GR ++
Sbjct: 827  L-KELPRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIPIPQDLGRSML 885

Query: 769  GCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDI 828
            G +DE G L+ GQ F+Q ++        K+ +R       QV+ G V++ KNPC+  GD+
Sbjct: 886  GVVDETGRLQYGQIFVQYTKNLALKLPPKNAAR-------QVLTGTVLLTKNPCIVAGDV 938

Query: 829  RILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPP 888
            RI EAVD PELHH+ D +VFPQ G RPH +E +GSDLDGD Y + WD+ L+    K+  P
Sbjct: 939  RIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLL--LDKNEDP 996

Query: 889  MEYNAAEAKTLTRPVDQRDII-EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILL 947
             ++ + + K+  +  +  D++ EF+ K++  +++GTI N+H+ ++D  +YG     C+ L
Sbjct: 997  FDFTSEKQKSSFKEEEIDDLMREFYVKYLKLDSVGTISNSHLHNSD--QYGLNARVCMDL 1054

Query: 948  AELAATAVDFPKTGKIVTMPAHLKPK-----------------LYPDF-MGKEAYQSYKS 989
            A+    AVDF K+G+    P  L+ K                   PD+ MG +    Y S
Sbjct: 1055 AKKNCQAVDFTKSGQ---PPDELERKWRKDEETGEMIPPERCERVPDYHMGNDHTPMYVS 1111

Query: 990  NKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQ 1049
             ++ G+L+R+ K A D+ + +S E D   V+I  D ++ +     ++  A ++   Y+ Q
Sbjct: 1112 PRLCGKLFREFK-AIDDVLKISEERD-EQVEISIDENIMMDGYESYMHSARDELSRYNAQ 1169

Query: 1050 LNGLLEQYKVNREEELVTGHIWSMPK------------YNSRKQGELKERLKHSYSALRK 1097
            L  ++E Y +  E E+ +G I  M              YN+ +  E K  + + +   R+
Sbjct: 1170 LRSMMENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQMIETK--VTNLFKKYRE 1227

Query: 1098 EFRQVFE-----------KMDSDCELLSEDEK--NALFERKASAWYQVTYHPEWVKKSLD 1144
             F + FE           ++ SD  +L    +       RKA AWY+  Y          
Sbjct: 1228 HFFEEFEGGWEANTESSSRIGSDANILQRQCRAPTQKMMRKAVAWYRACY---------- 1277

Query: 1145 LQEQDSARSVVLLSFAWIANDYLARIKIRCREMANID 1181
             +E    R    LSFAWIA D +A +K + R +A+ D
Sbjct: 1278 -EEARITRENKKLSFAWIAFDVIAMVK-QTRSLASDD 1312


>gi|70608336|gb|AAZ04410.1| putative RNA-dependent RNA polymerase SDE1/SGS2/RDR6 [Nicotiana
           benthamiana]
          Length = 172

 Score =  293 bits (751), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 138/172 (80%), Positives = 152/172 (88%), Gaps = 1/172 (0%)

Query: 705 DVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAG 764
           DVAF+V+TA+CAE GNTAAIMLSAGF PQ+EPHLRGML+ IRA+QL  LR KARIFVP+G
Sbjct: 1   DVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSG 60

Query: 765 RWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCL 823
           RWLMGCLDELG LE GQCFIQVS P L +CF KHG  F++ KK LQVIKG V+IAKNPCL
Sbjct: 61  RWLMGCLDELGELEQGQCFIQVSSPSLESCFVKHGPNFSDIKKNLQVIKGLVIIAKNPCL 120

Query: 824 HPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 875
           HPGD+RILEAVD P LHHLYDCLVFPQKGDRPH ++ASGSDLDGDLYFVTWD
Sbjct: 121 HPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHPDQASGSDLDGDLYFVTWD 172


>gi|408389379|gb|EKJ68835.1| hypothetical protein FPSE_11001 [Fusarium pseudograminearum CS3096]
          Length = 1277

 Score =  293 bits (751), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 240/780 (30%), Positives = 366/780 (46%), Gaps = 110/780 (14%)

Query: 397  DPE---LYKG---PKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRV 450
            DPE   +Y G   P QI     V + ++TPT+     PE E  NRVLRKY D  D FLRV
Sbjct: 422  DPERDRIYGGKLPPNQI----WVFKALVTPTRLLLDGPEAESKNRVLRKYADYNDYFLRV 477

Query: 451  TFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLA 510
             F +E  Q                D+  +       ++ + R ++  G  + GRKF FL 
Sbjct: 478  LFCEEDGQ----------------DLRFHPKVDNEPIYSQFRRMMDHGIQIAGRKFDFLG 521

Query: 511  FSSSQLRDCSAWFFS-----EDGKTSVLDIKKWMGRFTDKNI-AKCAARMGQCFSSTYAT 564
            FS S LR  SAWF +     +    S   I + +G F D  + AKCAAR+GQ FS T   
Sbjct: 522  FSHSSLRSHSAWFSAPFVDKDHQLQSPEAILQALGDFRDIRVPAKCAARIGQAFSETPYA 581

Query: 565  VEVPPTEVDPE-LPDIKR--NGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYA 621
            V +    + P  +PD+K      VFSDG+G I+ +    +   L ++   P C  QIR+ 
Sbjct: 582  VPISENNIVPRYIPDVKSEDGSRVFSDGVGTISQEALESIWPYLSMNSAAPTC-LQIRWG 640

Query: 622  GCKGVVACWPAKGDGIRMSLR-ESMNKFQSHHT-TLEICSWTRFQPG--FLNRQIITLLS 677
            GCKG+++    + +G    +R ESM KF+S  T  L IC  T  +P    LNRQ+I +L 
Sbjct: 641  GCKGMLSL-DTRLEGKVFCIRQESMMKFKSEDTGELGICD-TASKPLRLVLNRQMIKILE 698

Query: 678  TLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT--AACAEQGNTAAI--MLSAGFNPQ 733
             +   DE F+ +Q++ L  L  +  D+      L   A     G    +  +     + +
Sbjct: 699  DMGTRDEWFFELQNNALDILRNVTADATNTSSFLEHHAIGINMGLPRLVKQLEKMDIDYR 758

Query: 734  TEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGN 793
             +  L+  +  +   +L  L+ KARI V  G  L G +DE G L+ G+ ++   + +   
Sbjct: 759  RDKFLKAAVEHVVLRELRLLKHKARIPVDNGVTLFGIMDETGFLKEGEVYVTYDKTY--- 815

Query: 794  CFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL---YDCLVFPQ 850
                 G       K  +  G +++ ++P LHPGDI++++ V  P+ H L    +C++F Q
Sbjct: 816  -----GRNNGRGIKSTLTDGEIIVTRSPALHPGDIQLVKQVTPPQGHSLRSLQNCIIFSQ 870

Query: 851  KGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIE 910
            KG R   +  SG DLDGD+Y + WD   +P   + + P +Y     + L R V+ +DI +
Sbjct: 871  KGKRDLPSMLSGGDLDGDIYNIIWDPEAMP--SRVFRPADYPRVTPQPLDRQVEPKDIAD 928

Query: 911  FFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHL 970
            FF   M  + LG I   HV+ AD+++ G++D +CI LAEL +TAVDF KTG  V + A  
Sbjct: 929  FFINFMRTDILGVIATRHVILADYNDLGSIDRDCIALAELHSTAVDFSKTGIPVNVKALP 988

Query: 971  K-PKLYPDF-----------------------------MGKEAYQSYKSNKILGRLYRQ- 999
            + P+  PDF                             M +     Y+S KILG+LYR  
Sbjct: 989  RAPRFRPDFLATAPPLKLYDKGQLAHIGEDDEMDNADDMARTKTNYYQSEKILGQLYRNV 1048

Query: 1000 -SKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADA-WNQKCSYDGQLNGLLEQY 1057
              K  +DEDI  S       V     T +E  E++ +  D  W ++     ++ GL E  
Sbjct: 1049 DEKKIWDEDIHRSINTAGPSVWDQLLTIVE-NEAIKYKLDIDWTRQSQEAWKIRGLYEST 1107

Query: 1058 KVNR-------------EEELVTGHIWSMPKYNSRKQGE----LKERLKHSYSALRKEFR 1100
              ++             E E+  G I +     +R+QG+    LKE +  + + + K+ R
Sbjct: 1108 IADKMWHFSENPRAPLTEVEVFCGFILNKRGAQTRRQGDASIKLKEEIDRTMTWIVKQIR 1167


>gi|239613137|gb|EEQ90124.1| RNA-dependent RNA polymerase [Ajellomyces dermatitidis ER-3]
          Length = 1154

 Score =  293 bits (750), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 213/644 (33%), Positives = 305/644 (47%), Gaps = 95/644 (14%)

Query: 411 VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
           V + R+ +TP   Y   P +E  NRVLR+Y +  D FLRV FMDE    +  +  +    
Sbjct: 334 VSIHRVQVTPCGIYLDGPYMESKNRVLRRYANHVDHFLRVEFMDESGDPVRYDPRASI-- 391

Query: 471 PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FSED 527
               D+            +R + +L  G  + GRKF FL FS S LR  + WF   F  D
Sbjct: 392 ----DLIFQ---------QRFKGVLKNGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYAD 438

Query: 528 GKT-SVLDIKKWMGRFTDKNI-AKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYV 585
           G   +   I + +GRF   N  AK AAR+GQ FS T  ++ +   E+   + D++RN  V
Sbjct: 439 GILYNATTIIQNLGRFDHINSPAKQAARIGQTFSETLTSIPI-SEEIISVVQDVRRNDRV 497

Query: 586 FSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESM 645
           FSDG+G I+P +   + +   L     P  +QIR AG KG+V+   ++  G  + LR SM
Sbjct: 498 FSDGVGTISPSVMYMIWKDYSLRTMVKPTVFQIRIAGAKGMVSL-DSRNKGESLVLRPSM 556

Query: 646 NKFQSHHT----TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN-- 698
            KF    +     +EIC S  R  P FLN Q+I +L  L V   +F  +Q   + +L   
Sbjct: 557 IKFPVTTSFNAYNIEICGSGIRSLPFFLNAQLIKILEDLGVDGNVFLKLQRDEILRLRAT 616

Query: 699 --------QMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQL 750
                   + L D+++A  V            +I+ + G     +  LR ++  +   +L
Sbjct: 617 ATSTTQAAKFLEDTNIAKSVGLPWL------ISILEALGLRHSDDEFLRRVMELVVLIKL 670

Query: 751 WGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
             L+ +ARI VP    L G +DE G L+ G+ F            S  G R        +
Sbjct: 671 RDLKYRARIRVPKAVTLFGIMDETGYLKEGEIFC--------TSLSDKGRREV------L 716

Query: 811 IKGFVVIAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDG 867
           +   VV+ ++P +HPGD++I +AVD P    L  L++C+ F Q GDR   +  SG DLDG
Sbjct: 717 LNPKVVVTRSPAMHPGDVQIAKAVDVPADSPLRQLHNCIAFSQHGDRDLPSMLSGGDLDG 776

Query: 868 DLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNA 927
           DLY V +++ LIP  +   PP +Y   + K L RPV + DII+FF   M  + LG I   
Sbjct: 777 DLYNVIFEDTLIP--RVISPPAQYPRVQEKVLDRPVVRDDIIDFFVTFMQQDQLGRIATV 834

Query: 928 HVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK-PKLYPDFMG------ 980
           H   AD    G  D  C+LLAEL +TAVDF K+G  V +    K P+  PDF        
Sbjct: 835 HQTIADQKALGTFDPQCLLLAELHSTAVDFSKSGVPVDLARIPKFPRYRPDFQAPGPRVR 894

Query: 981 --------------------------KEAYQSYKSNKILGRLYR 998
                                     +   + YKS KILG+LYR
Sbjct: 895 IAESLSLLEEHDQMTVLDDDDEEEDERPTARYYKSEKILGKLYR 938


>gi|156045453|ref|XP_001589282.1| hypothetical protein SS1G_09915 [Sclerotinia sclerotiorum 1980]
 gi|154694310|gb|EDN94048.1| hypothetical protein SS1G_09915 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1184

 Score =  293 bits (749), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 251/828 (30%), Positives = 384/828 (46%), Gaps = 106/828 (12%)

Query: 324  YEEGISFEIMFLVNAVMHKGIINQHQLSD---SFFDLLRGQSREVNVAALKHIY------ 374
            +   + F + F +  +   G ++  Q+ D   +F  + +  S  + VAA + ++      
Sbjct: 315  FNNTLPFPLTFQIQKLAQNGFLSPRQVIDLLPTFTSMFKRSSLPICVAATRRLFHQLPFP 374

Query: 375  --SYKWPVFD--ACKRLKLVQEWLLKDPELYK---GPKQIDDIVEVRRLVITPTKAYCLP 427
              + K   FD  A   L L  E L     LY    G     +   V R+ ITP   Y   
Sbjct: 375  GPNVKAEDFDKNAIVELLLKNEKLSTQEALYAEDFGGTASQNTALVHRVTITPAGFYLEG 434

Query: 428  PEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRV 487
            PE E +NR+LRKY      F+RV F DE    +       + + +  D   +       V
Sbjct: 435  PEAESNNRILRKYAGSHGNFVRVNFCDEDGGRIQ------YASNVANDEIFDG------V 482

Query: 488  FKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF----FSEDGKTSVLDIKKWMGRFT 543
            FK   +IL  GF +  +K+ +L  S S LR  S WF    F+++G      I   +G FT
Sbjct: 483  FK---NILKNGFSIASQKYEYLGSSHSSLRTQSCWFVAPFFNKEGYHDAQHIIHDLGNFT 539

Query: 544  D-KNIAKCAARMGQCFSSTYATVEVPPTEVDPE-LPDIKRNGYVFSDGIGKITPDLAMEV 601
              ++ AKCAAR+GQ FS T   + +    V  E +PD++RNG VFSDG+G ++  L  ++
Sbjct: 540  AIRSPAKCAARIGQAFSDTPNAITLDKRTVTIERIPDVERNGRVFSDGVGTMSESLMHKI 599

Query: 602  AQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQ-SHHTTLEICSW 660
             +KL       P  +QIRY G KG+++    +  G  + LRESM KF  S    LEIC  
Sbjct: 600  WEKLPNKKFVKPTCFQIRYQGAKGMIS-LDTRLPGDHLRLRESMIKFDGSISNDLEICGG 658

Query: 661  TRFQP--GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ 718
              ++P   +LNRQ I +L  L V  E F  +Q+  +++L  +  ++  A   L     E+
Sbjct: 659  A-YKPLSMYLNRQFIKILEDLGVEPEYFMKLQEKEVTRLRAITANTYNASTFL-----ER 712

Query: 719  GNTAAIML---------SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMG 769
                 ++L             + + +  LR +L      +L  L+ KARI V  G  L G
Sbjct: 713  KRVGDVVLLPYLIEHCSYLNLDFRNDVFLRDVLEMAVLIELRTLKHKARIPVEKGYHLHG 772

Query: 770  CLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIR 829
             +DE G+L+ G+ +          C+ + G      K+  +++  VVI + P LHPGD++
Sbjct: 773  IMDETGILKEGEIYC---------CWLEDG------KRTTLVQSSVVITRAPALHPGDVQ 817

Query: 830  ILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW 886
            +  AVD P    L  LY+C+ F QKG R   ++ SG DLDGDLY+V +D  +    KK+ 
Sbjct: 818  LANAVDVPSNSPLKRLYNCICFSQKGARDLPSQLSGGDLDGDLYYVMFDPEM--KLKKTV 875

Query: 887  PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCIL 946
             P +Y       + R V Q+D+ + F   M  + LG I N H V+AD +  G   + C++
Sbjct: 876  IPADYPRLPPLDIGRSVTQQDMADNFLTFMKTDQLGVISNRHQVYADQNVMGTQCQQCLI 935

Query: 947  LAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDE 1006
            LAEL +TAVDF KTG  +   A ++     D +    Y  Y+S K  G LYR    A DE
Sbjct: 936  LAELCSTAVDFSKTG--IAEYAPIEAMDEEDEVSNIKY--YESQKTCGMLYR----AIDE 987

Query: 1007 DISVSSEVDINPVDIHYDTDLEVPESV-DFIA-------------DAWNQKCSYDGQLNG 1052
                    DI  +D+  +   +V + V +F+              DA   K  Y+  +  
Sbjct: 988  RQVFE---DIQRLDMQANDTPDVMQHVWEFVKSRSQGILWQHLRNDAMEIKDIYENNMLD 1044

Query: 1053 LLEQYKVN-----REEELVTGHIWSMPKYNSRKQGELKERLKHSYSAL 1095
            ++  Y  +      E E+  G+I       S+KQ EL   +K  Y  +
Sbjct: 1045 IMHHYSEHPSRPVSEREVFVGNILGKAGSVSKKQRELCTSMKEKYDEI 1092


>gi|398389633|ref|XP_003848277.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
 gi|339468152|gb|EGP83253.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
          Length = 1234

 Score =  293 bits (749), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 232/763 (30%), Positives = 356/763 (46%), Gaps = 117/763 (15%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            V ++V+ PT      PE E +NRVLR+Y    D FLRV F DE   T             
Sbjct: 423  VHKVVVMPTGLRLEGPEPEPTNRVLRRYAKYTDFFLRVEFRDEDGAT------------- 469

Query: 473  VRDITLNSFSQKTRVFK-RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FSEDG 528
               +  +  +   RV+  R +++L     + GR FSFL FS S LR  S WF   F  +G
Sbjct: 470  ---VRYDPRTDLHRVYHGRFKTVLDSSILISGRAFSFLGFSHSSLRSQSCWFMAPFVFNG 526

Query: 529  KTSVLD-IKKWMGRF-TDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVF 586
                 D + + +G F   +  AKCAAR+GQ F+ T  +VE+ P +V   L D++RNG  F
Sbjct: 527  SLRYADHVLQDLGEFKMIRTPAKCAARIGQNFTDTNTSVELRPEQVY-WLNDVERNGRTF 585

Query: 587  SDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMN 646
            SDG+G I+ +L   V +         P   QIR+ GCKG+V+    +  G  ++LR+SM 
Sbjct: 586  SDGVGIISMELLQSVWRVYGTRRLLKPTILQIRFQGCKGMVSL-DTRLRGKCLALRKSMR 644

Query: 647  KFQSHHT-TLEICSWT-RFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDS 704
            KFQ+  T  LEIC    R  P  LNRQ   +   L +P  +F  +Q   + KL +M   +
Sbjct: 645  KFQTETTWDLEICGAAFRPLPMILNRQFTKIFEDLGIPLSVFMDLQQKSVDKLRRMTHSA 704

Query: 705  -DVAFEVLTAACAEQGNTAAIML---SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIF 760
             + A  +    C +     +++      G + + +P L  ++     ++L  ++ + RI 
Sbjct: 705  INTANFLDETECTKAARVPSLIRYLGQMGLDYRHDPFLYNVVEMSVVSKLRDIKYRGRIP 764

Query: 761  VPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKN 820
            +  G  L G +DE GVL+  + F+   +  LG              +  +++  V++ ++
Sbjct: 765  IDDGVTLYGIMDETGVLKANEIFVVTEKAPLGG-------------RSVLVRNNVIVTRS 811

Query: 821  PCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEN 877
            P +HPGD++I+ AVD P+   L  L + +VF Q GDR   +  SG DLDGD+Y V W   
Sbjct: 812  PAMHPGDVQIVNAVDVPQGSPLRQLSNVVVFSQHGDRDLPSMLSGGDLDGDIYNVIWLPQ 871

Query: 878  LIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEY 937
            L+P  + ++   +Y     + L R V+++D+ +FF K M ++ LG IC AH+  AD  E 
Sbjct: 872  LVP--EVTYDAADYPKVPTEELDRDVNRKDMSDFFVKFMESDQLGMICTAHLQIADQRER 929

Query: 938  GALDENCILLAELAATAVDFPKTG---KIVTMPAHLKPKLYPDFMG-------------- 980
            G LD +CI L+ +A+TAVDF KTG    +  MP + + K  PDFM               
Sbjct: 930  GVLDPDCIKLSAMASTAVDFSKTGIPVNLAQMPRYDRCK--PDFMAPSPRVIVSEQGYIA 987

Query: 981  ------------------KEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIH 1022
                              + +Y+ Y+S+K LG L+R    A DE   +  ++ ++     
Sbjct: 988  FEDEDEDEDVAFEGIDTERRSYRFYRSDKALGHLFR----AIDERQFI-DKMQVDRAAYP 1042

Query: 1023 YDTDLEVPESVDFIADAW----------------NQKCSYDGQLNGLLEQYKVN-----R 1061
             D   E+ E+V   A  W                N +  YD  L  LL  Y+ +      
Sbjct: 1043 RDNGQELMETVLEYAQRWADQYGVLYGHHRTLARNIRACYDDALANLLVDYEPSPHSPLS 1102

Query: 1062 EEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFE 1104
            E E+  G I        R  G     L+     +R+ F  V E
Sbjct: 1103 EIEVFAGQIL------GRVAGPQGNTLRDLAKTMRERFATVVE 1139


>gi|261191013|ref|XP_002621915.1| RNA dependent RNA polymerase [Ajellomyces dermatitidis SLH14081]
 gi|239590959|gb|EEQ73540.1| RNA dependent RNA polymerase [Ajellomyces dermatitidis SLH14081]
          Length = 1239

 Score =  293 bits (749), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 214/644 (33%), Positives = 304/644 (47%), Gaps = 95/644 (14%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V + R+ +TP   Y   P +E  NRVLR+Y +  D FLRV FMDE    +  +  +    
Sbjct: 419  VSIHRVQVTPCGIYLDGPYMESKNRVLRRYANHVDHFLRVEFMDESGDPVRYDPRASI-- 476

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FSED 527
                D+            +R + +L  G  + GRKF FL FS S LR  + WF   F  D
Sbjct: 477  ----DLIFQ---------QRFKGVLKNGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYAD 523

Query: 528  GKT-SVLDIKKWMGRFTDKNI-AKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYV 585
            G   +   I + +GRF   N  AK AAR+GQ FS T  ++ +   E+   + D+KRN  V
Sbjct: 524  GILYNATTIIQNLGRFDHINSPAKQAARIGQTFSETLTSIPI-SEEIISVVQDVKRNDRV 582

Query: 586  FSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESM 645
            FSDG+G I+P +   + +   L     P  +QIR AG KG+V+   ++  G  + LR SM
Sbjct: 583  FSDGVGTISPSVMYMIWKDYSLRTMVKPTVFQIRIAGAKGMVSL-DSRNKGESLVLRPSM 641

Query: 646  NKFQSHHT----TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN-- 698
             KF    +     +EIC S  R  P FLN Q+I +L  L V   +F  +Q   + +L   
Sbjct: 642  IKFPVTTSFNAYNIEICGSGIRSLPFFLNAQLIKILEDLGVDGNVFLKLQRDEILRLRAT 701

Query: 699  --------QMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQL 750
                    + L D+++A  V            +I+ + G     +  LR ++  +   +L
Sbjct: 702  ATSTTQAAKFLEDTNIAKSVGLPWL------ISILEALGLRHSDDEFLRRVMELVVLIKL 755

Query: 751  WGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
              L+ +ARI VP    L G +DE G L+ G+ F            S  G R        +
Sbjct: 756  RDLKYRARIRVPKAVTLFGIMDETGYLKEGEIFC--------TSLSDKGRREV------L 801

Query: 811  IKGFVVIAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDG 867
            +   VV+ ++P +HPGD++I +AVD P    L  L++C+ F Q GDR   +  SG DLDG
Sbjct: 802  LNPKVVVTRSPAMHPGDVQIAKAVDVPADSPLRQLHNCIAFSQHGDRDLPSMLSGGDLDG 861

Query: 868  DLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNA 927
            DLY V + + LIP  +   PP +Y   + K L RPV + DII+FF   M  + LG I   
Sbjct: 862  DLYNVIFKDTLIP--RVISPPAQYPRVQEKVLDRPVVRDDIIDFFVTFMQQDQLGRIATV 919

Query: 928  HVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK-PKLYPDFMG------ 980
            H   AD    G  D  C+LLAEL +TAVDF K+G  V +    K P+  PDF        
Sbjct: 920  HQTIADQKALGTFDPQCLLLAELHSTAVDFSKSGVPVDLARIPKFPRYRPDFQAPGPRVR 979

Query: 981  --------------------------KEAYQSYKSNKILGRLYR 998
                                      +   + YKS KILG+LYR
Sbjct: 980  IAESLSLLEEHDQMTVLDDEEEEEDERPTARYYKSEKILGKLYR 1023


>gi|451855231|gb|EMD68523.1| hypothetical protein COCSADRAFT_178332 [Cochliobolus sativus ND90Pr]
          Length = 1244

 Score =  292 bits (748), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 220/689 (31%), Positives = 338/689 (49%), Gaps = 108/689 (15%)

Query: 380  VFDACKRLKLVQE-------WLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVEL 432
            +F   K ++LVQE       W L   +L    K+   +    +  +TPT      P+ ++
Sbjct: 408  MFKVRKFVELVQENVEDCKHWGLAYRDLNGKQKKHHHLALTYKATVTPTGILLRGPDWDV 467

Query: 433  SNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVR 492
            SNRVLR+Y    + F+RV F DE       + LS F          +S + + +V++R R
Sbjct: 468  SNRVLRRYTTRTEYFMRVFFADE-------DGLSVF---------HDSRASQNQVYERFR 511

Query: 493  SILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FSEDGK-TSVLDIKKWMGRFTDKNI- 547
            ++L  G  + GR F FL FS + LR+  AWF   F  DG      ++ + +G F+  +  
Sbjct: 512  NVLQNGISVAGRTFQFLGFSHASLRNHQAWFMAPFEMDGSLVRARNVIQDLGDFSHIHCS 571

Query: 548  AKCAARMGQCFSSTYATVEVPPTEVDPELPD-IKRNGYVFSDGIGKITPDLAMEVAQKLK 606
            AKCAAR+GQ FS T  +V VP T    E+ D ++RNG  FSDG G I+ +L   V + L 
Sbjct: 572  AKCAARIGQAFSDTIFSVPVPETAYVTEVKDDVERNGRTFSDGCGTISLELLRTVWRAL- 630

Query: 607  LDVNPP------PCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHT--TLEIC 658
                PP      P   QIRY G KGV++   A   G ++ +R+SM K+ +  T   LE+C
Sbjct: 631  ----PPERRQQRPTVLQIRYRGAKGVLSL-DASLSGQQLHVRKSMTKYIAKETWRDLELC 685

Query: 659  SWTRFQP--GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVD---SDVAFEVLTA 713
                ++P   FLN Q I +L  L VP E F  +QD  + K+ +++ +   +  +F   + 
Sbjct: 686  G-AAYKPLSVFLNHQFIKILEDLGVPAEKFLDVQDEAV-KILKLITEHPLNAASFLAYSH 743

Query: 714  AC--AEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCL 771
            +C  A+      +M   G +   +  L  ++     + L  L+ +ARI +  G  L G +
Sbjct: 744  SCVFAKVPQLFEMMHRIGLSFHADRFLTDIVEVAAMSSLRSLKYRARIPIEKGYLLYGVM 803

Query: 772  DELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRIL 831
            DE   L+ G+ +I   +            +  + K+  ++   +V+ + P LHPGD++++
Sbjct: 804  DETNTLKYGEVYIATED----------HDKTGKLKRSILVGNQIVVTRAPALHPGDVQLV 853

Query: 832  EAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPP 888
             AVD P+   L  L++C+VF Q+G R   ++ SG DLDGDL+ + +D+ LIP    +  P
Sbjct: 854  NAVDVPDDSPLRALHNCVVFSQQGPRDLPSQLSGGDLDGDLFHIIYDQRLIPAY--TVEP 911

Query: 889  MEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLA 948
             EY+   A  L RPV+  DI++FF ++M  + LG I N H + AD    G    +C++LA
Sbjct: 912  AEYDKVPANDLGRPVEANDIVDFFIEYMKMDRLGQISNKHKIRADVKPNGTRHPDCLILA 971

Query: 949  ELAATAVDFPKTGKIVTMPAHLKPK----LYPDFMG------------------------ 980
            +LA+ AVDF KTG    M   L PK      PDFM                         
Sbjct: 972  KLASDAVDFSKTGVPADMS--LIPKGIDHFRPDFMAPGSNLVINELGAAELAGIEEDDID 1029

Query: 981  -----------KEAYQSYKSNKILGRLYR 998
                       K   + Y+S+KILG LYR
Sbjct: 1030 DPDSISVLDADKGRIRYYRSDKILGILYR 1058


>gi|268563038|ref|XP_002638736.1| C. briggsae CBR-EGO-1 protein [Caenorhabditis briggsae]
          Length = 1631

 Score =  292 bits (747), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 245/865 (28%), Positives = 386/865 (44%), Gaps = 158/865 (18%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            VR+++ TPT+   + PE  + NRVLR+Y     R LR+TF D+  Q M  N  S  +   
Sbjct: 491  VRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTSTLLE-- 548

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
                            K V + L  G  + GR F +L  S+SQ+RD  A+F  +   +  
Sbjct: 549  ----------------KTVNTYLMNGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQC 592

Query: 533  LDIKKW-------------------MGRF-TDKNIAKCAARMGQCFSS-----------T 561
             + +K                    +GRF T  NI K  AR+GQCF+            T
Sbjct: 593  REYEKMCRMAPPITFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLDRCT 652

Query: 562  YATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYA 621
            Y T+            +IK + Y FSDG+G ++ + A  V+Q +      P C +Q R+ 
Sbjct: 653  YVTMYDLTGG-----KNIKGDEYTFSDGVGMMSMNFAQMVSQVMDFGKGVPSC-FQFRFR 706

Query: 622  GCKGVVAC---------WPAKGD----------GIRMSLRESMNKFQSHH---TTLEICS 659
            G KGV+A          W  + D          G+    R S  KF S       +EI  
Sbjct: 707  GMKGVIAVEPFLDDLRQWSIENDIQEVSEDTAWGLNCVFRPSQIKFISKRHPRDQVEIVK 766

Query: 660  WTRFQPGFLNRQIITLLSTLN----------VPDEMFWSMQDSMLSKLNQMLVDSDVAFE 709
            ++   P  LN+  I +L  ++          V + +   +   MLS   QM +D      
Sbjct: 767  YSSPVPVSLNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLSFAQQM-IDETFCRN 825

Query: 710  VLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWL 767
             L      + +   +  + GF   +EP  R ++       +     K +I +PA  GR +
Sbjct: 826  RL-KELPRRIDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIPIPADLGRSM 884

Query: 768  MGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGD 827
            +G +DE G L+ GQ F+Q +         K  SR        V+ G V++ KNPC+  GD
Sbjct: 885  LGVVDETGRLQYGQIFVQYTRNLALKLPPKSASR-------SVLTGTVLLTKNPCIVAGD 937

Query: 828  IRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWP 887
            +RI EAVD PELHH+ D +VFPQ G RPH +E +GSDLDGD Y + WD+ L+    ++  
Sbjct: 938  VRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLL--LDRNED 995

Query: 888  PMEYNAAEAKTLTRPVDQRDII-EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCIL 946
            P ++ + + K+  +  +  D++ EF+ K++  +++GTI N+H+ ++D  +YG     C+ 
Sbjct: 996  PFDFTSEKQKSSFKEEEIDDLMREFYVKYLKLDSVGTISNSHLHNSD--QYGLNARVCMD 1053

Query: 947  LAELAATAVDFPKTGK--------------IVTMPAHLKPKLYPDF-MGKEAYQSYKSNK 991
            LA+    AVDF K+G+                 M    + +  PD+ MG +    Y S +
Sbjct: 1054 LAKKNCQAVDFTKSGQPPEELERKWRKDEVTGEMIPPERAERVPDYHMGNDHTPMYVSPR 1113

Query: 992  ILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLN 1051
            + G+L+R+ K A D+ + +S E D   V+I  D  + V    +++  A      Y+ QL 
Sbjct: 1114 LCGKLFREFK-AIDDVLKISEERD-EQVEITIDETIMVDGYKEYMHSAREDLARYNAQLR 1171

Query: 1052 GLLEQYKVNREEELVTGHIWSMPK------------YNSRKQGELKERLKHSYSALRKEF 1099
             ++E Y +  E E+ +G I  M              YN+ +  E K  + + Y   R+ F
Sbjct: 1172 SMMENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQMIETK--VTNLYKKYREHF 1229

Query: 1100 RQVFE---KMDSDCELLSEDEKNAL----------FERKASAWYQVTYHPEWVKKSLDLQ 1146
             + FE   + +++     E + N L            +KA AWY+  Y           +
Sbjct: 1230 FEEFEGAWEANTEGTSRGESDTNILQRHCRAPTQNMMKKAVAWYRACY-----------E 1278

Query: 1147 EQDSARSVVLLSFAWIANDYLARIK 1171
            E    R    LSFAW+  D LA +K
Sbjct: 1279 EARVTRENKKLSFAWLMYDVLAMVK 1303


>gi|46109400|ref|XP_381758.1| hypothetical protein FG01582.1 [Gibberella zeae PH-1]
          Length = 1467

 Score =  291 bits (746), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 243/780 (31%), Positives = 371/780 (47%), Gaps = 110/780 (14%)

Query: 397  DPE---LYKG---PKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRV 450
            DPE   +Y G   P QI     V + ++TPT+     PE E  NRVLRKY D  D FLRV
Sbjct: 422  DPERDRIYGGKLPPNQI----WVFKALVTPTRLLLDGPEAESKNRVLRKYADYNDYFLRV 477

Query: 451  TFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLA 510
             F +EG Q                D+  +       ++ + R ++  G  + GRKF FL 
Sbjct: 478  LFCEEGGQ----------------DLRFHPKVDNEPIYSQFRRMMDHGIQIAGRKFDFLG 521

Query: 511  FSSSQLRDCSAWF----FSEDGK-TSVLDIKKWMGRFTDKNI-AKCAARMGQCFSSTYAT 564
            FS S LR  SAWF      +D +  S   I + +G F D  + AKCAAR+GQ FS T   
Sbjct: 522  FSHSSLRSHSAWFSAPFIDKDRQLQSPEAILQALGDFRDIRVPAKCAARIGQAFSETPYA 581

Query: 565  VEVPPTEVDPE-LPDIKR--NGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYA 621
            V +    + P  +PD+K      VFSDG+G I+ +    +   L ++   P C  QIR+ 
Sbjct: 582  VPIFENNIVPRYIPDVKSEDGSRVFSDGVGTISQEALEAIWPYLSMNSAAPTC-LQIRWG 640

Query: 622  GCKGVVACWPAKGDGIRMSLR-ESMNKFQSHHT-TLEICSWTRFQPG--FLNRQIITLLS 677
            GCKG+++    + +G    +R ESM KF+S  T  L IC  T  +P    LNRQ+I +L 
Sbjct: 641  GCKGMLSL-DTRLEGKVFCIRQESMMKFKSEDTGELGICD-TASKPLRLVLNRQMIKILE 698

Query: 678  TLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL--TAACAEQGNTAAI--MLSAGFNPQ 733
             +   DE F+ +Q++ L  L  +  D+      L   A     G    +  +     + +
Sbjct: 699  DMGTRDEWFFELQNNALDILRNVTADATNTSSFLEHQAIGINMGLPRLVKQLEKMDIDYR 758

Query: 734  TEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGN 793
             +  L+  +  +   +L  L+ KARI V  G  L G +DE G L+ G+ ++   + +   
Sbjct: 759  RDKFLKAAVEHVVLRELRLLKHKARIPVDNGVTLFGIMDETGFLKEGEVYVTYDKTY--- 815

Query: 794  CFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL---YDCLVFPQ 850
                 G   +   K  +  G +++ ++P LHPGDI++++ V  P+ H L    +C+VF Q
Sbjct: 816  -----GRNNSRGIKSTLTDGEIIVTRSPALHPGDIQLVKQVTPPQGHSLRSLQNCIVFSQ 870

Query: 851  KGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIE 910
            KG R   +  SG DLDGD+Y + WD   +P   + + P +Y     + L R V+ +DI +
Sbjct: 871  KGKRDLPSMLSGGDLDGDIYNIIWDPEAMP--SRVFRPADYPRVTPQPLDRQVEPKDIAD 928

Query: 911  FFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHL 970
            FF   M  + LG I   HV+ AD+++ G++D +CI LAEL +TAVDF KTG  V + A  
Sbjct: 929  FFINFMRTDILGVIATRHVILADYNDLGSIDRDCIALAELHSTAVDFSKTGIPVNVKALP 988

Query: 971  K-PKLYPDFM-----------GKEAY------------------QSYKSNKILGRLYRQ- 999
            + P+  PDF+           G+ A+                    Y+S KILG+LYR  
Sbjct: 989  RAPRFRPDFLATAPPLKLYDKGQLAHIGEDDEMDDADDMARTKTNYYQSEKILGQLYRNV 1048

Query: 1000 -SKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADA-WNQKCSYDGQLNGLLEQY 1057
              K  +DEDI          V     T +E  E++ +  D  W ++     ++ GL E  
Sbjct: 1049 DEKKIWDEDIHRRINTAGPSVWDQLLTIVE-NEAIKYKLDIDWKRQSQEAWKIRGLYESS 1107

Query: 1058 KVNR-------------EEELVTGHIWSMPKYNSRKQGE----LKERLKHSYSALRKEFR 1100
              ++             E E+  G I +     +R+QG+    LKE +  + + + K+ R
Sbjct: 1108 IEDKRWHFSENPRVPLTEVEVFCGFILNKRGAQTRRQGDASIKLKEEIDRTMTWIVKQIR 1167


>gi|396482889|ref|XP_003841572.1| similar to rna-dependent rna polymerase [Leptosphaeria maculans JN3]
 gi|312218147|emb|CBX98093.1| similar to rna-dependent rna polymerase [Leptosphaeria maculans JN3]
          Length = 1248

 Score =  291 bits (746), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 231/752 (30%), Positives = 358/752 (47%), Gaps = 121/752 (16%)

Query: 329  SFEIMFLVNAVMHKGIINQHQLSD---SFFDLLRGQSREVNVAALKHI---YSYKWPVFD 382
            +F + F + A++ +G I   +L        +L R    E+  +AL+ +        P  D
Sbjct: 343  NFAVRFQLTALLLEGYIKPVKLIGLIPHVLNLARIHGAELTASALRQLARSIPMPSPSRD 402

Query: 383  ACK------------RLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEV 430
            A +             ++  +E  L   +L +  ++ + +    +  ITPT      P+ 
Sbjct: 403  ASQFTIEAFVALLNESIQDSKERELTGYDLSRKQRKHNHLALTYKATITPTGMLLRGPDW 462

Query: 431  ELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKR 490
            ++SNRVLRKY    + F+RV F DE       + LS F  P          + + RV++R
Sbjct: 463  DVSNRVLRKYGKHTECFMRVFFADE-------DGLSVFFDP---------RASQDRVYER 506

Query: 491  VRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FSEDG-KTSVLDIKKWMGRFTD-K 545
             R +L  G  + GR+F FL FS + LR   AWF   F +DG      DI + +G F+  +
Sbjct: 507  FRGVLRNGITVAGRRFDFLGFSHASLRSHQAWFMTPFIKDGISICARDIIEDLGDFSHIR 566

Query: 546  NIAKCAARMGQCFSSTYATVEVPPTE-VDPELPDIKRNGYVFSDGIGKITPDLAMEVAQK 604
              A+CAAR+GQ FS T  +V VP +  V     D+KRNG  FSDG G I+ +L  +V   
Sbjct: 567  CSARCAARIGQAFSDTIFSVRVPDSAYVTESKVDVKRNGRYFSDGCGTISLELMRKVWNA 626

Query: 605  LKLDVNPP------PCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHH--TTLE 656
            L     PP      P   QIRY G KGV++       G ++ +R+SM K+ +      LE
Sbjct: 627  L-----PPERREQRPTVLQIRYRGAKGVLSL-DTSLVGEQLHVRQSMTKYIAKEGWKDLE 680

Query: 657  ICSWTRFQP--GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL--- 711
            +C    ++P   FLN Q I +L  L VP+  F ++Q+  +  L  +      A   L   
Sbjct: 681  LCG-AAYKPLTVFLNHQFIKILEDLGVPERNFKAIQNEAVDTLKLITEHPINAASFLEYS 739

Query: 712  -TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGC 770
             ++  A       +M   G +   +  L  ++     + L  L+ +ARI +  G  L G 
Sbjct: 740  HSSVYARTPRLFELMHQIGLSFHADRFLTDIVEVAAMSNLRSLKYRARIPISQGYLLYGI 799

Query: 771  LDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRI 830
            +DE G+L+ G+ ++             H +   +++K+ +I   V+I + P LHPGD++I
Sbjct: 800  MDETGILKEGEVYVATKS---------HDAIGHKSRKI-LIGDRVIITRAPALHPGDVQI 849

Query: 831  LEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWP 887
            ++AVD PE   L  L++C+VF Q+G R   ++ SG DLDGDL+ + +D  LIP    + P
Sbjct: 850  VKAVDVPEYSPLRALHNCVVFSQQGARDLPSQLSGGDLDGDLFHIIYDSRLIP--DFTVP 907

Query: 888  PMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILL 947
            P +Y +   K L RPV   D+++FF ++M  + LG I N H + AD    G  D +CILL
Sbjct: 908  PADYKSEPPKDLGRPVQVNDMVDFFVEYMNMDRLGQISNKHKIRADIKPNGTRDPDCILL 967

Query: 948  AELAATAVDFPKTGKIVTMPAHLK--PK----LYPDFMG--------------------- 980
            A+LA+ AVDF K+G     PA +   P+    + PDFM                      
Sbjct: 968  AQLASDAVDFSKSGN----PADINKVPRGSDWIRPDFMAPGSNLVINELGSAELEELEQD 1023

Query: 981  --------------KEAYQSYKSNKILGRLYR 998
                          K   + Y+S+K+LG LYR
Sbjct: 1024 DVDAPDRISVLDADKARMRYYRSDKVLGVLYR 1055


>gi|347830482|emb|CCD46179.1| similar to rna-dependent rna polymerase [Botryotinia fuckeliana]
          Length = 1203

 Score =  291 bits (746), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 250/822 (30%), Positives = 383/822 (46%), Gaps = 131/822 (15%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            + R+ ITP   Y   PE E +NR+LRKY      F+RVTF DE     + + L Y     
Sbjct: 421  IHRVTITPAGFYLDGPEPESNNRILRKYAGNHSNFVRVTFCDE-----DGDRLQY----- 470

Query: 473  VRDITLNSFSQKTRVFKRV-RSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS----ED 527
                   S +    ++  V R +L  GF +  +K+ +L  S S LR  S WF +     D
Sbjct: 471  ------ASNASNDEIYDGVFRKVLQDGFSIGKQKYEYLGSSHSSLRTQSCWFVAPFTQND 524

Query: 528  GKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVF 586
                 L I + +GRF D ++ AKCAAR+GQ FS T  T+ +  T     + DI+RNG VF
Sbjct: 525  IYYDALHITQDLGRFGDIRSPAKCAARIGQAFSDTPNTLTLDETVTVETVADIERNGRVF 584

Query: 587  SDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMN 646
            SDG+G ++  L  ++  +L       P  +QIRY G KG+++   ++  G+++ LRESM 
Sbjct: 585  SDGVGTMSEKLMEKIWDRLPDKYLVKPTCFQIRYRGAKGMIS-LDSRLPGVKLRLRESMI 643

Query: 647  KFQ-SHHTTLEICSWT-RFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDS 704
            KF+ S    LEIC    +  P +LNRQ I +L  L V  E F  +Q   +S+L ++    
Sbjct: 644  KFEGSTSNDLEICGGAYKPLPMYLNRQFIKILEDLGVEPEYFMRLQAKEVSRLREITAS- 702

Query: 705  DVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPH-------------LRGMLTCIRAAQLW 751
              A+   T   +++     ++      PQ   H             LR +L      +L 
Sbjct: 703  --AYNASTFLQSKRVGDVVLL------PQLIEHCSALDLDFRNDLFLRDILEMTVLIELR 754

Query: 752  GLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVI 811
             L+ KARI V  G  L G +DE G+LE G+ +          C+ + G      K+  ++
Sbjct: 755  TLKHKARIPVERGYHLHGIMDETGILEEGEIYC---------CWIEDG------KRTTLV 799

Query: 812  KGFVVIAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGD 868
               VVI + P LHPGDI++  AV+ P    L+ LY+C+ F QKG R   ++ SG DLDGD
Sbjct: 800  GSNVVITRAPALHPGDIQLANAVNVPSDSPLNRLYNCVCFSQKGARDLPSQLSGGDLDGD 859

Query: 869  LYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAH 928
            LY+V +DE++    K++  P +Y+ +    + RPV Q D+ +FF   M  + LG I N H
Sbjct: 860  LYYVIFDEDM--KLKRTVKPADYSRSLPLDIGRPVKQEDMADFFLTFMKTDQLGVISNRH 917

Query: 929  VVHADHSEYGALDENCILLAELAATAVDFPKTG--KIVTMPAHLKPKLY-PDFMG----- 980
             V+AD    G    +C+ LAEL +TAVD+ KTG    +  P+  +  L+ PDFM      
Sbjct: 918  QVYADQDVMGTECSDCLKLAELCSTAVDYSKTGIPPKLNDPSVPRHSLWRPDFMAPGPHV 977

Query: 981  ------------KEAY---------------QSYKSNKILGRLYR--QSKDAYDEDISVS 1011
                         E Y               + Y+S K  G+LYR    +  +++   ++
Sbjct: 978  KISHRPDDRLGFAEKYIPIEVMDEEDEVTNIKYYESKKACGQLYRAIDERKVFEDIQKLN 1037

Query: 1012 SEVDINPVDIHYDTDLEVPESVD-----FIADAWNQKCSYDGQLNGLLEQYKVN-----R 1061
             + + +P  I +  +     S          DA   +  YD  +  ++ QY  +      
Sbjct: 1038 VQANDSPDVIQHMWEFVKSRSQGIQWQHLRKDALEIQEIYDNNMLDIMHQYSEHPTRPIS 1097

Query: 1062 EEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNAL 1121
            E E+  G+I       S+KQ EL   +K  Y         VF     +C +  +DE +  
Sbjct: 1098 EREVFVGNILGKVGSVSKKQRELCISMKEKYDET-----AVF---IINCIIKVDDEYSEE 1149

Query: 1122 FERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIA 1163
               ++ A + V         SLD +++  AR   L SF ++A
Sbjct: 1150 ALERSIACFAV---------SLDDRKRRGAREEPLKSFRYLA 1182


>gi|154290300|ref|XP_001545747.1| hypothetical protein BC1G_15659 [Botryotinia fuckeliana B05.10]
          Length = 1080

 Score =  291 bits (745), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 238/758 (31%), Positives = 357/758 (47%), Gaps = 128/758 (16%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            + R+ ITP   Y   PE E +NR+LRKY      F+RVTF DE     + + L Y     
Sbjct: 288  IHRVTITPAGFYLDGPEPESNNRILRKYAGNHSNFVRVTFCDE-----DGDRLQY----- 337

Query: 473  VRDITLNSFSQKTRVFKRV-RSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS----ED 527
                   S +    ++  V R +L  GF +  +K+ +L  S S LR  S WF +     D
Sbjct: 338  ------ASNASNDEIYDGVFRKVLQDGFSIGKQKYEYLGSSHSSLRTQSCWFVAPFTQND 391

Query: 528  GKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVF 586
                 L I + +GRF D ++ AKCAAR+GQ FS T  T+ +  T     + DI+RNG VF
Sbjct: 392  IYYDALHITQDLGRFGDIRSPAKCAARIGQAFSDTPNTLTLDETVTVETVADIERNGRVF 451

Query: 587  SDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMN 646
            SDG+G ++  L  ++  +L       P  +QIRY G KG+++   ++  G+++ LRESM 
Sbjct: 452  SDGVGTMSEKLMEKIWDRLPDKYLVKPTCFQIRYRGAKGMIS-LDSRLPGVQLRLRESMI 510

Query: 647  KFQ-SHHTTLEICSWT-RFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDS 704
            KF+ S    LEIC    +  P +LNRQ I +L  L V  E F  +Q   +S+L ++    
Sbjct: 511  KFEGSTSNDLEICGGAYKPLPMYLNRQFIKILEDLGVEPEYFMRLQAKEVSRLREITAS- 569

Query: 705  DVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPH-------------LRGMLTCIRAAQLW 751
              A+   T   +++     ++      PQ   H             LR +L      +L 
Sbjct: 570  --AYNASTFLQSKRVGDVVLL------PQLIEHCSALDLDFRNDLFLRDILEMTVLIELR 621

Query: 752  GLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVI 811
             L+ KARI V  G  L G +DE G+LE G+ +          C+ + G      K+  ++
Sbjct: 622  TLKHKARIPVERGYHLHGIMDETGILEEGEIYC---------CWIEDG------KRTTLV 666

Query: 812  KGFVVIAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGD 868
               VVI + P LHPGDI++  AV+ P    L+ LY+C+ F QKG R   ++ SG DLDGD
Sbjct: 667  GSNVVITRAPALHPGDIQLANAVNVPSDSPLNRLYNCVCFSQKGARDLPSQLSGGDLDGD 726

Query: 869  LYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAH 928
            LY+V +DE++    K++  P +Y+ +    + RPV Q D+ +FF   M  + LG I N H
Sbjct: 727  LYYVIFDEDM--KLKRTVKPADYSRSLPLDIGRPVKQEDMADFFLTFMKTDQLGVISNRH 784

Query: 929  VVHADHSEYGALDENCILLAELAATAVDFPKTG--KIVTMPAHLKPKLY-PDFMG----- 980
             V+AD    G    +C+ LAEL +TAVD+ KTG    +  P+  +  L+ PDFM      
Sbjct: 785  QVYADQDVMGTECSDCLKLAELCSTAVDYSKTGIPPKLNDPSVPRHSLWRPDFMAPGPHV 844

Query: 981  ------------KEAY---------------QSYKSNKILGRLYRQSKDAYDEDISVSSE 1013
                         E Y               + Y+S K  G+LYR    A DE       
Sbjct: 845  KISHRPDDRLGFAEKYIPIEVMDEEDEVTNIKYYESKKACGQLYR----AIDERKVFE-- 898

Query: 1014 VDINPVDIHYDTDLEVPESV-DFI-------------ADAWNQKCSYDGQLNGLLEQYKV 1059
             DI  +++  +   +V + + +F+              DA   +  YD  +  ++ QY  
Sbjct: 899  -DIQKLNVQANDSPDVIQHMWEFVKSRSQGIQWQHLRKDALEIQEIYDNNMLDIMHQYSE 957

Query: 1060 N-----REEELVTGHIWSMPKYNSRKQGELKERLKHSY 1092
            +      E E+  G+I       S+KQ EL   +K  Y
Sbjct: 958  HPTRPISEREVFVGNILGKVGSVSKKQRELCISMKEKY 995


>gi|402078468|gb|EJT73733.1| RNA-dependent RNA polymerase [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1287

 Score =  291 bits (745), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 231/747 (30%), Positives = 361/747 (48%), Gaps = 105/747 (14%)

Query: 325  EEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQS-------REVNVAALKHIYS-- 375
            +  +SF+++F++ A++    ++   L +   DL R          + ++ AA+K +    
Sbjct: 337  DRSVSFDVLFVLQALLFNAYMHPCLLREILCDLRRRHKADTLAGRKPISAAAVKALMEST 396

Query: 376  -YKWPVFDACK-RLKLVQEWLLKDP-------ELYKGPKQIDDIVEVRRLVITPTKAYCL 426
             +  P  D     L  + EW+ +          L  G  Q  ++  + R V+TPT+    
Sbjct: 397  DFPAPYGDPSHFELASIMEWVSEKHVEMESGYALRFGEVQSPNLTNIFRAVVTPTRITLH 456

Query: 427  PPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTR 486
             PEVE  NRVLRK+    D FLRV F DEG                 RD+   +     R
Sbjct: 457  GPEVETKNRVLRKHPGHQDYFLRVQFCDEG----------------SRDLRFETGVSVER 500

Query: 487  VFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS--EDGKTSVL----DIKKWMG 540
            V++R + +L  G  L GR ++FL FS S LR  S WF +   D +T  L     I + +G
Sbjct: 501  VYQRFKDVLLSGIRLPGRIYNFLGFSHSSLRTSSVWFCAAFRDKETGKLVNHKSIIEGLG 560

Query: 541  RFTD-KNIAKCAARMGQCFSSTYATVEVPPTE--VDPELPDI--KRNGYVFSDGIGKITP 595
             F   +  AK AAR+GQ FS T + V +      +   +PDI        FSDG+G ++ 
Sbjct: 561  EFGHIRCPAKLAARIGQAFSETPSVVPLSGYSDILIKHVPDIYSADGRRCFSDGVGSVSE 620

Query: 596  DLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQS-HHTT 654
            ++   +   + +  N P C +QIR+AGCKG++A        I +  R+SM KF S     
Sbjct: 621  EMMRIIWAHVPMKKNAPTC-FQIRHAGCKGMLALDTTLSGKI-IYFRDSMKKFDSIDQED 678

Query: 655  LEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDS-DVAFEVLT 712
            LEIC + ++  P  LNRQ+I +L  +    + F  +Q   L +L  +  ++ +V   + T
Sbjct: 679  LEICDTGSKAIPLVLNRQMIKILEDMGADHKWFLKLQSYRLKELQAVTANAYNVQTFLHT 738

Query: 713  AACAEQGNTAAIMLSA---GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMG 769
            A   +  +    +  A   G + + +P LRG++  +   +L  L+ KARI V  G+ L G
Sbjct: 739  ANVGQPISLGKFIYWAHLNGMDYKKDPFLRGVVEALVLQELRLLKHKARIPVSKGKTLFG 798

Query: 770  CLDELGVLEGGQCFIQ-VSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDI 828
             +DE G+L  GQ ++   SE   G  F K   R +++         V++ ++P LHPGDI
Sbjct: 799  LIDETGLLREGQVYVTFASEKIPG--FQK-PPRHSQS---------VIVTRSPALHPGDI 846

Query: 829  RILEAV----DHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKK 884
            +I+  +    DHP   H  + + F + G R   +  SG DLDGD+Y + WD+ ++P  K+
Sbjct: 847  QIVTNIIPPPDHPLAAH-RNSIFFSRHGSRDLPSMLSGGDLDGDIYNIIWDKEVLP--KQ 903

Query: 885  SWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENC 944
             + P +Y+ A  + + RPV++ DI++ F   M N+NLG I   H++ AD    G L  +C
Sbjct: 904  RFHPADYSNAPPQDIGRPVEREDIVQHFVDFMKNDNLGAIATRHMILADQMVEGTLHPDC 963

Query: 945  ILLAELAATAVDFPKTGKIVTMPAHLKP-KLYPDFMGK--------------EAYQS--- 986
              LAEL +TAVDF KTG  V M    +  +  PDF+                E Y++   
Sbjct: 964  QKLAELHSTAVDFSKTGIPVDMKELPRTNRFRPDFLSPGPIANLHDKDEILMEQYRAPDP 1023

Query: 987  --------------YKSNKILGRLYRQ 999
                          YKS KILG+LYR+
Sbjct: 1024 EEELEHGEPPRFKYYKSGKILGKLYRE 1050


>gi|240276859|gb|EER40370.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H143]
          Length = 1240

 Score =  291 bits (744), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 255/865 (29%), Positives = 381/865 (44%), Gaps = 130/865 (15%)

Query: 217  AILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTP---------SGAIGRC 267
            +I +   ++PR+ Y+T   D+L     DML     W+R                   G C
Sbjct: 205  SITITADTAPRL-YKTDPTDVLAAGLHDMLQIQQKWMRGRPLKTRVGHFGDEHEALAGTC 263

Query: 268  NSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMS---DPFFCIHY 324
              YR  + S     L  V     ER   +  ++R +  R +  ++ P S     F     
Sbjct: 264  FVYRFLLKSS--DDLVVVRDLANER--HIPDIARWVDHRAK--YDAPYSTLMQRFMAFLS 317

Query: 325  EEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG----QSREVNVAALKHIYS-YKWP 379
            +E + + + F +  ++  G I+  + + SF   +R     +  ++ V AL  + S  KWP
Sbjct: 318  QENMPYRVRFQLQKLVWNGDISPAK-AISFASRVRAALVIEDLDIVVRALMRLSSDVKWP 376

Query: 380  VFDA----------CKRLKLVQEWLLKDPELYKGPKQID-DIVEVRRLVITPTKAYCLPP 428
              D            +  K   E   ++ E+ +  + +  + + + R  ITP   Y   P
Sbjct: 377  SPDVEASEVDVPALVEVFKNALESTAREREMTRSNRPMHPNHISIHRAQITPCGTYLDGP 436

Query: 429  EVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVF 488
              E  NRVLR Y    D FLRV F+DE    +  +  +        D+   S        
Sbjct: 437  HAETKNRVLRHYSSHVDHFLRVEFVDETGDPVRYDPRASI------DMIFES-------- 482

Query: 489  KRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVL----DIKKWMGRFTD 544
             R +++L  G  + GRKF FL FS S LR  + WF +   K  +L     I + +GRF  
Sbjct: 483  -RFKTVLKSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNASTIIQNLGRFDH 541

Query: 545  -KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQ 603
             ++ AK AAR+GQ FS T  ++ +    +     D++RNG VFSDG+G I+P +   + +
Sbjct: 542  IQSPAKQAARIGQTFSDTLTSIPISDKYISIG-KDVERNGRVFSDGVGTISPSVMYMIWK 600

Query: 604  KLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHT----TLEIC- 658
               L     P  +QIR AG KG+++   ++  G  + LR SM KF   ++     +EIC 
Sbjct: 601  DHSLRTVVKPTVFQIRLAGAKGMISL-DSRKKGKSLVLRPSMIKFHLPNSYNAFNIEICG 659

Query: 659  SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN----------QMLVDSDVAF 708
            S  +  P FLN Q+I +L  L V D +F  +Q   +S+L           + L D+++A 
Sbjct: 660  SGLKPLPFFLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATSTAKAARFLEDTNIAK 719

Query: 709  EVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLM 768
             V             I+   G     +  LR ++      +L  L+ +ARI VP    L 
Sbjct: 720  SVGLPWLIN------ILEGFGLRHSNDEFLRRVMELAVLIKLRDLKYRARIRVPNAVTLF 773

Query: 769  GCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDI 828
            G +DE G+L+ G+ F            S  G R        ++   VV+ ++P +HPGD+
Sbjct: 774  GIMDETGILKEGEVFC--------TSLSDKGVREV------LVNPRVVVTRSPAMHPGDV 819

Query: 829  RILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS 885
            +I  AVD P    L  L++C+ F Q G R   +  SG DLDGDLY V +D  L+P  K+ 
Sbjct: 820  QIARAVDVPADSPLRQLHNCIAFSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLLP--KRI 877

Query: 886  WPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCI 945
              P EY   + K L R V + DII+FF   M  + LG I   H   AD    G  D  C+
Sbjct: 878  ARPAEYPRVQEKVLGRAVVREDIIDFFVTFMQQDQLGRIATIHQALADRRPLGTFDPECL 937

Query: 946  LLAELAATAVDFPKTGKIVTMPAHLK-PKLYPDFMG------------------------ 980
            LLAEL +TAVDF KTG  V +    K P   PDF                          
Sbjct: 938  LLAELHSTAVDFSKTGVPVDLARIPKFPSCRPDFQAPSPRIRIAENLSLLEGDMDAVQDG 997

Query: 981  -------KEAYQSYKSNKILGRLYR 998
                   + A + YKS  ILG+LYR
Sbjct: 998  GDEDDDERPAVRFYKSENILGKLYR 1022


>gi|290989465|ref|XP_002677358.1| predicted protein [Naegleria gruberi]
 gi|284090965|gb|EFC44614.1| predicted protein [Naegleria gruberi]
          Length = 913

 Score =  290 bits (743), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 210/633 (33%), Positives = 325/633 (51%), Gaps = 74/633 (11%)

Query: 408 DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSY 467
           D++ E+R+++ITPT     P  +E  NRVLRKYK   DRFLRVTF DEGL  ++A     
Sbjct: 304 DNMFEIRKVMITPTGIKYFPKILESGNRVLRKYKQYEDRFLRVTFCDEGLNRVSA----- 358

Query: 468 FIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSED 527
                          + T +  R+   L+ GF +  R +  LA+S+SQLR  S WF + +
Sbjct: 359 --------------EKVTNMHPRLEEFLNNGFTIGNRHYEMLAYSNSQLRSHSCWFLNTE 404

Query: 528 G--KTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEV-DPELPDIKRNG 583
           G  + SV  I + +G F+D K +AK AAR+GQCFS+T+  ++    EV D    +I+RNG
Sbjct: 405 GIRELSVSSIIEGLGDFSDIKVMAKYAARIGQCFSNTFNGIKSEFIEVNDIVYREIERNG 464

Query: 584 ----YVFSDGIGKITPDLAMEVAQKLKLDVNPP---PCAYQIRYAGCKGVVACWPAKGD- 635
                V +DG G+++   A +V++++K+ ++     P A Q R  G KGVV       D 
Sbjct: 465 DIKENVLNDGCGRMSVSFAEQVSKQMKIRIHGKAYIPSALQFRLGGYKGVVVQDKDVADI 524

Query: 636 -GIRMSLRESMNKFQSHHT-TLEICSWTRFQPGF--LNRQIITLLSTLNVPDEMFWSMQD 691
            G  + L +S NKF+   +   E+ ++++ +P F  LNRQII LLS+  +PD       D
Sbjct: 525 FGKDLVLTKSQNKFKDEKSDEFEMVAFSK-RPKFSSLNRQIIILLSSNGLPDSALMKFVD 583

Query: 692 S-------------MLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHL 738
                          + KL + + ++ V   +     +E  +  A +L++     ++ H+
Sbjct: 584 REIETWRSRTTKKLSIRKLLRKVWENVVGSNIKKVISSEYLDLKAQVLASQVKGMSQQHV 643

Query: 739 RGM-----LTC-----IRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVS- 787
                   L C     I   Q   L  K  + V     LMG +D  GVLE  + F+Q+S 
Sbjct: 644 EYFYNVDPLLCTLCDKILINQFSSL--KTNLPVDKCSLLMGVVDFYGVLEDDEVFVQLSS 701

Query: 788 -EPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE---LHHLY 843
            E +  + +   GS +AE     ++ G V + +NPCLHPGD+R  +AV       L HL 
Sbjct: 702 FESYERDLYDP-GS-YAEGG---IVSGNVFVTRNPCLHPGDVRKFKAVSDDRINVLKHLK 756

Query: 844 DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPV 903
           D +VF QK  +   ++ SG DLDGDL+ V WD  L+  ++    PM++   +        
Sbjct: 757 DVIVFSQKSKQSQASKMSGGDLDGDLFMVCWDPELLNFTEH--KPMKHTQLKPLEKNDGF 814

Query: 904 DQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKI 963
           D + I +F  +++VN+NLG +   H+ H D S  GALD+NC+ LA+  +  VD+ KTG  
Sbjct: 815 DYKAIRDFLKEYVVNDNLGVVAFMHMEHYDQSSKGALDQNCLDLADYHSHQVDYAKTGVR 874

Query: 964 VTMPAHLKPKLYPDFMGKE-AYQSYKSNKILGR 995
             +P  L  +  P +M K    ++Y S KI+G+
Sbjct: 875 KALPMELVSEYRPHYMPKSFMKKTYHSTKIIGK 907


>gi|225678504|gb|EEH16788.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 1262

 Score =  289 bits (740), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 230/712 (32%), Positives = 330/712 (46%), Gaps = 121/712 (16%)

Query: 361  QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQID-DIVEVRRLVIT 419
            Q+ EV+V AL  +++                E +L++  L +  +QI  + + + R  +T
Sbjct: 378  QASEVDVVALMKLFANAL-------------EIVLRERALSRSNRQIHLNNILIHRAQVT 424

Query: 420  PTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLN 479
            P   Y   P++E  NRVLR Y+   D FLRV F+DE     + + + Y           +
Sbjct: 425  PCGIYLYGPQLETKNRVLRIYEANVDHFLRVEFVDE-----SGDPIRY-----------D 468

Query: 480  SFSQKTRVFK-RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE--DGKT--SVLD 534
            S +    +F+ R + +L  G  + GRKF FL FS S LR  + WF +    G T  +   
Sbjct: 469  SRASVDAIFQSRFKGVLKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGGTLYNATV 528

Query: 535  IKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKI 593
            I + +GRF    + AK AAR+GQ FS T  ++ +   ++     D++RNG VFSDG+G I
Sbjct: 529  IIQNLGRFDHIHSPAKQAARIGQTFSDTLTSIPIS-FDMLSVGEDVERNGRVFSDGVGTI 587

Query: 594  TPDLAMEVAQKLKLDVNPPPCAYQIRYA-----------------------GCKGVVACW 630
            +P L  E+ +   L     P  +QIR A                       G KG++A  
Sbjct: 588  SPSLMYEIWKDHSLRAKVKPTVFQIRVAAPEPLLAGFHAYRGILLTETWFIGAKGMIALD 647

Query: 631  PAKGDGIRMSLRESMNKFQSHHTT----LEIC-SWTRFQPGFLNRQIITLLSTLNVPDEM 685
              K  G  + LR+SM KF    T     +E+C S  +  P FLN Q+I +L  L V    
Sbjct: 648  STK-TGKSLMLRKSMVKFPVPETVGGLNIELCGSGLKALPFFLNAQLIKILEDLGVEQSA 706

Query: 686  FWSMQDSMLSKLNQMLVDSDVAFEVL--TAACAEQGNTAAIMLSAGF--NPQTEPHLRGM 741
            F  +Q   + +L      +  A   L  T      G    I +  GF  +   +  LR +
Sbjct: 707  FLKLQADEIERLRATAPSTAQAARFLEDTHIAKSIGLPWLISILEGFRLSHTNDEFLRRV 766

Query: 742  LTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSR 801
            +      +L  L+ +ARI VP    L G +DE G+L+ G+ F            S+ G R
Sbjct: 767  MELAVLIKLRDLKYRARIRVPNAVTLFGIMDETGILKEGEIFCV--------TLSEDGHR 818

Query: 802  FAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTN 858
                    +++  VV+ ++P +HPGD+++  AVD P    L  L++C+ F Q GDR   +
Sbjct: 819  EV------LVRPRVVVTRSPAMHPGDVQVARAVDVPADSPLRQLHNCIAFSQYGDRDLPS 872

Query: 859  EASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVN 918
              SG DLDGDLY V +DE LIP  K + PP EY   E K L RPV   DII+FF   M  
Sbjct: 873  MLSGGDLDGDLYNVIYDETLIP--KITVPPAEYPRVEEKVLNRPVVTDDIIDFFVTFMQQ 930

Query: 919  ENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK-PKLYPD 977
            + LG I   H   AD  + G  DE C+LLAEL +TAVDF K+G  V +    K P+  PD
Sbjct: 931  DQLGRIATIHQAIADQRDRGTFDEQCLLLAELHSTAVDFSKSGVPVDLARIPKFPRYRPD 990

Query: 978  FMG-------------------------------KEAYQSYKSNKILGRLYR 998
            F                                 +   + YKS KILG+LYR
Sbjct: 991  FQAHGPRVRIAESLSLHEEDEETTVHDLDDEDDERPPTRFYKSYKILGKLYR 1042


>gi|358378399|gb|EHK16081.1| hypothetical protein TRIVIDRAFT_10390, partial [Trichoderma virens
            Gv29-8]
          Length = 1247

 Score =  289 bits (740), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 245/798 (30%), Positives = 367/798 (45%), Gaps = 116/798 (14%)

Query: 403  GPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNA 462
            GP+  +    V ++++TPT+     P+ E  NRVLR +   +D F RV F DE  Q    
Sbjct: 416  GPQLPEHQAWVLKVMVTPTRIMLHGPDGENKNRVLRMFPQHSDYFARVIFGDEDGQ---- 471

Query: 463  NVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAW 522
                        D+ L      + +F+R R I+  G ++ GRKF FL FS S LR  SAW
Sbjct: 472  ------------DLALLPSVNNSAIFERYRKIMKDGIHVAGRKFEFLGFSHSSLRSHSAW 519

Query: 523  F---FSEDGKTSVLD-IKKWMGRFTDKNI-AKCAARMGQCFSSTYATVEVPPTEVDPE-L 576
            F   F +  +    D I + +G F+D  I AKCAAR+GQ FS T   V++    +  + +
Sbjct: 520  FCAPFVDKMELQNNDSIIRSLGDFSDIRIPAKCAARIGQAFSETPYAVDILKCGIGIKYI 579

Query: 577  PDIKR--NGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKG 634
            PD+K      VFSDG+G I+ D   E+  +L ++ + P C +Q+R  G KG+++      
Sbjct: 580  PDVKTADGKRVFSDGVGTISWDAMEEIWDRLPMNNSAPTC-FQVRLGGIKGMLSLDSRLK 638

Query: 635  DGIRMSLRESMNKF-QSHHTTLEICSWTRFQPG--FLNRQIITLLSTLNVPDEMFWSMQD 691
              +    +ESM KF  S  TTL IC  T  +P    LNRQ I +L  +    E F   Q+
Sbjct: 639  GKVICIRKESMMKFPSSDQTTLGICD-TASKPLRLVLNRQTIKILEDMGTNFEWFIDQQN 697

Query: 692  SMLSKLNQM--------------LVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPH 737
              L  L  +              LV ++V F  L             +   G + + +  
Sbjct: 698  KALDVLRNVTASASNTSTFLESQLVGTNVGFPKLIK----------YLNKVGIDYRRDKF 747

Query: 738  LRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSK 797
            ++ ++      +L  L+ KARI V  G  L G +DE G LE GQ ++        + + K
Sbjct: 748  MKKVVDHTILRELRLLKHKARIPVDQGVTLFGIMDETGFLEEGQIYVT-----FDSSYDK 802

Query: 798  HGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD---CLVFPQKGDR 854
               R   + K     GFV+I ++P LHPGDI++ + +  P  H L D   C+VF QKG R
Sbjct: 803  AQGRVKGSLK----DGFVLITRSPALHPGDIQLAQVMTPPHGHPLRDLRNCVVFSQKGSR 858

Query: 855  PHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAK 914
               ++ SG DLDGDLY + WD  +IP  K  + P +Y       L R V + DI +FF K
Sbjct: 859  DLPSQLSGGDLDGDLYSIFWDPFVIP--KSYFTPADYPRVTPPALDRVVTREDIADFFVK 916

Query: 915  HMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK-PK 973
             M  + LG I N H + AD  + G +D+ C  LAEL +TAVD+ KTG  VT+    K P+
Sbjct: 917  FMETDILGMIANRHQIFADFKDEGTVDQVCTNLAELHSTAVDYSKTGIPVTIQQLPKAPR 976

Query: 974  LYPDF------------------------------MGKEAYQSYKSNKILGRLYR--QSK 1001
            L PDF                              MG      YKS KILG LYR    +
Sbjct: 977  LRPDFLAPAPPTRLYDRGEVSHIGDPESDEDDEDGMGASKKGYYKSQKILGELYRGVDEE 1036

Query: 1002 DAYDEDISVSSEVDINPV--DIH---YDTDLE---VPESVDF---IADAWNQKCSYDGQL 1050
              + +D+    E+  + +  D++   Y   +E   V   VD+   + +AW  +  Y  Q+
Sbjct: 1037 KIWGQDVQRPVEMSGSSLWEDLNKHVYAALMEEGCVASDVDYTRRVEEAWKLRELYQTQV 1096

Query: 1051 NGLLEQYKVN-----REEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEK 1105
            +  + Q+  +     RE E   G I +     +R+Q +   +LK     +   F ++   
Sbjct: 1097 SNSMWQFSDSPRVPIREVEAFCGSILNPKGSQTRRQRDSSIKLKEEMDRIMNFFAKLIRD 1156

Query: 1106 MDSDCELLSEDEKNALFE 1123
                   +++D  +   E
Sbjct: 1157 RSGGALGIADDAASVATE 1174


>gi|327354796|gb|EGE83653.1| RNA-dependent RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1240

 Score =  289 bits (740), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 214/645 (33%), Positives = 305/645 (47%), Gaps = 96/645 (14%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V + R+ +TP   Y   P +E  NRVLR+Y +  D FLRV FMDE    +  +  +    
Sbjct: 419  VSIHRVQVTPCGIYLDGPYMESKNRVLRRYANHVDHFLRVEFMDESGDPVRYDPRASI-- 476

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FSED 527
                D+            +R + +L  G  + GRKF FL FS S LR  + WF   F  D
Sbjct: 477  ----DLIFQ---------QRFKGVLKNGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYAD 523

Query: 528  GKT-SVLDIKKWMGRFTDKNI-AKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYV 585
            G   +   I + +GRF   N  AK AAR+GQ FS T  ++ +   E+   + D+KRN  V
Sbjct: 524  GILYNATTIIQNLGRFDHINSPAKQAARIGQTFSETLTSIPI-SEEIISVVQDVKRNDRV 582

Query: 586  FSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRY-AGCKGVVACWPAKGDGIRMSLRES 644
            FSDG+G I+P +   + +   L     P  +QIR  AG KG+V+   ++  G  + LR S
Sbjct: 583  FSDGVGTISPSVMYMIWKDYSLRTMVKPTVFQIRIAAGAKGMVSL-DSRNKGESLVLRPS 641

Query: 645  MNKFQSHHT----TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN- 698
            M KF    +     +EIC S  R  P FLN Q+I +L  L V   +F  +Q   + +L  
Sbjct: 642  MIKFPVTTSFNAYNIEICGSGIRSLPFFLNAQLIKILEDLGVDGNVFLKLQRDEILRLRA 701

Query: 699  ---------QMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQ 749
                     + L D+++A  V            +I+ + G     +  LR ++  +   +
Sbjct: 702  TATSTTQAAKFLEDTNIAKSVGLPWL------ISILEALGLRHSDDEFLRRVMELVVLIK 755

Query: 750  LWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQ 809
            L  L+ +ARI VP    L G +DE G L+ G+ F            S  G R        
Sbjct: 756  LRDLKYRARIRVPKAVTLFGIMDETGYLKEGEIFC--------TSLSDKGRREV------ 801

Query: 810  VIKGFVVIAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLD 866
            ++   VV+ ++P +HPGD++I +AVD P    L  L++C+ F Q GDR   +  SG DLD
Sbjct: 802  LLNPKVVVTRSPAMHPGDVQIAKAVDVPADSPLRQLHNCIAFSQHGDRDLPSMLSGGDLD 861

Query: 867  GDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICN 926
            GDLY V +++ LIP  +   PP +Y   + K L RPV + DII+FF   M  + LG I  
Sbjct: 862  GDLYNVIFEDTLIP--RVISPPAQYPRVQEKVLDRPVVRDDIIDFFVTFMQQDQLGRIAT 919

Query: 927  AHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK-PKLYPDFMG----- 980
             H   AD    G  D  C+LLAEL +TAVDF K+G  V +    K P+  PDF       
Sbjct: 920  VHQTIADQKALGTFDPQCLLLAELHSTAVDFSKSGVPVDLARIPKFPRYRPDFQAPGPRV 979

Query: 981  ---------------------------KEAYQSYKSNKILGRLYR 998
                                       +   + YKS KILG+LYR
Sbjct: 980  RIAESLSLLEEHDQMTVLDDDDDEEDERPTARYYKSEKILGKLYR 1024


>gi|407917163|gb|EKG10484.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
            MS6]
          Length = 1221

 Score =  289 bits (739), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 210/650 (32%), Positives = 317/650 (48%), Gaps = 80/650 (12%)

Query: 400  LYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQT 459
            +Y   K+   I  + R++ITP   Y   PE E+SNRVLRKY +  D FLRV F+DE    
Sbjct: 416  IYDVNKRHKHIALIHRVIITPAGTYLEGPEPEVSNRVLRKYPEHTDNFLRVQFVDE---- 471

Query: 460  MNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDC 519
               + + Y     + +I  N F          +S+L G   + G  F+FL FS S LR  
Sbjct: 472  -EGDAIRYEPKTSLGEIFHNRF----------KSVLDGEINIGGHSFAFLGFSHSSLRSQ 520

Query: 520  SAWFFSE-DGKTSVL---DIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDP 574
            + WF +    K S++   ++ K +G F+  ++ AKCAAR+GQ FS T  TV V   E+  
Sbjct: 521  TCWFMAPFVQKLSLIAAQEVIKGLGDFSKIRSPAKCAARIGQAFSDTSGTVTVN-EEIIK 579

Query: 575  ELPDIKRN-GYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAK 633
             + D++ + G++FSDG+GKI+  L   V ++ +      P   QIR+ G KGVV+    +
Sbjct: 580  MIDDVRNDRGHIFSDGVGKISYKLLKRVWKEYQQARGQRPTCLQIRFGGAKGVVSL-DDR 638

Query: 634  GDGIRMSLRESMNKFQSHHT-TLEICSWT-RFQPGFLNRQIITLLSTLNVPDEMFWSMQD 691
              G ++ LR SM KF    T  +EIC    R  P +LNRQ I +L  L VP ++F  +Q 
Sbjct: 639  LPGEQLVLRPSMVKFYGAGTWNIEICGANFRPLPMYLNRQFIKILEDLGVPAQVFLDLQS 698

Query: 692  SMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSA----GFNPQTEPHLRGMLTCIRA 747
            +M+ +L ++      A   L  A   Q      +L      GF+   +  L  ++     
Sbjct: 699  AMVEQLRRITKSPVNAATFLEHARVGQATRMPHLLRMLDELGFSFNEDEFLSHVVEIAAL 758

Query: 748  AQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKK 807
            +QL  ++ ++RI V  G  L G +DE G L   + +          C  +        K+
Sbjct: 759  SQLRDIKHRSRIQVDRGVTLYGIMDETGFLGEDEIY----------CVIERIGDNGRPKR 808

Query: 808  LQVIKGFVVIAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSD 864
              +  G V++ ++P +HPGD++   AVD P    L  L + +VF  KG R   ++ SG D
Sbjct: 809  TVLSGGEVIVTRSPAMHPGDVQKARAVDVPPDSPLQALSNVVVFSSKGQRDLPSQLSGGD 868

Query: 865  LDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTI 924
            LDGDLY V +D  L+P  + ++ P +Y       + RPV ++DI +FF K M  + LG I
Sbjct: 869  LDGDLYNVIFDRRLMP--RVTYQPADYKKVPPLDIGRPVTRQDITDFFVKFMETDQLGRI 926

Query: 925  CNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY-PDFMGK-- 981
             N H+  AD    G LD +C+ LAE+A+ AVDF KTG  V M    +  +  PDFM    
Sbjct: 927  SNIHMQLADRRPNGTLDPDCLKLAEMASIAVDFSKTGIPVDMSQCPRVDMIRPDFMANGP 986

Query: 982  ---------------------------------EAYQSYKSNKILGRLYR 998
                                             + ++ Y+S ++LG+LYR
Sbjct: 987  RVIVEKKGAVFQDEDEDDLLDDDDAVGALDPDFKTFRYYESERVLGQLYR 1036


>gi|212537491|ref|XP_002148901.1| RNA-dependent RNA polymerase, putative [Talaromyces marneffei ATCC
           18224]
 gi|210068643|gb|EEA22734.1| RNA-dependent RNA polymerase, putative [Talaromyces marneffei ATCC
           18224]
          Length = 1207

 Score =  288 bits (738), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 197/590 (33%), Positives = 296/590 (50%), Gaps = 56/590 (9%)

Query: 411 VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
           +E+ RL +TPT  Y   P VE  NRVLRKY++ +D+F+RV F++E               
Sbjct: 415 MEIHRLSVTPTGLYLDGPNVEAENRVLRKYRNQSDQFIRVRFIEESGD------------ 462

Query: 471 PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE--DG 528
           P++ DI+    S    +F R R +L  G  +  R + FL FS S LR  S WF +E  D 
Sbjct: 463 PLMYDIS----SNLDPIFDRFREVLRDGVIIADRHYRFLGFSHSSLRSRSCWFMAEFHDS 518

Query: 529 KTS-VLDIKKWMGRFTD----KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG 583
            T   + + K + +  D    K  +K AAR+GQ FS T  ++ V    V   + D++RNG
Sbjct: 519 VTGEFITVNKLISKLGDFDHIKAPSKFAARLGQTFSDTLTSISVDKDMVK-RIDDVERNG 577

Query: 584 YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRE 643
            VFSDG G I+ ++   + +    +    P  +Q+R +G KG+++  P    G  + LR+
Sbjct: 578 RVFSDGCGTISKEILWRIYRDYPRNAAVRPTVFQVRISGAKGMLSLDPTL-KGPTICLRD 636

Query: 644 SMNKFQSH-HTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
           SM KF++     +EIC S     P +LN  +I +L  L VP ++F  +Q   +  L Q +
Sbjct: 637 SMIKFRAEADNNIEICGSGIHSLPCYLNAPLIKILEDLGVPRDLFLELQREEVESLRQTV 696

Query: 702 VDSDVAFEVLTAACAEQGNTAA----IMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKA 757
                A   L  A   +    +    ++ S G N   +  L+  +  +   +L  L+ KA
Sbjct: 697 RSPQHAAVFLDQAHISKSTRLSWLITLLQSMGVNYNQDGFLKRAVELVILMKLRDLKYKA 756

Query: 758 RIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV-IKGFVV 816
           RI VP G  L G +DE G L+ G+ F+    P L            ETK+  + ++  V+
Sbjct: 757 RILVPDGVTLYGIMDETGYLKEGEIFV----PILNE----------ETKRRDILVQDDVL 802

Query: 817 IAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVT 873
           I ++P  HPGD+++  AV+ PE   L  L++C+VF QKG R   ++ SG DLDGD++ + 
Sbjct: 803 ITRSPAFHPGDVQLANAVNVPEDSPLRKLHNCVVFSQKGTRDLPSQLSGGDLDGDIFNII 862

Query: 874 WDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHAD 933
           +D       ++   P +Y       L RPV   DI +FF   M  + LG I   H + AD
Sbjct: 863 YDPRF--RLRRLAKPADYPRVPGTELGRPVQIDDIQDFFVTFMQQDQLGRIATTHKILAD 920

Query: 934 HSEYGALDENCILLAELAATAVDFPKTGK---IVTMPAHLKPKLYPDFMG 980
               G  D NC+ LA+L +TAVDF KTG    I  +P +  P   PDFM 
Sbjct: 921 QQVKGTFDPNCLTLAQLHSTAVDFSKTGTPVDIKMIPRY--PPYRPDFMA 968


>gi|308476844|ref|XP_003100637.1| hypothetical protein CRE_20435 [Caenorhabditis remanei]
 gi|308264655|gb|EFP08608.1| hypothetical protein CRE_20435 [Caenorhabditis remanei]
          Length = 1685

 Score =  288 bits (738), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 249/864 (28%), Positives = 387/864 (44%), Gaps = 156/864 (18%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            VR++V TPT+   + PE  + NRVLR+Y     R LR+TF D+  Q M  N  S  +   
Sbjct: 545  VRKIVFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTSMLLD-- 602

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE------ 526
                            K V + L  G  + GR F +L  S+SQ+RD  A+F  +      
Sbjct: 603  ----------------KTVHTYLRDGITVAGRDFGYLGSSNSQMRDNGAYFMEKYSSSQC 646

Query: 527  -------------DGKTSVLDIKKWMGRF-TDKNIAKCAARMGQCFSSTY---ATVEVPP 569
                         D    +   +K +GRF T  NI K  AR+GQCF+ +      +E   
Sbjct: 647  REYQSRTGVKPPIDFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLERCT 706

Query: 570  TEVDPEL---PDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGV 626
                 +L    ++KR+ Y FSDG+G ++   A  V+  +      P C +Q R+ G KGV
Sbjct: 707  YMTTYDLTGGKNVKRDEYTFSDGVGMMSHHFAQMVSHVMDFGKGVPSC-FQFRFRGMKGV 765

Query: 627  VACWPAKGDGIRM--------------------SLRESMNKFQSHH---TTLEICSWTRF 663
            +A  P   D IR                       R S  KF S       +EI  ++  
Sbjct: 766  IAVEPLL-DNIRQWFLENGIPEASEETSWNLNCVFRPSQIKFISKRHPRDQVEIVKYSSP 824

Query: 664  QPGFLNRQIITLLSTLN----------VPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTA 713
             P  LN+  I +L  ++          V + +   +   MLS   QM VD       L  
Sbjct: 825  VPVALNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLSFAQQM-VDETFCRNRL-K 882

Query: 714  ACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCL 771
                + +   +  S GF   +EP  R ++       +     K +I +P+  GR ++G +
Sbjct: 883  ELPRRIDIDYLRTSWGFTLSSEPFFRSLIKASIKFSITRQLRKEQIPIPSELGRSMLGVV 942

Query: 772  DELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRIL 831
            DE G L+ GQ F+Q ++        K+ +R       +V+ G V++ KNPC+  GD+R+ 
Sbjct: 943  DETGRLQYGQIFVQYTKNLALKLPPKNAAR-------EVLTGTVLLTKNPCIVAGDVRVF 995

Query: 832  EAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEY 891
            EAVD PELHH+ D +VFPQ G RPH +E +GSDLDGD Y + WD+ L+    K+  P ++
Sbjct: 996  EAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLL--LDKNEIPFDF 1053

Query: 892  NAAEAKTLTRPVDQRDII-EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAEL 950
             + + KT  +  D   ++ EF+ K++  +++GTI N+H+ ++D  +YG     C+ LA+ 
Sbjct: 1054 TSEKQKTEFKEEDIDALMREFYVKYLKLDSVGTISNSHLHNSD--QYGLNSRVCMDLAKK 1111

Query: 951  AATAVDFPKTGKIVTMPAHLKPK-----------------LYPDF-MGKEAYQSYKSNKI 992
               AVDF K+G+    P  L+ K                   PD+ MG +    Y S ++
Sbjct: 1112 NCQAVDFTKSGQ---PPDELEKKWRRDEETGEMIPPERAERVPDYHMGNDHAPMYVSPRL 1168

Query: 993  LGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNG 1052
             G+L+R+ K A D+ + +S E D   V+I  D  + +    +++  A      Y+ QL  
Sbjct: 1169 CGKLFREFK-AIDDVLKISEERD-EQVEITIDETMMIDGYKEYMHSAREDLSRYNAQLRS 1226

Query: 1053 LLEQYKVNREEELVTGHIWSMPK------------YNSRKQGELKERLKHSYSALRKEFR 1100
            ++E Y +  E E+ +G I  M              YN+ +  E K  + + +   R+ F 
Sbjct: 1227 MMENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQMIETK--VTNLFKKYREHFF 1284

Query: 1101 QVFE-KMDSDCELLSE--DEKNAL----------FERKASAWYQVTYHPEWVKKSLDLQE 1147
            + FE    ++ E+ S    E N L            RKA AWY+  Y           +E
Sbjct: 1285 EEFEGGWQANTEVTSRHGSETNILQRQCRAPSNRMMRKAVAWYRACY-----------EE 1333

Query: 1148 QDSARSVVLLSFAWIANDYLARIK 1171
                R    LSFAW+  D L  +K
Sbjct: 1334 ARITRENKKLSFAWLMFDVLGMVK 1357


>gi|17506499|ref|NP_492132.1| Protein EGO-1 [Caenorhabditis elegans]
 gi|8886068|gb|AAF80367.1| RNA-directed RNA polymerase related EGO-1 [Caenorhabditis elegans]
 gi|14530420|emb|CAB01701.2| Protein EGO-1 [Caenorhabditis elegans]
          Length = 1632

 Score =  288 bits (738), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 238/859 (27%), Positives = 388/859 (45%), Gaps = 146/859 (16%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            VR+++ TPT+   + PE  + NRVLR+Y     R LR+TF D+  Q M  N  S      
Sbjct: 491  VRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTS------ 544

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTS- 531
                        T + K V   L  G  + GR F +L  S+SQ+RD  A+F  +   +  
Sbjct: 545  ------------TMLEKTVNQYLKNGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQC 592

Query: 532  ------------------VLDIKKWMGRF-TDKNIAKCAARMGQCFSSTY---ATVEVPP 569
                              +   +K +GRF T  NI K  AR+GQCF+ +      +E   
Sbjct: 593  REYERIYQIKPPITFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLERCT 652

Query: 570  TEVDPEL---PDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGV 626
                 +L    ++K + Y FSDG+G ++   A  V++ +      P C +Q R+ G KGV
Sbjct: 653  YMTTYDLTGGKNLKGDEYTFSDGVGMMSYRFAQMVSEVMDFGKGVPSC-FQFRFRGMKGV 711

Query: 627  VACWPAKGDGIRM--------------------SLRESMNKFQSHH---TTLEICSWTRF 663
            ++  P   D +R                       R S  KF S       +EI  ++  
Sbjct: 712  ISIEPLL-DNLRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSSP 770

Query: 664  QPGFLNRQIITLLSTLN----------VPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTA 713
             P  LN+  I +L  ++          V + +   +   MLS   Q +VD       L  
Sbjct: 771  VPVALNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLS-FAQQMVDETFCRNRL-K 828

Query: 714  ACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCL 771
                + +   +  + GF   +EP  R ++       +     K +I +P   GR ++G +
Sbjct: 829  ELPRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITRQLRKEQIPIPCDLGRSMLGVV 888

Query: 772  DELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRIL 831
            DE G L+ GQ F+Q ++        K+ +R       QV+ G V++ KNPC+  GD+RI 
Sbjct: 889  DETGRLQYGQIFVQYTKNLALKLPPKNAAR-------QVLTGTVLLTKNPCIVAGDVRIF 941

Query: 832  EAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEY 891
            EAVD PELHH+ D +VFPQ G RPH +E +GSDLDGD Y + WD+ L+    K+  P ++
Sbjct: 942  EAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLL--LDKNEDPYDF 999

Query: 892  NAAEAKTLTRPVDQRDII-EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAEL 950
             + + K   +  +  D++ EF+ K++  +++G I N+H+ ++D  +YG     C+ LA+ 
Sbjct: 1000 TSEKQKASFKEDEIDDLMREFYVKYLKLDSVGQISNSHLHNSD--QYGLNARVCMDLAKK 1057

Query: 951  AATAVDFPKTGK--------------IVTMPAHLKPKLYPDF-MGKEAYQSYKSNKILGR 995
               AVDF K+G+                 M    + +  PD+ MG +    Y S ++ G+
Sbjct: 1058 NCQAVDFTKSGQPPDELERKWRKDEETGEMIPPERAERVPDYHMGNDHTPMYVSPRLCGK 1117

Query: 996  LYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLE 1055
            L+R+ K A D+ + +S E D   V+I  D  +++    +++A A N    Y+ QL  ++E
Sbjct: 1118 LFREFK-AIDDVLKISEERD-EQVEISIDETIKIDGYTEYMASAKNDLARYNAQLRSMME 1175

Query: 1056 QYKVNREEELVTGHIWSMPKYNSRKQGE------LKERLKHSYSALRKEFRQV------- 1102
             Y +  E E+ +G I  M    S K  +        + ++   + L K++R++       
Sbjct: 1176 NYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFFNTNQMIETKLTNLFKKYREIFFEEFEG 1235

Query: 1103 --------FEKMDSDCELLSEDEKNALFE--RKASAWYQVTYHPEWVKKSLDLQEQDSAR 1152
                    F +   D  +L    +    +  +KA AWY+  Y           +E    R
Sbjct: 1236 GWEGNTEAFSRYGRDSNILQRQCRAPTVQMMKKAVAWYRACY-----------EEARITR 1284

Query: 1153 SVVLLSFAWIANDYLARIK 1171
                LSFAW+A D +A++K
Sbjct: 1285 ENKKLSFAWLAYDVIAKVK 1303


>gi|14475571|emb|CAC41975.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
          Length = 1964

 Score =  288 bits (737), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 227/775 (29%), Positives = 371/775 (47%), Gaps = 93/775 (12%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            +R + ITP++   + P ++ S R +RK+   +  F+ V  ++E L+ +      +   P+
Sbjct: 765  IRDVFITPSRTIFIQPTLQRSCRAVRKFG--SSNFIMVKIVNESLEPLQGVNNKH---PL 819

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
              +              R++ IL GG  + G+ +S+   S+SQLR+ S+WF S    T  
Sbjct: 820  HEN--------------RIKPILEGGILVGGKIYSYAGNSNSQLREYSSWFVSNQIGTHT 865

Query: 533  LDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGK 592
              +K W G     N+ K    +G  FS+T  TV +P   +   + DI RN +VF++G G+
Sbjct: 866  --VKIWSGIEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRI-YRIQDITRNTHVFTEGCGE 922

Query: 593  ITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQ--- 649
            I P+LA  + +    +  P  CAYQ+R  G KG++       D   + +R SM KF    
Sbjct: 923  IGPELAKHLNENY--NFRPSTCAYQVRIGGNKGMLVVNNQAPDPSGIYIRPSMVKFNPIV 980

Query: 650  --SHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA 707
                H TLEICS +      LNRQ+I+LLSTL   D +F+++QD  L+++ Q++ D++ +
Sbjct: 981  CGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNAS 1040

Query: 708  FEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWL 767
             + +     +        ++ G   Q +P++R +L  +   ++  +++K  I +   R L
Sbjct: 1041 KQAIVEFFPD--------ITEGELYQ-DPYIRRILISLYKLKMERIQQKCHIEIKDSRML 1091

Query: 768  MGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGD 827
            +G  D    L     F+Q+ E          G ++      +VI+G V++ KNPC HPGD
Sbjct: 1092 LGVCDPTNSLPPNTVFVQLEEEDED---DDDGRKYE-----KVIEGLVMVIKNPCTHPGD 1143

Query: 828  IRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWP 887
            +R L+AVD+  L HL + LVF  KGD P+  E SGSDLDGD YF  +D++LI    KS  
Sbjct: 1144 VRYLKAVDNLRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSKSET 1203

Query: 888  P------MEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALD 941
                   +  N  +A     P     +   ++ ++  + LG + N+H+  +D   +GA  
Sbjct: 1204 AYLGDETVSNNDKKANVFNDPF---ALSSMYSTNVERQELGKMYNSHLAISDL--FGANH 1258

Query: 942  ENCILLAELAATAVDFPKTGKIVTMPAH----LKPKLYPDFMGKEAYQS--YKSNKILGR 995
            E  I +++     +D+PKTG   T+P      LK K YP +M +E      Y+S  I+G+
Sbjct: 1259 EFSIQISKECFKEIDYPKTGIHGTIPKEANVWLKTKGYPHYMQRENSTRVYYQSKTIMGK 1318

Query: 996  LYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLE 1055
            +Y    D  D+ + +    D  P +I  D    V +   ++  A      Y  Q++ LL 
Sbjct: 1319 MY----DQIDQLVYIG---DFLP-NISLDKSNLVDDYEIYLNSAKILYSQYKLQVHSLLR 1370

Query: 1056 QYKVNREEELVTGHI---WSMPKYNSRKQGELKERLKHSYSALRKEFRQVF-EKMDSDCE 1111
             Y    EE ++ G +   +   K +   +GE+K            EF + F E+   +C 
Sbjct: 1371 HYSAESEESIMIGFLDQGFISDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENCL 1430

Query: 1112 LLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDY 1166
            L+         E+K SAWY V Y         DL++ D A     L F WIA  +
Sbjct: 1431 LIHR----VNIEKKVSAWYHVAYS--------DLKD-DRA-----LGFYWIARSF 1467


>gi|66802840|ref|XP_635263.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
 gi|60463423|gb|EAL61608.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
          Length = 2403

 Score =  288 bits (737), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 227/775 (29%), Positives = 371/775 (47%), Gaps = 93/775 (12%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            +R + ITP++   + P ++ S R +RK+   +  F+ V  ++E L+ +      +   P+
Sbjct: 1208 IRDVFITPSRTIFIQPTLQRSCRAVRKFG--SSNFIMVKIVNESLEPLQGVNNKH---PL 1262

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
              +              R++ IL GG  + G+ +S+   S+SQLR+ S+WF S    T  
Sbjct: 1263 HEN--------------RIKPILEGGILVGGKIYSYAGNSNSQLREYSSWFVSNQIGTHT 1308

Query: 533  LDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGK 592
              +K W G     N+ K    +G  FS+T  TV +P   +   + DI RN +VF++G G+
Sbjct: 1309 --VKIWSGIEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRI-YRIQDITRNTHVFTEGCGE 1365

Query: 593  ITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQ--- 649
            I P+LA  + +    +  P  CAYQ+R  G KG++       D   + +R SM KF    
Sbjct: 1366 IGPELAKHLNENY--NFRPSTCAYQVRIGGNKGMLVVNNQAPDPSGIYIRPSMVKFNPIV 1423

Query: 650  --SHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA 707
                H TLEICS +      LNRQ+I+LLSTL   D +F+++QD  L+++ Q++ D++ +
Sbjct: 1424 CGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNAS 1483

Query: 708  FEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWL 767
             + +     +        ++ G   Q +P++R +L  +   ++  +++K  I +   R L
Sbjct: 1484 KQAIVEFFPD--------ITEGELYQ-DPYIRRILISLYKLKMERIQQKCHIEIKDSRML 1534

Query: 768  MGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGD 827
            +G  D    L     F+Q+ E          G ++      +VI+G V++ KNPC HPGD
Sbjct: 1535 LGVCDPTNSLPPNTVFVQLEEEDED---DDDGRKYE-----KVIEGLVMVIKNPCTHPGD 1586

Query: 828  IRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWP 887
            +R L+AVD+  L HL + LVF  KGD P+  E SGSDLDGD YF  +D++LI    KS  
Sbjct: 1587 VRYLKAVDNLRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSKSET 1646

Query: 888  P------MEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALD 941
                   +  N  +A     P     +   ++ ++  + LG + N+H+  +D   +GA  
Sbjct: 1647 AYLGDETVSNNDKKANVFNDPF---ALSSMYSTNVERQELGKMYNSHLAISDL--FGANH 1701

Query: 942  ENCILLAELAATAVDFPKTGKIVTMPAH----LKPKLYPDFMGKEAYQS--YKSNKILGR 995
            E  I +++     +D+PKTG   T+P      LK K YP +M +E      Y+S  I+G+
Sbjct: 1702 EFSIQISKECFKEIDYPKTGIHGTIPKEANVWLKTKGYPHYMQRENSTRVYYQSKTIMGK 1761

Query: 996  LYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLE 1055
            +Y    D  D+ + +    D  P +I  D    V +   ++  A      Y  Q++ LL 
Sbjct: 1762 MY----DQIDQLVYIG---DFLP-NISLDKSNLVDDYEIYLNSAKILYSQYKLQVHSLLR 1813

Query: 1056 QYKVNREEELVTGHI---WSMPKYNSRKQGELKERLKHSYSALRKEFRQVF-EKMDSDCE 1111
             Y    EE ++ G +   +   K +   +GE+K            EF + F E+   +C 
Sbjct: 1814 HYSAESEESIMIGFLDQGFISDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENCL 1873

Query: 1112 LLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDY 1166
            L+         E+K SAWY V Y         DL++ D A     L F WIA  +
Sbjct: 1874 LIHR----VNIEKKVSAWYHVAYS--------DLKD-DRA-----LGFYWIARSF 1910


>gi|258569467|ref|XP_002543537.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237903807|gb|EEP78208.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1004

 Score =  288 bits (736), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 195/592 (32%), Positives = 298/592 (50%), Gaps = 67/592 (11%)

Query: 411 VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
           V+V R  +TP+  Y   P +E  NRVLR+Y +  + FLRV F+DE     + + + Y   
Sbjct: 429 VKVNRTQVTPSGIYLYGPNIETKNRVLRQYDNHINHFLRVEFVDE-----HGDRVYYDPQ 483

Query: 471 PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS----- 525
             + +I           ++R + +L  G  + GR+FSFL FS S LR  + WF +     
Sbjct: 484 ASLEEI----------FYQRFKGVLKNGIQIGGRRFSFLGFSHSSLRSQTCWFVAPFITN 533

Query: 526 EDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGY 584
              +  V  I + +G F    + +K AAR+GQ FS T +++++P   V  + PDIKRNG 
Sbjct: 534 TGERFDVESIIQGLGSFDHIYSPSKLAARIGQTFSETQSSIKIPEDAVYFDEPDIKRNGR 593

Query: 585 VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAG--CKGVVACWP----------- 631
           VFSDG+G ++P +  ++ ++  L     P  +QIR+AG        C+P           
Sbjct: 594 VFSDGVGTMSPSIMYKIWKEYALRERVKPTIFQIRFAGNSLPSTFPCYPTANTVFCIILG 653

Query: 632 AKG--------DGIRMSLRESMNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNV 681
           AKG         G ++ LRESM KF++     +EIC S TR  P +LN Q+I +L  L V
Sbjct: 654 AKGMVSLDSRLKGDQLKLRESMIKFKAKGAFNIEICGSGTRALPFYLNAQLIKVLEDLGV 713

Query: 682 PDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGN----TAAIMLSAGFNPQTEPH 737
               F  +Q   + +L  +      A + L      QG        ++     +   +P 
Sbjct: 714 RPSAFIDLQTDEIDRLRSVEKSVIKAGQFLEQTNIAQGVRLPWLIQVIRGLELHHDQDPF 773

Query: 738 LRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSK 797
           LR ++      ++  L+ +ARI VP    L G +DE G L+ G+ F            ++
Sbjct: 774 LRSVIQLAVFLKMRDLKYRARIRVPNAVTLYGIMDESGYLKEGEIFC--------TFLTE 825

Query: 798 HGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDR 854
            G R        +++  +++ ++P LHPGD++   AVD P    L  L++C+VF Q G R
Sbjct: 826 GGVREI------LVRDRIIVTRSPALHPGDVQFANAVDVPATSPLRKLHNCVVFSQHGQR 879

Query: 855 PHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAK 914
              +  SG DLDGDLY + +DE L+P  +++  P +Y   E K L R V + DII+FF  
Sbjct: 880 DLPSMLSGGDLDGDLYNIIYDERLMP--RRTIEPADYPRVEEKLLNRRVVRDDIIDFFVT 937

Query: 915 HMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTM 966
            M  + LG I   H   AD    G LD++C+LLAEL +TAVDF K+G  V++
Sbjct: 938 FMEQDQLGRIATIHQALADQKIEGTLDQDCLLLAELHSTAVDFSKSGIPVSV 989


>gi|170584472|ref|XP_001897023.1| RNA dependent RNA polymerase family protein [Brugia malayi]
 gi|158595558|gb|EDP34101.1| RNA dependent RNA polymerase family protein [Brugia malayi]
          Length = 1542

 Score =  287 bits (735), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 242/824 (29%), Positives = 388/824 (47%), Gaps = 124/824 (15%)

Query: 409  DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYF 468
            + V +R+++ TP +   LPPEV ++NRV+R + +  +  LR  F D+  Q +     +  
Sbjct: 469  NCVLIRKVIATPLRLLLLPPEVMMTNRVIRHFGE--EYALRCVFRDDNGQRLVPKEFT-- 524

Query: 469  IAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE-- 526
                 R  +L    Q   +   V  IL  G  +  R + FLA+S+SQ+RD   + +S+  
Sbjct: 525  -----RGRSLQD--QSLIIPDLVYRILGTGLRIASRHYQFLAWSNSQMRDGGCYMYSDAI 577

Query: 527  -------DGKTSVLDIKKWMGRFT-DKNIAKCAARMGQCFSSTYATVEVPPTE------- 571
                   +   +V DI++WMG FT  K + K  +RMGQCF+    T+++   +       
Sbjct: 578  VNDEVHGEVVCNVEDIRRWMGDFTASKTVPKLMSRMGQCFTQAQPTIKLKKDDWKVEDDI 637

Query: 572  ----VDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVV 627
                V PE  ++    + FSDG+G+I+   A  +A+ L L   P P  YQ+R+ G KGV+
Sbjct: 638  MGGIVHPETGEV----FNFSDGVGRISKKYADRIAKTLGL--YPTPSCYQVRFKGFKGVL 691

Query: 628  ACWPA--KGDGIRMSLRESMNKFQSHHTT---LEICSWTRFQPGFLNRQIITLLSTLNVP 682
               P   + D + +  R+S  KF+    +   +E+  ++   P  LNR +I +L  ++  
Sbjct: 692  CIDPLLDELDQVNIVFRKSQKKFEEDDESAAEVEVVKYSMPSPVRLNRPLIMILDQVSDK 751

Query: 683  D---------EMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQ 733
                          S+ +  L KL  M+ D +VA E L++  +   +   +  S G    
Sbjct: 752  QGRHLHKKVCNRIHSLLELELDKLAAMMFDENVATEELSSRLSLPIDFHQLH-SNGITFT 810

Query: 734  TEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPFL 791
             EP  R +LT I    +     K++IF+P   GR + G +D+ G+L+ GQ F+Q S    
Sbjct: 811  NEPFFRSLLTAIHRYNIKLHLSKSKIFLPCSMGRTMYGVIDDTGLLQYGQVFVQYSSSM- 869

Query: 792  GNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQK 851
                     ++   KK+ V  G V++ KNPC   GD+R+ EAV    L HL D +VFP+ 
Sbjct: 870  ---------QYVSAKKI-VYTGSVMVTKNPCHVAGDVRMFEAVYQDALLHLCDVIVFPRY 919

Query: 852  GDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS---WP---PMEYNAAEAKTLTRPVDQ 905
            G RPH++E +GSDLDGD Y V +D+ L   + +    +P   P EY          P   
Sbjct: 920  GPRPHSDEMAGSDLDGDEYTVIFDKELFFENNERAMFFPNSLPTEYGT--------PATT 971

Query: 906  RDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT 965
             D+I+FF K++  +++G + NAH++           E C  +A   A AVDFPKTG +  
Sbjct: 972  GDMIDFFLKYLSQDSIGRMSNAHLI----------IEVCDDIARKCAVAVDFPKTG-VAA 1020

Query: 966  MP--AHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHY 1023
             P  +H + ++ PD+M      SY+S ++LG LYR+++   D    V      +  D   
Sbjct: 1021 KPLLSHEQCEVMPDYMQNMIKPSYRSKRLLGELYRKARRVEDISEIVQGTKFADYCDPQL 1080

Query: 1024 DTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPK-------- 1075
              +    E  + I ++   +  Y  ++  L+++Y ++ E  +++GH  ++ +        
Sbjct: 1081 CDESLFHEQSELIQESLRLRDEYHSRIQQLMDEYGISDEASVISGHSMTIKRIIEMEKDD 1140

Query: 1076 ---YNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLS-----EDEKNALFERKAS 1127
               YNS K  EL  R    +S  R EF + F   +SD + +      E   N    RKA 
Sbjct: 1141 YSFYNSDKIVEL--RYSRIFSYFRHEFFKEFGG-ESDFQTVDAFGKREMRWNVALIRKAK 1197

Query: 1128 AWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
            AWY VTY   +   S               SF WI  D L  IK
Sbjct: 1198 AWYTVTYTSAFRSSS------------EFRSFPWIVWDILLIIK 1229


>gi|189200837|ref|XP_001936755.1| RNA-dependent RNA polymerase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983854|gb|EDU49342.1| RNA-dependent RNA polymerase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 953

 Score =  287 bits (734), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 231/753 (30%), Positives = 355/753 (47%), Gaps = 118/753 (15%)

Query: 326 EGISFEIMFLVNAVMHKGII---NQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPV-- 380
           +  SF + + V A+M +G I   N  +L    + L +    ++   A++ +   + P   
Sbjct: 30  QAFSFAVRYQVTALMLEGTITPLNIIKLLPYVYHLAKQHGSDLTANAVRQL-GQQIPTPS 88

Query: 381 -------FDACKRLKLVQEWLLKDP-------ELYKGPKQIDDIVEVRRLVITPTKAYCL 426
                  F   K    ++E +L++        EL    K+   +    +  +TPT     
Sbjct: 89  PQEDAKSFTTQKLAHNLRETILENEKRELIARELNVKQKKHHHLALTYKATVTPTGILLR 148

Query: 427 PPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTR 486
            P+ ++SNR+LRKY    + F+RV F DE       + LS F  P          + +  
Sbjct: 149 GPDWDVSNRILRKYGTRTEYFMRVFFADE-------DGLSVFHDP---------RASQGN 192

Query: 487 VFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FSEDGKT-SVLDIKKWMGRF 542
           V++R RS+L  G ++ GR + FL FS + LR   AWF   F  +G      DI   +G F
Sbjct: 193 VYERFRSVLQHGIFVAGRTYQFLGFSHASLRSHQAWFMAPFEMNGTMFRARDIISDLGDF 252

Query: 543 TDKNI-AKCAARMGQCFSSTYATVEVPPTE-VDPELPDIKRNGYVFSDGIGKITPDLAME 600
           +  +  A+C+AR+GQ FS T  +V VP T  V     DI RNG  FSDG G I+ ++  +
Sbjct: 253 SHIHCSARCSARIGQAFSDTIFSVPVPSTAYVTETKADIARNGRTFSDGCGTISLEILRK 312

Query: 601 VAQKLKLDVNPP------PCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHT- 653
           V   L     PP      P   QIR+ G KGV++   +   G ++ +R+SM K+ +  T 
Sbjct: 313 VWNTL-----PPERKAQRPTILQIRFRGAKGVLSLDESLV-GEQLHIRQSMTKYIAKETW 366

Query: 654 -TLEICSWTRFQP--GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEV 710
             LE+C    ++P   FLN Q I +L  L VP   F ++QD  ++ L  +      A   
Sbjct: 367 RDLELCG-AAYKPLQVFLNHQFIKILEDLGVPARNFKAVQDEAVNALKMITEHPLNAASF 425

Query: 711 L----TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRW 766
           L    +   A+      +M   G +   +  L  ++       L  L+ +ARI +  G  
Sbjct: 426 LEYSHSGVYAKVPRLFELMHQIGLSFHADRFLTDIVEVAAMTNLRSLKYRARIPIEQGHL 485

Query: 767 LMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPG 826
           L G +DE   L+ GQ +I   +      + K G    + ++  ++   +VI + P LHPG
Sbjct: 486 LYGIMDETNFLQEGQVYIATQD------YDKSG----KLRRRILVGERIVITRAPALHPG 535

Query: 827 DIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSK 883
           D++++ AVD PE   L  L++C+VF Q+G R   ++ SG DLDGDL+ + +D+ LIP   
Sbjct: 536 DVQLVTAVDVPEHSSLRALHNCVVFSQRGARDLPSQLSGGDLDGDLFHIIYDQRLIP--D 593

Query: 884 KSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDEN 943
            + PP +Y +  AK L RPV+  DI++FF ++M  + LG I N H + AD S  G  D  
Sbjct: 594 FTMPPADYKSNGAKDLGRPVEVNDIVDFFIEYMNMDRLGQISNKHKIRADKST-GTNDPE 652

Query: 944 CILLAELAATAVDFPKTG---KIVTMPAHLKPKLYPDFMG-------------------- 980
           C+LLA+LA+ AVDF K+G    I  +P      + PDFM                     
Sbjct: 653 CLLLAQLASDAVDFSKSGISADISKIPRGFD-HIRPDFMAPGTNLVVNELGAAELEELEP 711

Query: 981 ---------------KEAYQSYKSNKILGRLYR 998
                          K   + YKS+KILG LYR
Sbjct: 712 DDIDDPDGVSVLDADKARSRYYKSDKILGILYR 744


>gi|312081788|ref|XP_003143174.1| hypothetical protein LOAG_07593 [Loa loa]
          Length = 1450

 Score =  286 bits (732), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 255/955 (26%), Positives = 444/955 (46%), Gaps = 178/955 (18%)

Query: 330  FEIMFLVNAVMHKGIINQHQL------SDSFFDLLRGQ---SREVNVAALKHIYSY---- 376
            F + +L+ A++ +G + + Q+       D+F D++  +   + E+ + AL+ + +     
Sbjct: 272  FGLEYLIAALLSRGAVVKDQILIDNKTRDAFIDMILQRFKDNEELTLEALERLINMIDET 331

Query: 377  -----KWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVE 431
                  +  F   +   L Q+ +L+  E+Y+  K+ +    VR++VITPT+   + PE+ 
Sbjct: 332  KEVPCLFTSFQKIRNSLLGQKDVLE--EIYQENKR-EGYQRVRKVVITPTRVLLVVPELL 388

Query: 432  LSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRV 491
            + NRVLR +    +  LR+ F D+                   D T ++F          
Sbjct: 389  MGNRVLRTFDKDGNGALRIQFRDD-------------------DGTPSTFV--------- 420

Query: 492  RSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAKCA 551
                            +L  S+SQ+RD   +F+ +        I++ +G+F   NI K  
Sbjct: 421  ----------------YLGSSNSQMRDNGCYFYDDGKGGQAHKIREQLGKFDRCNIPKMM 464

Query: 552  ARMGQCFS-STYATVEVPPTEVDPELP-----DIKRNGYVFSDGIGKITPDLAMEVAQKL 605
            +RMGQCF+ +   TV +   + +         D  +  Y+FSDG GK++ + A ++A  +
Sbjct: 465  SRMGQCFTQAKRCTVTLKRHKYNKTYDVIGGRDTNQAFYIFSDGAGKVSKEFAEKIALDI 524

Query: 606  KLDVNPPPCAYQIRYAGCKGVVACWPA---------------------KGDGIRMSLRES 644
             L  + P C YQIR+ G KGV++  P+                     K + + +  R S
Sbjct: 525  GLGTSVPSC-YQIRHRGIKGVLSVDPSLDQRKHWAAANNVVDNNKMTNKQNDLAVLFRPS 583

Query: 645  MNKFQS-HHTTLEICSWTRFQPGFLNRQIITLLSTLN------VPDEMFWSMQDSM---L 694
             +KF++     +EI  ++      LNR +I++L  ++      V + +   + D +   +
Sbjct: 584  QDKFKAPRDEYIEIVKYSTPTSVCLNRPMISILDQVSGMQGFSVHERIRKRIHDLLDIQM 643

Query: 695  SKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLR 754
            ++L  ML+  +   E L      + N + + L+ GF    EP  R +L       L  L 
Sbjct: 644  TQLADMLMSEEKCREKLNE-LPWRVNVSRLTLARGFALTQEPFFRSLLRANIKCTLKKLI 702

Query: 755  EKARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIK 812
             K +I VP   GR + G +DE G L+ GQ F+Q +        SK  ++        ++ 
Sbjct: 703  AKVQIQVPPHFGRSMFGVMDETGQLQWGQVFVQCTRSIWLKTPSKSAAKI-------ILV 755

Query: 813  GFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFV 872
            G V++ KNPC+  GD+R+ EAVD PELHHL D +VFPQ G RPH +E +GSDLDGD Y V
Sbjct: 756  GKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDVVVFPQHGPRPHPDEMAGSDLDGDEYSV 815

Query: 873  TWDENLIPPSKKSWPPMEY--NAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVV 930
             WD  L+   + + PP+++  +A++ K +       ++ +FF  ++  +++GTI NA +V
Sbjct: 816  IWDPELM--FEHNEPPLDFTKSASDNKIVEEEQVDLEMRKFFVNYIKQDSIGTISNAFLV 873

Query: 931  HADHSEYGALDENCILLAELAATAVDFPKTGKIVT--------------MPAHLKPKLYP 976
            +AD   YG   E CI +A   + AVDFPKTG   +              +P   + + +P
Sbjct: 874  NADL--YGITSEVCINIARKHSKAVDFPKTGNAPSPLTRQWTQGKNGNILPPE-RAERWP 930

Query: 977  DFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFI 1036
            DFM K    SY S++++G+LYR+ +   D+ +++++ ++   V I  D DLE P    + 
Sbjct: 931  DFMCKNHEPSYISSRLVGQLYRRIR-LLDDALNLTAAME-GSVTIMLDPDLEYPGWEQYQ 988

Query: 1037 ADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIW------------SMPKYNSRKQGEL 1084
              A  Q  SY   +  ++E Y +  E +L +G I              M  YN+     +
Sbjct: 989  NVAKIQLDSYHSHIRSIMENYGIEDEGQLFSGFISVIRNRISDRDTDDMSFYNTNHI--I 1046

Query: 1085 KERLKHSYSALRKEFRQVFEK-MDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSL 1143
            ++++   + A R  F   F   ++S      +++     ER+      +  HP     SL
Sbjct: 1047 EKKVSAVFRAYRHRFFDEFGGFLESTLPDYDDNQSGNAQERR------ICIHP-----SL 1095

Query: 1144 DLQEQDSARSVV------------LLSFAWIANDYLARIKIRCREMANIDTSKPV 1186
            D++ + SA  ++            +LSF W+  D L  +K   R    +  +KP+
Sbjct: 1096 DMKRKASAYYILCYRNASMDTSYRILSFGWLVWDILCHVKQEVR----LGRAKPI 1146


>gi|384499712|gb|EIE90203.1| hypothetical protein RO3G_14914 [Rhizopus delemar RA 99-880]
          Length = 595

 Score =  286 bits (732), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 180/492 (36%), Positives = 270/492 (54%), Gaps = 38/492 (7%)

Query: 692  SMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLS---AGFNPQTEPHLRGMLTCIRAA 748
            +ML +++++L   + A  VL     E G TA +M S   AGF  + +P+++ +L   R  
Sbjct: 3    NMLREIDKILARPEEAIRVLLNNADEAG-TAHMMASIIQAGFLERGDPYIKNLLNLFRVN 61

Query: 749  QLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKL 808
             L  L++KA+I VP G +L+G +DE G L+ G+ +IQV +       + H          
Sbjct: 62   VLKELKKKAKILVPQGAFLLGVMDETGTLDEGEVYIQVWD-------NSHSGTMK----- 109

Query: 809  QVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGD 868
            QVI G   + +NPC HPGD+R++ AVD P L HL + +VFP KG R   +  SG DLDGD
Sbjct: 110  QVITGECAVFRNPCFHPGDVRVVTAVDRPNLSHLVNVVVFPAKGYRDIPSMCSGGDLDGD 169

Query: 869  LYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAH 928
             Y + WD  LIP ++K   PM+Y A++ + +   V  RDI  FF  ++ N+NLG I NAH
Sbjct: 170  DYTIFWDPKLIP-TRKDVAPMDYTASDPRKV-EDVKIRDIQRFFVNYINNDNLGQIANAH 227

Query: 929  VVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYK 988
            +  AD SE GA+D  CILLA+L + AVDFPK+GK  T+   L  + +PDFM K+  +SY 
Sbjct: 228  LATADFSEKGAMDGRCILLAQLHSEAVDFPKSGKPATLSEDLIVRTFPDFMQKKDKESYA 287

Query: 989  SNKILGRLYRQ-SKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYD 1047
            S K+LG ++R   K  Y   +S  +E  +      YDT + +     +I +A   +  Y+
Sbjct: 288  SKKVLGHIFRSIDKSDYKNYMSKLTEEAV------YDTRMHLSGMAYYIGEARTLRRDYN 341

Query: 1048 GQLNGLLEQYKVNREEELVTGHI--WSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEK 1105
              L  L+ Q  V  E E+++G+I  W + K  S+ + E  +    +  + +  +R+ FEK
Sbjct: 342  RDLLALMNQNGVQTEAEIMSGYIIKW-LKKGKSKTRYEQHDSTMKAIKSFKDLWRKEFEK 400

Query: 1106 --MDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIA 1163
              MD D +   +    A  + KA+AWY VTYHP   ++  D  EQ        LSF W+ 
Sbjct: 401  EFMD-DTQKTVDPAHRASMDAKAAAWYYVTYHPS--ERQRDFSEQGG-----FLSFPWVI 452

Query: 1164 NDYLARIKIRCR 1175
            +DY+  I  R +
Sbjct: 453  HDYVCEIAKRNK 464


>gi|346973013|gb|EGY16465.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
          Length = 1310

 Score =  286 bits (732), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 266/899 (29%), Positives = 407/899 (45%), Gaps = 155/899 (17%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVA----------ALKHIYS-- 375
            + F ++FL  A+     ++ H ++DS    +R       +A          A+K +Y   
Sbjct: 326  VPFRLLFLTQALASNNYLHPH-VADSLLFCIRQAFSTARIAQQPHDPVSAEAMKSLYQDI 384

Query: 376  -YKWPVFDACKR--LKLVQEWLLKDPELYKGPKQI-------DDIVEVRRLVITPTKAYC 425
             Y +P  +      + L+   L K+    K             +   V +  +TPT+   
Sbjct: 385  PYPYPGMEPSDLDPVALMAHLLKKEARTRKEAAMTAFKHTSNKNYAWVFKANVTPTRITL 444

Query: 426  LPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKT 485
              P  E  NR+LRK+ D A+ F+RV F DE     N +           DI L++     
Sbjct: 445  HGPAYEPMNRILRKFPDHAEYFMRVQFCDE-----NGD-----------DIFLSAKVSND 488

Query: 486  RVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS----EDGK-TSVLDIKKWMG 540
             ++ R R +L  G  + GR +SFL FS S LR  SAWF +    + G+  S ++I K +G
Sbjct: 489  HIYNRFRRVLQSGIQIAGRVYSFLGFSHSSLRSHSAWFSAPFVDKTGQLQSYVNIIKSLG 548

Query: 541  RFTDKNI-AKCAARMGQCFSSTYATVEVPPTEVDPE-LPDIKRNGYVFSDGIGKITPDLA 598
             F    I AKCAAR+GQ FS T ++V +    +  + +PD+K    VFSDG+G I+ D  
Sbjct: 549  DFEHIRIPAKCAARIGQAFSETTSSVSLVDHGIVCQFIPDVKYGNRVFSDGVGTISRDAL 608

Query: 599  MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLR-ESMNKFQSHHT-TLE 656
              +   L    + P C  QIR+ G KG+++   ++  G  M++R ESM KF S     L 
Sbjct: 609  ETIWPHLPRMESLPTC-LQIRWGGVKGMLSL-DSRLPGRVMNIRQESMLKFPSTDLDNLG 666

Query: 657  IC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDS--DVAFEVLTA 713
            IC + +R     LNRQ+I +L  + V DE F+S+Q   L +L  +  D+    AF  L  
Sbjct: 667  ICGAASRPLRMVLNRQMIKILEDMGVRDEWFFSLQKRELERLRAVTADAWNTGAFLQL-- 724

Query: 714  ACAEQGNTAAIMLSA--------GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGR 765
                QG  +A  LS         G N + +  LR  +  +   +L  L+ KARI VP G 
Sbjct: 725  ----QGIGSAFYLSTFIKTLDKYGINYRRDDFLRCTVEAVVLRELRLLKHKARIPVPQGV 780

Query: 766  WLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQ--VIKGFVVIAKNPCL 823
             L G +DE G L  G+ ++         C+    SR+  +  +   +  G +++ ++P L
Sbjct: 781  TLFGIMDETGFLSEGEVYV---------CYD---SRYNGSLPIDSTLSDGNILVTRSPAL 828

Query: 824  HPGDIRILEA----VDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
            HPGDI+ +      V HP L  L +C+VF Q G+R   ++ SG DLDGDLY + WD    
Sbjct: 829  HPGDIQWVRMRTPPVGHP-LRDLRNCIVFSQHGERDLPSQLSGGDLDGDLYNIIWDRQAR 887

Query: 880  PPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGA 939
            P  K+ + P +Y       L R V + D+  FF   M ++ LG I   H++ AD  E G 
Sbjct: 888  P--KRFFAPADYPRITPTELNRQVTRDDMAGFFVNFMKSDVLGMIATKHLILADQKEEGT 945

Query: 940  LDENCILLAELAATAVDFPKTGKIVTMPA-----HLKPKLYPD----------------- 977
            LD +CI+ AE+ +TAVDF KTG  V M A      ++P LY +                 
Sbjct: 946  LDADCIIFAEMHSTAVDFSKTGIPVDMQAMPKTNRIRPDLYSELTAHSFAPAPPTQYVDR 1005

Query: 978  ------------FMGKE---------AYQSYKSNKILGRLYRQ--SKDAYDEDISVSSEV 1014
                        F G E         A++ Y+S KILGRLYR    K  +D+D+      
Sbjct: 1006 QQIDFVEKPSASFYGGEDEEEDAFRPAHKFYRSGKILGRLYRNIDEKRMWDQDVRRPVTT 1065

Query: 1015 DINPVDIHYDTDLEVPES-----------VDFIADAW---NQKCSYDGQLNGLLE----Q 1056
            +   V   +   +E   S             + A+AW   N +   D   N + E     
Sbjct: 1066 EGPTVWEQFIGMMEKKLSEHAPGVGRISWEHWKAEAWALRNIRRYEDAVHNAMYEYSDSH 1125

Query: 1057 YKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSY----SALRKEFRQVFEKMDSDCE 1111
             ++  E E+  G I+S     +R+Q +  ++LK ++      L    RQ   + + D +
Sbjct: 1126 LRMLTEVEVFCGFIFSKTGAQTRRQADNSKKLKETFERVSETLVANIRQRTRETEEDAQ 1184


>gi|336467963|gb|EGO56126.1| hypothetical protein NEUTE1DRAFT_64449 [Neurospora tetrasperma FGSC
            2508]
 gi|350289794|gb|EGZ71019.1| RdRP-domain-containing protein [Neurospora tetrasperma FGSC 2509]
          Length = 1350

 Score =  286 bits (731), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 227/766 (29%), Positives = 362/766 (47%), Gaps = 93/766 (12%)

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
            + ++ R ++TPT+     PE+E  NR+LRK+ +  D FLRV F +E  Q           
Sbjct: 409  LTKIYRALVTPTRIELHGPELEAKNRILRKFPEHQDHFLRVQFGEEDGQ----------- 457

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FSE 526
                 D+  NS      +++R + +L+ G  + GR + FL FS S LR  S W    F  
Sbjct: 458  -----DLFFNSAVSMDAIYQRFKDVLTNGISVGGRVYRFLGFSHSSLRAHSLWLAAPFIY 512

Query: 527  DGKTSVLD-IKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDP-ELPDIKRNG 583
            +G+  + + I + +G F + K+ A+ AAR+GQ FS T  +V +    +D     DIKRN 
Sbjct: 513  NGRLQLANNIIEGLGDFGNIKSPARRAARIGQAFSETPYSVSLDTHGIDVIRQRDIKRNE 572

Query: 584  YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRE 643
             VFSDG+G I+   A+EV  +   +    P   Q+R+AG KG++A   A+  G ++ +R+
Sbjct: 573  RVFSDGVGIISQG-ALEVIHREIPESKGYPNCLQVRWAGAKGMLAL-DARLPGRQICIRD 630

Query: 644  SMNKFQSH-HTTLEICSW-TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
            SM KF+S     LEIC   ++  P  LNRQ+I +L  +  P + F  +Q+  L +L  + 
Sbjct: 631  SMEKFRSRDEEHLEICDMASKPIPLMLNRQMIKILEDMGAPAKWFMKLQEKELQRLRAIT 690

Query: 702  VDSDVAFEVLTAACAEQGNTAAIMLS----AGFNPQTEPHLRGMLTCIRAAQLWGLREKA 757
             +       L   C       +  L        + + +  LRG++  +   +L  L+ KA
Sbjct: 691  DNVQNVATFLKLQCVGDSVHLSQFLKDLDKMNIDYRRDQFLRGIVEAVVLRELRLLKHKA 750

Query: 758  RIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVI 817
            RI VP G  L G +DE G+L  G+ ++          F     RF    K     G VV+
Sbjct: 751  RIPVPYGVTLFGVMDETGLLREGEVYV---------TFETVDGRF----KGPPTAGPVVV 797

Query: 818  AKNPCLHPGDIRI----LEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVT 873
             ++P LHPGDI+I    +    HP L  L +C+VF Q G+R   ++ SG DLDGD + V 
Sbjct: 798  TRSPALHPGDIQIAYNVIPPAGHP-LRELKNCIVFSQNGERDLPSQLSGGDLDGDTFNVI 856

Query: 874  WDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHAD 933
            WD+ ++  + +++P  +Y   E   L R V+ +D+ +FF + M  ++LG I   H++ AD
Sbjct: 857  WDQRIVS-TLRTFPAADYPRVEPLKLNREVESKDMADFFVEFMKADHLGVIAVRHMILAD 915

Query: 934  HSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY-PDFM------------- 979
              + G LD +C+ LA L + AVDF K+G  V +    +P +Y PDF+             
Sbjct: 916  ERDEGTLDADCLKLAALHSKAVDFSKSGIHVDITELPRPPMYRPDFLVNGPDIKIHDKST 975

Query: 980  ----------------GKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHY 1023
                                Y+ YKS KILG L+R   +      ++  EV    V    
Sbjct: 976  IDMEEQYLKQDDDDGDDTPRYKYYKSEKILGHLFRAVDEKKIWTKNIKLEVPSGGVPFWK 1035

Query: 1024 DTDLEVPESVDFIADA-WNQKC--------SY-DGQLNGLLE----QYKVNREEELVTGH 1069
            + +  + + +  I    W  +         SY DG  + ++E      +  +E E+V G 
Sbjct: 1036 EVESSLLKRIRGIGQVRWQHRLDEARRICESYEDGIRDSMVEFADSPTQPLKELEVVMGF 1095

Query: 1070 IWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSE 1115
            I +     SR+Q +   +L  +++ + K    V        E  SE
Sbjct: 1096 ILNKKGIQSRRQRDKSSKLSDAFARITKMVTNVMRPSTPPEEATSE 1141


>gi|358369173|dbj|GAA85788.1| RNA-directed RNA polymerase (Sad-1) [Aspergillus kawachii IFO 4308]
          Length = 745

 Score =  285 bits (730), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 205/605 (33%), Positives = 306/605 (50%), Gaps = 75/605 (12%)

Query: 604  KLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRF 663
            K+K     PP A+Q R  GCKG++A   +      + +RES NKF + H  LEI  W+++
Sbjct: 5    KIKTPTGEPPSAFQFRLGGCKGMLAV-SSDAQPQEIHIRESQNKFPTVHNGLEIIRWSQY 63

Query: 664  QPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAA 723
                LNRQ+I ++STL +PDE+F +   SML  L++ +     A EVL         T  
Sbjct: 64   SMATLNRQLILVMSTLGIPDEVFHAKLKSMLRALDEAMESDSRAIEVLKKYVDPNQTTLT 123

Query: 724  I--MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG-- 779
            +  M+S GF    EP    +L   R   +  L+EKA+I +  G  L+G +DE G+L+G  
Sbjct: 124  VSQMVSDGFRRSKEPFFTSILALWRTWHIKYLKEKAKIVIDNGTNLLGVMDETGILKGYF 183

Query: 780  -----------GQCFIQVSEPFLG---NCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHP 825
                        Q    + E FL       S+ G+++      +VI+G  ++A+NP LHP
Sbjct: 184  YDKIPKEDASLEQKLAALPEIFLQVPRTSGSEGGAQY------EVIEGLCILARNPSLHP 237

Query: 826  GDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS 885
            GDIR++ AV+ PELH L D +V PQ GDR   +  SG DLDGD Y V WD++LI    K 
Sbjct: 238  GDIRVVRAVNVPELHSLRDVVVLPQTGDRDIASMCSGGDLDGDDYLVIWDQDLI---HKD 294

Query: 886  W--PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDEN 943
            W   PM Y + +A+ L   V   ++  FF  +M N++L TI +AHV  AD  E G  +E 
Sbjct: 295  WFLDPMRYTSNKAQDLDHDVTVDEVTSFFVMYMKNDSLPTIAHAHVAWADQLEDGVNEEK 354

Query: 944  CILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAY--QSYKSNKILGRLYRQSK 1001
            CI LA+L + AVD+ KTG+   M  +L+P+ +P FM K     Q Y S KILG+LY    
Sbjct: 355  CIRLAQLHSDAVDYNKTGRPAIMTRNLQPRRWPHFMEKPKPKDQIYCSRKILGQLY---- 410

Query: 1002 DAYDEDISVSSEVDINP-VDIHYDTDL---EVPESVDFIADAWNQKCSYDGQLNGLLEQY 1057
            DA +        VD  P +++ +D  +    +  S D    A N K  +D  +  ++ Q+
Sbjct: 411  DAVE-------RVDFVPSLEMPFDERILNCSIEVSEDLYTFAKNLKNEFDTAMRRIMAQH 463

Query: 1058 KVNREEELVTGHIWS---MPKYNSRKQGELKERLKHSYSALRKEFR-QVFEKMDSDC-EL 1112
            ++  E E     +WS   +   +  K  +  E +    +A R+ FR Q + K+D    EL
Sbjct: 464  EIKTEFE-----VWSTFILNHSHMSKDYKFHEEIGAISAAHRETFRKQCYNKVDGRTFEL 518

Query: 1113 LSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSA-------RSVVLLSFAWIAND 1165
            L+           A A Y+VT+  E + ++L    ++S          + L+SF WI   
Sbjct: 519  LAP---------LAVAMYRVTH--EEMTQALKKHRENSPPHETPKINQLPLISFPWILPH 567

Query: 1166 YLARI 1170
             L R+
Sbjct: 568  ILGRV 572


>gi|85110327|ref|XP_963405.1| hypothetical protein NCU08435 [Neurospora crassa OR74A]
 gi|28881256|emb|CAD70515.1| related to RNA-directed RNA polymerase [Neurospora crassa]
 gi|28925084|gb|EAA34169.1| predicted protein [Neurospora crassa OR74A]
          Length = 1351

 Score =  285 bits (729), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 226/768 (29%), Positives = 362/768 (47%), Gaps = 97/768 (12%)

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
            + ++ R ++TPT+     PE+E  NR+LRK+ +  D FLRV F +E  Q           
Sbjct: 411  LTKIYRALVTPTRIELHGPELEAKNRILRKFPEHQDHFLRVQFAEEDGQ----------- 459

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FSE 526
                 D+  NS      +++R + +L+ G  + GR + FL FS S LR  S W    F  
Sbjct: 460  -----DLFFNSAVSMDAIYQRFKDVLTNGISVGGRVYRFLGFSHSSLRAHSLWLAAPFIY 514

Query: 527  DGKTSVL-DIKKWMGRFTDKNI---AKCAARMGQCFSSTYATVEVPPTEVDP-ELPDIKR 581
            DGK  +  +I + +G F  +NI   A+ AAR+GQ FS T  +V +    +D     D+KR
Sbjct: 515  DGKLQLASNIIEDLGDF--RNIMSPARRAARIGQAFSETPYSVSLYDHGIDVIRQRDVKR 572

Query: 582  NGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSL 641
            N  VFSDG+G I+   A+EV  +   +    P   Q+R+AG KG++A   A+  G ++ +
Sbjct: 573  NERVFSDGVGIISQG-ALEVIHREIPESKGYPNCLQVRWAGAKGMLAL-DARLTGRQICI 630

Query: 642  RESMNKFQSH-HTTLEICSW-TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQ 699
            R+SM KF+S     LEIC   ++  P  LNRQ+I +L  +  P + F  +Q+  L +L  
Sbjct: 631  RDSMEKFRSRDEEHLEICDMASKPIPLMLNRQMIKILEDMRAPAQWFLELQEKELQRLRA 690

Query: 700  MLVDSDVAFEVLTAACAEQGNTAAIMLS----AGFNPQTEPHLRGMLTCIRAAQLWGLRE 755
            +  +       L   C       +  L        + + +  LRG++  +   +L  L+ 
Sbjct: 691  ITDNVQNVATFLKLQCVGDSVHLSQFLKDLDKMNIDYRRDQFLRGIVEAVVLRELRLLKH 750

Query: 756  KARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFV 815
            KARI VP G  L G +DE G+L  G+ ++          F     RF +        G V
Sbjct: 751  KARIPVPYGVTLFGVMDETGLLREGEVYV---------TFETVDGRFKDPP----TAGPV 797

Query: 816  VIAKNPCLHPGDIRI----LEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYF 871
            V+ ++P LHPGDI+I    +    HP L  L +C+VF Q G+R   ++ SG DLDGD + 
Sbjct: 798  VVTRSPALHPGDIQIAHNAIPPAGHP-LRELKNCIVFSQNGERDLPSQLSGGDLDGDTFN 856

Query: 872  VTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVH 931
            V WD++++  + +++   +Y   E   L R V+ +D+ +FF + M  ++LG I   H++ 
Sbjct: 857  VIWDQSIVA-TLRTFAAADYPRVEPLKLNREVESKDMADFFVEFMKADHLGVIAVRHMIL 915

Query: 932  ADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY-PDFM----------- 979
            AD    G LD +C+ LA L + AVDF K+G  V +    +P +Y PDF+           
Sbjct: 916  ADERNEGTLDADCLKLAALHSKAVDFSKSGIHVDITELPRPPMYRPDFLVNGPDIKIHDK 975

Query: 980  ------------------GKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDI 1021
                                  Y+ YKS+KILGRL+R   +      ++  EV    V  
Sbjct: 976  STIDMEEQYLRQDDDDGDDTPRYKYYKSDKILGRLFRAVDEKKIWTKNIKLEVPSGGVPF 1035

Query: 1022 HYDTDLEVPESVDFIADA-WNQKC--------SYDGQLNGLLEQYKVN-----REEELVT 1067
              + +  + + V  I    W  +         SY+  +   + ++  +     +E E+V 
Sbjct: 1036 WKEVESSLLKRVRGIGQVQWQHRLDEARRICESYEDGIKDAMVEFADSPTQPLKELEVVM 1095

Query: 1068 GHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSE 1115
            G I +     SR+Q +   +L  +++ + K    V        E  SE
Sbjct: 1096 GFILNKKGIQSRRQRDKSSKLSDAFARITKMVTNVLRPSTPPEEATSE 1143


>gi|449467491|ref|XP_004151456.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
          Length = 401

 Score =  285 bits (729), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 175/424 (41%), Positives = 235/424 (55%), Gaps = 31/424 (7%)

Query: 767  LMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPG 826
            +MGCLDE   LE GQ F+  S P           R +E     V+KG +V+AKNPCLHPG
Sbjct: 1    MMGCLDETQTLEYGQVFVHCSIP----------GRSSEGN--FVVKGKIVVAKNPCLHPG 48

Query: 827  DIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW 886
            D+R+L+AVD   LHH+ DC+VFPQKG RPH NE SGSDLDGDLYFV WD  L     K  
Sbjct: 49   DVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELT--CIKQV 106

Query: 887  PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCIL 946
             PM Y  A    L   V   ++ E+FA +MVN+ LG I NAH V AD +   A+   CI 
Sbjct: 107  KPMSYKPAPTIQLDHDVTIEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSVECIK 166

Query: 947  LAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDE 1006
            LA+L + AVDFPKTG    +P +L+   YPDFM K    +Y SN +LG+L+R  KD    
Sbjct: 167  LAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDV-SS 225

Query: 1007 DISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELV 1066
            D+S             YD D+EV     ++ +A++ K  YD +L  L++ Y +  E ELV
Sbjct: 226  DVSAFEIFTREVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELV 285

Query: 1067 TGHIWSMPK-YNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERK 1125
            +G+I  M K ++ RK     E++  +  +LRKE R  F + +S        ++ A    +
Sbjct: 286  SGNILKMAKSFDKRKD---LEQIAFAMKSLRKEVRFWFNENESKSTYDDIQDEYA----R 338

Query: 1126 ASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKP 1185
            ASAWY VTYHP++     +  ++D       LSF W   D L +IK   RE  ++  S P
Sbjct: 339  ASAWYCVTYHPDYWGCYNEGTKRDH-----FLSFPWCVADKLIQIK---REKMSMRNSSP 390

Query: 1186 VNYL 1189
             + L
Sbjct: 391  KSSL 394


>gi|320593975|gb|EFX06378.1| RNA-dependent RNA polymerase [Grosmannia clavigera kw1407]
          Length = 1259

 Score =  285 bits (728), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 247/831 (29%), Positives = 385/831 (46%), Gaps = 131/831 (15%)

Query: 253  IRTTDFTPSGA--IGRCNSYRISISS-RHRGKLSKVITYLGERRVQVDSLSRPITIREEP 309
            +R T  +P  A   G C  YRI++   + + K+  + T L   R  V +   P       
Sbjct: 224  VRQTQLSPKHAEVGGTCLIYRINVDPVQLQRKMDYLNTMLTVTRYDVSNRLAP------- 276

Query: 310  DFEVPMSDPFFCIHYE-------EGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQ- 361
                P++D    +H +         + F I+F + A+     +    ++D   +L+  Q 
Sbjct: 277  ----PIADSLKKLHAKLASMLTSSKLPFSILFQLQALAWNAFLYPDTVADLASELVVLQK 332

Query: 362  SREVNVAALKHIYS-YKWPVFDACKRLK-----LVQEWLLKDPELYKG-------PKQID 408
            +  V+V A+K +++   WP  +     +     LV   L K+ E+  G           +
Sbjct: 333  TAPVSVDAMKMLFTDIGWPTPNDADPSQFEVPALVAHLLKKEREIRSGYAIREGLLSPSE 392

Query: 409  DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYF 468
            ++  + R+ +TPT+     PE E  NRVLRK+ +  D F+RV F DE   ++        
Sbjct: 393  NLAPICRVSVTPTRILLYGPEFEKKNRVLRKFPNQHDCFIRVQFCDENGDSLR------- 445

Query: 469  IAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FS 525
                     L   +   +V+KR   I+  G  + GR + FL +S S LR  S WF   F 
Sbjct: 446  --------LLGRRTSYEKVYKRFIDIMKNGIQIVGRTYKFLGWSHSSLRAHSMWFTAPFI 497

Query: 526  ED-GKTSV-LDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPD---I 579
            +D G+    L I   +G F   ++ AKCAAR+GQ FS T   V +   ++   L D    
Sbjct: 498  DDTGRLQTHLTIISTLGDFAGIRSPAKCAARIGQAFSETPYAVPLSEHKISVMLVDDVKS 557

Query: 580  KRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRM 639
            K   +VFSDG+G I+ D A  V + +      P C +Q+RYAG KG+++    +  G ++
Sbjct: 558  KDGKHVFSDGVGTISLDAAAAVWKYVPKSKRNPTC-FQVRYAGAKGMLSL-DTRLQGSQI 615

Query: 640  SLRESMNKFQSHHT-TLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN 698
             LR SM KF+S+ T  LEIC   +  P +LNRQ+I +L  ++VP + F  +Q+  L +L 
Sbjct: 616  LLRPSMIKFESNETENLEICDVAKAMPLYLNRQMIKILEDMSVPRKWFLRLQNDALQQLR 675

Query: 699  QMLVDS-DVAF-----EVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWG 752
             +   + ++A+      V T+    +       L   +  +TEP LR     +   +L  
Sbjct: 676  LIASSAYNMAYFLKHQSVGTSIKLHKLLLLTDKLGLDY--RTEPFLRRAAEAVVLRELRL 733

Query: 753  LREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHG---SRFAETKKLQ 809
            L+ KARI VP G  L G +DE   L  GQ ++           +K G    RF +     
Sbjct: 734  LKHKARIPVPFGITLFGVMDETEFLAKGQVYVTFE--------TKQGLKPQRFEQPPGHA 785

Query: 810  VIKGFVVIAKNPCLHPGDIR----ILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDL 865
            V   ++++ ++P LHPGDI+    ++    HP L  L +C+VF  KG R   ++ SG DL
Sbjct: 786  V---YLLVTRSPALHPGDIQWACNMIPPEGHP-LRELSNCVVFSAKGARDLPSQLSGGDL 841

Query: 866  DGDLYFVTWDENLIPPSK-KSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTI 924
            DGD++ + WD  +  P + K++   EY     + + R V   DI +FF   M  ++LGTI
Sbjct: 842  DGDIFNLIWDREVCRPVELKTYRAAEYARVPPQNIWREVQTEDIAQFFIDFMKTDHLGTI 901

Query: 925  CNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK-----PKLYPDFM 979
               H++ AD  E G LD +CI +AEL +TAVDF KTG    +PA L          PDF+
Sbjct: 902  ATRHMILADQKEMGTLDSDCIAMAELHSTAVDFSKTG----IPADLNELRRASPFRPDFL 957

Query: 980  G--------------------------------KEAYQSYKSNKILGRLYR 998
                                               A++ Y+S K+LG LYR
Sbjct: 958  APGSLVYVHNKADIELEKYVANNERDVHAEALDGPAHKYYRSEKVLGVLYR 1008


>gi|242809058|ref|XP_002485290.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218715915|gb|EED15337.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1207

 Score =  285 bits (728), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 192/588 (32%), Positives = 295/588 (50%), Gaps = 52/588 (8%)

Query: 411 VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
           +E+ RL +TPT  Y   P VE  NRVLRKY+  +D F+RV F++E               
Sbjct: 413 MEIHRLSVTPTGIYLDGPNVEAENRVLRKYRHQSDYFIRVRFIEESGD------------ 460

Query: 471 PIVRDITLNSFSQKTRVFK-RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE--D 527
           P++ DI+    S   R+FK R   +L  G  +  R + FL FS S LR  S WF +E  D
Sbjct: 461 PMMYDIS----SNLDRIFKDRFGEVLRDGVIIADRHYRFLGFSHSSLRSRSCWFMAEFHD 516

Query: 528 GKTSVLDIKKWMGRFTD----KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG 583
            +  ++ +   + +  D    ++ AK AAR+GQ FS T  ++ V    V   + D++RNG
Sbjct: 517 SEGQLITVNSLISKLGDFSHIRSPAKFAARLGQTFSDTLTSISVDRDMVK-RIDDVERNG 575

Query: 584 YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRE 643
            VFSDG G I+ ++   + +    +    P  +Q+R +G KG+++  P +  G  + LR+
Sbjct: 576 RVFSDGCGTISKEVLWRIYRDYPRNAAVRPTVFQVRISGAKGMLSLDP-RLKGPTICLRD 634

Query: 644 SMNKFQSH-HTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
           SM KF++     +EIC S     P +LN  +I +L  L V  ++F  +Q   +  L   +
Sbjct: 635 SMIKFRAEADHNIEICGSGIHSLPCYLNAPLIKILEDLGVARDLFLELQREEVQNLRLAI 694

Query: 702 VDSDVAFEVLTAACAEQGNTAA----IMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKA 757
                A   L  A   +    +    ++ S G N   +  L+  +  +   +L  L+ +A
Sbjct: 695 RSPRQAASFLDQAHITKSTRLSWLITVLQSMGLNYNQDKFLKRAVELVILMKLRDLKYRA 754

Query: 758 RIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV-IKGFVV 816
           RI VP    L G +DE G L+ G+ F+    P L             TK+  + ++  V+
Sbjct: 755 RILVPEAVTLYGIMDETGYLQEGEIFV----PILNEV----------TKRRNILVQNKVL 800

Query: 817 IAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVT 873
           I ++P  HPGD++++ AV+ PE   L  L++C+VF QKG+R   ++ SG DLDGD++ + 
Sbjct: 801 ITRSPAFHPGDVQMVNAVNVPEASPLRKLHNCVVFSQKGERDLPSQLSGGDLDGDIFNII 860

Query: 874 WDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHAD 933
           +D       ++   P +Y  A    L RPV   DI +FF + M  + LG I   H + AD
Sbjct: 861 YDPRF--RLQRLARPADYPRAPGTVLDRPVQMEDIQKFFIEFMQQDQLGRIATTHKILAD 918

Query: 934 HSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK-PKLYPDFMG 980
               G  D NC+ LA L +TAVDF KTG  V +    K P   PDFM 
Sbjct: 919 QQAAGTFDPNCLTLAHLHSTAVDFSKTGTPVDIKQIPKYPPYRPDFMA 966


>gi|406862357|gb|EKD15408.1| RNA-dependent RNA polymerase [Marssonina brunnea f. sp.
            'multigermtubi' MB_m1]
          Length = 1193

 Score =  285 bits (728), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 236/752 (31%), Positives = 361/752 (48%), Gaps = 119/752 (15%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            + R+ ITP+  Y   PE E  NRVLR+Y    D F+RV+F DE  + +  N       P 
Sbjct: 418  IHRVTITPSGFYLGGPEYEPMNRVLRQYPKHHDSFIRVSFADEDGEPIRFN-------PK 470

Query: 473  VRDITLNSFSQKTRVFK-RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTS 531
            V +          ++F+ R  + LS GF++ GRKF FL FS S LR  S WF S      
Sbjct: 471  VSN---------EKIFQDRFGTFLSTGFHVAGRKFDFLGFSHSSLRAQSCWFMSPFAHNG 521

Query: 532  VLD----IKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVF 586
             L     + + +G FT  +  AKCAAR+GQ FS T   V + P  V   LPD++R   VF
Sbjct: 522  SLMYDRVLIQQLGDFTKIRCPAKCAARIGQAFSETPIAVPLEPGLVQ-LLPDVERGSRVF 580

Query: 587  SDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPA-KGDGIRMSLRESM 645
            SDG GKI+  +   +   L       P  +QIRY G KG+++     +GD + M  R SM
Sbjct: 581  SDGCGKISRSIMHRIWAVLPDMRKHQPTCFQIRYQGAKGMLSLDDTLEGDQVLM--RPSM 638

Query: 646  NKFQ-SHHTTLEICSWT-RFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVD 703
             KF  S    LE+C+ + +  P +LNRQ+I ++  + VPD+ F  +Q   + +L +    
Sbjct: 639  IKFDGSPSFDLELCNASYKSLPMYLNRQLIKIMEDIGVPDQWFLDLQSQEIERLRKATTS 698

Query: 704  SDVAFEVLTA-ACAEQGNTAAIM-----LSAGFNPQTEPHLRGMLTCIRAAQLWGLREKA 757
            +  A + L++ +  ++ + + ++     +S  F  +T+  L  +L      ++  L+ +A
Sbjct: 699  ASNAAKFLSSHSIGDRVHLSWLIRKLAQMSIEF--RTDRFLCDVLELSVMLEVKTLKHRA 756

Query: 758  RIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVI 817
            R  VP G  L G +DE G+LE G+ +            S+ G      K++ VI+  V++
Sbjct: 757  RYPVPEGLTLYGIMDETGILEEGEIYCTYQ--------SQKG------KRMVVIQDRVLV 802

Query: 818  AKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTW 874
             ++P LHPGD++ ++AV+ P    L  L +C+ F QKGDR   +  SG DLDGDLY + W
Sbjct: 803  TRSPALHPGDVQPVKAVNVPRDSPLSKLRNCICFSQKGDRDLPSMLSGGDLDGDLYNIIW 862

Query: 875  DENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADH 934
            D       K    P +Y   +   + R V + D+ +FF + M  + LG I  +H + AD 
Sbjct: 863  DPGCQIRFKSF--PADYPRQDPIDIGRQVSREDMTKFFVQFMETDQLGRIAMSHQILADQ 920

Query: 935  SEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK-PKLYPDFMG---------KE-- 982
             + G  DE+C +LAE+ +TAVDF KTG  V M    K   + PDFM          KE  
Sbjct: 921  KDMGTFDEDCRILAEMHSTAVDFSKTGVPVDMKKMPKFTPIRPDFMSMGNHVRMEKKEGL 980

Query: 983  --------------------AYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIH 1022
                                AY+ Y+S++ILG+LYR    A DE   V SE     +  +
Sbjct: 981  LLEATTLSTQDDNNDDDDFPAYRYYESDRILGKLYR----AIDEH-EVFSE-----IKKY 1030

Query: 1023 YDTDLEVPESVDFIADAWNQKC-----------------SYDGQLNGLLEQYKVN----- 1060
                 + P  +D +    ++KC                  Y+  L  ++  Y  +     
Sbjct: 1031 RMLSRKTPSVLDRVWVHVHKKCWNLQWAQHVLWAQEIREMYEDNLRNIMSSYSEHPSRPI 1090

Query: 1061 REEELVTGHIWSMPKYNSRKQGELKERLKHSY 1092
             E E   G+I S+    S+KQ +L   +K ++
Sbjct: 1091 SELEAFIGNILSVTGTQSKKQRDLSVTMKEAF 1122


>gi|367053924|ref|XP_003657340.1| hypothetical protein THITE_2147717 [Thielavia terrestris NRRL 8126]
 gi|347004606|gb|AEO71004.1| hypothetical protein THITE_2147717 [Thielavia terrestris NRRL 8126]
          Length = 1241

 Score =  285 bits (728), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 233/758 (30%), Positives = 361/758 (47%), Gaps = 111/758 (14%)

Query: 415  RLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVR 474
            R  +TPT+     PE+E  NRVLRK+ D +  F+R  F DE  Q                
Sbjct: 438  RATVTPTRITLHGPELEPMNRVLRKFSDHS-YFIRAQFCDENGQ---------------- 480

Query: 475  DITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FSEDGKTS 531
            D+  N+      VF R +S+L+ G  + GR +  L FS S LR  SAW    F  +G+  
Sbjct: 481  DLFFNAKVSLDAVFDRFKSVLTDGIQVAGRVYKLLGFSHSSLRAHSAWLSAPFIHEGRVQ 540

Query: 532  VLD-IKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDP-ELPDIKRNGYVFSD 588
            + D I   +G F   ++ A+ AAR+GQ FS T   V++    +   E+PD++RNG VFSD
Sbjct: 541  IPDLIITGLGDFNRIQSPARRAARIGQAFSETPYAVDLDENMIQVLEVPDVERNGRVFSD 600

Query: 589  GIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKF 648
            G+G I+   A  V   +      P C +QIR+AG KG+++  P + +G ++ +R SM KF
Sbjct: 601  GVGTISAGAADAVYNVIPKSKGYPTC-FQIRWAGAKGMLSLDP-RLEGNKICIRPSMVKF 658

Query: 649  QSHHTTLEICSW-TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVD-SDV 706
            +S+   LEIC   +R  P  LN Q+I +L  +  PD+ F  +Q+  L +L  +     + 
Sbjct: 659  ESNDRQLEICDMASRPIPMVLNHQLIKILEDMGAPDKWFLELQNRELQRLRAVTATVCNT 718

Query: 707  AFEVLTAACAEQGNTAAIML---SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA 763
            A  V      +      ++L   + G +   +  LR  +  I   +L  L+ KARI VP 
Sbjct: 719  ASFVRAKKIGQSIQLHKLLLQTEAMGLDYWQDDFLRTAVEAIVLNELRLLKHKARIPVPK 778

Query: 764  GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVI-KGFVVIAKNPC 822
            G  L G +DE G L+ G+ ++                  AE +  Q    G V++A++P 
Sbjct: 779  GITLFGIMDETGFLDEGEVYVTYD---------------AEDRYCQPPGPGPVIVARSPA 823

Query: 823  LHPGDIRILEAVDHPELHHLY---DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
            LHPGDI++      P+ H L    +CL+F   GDR   ++ SG DLDGD + V WD  ++
Sbjct: 824  LHPGDIQVAYNRIPPDGHPLIQQRNCLIFSSWGDRDLPSQLSGGDLDGDQFHVIWDPQVV 883

Query: 880  PPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGA 939
              S  ++ P +Y+      L RPV   DI  FF   M  ++LG I   H + AD  E G 
Sbjct: 884  A-SVITFEPAKYDRVSPLELDRPVVSADIAAFFVDFMRTDHLGVIATRHKILADQREGGT 942

Query: 940  LDENCILLAELAATAVDFPKTGKIV---TMPAHLKPKLYPDFMGK--------------- 981
            LD++C+ LAEL + AVDF KTG+ V    +P  LK +  PDF+ +               
Sbjct: 943  LDQDCVRLAELHSRAVDFSKTGRAVERWELPQSLKWR--PDFLSRGPEIKIHDISAIELD 1000

Query: 982  ------------------EAYQSYKSNKILGRLYR--QSKDAYDEDISVSSEVDINPVDI 1021
                                ++ Y+S KILG+LYR    +  + EDI ++  +       
Sbjct: 1001 QYAASRGDEDVDDVNDEGPQHRYYRSEKILGKLYRAVDERKIWAEDIRMA--ITSRGSSS 1058

Query: 1022 HYDTDLEV-PESVDFI---------ADAWNQKCSYDGQLNGLL-----EQYKVNREEELV 1066
             +D  L V  E V  I         A+A   + +Y+  ++G++       ++  RE E+ 
Sbjct: 1059 FWDQFLAVIQERVRAIGPVEWQRRSAEAQRIRHAYEDAVHGVMIDCAEHPHQPLREFEVF 1118

Query: 1067 TGHIWSMPKYNSRKQGE----LKERLKHSYSALRKEFR 1100
             G I    +  +R+Q +    +K+  ++  S + +E R
Sbjct: 1119 IGFILHKTEGQARRQRDRSVKIKDEFEYITSWITREMR 1156


>gi|452004258|gb|EMD96714.1| hypothetical protein COCHEDRAFT_106396 [Cochliobolus heterostrophus
           C5]
          Length = 931

 Score =  284 bits (726), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 215/679 (31%), Positives = 329/679 (48%), Gaps = 109/679 (16%)

Query: 384 CKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDL 443
           CK ++L         +L    K+   +    +  +TPT      P+ ++SNRVLRKY   
Sbjct: 112 CKHMELASR------DLNGKQKKHHHLALTYKATVTPTGILLRGPDWDVSNRVLRKYSTR 165

Query: 444 ADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCG 503
            + F+RV F DE       + LS F          +S + + +V++R R++L  G  + G
Sbjct: 166 TEYFMRVFFADE-------DGLSVF---------HDSRASQNQVYERFRNVLQNGISVAG 209

Query: 504 RKFSFLAFSSSQLRDCSAWF---FSEDGK-TSVLDIKKWMGRFTDKNI-AKCAARMGQCF 558
           R F FL FS + LR+  AWF   F  DG      ++ + +G F+  +  AKCAAR+GQ F
Sbjct: 210 RTFQFLGFSHASLRNHQAWFMAPFEMDGSLVRARNVIQDLGDFSHIHCSAKCAARIGQAF 269

Query: 559 SSTYATVEVPPTEVDPELPD-IKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPP----- 612
           S T  +V VP T    E+ D ++RN   FSDG G I+ +L   V + L     PP     
Sbjct: 270 SDTIFSVPVPETAYVTEVKDDVERNSRTFSDGCGTISLELLRTVWRAL-----PPERRQQ 324

Query: 613 -PCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHT--TLEICSWTRFQP--GF 667
            P   QIRY G KGV++   +  D  ++ +R+SM K+ +  T   LE+C    ++P   F
Sbjct: 325 RPTVLQIRYRGAKGVLSLDASLSDQ-QLHVRKSMTKYIAKETWRDLELCG-AAYKPLSVF 382

Query: 668 LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVD--SDVAFEVLTAAC--AEQGNTAA 723
           LN Q I +L  L VP E F  +QD  ++ L  +     +  +F   + +C  A+      
Sbjct: 383 LNHQFIKILEDLGVPAENFLHVQDEAVNTLKLITEHPLNAASFLAYSHSCIFAKVPQLFE 442

Query: 724 IMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCF 783
           +M   G     +  L  ++     + L  L+ +ARI +  G  L G +DE   L+ G+ +
Sbjct: 443 MMHRIGLPFHADRFLTDIVEVAAMSSLRSLKYRARIPIEKGYLLYGVMDETNTLKYGEVY 502

Query: 784 IQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE---LH 840
           I   +            +  + K+  ++   +++ + P LHPGDI++++AVD  +   L 
Sbjct: 503 IATQD----------HDKTGKLKRSILVGNQIIVTRAPALHPGDIQLVDAVDVTDDSPLR 552

Query: 841 HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLT 900
            L++C+VF Q+G R   ++ SG DLDGDL+ + +D+ LIP    +  P EY+ A AK L 
Sbjct: 553 ALHNCIVFSQQGPRDLPSQLSGGDLDGDLFHIIYDQRLIPAY--TVEPAEYDKAPAKDLG 610

Query: 901 RPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKT 960
           RPV+  DI+ FF ++M  + LG I N H + AD    G    +C+ LA+LA+ AVDF KT
Sbjct: 611 RPVEANDIVGFFIEYMKMDRLGQISNKHKIRADVKPNGTRHPDCLTLAKLASDAVDFSKT 670

Query: 961 GKIVTMPAHLK--PK----LYPDFMG---------------------------------- 980
           G    +PA +   PK      PDFM                                   
Sbjct: 671 G----VPADMSRIPKGIDHFRPDFMAPGSHLVINELGAAELAELEEDDIDDPDSISVLDA 726

Query: 981 -KEAYQSYKSNKILGRLYR 998
            K   + Y+S+KILG LYR
Sbjct: 727 DKGRIRYYRSDKILGILYR 745


>gi|453080014|gb|EMF08066.1| RdRP-domain-containing protein, partial [Mycosphaerella populorum
           SO2202]
          Length = 446

 Score =  284 bits (726), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 171/447 (38%), Positives = 246/447 (55%), Gaps = 43/447 (9%)

Query: 487 VFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-K 545
           VF RV+  ++ G  + GR + FLAF ++Q RD  A+FF+     +  DI+ WMG FT  +
Sbjct: 11  VFSRVKRAMAQGINVGGRHYEFLAFGNAQFRDHGAYFFASTTGVTAADIRDWMGDFTSIR 70

Query: 546 NIAKCAARMGQCFSSTYATVEVPPTEVDPE-LPDIKRNGYVFSDGIGKITPDLAMEVAQK 604
            IAK  +R+GQCFS+T A     P  V+ E + D++RNG+ F+DG+GKI+P LA  +A  
Sbjct: 71  IIAKYVSRLGQCFSTTRAI----PHAVNVEKIDDVERNGFCFTDGVGKISPFLARMIAHH 126

Query: 605 LKLDVNPP--PCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTR 662
             +  +    P  +QIR AGCKGV+A  P +  G+++ +R S  KF +    LEIC  ++
Sbjct: 127 YGMANSEQDYPSVFQIRLAGCKGVLAVDP-RLKGMKIQIRPSQQKFPAKSNGLEICRISQ 185

Query: 663 FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAAC--AEQGN 720
           F    LN Q+I +LS L VPDE+F +   +MLS L + L     A E+L       +   
Sbjct: 186 FSTASLNVQLILVLSALGVPDEVFLNKLRNMLSDLQEALDSEQKALELLQKNVDFNQMTI 245

Query: 721 TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWG---LREKARIFVPAGRWLMGCLDELGVL 777
           + A M+  GF    +P +   +TC+R  + W    L+EKARIF+  G +L+GC DE   L
Sbjct: 246 SLACMIFDGFMATKDPFV---MTCLRLWRSWNLKYLKEKARIFIDQGAFLLGCTDESATL 302

Query: 778 EGGQCFIQVSEPFLGNCFSKHGSRFAETKK---------------------LQVIKGFVV 816
            G   F  V++P          S  A+  K                      +V+ G VV
Sbjct: 303 RGH--FKSVADP--NGILKDQQSTEADVDKHDESALPEIFLQIPDAEKPGSYKVVTGIVV 358

Query: 817 IAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE 876
           +A+NP LHPGDIR+++AVD+  L HL +C+V PQ GDR   N  SG DLDGD + V WD+
Sbjct: 359 LARNPSLHPGDIRVVKAVDNAALRHLKNCVVLPQTGDRDVANMCSGGDLDGDDFIVMWDK 418

Query: 877 NLIPPSKKSWPPMEYNAAEAKTLTRPV 903
            LIPP + +  PM+Y + +      PV
Sbjct: 419 ELIPP-EWNHEPMDYTSPDPVMAKGPV 444


>gi|14475569|emb|CAC41974.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
          Length = 1883

 Score =  284 bits (726), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 224/772 (29%), Positives = 371/772 (48%), Gaps = 86/772 (11%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            +R + ITP++   + P ++ S R +RK+   +  F+ V  ++E L+ +      +   P+
Sbjct: 940  IRDVFITPSRTIFIQPTLQRSCRAVRKFG--SSNFIVVKIVNESLEPLQGVNNKH---PL 994

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
              +              R++ IL GG  + G  +S+   S+SQLR+ S+WF S    T  
Sbjct: 995  HEN--------------RIKPILEGGILVGGEIYSYAGNSNSQLREYSSWFVSNQIGTHT 1040

Query: 533  LDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGK 592
              +K W G     N+ K    +G  FS+T  TV +P   +   + DI RN + F++G G+
Sbjct: 1041 --VKIWSGIEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRI-YRIQDITRNTHEFTEGCGE 1097

Query: 593  ITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQ--- 649
            I P+LA  + +    +  P  CAYQ+R  G KGV+       D   + +R SM KF    
Sbjct: 1098 IGPELAKHLNENY--NFRPSTCAYQVRIGGNKGVLVVNNQAPDPSGIYIRPSMVKFNPID 1155

Query: 650  --SHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA 707
                H TLEICS +      LNRQ+I+LLSTL   D +F+++QD  L+++ Q++ D++ +
Sbjct: 1156 CGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNAS 1215

Query: 708  FEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWL 767
             + +     +        ++ G   Q +P++R +L  +   ++  +++K  I +   R L
Sbjct: 1216 KQAIVEFFPD--------ITEGELYQ-DPYIRRILISLYKLKMERIQQKCHIEIKDSRML 1266

Query: 768  MGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGD 827
            +G  D    L     F+Q+ E          G ++      +VI+G V++ KNPC HPGD
Sbjct: 1267 LGVCDPTNSLPPNTVFVQLEEE--DEDDDDDGRKYE-----KVIEGLVMVIKNPCTHPGD 1319

Query: 828  IRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI---PPSKK 884
            +R L+AVD+  L HL + LVF  KGD P+  E SGSDLDGD YF  +D++LI     S+ 
Sbjct: 1320 VRYLKAVDNIRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSESET 1379

Query: 885  SWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENC 944
            ++  +E  +   K      D   +   ++ +   + LG + ++H+  +D  +YGA  +  
Sbjct: 1380 AYLVVETVSNNDKKANVFNDPFALSSMYSTNAERQELGKLYHSHLAISD--QYGANHKYS 1437

Query: 945  ILLAELAATAVDFPKTGKIVTMPAHLKPKL----YPDFMGKEAYQS--YKSNKILGRLYR 998
            I +++     +D+PKTG   T+P  +  +L    YP +M +E      Y+S KI+G++Y 
Sbjct: 1438 IQISKECFKEIDYPKTGIHGTIPKEVNIRLQTVGYPHYMQRENSTRVYYQSKKIMGKMY- 1496

Query: 999  QSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYK 1058
               D  D+ + +    D  P +I  D    V     ++  A      Y  Q++ LL  Y 
Sbjct: 1497 ---DQIDQLVYIG---DFLP-NISLDKSNLVDGYEIYLNSAKILYSQYKLQVHSLLRHYS 1549

Query: 1059 VNREEELVTGHI---WSMPKYNSRKQGELKERLKHSYSALRKEFRQVF-EKMDSDCELLS 1114
               EE ++ G +   +   K +   +GE+K            EF + F E+   +C L+ 
Sbjct: 1550 AESEESIMIGFLDQGFISDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENCLLIH 1609

Query: 1115 EDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDY 1166
                    E+K SAWY V Y         DL++ D A     L F WIA  +
Sbjct: 1610 R----VNIEKKVSAWYHVAYS--------DLKD-DRA-----LGFYWIARSF 1643


>gi|17508365|ref|NP_493057.1| Protein RRF-2 [Caenorhabditis elegans]
 gi|13655331|emb|CAC35914.1| Protein RRF-2 [Caenorhabditis elegans]
          Length = 1579

 Score =  283 bits (725), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 278/1002 (27%), Positives = 449/1002 (44%), Gaps = 182/1002 (18%)

Query: 322  IHYEEGISFEIMFLVNAVMHKGIINQHQ-LSD-----SFFDLLRG---QSREVNVAAL-- 370
            I+  +G  F I +L+  ++ +G I + Q L+D      F  L+     ++ ++  AAL  
Sbjct: 345  INENDGRQFAITYLIECLLSRGAIVKDQVLTDEICWGQFLGLITHYYLENDKLCEAALED 404

Query: 371  --------KHIYSYKWPVFDACKRLKLVQEWL--LKDPELYKGPKQIDDIVEVRRLVITP 420
                    K I S  W  F    + +LV +    + + E+ +G ++      VR+++ TP
Sbjct: 405  LIYLIDGRKRIGSI-WKCFHKICQKRLVMQLTNGMSEQEIEEGYQR------VRKVIFTP 457

Query: 421  TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
            T+    PPE+ + NRVLR +       LRVTF D+  + M AN     +     DI    
Sbjct: 458  TRVIYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRANATGELL-----DIC--- 509

Query: 481  FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDG------------ 528
                      V+  L  G  +  R F FL  SSSQ+RD  A+F  ++             
Sbjct: 510  ----------VKKYLEHGIVVANRDFGFLGCSSSQMRDNGAYFMVKNTDNRHKNACKMNS 559

Query: 529  --KTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYAT-VEVPPTE--VDPELPDIKR- 581
              K ++  ++  +G F   +NI K  AR+GQCF+ +  T V + P    +  +L   +  
Sbjct: 560  KFKPNIDSVRNQLGNFLQIENIPKLMARLGQCFTQSRLTGVSLGPDNYCLTHDLSGGRSS 619

Query: 582  NG--YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP-------- 631
            NG  Y FSDG+G ++ + A EV++ +    + P C +Q RY G KGV+A  P        
Sbjct: 620  NGSEYTFSDGVGMMSYEFAQEVSRLMSFGRSVPSC-FQFRYRGMKGVLAIDPLLDKERNW 678

Query: 632  AKGDGIRMS------LRESMNKFQSHHT---TLEICSWTRFQPGFLNRQIITLLSTLNVP 682
             +  GI +S       R S  KF+        +E+  ++      LN+ +I +L    V 
Sbjct: 679  QEKHGISLSKNIKCVFRPSQIKFEGKQILGDQVEMVKYSSPVLVALNKPLINILD--QVS 736

Query: 683  DEMFWSMQDSMLSKLNQMLVDSDVAF--EVLTAACAEQG--------NTAAIMLSAGFNP 732
            +         + S++ +++    ++F  ++   AC            +   +    GF  
Sbjct: 737  EMQSLECHRRITSRIEELMDLQTLSFAKQMTDEACFRNKLKEFPRRIDIDYLRTIWGFTL 796

Query: 733  QTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPF 790
              EP  R ++       +     K +I +P+  GR ++G +DE G+L+ GQ F+Q ++  
Sbjct: 797  SNEPFFRSLVKASIKFAITKQLFKEQIQIPSELGRSMLGVVDETGILQYGQVFVQYTKNH 856

Query: 791  LGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQ 850
                  +  +R  +    +++ G V++ KNP + PGD+RI EAVD PELHHL D +VFPQ
Sbjct: 857  RNILPPRDSNR--KVLGSEIVTGTVLLTKNPGIVPGDVRIFEAVDIPELHHLCDVVVFPQ 914

Query: 851  KGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLT----RPVD-- 904
             G RPH +E +GSDLDGD Y V WD+ L+    +      ++ A  K L       +D  
Sbjct: 915  HGPRPHPDEMAGSDLDGDEYSVIWDQKLLLERNEE----AFDFAVEKNLQTYEWEDIDDL 970

Query: 905  QRDI-IEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGK- 962
             RD+ +E+  K +V    G I N+H+ ++D  +YG     C+ LA+ +  AVDF K+GK 
Sbjct: 971  MRDVYVEYLKKDLV----GLIANSHLHNSD--QYGLTSRVCMNLAKKSCQAVDFSKSGKP 1024

Query: 963  -------------IVTMPAHLKPKLYPDF-MGKEAYQSYKSNKILGRLYRQSKDAYDEDI 1008
                            M    + +  PD+ +G +    Y S ++ G+L+R+ +   D  +
Sbjct: 1025 PDELQTTWKTDDATGEMIPPERAERVPDYHVGSDHMPKYVSPRLCGKLFREFQ-GIDNAM 1083

Query: 1009 SVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTG 1068
             +S E       I  D  + V    +++ DA  Q  SY+GQL   ++ Y +  E E+++G
Sbjct: 1084 KISEEKS-EQYKIEVDESIRVDGFEEYMEDAKKQLASYNGQLKSTMDTYGIQSEGEIMSG 1142

Query: 1069 HIWSMPK------------YNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSE- 1115
             I  M              YN+ +  E K  +    S  R  F Q F      C LL + 
Sbjct: 1143 CIIEMRNRISDSDQDDMSFYNTNRMIETK--MTALVSKFRTIFFQQFGGFQEVCTLLPDA 1200

Query: 1116 -----------DEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIAN 1164
                       +  N    +KA AWY+  Y  E  K         S R    LSFAWIA 
Sbjct: 1201 YNESNFFNFRCENPNEEIRKKAVAWYRACY--ECAK---------STREPRKLSFAWIAY 1249

Query: 1165 DYLARIK----IRCREMANIDTSKPV-----NYLARYVADRI 1197
            D +A+IK    +   EM NI  + P+     ++ ARY+ D +
Sbjct: 1250 DVIAKIKETKVLENVEM-NIGGANPMYTYLEHHRARYINDHV 1290


>gi|66804721|ref|XP_636093.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
 gi|60464394|gb|EAL62541.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
          Length = 2417

 Score =  283 bits (724), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 224/772 (29%), Positives = 372/772 (48%), Gaps = 86/772 (11%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            +R + ITP++   + P ++ S R +RK+   +  F+ V  ++E L+ +      +   P+
Sbjct: 1193 IRDVFITPSRTIFIQPTLQRSCRAVRKFG--SSNFIVVKIVNESLEPLQGVNNKH---PL 1247

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
              +              R++ IL GG  + G  +S+   S+SQLR+ S+WF S    T  
Sbjct: 1248 HEN--------------RIKPILEGGILVGGEIYSYAGNSNSQLREYSSWFVSNQIGTHT 1293

Query: 533  LDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGK 592
              +K W G     N+ K    +G  FS+T  TV +P   +   + DI RN + F++G G+
Sbjct: 1294 --VKIWSGIEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRI-YRIQDITRNTHEFTEGCGE 1350

Query: 593  ITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQ--- 649
            I P+LA  + +    +  P  CAYQ+R  G KGV+       D   + +R SM KF    
Sbjct: 1351 IGPELAKHLNENY--NFRPSTCAYQVRIGGNKGVLVVNNQAPDPSGIYIRPSMVKFNPID 1408

Query: 650  --SHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA 707
                H TLEICS +      LNRQ+I+LLSTL   D +F+++QD  L+++ Q++ D++ +
Sbjct: 1409 CGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNAS 1468

Query: 708  FEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWL 767
             + +     +        ++ G   Q +P++R +L  +   ++  +++K  I +   R L
Sbjct: 1469 KQAIVEFFPD--------ITEGELYQ-DPYIRRILISLYKLKMERIQQKCHIEIKDSRML 1519

Query: 768  MGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGD 827
            +G  D    L     F+Q+ E    +     G ++      +VI+G V++ KNPC HPGD
Sbjct: 1520 LGVCDPTNSLPPNTVFVQLEEEDEDD--DDDGRKYE-----KVIEGLVMVIKNPCTHPGD 1572

Query: 828  IRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI---PPSKK 884
            +R L+AVD+  L HL + LVF  KGD P+  E SGSDLDGD YF  +D++LI     S+ 
Sbjct: 1573 VRYLKAVDNIRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSESET 1632

Query: 885  SWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENC 944
            ++  +E  +   K      D   +   ++ +   + LG + ++H+  +D  +YGA  +  
Sbjct: 1633 AYLVVETVSNNDKKANVFNDPFALSSMYSTNAERQELGKLYHSHLAISD--QYGANHKYS 1690

Query: 945  ILLAELAATAVDFPKTGKIVTMPAHLKPKL----YPDFMGKEAYQS--YKSNKILGRLYR 998
            I +++     +D+PKTG   T+P  +  +L    YP +M +E      Y+S KI+G++Y 
Sbjct: 1691 IQISKECFKEIDYPKTGIHGTIPKEVNIRLQTVGYPHYMQRENSTRVYYQSKKIMGKMY- 1749

Query: 999  QSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYK 1058
               D  D+ + +    D  P +I  D    V     ++  A      Y  Q++ LL  Y 
Sbjct: 1750 ---DQIDQLVYIG---DFLP-NISLDKSNLVDGYEIYLNSAKILYSQYKLQVHSLLRHYS 1802

Query: 1059 VNREEELVTGHI---WSMPKYNSRKQGELKERLKHSYSALRKEFRQVF-EKMDSDCELLS 1114
               EE ++ G +   +   K +   +GE+K            EF + F E+   +C L+ 
Sbjct: 1803 AESEESIMIGFLDQGFISDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENCLLIH 1862

Query: 1115 EDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDY 1166
                    E+K SAWY V Y         DL++ D A     L F WIA  +
Sbjct: 1863 R----VNIEKKVSAWYHVAYS--------DLKD-DRA-----LGFYWIARSF 1896


>gi|358366477|dbj|GAA83098.1| rna-dependent rna polymerase [Aspergillus kawachii IFO 4308]
          Length = 1212

 Score =  282 bits (722), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 228/761 (29%), Positives = 361/761 (47%), Gaps = 110/761 (14%)

Query: 327  GISFEIMFLV-NAVMHKGIINQ--HQLSDSFFDLLRGQSREVNVAALKHIYSY-KWP--- 379
            GI F++  L  NA +    +     +L  ++ +    Q + ++V ALK ++    WP   
Sbjct: 318  GILFQLQALAYNAYLLPRTVQSLTQELVKAYREDTAAQRKPISVLALKKLFDMIDWPSPH 377

Query: 380  -------VFDACKRLKLVQEWLLKDPELYK---GPKQIDDIVEVRRLVITPTKAYCLPPE 429
                   V      LK  Q+ +L+D  +     GP +  ++  + ++++TPT+     PE
Sbjct: 378  SNPTDYEVGALMAALKQNQKDVLQDLAVSGDILGPSE--NLTPIHKVMVTPTRVTLHGPE 435

Query: 430  VELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFK 489
            +E  NR+LR++    D F+RV F DE  Q                D+  NS      VF 
Sbjct: 436  LEPRNRILRRFPKHHDFFIRVQFCDENGQ----------------DLHFNSRVHYDDVFS 479

Query: 490  RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS----EDGK-TSVLDIKKWMGRFTD 544
            R +S+L+ G  + GR +SFL +S S LR  + WF S    E G+  +   I K +G F+ 
Sbjct: 480  RFKSVLTRGIQIAGRTYSFLGWSHSSLRSHAVWFSSPFVDESGQFQTHFSIIKALGDFSK 539

Query: 545  -KNIAKCAARMGQCFSSTYATVEVPPTEVD-PELPDIKRNG--YVFSDGIGKITPDLAME 600
             ++ A+CAAR+GQ F+ T+  + +   +++  E+ D+  N    VFSDG+G ++ D+A  
Sbjct: 540  IQSPARCAARIGQAFTDTHYAISLSEYDINVSEVADVTSNDGKRVFSDGVGTLSWDVAET 599

Query: 601  VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSW 660
            +   +      P C +Q+R  G KG++A    +  G ++++R SM KFQ     LEIC  
Sbjct: 600  IWHHIPEKKGLPTC-FQVRLGGAKGMLAV-DGRLSGSQVNIRPSMIKFQGDMKDLEICDM 657

Query: 661  TRFQPGF-LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQG 719
                 G  LNRQ+I +L  +  PDE F ++Q++ L+KL  +   +  + EV     A   
Sbjct: 658  AAKPMGLVLNRQMIKILEDMGTPDEWFITLQEAALTKLRSVTASAHNS-EVFIKKQAVGD 716

Query: 720  NTAAIML-----SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDEL 774
            +     L         + + EP +R ++  +   +L  L+ KARI V  G  L G +DE 
Sbjct: 717  SIGLYRLFRHCHLRDLDYKKEPFIRSVVEAVVLKELRLLKHKARIPVFKGITLFGVMDET 776

Query: 775  GVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAV 834
            G+LE  Q ++   EP  G       S            G V++ ++P LH GDI+  + V
Sbjct: 777  GLLEAEQVYV-TYEPVEGRHAPPPNS------------GTVLVTRSPALHDGDIQYAQNV 823

Query: 835  DHPELH---HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEY 891
              P+ H    L +C+VF  KG R   ++ SG DLDGD++ V WD +  P   +++ P +Y
Sbjct: 824  IPPDNHPLAELTNCIVFSSKGYRDLPSQLSGGDLDGDIFNVIWDTDAYP--VRTFAPADY 881

Query: 892  NAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELA 951
                   + RPV++ D+ +FF   M  ++LG I   H++ AD  E G     C  LA+L 
Sbjct: 882  PRVSPVDIGRPVERDDMAQFFLDFMKTDHLGMIATRHMIMADQEEEGTSHPVCRQLAQLH 941

Query: 952  ATAVDFPKTGKIVTMPAHLK--PK---LYPDFMG--------------------KEAYQS 986
            +TAVDF KTG    +P  L   PK     PDFM                     + AY  
Sbjct: 942  STAVDFSKTG----IPVQLGDIPKGNPFRPDFMAPGPVARIHNKSEIELEEYVIQTAYDE 997

Query: 987  ----------YKSNKILGRLYRQSKDAYDEDISVSSEVDIN 1017
                      Y+S+KILG+LYR   + +     + S+V  N
Sbjct: 998  DNDLEPFHRYYRSDKILGKLYRGVDERHIWQKDIQSKVQPN 1038


>gi|330921324|ref|XP_003299375.1| hypothetical protein PTT_10351 [Pyrenophora teres f. teres 0-1]
 gi|311326958|gb|EFQ92511.1| hypothetical protein PTT_10351 [Pyrenophora teres f. teres 0-1]
          Length = 1237

 Score =  282 bits (722), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 212/646 (32%), Positives = 319/646 (49%), Gaps = 98/646 (15%)

Query: 415  RLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVR 474
            +  +TPT      P+ ++SNR+LRKY    + F+RV F DE       + LS F  P   
Sbjct: 443  KATVTPTGILLRGPDWDVSNRILRKYGTRTEYFMRVFFADE-------DGLSVFHDP--- 492

Query: 475  DITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FSEDG-KT 530
                   + +  V++R RS+L  G  +  R + FL FS + LR   AWF   F  +G + 
Sbjct: 493  ------RASQDNVYERFRSVLRNGISVSERTYQFLGFSHASLRTHQAWFMAPFEMNGTRF 546

Query: 531  SVLDIKKWMGRFTDKNI-AKCAARMGQCFSSTYATVEVPPTE-VDPELPDIKRNGYVFSD 588
               DI   +G F+  +  A+C+AR+GQ FS T  +V V  T  V    PDI RNG  FSD
Sbjct: 547  RARDIISDLGDFSHIHCSARCSARIGQAFSDTIFSVPVSSTAYVTETKPDIVRNGRTFSD 606

Query: 589  GIGKITPDLAMEVAQKLKLDVNPP------PCAYQIRYAGCKGVVACWPAKGDGIRMSLR 642
            G G I+ ++  +V   L     PP      P   QIR+ G KGV++   +   G ++ +R
Sbjct: 607  GCGTISLEILRKVWNTL-----PPERKTQRPTILQIRFRGAKGVLSLDESLA-GEQLHIR 660

Query: 643  ESMNKFQSHHT--TLEICSWTRFQP--GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN 698
            +SM K+ +  T   LE+C    ++P   FLN Q I +L  L VP   F ++QD  ++ L 
Sbjct: 661  QSMTKYIAKETWRDLELCG-AAYKPLQVFLNHQFIKILEDLGVPARNFKAVQDEAVNALK 719

Query: 699  QMLVDSDVAFEVL----TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLR 754
             +      A   L    +   A+      +M   G +   +  L  ++       L  L+
Sbjct: 720  MITEHPLNAASFLEYSHSGVYAKVPRLFELMHQIGLSFHADRFLTDIVEVAAMTNLRSLK 779

Query: 755  EKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGF 814
             +ARI +  G  L G +DE   L+ GQ +I   +      + K GS   + ++  ++   
Sbjct: 780  YRARIPIEQGHLLYGIMDETNFLQEGQVYIATQD------YEKSGS--GKLQRRILVGER 831

Query: 815  VVIAKNPCLHPGDIRILEAVDHP---ELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYF 871
            +VI + P LHPGD++++ AVD P    L  L++C+VF Q+G R   ++ SG DLDGDL+ 
Sbjct: 832  IVITRAPALHPGDVQLVTAVDVPANSSLRALHNCVVFSQRGARDLPSQLSGGDLDGDLFH 891

Query: 872  VTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVH 931
            + +D+ L+P    + PP +Y +  A+ L RPV+  DI++FF +HM  + LG I N H + 
Sbjct: 892  IIYDQRLVP--DFTVPPADYKSNGARDLGRPVEVNDIVDFFIEHMNMDRLGQISNKHKIR 949

Query: 932  ADHSEYGALDENCILLAELAATAVDFPKTG---KIVTMPA---HLKP------------- 972
            AD S  G  D  C+LLA+LA+ AVDF K+G    I  +P    H++P             
Sbjct: 950  ADKST-GTKDPECLLLAQLASDAVDFSKSGIPADISKIPRGFDHIRPDFMAPGTNLVVNE 1008

Query: 973  -------KLYPDFM-------------GKEAYQSYKSNKILGRLYR 998
                   +L PD +             G+  Y  YKS+KILG LYR
Sbjct: 1009 LGAAELEELEPDDIDDPDGVSVLDADKGRSRY--YKSDKILGILYR 1052


>gi|342878783|gb|EGU80072.1| hypothetical protein FOXB_09347 [Fusarium oxysporum Fo5176]
          Length = 1277

 Score =  282 bits (722), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 237/777 (30%), Positives = 356/777 (45%), Gaps = 115/777 (14%)

Query: 403  GPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNA 462
            G K  D  + + + ++TPT+     PE +  NRVLRKY +  D FLRV F +E  Q    
Sbjct: 429  GVKIPDHQIYIFKAMVTPTRVLLSGPEPDSKNRVLRKYHENNDYFLRVLFCEEDGQ---- 484

Query: 463  NVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAW 522
                        D+  +       +F R R ++  G  + GRKF FL FS S LR  SAW
Sbjct: 485  ------------DLNFHPKVDNEPIFARFRHVMDEGITIAGRKFDFLGFSHSSLRSHSAW 532

Query: 523  F---FSEDG--KTSVLDIKKWMGRFTDKNI-AKCAARMGQCFSSTYATVEVPPTEVDPE- 575
            F   F++    + +   I + +G F++  + AKCAAR+GQ FS T   + +  T +    
Sbjct: 533  FSAPFTDSNFERQTPAAILQALGDFSEIRVPAKCAARIGQAFSETPYAIPIFETGICHRF 592

Query: 576  LPDIKR--NGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAK 633
            +PD+K      VFSDG+G I+ +   E+   L +    P C  QIR+ GCKG+++     
Sbjct: 593  IPDVKSEDGTRVFSDGVGTISREALEEIWPYLSMRAAAPTC-LQIRWGGCKGMLSLDTRL 651

Query: 634  GDGIRMSLRESMNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQD 691
               +    +ESM KF S     L IC + ++     LNRQ+I +L  +   ++ F+ +Q+
Sbjct: 652  KGRVFCIRQESMMKFPSDDLRELGICDASSKPLRLVLNRQMIKILEDMGTTNDWFFRLQN 711

Query: 692  SMLSKLNQMLVDSDVA--FEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGMLTCIRA 747
            + L  L     D+     F    A     G    +  +   G + + +  L+  +  +  
Sbjct: 712  NALDILRNATADATNTSYFLDYQAIGVNMGLPKLVKQLEKMGIDYRRDKFLKSAVEHVVF 771

Query: 748  AQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKK 807
             +L  L+ KARI V  G  L G +DE G L+  + F+   +         HG        
Sbjct: 772  RELRLLKHKARIPVDKGVTLFGVMDETGFLDADEVFVTYDK--------THGVYRGRRIN 823

Query: 808  LQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL---YDCLVFPQKGDRPHTNEASGSD 864
              +  G +++ ++P LHPGDI+I+  V  P+ H L    +C+VF QKG R   +  SG D
Sbjct: 824  STLKDGQIIVTRSPALHPGDIQIVNQVTPPQGHSLRSLQNCIVFSQKGKRDLPSMLSGGD 883

Query: 865  LDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTI 924
            LDGDLY + WD + +P     + P +Y   + K L RPV  +DI +FF   M  + LG I
Sbjct: 884  LDGDLYNIIWDPDALP--DNYFLPADYPRVKPKPLDRPVKPQDIADFFVDFMRTDILGMI 941

Query: 925  CNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK-PKLYPDFM---- 979
               HVV AD+ E G    +CI LA + +TAVDF KTG  V + A  K P   PDF+    
Sbjct: 942  ATRHVVLADYHEQGTTHPDCISLAGMHSTAVDFSKTGIPVDVKALPKNPPFRPDFLAAAP 1001

Query: 980  ------------------------GKEAYQS--YKSNKILGRLYRQ--SKDAYDEDIS-- 1009
                                    G   Y++  Y+S+KILGRLYR    K  +DEDI   
Sbjct: 1002 PLKTYEKGQIAHLRDDDEDDNADDGMARYKAKYYESDKILGRLYRNVDEKKIWDEDIHRI 1061

Query: 1010 ---------------VSSEVDINPVDIHYDTDLEVPESVDFIADAWNQK--CSYDGQLNG 1052
                           V SEV+       Y  D++     D   +AW  +   SY+  + G
Sbjct: 1062 INTAGPSVWDQLLTVVESEVN------KYKLDVDWTRRSD---EAWKIRGLLSYESTITG 1112

Query: 1053 LLEQYKVN-----REEELVTGHIWSMPKYNSRKQGE----LKERLKHSYSALRKEFR 1100
             +  +  N      E E+  G I +     +R+QG+    LKE +    + + K+ R
Sbjct: 1113 KMWDFSENPRAPLTEVEVFCGFILNKRGAQTRRQGDSSIKLKEEIDRIMTWIVKQIR 1169


>gi|328872313|gb|EGG20680.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
          Length = 2876

 Score =  282 bits (721), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 236/791 (29%), Positives = 365/791 (46%), Gaps = 116/791 (14%)

Query: 409  DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYF 468
            + V ++++ +TPT+     PE+   NR +R +   ADRF++V F++E L           
Sbjct: 1266 NYVYIKKVFVTPTRIIFQKPEIMQCNRSIRLFG--ADRFMQVQFVEENLDHR-------- 1315

Query: 469  IAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCG-RKFSFLAFSSSQLRDCSAWFFSED 527
               I    +L S++          S++  G ++ G   F +L  SSSQ R   +WF+ +D
Sbjct: 1316 ---IELQQSLASYTN---------SMMKKGIHVPGFGTFHYLGNSSSQARKNMSWFYCQD 1363

Query: 528  ---------GKTSVLDIKK----WMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVD 573
                     G+  V  +       +G FT+ +N  K    +   F+ST  ++ +   +  
Sbjct: 1364 KMENAKADGGEEQVYSLDHVRDTLLGEFTNFENPRKYLRAINLVFASTMPSIVIAEEDYH 1423

Query: 574  PELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAK 633
             ++PD+  NGY F++GIG I    A +V +    +     CA+QIR  G KGVV   P  
Sbjct: 1424 EDIPDVIVNGYNFTEGIGYIGWKTAQKVNEAC--EYIQSTCAFQIRIGGNKGVVVVRPDI 1481

Query: 634  GDGIRMSLRESMNKFQSHHT----TLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSM 689
             +G+   LR+SM KF +       TLEI S   ++P  LNRQ+I LLS L VPD  F ++
Sbjct: 1482 QNGVY--LRKSMKKFSTTSNEWSRTLEIVSIPAYKPCTLNRQVINLLSGLGVPDRCFLTL 1539

Query: 690  QDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQ 749
                L++L  +L    VA   L++   +  +   I+        ++P +RG L  I   +
Sbjct: 1540 LSQSLNELASLLHLPKVAKRALSSDLFDDVSDGEIL--------SDPMIRGTLHRIYCKR 1591

Query: 750  LWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQ 809
            L   R+K  I +   R L+G  D+   L+ GQ F+QVS+               E  +LQ
Sbjct: 1592 LVEYRDKCFIPIDTARTLLGVTDDTASLKEGQVFLQVSD---------------ENGELQ 1636

Query: 810  VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDL 869
            ++ G V +AKNPCLH GD+RI++AVD P LHHL D + F Q G  P   E SGSDLDGD 
Sbjct: 1637 IVTGPVAVAKNPCLHAGDVRIVQAVDIPALHHLVDVVCFSQNGSVPTFQECSGSDLDGDR 1696

Query: 870  YFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHV 929
            YFV +D  +I   K+    +  +A  A +    + Q  +I  +  ++    LG I  AH+
Sbjct: 1697 YFVLFDREMIGEIKQHDAFLGEDAVAADS-DPTITQSSLIAQYITNIQKGTLGMIALAHL 1755

Query: 930  VHAD-HSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKL------YPDFMGKE 982
               D HS    L    I LA      VD  KTG    +P  +   L      +P+FM K 
Sbjct: 1756 AVCDVHSPKHPL---AIALAIEHFKEVDRVKTGVGGEIPTDVFQILGEQFDKFPNFMEKS 1812

Query: 983  AYQS--YKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAW 1040
              Q   ++S+KILGRLY Q        +S+ + +   P ++  D  L  P    + ADA 
Sbjct: 1813 LPQKSYWESDKILGRLYAQC-------VSLQNVIRFMP-EVKVDPHLLTPGWETYQADAI 1864

Query: 1041 NQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFR 1100
                 Y  Q+  LL++Y +  EE+++  ++      ++  +  + E   H Y+ ++  FR
Sbjct: 1865 ETYRRYRHQVGSLLKRYDIENEEDVLIQYVDETMSGHTLDKVVVMEIFNH-YTVIQNTFR 1923

Query: 1101 QVF--------EKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSAR 1152
            + F        E +D        +      E+K SAWY   Y              D+ +
Sbjct: 1924 EQFLRPFQRAGETIDQTITTHQHE-----IEKKVSAWYHTAY-------------SDNKK 1965

Query: 1153 SVVLLSFAWIA 1163
                LSF WI 
Sbjct: 1966 LTKFLSFYWIV 1976


>gi|74830367|emb|CAI39056.1| RNA-dependent RNA polymerase [Paramecium tetraurelia]
          Length = 1367

 Score =  281 bits (720), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 198/633 (31%), Positives = 320/633 (50%), Gaps = 81/633 (12%)

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
            +V  RR+ +TP+       + E+++ +LR++ ++ + FLRV + DE  Q M  N+     
Sbjct: 521  LVYTRRVSMTPSGILYFNKQPEVTSGILRQHYNIVEYFLRVHYEDEN-QDMVLNI----- 574

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF--FSED 527
             P +      +F     +F  ++        + G+ F    +SSS LR  + WF  F+  
Sbjct: 575  -PYITQTYYYNF-----MFPTLK--------ILGQHFELFTWSSSSLRAGTCWFIDFNGA 620

Query: 528  GKTSVLDIKKWMGRFTD---KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGY 584
            GK    DI K +G FT+     IAK AAR+GQ  S++ +   V    +  +   + +N  
Sbjct: 621  GKQRT-DIIKSIGNFTNLKYDEIAKNAARLGQNLSTSISVDCVGGINILIKDDLVDKNNK 679

Query: 585  VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
            +++DGIGKI+ DL  ++ QK++++      A QIRY G KG++       +   + LR S
Sbjct: 680  LYTDGIGKISQDLIDQIRQKMRVNSKIKISAIQIRYEGAKGLLVL-DESLEQKTIVLRRS 738

Query: 645  MNKF---QSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
            M K+   + +   ++I  + +F+ G+LNRQII LL TL V ++ F  +QD  L K+  + 
Sbjct: 739  MIKYNPAKGYPNKIQILDFNKFRGGYLNRQIIILLLTLQVNEKAFQELQDEYLKKIEDLQ 798

Query: 702  VDSDVAFEVLTA-ACAEQGNTAAIM--LSAGFNPQTEPHL--RGMLTCIRAAQLWGLREK 756
            +     ++  +   C EQ +   IM  L A  N   E ++  +G+L+ ++   L  LR+K
Sbjct: 799  MKDASIYKYFSVDYCDEQIDLPNIMDALRAYINIGMEDNILCQGVLSKLKQRGLLQLRKK 858

Query: 757  ARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV----IK 812
              I V     ++G +DE  +L+  + +  V +               E    QV    I+
Sbjct: 859  TSILVEKAARVLGVIDEHNLLQPNEIYCLVQD---------------ENNDTQVEPENIQ 903

Query: 813  GFVVIAKNPCLHPGDIRILEAVDHPEL----------HHLYDCLVFPQKGDRPHTNEASG 862
            G V++ +NPCLHPGDI+ L A+   E+            L +CLVFP  G+     + +G
Sbjct: 904  GEVLVTRNPCLHPGDIKKLNAISTQEILKRNGSKNPYSQLINCLVFPACGNSLPC-QIAG 962

Query: 863  SDLDGDLYFVTWDENLIPPSK----------------KSWPPMEYNAAEAKTLTRPVDQR 906
             DLDGDLYF+ WD  L+PP +                K     E N    + + +  D +
Sbjct: 963  GDLDGDLYFICWDNRLLPPVQAKSMVYDNKKPNQVQYKKIDFRENNQRFHENVDKNFDTK 1022

Query: 907  DIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTM 966
            ++ +F   ++ +E LG I N+H+  AD S+  A D NC+ LAEL + AVDF KTGK V +
Sbjct: 1023 NMFDFLYFYLNSETLGLIDNSHLAWADKSDKKANDPNCLELAELHSDAVDFVKTGKQVFL 1082

Query: 967  PAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQ 999
               L  K++PD+M KE   +Y+S  I+G+LYRQ
Sbjct: 1083 DVKLLSKIFPDYMEKEQSVTYESQTIIGKLYRQ 1115


>gi|145498970|ref|XP_001435471.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402604|emb|CAK68074.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1343

 Score =  281 bits (720), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 198/633 (31%), Positives = 320/633 (50%), Gaps = 81/633 (12%)

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
            +V  RR+ +TP+       + E+++ +LR++ ++ + FLRV + DE  Q M  N+     
Sbjct: 497  LVYTRRVSMTPSGILYFNKQPEVTSGILRQHYNIVEYFLRVHYEDEN-QDMVLNI----- 550

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF--FSED 527
             P +      +F     +F  ++        + G+ F    +SSS LR  + WF  F+  
Sbjct: 551  -PYITQTYYYNF-----MFPTLK--------ILGQHFELFTWSSSSLRAGTCWFIDFNGA 596

Query: 528  GKTSVLDIKKWMGRFTD---KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGY 584
            GK    DI K +G FT+     IAK AAR+GQ  S++ +   V    +  +   + +N  
Sbjct: 597  GKQRT-DIIKSIGNFTNLKYDEIAKNAARLGQNLSTSISVDCVGGINILIKDDLVDKNNK 655

Query: 585  VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
            +++DGIGKI+ DL  ++ QK++++      A QIRY G KG++       +   + LR S
Sbjct: 656  LYTDGIGKISQDLIDQIRQKMRVNSKIKISAIQIRYEGAKGLLVL-DESLEQKTIVLRRS 714

Query: 645  MNKF---QSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
            M K+   + +   ++I  + +F+ G+LNRQII LL TL V ++ F  +QD  L K+  + 
Sbjct: 715  MIKYNPAKGYPNKIQILDFNKFRGGYLNRQIIILLLTLQVNEKAFQELQDEYLKKIEDLQ 774

Query: 702  VDSDVAFEVLTA-ACAEQGNTAAIM--LSAGFNPQTEPHL--RGMLTCIRAAQLWGLREK 756
            +     ++  +   C EQ +   IM  L A  N   E ++  +G+L+ ++   L  LR+K
Sbjct: 775  MKDASIYKYFSVDYCDEQIDLPNIMDALRAYINIGMEDNILCQGVLSKLKQRGLLQLRKK 834

Query: 757  ARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV----IK 812
              I V     ++G +DE  +L+  + +  V +               E    QV    I+
Sbjct: 835  TSILVEKAARVLGVIDEHNLLQPNEIYCLVQD---------------ENNDTQVEPENIQ 879

Query: 813  GFVVIAKNPCLHPGDIRILEAVDHPEL----------HHLYDCLVFPQKGDRPHTNEASG 862
            G V++ +NPCLHPGDI+ L A+   E+            L +CLVFP  G+     + +G
Sbjct: 880  GEVLVTRNPCLHPGDIKKLNAISTQEILKRNGSKNPYSQLINCLVFPACGNSLPC-QIAG 938

Query: 863  SDLDGDLYFVTWDENLIPPSK----------------KSWPPMEYNAAEAKTLTRPVDQR 906
             DLDGDLYF+ WD  L+PP +                K     E N    + + +  D +
Sbjct: 939  GDLDGDLYFICWDNRLLPPVQAKSMVYDNKKPNQVQYKKIDFRENNQRFHENVDKNFDTK 998

Query: 907  DIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTM 966
            ++ +F   ++ +E LG I N+H+  AD S+  A D NC+ LAEL + AVDF KTGK V +
Sbjct: 999  NMFDFLYFYLNSETLGLIDNSHLAWADKSDKKANDPNCLELAELHSDAVDFVKTGKQVFL 1058

Query: 967  PAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQ 999
               L  K++PD+M KE   +Y+S  I+G+LYRQ
Sbjct: 1059 DVKLLSKIFPDYMEKEQSVTYESQTIIGKLYRQ 1091


>gi|241633126|ref|XP_002410398.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
 gi|215503415|gb|EEC12909.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
          Length = 529

 Score =  281 bits (718), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 191/542 (35%), Positives = 289/542 (53%), Gaps = 29/542 (5%)

Query: 535  IKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVP-PTEVDPELPDI-----KRNG--YV 585
            I++WMG F++  ++AK  ARMGQCFSST  +V+VP   +   + PDI      R+G  ++
Sbjct: 1    IRRWMGDFSNIPSVAKKMARMGQCFSSTEESVKVPLDGKAVEDRPDIVGGKHPRSGRPFI 60

Query: 586  FSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESM 645
            FSDGIG I+  L  +V +KL++     P A QIRYAG KG++   P    G ++ LRESM
Sbjct: 61   FSDGIGMISQPLLEKVCKKLEM--AQIPSAIQIRYAGYKGMLCVNPLL-PGDKLVLRESM 117

Query: 646  NKFQ-SHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDS 704
             KF  S   +LE+   +  +P  LNR +IT+L  L VP  +F  +Q  M+      LV  
Sbjct: 118  RKFTCSSSDSLEVIKVSAPRPVCLNRPLITILEQLGVPSRVFLCLQQKMVLMFADALVCE 177

Query: 705  DVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVP-- 762
              A +VL    +       + +  G      P +R +L  +  + + GL  K+RI VP  
Sbjct: 178  STALQVLCTYLSGALPFRRLRMH-GLCLTRNPFVRSLLYTVYKSTMDGLHTKSRIAVPLN 236

Query: 763  AGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPC 822
             GR ++G LDE   L+ GQ F+Q +   LG           +T+ +    G V++ K PC
Sbjct: 237  KGRNMLGVLDETDTLKYGQVFVQYTA--LGPDTEGQDDGLPKTRII-FCTGAVLVTKCPC 293

Query: 823  LHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI--P 880
            LHPGD+R   AVD P LHH+ DC+VFP +G RPH NE +GSDLDGD Y V W ++L+   
Sbjct: 294  LHPGDVRKFTAVDVPALHHVKDCVVFPARGPRPHPNEMAGSDLDGDEYVVIWKKDLLFPG 353

Query: 881  PSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGAL 940
            P++K+   M ++   A           +I+F   ++ N+N+G + NAH+  AD  E G  
Sbjct: 354  PNRKA---MVFSDHSAPCDANKSLLEGMIQFVCNYIKNDNVGIMSNAHLAWADSLEDGIF 410

Query: 941  DENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQ-SYKSNKILGRLYRQ 999
             + C+ +A   +T +DF KTG+   +    KP  YPDFM K + + +Y+S ++LG LYR 
Sbjct: 411  SKQCLQIARKISTCLDFAKTGETSYLNKDEKPIQYPDFMEKGSSKDTYRSKRVLGHLYRL 470

Query: 1000 SKDAYDEDISVSSEVDINPVDIHYDTDL-EVPESVDFIADAWNQKCSYDGQLNGLLEQYK 1058
             +     +  V ++      D   D  L  +P   ++ A A + + +Y  Q+  +  QY 
Sbjct: 471  HRSL---EAVVGTDFQTCVEDGDADCSLFALPGWEEYAAAAESVRANYASQMARIRRQYG 527

Query: 1059 VN 1060
            + 
Sbjct: 528  IK 529


>gi|169625035|ref|XP_001805922.1| hypothetical protein SNOG_15784 [Phaeosphaeria nodorum SN15]
 gi|160705585|gb|EAT76879.2| hypothetical protein SNOG_15784 [Phaeosphaeria nodorum SN15]
          Length = 1234

 Score =  281 bits (718), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 209/609 (34%), Positives = 307/609 (50%), Gaps = 69/609 (11%)

Query: 406  QIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVL 465
            Q D +V   +  ITPT  +   P+ + SNR+LRKY    D F+RV+F DE       + +
Sbjct: 427  QQDHVVLTHKATITPTGIFLRGPDADTSNRILRKYSQYTDYFMRVSFTDE-------DGV 479

Query: 466  SYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS 525
            S F  P          + +  V++R R IL  G ++ GR F FL FS + LR    WF +
Sbjct: 480  SVFHDPK---------ASQHEVYERFRKILREGIHVAGRHFEFLGFSHASLRCHQVWFMA 530

Query: 526  ----EDGKTSVLDIKKWMGRFTDKNI-AKCAARMGQCFSSTYATVEVPPTEVDPELP-DI 579
                +       D+ + +G F      A+CAAR+GQ FS T   V++P T    E   DI
Sbjct: 531  SFIFKGLPICARDVIQNLGDFNGFTCSARCAARIGQAFSDTIFAVQIPSTATILETKEDI 590

Query: 580  KRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPP-----PCAYQIRYAGCKGVVACWPAKG 634
             RN  VFSDG G     +++E+ Q L   +NP      P   QIR  G KGV++   +  
Sbjct: 591  TRNNRVFSDGCGT----MSLELFQLLWRKLNPQQRRKRPTVLQIRCRGAKGVLSL-DSSL 645

Query: 635  DGIRMSLRESMNKF--QSHHTTLEICSWTRFQP--GFLNRQIITLLSTLNVPDEMFWSMQ 690
             G  + +R+SM KF   S    LEICS   ++P   +LN Q I +L  L VP + F  +Q
Sbjct: 646  VGEELHIRKSMTKFIAGSEWRDLEICS-AAYRPLRVYLNHQFIKILEDLGVPPQNFIKVQ 704

Query: 691  DSMLSKLNQMLVDSDVAFEVL-------------TAACAEQGNTAAIMLSAGFNPQTEPH 737
            +    +L  ++     A + L             +A  A+      +M  AG + QT+  
Sbjct: 705  NEARKQLELIVKHPLNAADFLRKHKTNIRTGYSHSADHAKIPRLFELMHYAGLSFQTDQF 764

Query: 738  LRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSK 797
            L  ++     + +  L+ +ARI V +G  L G +DE   L+ G+ ++   +       + 
Sbjct: 765  LCEIVEVAAMSSIRDLKYRARIPVESGHLLYGIMDETNTLKEGEVYVATEDE------TP 818

Query: 798  HGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDR 854
             G R    +K  +I   VV+ + P LHPGD++++ AV+ P+   L  L++C+VF Q+G R
Sbjct: 819  SGRR----EKNILIGDRVVVTRAPALHPGDVQLVSAVNVPDGSPLRSLHNCIVFSQQGAR 874

Query: 855  PHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAK 914
               ++ SG DLDGDL+ V WD  LIP  K + P  +Y AA    L RPV+  DI++FF  
Sbjct: 875  DLPSQLSGGDLDGDLFHVIWDPLLIP--KYTVPAADYAAAAPFNLGRPVEVNDIVDFFIG 932

Query: 915  HMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG---KIVTMPAHLK 971
             M N+ LG I N H + AD  E G  D +CILLA+LA+ AVDF K+G   K   +P  + 
Sbjct: 933  FMQNDKLGQISNMHKIRADKRENGTFDSDCILLAKLASDAVDFSKSGVPAKTSDIPRDID 992

Query: 972  PKLYPDFMG 980
              + PDFM 
Sbjct: 993  -IIRPDFMA 1000


>gi|171683804|ref|XP_001906844.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941862|emb|CAP67515.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1230

 Score =  280 bits (717), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 207/673 (30%), Positives = 335/673 (49%), Gaps = 75/673 (11%)

Query: 328 ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSY-KWPVFDACKR 386
           + F I+FL+ A+++   ++   +     +LL G+S  +++ A + ++ +  +P  ++  R
Sbjct: 348 LPFGILFLLQALVYNCYLHPTTVQAVARELL-GRS-NISIDAFRKLFDWIDYPAPESNPR 405

Query: 387 L--------------KLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVEL 432
                          + V E  L   EL+      ++   + R+ I+P +     PE+E 
Sbjct: 406 QFEVDGIIESLDVAERQVHEAQLMRAELFNDN---ENSTRIFRVSISPMRITLHGPELET 462

Query: 433 SNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVR 492
            NR+LRK+   A+ F RV   DE  Q                D+  N       V+ R +
Sbjct: 463 KNRILRKFDGKANFFFRVQLCDENGQ----------------DLLFNPTISLDTVYSRFK 506

Query: 493 SILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FSEDGKTSVLD-IKKWMGRFTD-KNI 547
           SIL  G  + GR++ FL FS S LR  S WF   F  +GK  + + I + +G F   ++ 
Sbjct: 507 SILRKGIAVAGRQYKFLGFSHSSLRAHSLWFSAPFYHEGKLQIPEHIIEQLGDFAPIRSP 566

Query: 548 AKCAARMGQCFSSTYATVEVPPTEVD-PELPDIKRNGYVFSDGIGKITPDLAMEVAQKLK 606
           A+CAAR+GQ F+ T  +V +    V   E+PD++RNG VFSDG+G ++P  A  +   + 
Sbjct: 567 ARCAARIGQAFTETPYSVSLVDNGVQTSEIPDVERNGRVFSDGVGVLSPQAAEAIHDAIP 626

Query: 607 LDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQS-HHTTLEICSW-TRFQ 664
                P C +QIR+AG KG+++    + +G ++ +R SM KF+S     L+IC   ++  
Sbjct: 627 ESKGEPTC-FQIRWAGAKGMLSL-DTELEGSQICIRPSMKKFESPDEANLDICDMASKPI 684

Query: 665 PGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML--VDSDVAFEVLTAACAEQGNTA 722
           P  LNRQ+I +L  ++ P   F  +Q   ++ L  +   V S  +F     A  + G + 
Sbjct: 685 PMMLNRQMIKILEDMDAPPWWFLELQRKEVNHLRAITRTVSSTASF----LAMKDIGESI 740

Query: 723 AI------MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGV 776
            +        + G +   +  LR ++      ++  ++ KARI VP G  L G +DE G 
Sbjct: 741 RLPHLLRQTEAMGVDYHQDLFLRSVVEMALLKEIKLIKHKARIPVPKGITLFGVMDETGF 800

Query: 777 LEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDH 836
           L+ GQ ++          F     R+ E  + Q     VVI ++P LHPGDI++   V  
Sbjct: 801 LQEGQVYV---------SFDTMQGRYHEPPECQK----VVITRSPALHPGDIQLAHHVIP 847

Query: 837 PELH---HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNA 893
           PE H    L +C+VF Q+GDR   +  SG DLDGD+Y + WDE ++    +S+ P +Y  
Sbjct: 848 PEGHPLLELRNCVVFSQRGDRDLPSMLSGGDLDGDIYNIIWDEAIVS-QVRSFSPADYPR 906

Query: 894 AEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAAT 953
                L R V+  D+I+FF   +  + LG I   H++ AD +  G  D +C+ LAEL + 
Sbjct: 907 LPIVELGRKVEADDMIDFFVDFISQDCLGVIATRHMILADLAPQGTRDSDCVKLAELHSQ 966

Query: 954 AVDFPKTGKIVTM 966
           AVDF KTG+ V +
Sbjct: 967 AVDFSKTGRAVNL 979


>gi|58269288|ref|XP_571800.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|58269290|ref|XP_571801.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|58269292|ref|XP_571802.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|57228036|gb|AAW44493.1| conserved hypothetical protein [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57228037|gb|AAW44494.1| conserved hypothetical protein [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57228038|gb|AAW44495.1| conserved hypothetical protein [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1120

 Score =  280 bits (717), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 225/782 (28%), Positives = 373/782 (47%), Gaps = 85/782 (10%)

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
            +V +R +++TPT+    PP+ E SN V R+Y D  D  +RV F DE  +   A+ +    
Sbjct: 367  LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEEDRLFIADNMKL-- 424

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE--- 526
                    ++S +    +  RVR  L  G  + G  F  +A S+SQ ++ + WF +    
Sbjct: 425  --------IDSINPAVGIMARVRRALQFGLIIGGETFYPVASSASQQKEHAMWFINNKVI 476

Query: 527  DGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVF 586
            DG    L+++ WMG   +  +AK AARMG  FS++   +      +  ELPDI+RNG  F
Sbjct: 477  DG----LELRNWMGTVHETVVAKHAARMGLPFSTS--RIVNMKINIGEELPDIERNGRCF 530

Query: 587  SDGIGKITPDLAMEVAQKL--KLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
            +DG G    ++  + A  L  K+ +N  P A Q R  G KGV++ W    +   + LR S
Sbjct: 531  TDGCGIAGREVLNQAALALNEKVGINSQPSAIQFRLGGAKGVLSDWSQLVNEYEIRLRPS 590

Query: 645  MNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKL------- 697
            M KF+S    L +    ++Q  FLNRQ I ++    VP E+   + +  ++ +       
Sbjct: 591  MIKFKSDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRV 650

Query: 698  -NQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREK 756
             N  + ++D   + L A C +     A ++ +GFN    P L  +   I    L  L+ +
Sbjct: 651  WNNAVTEND---QQLIALCND--FPLAQLIKSGFN--ENPLLLDVAAIIECRALQDLKWR 703

Query: 757  ARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVV 816
            AR+ +  G +L+G  DE G L+ G+ F Q  E               +    +++   V+
Sbjct: 704  ARVKLLDGVYLIGIADETGTLKEGEVFCQFQE--------------NDESPPKIVVNEVL 749

Query: 817  IAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE 876
            + + P     D+R   AVD+PEL HL + +VF  +G R   +   G DLDGD Y + WD+
Sbjct: 750  VCRAPAC---DVRRAWAVDNPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYTLIWDQ 806

Query: 877  NLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSE 936
              +  S K + PM+Y A +  ++ + V Q+ + E F ++++N+ LG + N H+  +D   
Sbjct: 807  RFV-QSLKVYDPMDYEAPDPISV-KHVTQKHLNENFVQYILNDVLGQVDNCHLALSDM-- 862

Query: 937  YGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQ-SYKSNKILGR 995
            Y   D  C+ L+E+ +TAVDF KTG+   +   L+PK +PDFM K+  +  Y+S  ILG+
Sbjct: 863  YTPFDPRCLHLSEIHSTAVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYESTGILGK 922

Query: 996  LYRQSKDAYDEDISVSSEVDINPVDIH---YDTDLEV---PESVDFIADAWNQKCSYDGQ 1049
            ++R           V ++   +P D+    Y TD  +   P     +      K SY+  
Sbjct: 923  IFR----------IVQADAHFSPSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYERD 972

Query: 1050 LNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSD 1109
            L   + +Y+V  E E+ +G      +    +   L E L+ +Y+ L    R+  +K+ +D
Sbjct: 973  LQYDMRRYRV-YEPEIPSGIAIRNKRRKRVRDQNLNEPLREAYNLLVNNVRETAQKIVND 1031

Query: 1110 CELLSEDEKNALFERKASA----------WYQVTYHPEWVKKSLDLQEQDSARSVVLLSF 1159
             E  +      +  R   A          W Q     ++ +K  D ++ +  R   L+SF
Sbjct: 1032 FEFKTTLTPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKPLISF 1091

Query: 1160 AW 1161
            AW
Sbjct: 1092 AW 1093


>gi|405121923|gb|AFR96691.1| hypothetical protein CNAG_03466 [Cryptococcus neoformans var. grubii
            H99]
          Length = 1120

 Score =  280 bits (715), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 226/782 (28%), Positives = 371/782 (47%), Gaps = 85/782 (10%)

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
            +V +R +++TPT+    PP+ E SN V R+Y D  D  +RV F DE  +   A+ +    
Sbjct: 367  LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEEDRLFIADYMKL-- 424

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE--- 526
                    ++S +    +  RVR  L  G  + G  F  +A S+SQ ++ + WF +    
Sbjct: 425  --------VDSINPAVGIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMWFINNKVI 476

Query: 527  DGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVF 586
            DG    L+++ WMG   +  +AK AARMG  FS++   +      +  ELPDI+RNG  F
Sbjct: 477  DG----LELRNWMGTVHETVVAKHAARMGLPFSTS--RIVNMKINIGEELPDIERNGRCF 530

Query: 587  SDGIGKITPDLAMEVAQKL--KLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
            +DG G    ++  + A  L  K+ +N  P A Q R  G KGV++ W        + LR S
Sbjct: 531  TDGCGIAGREVLNQAALALNEKVGINAQPSAIQFRLGGAKGVLSDWSQLVSEYEIRLRPS 590

Query: 645  MNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKL------- 697
            M KF+S    L +    ++Q  FLNRQ I ++    VP E+   + +  ++ +       
Sbjct: 591  MIKFRSDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRV 650

Query: 698  -NQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREK 756
             N  + ++D   + L A C +     A ++ +GFN    P L  +   I    L  L+ +
Sbjct: 651  WNNAVTEND---QQLIALCND--FPLAQLIRSGFN--ENPLLLDVAAIIECRALQDLKWR 703

Query: 757  ARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVV 816
            AR+ +  G +L+G  DE G L+ G+ F Q  E               +    +V+   V+
Sbjct: 704  ARVKLSDGVYLIGIADETGTLKEGEVFCQFQE--------------NDDSPPKVVVNEVL 749

Query: 817  IAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE 876
            + + P     D+R   AVD PEL HL + +VF  +G R   +   G DLDGD Y + WD+
Sbjct: 750  VCRAPAC---DVRRAWAVDRPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYTLIWDQ 806

Query: 877  NLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSE 936
              +  S K + PM+Y A +  ++ + V Q+ + E F ++++N+ LG + N H+  +D   
Sbjct: 807  RFV-QSLKVYDPMDYEAPDPISV-KHVTQKHLNENFVQYVLNDVLGQVDNCHLALSDM-- 862

Query: 937  YGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQ-SYKSNKILGR 995
            Y   D  C+ L+E+ +TAVDF KTG+   +   L+PK +PDFM K+  +  Y+S  ILG+
Sbjct: 863  YTPFDPRCLHLSEIHSTAVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYESKGILGK 922

Query: 996  LYRQSKDAYDEDISVSSEVDINPVDIH---YDTDLEV---PESVDFIADAWNQKCSYDGQ 1049
            ++R           V ++   +P D+    Y TD  +   P     +      K SY+  
Sbjct: 923  IFR----------IVQADAHFSPSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYERD 972

Query: 1050 LNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSD 1109
            L   + +Y+V  E E+ +G      +    +   L E L+ +Y+ L    R+  +K+ +D
Sbjct: 973  LQYDMRRYRVY-EPEIPSGIAIRNKRRKRVRDQNLNEPLREAYNILVNNVRETAQKIVND 1031

Query: 1110 CELLSEDEKNALFERKASA----------WYQVTYHPEWVKKSLDLQEQDSARSVVLLSF 1159
             E  +      +  R   A          W Q     ++ +K  D ++ +  R   L+SF
Sbjct: 1032 FEFKTTLTPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKPLISF 1091

Query: 1160 AW 1161
            AW
Sbjct: 1092 AW 1093


>gi|358397216|gb|EHK46591.1| hypothetical protein TRIATDRAFT_317554 [Trichoderma atroviride IMI
            206040]
          Length = 1395

 Score =  279 bits (714), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 235/749 (31%), Positives = 347/749 (46%), Gaps = 105/749 (14%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            + + ++TPT+     P+ E  NRVLR + + +D F+RV F DE  Q              
Sbjct: 556  ILKAMVTPTRITLHGPDAESMNRVLRMFPNHSDYFMRVIFGDEDGQ-------------- 601

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE--DGKT 530
              D+ L S  + T VF+R R IL  G  + GRKF FL FS S LR  SAWF +   D   
Sbjct: 602  --DLALTSNVKNTLVFERYRKILKDGIQVAGRKFEFLGFSHSSLRSHSAWFVAAFVDDSM 659

Query: 531  SVLD---IKKWMGRFTDKNIA-KCAARMGQCFSSTYATVEVPPTEVDPE-LPDIKR--NG 583
            ++ +   I K +G F+D  IA KCAAR+GQ FS T   V +    ++ E + D+K     
Sbjct: 660  NLQNNDTIIKSLGDFSDIRIAAKCAARIGQAFSETPYAVPILKCGINIEYIDDVKTADGK 719

Query: 584  YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRE 643
             VFSDG+G I+ D   EV   L    +   C  Q+R  G KG+++        +    +E
Sbjct: 720  RVFSDGVGTISWDAMEEVWDHLPKASSEATCV-QVRLGGIKGMLSLDSRLNGKVICVRKE 778

Query: 644  SMNKFQSH-HTTLEICSWTRFQP--GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQM 700
            SM KF S   T + IC  T  +P   +LNRQ I +L  +    E F   Q+  L+ L  +
Sbjct: 779  SMMKFPSKDQTEMGICD-TASKPMRTYLNRQTIKILEDMGTNSEWFIDQQNKALNVLRNV 837

Query: 701  LVDSDVAFEVLTAACAEQGNTAAI------MLSAGFNPQTEPHLRGMLTCIRAAQLWGLR 754
               +      L       G TA +      + + G + + E  ++ ++      +L  L+
Sbjct: 838  TTTAANTSTFLKNQMV--GTTAGLPRLIRYLSTIGIDYRRERFMKKVVDHTILRELRLLK 895

Query: 755  EKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGF 814
             KARI V  G  L G +DE G LE GQ ++          F++         K  +  G 
Sbjct: 896  HKARIPVDMGVTLFGVMDETGFLEEGQIYV---------TFNESHDHLQGRVKRSLKDGT 946

Query: 815  VVIAKNPCLHPGDIRILEAVDHPELH---HLYDCLVFPQKGDRPHTNEASGSDLDGDLYF 871
            V++ ++P LHPGDI++      P+ H   +L +C+VF QKG R   ++ SG DLDGDLY 
Sbjct: 947  VLVTRSPALHPGDIQLARMTTPPQGHPLRNLKNCVVFSQKGSRDLPSQLSGGDLDGDLYN 1006

Query: 872  VTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVH 931
            V WD  +IP  K+ + P +Y   +   L R V + DI +FF K M  + LG I N H + 
Sbjct: 1007 VFWDPFVIP--KQYFGPADYPRVKPPELDRAVTRDDIADFFVKFMEADILGIIANRHQML 1064

Query: 932  ADHSEYGALDENCILLAELAATAVDFPKTGKIV---TMPAHLKPKLYPDF---------- 978
            AD+ + G L  +C+ LAE+ +TAVD+ KTG  V    MP    P++ PDF          
Sbjct: 1065 ADYQDEGTLSADCVDLAEMHSTAVDYSKTGIAVRHQDMPK--PPRMRPDFLAPAPPTRLF 1122

Query: 979  --------------------MGKEAYQSYKSNKILGRLYR--QSKDAYDEDISVSSEVDI 1016
                                MG   ++ YKS KILG LYR    K  +  D+    ++  
Sbjct: 1123 DRGEIDHIGDPNENEDDEDGMGMAKHKYYKSLKILGELYRGVDEKKIWANDVQRPVDMSG 1182

Query: 1017 NP----VDIHYDTDL--EVPESVDF-----IADAWNQKCSYDGQLNGLLEQYKVN----- 1060
             P    + IH    L  E   ++D      I  AW  +  Y+  ++  + Q+  N     
Sbjct: 1183 PPLWDQLSIHVRNALWEEGYSTLDIDYRRQIDHAWKIRDLYESSVSNNMWQFSSNPRVPI 1242

Query: 1061 REEELVTGHIWSMPKYNSRKQGELKERLK 1089
             E E   G I +     +R++ +   +LK
Sbjct: 1243 TEVEAFCGSILNPKGSQTRRERDSSIKLK 1271


>gi|321261399|ref|XP_003195419.1| hypothetical protein CGB_G5150C [Cryptococcus gattii WM276]
 gi|317461892|gb|ADV23632.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
          Length = 1120

 Score =  279 bits (713), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 225/782 (28%), Positives = 371/782 (47%), Gaps = 85/782 (10%)

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
            +V +R +++TPT+    PP+ E SN V R+Y D  D  +RV F DE  +   A+ +    
Sbjct: 367  LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEEDRLFIADYMKL-- 424

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE--- 526
                    ++S +    +  RVR  L  G  + G  F  +A S+SQ ++ + WF +    
Sbjct: 425  --------VDSINPAVGIMARVRRALQFGLIIGGETFYPVASSASQQKEHAMWFINNKII 476

Query: 527  DGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVF 586
            DG    L+++ WMG   +  +AK AARMG  FS++   +      +  ELPDI+RNG  F
Sbjct: 477  DG----LELRNWMGTVHETVVAKHAARMGLPFSTS--RIVNMKINIGEELPDIERNGRCF 530

Query: 587  SDGIGKITPDLAMEVAQKL--KLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
            +DG G    ++  + A  L  K  +N  P A Q R  G KGV++ W    +   + LR S
Sbjct: 531  TDGCGIAGREVLNQAALALNEKFGINAQPSAIQFRLGGAKGVLSDWSQLVNEYEIRLRPS 590

Query: 645  MNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKL------- 697
            M KF+S    L +    ++Q  FLNRQ I ++    VP E+   + +  ++ +       
Sbjct: 591  MIKFRSDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFRDRV 650

Query: 698  -NQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREK 756
             N  + ++D   E L A C +     A ++ +GF+    P +  +   I    L  L+ +
Sbjct: 651  WNNAITEND---EQLIALCND--FPLAQLIKSGFS--ENPLVLDVAAIIECRALQDLKWR 703

Query: 757  ARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVV 816
            AR+ +  G +L+G  DE G L+ G+ F Q  E               +    +V+   V+
Sbjct: 704  ARVKLSDGVYLIGIADETGTLKEGEIFCQFQE--------------NDESPPKVVVNEVL 749

Query: 817  IAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE 876
            + + P     D+R   AVD PEL HL + +VF  +G R   +   G DLDGD Y + WD+
Sbjct: 750  VCRAPAC---DVRRAWAVDRPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYTLIWDQ 806

Query: 877  NLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSE 936
              +  S K + PM+Y A +  ++ + V Q+ + E F ++++N+ LG + N H+  +D   
Sbjct: 807  RFV-QSLKVYDPMDYEAPDPISV-KHVTQKHLNENFVQYVLNDVLGQVDNCHLALSDM-- 862

Query: 937  YGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQ-SYKSNKILGR 995
            Y   D  C+ L+E+ +TAVDF KTG+   +   L+PK +PDFM K+  +  Y+S  ILG+
Sbjct: 863  YTPFDPRCLHLSEIHSTAVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYESKGILGK 922

Query: 996  LYRQSKDAYDEDISVSSEVDINPVDIH---YDTD---LEVPESVDFIADAWNQKCSYDGQ 1049
            ++R           V ++   +P D+    Y TD   +  P     +      K SY+  
Sbjct: 923  IFR----------IVQADAHFSPSDLEQMGYPTDPRIIRFPLHESLLDRLKPLKASYERD 972

Query: 1050 LNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSD 1109
            L   + +Y+V  E E+ +G      +    +   L E L+ +Y+ L    R+  +K+ +D
Sbjct: 973  LQYDMRRYRVY-EPEIPSGIAIRNKRRKRVRDQNLNEPLREAYNILVNNVRETAQKIVND 1031

Query: 1110 CELLSEDEKNALFERKASA----------WYQVTYHPEWVKKSLDLQEQDSARSVVLLSF 1159
             E  +      +  R   A          W Q     ++ +K  D ++ +  R   L+SF
Sbjct: 1032 FEFKTTLTPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKPLISF 1091

Query: 1160 AW 1161
            AW
Sbjct: 1092 AW 1093


>gi|310795671|gb|EFQ31132.1| RNA dependent RNA polymerase [Glomerella graminicola M1.001]
          Length = 1313

 Score =  278 bits (712), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 246/834 (29%), Positives = 381/834 (45%), Gaps = 133/834 (15%)

Query: 382  DACKRLKLVQEWLLKDPELYK----GPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVL 437
            D   R  LV E  L+   +Y+    GP   +  V+V + ++TPT+     PE E  NRVL
Sbjct: 407  DEILRHLLVVEKRLRSEHVYRKDALGPATANHHVQVFKAMVTPTRITLHGPEPEPLNRVL 466

Query: 438  RKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSG 497
            R++ D    F+RVTF DE    +       F  P V      S+ Q   +F R R +L+G
Sbjct: 467  RRFPDHTSYFMRVTFCDEDGGDL-------FFNPRV------SYDQ---IFDRYRKVLNG 510

Query: 498  GFYLCGRKFSFLAFSSSQLRDCSAWF----FSEDGKTSVL-DIKKWMGRFTDKNI-AKCA 551
            G  + GR + FL FS S LR  SAWF        GK  +  +I K +G F    I AKCA
Sbjct: 511  GIPIAGRVYQFLGFSHSSLRSHSAWFSAPFVDSTGKLQLYANIIKSLGDFDHIQIPAKCA 570

Query: 552  ARMGQCFSSTYATVEVPPTEVDP-ELPDIKRNG----YVFSDGIGKITPDLAMEVAQKLK 606
            AR+GQ FS T A + +    +   ++PD+K +      VFSDG+G I+ +    V  +L 
Sbjct: 571  ARIGQAFSETPAFINLSEHRIRHWDIPDVKSHDGKIQRVFSDGVGTISQEAIELVWPRLP 630

Query: 607  LDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLR-ESMNKFQSHHT-TLEIC-SWTRF 663
                 P C  QIR+ G KG+++   ++  G  + +R ESM KF S     LEIC + ++ 
Sbjct: 631  QRSLIPTC-LQIRWGGVKGMLSL-ESRLSGRSICIRRESMEKFPSTDVQNLEICDAASKP 688

Query: 664  QPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAA 723
                LNRQ+I ++  L V    F  +Q + L +L  +  D+      L      QG  +A
Sbjct: 689  LKLVLNRQMIKIMEDLGVDKNFFLRLQKNELDRLRAVTADAYNTGTFLHL----QGVGSA 744

Query: 724  IMLSA--------GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELG 775
              L          G + + +  LR ++      +L  L+ KARI VP G  L G +DE G
Sbjct: 745  FFLPTFIKSLEKYGIDYRRDDFLRAVVESTVLRELRLLKHKARIPVPQGATLFGVMDETG 804

Query: 776  VLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVD 835
             L+ G+ ++         C+  + S      +  +  G V++ ++P LHPGDI++     
Sbjct: 805  FLKEGEVYV---------CYDTYKSPGKAPTERSLRDGRVLVTRSPALHPGDIQLANMRT 855

Query: 836  HPELH---HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPME 890
             P  H   +L +C+ F Q G R   ++ SG DLDGDLY + WD+  +P     W     +
Sbjct: 856  PPPGHPLRNLRNCVAFSQHGQRDLPSQLSGGDLDGDLYNIIWDKQAMP----RWICKAAD 911

Query: 891  YNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAEL 950
            Y     + L RPV + D+  +F   M ++ LG I   H++ +D  + G +  NC+ LAEL
Sbjct: 912  YPRVTPEPLGRPVTRDDMANWFVDFMKSDVLGLIATRHLILSDQDQEGTMGRNCLKLAEL 971

Query: 951  AATAVDFPKTGKIVTMPAHLK-PKLYPDFMGKEA-------------------------- 983
             +TAVDF KTG  V      K P+  PDF+                              
Sbjct: 972  HSTAVDFSKTGIAVEQREIPKAPRFRPDFLAPAPPAQLYDRTHIDFIDEDEAVDDDEDAQ 1031

Query: 984  ---YQSYKSNKILGRLYR--QSKDAYDEDIS-VSSEVDINPVD----------------- 1020
               ++ YKS  ILG+LYR    K  +D+DI+ V S+   +  D                 
Sbjct: 1032 GPNHKYYKSENILGQLYRNVNEKQIWDQDINRVVSKAGPSVWDQFLGLMERKIGEYGKGR 1091

Query: 1021 IHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNR-----EEELVTGHIWSMPK 1075
            I ++T  E  +S+         +  ++  ++G + QY  N      E E+  G I++   
Sbjct: 1092 IRWETKREQAQSL---------RDVFEDTVSGFMVQYSDNHMKQLTEVEVFCGSIFNKTG 1142

Query: 1076 YNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLS---EDEKNALFERKA 1126
              +R+Q +  ++LK  +  L     Q   +   + E  S    D+ ++ F+++A
Sbjct: 1143 SQTRRQKDNSKKLKQDFDRLADHMTQQMRRKVRNVEGSSTAVNDDLDSTFDKEA 1196


>gi|453081039|gb|EMF09089.1| RdRP-domain-containing protein [Mycosphaerella populorum SO2202]
          Length = 1253

 Score =  278 bits (712), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 210/648 (32%), Positives = 310/648 (47%), Gaps = 83/648 (12%)

Query: 401  YKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTM 460
            Y+  K+   I  + R+V+TPT      PE E +NRVLR +    D F+R+ F DE     
Sbjct: 426  YELAKRYSHINLIHRVVVTPTGIRLEGPEPEPTNRVLRLHAQNTDNFVRMVFQDEDGGR- 484

Query: 461  NANVLSYFIAPIVRDITLNSFSQKTRVF-KRVRSILSGGFYLCGRKFSFLAFSSSQLRDC 519
                           +  +  S   R++ +R + IL  G  + G+ F+FL FS S LR  
Sbjct: 485  ---------------VKFDWSSDYQRIYHERFQGILDKGITIAGKSFTFLGFSHSSLRSQ 529

Query: 520  SAWFFSEDGKTSVL----DIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDP 574
            S WF +   K   L     + K +G F+  +  AKCAAR+GQ F+ T  +V +   +V  
Sbjct: 530  SCWFMAPFVKAGSLMFAEKVIKELGNFSGIRTPAKCAARIGQNFTDTNTSVRLQRDQVF- 588

Query: 575  ELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKG 634
            EL ++ RNG+ F+DG G I+  L  EV +         P A QIR+ G KG+VA    + 
Sbjct: 589  ELAEVVRNGHDFADGAGTISKGLLEEVWKVYGTKRMLKPTALQIRFQGAKGMVA-QDTRL 647

Query: 635  DGIRMSLRESMNKFQS---HHTTLEICSWT-RFQPGFLNRQIITLLSTLNVPDEMFWSMQ 690
             G R+ LR +M K+ +    H  LEIC    R  P  LNR  I +L  L VP++ F ++Q
Sbjct: 648  PGKRLMLRNNMRKYLTGADDHMDLEICGAAFRPLPMILNRGFIKILEDLAVPEQSFINLQ 707

Query: 691  DSMLSKLNQM----LVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIR 746
            +  + +L  M    +    +  EV T+  +   +    +   G +   +  L   +    
Sbjct: 708  NKAMERLRMMTQSAINTGTLLDEVHTSKASGLPSLIRYLGQIGLDYHHDDFLYAAVELAV 767

Query: 747  AAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETK 806
             ++L  ++ + RI VP G  L G  DE G L+ G+ F+ ++E            R     
Sbjct: 768  ISELRDIKHRGRIPVPKGVTLFGVPDETGYLKEGEIFV-ITE------------RGPTGG 814

Query: 807  KLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH---HLYDCLVFPQKGDRPHTNEASGS 863
            K  +++  V+I ++P LHPGDI++ +AVD P  +    L + +VF + G R   ++ SG 
Sbjct: 815  KEILVRDKVIITRSPALHPGDIQLAKAVDVPPGNSNRQLSNVVVFSKWGQRDLPSKLSGG 874

Query: 864  DLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGT 923
            DLDGDLY V WDE LIP     + P +Y       L R V ++D+ +FF   M N+ LG 
Sbjct: 875  DLDGDLYNVIWDETLIP--WMIYAPAQYPRVPPVELPRDVTRKDMSDFFVTFMENDKLGL 932

Query: 924  ICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKP-KLYPDFMG-- 980
            I N H+  AD    G LD +CI LA LA+TAVD+ KTG    M    +P K  PD+M   
Sbjct: 933  IANQHLQLADQRPMGTLDPDCIKLAALASTAVDYSKTGIPANMGTAPRPAKFKPDYMAPN 992

Query: 981  --------------------KEAYQS----------YKSNKILGRLYR 998
                                 EA+ +          Y+S K+LG LYR
Sbjct: 993  PRVVFSQEGLLDLEDEDFAPDEAFDTIDAERRPMRYYESQKVLGILYR 1040


>gi|308474534|ref|XP_003099488.1| hypothetical protein CRE_01169 [Caenorhabditis remanei]
 gi|308266677|gb|EFP10630.1| hypothetical protein CRE_01169 [Caenorhabditis remanei]
          Length = 1637

 Score =  278 bits (711), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 236/864 (27%), Positives = 385/864 (44%), Gaps = 149/864 (17%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            VR+++ TPT+   + PE  + NRVLR+Y     R LR+ F D+  Q M  N  S  +   
Sbjct: 491  VRKIIFTPTRVVYVAPETLMGNRVLRRYDRDGCRVLRIMFRDDDNQKMRTNKTSTLLETT 550

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE------ 526
            V                     L  G  + G+ F +L  S+SQ+RD  A+F  +      
Sbjct: 551  VH------------------RYLRDGITVAGKNFGYLGSSNSQMRDSGAYFMEKYSSAQC 592

Query: 527  -------------DGKTSVLDIKKWMGRF-TDKNIAKCAARMGQCFS-STYATVEVPPTE 571
                         D    +   +K +GRF T  NI K  AR+GQCF+ S  + V +    
Sbjct: 593  REYEEKYKLKPPIDFNPKIQSARKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLERCT 652

Query: 572  VDPEL-----PDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGV 626
                       ++KR+ Y FSDG+G ++   A  V++ + L    P C +Q R+ G KGV
Sbjct: 653  YITTFDLTGGKNVKRDEYTFSDGVGLMSHLFAKMVSEVMDLGKGVPSC-FQFRFRGMKGV 711

Query: 627  VACWPAKGD-------------------GIRMSLRESMNKFQSHH---TTLEICSWTRFQ 664
            +A  P   +                   G+    R S  KF S       +EI  ++   
Sbjct: 712  IAVEPLLDNIRLWCVENNVPEVSEETSWGLSCVFRPSQIKFISKRHPRDQVEIVKYSAPV 771

Query: 665  PGFLNRQIITLLSTLNVPDEM---------FWSMQDSMLSKLNQMLVDSDVAFEVLTAAC 715
            P  LN+  I +L  ++    +            + D  + +  Q +VD       L    
Sbjct: 772  PVSLNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLQFAQQMVDETFCRNRL-KEL 830

Query: 716  AEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDE 773
              + +   +  + GF   +EP  R ++       +     K +I +PA  GR ++G +DE
Sbjct: 831  PRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFLITRQLRKEQIPIPADLGRSMLGVVDE 890

Query: 774  LGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEA 833
             G L+ GQ F+Q+++        K  +R       QV+ G V++ KNPC+  GD+RI EA
Sbjct: 891  TGRLQYGQIFVQLTKNLALKIPPKTAAR-------QVLTGTVLLTKNPCIVAGDVRIYEA 943

Query: 834  VDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNA 893
            VD PELHH+ D +VFPQ G RPH +E +GSDLDGD Y + WD+ L+    K+  P ++ +
Sbjct: 944  VDIPELHHMNDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLL--LDKNEDPFDFTS 1001

Query: 894  AEAKTLTRPVDQRDII-EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAA 952
             + K+  +  +   ++ +F+  ++  +++GTI N+H+ ++D  +YG     C+ LA+   
Sbjct: 1002 EKQKSSFKEEEIDGLMRDFYVTYLKLDSVGTISNSHLHNSD--QYGLNSRVCMDLAKKNC 1059

Query: 953  TAVDFPKTG--------------KIVTMPAHLKPKLYPDF-MGKEAYQSYKSNKILGRLY 997
             AVDF K+G              +   M    + +  PD+ MG +    Y S ++ G+L+
Sbjct: 1060 QAVDFTKSGIPPEELEKKWRKDDETGEMIPPERAERVPDYHMGNDHSPMYVSPRLCGKLF 1119

Query: 998  RQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQY 1057
            R+ K A D+ + +S E D   ++I  D  + +    +++  A      Y+ QL  ++E Y
Sbjct: 1120 REFK-AIDDVVKISEERD-EQIEISIDPTMTIDGYDEYMQSAREDLARYNAQLRSVMENY 1177

Query: 1058 KVNR--------EEELVTGHIWSMPKYNSRKQGE------LKERLKHSYSALRKEFRQ-V 1102
             + +        E E+ +G I  M    S K  +        + ++   S L K++R+  
Sbjct: 1178 GIKKINDRYFQTEGEIFSGCIVDMRNRISDKDQDDMSFYNTNQLIETKVSNLFKKYREHF 1237

Query: 1103 FEKMDSDCELLSE-----DEKNAL----------FERKASAWYQVTYHPEWVKKSLDLQE 1147
            F++ D   +  +E     +E N L            RKA AWY+  Y           +E
Sbjct: 1238 FDEFDGGWQTNTECTRNGNETNILQRQCRAPTNKMMRKAVAWYKACY-----------EE 1286

Query: 1148 QDSARSVVLLSFAWIANDYLARIK 1171
                R    LSFAW+A D LA +K
Sbjct: 1287 ARVTRENKKLSFAWLAYDVLASVK 1310


>gi|380493792|emb|CCF33621.1| RNA dependent RNA polymerase, partial [Colletotrichum higginsianum]
          Length = 1278

 Score =  278 bits (711), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 236/794 (29%), Positives = 363/794 (45%), Gaps = 125/794 (15%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            V + ++TPT+     PE E  NR+LR++ +    F+RVTF DE    +       F  P 
Sbjct: 443  VFKAMVTPTRITLHGPEPEPMNRILRRFPNQTSYFIRVTFCDEDGGDL-------FFNPR 495

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FSEDGK 529
            V      S+ Q   +F R R +L+GG  + GR + FL FS S LR  SAWF   F +DG 
Sbjct: 496  V------SYDQ---IFDRYREVLNGGIPIAGRIYQFLGFSHSSLRSHSAWFSAPFVDDGG 546

Query: 530  TSVL--DIKKWMGRFTDKNI-AKCAARMGQCFSSTYATVEVPPTEV-DPELPDIKRNG-- 583
               L  +I K +G F    I AKCAAR+GQ FS T   +++    +    +PD+K     
Sbjct: 547  KLQLYGNIIKALGDFEHIEIPAKCAARIGQAFSETPTFIKLAENRIRHSNIPDVKSQDGD 606

Query: 584  --YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSL 641
               VFSDG+G I+ D+   V  +L      P C  QIR+ G KG+++             
Sbjct: 607  IERVFSDGVGTISQDVLELVWPRLPRGSLIPTC-LQIRWGGVKGMLSLDSRLMGRTICVR 665

Query: 642  RESMNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQ 699
            RESM KF S+    LEIC + +R     LNRQ+I ++  L V   +F  +Q   + +L  
Sbjct: 666  RESMEKFPSNDVENLEICDAASRPLKLVLNRQMIKIMEDLGVDSNLFLQLQKKEVDRLRA 725

Query: 700  MLVDSDVAFEVLTAACAEQGNTAAIMLSA--------GFNPQTEPHLRGMLTCIRAAQLW 751
            +  D+      L      QG  +   L +        G + + +  LR ++      +L 
Sbjct: 726  VTADAYNTGTFLHL----QGVGSTFFLPSLIKSLKNYGIDYRRDSFLRAVVESTVLQELR 781

Query: 752  GLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVI 811
             L+ KARI VP G  L G +DE G L  G+ ++         C+  +        K  + 
Sbjct: 782  LLKHKARIPVPEGATLFGIMDETGFLREGEVYV---------CYDTYKRPGKSPMKNSLR 832

Query: 812  KGFVVIAKNPCLHPGDIRILEAVDHPELH---HLYDCLVFPQKGDRPHTNEASGSDLDGD 868
             G V++ ++P LHPGDI+ +     P  H   +L +C+ F Q+G R   +  SG DLDGD
Sbjct: 833  DGPVLVTRSPALHPGDIQYVNMRTPPPGHPLRNLRNCIAFSQRGHRDLPSMLSGGDLDGD 892

Query: 869  LYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAH 928
            LY + WD+   P  K+++   +Y     + L RPV+++D+  +F   M ++ LG I   H
Sbjct: 893  LYNIIWDKAAAP--KRTFKAADYPRVTPEPLGRPVERKDMANWFVDFMKSDVLGLIATRH 950

Query: 929  VVHADHSEYGALDENCILLAELAATAVDFPKTGKIV------------------TMPAHL 970
            ++ +D    G L ++C+ LA L +TAVDF KTG  V                    PA L
Sbjct: 951  LILSDQDPVGTLGQDCLKLAGLHSTAVDFSKTGVAVEPRDIPKAPQFRPDFLAPAPPAQL 1010

Query: 971  KPKLYPDFMGKEA-------------YQSYKSNKILGRLYRQ--SKDAYDEDIS-VSSEV 1014
              +   +F+G++              ++ Y+S KILG LYR    K  +DEDIS V S+ 
Sbjct: 1011 YDRTQINFLGRDEGVDDDDEDAAGPNHKYYRSEKILGVLYRNVDEKQIWDEDISRVVSKT 1070

Query: 1015 -----------------DINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQY 1057
                             + +   I ++T LE  +S+         +  Y+  + G + QY
Sbjct: 1071 GPSVWAQFVGLMQRKIKEYSAGLIRWETRLEEAKSL---------RNVYEDTVGGFMTQY 1121

Query: 1058 -----KVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCEL 1112
                 K   E E+  G I++     +R+Q +  ++LK  +  L +   Q   +   + E+
Sbjct: 1122 SDSHMKQLTEVEVFCGSIFNKSGSQTRRQKDNSKKLKQEFDRLAEHMTQHMRRKARNTEV 1181

Query: 1113 LS----EDEKNALF 1122
                   D  N LF
Sbjct: 1182 QGAEAYNDIHNTLF 1195


>gi|210148496|gb|ACJ09171.1| RNA-dependent RNA polymerase [Cryptococcus neoformans var. grubii]
          Length = 1120

 Score =  277 bits (708), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 224/782 (28%), Positives = 370/782 (47%), Gaps = 85/782 (10%)

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
            +V +R +++TPT+    PP+ E SN V R+Y D  D  +RV F DE  +   A+ +    
Sbjct: 367  LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEEDRLFIADYMKL-- 424

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE--- 526
                    ++S +    +  RVR  L  G  + G  F  +A S+SQ ++ + WF +    
Sbjct: 425  --------VDSINPAVGIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMWFINNKVI 476

Query: 527  DGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVF 586
            DG    L+++ WMG   +  +AK AARMG  FS++   +      +  ELPDI+RNG  F
Sbjct: 477  DG----LELRNWMGTVHETVVAKHAARMGLPFSTS--RIVNMKINIGEELPDIERNGRCF 530

Query: 587  SDGIGKITPDLAMEVAQKL--KLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
            +DG G    ++  + A  L  K+ +N  P A Q R  G KGV++ W        + LR S
Sbjct: 531  TDGCGIAGREVLNQAALALNEKVGINAQPSAIQFRLGGAKGVLSDWSQLVSEYEIRLRPS 590

Query: 645  MNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKL------- 697
            M KF+S    L +    ++Q  FLNRQ I ++    VP E+   + +  ++ +       
Sbjct: 591  MIKFRSDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRV 650

Query: 698  -NQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREK 756
             N  + ++D   + L A C +     A ++ +GFN    P L  +   I    L  L+ +
Sbjct: 651  WNNAVTEND---QQLIALCND--FPLAQLIRSGFN--ENPLLLDVAAIIECRALQDLKWR 703

Query: 757  ARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVV 816
            AR+ +  G +L+G  DE G L+ G+ F Q  E               +    +V+   V+
Sbjct: 704  ARVKLSDGVYLIGIADETGTLKEGEVFCQFQE--------------NDDSPPKVVVNEVL 749

Query: 817  IAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE 876
            + + P     D+R   AVD PEL HL + +VF  +G R   +   G DLDGD Y + WD+
Sbjct: 750  VCRAPAC---DVRRAWAVDRPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYTLIWDQ 806

Query: 877  NLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSE 936
              +  S K + PM+Y A +  ++ + V Q+ + E F ++++N+ LG + N H+  +D   
Sbjct: 807  RFV-QSLKVYDPMDYEAPDPISV-KHVTQKHLNENFVQYVLNDVLGQVDNCHLALSDM-- 862

Query: 937  YGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQ-SYKSNKILGR 995
            Y   D  C+ L+E+ + +VDF KTG+   +   L+PK +PDFM K+  +  Y+S  ILG+
Sbjct: 863  YTPFDPRCLHLSEIHSVSVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYESKGILGK 922

Query: 996  LYRQSKDAYDEDISVSSEVDINPVDIH---YDTDLEV---PESVDFIADAWNQKCSYDGQ 1049
            ++R           V ++   +P D+    Y TD  +   P     +      K SY+  
Sbjct: 923  IFR----------IVQADAHFSPSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYERD 972

Query: 1050 LNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSD 1109
            L   + +Y+V  E E+ +G      +    +   L E L+ +Y+ L    R+  +K+ +D
Sbjct: 973  LQYDMRRYRVY-EPEIPSGIAIRNKRRKRVRDQNLNEPLREAYNILVNNVRETAQKIVND 1031

Query: 1110 CELLSEDEKNALFERKASA----------WYQVTYHPEWVKKSLDLQEQDSARSVVLLSF 1159
             E  +      +  R   A          W Q     ++ +K  D ++ +  R   L+SF
Sbjct: 1032 FEFKTTLTPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKPLISF 1091

Query: 1160 AW 1161
            AW
Sbjct: 1092 AW 1093


>gi|268561564|ref|XP_002646475.1| Hypothetical protein CBG19448 [Caenorhabditis briggsae]
          Length = 1606

 Score =  277 bits (708), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 236/861 (27%), Positives = 395/861 (45%), Gaps = 145/861 (16%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            VR+++ TPT+   + PE  + NRVLRK+     R +R+TF D+    M AN     +   
Sbjct: 466  VRKVIFTPTRVIYISPETIMGNRVLRKFDKDGTRVIRITFRDDNNNQMRANDTGDLL--- 522

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTS- 531
              ++T N F             L  G  +  R+F FL  S+SQ+RD  A+F ++  ++  
Sbjct: 523  --EMTANKF-------------LGEGIRIANREFGFLGCSNSQMRDNGAYFMAKYSQSQL 567

Query: 532  -------------------VLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYAT-VEVPPT 570
                               +++++K +G+F   +NI K  ARMGQCF+ +  T VE+  +
Sbjct: 568  EKFLRTRPNEAQLKAFKPRIMEVRKHLGKFDKLENIPKLMARMGQCFTQSRLTGVELNRS 627

Query: 571  EVDPELPDIKRNG------YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCK 624
            +    +PD +         Y FSDG+G ++   A +VA  +++  N  P ++QIR+ G K
Sbjct: 628  DY-IRIPDFEGGKNLAGKPYTFSDGVGIMSYRFAQKVAHAMQMG-NSVPSSFQIRFRGMK 685

Query: 625  GVVAC---------WPAKGD--------GIRMSLRESMNKFQSHHT---TLEICSWTRFQ 664
            G++A          W    D         ++ + R S  KF++       +E+  ++   
Sbjct: 686  GMIAIDPYMDLIHQWNVSYDIPYQVPNLELKCAFRPSQIKFEAKSLPGDQIEMVKYSAPV 745

Query: 665  PGFLNRQIITLLSTLN----------VPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAA 714
               LN+  I +L  ++          V   +   M   +LS   QM  + +         
Sbjct: 746  MVALNKPFINILDQVSEMQSLECHKRVTGRVEELMDRQILSFARQM--NDETYCRNRLKE 803

Query: 715  CAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLD 772
               + +   +    GF   +EP  R ++       +     K +I +P   GR ++G +D
Sbjct: 804  FPRRIDIDFLRPMWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIQIPKELGRSMLGVVD 863

Query: 773  ELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETK--KLQVIKGFVVIAKNPCLHPGDIRI 830
            E G L+ GQ F+Q ++    N   K   R         +++ G V++ KNPC+  GD+R+
Sbjct: 864  ETGQLQYGQIFVQYTQ----NAAKKLPMRGPNMTVPDAKIVTGTVLVTKNPCIVTGDVRV 919

Query: 831  LEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPME 890
             EAVD PELHH+ D +VFPQ G RPH +E +GSDLDGD Y + WD+ L+    ++  P +
Sbjct: 920  FEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLL--LDRNEDPFD 977

Query: 891  YNAAEAKTLTRPVDQRDII--EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLA 948
            ++  +   +    DQ D +  +F+ K++  +++GTI N H+ ++D  +YG     C+ LA
Sbjct: 978  FSVEKKDPVPFDFDQIDDLMRDFYVKYLKLDSVGTISNNHLHNSD--QYGLTSTVCMNLA 1035

Query: 949  ELAATAVDFPKT-----------GKIVTMPAHLKP---KLYPDF-MGKEAYQSYKSNKIL 993
            +  + AVDF K+           GK      ++ P   +  PD+ M  E    Y S ++ 
Sbjct: 1036 KKNSQAVDFTKSGDPPAPLTREWGKDPETGENIPPEGAERIPDYHMANERVPVYVSPRLC 1095

Query: 994  GRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGL 1053
            GRL+R+ + A D  I +S E D    ++  D  L +     ++  A     +Y+GQL  +
Sbjct: 1096 GRLFREFQ-AIDNVIKISEERD-EQFEVQIDETLMIQGYEAYMEGARKDLANYNGQLRAI 1153

Query: 1054 LEQYKVNREEELVTGHIWSM-PKYNSRKQGE----------LKERLKHSYSALRKEFRQV 1102
            +E Y +  E E+++  I  M  + + R Q +          ++ R    +   R+ F + 
Sbjct: 1154 METYGIRTEGEIMSDCILDMRNRISDRDQDDKMSFYNTNQMIETRTTALFCRFRENFFKE 1213

Query: 1103 FEKMDSDCELL--SEDEKNALFER----------KASAWYQVTYHPEWVKKSLDLQEQDS 1150
            F    + C  +  S D  N L  R          KA AWY+  Y  E+ +         S
Sbjct: 1214 FHGFQAACTEIQNSNDSTNPLNFRCDGPSVPMLQKAVAWYRACY--EFAQ---------S 1262

Query: 1151 ARSVVLLSFAWIANDYLARIK 1171
            +R    LSFAWI  D LA++K
Sbjct: 1263 SRETRKLSFAWIVFDVLAKVK 1283


>gi|209978362|gb|ACJ04634.1| RNA-dependent RNA polymerase [Cryptococcus neoformans var. grubii]
          Length = 1120

 Score =  277 bits (708), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 224/782 (28%), Positives = 370/782 (47%), Gaps = 85/782 (10%)

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
            +V +R +++TPT+    PP+ E SN V R+Y D  D  +RV F DE  +   A+ +    
Sbjct: 367  LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEEDRLFIADYMKL-- 424

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE--- 526
                    ++S +    +  RVR  L  G  + G  F  +A S+SQ ++ + WF +    
Sbjct: 425  --------VDSINPAVGIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMWFINNKVI 476

Query: 527  DGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVF 586
            DG    L+++ WMG   +  +AK AARMG  FS++   +      +  ELPDI+RNG  F
Sbjct: 477  DG----LELRNWMGTVHETVVAKHAARMGLPFSTS--RIVNMKINIGEELPDIERNGRCF 530

Query: 587  SDGIGKITPDLAMEVAQKL--KLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
            +DG G    ++  + A  L  K+ +N  P A Q R  G KGV++ W        + LR S
Sbjct: 531  TDGCGIAGREVLNQAALALNEKVGINAQPSAIQFRLGGAKGVLSDWSQLVSEYEIRLRPS 590

Query: 645  MNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKL------- 697
            M KF+S    L +    ++Q  FLNRQ I ++    VP E+   + +  ++ +       
Sbjct: 591  MIKFRSDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRV 650

Query: 698  -NQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREK 756
             N  + ++D   + L A C +     A ++ +GFN    P L  +   I    L  L+ +
Sbjct: 651  WNNAVTEND---QQLIALCND--FPLAQLIRSGFN--ENPLLLDVAAIIECRALQDLKWR 703

Query: 757  ARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVV 816
            AR+ +  G +L+G  DE G L+ G+ F Q  E               +    +V+   V+
Sbjct: 704  ARVKLSDGVYLIGIADETGTLKEGEVFCQFQE--------------NDDSPPKVVVNEVL 749

Query: 817  IAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE 876
            + + P     D+R   AVD PEL HL + +VF  +G R   +   G DLDGD Y + WD+
Sbjct: 750  VCRAPAC---DVRRAWAVDRPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYTLIWDQ 806

Query: 877  NLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSE 936
              +  S K + PM+Y A +  ++ + V Q+ + E F ++++N+ LG + N H+  +D   
Sbjct: 807  RFV-QSLKVYDPMDYEAPDPISV-KHVTQKHLNENFVQYVLNDVLGQVDNCHLALSDM-- 862

Query: 937  YGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQ-SYKSNKILGR 995
            Y   D  C+ L+E+ + +VDF KTG+   +   L+PK +PDFM K+  +  Y+S  ILG+
Sbjct: 863  YTPFDPRCLHLSEIHSVSVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYESKGILGK 922

Query: 996  LYRQSKDAYDEDISVSSEVDINPVDIH---YDTDLEV---PESVDFIADAWNQKCSYDGQ 1049
            ++R           V ++   +P D+    Y TD  +   P     +      K SY+  
Sbjct: 923  IFR----------IVQADAHFSPSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYERD 972

Query: 1050 LNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSD 1109
            L   + +Y+V  E E+ +G      +    +   L E L+ +Y+ L    R+  +K+ +D
Sbjct: 973  LQYDMRRYRVY-EPEIPSGIAIRNKRRKRVRDQNLNEPLREAYNILVNNVRETAQKIVND 1031

Query: 1110 CELLSEDEKNALFERKASA----------WYQVTYHPEWVKKSLDLQEQDSARSVVLLSF 1159
             E  +      +  R   A          W Q     ++ +K  D ++ +  R   L+SF
Sbjct: 1032 FEFKTTLTPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKPLISF 1091

Query: 1160 AW 1161
            AW
Sbjct: 1092 AW 1093


>gi|341880675|gb|EGT36610.1| hypothetical protein CAEBREN_29614 [Caenorhabditis brenneri]
          Length = 1669

 Score =  275 bits (704), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 243/888 (27%), Positives = 396/888 (44%), Gaps = 163/888 (18%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            VR+++ TPT+   + PE  + NRVLR+Y     R LR+TF D+  Q M  N  S  +   
Sbjct: 506  VRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTSTLLE-- 563

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTS- 531
                            K V + L  G  + GR F +L  S+SQ+RD  A+F  +   +  
Sbjct: 564  ----------------KTVNNYLHSGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQC 607

Query: 532  ------------------VLDIKKWMGRF-TDKNIAKCAARMGQCFSS-----------T 561
                              +   +K +GRF T  NI K  AR+GQCF+            T
Sbjct: 608  REYEAIHHVKPPITYNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLDRCT 667

Query: 562  YATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIR-- 619
            Y T+            +IKR+ Y FSDG+G ++   A  V+Q +      P C +Q+   
Sbjct: 668  YMTMYDLTGG-----KNIKRDEYTFSDGVGMMSLRFAQMVSQVMDFGKGVPSC-FQVFLN 721

Query: 620  --------YAGCKGVVACWPAK----------GDGIRMSLRESMNKFQSHH---TTLEIC 658
                    ++    ++  W  +            G+    R S  KF S       +EI 
Sbjct: 722  PIAPKTPIFSPLLDMIRKWSLEFALEKPSDDVAWGLNCVFRPSQIKFISKRHPRDQVEIV 781

Query: 659  SWTRFQPGFLNRQIITLLSTLNVPDEM---------FWSMQDSMLSKLNQMLVDSDVAFE 709
             ++   P  LN+  I +L  ++    +            + D  +    Q +VD      
Sbjct: 782  KYSSPVPVSLNKPFINILDQVSEMQSLECHRRVTNRIEELLDRQMLLFAQQMVDETFCRN 841

Query: 710  VLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWL 767
             L      + +   +  + GF   +EP  R ++       +     K +I +P   GR +
Sbjct: 842  RL-KELPRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIPIPQDLGRSM 900

Query: 768  MGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGD 827
            +G +DE G L+ GQ F+Q ++        K+ +R       QV+ G V++ KNPC+  GD
Sbjct: 901  LGVVDETGRLQYGQIFVQYTKNLALKLPPKNAAR-------QVLTGTVLLTKNPCIVAGD 953

Query: 828  IRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWP 887
            +RI EAVD PELHH+ D +VFPQ G RPH +E +GSDLDGD Y + WD+ L+    K+  
Sbjct: 954  VRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLL--LDKNED 1011

Query: 888  PMEYNAAEAKTLTRPVDQRDII-EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCIL 946
            P ++ + + K+  +  +  D++ EF+ K++  +++GTI N+H+ ++D  +YG     C+ 
Sbjct: 1012 PFDFTSEKQKSSFKEEEIDDLMREFYVKYLKLDSVGTISNSHLHNSD--QYGLNARVCMD 1069

Query: 947  LAELAATAVDFPKTGKIVTMPAHLKPK-----------------LYPDF-MGKEAYQSYK 988
            LA+    AVDF K+G+    P  L+ K                   PD+ MG +    Y 
Sbjct: 1070 LAKKNCQAVDFTKSGQ---PPDELERKWRKDEETGEMIPPERCERVPDYHMGNDHTPMYV 1126

Query: 989  SNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDG 1048
            S ++ G+L+R+ K A D+ + +S E D   V+I  D ++ +     ++  A ++   Y+ 
Sbjct: 1127 SPRLCGKLFREFK-AIDDVLKISEERD-EQVEISIDENIMMEGYESYMHSARDELSRYNA 1184

Query: 1049 Q-----LNGLLEQYKVNREEELVTGHIWSMPK------------YNSRKQGELKERLKHS 1091
            Q     L+ ++E Y +  E E+ +G I  M              YN+ +  E K  + + 
Sbjct: 1185 QLRVSFLDSMMENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQMIETK--VTNL 1242

Query: 1092 YSALRKEFRQVFE-----------KMDSDCELLSEDEK--NALFERKASAWYQVTYHPEW 1138
            +   R+ F + FE           ++ SD  +L    +       RKA AWY+  Y  + 
Sbjct: 1243 FKKYREHFFEEFEGGWEANTESSSRIGSDANILQRQCRAPTQKMMRKAVAWYRACYGTKN 1302

Query: 1139 VKKSLD-----LQEQDSARSVVLLSFAWIANDYLARIKIRCREMANID 1181
             +K +      L+E    R    LSFAWIA D +A +K + R +A+ D
Sbjct: 1303 PQKCIHNLIKFLEEARITRENKKLSFAWIAFDVIAMVK-QTRSLASDD 1349


>gi|297737619|emb|CBI26820.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score =  275 bits (704), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 155/382 (40%), Positives = 221/382 (57%), Gaps = 22/382 (5%)

Query: 790  FLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFP 849
            F+ N    H   F       +++G +V+AKNPCLHPGD+R+L AV+ P LHH+ DC+VFP
Sbjct: 535  FVPNGSGSHHDNF-------ILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFP 587

Query: 850  QKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDII 909
            QKG RPH NE SGSDLDGD+YFV WD +LIPP + +  PM+Y  A  K L   V   ++ 
Sbjct: 588  QKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQIN--PMDYTPAPTKVLDHDVMIEEVE 645

Query: 910  EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAH 969
            E+F  ++VN++LG I NAH V AD     A  + C  LA+L + AVDFPKTG    +P +
Sbjct: 646  EYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRN 705

Query: 970  LKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEV 1029
            L+ K YPDFM K    +Y+S  ++G+L+R+ KD    + ++ S    +     YD D+EV
Sbjct: 706  LRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRS-FTRDVARQSYDPDMEV 764

Query: 1030 PESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLK 1089
                D+++DA+  K  YD +L  L++ Y +  E E+++G I  M K   R++    E + 
Sbjct: 765  VGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKD--AEAIG 822

Query: 1090 HSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQD 1149
             +  +LRKE R  F KM S+ +  ++D        KASAWY VTYHP++     +  ++D
Sbjct: 823  LAVKSLRKEARTWFNKMGSETDSEADD-----VYAKASAWYHVTYHPDYWGCYNEGMDRD 877

Query: 1150 SARSVVLLSFAWIANDYLARIK 1171
                   LSF W   D L   K
Sbjct: 878  H-----FLSFPWCVYDKLIHTK 894



 Score =  173 bits (438), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 141/456 (30%), Positives = 222/456 (48%), Gaps = 79/456 (17%)

Query: 218 ILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSR 277
           +L+QL  +P+++    + D+ VL  +     DD W+R  DFTPS  IG+  S+ + +   
Sbjct: 133 LLIQLLGAPQIY----EKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQ--SFALCLELP 186

Query: 278 HRGKLSKV---ITYLGERRVQV-----DSLSRPITIREEPDFEVPMSDPFFCIHYEEGIS 329
           +  +L        Y  E   +       S S  + +       VP+  P         + 
Sbjct: 187 YGSQLPNFRENFAYYKENDGKFILESGSSYSHNLHL-------VPILGP----PQGSSLP 235

Query: 330 FEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVA--ALKHIYSYKWPVFDACKRL 387
           F+I+F +N ++  G ++   L  SFF L+  +   ++    AL+ +Y  K   ++  + L
Sbjct: 236 FQILFKINTLVQNGCLSGPTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWL 295

Query: 388 KLVQEWLLKDPELYKGPKQID-DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADR 446
                  +K P        +D  +V VRR+ ITP                          
Sbjct: 296 SEQYRTYVKKPVAGSPAISLDTGLVYVRRVQITPY------------------------- 330

Query: 447 FLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKF 506
                   E L+ +++ V+S           ++   ++T V++R+ SIL  G  +  +KF
Sbjct: 331 --------ENLEKIHSTVIS---------PRMSKEGRRTGVYRRILSILQNGIVIGDKKF 373

Query: 507 SFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATV 565
            FLAFSSSQLRD SAW F+     +  +I+ WMG F+  +N+AK AAR+GQ FSS+  T+
Sbjct: 374 DFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETL 433

Query: 566 EVPPTEVDPELPDIK----RNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYA 621
           +V   E++  +PDI+    R  YVFSDGIGKI+P LA  VA K     +  P A+QIRY 
Sbjct: 434 KVAKDEIE-NIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCK-SSTPSAFQIRYG 491

Query: 622 GCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEI 657
           G KGVVA  P      ++SLR+SM K++S +T L++
Sbjct: 492 GYKGVVAVDPTSSR--KLSLRKSMFKYESDNTNLDL 525


>gi|429963046|gb|ELA42590.1| hypothetical protein VICG_00342 [Vittaforma corneae ATCC 50505]
          Length = 2092

 Score =  275 bits (704), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 205/653 (31%), Positives = 308/653 (47%), Gaps = 115/653 (17%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V +R  ++TP            SNRVL  +    D+F +V   +E       N    F+A
Sbjct: 834  VMIRIAILTPLSVIFNYETTSESNRVLNNFD--PDKFCKVVIREE-------NGKDRFMA 884

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS----E 526
             + ++           V+   R ++  GF +  RK+ FLA ++SQL+   +WF +    +
Sbjct: 885  DLAKN--------TDGVYDYFRRVMLNGFVIGLRKYFFLAMTTSQLKIHGSWFITPYEHD 936

Query: 527  DGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYV 585
            D       IK W+G F   KNI K A R+G   SST  T    P     E+ DI++N Y 
Sbjct: 937  DMVIGADYIKSWIGNFHKIKNIGKYAIRIGLALSSTTPTY---PFNDFVEVDDIQKNSYC 993

Query: 586  FSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP-------------- 631
            F+DGIG IT   A  ++  L L     P A+QIR+ G KGV+A  P              
Sbjct: 994  FTDGIGLITKKWAHNISNILGLGF--IPSAFQIRFGGYKGVIAVHPWMDEQKNFEEWLTV 1051

Query: 632  ----------------------AKGDGIR----------------MSLRESMNKFQSHHT 653
                                  +  D +                 + +R+SMNKF S + 
Sbjct: 1052 NSNIVRGYGKYSNINSLLYSNTSSNDAVNSFHQIVASFKQLGTPDLIVRKSMNKFDSSYR 1111

Query: 654  TLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQD----SMLSKLNQMLVDSDVAFE 709
            TLEI + ++    +LNRQII +L  L VP ++F  +QD    +MLSKL+Q          
Sbjct: 1112 TLEIIAVSKSSSFYLNRQIILILEGLGVPIQIFIDLQDKYIQNMLSKLSQ---------- 1161

Query: 710  VLTAACAEQGNTAAIMLSAGFNPQTE-PHLRGMLTCIRAAQLWGLREKARIFVPAGRWLM 768
              T    +  NT         N  T+ P  R + + I +     L  K++I +  GR  +
Sbjct: 1162 DFTLFIKKYVNTTM-------NISTDLPFYRKLQSPILSKVFEELNTKSKILIGQGRSAI 1214

Query: 769  GCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDI 828
            G LDELG+LE  Q F    +        +      +     V   + ++AKNP +HPGDI
Sbjct: 1215 GVLDELGILEEDQIFCMFQKDV-----DESMENLKDYGSYIVPNCYCIVAKNPVMHPGDI 1269

Query: 829  RILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPP 888
            R+++ VD P+LH+L + +VF +KG RP  N+ SGSDLDGD++ V+W + LIP  K ++ P
Sbjct: 1270 RVVKCVDAPKLHYLKNVIVFSKKGSRPIFNQCSGSDLDGDIFLVSWCKALIP--KATFKP 1327

Query: 889  MEYNAAEAKTLTR-PVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILL 947
              YN      L +  V   DI+ F+ +HM    LG I ++++  +D  ++   +E  + L
Sbjct: 1328 --YNYINTCALIKDKVLLSDIVNFYIRHMKFYQLGQIAHSYLAMSD--KFSIFNEKSLRL 1383

Query: 948  AELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQS 1000
            +++    +D+ KTG I ++P  L P  YPDFM  E   SY S K +G LYR+S
Sbjct: 1384 SDIFNKNIDYVKTGHITSIPEDLIPTEYPDFM--ERSPSYYSTKAIGHLYRRS 1434


>gi|389747663|gb|EIM88841.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
          Length = 890

 Score =  275 bits (703), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 189/582 (32%), Positives = 290/582 (49%), Gaps = 58/582 (9%)

Query: 413 VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQ---TMNANVLSYFI 469
           +RR ++ PT+   +PP++E SN +LR +KD ADRFLRV F+ E      T   N +    
Sbjct: 347 IRRCLVAPTRLILMPPQMETSNNLLRTFKDHADRFLRVQFIQEESDLTVTRETNEID--- 403

Query: 470 APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGK 529
                    ++      +F RVR  L  G ++ GRK+ FL F  SQL+    W  +E   
Sbjct: 404 ---------DALQGGRGLFARVRRTLKYGIHVAGRKYVFLCFGESQLKSKGCWMIAEKEG 454

Query: 530 TSVLDIKKWMGRF-TDKNIAKCAARMGQCFSSTYATVEVPPTEVDPE-LPDIKRNG---- 583
            SV  I KWMG    ++ IAK AAR G C S++ A     P ++  E + DI R      
Sbjct: 455 FSVQGILKWMGDLDKERVIAKHAARQGLCLSTSRAI----PLDLQVEFIHDITRTDSQGK 510

Query: 584 -YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYA-GCKGVVACWP---AKGDGIR 638
            YVF+DG+G  + ++A   A+ + ++ +    A Q+RY  G KGV++       +G+   
Sbjct: 511 EYVFTDGMGDCSQEVANVCARFMGIEGDV--SAVQVRYGTGIKGVISVSEDPLMRGNPYT 568

Query: 639 MSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN 698
           + +R+SM KF+S +  L       + P  LNRQ+I L+ +L V  +    +  +  +K+ 
Sbjct: 569 LRVRDSMVKFKSSNPGLNALKVATYSPATLNRQVILLMESLGVSPDTLLDIFKTEKTKIQ 628

Query: 699 QMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKAR 758
            +  ++    E L+ A A     A   L +GF  + +P +  ++  ++   L  L+ KA 
Sbjct: 629 GL--EASFGQERLSRASAFPLEKA---LDSGF--KDDPLVASIVRLVKCRLLSDLKWKAW 681

Query: 759 IFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIA 818
           I +P   +LMG +D  G L+ G+ F Q+  P                    V+ G     
Sbjct: 682 IEIPKSAFLMGVVDPTGTLQEGEIFCQIQPP---------------NSSPSVVVGDCTAY 726

Query: 819 KNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENL 878
           +NPCLHPGD+R ++AVD+  + HL + +VF   G RP  N   G D+DGD + + WD+  
Sbjct: 727 RNPCLHPGDVRSVKAVDYMSMRHLRNVIVFSTLGHRPLPNMMGGGDVDGDFFSLIWDDRF 786

Query: 879 IPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYG 938
              S+  + PM+Y          PV      +FF   + N+ LG +CN H+  AD  E+G
Sbjct: 787 RLGSE--YEPMDYTGPTPVKSILPVTVDQTKKFFVDFIRNDLLGAVCNTHMALAD--EHG 842

Query: 939 ALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMG 980
              ++C+ LA LA+ AVDF KTG  V+     K   YPDFMG
Sbjct: 843 PYHDDCLKLAALASQAVDFVKTGVPVSHNDIPKVDEYPDFMG 884


>gi|452838162|gb|EME40103.1| hypothetical protein DOTSEDRAFT_138071 [Dothistroma septosporum
            NZE10]
          Length = 947

 Score =  275 bits (702), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 233/766 (30%), Positives = 359/766 (46%), Gaps = 98/766 (12%)

Query: 401  YKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTM 460
            Y+  K+   I  V +++ITP   Y   P+ E +NRVLR+Y    D F+RV F DE    M
Sbjct: 127  YELSKRYAHINLVHKIIITPAGTYLEGPDAEPTNRVLRRYHHSTDHFVRVIFQDEDRSPM 186

Query: 461  NANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCS 520
              +  +                Q      R + +L G   +CGR FSFL FS S LR  S
Sbjct: 187  RHDPRT---------------DQSQIYHMRFKGVLDGSVLICGRAFSFLGFSHSSLRSQS 231

Query: 521  AWF----FSEDGKTSVLD-IKKWMGRFTDKNI-AKCAARMGQCFSSTYATVEVPPTEVDP 574
             WF     S+ G     + + K +G F+   + AKCAAR+GQ F+ T A+V++ P EV  
Sbjct: 232  CWFSAPMVSKQGSLVFAEQVIKELGDFSKIRVPAKCAARIGQNFTDTNASVKLRPEEVF- 290

Query: 575  ELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKG 634
            ELP+++RNG  FSDG+G I+  L   V ++        P A QIR+ G KG+VA   ++ 
Sbjct: 291  ELPNVERNGRDFSDGVGTISERLLQSVHRRYGSKKLLKPTALQIRFQGSKGMVA-LDSRL 349

Query: 635  DGIRMSLRESMNKFQSHHT-TLEICSWT-RFQPGFLNRQIITLLSTLNVPDEMFWSMQDS 692
             G R+ +R +M K+++  T  LEIC    R  P  LNR  I ++  L  P   F  +Q++
Sbjct: 350  PGKRLMIRPNMKKYETAATWDLEICGAAFRPLPMVLNRPFIKVMEDLGTPISTFMDLQNA 409

Query: 693  MLSKLNQMLVD--SDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGMLTCIRAA 748
             +  L +M     +   F   + AC     +  I  +   G +   +  +  ++     A
Sbjct: 410  AMVHLQRMTASCINTAIFLDDSEACRATRMSELIRYLGQIGLDYHHDHFMYSVVEMAVVA 469

Query: 749  QLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKL 808
            +L  ++ K RI V  G  L G +DE G L   + ++ V+E              AE  K 
Sbjct: 470  KLRDIKYKGRIPVEQGVTLYGIMDETGYLGPREIYV-VTEK-------------AEGGKK 515

Query: 809  QVIKGFVVIAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDL 865
             V+   +++ ++P LHPGD++++ AVD P+   L  L + +VF + GDR   ++  G DL
Sbjct: 516  VVVANDIIVTRSPALHPGDMQVVNAVDVPQTSPLKRLSNVVVFSKHGDRDLPSQLGGGDL 575

Query: 866  DGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTIC 925
            DGDLY + WD  L P   +++ P +Y    A  L R V ++D+ +FF   M ++ LG IC
Sbjct: 576  DGDLYNIIWDPKLRP--MRTFQPADYPRVSAVQLDRDVVRKDMSDFFVTFMESDVLGMIC 633

Query: 926  NAHVVHADHSEYGALDENCILLAELAATAVDFPKTG---KIVTMPAHLKPKLYPDFMG-- 980
              H+  AD    G LD +CI LA +A+TAVDF KTG    I  +P + + K  PDFM   
Sbjct: 634  TTHLQLADQRSAGVLDPDCIKLAGMASTAVDFSKTGIPVNIKDIPRYTRVK--PDFMAPS 691

Query: 981  ------------------------------KEAYQSYKSNKILGRLYRQSKDA------Y 1004
                                          +   + Y+S K LG LYR   +        
Sbjct: 692  PRVVVSDGGFLDFEEDDDGEDDAFEGLDTERRRTRFYRSEKALGHLYRAIDEGKFLHNMQ 751

Query: 1005 DEDISVSS---EVDINPVDIHYDTDLEVPESVDF---IADAWNQKCSYDGQLNGLLEQYK 1058
            +++  ++S   + D+  V + Y         V +   +  A N + SY+  L  LL  Y+
Sbjct: 752  NQNRQINSRPLQDDLLSVLLAYVKKWATQYGVLYDHHLTLAANIRSSYEDSLLSLLYDYE 811

Query: 1059 VNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFE 1104
             +    L    I+S  +   R+ G   + L+   + +R+ F  V E
Sbjct: 812  PSPHAPLFEAEIFS-GQILGRQGGPQGKPLREQSTQMRERFETVAE 856


>gi|380095764|emb|CCC05810.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1230

 Score =  273 bits (699), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 197/635 (31%), Positives = 310/635 (48%), Gaps = 79/635 (12%)

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
            + ++ R ++TPT+     PE+E  NR+LRK+ +  D FLRV F +E  Q           
Sbjct: 411  LTKIYRALVTPTRIELHGPELEAMNRILRKFPEHQDHFLRVQFGEEDGQ----------- 459

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGK 529
                 D+  NS      +++R + +L+ G  + GR + FL FS S LR  S W  +    
Sbjct: 460  -----DLFFNSTVSMDVIYQRFKDVLTKGISVGGRVYRFLGFSHSSLRAHSLWLSAPFIH 514

Query: 530  TSVL----DIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDP-ELPDIKRNG 583
              VL    +I + +G F + ++ A+ AAR+GQ FS T  +V +    +      D+KR  
Sbjct: 515  NGVLRISENIIEGLGDFRNIRSPARRAARIGQAFSETPYSVSLHDHGIAVIRQNDVKRGK 574

Query: 584  YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRE 643
             VFSDG+GKI+   A+EV  +        P   Q+R+AG KG++A   A+  G ++ +R+
Sbjct: 575  RVFSDGVGKISQG-ALEVIHREIPASKGYPNCLQVRWAGAKGMLAL-DARLPGRQICIRD 632

Query: 644  SMNKFQSH-HTTLEICSW-TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
            SM KF+SH    LEIC   ++  P  LNRQ+I +L  +  P + F  +Q+  L +L  + 
Sbjct: 633  SMEKFRSHDEEHLEICDMASKPIPLMLNRQMIKILEDMGAPAKWFVRLQEKELQRLRAIT 692

Query: 702  VDSDVAFEVLTAACA----EQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKA 757
                     L   C       G     +     + + +  LRG++  +   +L  L+ KA
Sbjct: 693  NSVHNVAAFLKLQCVGDSVHLGQFLKDVHKMNIDYRKDQFLRGIVESVVLRELRLLKHKA 752

Query: 758  RIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVI 817
            RI VP G  L G +DE G+L  G+ ++          +     RF +        G VV+
Sbjct: 753  RIPVPRGITLFGVMDETGLLREGEVYV---------TYETVDDRFKDPP----TSGSVVV 799

Query: 818  AKNPCLHPGDIRILEAV----DHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVT 873
             ++P LHPGDI+I + V     HP L  L +C+VF Q G+R   ++ SG DLDGD + V 
Sbjct: 800  TRSPALHPGDIQIAQNVIPPAGHP-LRELKNCIVFSQNGERDLPSQLSGGDLDGDTFNVI 858

Query: 874  WDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHAD 933
            WD+ ++    +++   +Y     + L R ++ +D+ +FF + M  ++LG I   H++ AD
Sbjct: 859  WDQKIVS-KLETFAAADYPRVTPRELNREIESKDMADFFVEFMKADHLGVIAVRHMILAD 917

Query: 934  HSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY-PDFMGKEA--------- 983
              + G  DE+C+ LAEL + AVDF K+G  V +    +P  Y PDF+             
Sbjct: 918  VRDQGTGDEDCLKLAELHSQAVDFSKSGIHVDITELPRPPRYRPDFLVNRPDVKIHDKSK 977

Query: 984  --------------------YQSYKSNKILGRLYR 998
                                Y+ Y S K+LG+LYR
Sbjct: 978  IDLEEQYLKPDNDDDDDTPRYKYYASKKLLGKLYR 1012


>gi|400595821|gb|EJP63611.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
          Length = 1328

 Score =  273 bits (699), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 216/647 (33%), Positives = 306/647 (47%), Gaps = 100/647 (15%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            V + ++TPT+     P+ E  NRVLR + D  D FLRVTF DE                 
Sbjct: 481  VLKAMVTPTRVILGGPDPESKNRVLRMFHDRTDYFLRVTFTDEDGS-------------- 526

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS-----ED 527
              D+  N       V+   RS++  G  + GR+FSFL FS S LR  SAWF +       
Sbjct: 527  --DLNFNHRVSNDYVYDHYRSVMKQGIEVAGRRFSFLGFSHSSLRSHSAWFMAPFVDNRM 584

Query: 528  GKTSVLDIKKWMGRFTDKNI-AKCAARMGQCFSST-YATVEVPPTEVDPELPDIKR---N 582
            G+     +   +G F +  I AKCAAR+GQ FS T YA      + V   + D++     
Sbjct: 585  GRQDYATVLNSLGDFREIRIPAKCAARIGQAFSETPYAVSLRGSSIVISYIEDVRSYVDE 644

Query: 583  GYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLR 642
              VFSDG+G I+     E    L L++  P C  QIR AG KG+++  P +  G ++ +R
Sbjct: 645  SRVFSDGVGTISQGALEEFWDVLPLNLGSPTCV-QIRVAGIKGMLSLDP-RLLGKQICIR 702

Query: 643  -ESMNKFQSHH-TTLEICS-WTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQ 699
             ESM KF S     + IC    R     LNRQ+I +L  +      F +MQ   L  L  
Sbjct: 703  AESMMKFPSRDFVEIGICEVAARPLRLVLNRQMIKILEDMGTNRTWFRAMQAKALETLRG 762

Query: 700  MLVDSDVAFEVLTAACAEQGNTAAI--------MLSAGFNPQTEPHLRGMLTCIRAAQLW 751
            +   +      L      QG  ++I        M + G + + +P L+G++  +   +L 
Sbjct: 763  VTATAANTCTFLEY----QGVGSSIRLPRFIRRMHAHGIDYRGDPFLKGVVEYVVLRELR 818

Query: 752  GLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV- 810
             L+ KARI +  G  L G +DE G L+ G+ +I             H  R A  +K  + 
Sbjct: 819  LLKHKARIPIEKGVTLFGVMDETGFLKEGEIYI-------------HYDRRAPGRKDGIE 865

Query: 811  ---IKGFVVIAKNPCLHPGDIRILEAVDHPELH---HLYDCLVFPQKGDRPHTNEASGSD 864
               + G VV+ ++P LHPGDI++ + V  PE H    L +C+VF Q+G R   ++ SG D
Sbjct: 866  DSLVDGPVVVTRSPALHPGDIQLAKMVTPPEKHPLRALRNCIVFSQRGGRDLPSQLSGGD 925

Query: 865  LDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTI 924
            LDGD Y V WD   +P  +  + P  Y   + + L R V + DI  FF + M  + LG I
Sbjct: 926  LDGDKYNVIWDGGALP--RSVFAPASYPRNKPQPLDRDVTRDDIASFFIEFMRTDVLGLI 983

Query: 925  CNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG---KIVTMPAHLKPKLYPDFM-- 979
             N H+++AD    GA D  CI LAEL +TAVD+ KTG    I  +P   +PK  PDFM  
Sbjct: 984  ANRHLMYADIQPAGADDPTCIKLAELHSTAVDYSKTGIPPLINEIPR--QPKTKPDFMAP 1041

Query: 980  ----------------------------GKEAYQSYKSNKILGRLYR 998
                                        G+  Y+ +KS KILG+LYR
Sbjct: 1042 APPTTTYDLGDVAFVEVDEEEDEGDDGFGRPKYRYHKSEKILGQLYR 1088


>gi|400598650|gb|EJP66359.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
          Length = 1260

 Score =  273 bits (697), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 232/757 (30%), Positives = 337/757 (44%), Gaps = 126/757 (16%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            V + ++ PT+ +   P+ E  NRVLR + D  D FLRVTF DE  Q              
Sbjct: 443  VFKAMVAPTRIFLQGPDPESRNRVLRMFPDHGDYFLRVTFCDEDGQ-------------- 488

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS----EDG 528
              D++ N       +++R R +L  G  + GR+FSFL FS S LR  S WF +     DG
Sbjct: 489  --DLSFNPRVSNDAIYERYRQVLIKGIRIAGRQFSFLGFSHSSLRSHSTWFMAPFVGADG 546

Query: 529  KTSVLD-IKKWMGRFTDKNI-AKCAARMGQCFSSTYATVEVPPTEVDPE-LPDIKR--NG 583
            +    D I   +G F+D  I AKCAAR+GQ FS T   V++  + +    +PD+K     
Sbjct: 547  QRQSRDTILAALGDFSDIRIPAKCAARIGQAFSETPYAVDLFKSGIGVRWIPDVKSADGE 606

Query: 584  YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRE 643
             VFSDG+G ++     E  + L        C +QIR+AG KG++         +    +E
Sbjct: 607  RVFSDGVGTLSRAAVEEFCKALPGRSTTATC-FQIRWAGVKGLLVLDTRLQGKVICVRKE 665

Query: 644  SMNKFQSHH-TTLEICSW-TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
            SM KF S     L IC   +R     LNRQ+I +L  +   D  F ++Q           
Sbjct: 666  SMMKFPSQDLQELGICDLASRPLRLVLNRQVIKILEDMGTRDSWFLALQHD--------- 716

Query: 702  VDSDVAFEVLTAACAEQGNTA----------AIMLSA--------GFNPQTEPHLRGMLT 743
                 A E L A  A   NT+          AI LS+          + + +  L+ ++ 
Sbjct: 717  -----ALEFLRAVTATALNTSTFLQYQDIGSAIGLSSFIKQLDKMDIDYRRDAFLKSVVE 771

Query: 744  CIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFA 803
             +   +L  L+ KARI V  G  L G +DE G L+  Q ++            K G R  
Sbjct: 772  HVVLRELRLLKHKARIPVHKGVTLFGVMDETGFLQENQVYVTYDA-----TRGKSGERLD 826

Query: 804  ETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH---HLYDCLVFPQKGDRPHTNEA 860
             T    +  G +++ ++P LHPGDI+ ++ V  PE H    L +C+VF QKG R   ++ 
Sbjct: 827  TT----LTDGPIIVTRSPALHPGDIQYVQMVTPPESHPLRSLRNCIVFSQKGSRDLPSQL 882

Query: 861  SGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVN 918
            SG DLDGDLY + WD    P ++  W   P +Y      +L RPV ++DI +FF   M +
Sbjct: 883  SGGDLDGDLYNIIWD----PRARPQWTFAPADYTRVVPPSLDRPVTRQDIADFFVDFMKS 938

Query: 919  ENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT---MPAHLKPKLY 975
            + LG I   H + AD  + G  D  CI LAE+ +TAVD+ KTG  V    +P    P+  
Sbjct: 939  DILGLIAIRHQIMADVQDLGTQDGECIRLAEMHSTAVDYSKTGIAVNWRDLPR--APRSR 996

Query: 976  PDF----------------------------MGKEAYQSYKSNKILGRLYRQSKDA--YD 1005
            PDF                            M     + ++S KILGRLYR+  +   + 
Sbjct: 997  PDFLAPAPPLHLYDLGQIGHIAEEDDDDGNDMALAKPRYHRSEKILGRLYREIDEGKIWS 1056

Query: 1006 EDISVSSEVDINPVDIHYDTDLEV--------PESVDFIADAWNQKCSYDGQLNGLLEQY 1057
            EDI      D   V +     ++          +       AWN +  Y+  + G +  +
Sbjct: 1057 EDIHRPIPTDGPSVWVQLLGRVQYELNSWNIGTDYARHYEQAWNIRTLYEDAITGSMWHF 1116

Query: 1058 KVN-----REEELVTGHIWSMPKYNSRKQGELKERLK 1089
              N      E E+  G I +     SR+Q E   RLK
Sbjct: 1117 SDNPRSPVSEAEVFCGSILNKRGVQSRQQREASIRLK 1153


>gi|67524519|ref|XP_660321.1| hypothetical protein AN2717.2 [Aspergillus nidulans FGSC A4]
 gi|40743829|gb|EAA63015.1| hypothetical protein AN2717.2 [Aspergillus nidulans FGSC A4]
 gi|259486372|tpe|CBF84157.1| TPA: RNA-directed RNA polymerase (Sad-1), putative (AFU_orthologue;
            AFUA_3G06790) [Aspergillus nidulans FGSC A4]
          Length = 1203

 Score =  273 bits (697), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 235/861 (27%), Positives = 391/861 (45%), Gaps = 139/861 (16%)

Query: 248  DDDPWIRTTDFTPSG----AIGRCNSYR---ISISSRHRGKLSKV-------ITYLGERR 293
            D    IR T  +P G     +G+C  Y+   +S SS  R ++ KV       I Y  +  
Sbjct: 203  DGHSRIRLT--SPGGPQAAVVGQCLVYQFQVVSSSSNLRARMGKVAEYDLSVINYEFKTV 260

Query: 294  VQVDSLSRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQH---QL 350
               DS    +T+         + D          + F I+F + A+++ G +  +   +L
Sbjct: 261  HNFDSWQSQLTL---------LRDRLGEYTRAGTLPFGILFQLQALVYNGYLPPNIVLRL 311

Query: 351  SDSFFDLLRGQS----REVNVAALKHIYSY-KWPV-------FDACKRLKLVQEWLLKDP 398
            +     + + +     R ++V ++K +++   WP        F   + L+++      D 
Sbjct: 312  TRKLASITKTRKVQGRRPISVNSMKRLFNLIDWPSPFGDPEEFSIKRLLEVITG---NDK 368

Query: 399  ELYKGPKQIDDIVE-------VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVT 451
            +L +G  + + + +       + R+V+TP++     PE E  NR+LR++ +  + F+RV 
Sbjct: 369  DLGEGASEAEALFQPAPHLAHIHRVVVTPSRITLHGPETEPLNRILRRFPNHHEYFIRVQ 428

Query: 452  FMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAF 511
            F DE  +                DI  N     + +F R +++ + GF + GR ++FL F
Sbjct: 429  FCDENGE----------------DIYFNPRINNSLIFARFKNVFANGFQIAGRTYTFLGF 472

Query: 512  SSSQLRDCSAWF----FSEDGK-TSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATV 565
            S S LR  SAWF      +DG   S   I K +GRF++  + A+CAAR+GQ FS T   V
Sbjct: 473  SHSSLRSRSAWFSAPFIDDDGSLQSYFTIIKAIGRFSEITSPARCAARIGQAFSETPFAV 532

Query: 566  EVPPTEVDP-ELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCK 624
             +    +    +PD++  G VFSDG+G I+   A+++   +    N  P  +QIR  G K
Sbjct: 533  NLKENGIRVLRIPDVQVGGRVFSDGVGTISAK-AVDIIHGVLPPRNGAPTCFQIRLGGAK 591

Query: 625  GVVACWPAKGDGIRMSLRESMNKFQSH-HTTLEIC-SWTRFQPGFLNRQIITLLSTLNVP 682
            G+++  P +  G ++ +R SM KFQ+     +EIC S ++  P FLNRQ+I +L  + V 
Sbjct: 592  GMLSLDP-RLRGSKICIRPSMTKFQTDDQVNVEICGSGSKPIPLFLNRQVIKILEDMGVD 650

Query: 683  DEMFWSMQDSMLSKLNQMLVDSDVAFEVL----TAACAEQGNTAAIMLSAGFNPQTEPHL 738
             E F ++Q+  + +L +    +      +     A C +      +  +   + +  P L
Sbjct: 651  REWFMTLQELRIEQLRKATATTKNTATFVKGQSVADCVKLYRLFLLFHNLKLDYKKIPFL 710

Query: 739  RGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKH 798
            R ++  +   +L  L+ KARI V  G  L G +DE G L   + F+            + 
Sbjct: 711  RAVVEAMVLRELRLLKHKARIPVHKGITLYGVMDETGFLNENEVFVTY----------QA 760

Query: 799  GSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLY---DCLVFPQKGDRP 855
              R A   +       +++ ++P LH GDI+    V  P+ H L    +C+VF QKG R 
Sbjct: 761  MDRLAAPPQ----NCRLLVTRSPALHNGDIQYPYNVVPPKGHPLQQQRNCIVFSQKGTRD 816

Query: 856  HTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKH 915
              ++ SG DLDGDLY + WD    P  K+ + P  Y       + R V++ D+  FF + 
Sbjct: 817  LPSQLSGGDLDGDLYNIIWDPAAAP--KRVFTPANYPRNPPLDIKRVVEREDMANFFVEF 874

Query: 916  MVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY 975
            M ++ LG I   H++ AD  E G    +C  LA+L +TAVDF KTG    +P  LK   +
Sbjct: 875  MQSDRLGVIATKHMILADQMELGTSHSDCKKLAQLHSTAVDFSKTG----IPVRLKEMPF 930

Query: 976  -----PDFMG------------------------------KEAYQSYKSNKILGRLYRQS 1000
                 PDF+                                  ++ Y+S KILG+LYR  
Sbjct: 931  VNRSRPDFLAPGPLAKIHDRQNIQLEARYVHPYPDDDIDFSPVHKYYRSEKILGKLYRAI 990

Query: 1001 KDAYDEDISVSSEVDINPVDI 1021
             +       + + V+ NP  +
Sbjct: 991  NEHEIWTKDIHTTVNSNPTAV 1011


>gi|308476834|ref|XP_003100632.1| CRE-RRF-1 protein [Caenorhabditis remanei]
 gi|308264650|gb|EFP08603.1| CRE-RRF-1 protein [Caenorhabditis remanei]
          Length = 1680

 Score =  272 bits (695), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 249/895 (27%), Positives = 404/895 (45%), Gaps = 167/895 (18%)

Query: 408  DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSY 467
            D    VR++V TPT+   + PE  + NRVLR++     R +RVTF D+    + A     
Sbjct: 510  DGFQRVRKIVFTPTRVIYIAPETIMGNRVLRRFDKDGTRVIRVTFRDDSNGRLRA----- 564

Query: 468  FIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSED 527
                        S + +  + K      S G  +  R + FL  S+SQ+RD  A+F  + 
Sbjct: 565  ------------STTGEELIDKTAMKFFSEGVKVANRDYGFLGCSNSQMRDNGAYFMEKS 612

Query: 528  G-------------------KTSVLDIKKWMGRF-TDKNIAKCAARMGQCFSSTYAT-VE 566
                                +  +L++++ +GRF T +N+ K  AR+GQCF+ +  T VE
Sbjct: 613  TFGQRQRLLKNNPNANLIGFQPKILEVRRHLGRFETIENVPKMMARLGQCFTQSRLTGVE 672

Query: 567  VPP----TEVDPELPDIK---RNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIR 619
            +      T  D E    K      Y +SDG+G ++   A  +A+ +   ++ P C  QIR
Sbjct: 673  LERSDYCTTFDYEGAKTKPIVGKCYTYSDGVGIMSYGFAQRLARSMNFGISVPSC-LQIR 731

Query: 620  YAGCKGVVACWP--------AKGDGI----------RMSLRESMNKFQSHHTTLEICSWT 661
            + G KGV+A  P        A+ +GI          +   R S  KF +     +     
Sbjct: 732  FRGMKGVIAIDPFYDEVSEWAQANGIQSYDVPNLDLKCQFRPSQIKFPAKSIPGDQIEMV 791

Query: 662  RFQPGFL---NRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ 718
            +F    L   N+  I +L    V +         +  ++ +++    V+F       A+Q
Sbjct: 792  KFSSPVLVALNKPFINILD--QVSEMQSIECHRRVTGRIEELMDRQIVSF-------AKQ 842

Query: 719  GNTAAIMLSA-----------------GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761
             N      +                  GF    EP  R ++       +     K +I +
Sbjct: 843  MNDELYCRNKLKEFPRRIDIDFLKRMWGFTLCNEPFFRSLIKASIKFSITKQLRKEQIQI 902

Query: 762  PA--GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAK 819
            P   GR ++G +DE G L+ GQ F+Q +         +   +  + +  QV+ G V++ K
Sbjct: 903  PKELGRSMLGIVDETGRLQYGQIFVQYTRNSNEKLPPRSNMQHMKVQGSQVVTGTVLLTK 962

Query: 820  NPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
            NPC+  GD+RI EAVD PELHHL D +VFPQ G RPH +E +GSDLDGD Y V WD+ L+
Sbjct: 963  NPCIVTGDVRIFEAVDIPELHHLCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQQLL 1022

Query: 880  PPSKKSWPPMEYNAAEAKTLTRPVDQRDII-----EFFAKHMVNENLGTICNAHVVHADH 934
                K+  P ++   E K +  P D R++I     EF+ K++  +++GTI N H+ ++D 
Sbjct: 1023 --LDKNEAPFDF-TVEKKEM--PYD-REMIDQLMHEFYVKYLKLDSVGTISNNHLHNSD- 1075

Query: 935  SEYGALDENCILLAELAATAVDF-----------------PKTGKIVTMPAHLKPKLYPD 977
             +YG     C+ LA+    AVDF                 P+TG+ V  P  L  ++ PD
Sbjct: 1076 -QYGLNSRVCMDLAKKNCQAVDFTKSGEPPAPLTKKWARDPETGEAV--PPELAERV-PD 1131

Query: 978  F-MGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFI 1036
            + +G +    Y + ++ GRL+R+ + A D+ I +S E +    +I  D  +++    +++
Sbjct: 1132 YHVGNDNAPVYVTPRLCGRLFREFQ-AIDDVIRISEEREEQ-YEIEIDESIKMEGYENYL 1189

Query: 1037 ADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGE----------LKE 1086
              A  +  +Y+GQL  ++E Y +  E E+++G I  M    S K  +          ++ 
Sbjct: 1190 TCAEKELANYNGQLRSIMETYGIQSEGEIMSGCILEMRNRISDKDQDDMSFFNTNQMIET 1249

Query: 1087 RLKHSYSALRKEFRQVFEKMDSDCELLSE--DEKNALFER----------KASAWYQVTY 1134
            R+       RK F + F    + C  L    D  N+L  R          KA+AWY+  Y
Sbjct: 1250 RMTSLVCEFRKRFFEEFGGYLAVCTQLPNTFDANNSLTYRCEMPSELMMQKATAWYRACY 1309

Query: 1135 HPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK---IRCREMANIDTSKPV 1186
              ++ +KS         R    LSF WIA D LA++K   +   E  +I++S P+
Sbjct: 1310 --KFAQKS---------RETRKLSFGWIAYDVLAKVKEHHLLKSEEIHINSSNPM 1353


>gi|33331167|gb|AAQ10792.1| RNA-directed RNA polymerase-like protein [Branchiostoma floridae]
          Length = 1005

 Score =  272 bits (695), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 169/429 (39%), Positives = 232/429 (54%), Gaps = 44/429 (10%)

Query: 755  EKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQ----V 810
            E   + V +GR +MG +DE G L+ GQ FIQ S                E  K Q    V
Sbjct: 594  EHKTLEVTSGRIMMGTMDETGKLQYGQVFIQYSR---------------EVDKPQADKVV 638

Query: 811  IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
             +G V + KNP  HPGD+R   AVD PEL H+ DC+VFP +G RPH +E SGSDLDGD+Y
Sbjct: 639  HQGQVTVTKNPYFHPGDMRKFTAVDVPELRHMVDCIVFPSRGPRPHPDEMSGSDLDGDMY 698

Query: 871  FVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVV 930
            FVTW E LI P +++ P M++ A   + L RPV + D+IEFFA+++ +  LG I NAH+V
Sbjct: 699  FVTWREGLILP-RENRPAMDFTAQPKRVLHRPVQESDMIEFFAEYIGSNQLGLIANAHLV 757

Query: 931  HADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSN 990
            HAD  + G   + CI LA+L + AVD PKTG+   +   L+P++YPDFM K     Y+S 
Sbjct: 758  HADKEDQGIFSQKCIDLAQLHSDAVDAPKTGQCPELKGDLRPEVYPDFMMKSDKPQYRSE 817

Query: 991  KILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVD-FIADAWNQKCSYDGQ 1049
            +I+GRL+R+ ++  D     S   DI       D DL V E  D +I DA  Q   Y+  
Sbjct: 818  RIIGRLFRKCQE-LDSANQRSGTDDIVYHTSRIDHDL-VREGFDSYIEDAQTQLNIYNNM 875

Query: 1050 LNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGE-------LKERLKHSYSALRKEFRQV 1102
            +  ++  Y +  E E+V+G I  + +     + E       ++ R K  +   R EF + 
Sbjct: 876  MMSIMSLYGITSEGEVVSGCILKVKQRLGLLKNERFEVAEYVRARFKTLWRKTRAEFFKQ 935

Query: 1103 FEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWI 1162
            F     D E LSE+ +     +KASAWY VTY      K LD   +       LLSF W+
Sbjct: 936  F-----DVEELSEERRKEEQLKKASAWYMVTYSD--ANKPLDPSPK-------LLSFPWV 981

Query: 1163 ANDYLARIK 1171
              D LA +K
Sbjct: 982  VYDVLASLK 990



 Score =  151 bits (382), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 143/261 (54%), Gaps = 32/261 (12%)

Query: 408 DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEG---LQTMNANV 464
           D  V  R++V+TPT+   L PE  + NRV+R+Y    D F+RV F DE    L   N N 
Sbjct: 365 DHYVYARKVVVTPTQMLFLKPEPIVENRVVREYG--VDNFIRVAFRDEDFSKLAVTNPNS 422

Query: 465 LSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF 524
                   +R +T            RV+ +L  G  +  R F +L  S+SQ+R+   W +
Sbjct: 423 --------IRCVT-----------SRVKDVLERGIRIGERHFKYLGSSNSQMREHGCWMY 463

Query: 525 SEDGKT--SVLDIKKWMGRFT-DKNIAKCAARMGQCFSSTYATVEVPPTEVDPEL-PDIK 580
           +   KT  S  DI+ WMG  + ++ +A   +R+GQ FSS+   V V   +   EL  D++
Sbjct: 464 AAVDKTTTSTSDIRGWMGDLSHERCVATYVSRLGQFFSSSRNAVSVSVEDRSVELIADVE 523

Query: 581 RNG--YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR 638
            +   + FSDGIGKI+  LA +VA  L   V+P P A+QIRYAGCKGV+A  P  G+  R
Sbjct: 524 TSSGTHTFSDGIGKISVPLAKKVAAAL--GVSPVPSAFQIRYAGCKGVLAQDPTLGNTDR 581

Query: 639 MSLRESMNKFQSHHTTLEICS 659
           + +R SM KF+S H TLE+ S
Sbjct: 582 IQIRGSMKKFESEHKTLEVTS 602


>gi|384495057|gb|EIE85548.1| hypothetical protein RO3G_10258 [Rhizopus delemar RA 99-880]
          Length = 1125

 Score =  271 bits (694), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 220/868 (25%), Positives = 388/868 (44%), Gaps = 101/868 (11%)

Query: 329  SFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLK 388
            +FE+ +++    +  I+ ++   D+F+  +      +    L  I + +  ++D      
Sbjct: 287  TFEVQYMLQHTFNLKILREYNTDDNFYQAISNLEPYIACKLLSLISAGQRRLYDPNMS-- 344

Query: 389  LVQEWLLKDPELYKGPKQI-DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRF 447
             +     ++P +   P+ I +    +R+++ITPT  Y L P ++  N +  +++  +DRF
Sbjct: 345  -INNAFKRNPYITDPPEPIPEGYTYLRKVLITPTSVYPLQPILQKMNHLQYQFQRYSDRF 403

Query: 448  LRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFS 507
            L + F DE L             PI+     N   Q  +++ R+  +L  G  L GR + 
Sbjct: 404  LLIQFTDEEL------------GPIIPSPHPN---QNDKLYNRIFKVLKRGLMLSGRYYE 448

Query: 508  FLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKN-IAKCAARMGQCFSSTYATVE 566
            FL  S   LRD S WFF+   + +  DI  W+G F + + + K    +GQ  +    ++E
Sbjct: 449  FLCSSLDDLRDHSCWFFAPTDELNRDDIIYWLGDFQEISCVPKYIQSVGQVMAPRLTSLE 508

Query: 567  VPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGV 626
            + P EV+ E+ D + NG ++S   GK++P +A E++  L L   P    + +  AG +G+
Sbjct: 509  IKPKEVE-EIDDYEHNGIIYSSECGKMSPQVAREISSLLGLKYTPNVVKFNL--AGARGI 565

Query: 627  VACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMF 686
            +          ++ LR     F +   TLEI   ++ +  +L+R  ITLL+ L +   +F
Sbjct: 566  LML-SNYLQKRKIQLRTGQIHFNTERLTLEINKISKRERAYLDRYSITLLTGLGIHPVVF 624

Query: 687  WSMQDSMLSK-----------LNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTE 735
              + + +L +           LN ++   D  +    A C  +      +L +GF  +++
Sbjct: 625  QQITEGVLQEYLMGGPQKENFLNHLM---DEYYSDHFAKCFNR------VLCSGFLERSD 675

Query: 736  PHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCF 795
            P +  ++   +   L  ++   +I++  G      +DE G L   + F Q S        
Sbjct: 676  PLITNLVLAFQNKVLDEIKGNTKIYIQDGARAFAVMDETGSLGENEVFFQTS-------- 727

Query: 796  SKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRP 855
                +      +L VI G  +I +N   +P D+ I++AVD P+L    + L++     R 
Sbjct: 728  ----TSAGLDSELNVIIGKCLIFRNSSCNPNDVMIVKAVDSPKLRSYTNVLIYSAVSSRH 783

Query: 856  HTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKH 915
              N  S  D D                + ++ P+++               D+ +F  K+
Sbjct: 784  LLNICSHDDAD----------------ENNFTPIKFG--------------DVSKFIVKY 813

Query: 916  MVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY 975
            +  +    I +A V  AD         N +  A+  +  + + KTG  V     L     
Sbjct: 814  ISEDQTKLIKDAWVASADRHSTSIYHGNALYFAQQLSIMIAYAKTGISVPTSEELYEYPI 873

Query: 976  PDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDF 1035
            PDFM +++  SY+S K LG ++R  K   ++   VS+  +       YDT L V     F
Sbjct: 874  PDFMEQDSLMSYQSKKPLGYIHRIVK-TIEKRPYVSNRCE-------YDTRLYVEGMHKF 925

Query: 1036 IADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRK-QGELKERLKHSYSA 1094
            I DA   K  YD  L  L+ +Y +  E E ++G I   PKY S   + EL +++K +Y  
Sbjct: 926  ILDARKTKMRYDNSLRLLMGEYGICSEIEFISGCIVHFPKYTSESDKKELTQKIKMAYIQ 985

Query: 1095 LRKEFRQV--FEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSAR 1152
             + E+++   FE    D + LSEDE N   E KA+AWY VTYHP   K+     ++++  
Sbjct: 986  FKNEWKKYFEFEFYKEDVKHLSEDELNCYVEAKAAAWYYVTYHPAENKE----YQKNTEV 1041

Query: 1153 SVVLLSFAWIANDYLARIKIRCREMANI 1180
                LSF W+ +DY+  I  +  E  NI
Sbjct: 1042 LSRCLSFPWVIDDYIVYIASKNSERPNI 1069


>gi|336273462|ref|XP_003351485.1| hypothetical protein SMAC_00026 [Sordaria macrospora k-hell]
          Length = 1226

 Score =  271 bits (694), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 196/631 (31%), Positives = 308/631 (48%), Gaps = 75/631 (11%)

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
            + ++ R ++TPT+     PE+E  NR+LRK+ +  D FLRV F +E  Q           
Sbjct: 411  LTKIYRALVTPTRIELHGPELEAMNRILRKFPEHQDHFLRVQFGEEDGQ----------- 459

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGK 529
                 D+  NS      +++R + +L+ G  + GR + FL FS S LR  S W  +    
Sbjct: 460  -----DLFFNSTVSMDVIYQRFKDVLTKGISVGGRVYRFLGFSHSSLRAHSLWLSAPFIH 514

Query: 530  TSVL----DIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDP-ELPDIKRNG 583
              VL    +I + +G F + ++ A+ AAR+GQ FS T  +V +    +      D+KR  
Sbjct: 515  NGVLRISENIIEGLGDFRNIRSPARRAARIGQAFSETPYSVSLHDHGIAVIRQNDVKRGK 574

Query: 584  YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRE 643
             VFSDG+GKI+   A+EV  +        P   Q+R+AG KG++A   A+  G ++ +R+
Sbjct: 575  RVFSDGVGKISQG-ALEVIHREIPASKGYPNCLQVRWAGAKGMLAL-DARLPGRQICIRD 632

Query: 644  SMNKFQSH-HTTLEICSW-TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
            SM KF+SH    LEIC   ++  P  LNRQ+I +L  +  P + F  +Q+  L +L  + 
Sbjct: 633  SMEKFRSHDEEHLEICDMASKPIPLMLNRQMIKILEDMGAPAKWFVRLQEKELQRLRAIT 692

Query: 702  VDSDVAFEVLTAACA----EQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKA 757
                     L   C       G     +     + + +  LRG++  +   +L  L+ KA
Sbjct: 693  NSVHNVAAFLKLQCVGDSVHLGQFLKDVHKMNIDYRKDQFLRGIVESVVLRELRLLKHKA 752

Query: 758  RIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVI 817
            RI VP G  L G +DE G+L  G+ ++          +     RF +        G VV+
Sbjct: 753  RIPVPRGITLFGVMDETGLLREGEVYV---------TYETVDDRFKDPP----TSGSVVV 799

Query: 818  AKNPCLHPGDIRILEAV----DHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVT 873
             ++P LHPGDI+I + V     HP L  L +C+VF Q G+R   ++ SG DLDGD + V 
Sbjct: 800  TRSPALHPGDIQIAQNVIPPAGHP-LRELKNCIVFSQNGERDLPSQLSGGDLDGDTFNVI 858

Query: 874  WDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHAD 933
            WD+ ++    +++   +Y     + L R ++ +D+ +FF + M  ++LG I   H++ AD
Sbjct: 859  WDQKIVS-KLETFAAADYPRVTPRELNREIESKDMADFFVEFMKADHLGVIAVRHMILAD 917

Query: 934  HSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY-PDF-------------- 978
              + G  DE+C+ LAEL + AVDF K+G  V +    +P  Y PD               
Sbjct: 918  VRDQGTGDEDCLKLAELHSQAVDFSKSGIHVDITELPRPPRYRPDLPDVKIHDKSKIDLE 977

Query: 979  -----------MGKEAYQSYKSNKILGRLYR 998
                            Y+ Y S K+LG+LYR
Sbjct: 978  EQYLKPDNDDDDDTPRYKYYASKKLLGKLYR 1008


>gi|296416873|ref|XP_002838094.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633999|emb|CAZ82285.1| unnamed protein product [Tuber melanosporum]
          Length = 1218

 Score =  270 bits (690), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 255/827 (30%), Positives = 373/827 (45%), Gaps = 140/827 (16%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI--A 470
            V  + ITP   Y   P  E  NRVLRKY D  + F+RVTF +E  + +   +  + +  +
Sbjct: 440  VHHVSITPAGCYFFGPLPEPQNRVLRKYPDHHEYFIRVTFCEEDGEPL---LFQHKVDQS 496

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FSED 527
            PI ++              + R  LS G  + GRKF FL FSSS LR  S WF   F  D
Sbjct: 497  PIYKN--------------QFRFYLSEGITIAGRKFEFLGFSSSSLRTQSCWFMAPFYLD 542

Query: 528  GKTSVLDIKKWMGRFTDKNIAKC----AARMGQCFSSTYATVEVPPTEVDPELPDIKRNG 583
            GK   LD K    R  D +   C    AAR+GQ FS TY +++V   E + E+PD+ RNG
Sbjct: 543  GK--YLDPKIVTSRLGDFSSITCPGKYAARVGQAFSDTYGSIDVR-AEHEVEIPDVVRNG 599

Query: 584  YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRE 643
              FSDG+G I+  L   V ++ +      P  +QIR+AG KGVV+    +  G +  LR 
Sbjct: 600  RTFSDGVGTISQQLLDRVWRESESLRKTRPTVFQIRFAGAKGVVSL-DTRLVGDKFCLRP 658

Query: 644  SMNKFQ-SHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLV 702
            SM KF+ S    +EIC+   + P +LNR +I +L  + V +  F ++Q   +  L Q   
Sbjct: 659  SMIKFRGSSDRKIEICNSADWLPMYLNRPLIKVLEDIGVFESTFMTLQKEAIEDLRQSTT 718

Query: 703  DSDVAFEVLTAACAEQGNTAAIML--------SAGFNPQTEPHLRGMLTCIRAAQLWGLR 754
                A   L     ++  + AI L        + GFN + +  L           L  L+
Sbjct: 719  SVANAANFLKR---QRIASTAIRLPWVIESLNNLGFNFRDDHFLEQAFELSLITSLRSLK 775

Query: 755  EKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGF 814
             KARI V  G  L+G +DE G L+ GQ ++ V             +R   T   + I G 
Sbjct: 776  HKARIPVKKGMTLVGVMDETGYLQEGQIYVTVQ------------ARDKSTS--ESIAGR 821

Query: 815  VVIAKNPCLHPGDIRILEAV-------DHPELHHLYDCLVFPQKGDRPHTNEASGSDLDG 867
            V+I ++P  HPGD+++  A+       D P L  L +C+ FPQ+G+R   +     DL  
Sbjct: 822  VLITRSPVHHPGDVQMALAIGTNQLPPDSP-LRALRNCVAFPQRGERDMPSMLGAPDL-- 878

Query: 868  DLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNA 927
              Y + +D       K ++ P EY     K L RPV   DI++FF + M N  LG I + 
Sbjct: 879  --YNIIYDARF--SLKTTYDPAEYPKVPTKDLGRPVKTSDIVDFFLEFMENNLLGMISSR 934

Query: 928  HVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY-PDFM------- 979
            H++ AD    G    +C+ LAELA+TAVDFPKTG  V+     K     PDFM       
Sbjct: 935  HLITADKKVEGVHHPDCLKLAELASTAVDFPKTGIKVSRSDFPKATFAKPDFMAPGPRIL 994

Query: 980  ---GKEAYQS-----------------YKSNKILGRLYRQ-SKDAYDEDI--SVSSE--- 1013
               G E  +                  Y+S K+LG+LYR+  + A+  ++  +V+ E   
Sbjct: 995  IKRGPEFVEEDVVPDDDDDDEDTPTLYYESEKVLGKLYREIDETAFLREVQGTVNKERRA 1054

Query: 1014 --VDINPVDIHYDTDLE--VPESV---DFIADAWNQKCSYDGQLNGLLEQYKVN------ 1060
              VD   V +     LE  +P +    D+I  A   K +Y+G +  ++  Y         
Sbjct: 1055 RNVDEGAVVLGIWEWLEEAIPSNYKWEDYIGVAAELKEAYEGNVERMMLNYSDMPWKYRL 1114

Query: 1061 REEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNA 1120
            RE E+  G+I    +   R+        K + S +R EF ++                ++
Sbjct: 1115 REVEVFIGNIVGKERQTQRQ--------KDASSQMRDEFDRL---------------ASS 1151

Query: 1121 LFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYL 1167
            + E   S   + T        SL L E++      L SF WIA   L
Sbjct: 1152 IVESMQSESREKTLGIGMASLSLCLPEKNWKDLDSLKSFTWIAVSVL 1198


>gi|340517754|gb|EGR47997.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1250

 Score =  270 bits (690), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 235/768 (30%), Positives = 340/768 (44%), Gaps = 99/768 (12%)

Query: 403  GPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNA 462
            GP   D    V + V+TPT+     P+ E +NRVLR +   +D  LRV F DE  Q    
Sbjct: 422  GPPIPDSQTWVLKAVVTPTRIMLQGPDAENNNRVLRMFPHHSDYLLRVIFSDEDGQ---- 477

Query: 463  NVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAW 522
                        D+ L      + +F R R +L  G  + GRK+ FL FS S LR  SAW
Sbjct: 478  ------------DLALFPSVDNSAIFGRYRKVLKDGIQVAGRKYEFLGFSHSSLRSHSAW 525

Query: 523  FFSEDGKTSVL----DIKKWMGRFTDKNI-AKCAARMGQCFSSTYATVEVPPTEVDPE-L 576
            F +       L     I   +G F++  I AKCAAR+GQ FS T   V++    +  + +
Sbjct: 526  FCAPFIDNMQLHNNESIINSLGDFSEIRIPAKCAARIGQAFSETPYAVDILKCGIGIKYI 585

Query: 577  PDIKR--NGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKG 634
            PD+K      VFSDG G I+ D   E+ + L +   P     Q+R  G KG+++      
Sbjct: 586  PDVKTADGSRVFSDGCGTISWDAIEEIWEHLPMTSTP--TCLQVRLGGIKGMLSLDSRLK 643

Query: 635  DGIRMSLRESMNKFQSH-HTTLEICSWTRFQPGF-LNRQIITLLSTLNVPDEMFWSMQDS 692
              +    +ESM KF S   T L IC        F LNRQII +L  +    E F   Q+ 
Sbjct: 644  GKVICIRKESMMKFSSSDQTMLGICDTASKPLRFVLNRQIIKILEDMGTNAEWFIDQQNK 703

Query: 693  MLSKLNQML---VDSDVAFEV-LTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAA 748
             L  L  +    V++    E  L             +   G + + +  ++ ++      
Sbjct: 704  ALDVLRNVTATAVNTSTFLEYQLVGTTVGLPKLIKYLSKIGVDYRRDNFMKTVVDHTILE 763

Query: 749  QLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKL 808
            +L  L+ KARI V  G  L G +DE G LE G+ ++          F +   +     K 
Sbjct: 764  ELRLLKHKARIPVDQGVTLFGIMDETGFLEEGEIYV---------TFDQQYDKVQGRVKH 814

Query: 809  QVIKGFVVIAKNPCLHPGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDL 865
             +  G V+I ++P LHPGDI+  +    PE   LH L +C+VF QKG R   ++ SG DL
Sbjct: 815  SLKDGLVLITRSPALHPGDIQPAQMRTPPEGHPLHDLKNCVVFSQKGTRDLPSQLSGGDL 874

Query: 866  DGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTIC 925
            DGDLY + WD  +IP  K+ +    Y       L R V + DI +FF   M  + LG I 
Sbjct: 875  DGDLYNIFWDPRVIP--KQFFTAASYPRVIPPPLDRAVTRDDIADFFVTFMETDILGMIA 932

Query: 926  NAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK-PKLYPDFM----- 979
            N H V AD  E G L + CI LAEL +TAVD+ KTG  VT+    K P++ PDFM     
Sbjct: 933  NRHQVSADAKEEGTLHQECIKLAELHSTAVDYSKTGIPVTVQQLPKAPRMRPDFMAPAPP 992

Query: 980  -------------------------GKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEV 1014
                                     G    + YKS KILG LYR   +       V   +
Sbjct: 993  AHLYDRDEVDHIGDPDSDDDDEDGLGVSKPRYYKSLKILGELYRGVDEKKIWGKDVQRPI 1052

Query: 1015 DINPVDI------HYDTDLE----VPESVDF---IADAWNQKCSYDGQLNGLLEQYKVN- 1060
            D +   +      H    L+     P  +D+   I +AW  +  Y+G++   + ++  + 
Sbjct: 1053 DKSGPSVWVRLHEHVRAALQDEGYAPSDIDYTRRIDEAWKLRELYEGEVVDNMYRFSDSP 1112

Query: 1061 ----REEELVTGHIWSMPKYNSRKQGE----LKERLKHSYSALRKEFR 1100
                +E ++  G I +     +R+Q +    LKE +    S   K+ R
Sbjct: 1113 RAPIKEVDVFCGSILNPRGSQTRRQRDSSIKLKEEMDRVMSFYVKQMR 1160


>gi|350629963|gb|EHA18336.1| hypothetical protein ASPNIDRAFT_176277 [Aspergillus niger ATCC 1015]
          Length = 1152

 Score =  270 bits (689), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 203/656 (30%), Positives = 320/656 (48%), Gaps = 87/656 (13%)

Query: 403  GPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNA 462
            GP   D++  + +++ITPT+     PE+E  NR+LR++ +  D F+RV F DE  Q    
Sbjct: 390  GPS--DNLTPIHKVMITPTRVTLHGPELEPRNRILRRFPNHHDYFIRVQFCDENGQ---- 443

Query: 463  NVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRD--CS 520
                        D+  NS      VF R + +L+ G  + GR +SFL +S S LR    S
Sbjct: 444  ------------DLHFNSRIHYDDVFSRFKHVLTHGIQIAGRTYSFLGWSHSSLRSHAFS 491

Query: 521  AWFFSEDGK-TSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVD-PELP 577
            + F  E G+  +   I K +G F+  ++ A+CAAR+GQ F+ T   + +   +++  E+ 
Sbjct: 492  SPFVDESGQFQTHFSIIKALGDFSKIQSPARCAARIGQAFTDTPYAISLSEYDIEVSEMA 551

Query: 578  DI--KRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGD 635
            D+  K    VFSDGIG ++ ++A  +   +      P C +Q+R  G KG++A    +  
Sbjct: 552  DVTSKDGKRVFSDGIGTLSWNVAKSIWHHIPEKKGFPTC-FQVRLGGAKGMLAV-DGRLS 609

Query: 636  GIRMSLRESMNKFQSHHTTLEICSWT-RFQPGFLNRQIITLLSTLNVPDEMFWSMQDSML 694
            G ++ +R SM KF+     LEIC+   +     LNRQ+I +L  +  PD+ F ++Q++ L
Sbjct: 610  GSQVKVRPSMIKFEGDMKDLEICAMAAKPMVLVLNRQMIKILEDMGTPDDWFLTLQEAAL 669

Query: 695  SKLNQMLVDSDVAFEVLTAACAEQGNTAAIML------SAGFNPQTEPHLRGMLTCIRAA 748
            +KL  +   +  + EV     A  G+T  +            + + EP +R ++  +   
Sbjct: 670  TKLRSVTASAHNS-EVFIKRQA-VGDTIGLYRLFRHCHQRDLDYRKEPFIRSVVEAVVLK 727

Query: 749  QLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKL 808
            +L  L+ KARI V  G  L G +DE G+LE  Q ++          +     R A     
Sbjct: 728  ELRLLKHKARIPVFKGITLFGVMDETGLLEADQVYV---------TYETIEGRHAPPPN- 777

Query: 809  QVIKGFVVIAKNPCLHPGDIRILEAVDHPELH---HLYDCLVFPQKGDRPHTNEASGSDL 865
                G V++ ++P LH GDI+  + V  P+ H    L +C+VF  KG R   ++ SG DL
Sbjct: 778  ---AGMVLVTRSPALHDGDIQFAQNVIPPDNHPLAELTNCIVFSSKGYRDLPSQLSGGDL 834

Query: 866  DGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTIC 925
            DGD++ V WD +  P   +++ P +Y       + RPV++ D+ +FF   M  ++LG I 
Sbjct: 835  DGDIFNVIWDTDAYP--VRTFAPADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGVIA 892

Query: 926  NAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY-PDFMG---- 980
              H++ AD    G     C  LA+L +TAVDF KTG  V M    K K + PDFM     
Sbjct: 893  TRHMIMADQEAEGTSHPVCRKLAQLHSTAVDFSKTGIPVQMSEIPKGKPFRPDFMAPGPV 952

Query: 981  ----------------KEAY----------QSYKSNKILGRLYR--QSKDAYDEDI 1008
                            + AY          + Y+S KILG+LYR    +  + EDI
Sbjct: 953  ARIHNKSDIELEEYVIQAAYDEDDDMEPFHKYYRSEKILGKLYRGVDERQIWQEDI 1008


>gi|345563096|gb|EGX46100.1| hypothetical protein AOL_s00110g264 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1279

 Score =  268 bits (686), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 203/611 (33%), Positives = 300/611 (49%), Gaps = 58/611 (9%)

Query: 391  QEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRV 450
            QE++++  + Y+   Q    V + R+ ITPT  +   P +E  NRVLR+Y D  + FLRV
Sbjct: 446  QEYMVR-MKFYRKENQ----VLIHRMSITPTGMFPGGPNLEPKNRVLREYHDYLNHFLRV 500

Query: 451  TFMDE--GLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSF 508
            + ++E  G     + V   +I           +  +   F    S L     + GR F F
Sbjct: 501  SLVEEDGGDLRFESGVDGKYI-----------YDGRFLPFLMPESNL---LKIAGRTFKF 546

Query: 509  LAFSSSQLRDCSAWFF---SEDGKTSVLD-IKKWMGRFTDKNI-AKCAARMGQCFSSTYA 563
            L FS S LR  +AWF    S   +T  +D + + +G F    I  KCAAR+GQ F+ T A
Sbjct: 547  LGFSQSSLRSHTAWFMATISTPRRTITVDGVIERLGDFKSIKIPGKCAARIGQAFTDTVA 606

Query: 564  TVEVPPTEVDPELPDIK----RNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIR 619
             +++    +  +   IK       Y FSDG G ++  L   + +K +   +P P  +QIR
Sbjct: 607  NIKIDDFMIAQKRDIIKIAPGGKKYTFSDGCGTVSKPLIELIWKKGEFTSDPKPTVFQIR 666

Query: 620  YAGCKGVVACWPAKGDGIRMSLRESMNKFQS-HHTTLEIC-SWTRFQPGFLNRQIITLLS 677
            + G KGVVA    + D I + L +SM KF    +   EIC S+T+  P +LNR II +L 
Sbjct: 667  FRGAKGVVALDSTQRDPI-LCLYDSMVKFDGLKNKVFEICRSFTKPLPFYLNRCIIKILE 725

Query: 678  TLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL--TAACAEQGNTAAI--MLSAGFNPQ 733
               VP + F  +Q   L+ L +     D A   L     C +      I  + + G++ +
Sbjct: 726  DRGVPIKNFMDLQGRALATLRERTFTPDSAAHFLDYQNRCTQANIPFLIRELFALGWDYK 785

Query: 734  TEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGN 793
             +  LR ++       L  ++ +ARI V  G  L+G LDE G L+ G+ +  +       
Sbjct: 786  EDNFLRKVVEFTMLTTLRDMKYRARIQVDKGFTLVGVLDETGYLQEGEIYCPIQR----- 840

Query: 794  CFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP---ELHHLYDCLVFPQ 850
                      E  K +  +G V I +NP LHPGDI+I+ AV+ P    L  L +C+VF Q
Sbjct: 841  ----------EGGKREAHRGVVAICRNPALHPGDIQIVTAVEVPYDSPLRDLMNCVVFSQ 890

Query: 851  KGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIE 910
            +G R   +  SG DLDGD++ + W+ +L+P  + S  P ++ A EA    R V Q DI +
Sbjct: 891  RGQRDLPSMLSGGDLDGDIFHIWWEPSLMP--RFSSAPSDFPAVEALNYDRDVTQADIGK 948

Query: 911  FFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHL 970
            FF   M N+ LG I  AH+V AD    G     C+  A +A+ AVDFPKTG  V M    
Sbjct: 949  FFLDFMENDKLGVISVAHMVLADQEPAGVRSAACLTCARMASQAVDFPKTGVPVRMSELP 1008

Query: 971  K-PKLYPDFMG 980
            + PK  PDF+ 
Sbjct: 1009 RTPKARPDFLA 1019


>gi|346325370|gb|EGX94967.1| rna-dependent rna polymerase [Cordyceps militaris CM01]
          Length = 1252

 Score =  268 bits (685), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 232/790 (29%), Positives = 351/790 (44%), Gaps = 128/790 (16%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            V + +++PT+     P+ E  NRVLR + D  D+FLRV+F DE  Q +            
Sbjct: 437  VFKAIVSPTRISLQGPDPESRNRVLRMFPDRGDQFLRVSFCDEDGQRL------------ 484

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS----EDG 528
                  N       +++R R +L+ G  + GR FSFL FS S LR  S WF +     DG
Sbjct: 485  ----AFNPRVSNDPIYERFREVLTKGIRIAGRHFSFLGFSHSSLRSHSTWFLAPFIDADG 540

Query: 529  KTSVLD-IKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPE-LPDIKR--NG 583
            +    D I   +G F+D    AKCAAR+GQ FS T   V++  T +    +PD+K     
Sbjct: 541  QRQNRDTILAVLGNFSDILTPAKCAARIGQAFSETPYAVDLFETRIGVRWIPDVKSADGN 600

Query: 584  YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRE 643
             VFSDG+G I+     +  + L        C +QIR+AG KG++   P     +    +E
Sbjct: 601  RVFSDGVGTISWGAVEDFWKALPKRSAGVTC-FQIRWAGVKGLLVLDPRLPGKVICVRKE 659

Query: 644  SMNKFQSHH-TTLEICS-WTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
            SM KF S     L IC   +R     LNRQ+I +L  +      F ++Q+  L  L  + 
Sbjct: 660  SMMKFPSQDLKELGICDVASRPLRLVLNRQVIKILEDMGTSASWFLALQNDALDFLRAV- 718

Query: 702  VDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQT---------EPHLRGMLTCIRAAQLWG 752
                 A  + T+   +  +  + +    F  Q          +  L+ ++  +   +L  
Sbjct: 719  ----TATPLNTSTFLQYQDIGSAIGLPSFIKQLSKMDIDYRHDTFLKSVVEHVVLRELRL 774

Query: 753  LREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIK 812
            L+ KARI VP G  L G +DE G L   + +I        +   K G R   T    +I 
Sbjct: 775  LKHKARIPVPKGVTLFGVMDETGFLGENEVYIT-----FDSTRGKSGERMDAT----LID 825

Query: 813  GFVVIAKNPCLHPGDIRILEAVDHPELH---HLYDCLVFPQKGDRPHTNEASGSDLDGDL 869
            G V++ ++P LHPGDI+I + V  P+ H    L +C+ F Q+G R   ++ SG DLDGDL
Sbjct: 826  GPVIVTRSPALHPGDIQIAKMVTPPDSHPLKSLRNCIAFSQRGSRDLPSQLSGGDLDGDL 885

Query: 870  YFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHV 929
            Y V WD    P  K ++ P +Y      +L RPV + DI  FF   M ++ LG I   H 
Sbjct: 886  YNVIWDPKAYP--KHTFDPADYTRVVPPSLDRPVTRHDIANFFIDFMRSDILGLIATRHQ 943

Query: 930  VHADHSEYGALDENCILLAELAATAVDFPKTGKIVT---MPAHLKPKLYPDF-------- 978
            + AD  E G  D +CI LAE+ +TAVD+ KTG  V    MP    P+  PDF        
Sbjct: 944  ILADVQEAGTSDASCIKLAEMHSTAVDYSKTGIAVNWRDMPR--APRSRPDFLAPAPPVF 1001

Query: 979  ---------------------MGKEAYQSYKSNKILGRLYR--QSKDAYDEDI------- 1008
                                 M     + ++S KILG LYR       + E+I       
Sbjct: 1002 LYDLGQISHIAEDDDDDDGNDMNSAKPRYHRSEKILGHLYRGIDENKIWSENIYRSIPKL 1061

Query: 1009 ----------SVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYK 1058
                       V +E+++  ++++Y++  +          AW  +  Y+  ++  +  + 
Sbjct: 1062 SSSVWEQLLERVQAELNLRRINMYYESHRQ---------RAWKIRALYEDSISENMWHFS 1112

Query: 1059 VNR-----EEELVTGHIWSMPKYNSRKQGE----LKERLKHSYSALRKEFRQVFEKMDSD 1109
             N      E E   G I +     SR+Q E    LK+      + + K  R   E++D D
Sbjct: 1113 ENSRSHITEAEAFCGSILNKRGVQSRQQRETSIQLKDETDRVMTWITKLIRDGVERID-D 1171

Query: 1110 CELLSEDEKN 1119
             ++   DE +
Sbjct: 1172 EDVYYSDESD 1181


>gi|281207108|gb|EFA81291.1| RNA-directed RNA polymerase [Polysphondylium pallidum PN500]
          Length = 2852

 Score =  267 bits (683), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 252/819 (30%), Positives = 385/819 (47%), Gaps = 116/819 (14%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSY--FIA 470
            V+   ITPT+     P ++L NR +R++   ++RF+ V F +E LQ      + Y  F+ 
Sbjct: 1320 VKSAYITPTRVILNLPRIQLGNRCIRQFP--SERFMSVQFTEEDLQIR----IEYQDFLL 1373

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS-EDG- 528
            P    I LN  +              G FY       FL  SSSQ+R+  +WF+  E+G 
Sbjct: 1374 PFYSHILLNGINVPEM----------GTFY-------FLGSSSSQVRNYQSWFYCVEEGV 1416

Query: 529  --KTSVLDIKKWMGRFTDKN-IAKCAAR-MGQCFSSTYATVEVPPTEVDPELPDIKRNGY 584
              ++ + +I++ M   TD +  A+ A R M   F ST  T+ +PP E    L DI RN +
Sbjct: 1417 NKESRLKEIREAMIGKTDSSWSARKALRAMSLVFPSTIPTIRIPPHEYHEGLDDIVRNDH 1476

Query: 585  VFSDGIGKITPDLAMEVAQKLKLDVNPP--PCAYQIRYAGCKGVVACWPAKGDGIRMSLR 642
             F++G G +     +E A+++ +  N P    AYQIR  G KGVV+   +   GI   LR
Sbjct: 1477 NFTEGCGYV----GIETAREIAIAGNFPQDTSAYQIRIGGNKGVVSVHHSIRRGIY--LR 1530

Query: 643  ESMNKF-----QSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKL 697
            +SM KF      +++ TLE+ S +  +   LNRQII LL  L V D  F S+Q + L KL
Sbjct: 1531 KSMRKFNTTDEHAYNRTLEVISVSSKKACNLNRQIINLLVGLGVLDGFFLSLQQAALDKL 1590

Query: 698  NQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKA 757
              +  D  V   ++    +       + L+A      +P +   L      +L  +++K 
Sbjct: 1591 AHIFNDESVRRHIMHELSSIDEAFDELDLAAN-----DPLICSSLQLCYLKKLDQIKDKC 1645

Query: 758  RIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVI 817
             I + + R ++G  DE G+L   + F+Q+S     +    H SR       +VI G V +
Sbjct: 1646 MIEIDSARTVLGVSDESGILGPDEVFLQIS----IDEEDGHISR-------KVITGQVFV 1694

Query: 818  AKNPCLHPGDIRILEAVDHPELHHLY-DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE 876
             KNPCLHPGDIR+L AVD PEL + Y D + F Q G+ P+  + SGSDLDGD YFV +D+
Sbjct: 1695 CKNPCLHPGDIRVLTAVDVPELRNCYVDVIAFSQNGEVPNFKQCSGSDLDGDRYFVGFDQ 1754

Query: 877  NL---IPPSKKSWPPMEYNAAEAKTLTRPVD--QRDIIEFFAKHMVNENLGTICNAHVVH 931
             +   I P     PP   + +    +  P D   + +++ +  ++   +LG I  +H+  
Sbjct: 1755 TMVKFITPE----PPFLGDESANTKVEPPYDGSHKQLVKQYITNITRGSLGKIALSHLAI 1810

Query: 932  ADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKP-----KLYPDFMG----KE 982
             D  ++       I LA      VD  KTG    +P  +K      KLYP+FM     K+
Sbjct: 1811 CD--KFSPTHPLAIELAIQHFIEVDAFKTGVNGKVPDIVKKHLNYFKLYPNFMESSMPKK 1868

Query: 983  AYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPV-DIHYDTDLEVPESVDFIADAWN 1041
             Y  + S+KILG+LY+         ISV  +     + D   D  L V    +++ADA  
Sbjct: 1869 NY--WVSHKILGKLYQ---------ISVPLKAIPRYIPDTFVDEGLLVDGYQEYLADAKK 1917

Query: 1042 QKCSYDGQLNGLLEQYKVNREE----ELVTGHIWSMPKYNSRKQGELKERLKHSYSALRK 1097
                Y   +N LL +Y ++REE    E +   I SM +Y      ELK+       + R 
Sbjct: 1918 TYTRYKFAINSLLTRYDIDREEDIIIEFIKETINSM-RYTKLIIDELKKSYHEIQDSFRD 1976

Query: 1098 EFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLL 1157
            EF +VF   D D +     E     ++K SAWY+V Y         D++   +      L
Sbjct: 1977 EFIRVFPGKDVDEKKRFNSEA---IQKKVSAWYKVAYS--------DVENDKT------L 2019

Query: 1158 SFAWIANDYLARIKIRC-REMANIDTSKPVNYLARYVAD 1195
            +F WI   Y  +  I+   E  +  ++  + YL  +  D
Sbjct: 2020 TFYWIVKQYQPKRSIKTGHEQPDHLSTSIIKYLGDHQTD 2058


>gi|316989903|gb|ADU77017.1| RNA-dependent RNA polymerase 1c [Cucumis sativus]
          Length = 400

 Score =  267 bits (683), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 173/423 (40%), Positives = 232/423 (54%), Gaps = 31/423 (7%)

Query: 768  MGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGD 827
            MGCLDE   LE GQ F+  S P           R +E   +   K  VV+AKNPCLHPGD
Sbjct: 1    MGCLDETQTLEYGQVFVHCSIP----------GRSSEGNFVVKGK--VVVAKNPCLHPGD 48

Query: 828  IRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWP 887
            +R+L+A+D   LHH+ DC+VFPQKG RPH NE SGSDLDGDLYFV WD  L     K   
Sbjct: 49   VRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELT--CIKQVK 106

Query: 888  PMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILL 947
            PM Y  A    L   V   ++ E+FA +MVN+ LG I NAH V AD +   A+   CI L
Sbjct: 107  PMSYKPAPTIQLDHDVTIEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKL 166

Query: 948  AELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDED 1007
            A+L + AVDFPKTG    +P +L+   YPDFM K    +Y SN +LG+L+R  KD    D
Sbjct: 167  AKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDV-SSD 225

Query: 1008 ISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVT 1067
            +S             YD D+EV     ++ +A++ K  YD +L  L++ Y +  E ELV+
Sbjct: 226  VSAFEIFTREVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVS 285

Query: 1068 GHIWSMPK-YNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKA 1126
            G+I  M K ++ RK     E++  +  +LRKE R  F + +S        ++ A    +A
Sbjct: 286  GNILKMAKSFDKRKD---LEQIAFAMKSLRKEVRFWFNENESKSTYDDIQDEYA----RA 338

Query: 1127 SAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPV 1186
            SAWY VTYHP++     +  ++D       LSF W   D L +IK   RE  ++  S P 
Sbjct: 339  SAWYCVTYHPDYWGCYNEGTKRDH-----FLSFPWCVADKLIQIK---REKMSMRNSSPK 390

Query: 1187 NYL 1189
            + L
Sbjct: 391  SSL 393


>gi|391864263|gb|EIT73559.1| RNA-directed RNA polymerase QDE-1 [Aspergillus oryzae 3.042]
          Length = 1188

 Score =  266 bits (679), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 221/760 (29%), Positives = 344/760 (45%), Gaps = 113/760 (14%)

Query: 409  DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYF 468
            ++ +V R+ +TPT+     PE+E  NR+LRK+ +  + F+RV F DE  +          
Sbjct: 393  NMTKVHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGE---------- 442

Query: 469  IAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FS 525
                  D+  N+      +F R + I++ G  + GR ++FL FS S LR  + WF   F 
Sbjct: 443  ------DLLFNANVDYKDIFGRFKDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWFSSPFV 496

Query: 526  EDGK--TSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEV------DPEL 576
            +D     +   I   +G+F+   + A+CAAR+GQ F+ T   V +    V      D   
Sbjct: 497  DDNGHMQTYFSIVSAIGKFSHITSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTS 556

Query: 577  PDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDG 636
            PD  R   VFSDG+G I+ ++   +   + L    P C +QIR  G KG++A        
Sbjct: 557  PDGSR---VFSDGVGAISREVVASIWADIPLKRGNPTC-FQIRLGGAKGMLAADSRLRTA 612

Query: 637  IRMSLRESMNKFQSHHT-TLEICSW-TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSML 694
            + + +R SM KF S     LEIC+  +R  P  LNRQ+I +L  +    + F+ MQ+  L
Sbjct: 613  V-IQIRPSMIKFDSEDMKNLEICNMASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEEL 671

Query: 695  SKLNQMLVDSDVAFEVL----TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQL 750
            ++L  + V +D     L     A C               N + +  LR ++  +   +L
Sbjct: 672  TRLQSITVSTDKTARFLKDKSVAECIGLYRLYRQCYWTRLNYKKDGFLRAIVEAVVLREL 731

Query: 751  WGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
              L+ KARI V  G  L G +DE G L+ G+ ++          F +   R+A       
Sbjct: 732  RLLKHKARIPVKKGMTLYGVIDETGFLQEGEVYV---------TFDRMEGRYAAPPG--- 779

Query: 811  IKGFVVIAKNPCLHPGDIRILEAV----DHPELHHLYDCLVFPQKGDRPHTNEASGSDLD 866
              G +++ ++P LH GDI+  + V    DHP  +H  +C+VF QKG R   ++ SG DLD
Sbjct: 780  -PGHILVTRSPALHCGDIQRAQNVIPPEDHPLRYH-RNCIVFSQKGSRDLPSKLSGGDLD 837

Query: 867  GDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICN 926
            GDLY V WD  L   S +++ P +Y    +  + R V   D+  FF + M ++ LG I  
Sbjct: 838  GDLYHVIWDPEL--ESVETFAPADYPRPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAI 895

Query: 927  AHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY-PDFMG----- 980
             H+V AD +  G  D +C LLA L + AVDF KTG  V M    +   Y PDF+      
Sbjct: 896  RHMVMADQAASGTRDTSCRLLAGLHSKAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGPQT 955

Query: 981  ----------------------------KEAYQSYKSNKILGRLYRQ------------S 1000
                                        +E Y+ YKS KILG+LYR             S
Sbjct: 956  RLYNKSKIGLEQHVSHANYDDDDDDADVEEPYRYYKSEKILGKLYRAIDEQSIWRKHVFS 1015

Query: 1001 KDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQY--- 1057
            +   DE+   +S +D     +     L      + + +A   + +YD  +   ++ Y   
Sbjct: 1016 ESETDEEFFWNSVIDDC---LRRCKSLPRTPREEHLDEAKRIRAAYDDAIISAMDTYSDH 1072

Query: 1058 --KVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSAL 1095
              K   E E+V G I +     +R+Q +   +L   +  +
Sbjct: 1073 PTKPINELEVVIGSIINRRGVQTRRQRDRSNKLHEEFDRI 1112


>gi|402590834|gb|EJW84764.1| RNA-dependent RNA polymerase, partial [Wuchereria bancrofti]
          Length = 1136

 Score =  266 bits (679), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 239/844 (28%), Positives = 389/844 (46%), Gaps = 139/844 (16%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V +R+++ TP +   LPPEV ++NRV+R + +  +  LR  F D+  Q +     +    
Sbjct: 60   VLIRKVMATPLRLLLLPPEVMMTNRVIRHFGE--EYALRCVFRDDNGQRLVPKEFT---- 113

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE---- 526
               R  +L    Q   +   +   L  G ++  R + FLA+S+SQ+RD   + +S+    
Sbjct: 114  ---RGRSLQD--QSLIIPDLIYRTLGTGLHIASRHYQFLAWSNSQMRDGGCYMYSDATVN 168

Query: 527  -----DGKTSVLDIKKWMGRFT-DKNIAKCAARMGQCFSSTYATVEVPPTE--------- 571
                 +   +V DI++WMG FT  KN+ K  +RMGQCF+    T+ +   +         
Sbjct: 169  DEVHGEMVYNVEDIRRWMGDFTASKNVPKLMSRMGQCFTQAQPTIMLKKDDWKVEDDILG 228

Query: 572  --VDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVAC 629
              V PE  ++    + FSDG+G+I+   A  +A+ L L   P P  YQ+R+ G KGV+  
Sbjct: 229  GIVHPETGEV----FNFSDGVGRISKKYADRIAKTLGL--CPTPSCYQVRFKGFKGVLCI 282

Query: 630  WPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPD------ 683
             P   +     L ++   F+   T +E+  ++   P  LNR +I +L  ++         
Sbjct: 283  DPLLDE-----LDQANIVFRK--TEVEVVKYSMPSPVCLNRPLIMILDQVSEKQGRHLHK 335

Query: 684  ---EMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRG 740
                   S+ +  L KL  M+ D ++A E L++  +   +   +  S G     EP  R 
Sbjct: 336  KVCNRIHSLLELELDKLAAMMFDENIATEELSSRLSLPIDFHQLH-SNGITFTNEPFFRS 394

Query: 741  MLTCIRAAQL-WGL-----------------REKARIFVPA--GRWLMGCLDELGVLEGG 780
            +L  +    + W L                  ++ + F+P   GR + G +D+ G+L+ G
Sbjct: 395  LLIAVHRYNISWFLTLYEYSNIATGIIFRIASKQIQNFLPCSMGRTMYGVIDDTGLLQYG 454

Query: 781  QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH 840
            Q FIQ S             ++  TKK+ V  G V++ KNPC   GD+R+ EAV    L 
Sbjct: 455  QVFIQYSSSM----------QYVLTKKI-VYTGSVMVTKNPCHVAGDVRMFEAVYQDALL 503

Query: 841  HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLT 900
            HL D +VFP+ G RPH++E +GSDLDGD Y V +D+ L   + +    M +  +      
Sbjct: 504  HLCDVIVFPRYGPRPHSDEMAGSDLDGDEYTVIFDKELFFENNER--AMFFPKSIPSECG 561

Query: 901  RPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKT 960
             P    D+I+FF K++  +++G + NAH++           E C  +A   A AVDFPKT
Sbjct: 562  TPPTTGDMIDFFLKYLSQDSIGRMSNAHLI----------IEICDDIARKCAVAVDFPKT 611

Query: 961  GKIVTMP--AHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP 1018
            G +   P  +H + ++ PD+M      SY+S ++LG LYR+++   D    V      + 
Sbjct: 612  G-VAAKPLLSHEQCEVMPDYMQNMIRPSYRSKRLLGELYRKARRVEDISEIVQGTKFADY 670

Query: 1019 VDIH-YDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPK-- 1075
             D   YD  L   E  + I ++   +  Y  ++  L+++Y ++ E  +++GH  ++ +  
Sbjct: 671  CDPQLYDESL-FHEQSELIQESLRLRDEYHSRIQQLMDEYGISDEASVISGHSMTIKRII 729

Query: 1076 ---------YNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSED-------EKN 1119
                     Y+S K  EL  R    +S  R+EF   F++   + + L+ D         N
Sbjct: 730  EMEKDDYSFYHSDKIVEL--RYSRIFSYFRREF---FKEFGGESDFLTVDAFGKREMRWN 784

Query: 1120 ALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMAN 1179
                 KA AWY VTY   +             RS    SF WI  D L  IK +   M  
Sbjct: 785  MALITKAKAWYAVTYTSAF-------------RSSEFRSFPWIVWDILLIIKRQIALMLK 831

Query: 1180 IDTS 1183
              TS
Sbjct: 832  SPTS 835


>gi|322712330|gb|EFZ03903.1| rna-dependent rna polymerase [Metarhizium anisopliae ARSEF 23]
          Length = 1114

 Score =  265 bits (677), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 240/752 (31%), Positives = 340/752 (45%), Gaps = 99/752 (13%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            V + ++TPT+     P++E  NRVLR +   +D FLRVTF DE     +   LSY     
Sbjct: 306  VLKALVTPTRIVLRGPDLETKNRVLRMFPGKSDHFLRVTFGDE-----DGEDLSYG---- 356

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
              D T N       +F+  R IL  G  + GR+F FLAFS S LR  SAWF S     S+
Sbjct: 357  --DRTCND-----DIFEHYRRILLRGLTVAGRRFEFLAFSHSSLRSHSAWFCSPFVGQSL 409

Query: 533  L-----DIKKWMGRFTDKNI-AKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGY-- 584
                   I K +G F +  I AKCAAR+GQ FS T   + +    +  +  D  +N    
Sbjct: 410  TVQDCRSIVKSLGVFQNIRIPAKCAARIGQAFSETPIALSLSQRGIRLQYIDDVKNSAGT 469

Query: 585  -VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLR- 642
             VFSDG+G I+ D   EV   L   +  P C  QIR AG KG+++   ++  G  + +R 
Sbjct: 470  RVFSDGVGTISIDALQEVWDCLPERLGRPTC-IQIRIAGVKGMLSL-DSQLRGKYICIRS 527

Query: 643  ESMNKFQSHHT-TLEICSWTRFQPGF-LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQM 700
            ESM KF+S     L IC        F LNRQI+ +L  + +    F + QD  +   N +
Sbjct: 528  ESMMKFKSQDLDVLGICDVGSRPLRFTLNRQIVKILEDMGIHHNWFLAWQDKAIR--NFL 585

Query: 701  LVDSDVAFEVLTAACAEQGNTAAI------MLSAGFNPQTEPHLRGMLTCIRAAQLWGLR 754
             V S            E G +  +      +   G + + +  LR ++     A+L  L+
Sbjct: 586  SVASSTRHTRAFLRQYEVGTSLRLPELIEKLEENGIDYREDDFLRSVVGQAVLAELRFLK 645

Query: 755  EKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGF 814
             KARI V     L G +DE G L+ GQ ++      + +     G   A  K      G 
Sbjct: 646  YKARIPVSKAVTLFGVMDETGFLQEGQIYVTYD---VADHLGATGIEAAPAK------GR 696

Query: 815  VVIAKNPCLHPGDIRILEAVDHPELH---HLYDCLVFPQKGDRPHTNEASGSDLDGDLYF 871
             ++ ++P LHPGDI+ +E V  P  H    L +C+VF  +G R   +  SG DLDGDLY 
Sbjct: 697  ALVTRSPALHPGDIQYVEMVTPPFGHALLELRNCIVFSSQGSRDLPSMLSGGDLDGDLYS 756

Query: 872  VTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVH 931
            V WD + IP   ++  P EY     K   R V Q D+  FF   M N+ LG I   H ++
Sbjct: 757  VIWDPDAIP--TRNLKPAEYPRISPKPNKRQVRQEDMANFFIDFMKNDVLGIIATRHQMY 814

Query: 932  ADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKL---YPDFM--------- 979
            AD    G LD  CI LAE+ + AVD+ K+G  V + AH  PK+     DF+         
Sbjct: 815  ADLKPAGTLDPECIRLAEMHSAAVDYSKSG--VPVEAHCIPKVPQARADFLVPAPTLALH 872

Query: 980  ----------------------GKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDIN 1017
                                   +  + +Y+SNKILGRL+R+  +      S  +EV   
Sbjct: 873  LSNDASYFERLTACISESETSPAQPGFATYQSNKILGRLFREIDEHRIWKESTQAEVTTR 932

Query: 1018 PVDIHYDTDLEVPES----VDFIAD-------AWNQKCSYDGQLNGLLEQYKVNREEELV 1066
                 +D  L+  ES    V+ I D       A N +  YD  L   L Q+ VN   ++ 
Sbjct: 933  TSGGIWDGLLKHVESDLSAVNIILDWETKLATAKNLRTEYDMALAETLRQFSVNPRGQVS 992

Query: 1067 TGHIWSMPKYNSRKQGELKERLKHSYSALRKE 1098
                +S    NS  +   + R+  +  A R E
Sbjct: 993  EVEAFSGRSLNSAGRQSRRHRVYSAKLADRME 1024


>gi|317158412|ref|XP_001826725.2| rna-dependent rna polymerase [Aspergillus oryzae RIB40]
          Length = 1206

 Score =  264 bits (675), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 202/646 (31%), Positives = 303/646 (46%), Gaps = 93/646 (14%)

Query: 409  DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYF 468
            ++ +V R+ +TPT+     PE+E  NR+LRK+ +  + F+RV F DE  +          
Sbjct: 393  NMTKVHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGE---------- 442

Query: 469  IAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FS 525
                  D+  N+      +F R   I++ G  + GR ++FL FS S LR  + WF   F 
Sbjct: 443  ------DLLFNANVDYKDIFGRFIDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWFSSPFV 496

Query: 526  EDGK--TSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEV------DPEL 576
            +D     +   I   +G+F+   + A+CAAR+GQ F+ T   V +    V      D   
Sbjct: 497  DDNGHMQTYFSIVSAIGKFSHITSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTS 556

Query: 577  PDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDG 636
            PD  R   VFSDG+G I+ ++   +   + L    P C +QIR  G KG++A        
Sbjct: 557  PDGSR---VFSDGVGAISREVVASIWADIPLKRGNPTC-FQIRLGGAKGMLAADSRLRTA 612

Query: 637  IRMSLRESMNKFQSHHT-TLEICSW-TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSML 694
            + + +R SM KF S     LEIC+  +R  P  LNRQ+I +L  +    + F+ MQ+  L
Sbjct: 613  V-IQIRPSMIKFDSEDMKNLEICNMASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEEL 671

Query: 695  SKLNQMLVDSDVAFEVL----TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQL 750
            ++L  + V +D     L     A C               N + +  LR ++  +   +L
Sbjct: 672  TRLQSITVSTDKTARFLKDKSVAECIGLYRLYRQCYWTRLNYKKDGFLRAIVEAVVLREL 731

Query: 751  WGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
              L+ KARI V  G  L G +DE G L+ G+ ++          F +   R+A       
Sbjct: 732  RLLKHKARIPVKKGMTLYGVIDETGFLQEGEVYV---------TFDRMEGRYAAPPG--- 779

Query: 811  IKGFVVIAKNPCLHPGDIRILEAV----DHPELHHLYDCLVFPQKGDRPHTNEASGSDLD 866
              G +++ ++P LH GDI+  + V    DHP  +H  +C+VF QKG R   ++ SG DLD
Sbjct: 780  -PGHILVTRSPALHCGDIQRAQNVIPPEDHPLRYH-RNCIVFSQKGSRDLPSKLSGGDLD 837

Query: 867  GDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICN 926
            GDLY V WD  L   S +++ P +Y    +  + R V   D+  FF + M ++ LG I  
Sbjct: 838  GDLYHVIWDPEL--ESVETFAPADYPRPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAI 895

Query: 927  AHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY-PDFMG----- 980
             H+V AD +  G  D +C LLA L + AVDF KTG  V M    +   Y PDF+      
Sbjct: 896  RHMVMADQAASGTRDTSCRLLAGLHSKAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGPQT 955

Query: 981  ----------------------------KEAYQSYKSNKILGRLYR 998
                                        +E Y+ YKS KILG+LYR
Sbjct: 956  RLYNKSKIGLEQHVSHANYDDDDDDADVEEPYRYYKSEKILGKLYR 1001


>gi|83775472|dbj|BAE65592.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 1188

 Score =  263 bits (673), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 202/646 (31%), Positives = 303/646 (46%), Gaps = 93/646 (14%)

Query: 409  DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYF 468
            ++ +V R+ +TPT+     PE+E  NR+LRK+ +  + F+RV F DE  +          
Sbjct: 393  NMTKVHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGE---------- 442

Query: 469  IAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FS 525
                  D+  N+      +F R   I++ G  + GR ++FL FS S LR  + WF   F 
Sbjct: 443  ------DLLFNANVDYKDIFGRFIDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWFSSPFV 496

Query: 526  EDGK--TSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEV------DPEL 576
            +D     +   I   +G+F+   + A+CAAR+GQ F+ T   V +    V      D   
Sbjct: 497  DDNGHMQTYFSIVSAIGKFSHITSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTS 556

Query: 577  PDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDG 636
            PD  R   VFSDG+G I+ ++   +   + L    P C +QIR  G KG++A        
Sbjct: 557  PDGSR---VFSDGVGAISREVVASIWADIPLKRGNPTC-FQIRLGGAKGMLAADSRLRTA 612

Query: 637  IRMSLRESMNKFQSHHT-TLEICSW-TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSML 694
            + + +R SM KF S     LEIC+  +R  P  LNRQ+I +L  +    + F+ MQ+  L
Sbjct: 613  V-IQIRPSMIKFDSEDMKNLEICNMASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEEL 671

Query: 695  SKLNQMLVDSDVAFEVL----TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQL 750
            ++L  + V +D     L     A C               N + +  LR ++  +   +L
Sbjct: 672  TRLQSITVSTDKTARFLKDKSVAECIGLYRLYRQCYWTRLNYKKDGFLRAIVEAVVLREL 731

Query: 751  WGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
              L+ KARI V  G  L G +DE G L+ G+ ++          F +   R+A       
Sbjct: 732  RLLKHKARIPVKKGMTLYGVIDETGFLQEGEVYV---------TFDRMEGRYAAPPG--- 779

Query: 811  IKGFVVIAKNPCLHPGDIRILEAV----DHPELHHLYDCLVFPQKGDRPHTNEASGSDLD 866
              G +++ ++P LH GDI+  + V    DHP  +H  +C+VF QKG R   ++ SG DLD
Sbjct: 780  -PGHILVTRSPALHCGDIQRAQNVIPPEDHPLRYH-RNCIVFSQKGSRDLPSKLSGGDLD 837

Query: 867  GDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICN 926
            GDLY V WD  L   S +++ P +Y    +  + R V   D+  FF + M ++ LG I  
Sbjct: 838  GDLYHVIWDPEL--ESVETFAPADYPRPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAI 895

Query: 927  AHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY-PDFMG----- 980
             H+V AD +  G  D +C LLA L + AVDF KTG  V M    +   Y PDF+      
Sbjct: 896  RHMVMADQAASGTRDTSCRLLAGLHSKAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGPQT 955

Query: 981  ----------------------------KEAYQSYKSNKILGRLYR 998
                                        +E Y+ YKS KILG+LYR
Sbjct: 956  RLYNKSKIGLEQHVSHANYDDDDDDADVEEPYRYYKSEKILGKLYR 1001


>gi|241244478|ref|XP_002402311.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
 gi|215496312|gb|EEC05952.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
          Length = 519

 Score =  263 bits (673), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 186/549 (33%), Positives = 275/549 (50%), Gaps = 56/549 (10%)

Query: 535  IKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPD-------IKRNGYVF 586
            I+ WMGRF    N+AK  ARMGQCFSST   V V   EV   +PD       + R  YVF
Sbjct: 1    IRDWMGRFDGIPNVAKRMARMGQCFSSTEQAVLVRKHEVR-MVPDMEGGAHPVSRKPYVF 59

Query: 587  SDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMN 646
            SDG+G ++  LA EV + +KL   P   A QIRYAG KG++   P   +   + LR SM 
Sbjct: 60   SDGVGMMSVPLAQEVYKVMKLKERPS--AIQIRYAGAKGMLCINPELPNQKLLYLRPSMQ 117

Query: 647  KFQSHHTT-LEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSD 705
            KF    +  LE+   +        R++ T L  ++  D       D  + +     V  +
Sbjct: 118  KFPCTSSDYLEVVKVS------APRKLHTPLGRVHYLDS------DRTIHQ-----VSGE 160

Query: 706  VAFEVLTAACAEQGNTAAIMLSAGFNPQTEPH-----LRGMLTC-------IRAAQLWGL 753
               E L   C +     + M+S      T+P         M++C       +      GL
Sbjct: 161  YHLEELGLGCIKDDAIMSRMVSTAMAVLTKPRYIISSCDIMVSCSCTMFNLVVVLHAAGL 220

Query: 754  REKARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVI 811
            R K RI +P    R ++G +D  GVL  GQ F+Q SE  +G   S+ G       K +VI
Sbjct: 221  RYKTRIALPVDRARNMLGVVDTTGVLRYGQVFVQCSE--MGARASQQGP-----PKCRVI 273

Query: 812  KGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYF 871
             G V++ K PCLHPGD+R   A+D P LHH+ DC+VFP +G RPH +E +GSDLDGD Y 
Sbjct: 274  TGQVLVTKCPCLHPGDVRKFTAIDEPRLHHVVDCIVFPGQGHRPHPDEMAGSDLDGDEYI 333

Query: 872  VTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVH 931
            V W+ +L+ P      PM ++    +     +   D+I+F   ++ N+++G + NAH+  
Sbjct: 334  VIWEPSLLFPGYNKQ-PMNFSDRNPEPERGEITINDMIQFLCNYIKNDSIGILSNAHLAW 392

Query: 932  ADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQ-SYKSN 990
            AD  E G     C+ +AE  +  +DF K+G+   +    +P  YPDFM K +++ SY+S+
Sbjct: 393  ADQEEEGIYSRRCLAIAEKISICLDFAKSGRTAYLRREERPMFYPDFMEKGSHKISYRSD 452

Query: 991  KILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQL 1050
            ++LG LYR  +     + +V S +    VD      L+VP    + + A      Y+ +L
Sbjct: 453  RVLGLLYRTCRSL---EAAVGS-LGHRHVDAGRCLALDVPGWQRYESAALAALADYNTRL 508

Query: 1051 NGLLEQYKV 1059
              +L QY +
Sbjct: 509  RRILNQYGI 517


>gi|367034442|ref|XP_003666503.1| hypothetical protein MYCTH_2071684 [Myceliophthora thermophila ATCC
           42464]
 gi|347013776|gb|AEO61258.1| hypothetical protein MYCTH_2071684 [Myceliophthora thermophila ATCC
           42464]
          Length = 1182

 Score =  263 bits (672), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 217/721 (30%), Positives = 340/721 (47%), Gaps = 103/721 (14%)

Query: 323 HYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLR--------GQSREVNVAALKHIY 374
           H    + F+++FL+ A+M  G ++   +S     L++        G    V+V A K ++
Sbjct: 315 HRANSLPFDLLFLLQALMTNGYLHPTTISALAQRLIQRFEAARKTGGPPPVSVDAFKKLF 374

Query: 375 SY-KWP-------VFDACKRLKLVQEW--LLKDPELYKGP--KQIDDIVEVRRLVITPTK 422
            +  +P       +F+    +  ++E   L+++    +    ++  D   + R+V+TPT 
Sbjct: 375 DWIDYPSPYGNPDMFEVDGIMAYLEESESLVREGASPRARIFEETQDRTRIFRVVVTPTS 434

Query: 423 AYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFS 482
                PE+E  NRVLRK+ + +  F+R  F DE                   D+  NS  
Sbjct: 435 VLLHGPELEPMNRVLRKFPNHS-YFIRAQFCDEAGN----------------DLFFNSKV 477

Query: 483 QKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAW----FFSEDGKTSVLDIKKW 538
              R++ R +SILS G  + GR +  L FS S LR  SAW    FF ++ +     I + 
Sbjct: 478 SLDRIYNRFKSILSDGIQIAGRVYKLLGFSHSSLRAHSAWLSAPFFHQNQRHGPDFIIET 537

Query: 539 MGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVD-PELPDIKRNGYVFSDGIGKITPD 596
           +G F D ++ A+ AAR+GQ FS T   +++    +    +PD++RNG VFSDGIG I+ D
Sbjct: 538 LGDFNDIRSPARRAARIGQAFSETPWALDLDEYGIQVSRIPDVERNGRVFSDGIGTISHD 597

Query: 597 LAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLE 656
               V + +      P C  QIR+AG KG++A  P   +G R+ +R+SM KF S+   LE
Sbjct: 598 ALSAVYKVIPKSKGFPTC-LQIRWAGAKGMLALDPLL-EGRRICIRDSMIKFASNDKQLE 655

Query: 657 ICSW-TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDS-DVAFEVLTAA 714
           IC   +R  P  LNRQ+I +L  +  PDE F ++Q + L +L  +     + A  +    
Sbjct: 656 ICDMASRPMPMVLNRQLIKILEDMKAPDEWFLNLQSTELQRLRGISATVYNTASFIRMQK 715

Query: 715 CAEQGNTAAIML---SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCL 771
            AE       +    + G + + +  LRG +  I   +L  L+ K+RI V  G  L G +
Sbjct: 716 VAESIKLHDFLRQTEAMGIDYRQDSFLRGAVEIILLRELRLLKHKSRIPVREGITLFGVM 775

Query: 772 DELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRIL 831
           DE G L+ GQ ++          F     R+A+  +     G +++ ++P LHPGD    
Sbjct: 776 DETGFLKEGQVYV---------TFDTEEGRYAQPPE----PGPLLVTRSPALHPGDW--- 819

Query: 832 EAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEY 891
                               G R   ++ SG DLDGD++ V WD  ++  +  ++ P +Y
Sbjct: 820 --------------------GSRDLPSQLSGGDLDGDVFHVIWDPEVVG-ALTTYQPADY 858

Query: 892 NAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELA 951
                  L RPV   DI  FF   M  + LG I   H++ AD  E G  D+NCI LAEL 
Sbjct: 859 GRTTPPELNRPVTLADIASFFVDFMKTDQLGVIAIRHMILADQKEDGTRDQNCIALAELH 918

Query: 952 ATA--VDFPKTGKIVTMPAHLKPKL------------YPDFMGKEAYQSYKSNKILGRLY 997
           ++A   DF   G  +T+  H K  +              D  G+  Y  YKS +I+G+LY
Sbjct: 919 SSAWRPDFLAPGPSITV--HDKSNISLDDHVVQEDSDSEDEEGQPRYGYYKSERIIGQLY 976

Query: 998 R 998
           R
Sbjct: 977 R 977


>gi|297737620|emb|CBI26821.3| unnamed protein product [Vitis vinifera]
          Length = 943

 Score =  263 bits (672), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 158/383 (41%), Positives = 213/383 (55%), Gaps = 24/383 (6%)

Query: 790  FLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFP 849
            F+ N    H   F       +++G VV+AKNPCLHPGD+RIL AVD P LHH+ DC+VFP
Sbjct: 569  FVPNGSGSHHDNF-------ILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFP 621

Query: 850  QKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDII 909
            QKG RPH +E SGSDLDGD+YFV WD +LIPP + +  PM+Y  A  K L   V   ++ 
Sbjct: 622  QKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQIN--PMDYTPAPTKVLDHDVMIEEVE 679

Query: 910  EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAH 969
            E+F  ++ N+ LG I NAH V AD     AL   C  LA+L + A++FPKTG    +P H
Sbjct: 680  EYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFH 739

Query: 970  LKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEV 1029
            L  K YPDFM K    +Y+S  ++G+L+R+ KD    +  V S      +   YD D+EV
Sbjct: 740  LHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQ-SYDADMEV 798

Query: 1030 PESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPK-YNSRKQGELKERL 1088
                D++ DA+  K  YD +L  L++   +  E E+++G I  M K ++ RK  E    +
Sbjct: 799  DGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSFDKRKDAEA---I 855

Query: 1089 KHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQ 1148
              +  +LRKE R  F KM S       D+  A+    ASAWY VTYHP +     +    
Sbjct: 856  ALAVRSLRKEARTWFNKMGSGT-YAGADDVYAI----ASAWYHVTYHPYYWGCYNEGMYH 910

Query: 1149 DSARSVVLLSFAWIANDYLARIK 1171
            D       LSF W   D L +IK
Sbjct: 911  DH-----FLSFPWCVYDKLIQIK 928



 Score =  218 bits (556), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 166/499 (33%), Positives = 259/499 (51%), Gaps = 59/499 (11%)

Query: 178 IAFALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDI 237
           + F  + S E   + CE   +  +RE     Q ++F    +L+QL  +P+++    + D+
Sbjct: 101 LHFGYQMSNERFCLSCENIWQIQLREPR--GQNTKF----LLIQLLDAPQIY----EKDV 150

Query: 238 LVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVD 297
             L  F    DD  W+R  DFTPS +IG+ ++  + +   H  +L        E   +  
Sbjct: 151 SALSYFKETPDDQ-WVREIDFTPSCSIGQSSALCLELP--HGSQLPN----FCENFARYK 203

Query: 298 SLSRPITIREEPDFE-----VPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSD 352
              R   +     F      VP+  P         + F+I+F +N ++  G ++   L  
Sbjct: 204 ENDRKFILESGASFSGNLHLVPIVGP----PQGSNLPFKILFKINTLVQNGCLSGPTLDT 259

Query: 353 SFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQI----- 407
           +FF  +  Q   +N++ ++H     + + + C        WL +    Y   KQ+     
Sbjct: 260 NFFRWVDPQ--RINISFIEHALEKLYYLEECCYE---PVRWLHEQYRTYIS-KQVAGSPA 313

Query: 408 ----DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNAN 463
                 +V VRR+ ITP K Y   PEV +SNRVLR Y +  D FLRV+F+DE  + +++ 
Sbjct: 314 ISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHST 373

Query: 464 VLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF 523
           V+S           +++  ++T V++R+ SIL  G  +  +KF FLA SSSQLRD SAW 
Sbjct: 374 VIS---------PRMSNEGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWM 424

Query: 524 FSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK-- 580
           F+     +  DI+  MG F+  +N+AK AAR+GQ FSS+  T++V   E++  +PDI+  
Sbjct: 425 FASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEI-IPDIETH 483

Query: 581 RNG--YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR 638
           R+G  YVFSDGIGKI+ +LA  VA K     N  P A+QIRY G KGVVA  P      +
Sbjct: 484 RDGTTYVFSDGIGKISAELAHRVAIKCGCK-NSTPSAFQIRYGGYKGVVAVDPTSSR--K 540

Query: 639 MSLRESMNKFQSHHTTLEI 657
           +SLR+SM K++S +T L++
Sbjct: 541 LSLRKSMFKYESENTNLDL 559


>gi|241620373|ref|XP_002408656.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
 gi|215503015|gb|EEC12509.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
          Length = 529

 Score =  262 bits (669), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 186/537 (34%), Positives = 272/537 (50%), Gaps = 47/537 (8%)

Query: 548  AKCAARMGQCFSSTYATVEVPP--TEVDPEL------PDIKRNGYVFSDGIGKITPDLAM 599
            +K  AR+GQ FS +   V VP   T VD ++      P IK N   FSDG+G+I+P +  
Sbjct: 15   SKYMARLGQAFSQSMGYVTVPQACTRVDRDILLKGRKPGIKYN---FSDGVGRISPSVLA 71

Query: 600  EVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICS 659
             V   L  +  P   A QIRY GCKG++   P   +G ++  R+SM K+ S    L I  
Sbjct: 72   RVHAALPAEGKP--SAIQIRYGGCKGMLVLDPTL-EGDQIVFRDSMFKYPSQSEELFILK 128

Query: 660  WTRFQPGFLNRQIITLLS-------TLNVPDEMFWSMQ-DSMLSKLNQMLVDSDVAFEVL 711
             +R +   LNR +IT+LS         ++ D +F  MQ D +   L+ +  D        
Sbjct: 129  TSRPRVVKLNRPMITILSQKMTRSGVQDIEDGVFMRMQQDCLEPYLDSLFNDKG------ 182

Query: 712  TAACAEQGNTAAI----MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GR 765
            TAA  +  ++  +    +  AG +   EP  R +L  +    L  L++K  I VP   GR
Sbjct: 183  TAALLQSESSLRMPYRELAEAGLDLHAEPFFRSLLWALHHRCLKDLKDKMNILVPPRFGR 242

Query: 766  WLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHP 825
             + G LDE   L+ GQ +++ S   L        S++      ++  G V++ KNPC+HP
Sbjct: 243  TMFGVLDETATLQYGQVYVRYSTD-LDRFGPDDESQYRLCTTFRLRAGRVMVTKNPCIHP 301

Query: 826  GDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS 885
            GDIR+LEAVD P L H+ DC+VFPQ G RPH +E +GSDLDGD Y V W E L+   K++
Sbjct: 302  GDIRLLEAVDVPALSHIRDCVVFPQIGKRPHPDEMAGSDLDGDEYSVIWYEPLL--FKRN 359

Query: 886  WPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCI 945
              PM++ ++EA      V   D+++F   ++VN+ +G + +AH+  AD  + G   + C+
Sbjct: 360  DDPMDFYSSEALEKEGTVQVEDMVDFMCTYIVNDIVGLMGSAHLAWADLLKQGVKSQRCL 419

Query: 946  LLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQ-SYKSNKILGRLYRQSKDAY 1004
            +LA+  +  VDF KTG    +    KP  YPDFM K A + +Y S + LG LYR  K   
Sbjct: 420  VLAKKCSECVDFAKTGSSTRLAQSEKPPRYPDFMEKHAEKYTYPSKRALGLLYRNLKGMV 479

Query: 1005 DEDISVSSEVDINPV-DIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVN 1060
             +           PV D+  D  L VP   +F+  A      Y   L  +L  Y V 
Sbjct: 480  AD--------SAGPVGDVRPDRRLLVPGREEFVEGAREALREYKLALCSILTSYGVG 528


>gi|341885452|gb|EGT41387.1| hypothetical protein CAEBREN_32717 [Caenorhabditis brenneri]
          Length = 1562

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 218/778 (28%), Positives = 361/778 (46%), Gaps = 128/778 (16%)

Query: 409  DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYF 468
            + V+V ++++TP++   + PEV + NR++R++    D  LR  F D+ L           
Sbjct: 675  NCVQVAKVIVTPSRILLMAPEVMMVNRIVRRFG--PDYALRCVFRDDNL----------- 721

Query: 469  IAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE-- 526
                                              GR      +S+SQ+RD   + ++   
Sbjct: 722  ----------------------------------GR------WSNSQMRDQGCYLYAPRV 741

Query: 527  ---DGKTS--VLDIKKWMGRFTDK-NIAKCAARMGQCFSSTYATVEVPPTE--VDPELPD 578
                G+ S  V +I+KWMG F +  ++ K  +RMGQCF+    TV +      V+P++  
Sbjct: 742  DPGTGRVSGTVEEIRKWMGDFREAVSVPKMMSRMGQCFTQAQPTVRLERRHWIVEPDVEG 801

Query: 579  IKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR 638
                 Y FSDG G+I+  LA  + + L+L   P    +Q+R+ G KG++   P   D I 
Sbjct: 802  GLSGKYCFSDGCGRISVKLANHITKILELKETP--ACFQVRFKGFKGILVIDPTIDDIIG 859

Query: 639  MS---LRESMNKF-----QSHHTTLEICSWTRFQPGFLNRQIITLLSTLN---------- 680
            M     R+S  KF           LE+  +    P  LNR  IT+L  ++          
Sbjct: 860  MPKVVFRKSQQKFGEGGGDQQDEYLEVVKYAMPSPVCLNRPFITILDQVSAKQSASSHRR 919

Query: 681  VPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRG 740
            + + + + ++  + S L+ ML++ + A E L        +       AGF    +P +R 
Sbjct: 920  ITNRIHYYLERELCS-LSNMLLNENQAAEELVNRTNLPIDWNKASKHAGFRLSKDPLIRS 978

Query: 741  MLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKH 798
            ML  I    +     KA+IF+P   GR + G +DE G+L+ GQ FIQ S+          
Sbjct: 979  MLFSIYRYNIIHHISKAKIFLPPDLGRSMYGVVDETGLLQYGQVFIQYSQ---------- 1028

Query: 799  GSRFAETKKLQVIK-GFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHT 857
                 +T    ++K G V+I KNPC  PGD+R+ EAV  P L HL D +VFP+ G RPH 
Sbjct: 1029 --SIRQTSATPILKTGKVLITKNPCHVPGDVRVFEAVWQPALAHLVDVVVFPRHGPRPHP 1086

Query: 858  NEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMV 917
            +E +GSDLDGD Y + WD+ ++    +    M Y ++ A    +     D++EFF +++ 
Sbjct: 1087 DEMAGSDLDGDEYSIIWDQEMLLDYNEE--AMIYPSSTAPEEDKEPTTDDMVEFFLRYLQ 1144

Query: 918  NENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKP-KLYP 976
             +++G + NAH+ +AD   +G   ENC  +A   A AVDFPK+G      A  +  ++ P
Sbjct: 1145 QDSIGRMSNAHLTYADL--HGLFHENCRNIALKCAVAVDFPKSGVPAEPLASFEQCEMTP 1202

Query: 977  DFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDF- 1035
            D+M       Y S ++ G+L+R+++    E++    E   +  +  YD  +  P+  D  
Sbjct: 1203 DYMATGGKPMYYSPRLNGQLHRKARKV--EEVLEEYETRGSIFEGEYDKII-CPDDADVF 1259

Query: 1036 ------IADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPK-----------YNS 1078
                  +  A   +  Y  ++  LL++Y +  E  +V+GH  S+ +           Y++
Sbjct: 1260 FGSEAKLVQAMMIRDEYIDRMQQLLDEYGIEDEASVVSGHAASIKRLAGMERDDYSFYHT 1319

Query: 1079 RKQGELK-ERLKHSYSA-LRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTY 1134
             K  EL+ E+L H + A   +EF      + +D   +  +   A+ E K   WY V+Y
Sbjct: 1320 DKIVELRYEKLYHVFRAKFFEEFGGEAAHLVNDGSKMRLNCTKAMRE-KVRQWYFVSY 1376


>gi|429863873|gb|ELA38280.1| RNA-dependent RNA polymerase [Colletotrichum gloeosporioides Nara
            gc5]
          Length = 1308

 Score =  261 bits (666), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 213/665 (32%), Positives = 314/665 (47%), Gaps = 94/665 (14%)

Query: 403  GPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNA 462
            GP   +    V + ++TPT+     PE+E  NR+LRK+++  D F+RV F DE       
Sbjct: 430  GPDVSNHHAWVFKAMVTPTRVTLHGPEMEPLNRILRKHRNHTDYFMRVQFCDEDGT---- 485

Query: 463  NVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAW 522
                        D+  N       VF+R +++L+ G  + GR + FL FS S LR  +AW
Sbjct: 486  ------------DLWFNPRVNYEDVFERYKNVLNKGIQVAGRIYQFLGFSHSSLRSHAAW 533

Query: 523  F---FSEDGKTSVL--DIKKWMGRFTDKNI-AKCAARMGQCFSSTYATVEVPPTEVDP-E 575
            F   F +D     L   I K +G F    I AKCAAR+GQ FS T A + +  +++    
Sbjct: 534  FMAPFVDDSGEMQLYRHIIKSLGDFEHIQIPAKCAARIGQTFSETPAFISLTDSDISAWN 593

Query: 576  LPDIKR----NGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVAC-- 629
            +PDIK     +  VFSDG+G I+ +    +  +L      P C  QIR+ G KG+++   
Sbjct: 594  IPDIKSSIGGDDRVFSDGVGTISREALELIWPRLPRGSLIPTC-LQIRWGGVKGMLSLDT 652

Query: 630  -WPAKGDGIRMSLRESMNKFQSHHT-TLEICSW-TRFQPGFLNRQIITLLSTLNVPDEMF 686
              P +   IR   RESM KF S  T  LEIC   ++     LNRQ+I +L  L V ++ F
Sbjct: 653  RLPGRVMCIR---RESMEKFPSQDTENLEICGGASKPLKLVLNRQMIKILEDLGVRNDFF 709

Query: 687  WSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSA--------GFNPQTEPHL 738
              +Q + L +L  +  D+      L      QG      L +        G + + +  L
Sbjct: 710  LRLQKTELDRLRAVTADAYNTGTFLHM----QGIGLNCFLPSFIKSLDKYGIDYRRDDFL 765

Query: 739  RGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKH 798
            R ++  +   +L  L+ KARI VP G  + G +DE G L  G+ +I           S  
Sbjct: 766  RTVVQNVVLQELRLLKHKARIPVPKGVTVFGVMDETGFLREGEVYIAYDTYRRPGRTSID 825

Query: 799  GSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH---HLYDCLVFPQKGDRP 855
            GS         +  G V++ ++P LHPGDI++++    P  H   +L +C+ F Q G R 
Sbjct: 826  GS---------LRDGPVLVTRSPALHPGDIQLVKMRTPPAGHPLRNLRNCIAFSQFGRRD 876

Query: 856  HTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKH 915
              ++ SG DLDGDLY + WD + +P  K ++   +Y       L R V++ D+  +F   
Sbjct: 877  LPSQLSGGDLDGDLYNIIWDRDAMP--KVTYKAADYPRVTPAALGRTVEREDMANWFVDF 934

Query: 916  MVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTM--------- 966
            M ++ LG I   H+V +D    G L  +C+ LA L +TAVDF KTG  V           
Sbjct: 935  MQSDCLGLIATRHLVVSDQDPNGTLGNDCLTLAGLHSTAVDFSKTGIPVDTKEIPKAPRF 994

Query: 967  ---------PAHLKPKLYPDFMGKE------------AYQSYKSNKILGRLYRQ--SKDA 1003
                     PAH+  +   +F+GK              +Q YKS KILG LYR    K  
Sbjct: 995  RPDFLAPAPPAHIFDRNEIEFIGKNETLEEDDEDMLPPHQYYKSEKILGILYRNVDEKHI 1054

Query: 1004 YDEDI 1008
            + EDI
Sbjct: 1055 WTEDI 1059


>gi|429964430|gb|ELA46428.1| hypothetical protein VCUG_02106 [Vavraia culicis 'floridensis']
          Length = 2289

 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 206/670 (30%), Positives = 306/670 (45%), Gaps = 126/670 (18%)

Query: 409  DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYF 468
            D   +R + + P    C+ P+  LSNR+LR + ++    +R+TF D    T + + + Y 
Sbjct: 739  DTQPIRTVHVHPLAIVCMYPKNNLSNRILRNFSNM----IRITFKD----TKDESTMEY- 789

Query: 469  IAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDG 528
                                  +R I+S G  +  R + F+A SSSQLR  SAWF S   
Sbjct: 790  ----------------------IREIMSNGITI-DRPYYFVATSSSQLRANSAWFISPYR 826

Query: 529  KTSVLD----IKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG- 583
            K +VL     ++ WMG     NI K   R+G   SST+   E+     + ++     +G 
Sbjct: 827  KNNVLIGSDYVRNWMGVINCDNIGKYMIRVGLGLSSTFNMFEIVDYVEEDDIVSYGNSGS 886

Query: 584  ------------------------------------------------YVFSDGIGKITP 595
                                                            YV++DGIG+I+ 
Sbjct: 887  VSYGNSGSVSTSNSGSVSTSSNKNNNSSTSNSSTINTTNAITNNVNDEYVWTDGIGRISN 946

Query: 596  DLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTL 655
             +A  VA+KLKL     P A+QIR+AG KGV+       D   + LR+SM KF+S +  L
Sbjct: 947  RVADMVAKKLKL--TSTPTAFQIRFAGYKGVLVRANIPHD---LMLRKSMRKFKSTYNVL 1001

Query: 656  EICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAAC 715
            E+ S+++    +LNRQII +L  L VP   F  +Q+  L  + + +  S +      +  
Sbjct: 1002 EVVSYSQSIECYLNRQIIMILEGLGVPKHNFICLQNEYLMHMYRAINHSLIGKYCRISGV 1061

Query: 716  AEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKA----------RIF----- 760
            A     +  +L   F    E   +G +       L G+ ++           RI+     
Sbjct: 1062 ALVDRMSGALLGRLFR---EMCAKGRIFVKNGIVLMGVIDEEGVLGENEVFLRIYEDDGD 1118

Query: 761  VPAGRWLMGCLDELGVLEGGQ------CFIQVSEPFLGNCFSKHGSRFAET-----KKLQ 809
            V  GR      +E+G  E  +          V    +G   S        T     +   
Sbjct: 1119 VSGGRSKRMRSNEIGAEEMRKKELFERALSVVDRSGVGTADSSADDINTSTGGGVLRDDG 1178

Query: 810  VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDL 869
            V+ G  ++AKNPCLHPGDIR ++ V   EL H  + LVF +KG RP  N  SGSDLDGDL
Sbjct: 1179 VVVGGAIVAKNPCLHPGDIRKVQCVYKKELMHYKNVLVFSKKGRRPVFNMCSGSDLDGDL 1238

Query: 870  YFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHV 929
            YFV+WD  LIPP +    P  Y ++   +    V Q D++ FF +    + LG I NAH+
Sbjct: 1239 YFVSWDARLIPPIEHF--PQNYQSSSYLSKEHIVAQ-DMVNFFTRFAKEDELGKISNAHL 1295

Query: 930  VHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKS 989
            V++D   +G  D   + LA L +  VDFPKTG I  +P +L+P  YPDFM  E  +SY+S
Sbjct: 1296 VYSD--VHGITDPQALKLAYLFSMGVDFPKTGYIARLPQNLEPYEYPDFM--ERMRSYES 1351

Query: 990  NKILGRLYRQ 999
             +++G +YR+
Sbjct: 1352 VRVMGMMYRR 1361


>gi|115458854|ref|NP_001053027.1| Os04g0465700 [Oryza sativa Japonica Group]
 gi|113564598|dbj|BAF14941.1| Os04g0465700, partial [Oryza sativa Japonica Group]
          Length = 377

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 158/397 (39%), Positives = 219/397 (55%), Gaps = 38/397 (9%)

Query: 802  FAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEAS 861
            + +  K   + G V I KNPCLHPGDIR+LEA+  P+L  + DCLVFPQ+G+RPH NE S
Sbjct: 3    YNDDGKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECS 62

Query: 862  GSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENL 921
            G DLDGDLYF+TWD+ LIP  +K   PM+Y A   + +   V   +I + F  +M+N++L
Sbjct: 63   GGDLDGDLYFITWDDKLIP--EKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSL 120

Query: 922  GTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGK 981
            G I  AH++HAD S   A    C+ LA L + AVDF KTG    MP  L+P+ YPDFM +
Sbjct: 121  GAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMER 180

Query: 982  EAYQSYKSNKILGRLYRQS----KDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIA 1037
                 Y SN +LG+LYR +    + + D     SS    +P    YD DLEVP S +F+ 
Sbjct: 181  WEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPT---YDPDLEVPGSDEFLQ 237

Query: 1038 DAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKY---NSRKQGELKERLKHSYSA 1094
             A      Y+ +L  L+  Y+   E+E++TG+I +   Y   ++++  E+K+R+  +  A
Sbjct: 238  AAEEYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDA 297

Query: 1095 LRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSV 1154
            L +E R           L S  E++A   R ASAWY+VTYHP            D  R  
Sbjct: 298  LHREARGWL--------LSSRKEEDA--SRMASAWYRVTYHP------------DRRRGK 335

Query: 1155 VLLSFAWIANDYLARIK----IRCREMANIDTSKPVN 1187
               SF WIA D L  IK    +R R   + D++  V 
Sbjct: 336  RFWSFPWIACDNLLAIKASSQLRRRRQKDDDSTAVVQ 372


>gi|154272513|ref|XP_001537109.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150409096|gb|EDN04552.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1209

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 247/859 (28%), Positives = 368/859 (42%), Gaps = 149/859 (17%)

Query: 217 AILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTP---------SGAIGRC 267
           +I +   ++PR+ Y+T   D+L     DML     W+R                   G C
Sbjct: 205 SITITADTAPRL-YKTDPTDVLAAGLHDMLQIQQKWMRKRPLKTRVGHFGDEHEALAGTC 263

Query: 268 NSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMS---DPFFCIHY 324
             YR  + S     L  V     ER   +  ++R +  R +  ++VP S     F     
Sbjct: 264 FVYRFLLKSS--DDLVVVRDLANER--HIPDIARWVDHRAK--YDVPYSTLMQRFMAFLS 317

Query: 325 EEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG----QSREVNVAALKHIYS-YKWP 379
           +E + + + F +  ++  G I+  + + SF   +R     +  ++ V AL  + S  KWP
Sbjct: 318 QENMPYRVRFQLQKLVWNGDISPAK-AISFASRVRATLVIEDLDIVVRALMRLSSDVKWP 376

Query: 380 VFDA----------CKRLKLVQEWLLKDPELYKGPKQID-DIVEVRRLVITPTKAYCLPP 428
             D            +  K   E   ++ E+ +  + ++ + + + R  ITP   Y   P
Sbjct: 377 SPDVEASEVDVPALVEVFKNALESTAREREMTRSNRPMNPNHISIHRAQITPCGTYLDGP 436

Query: 429 EVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVF 488
             E  NRVLR Y    D FLRV F+DE    +  +  +        D+   S        
Sbjct: 437 HAETKNRVLRHYSSHVDHFLRVEFVDETGDPVRYDPRASI------DMIFES-------- 482

Query: 489 KRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVL----DIKKWMGRFTD 544
            R +++L  G  + GRKF FL FS S LR  + WF +   K  +L     I + +GRF  
Sbjct: 483 -RFKTVLKSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNASTIIQNLGRFDH 541

Query: 545 -KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQ 603
            ++ AK AAR+GQ FS T  ++ +    +     D++RNG VFSDG+G            
Sbjct: 542 IQSPAKQAARIGQTFSDTLTSIPISDKYISIG-KDVERNGRVFSDGVG------------ 588

Query: 604 KLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHT----TLEIC- 658
                               KG+++   ++  G  + LR SM KF   ++     +EIC 
Sbjct: 589 -------------------AKGMISL-DSRKKGKSLVLRPSMIKFHLPNSYNAFNIEICG 628

Query: 659 SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL--TAACA 716
           S  +  P FLN Q+I +L  L V + +F  +Q   +S+L      +  A   L  T    
Sbjct: 629 SGLKPLPFFLNAQMIKILEDLGVDESVFLRLQADEISRLRATATSTAKAARFLEDTNIAK 688

Query: 717 EQGNTAAIMLSAGFNPQ--TEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDEL 774
             G    I +  GF  +   +  LR ++      +L  L+ +ARI VP    L G +DE 
Sbjct: 689 SVGLPWLINVLEGFGLRHSNDEFLRRVMELSVLIKLRDLKYRARIRVPNAVTLFGIMDET 748

Query: 775 GVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAV 834
           G+L+ G+ F            S  G R        ++   VV+ ++P +HPGD++I  AV
Sbjct: 749 GILKEGEVFC--------TSLSDKGVREV------LVNPRVVVTRSPAMHPGDVQIARAV 794

Query: 835 DHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEY 891
           D P    L  L++C+ F Q G R   +  SG DLDGDLY V +D  L+P  K+   P EY
Sbjct: 795 DVPADSPLRQLHNCIAFSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLLP--KRIARPAEY 852

Query: 892 NAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELA 951
              + K L R V + DII+FF   M  + LG I   H   AD    G  D  C+LLAEL 
Sbjct: 853 PRVQEKVLGRTVVREDIIDFFVTFMQQDQLGRIATIHQALADQRPLGTFDPECLLLAELH 912

Query: 952 ATAVDFPKTGKIVTMPAHLK-PKLYPDFMG------------------------------ 980
           +TAVDF KTG  V +    K P   PDF                                
Sbjct: 913 STAVDFSKTGVPVDLARIPKFPSCRPDFQAPSPRIRIAENLSLLEGDMDAVQDGGDEDDD 972

Query: 981 -KEAYQSYKSNKILGRLYR 998
            + A + YKS  ILG+LYR
Sbjct: 973 ERPAVRFYKSENILGKLYR 991


>gi|392575092|gb|EIW68226.1| hypothetical protein TREMEDRAFT_74213 [Tremella mesenterica DSM
           1558]
          Length = 1004

 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 187/609 (30%), Positives = 305/609 (50%), Gaps = 78/609 (12%)

Query: 407 IDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLS 466
           +  +V +R + +TPT+     P  E SN V R+Y    D  +RV F DE  +        
Sbjct: 335 LSHLVLIRTVQVTPTRLLIGAPTPEPSNSVTRRYAGKIDSIIRVQFSDEEDRIF------ 388

Query: 467 YFIAPIVRDITLNSFSQKTR--VFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF 524
                 V+D T    SQ+    V  RVR  L  G  + GR++  +A SSSQ ++ + WF 
Sbjct: 389 ------VQDYTKQVDSQRPDLGVMARVRRALRWGLVVGGRRYLPVASSSSQQKEHAMWFI 442

Query: 525 SEDGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGY 584
            ++ +  +L++++WMG+  +  IAK AARMG  FS T   VE+   ++  ++PD++RNG+
Sbjct: 443 -DNKEIDMLELQRWMGQVDETIIAKHAARMGLPFS-TSRIVEIN-VDIGLQIPDVERNGH 499

Query: 585 VFSDGIGKITPDLAMEVAQKLKL--DVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLR 642
            F+DG+G    ++  E A+ L     +N  P A Q R  G KG++A WP +     + +R
Sbjct: 500 CFTDGVGLAGFEVMREAARALGFREGINSTPSAIQFRLGGAKGMLAFWPGRVKDHEVKMR 559

Query: 643 ESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLV 702
           +SM KF+S    L +    RF         I ++    +P+++   + +  ++ +  +  
Sbjct: 560 KSMVKFKSGLKDLNV---VRF---------IMIMCANGIPEQLMIDIFNDAVASIKGL-- 605

Query: 703 DSDVAFEVLT-------AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLRE 755
              VA + L+       + C+E    A  ++ AGF+    P +  + + +    L  L+ 
Sbjct: 606 RERVATKTLSRDDHKLISTCSEFPLLA--LIKAGFH--ENPMILDICSIVETRALQDLKW 661

Query: 756 KARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFV 815
           +AR+ +P G +L+G  DE G L+ G+ F Q  E              ++     +++  V
Sbjct: 662 RARVRLPTGVFLIGIADETGTLKEGEVFCQYQE--------------SDDTPPVIVESEV 707

Query: 816 VIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 875
           ++ + P LHPGD+R   AVD+P L HL + LVF  +G+R   N   G DLDGD       
Sbjct: 708 IVCRAPALHPGDVRRAFAVDNPYLRHLKNVLVFSVQGERDLPNMLGGGDLDGDAPQGFPS 767

Query: 876 ENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMV-----NENLGTICNAHVV 930
           + L   S  + P  +  A           QR+    F   MV     N+ LG + N H+ 
Sbjct: 768 DELYGSSSATGPKGDSTAP----------QRE----FCSVMVTDDSQNDVLGQVDNCHLA 813

Query: 931 HADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAY-QSYKS 989
            +D  + G    +C+ L+E+ +TAVDFPKTG+   +   ++PKL+PDFM K+A  ++Y+S
Sbjct: 814 RSDWEDKGPFHPDCLELSEIHSTAVDFPKTGQAAILDPSMRPKLWPDFMDKDATKKTYES 873

Query: 990 NKILGRLYR 998
            KILG L+R
Sbjct: 874 QKILGILFR 882


>gi|393912446|gb|EFO21905.2| RNA dependent RNA polymerase [Loa loa]
          Length = 1514

 Score =  259 bits (662), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 242/852 (28%), Positives = 392/852 (46%), Gaps = 159/852 (18%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V +R+++ TP +   LPPEV ++NRV+R + +  +  LR  F D+  Q +     S   A
Sbjct: 460  VLIRKVMATPLRLLLLPPEVMMTNRVIRHFGE--EYALRCVFRDDNGQRLVPKEFSRGRA 517

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE---- 526
               + + +     +T         L  G ++  R + FLA+S+SQ+RD   + +S+    
Sbjct: 518  LQDQSLIIPDLIYRT---------LGTGLHIASRHYQFLAWSNSQMRDGGCYMYSDAVVN 568

Query: 527  ---DGKT--SVLDIKKWMGRFT-DKNIAKCAARMGQCFSSTYATVEVPPTE--------- 571
                G+   +V DI++WMG FT  K++ K  +RMGQCF+    T+ +   +         
Sbjct: 569  DEVHGQMICNVEDIRRWMGDFTASKSVPKMMSRMGQCFTQAQPTIMLEKNDWKVEDDIMG 628

Query: 572  --VDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQ-----------I 618
              V PE  ++    + FSDG+G+I+   A  +A+   LD++P P  YQ           +
Sbjct: 629  GIVHPETGEV----FNFSDGVGRISKKYADRIAE--VLDLHPTPSCYQEDEESAAEIEVV 682

Query: 619  RYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLST 678
            +Y+    V    P       + + + +++ QS H   +ICS           +I +LL  
Sbjct: 683  KYSMPAPVCLSRPL------IMILDQVSEKQSRHLHKKICS-----------RIHSLL-- 723

Query: 679  LNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHL 738
                        +  L+KL+ M+ D + A E L++  +   +   +  S+G     EP  
Sbjct: 724  ------------ELELNKLSAMMFDENDAAEELSSRMSLPIDFHQLH-SSGITFTNEPFF 770

Query: 739  RGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFS 796
            R +L  I    +     K++IF+PA  G  + G +D+ G+L+ GQ FIQ S         
Sbjct: 771  RSLLIAIHRYNIKLHLSKSKIFLPASMGHTMYGVVDDTGLLQHGQVFIQYSPSI------ 824

Query: 797  KHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPH 856
                R+   KK+ +  G V++ KNPC   GD+R+ EAV    L HL D +VFP+ G RPH
Sbjct: 825  ----RYVSGKKI-IYTGPVMVTKNPCHVAGDVRMFEAVYQDALSHLCDVIVFPRYGPRPH 879

Query: 857  TNEASGSDLDGDLYFVTWDENLIPPSKKS---WP---PMEYNAAEAKTLTRPVDQRDIIE 910
             +E +GSDLDGD Y V +D+ L   + +    +P   P EY+         P    D+I+
Sbjct: 880  CDEMAGSDLDGDEYTVIFDKELFFENNEQAMFFPKSIPTEYDT--------PPTTGDMID 931

Query: 911  FFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG-KIVTMPAH 969
            FF K++  +++G + NAH++  D    G   E C  +A   A AVDFPKTG +   +  H
Sbjct: 932  FFLKYLSQDSIGRMSNAHLIMCD--RLGLFHEICDSIARKCAVAVDFPKTGVQAKPLILH 989

Query: 970  LKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLE- 1028
             +    PD+M      SY+S ++LG+LYR+++   D    +S  V       +YD  L  
Sbjct: 990  EQCDSIPDYMQNTIKPSYRSKRLLGQLYRKAQKVED----ISEAVQGAKFADYYDPQLYD 1045

Query: 1029 ---VPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPK---------- 1075
                 E    I  +   +  Y  ++  LL++Y ++ E  +++GH  ++ +          
Sbjct: 1046 ESLFHEQPKLIQRSLRLRNEYYSRIQQLLDEYGISDEASVISGHSLAIKRIVEMEKDDYS 1105

Query: 1076 -YNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEK-------NALFERKAS 1127
             Y+S K  EL  R    ++  R+EF   F++   + + +S D         N     KA 
Sbjct: 1106 FYHSDKIVEL--RYSRIFAYFRREF---FKEFGEESDFVSVDALGKRGMRWNMALITKAK 1160

Query: 1128 AWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKP-- 1185
            AWY VTY   +   S               SF WI  D L  IK   R++A +  S P  
Sbjct: 1161 AWYAVTYASAFRSSS------------EFRSFPWIVWDILLIIK---RQIALMLKSPPPL 1205

Query: 1186 VNYLARYVADRI 1197
            VN L  ++   I
Sbjct: 1206 VNPLVIHLTQAI 1217


>gi|393904650|gb|EJD73758.1| RNA dependent RNA polymerase [Loa loa]
          Length = 1022

 Score =  259 bits (661), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 213/753 (28%), Positives = 359/753 (47%), Gaps = 117/753 (15%)

Query: 516  LRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFS-STYATVEVPPTEVDP 574
            +RD   +F+ +        I++ +G+F   NI K  +RMGQCF+ +   TV +   + + 
Sbjct: 1    MRDNGCYFYDDGKGGQAHKIREQLGKFDRCNIPKMMSRMGQCFTQAKRCTVTLKRHKYNK 60

Query: 575  ELP-----DIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVAC 629
                    D  +  Y+FSDG GK++ + A ++A  + L  + P C YQIR+ G KGV++ 
Sbjct: 61   TYDVIGGRDTNQAFYIFSDGAGKVSKEFAEKIALDIGLGTSVPSC-YQIRHRGIKGVLSV 119

Query: 630  WPA---------------------KGDGIRMSLRESMNKFQS-HHTTLEICSWTRFQPGF 667
             P+                     K + + +  R S +KF++     +EI  ++      
Sbjct: 120  DPSLDQRKHWAAANNVVDNNKMTNKQNDLAVLFRPSQDKFKAPRDEYIEIVKYSTPTSVC 179

Query: 668  LNRQIITLLSTLN------VPDEMFWSMQDSM---LSKLNQMLVDSDVAFEVLTAACAEQ 718
            LNR +I++L  ++      V + +   + D +   +++L  ML+  +   E L      +
Sbjct: 180  LNRPMISILDQVSGMQGFSVHERIRKRIHDLLDIQMTQLADMLMSEEKCREKLNE-LPWR 238

Query: 719  GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGV 776
             N + + L+ GF    EP  R +L       L  L  K +I VP   GR + G +DE G 
Sbjct: 239  VNVSRLTLARGFALTQEPFFRSLLRANIKCTLKKLIAKVQIQVPPHFGRSMFGVMDETGQ 298

Query: 777  LEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDH 836
            L+ GQ F+Q +        SK  ++        ++ G V++ KNPC+  GD+R+ EAVD 
Sbjct: 299  LQWGQVFVQCTRSIWLKTPSKSAAKI-------ILVGKVMLTKNPCIVAGDVRVFEAVDI 351

Query: 837  PELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEY--NAA 894
            PELHHL D +VFPQ G RPH +E +GSDLDGD Y V WD  L+   + + PP+++  +A+
Sbjct: 352  PELHHLVDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDPELM--FEHNEPPLDFTKSAS 409

Query: 895  EAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATA 954
            + K +       ++ +FF  ++  +++GTI NA +V+AD   YG   E CI +A   + A
Sbjct: 410  DNKIVEEEQVDLEMRKFFVNYIKQDSIGTISNAFLVNAD--LYGITSEVCINIARKHSKA 467

Query: 955  VDFPKTGKIVTMPAHL----------------KPKLYPDFMGKEAYQSYKSNKILGRLYR 998
            VDFPKTG     P+ L                + + +PDFM K    SY S++++G+LYR
Sbjct: 468  VDFPKTG---NAPSPLTRQWTQGKNGNILPPERAERWPDFMCKNHEPSYISSRLVGQLYR 524

Query: 999  QSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYK 1058
            + +   D+ +++++ ++   V I  D DLE P    +   A  Q  SY   +  ++E Y 
Sbjct: 525  RIR-LLDDALNLTAAME-GSVTIMLDPDLEYPGWEQYQNVAKIQLDSYHSHIRSIMENYG 582

Query: 1059 VNREEELVTGHIW------------SMPKYNSRKQGELKERLKHSYSALRKEFRQVFEK- 1105
            +  E +L +G I              M  YN+     +++++   + A R  F   F   
Sbjct: 583  IEDEGQLFSGFISVIRNRISDRDTDDMSFYNTNHI--IEKKVSAVFRAYRHRFFDEFGGF 640

Query: 1106 MDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVV---------- 1155
            ++S      +++     ER+      +  HP     SLD++ + SA  ++          
Sbjct: 641  LESTLPDYDDNQSGNAQERR------ICIHP-----SLDMKRKASAYYILCYRNASMDTS 689

Query: 1156 --LLSFAWIANDYLARIKIRCREMANIDTSKPV 1186
              +LSF W+  D L  +K   R    +  +KP+
Sbjct: 690  YRILSFGWLVWDILCHVKQEVR----LGRAKPI 718


>gi|312079416|ref|XP_003142164.1| RNA dependent RNA polymerase [Loa loa]
          Length = 1486

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 242/852 (28%), Positives = 392/852 (46%), Gaps = 159/852 (18%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V +R+++ TP +   LPPEV ++NRV+R + +  +  LR  F D+  Q +     S   A
Sbjct: 432  VLIRKVMATPLRLLLLPPEVMMTNRVIRHFGE--EYALRCVFRDDNGQRLVPKEFSRGRA 489

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE---- 526
               + + +     +T         L  G ++  R + FLA+S+SQ+RD   + +S+    
Sbjct: 490  LQDQSLIIPDLIYRT---------LGTGLHIASRHYQFLAWSNSQMRDGGCYMYSDAVVN 540

Query: 527  ---DGKT--SVLDIKKWMGRFT-DKNIAKCAARMGQCFSSTYATVEVPPTE--------- 571
                G+   +V DI++WMG FT  K++ K  +RMGQCF+    T+ +   +         
Sbjct: 541  DEVHGQMICNVEDIRRWMGDFTASKSVPKMMSRMGQCFTQAQPTIMLEKNDWKVEDDIMG 600

Query: 572  --VDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQ-----------I 618
              V PE  ++    + FSDG+G+I+   A  +A+   LD++P P  YQ           +
Sbjct: 601  GIVHPETGEV----FNFSDGVGRISKKYADRIAE--VLDLHPTPSCYQEDEESAAEIEVV 654

Query: 619  RYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLST 678
            +Y+    V    P       + + + +++ QS H   +ICS           +I +LL  
Sbjct: 655  KYSMPAPVCLSRPL------IMILDQVSEKQSRHLHKKICS-----------RIHSLL-- 695

Query: 679  LNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHL 738
                        +  L+KL+ M+ D + A E L++  +   +   +  S+G     EP  
Sbjct: 696  ------------ELELNKLSAMMFDENDAAEELSSRMSLPIDFHQLH-SSGITFTNEPFF 742

Query: 739  RGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFS 796
            R +L  I    +     K++IF+PA  G  + G +D+ G+L+ GQ FIQ S         
Sbjct: 743  RSLLIAIHRYNIKLHLSKSKIFLPASMGHTMYGVVDDTGLLQHGQVFIQYSPSI------ 796

Query: 797  KHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPH 856
                R+   KK+ +  G V++ KNPC   GD+R+ EAV    L HL D +VFP+ G RPH
Sbjct: 797  ----RYVSGKKI-IYTGPVMVTKNPCHVAGDVRMFEAVYQDALSHLCDVIVFPRYGPRPH 851

Query: 857  TNEASGSDLDGDLYFVTWDENLIPPSKKS---WP---PMEYNAAEAKTLTRPVDQRDIIE 910
             +E +GSDLDGD Y V +D+ L   + +    +P   P EY+         P    D+I+
Sbjct: 852  CDEMAGSDLDGDEYTVIFDKELFFENNEQAMFFPKSIPTEYDT--------PPTTGDMID 903

Query: 911  FFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG-KIVTMPAH 969
            FF K++  +++G + NAH++  D    G   E C  +A   A AVDFPKTG +   +  H
Sbjct: 904  FFLKYLSQDSIGRMSNAHLIMCD--RLGLFHEICDSIARKCAVAVDFPKTGVQAKPLILH 961

Query: 970  LKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLE- 1028
             +    PD+M      SY+S ++LG+LYR+++   D    +S  V       +YD  L  
Sbjct: 962  EQCDSIPDYMQNTIKPSYRSKRLLGQLYRKAQKVED----ISEAVQGAKFADYYDPQLYD 1017

Query: 1029 ---VPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPK---------- 1075
                 E    I  +   +  Y  ++  LL++Y ++ E  +++GH  ++ +          
Sbjct: 1018 ESLFHEQPKLIQRSLRLRNEYYSRIQQLLDEYGISDEASVISGHSLAIKRIVEMEKDDYS 1077

Query: 1076 -YNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEK-------NALFERKAS 1127
             Y+S K  EL  R    ++  R+EF   F++   + + +S D         N     KA 
Sbjct: 1078 FYHSDKIVEL--RYSRIFAYFRREF---FKEFGEESDFVSVDALGKRGMRWNMALITKAK 1132

Query: 1128 AWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKP-- 1185
            AWY VTY   +   S               SF WI  D L  IK   R++A +  S P  
Sbjct: 1133 AWYAVTYASAFRSSS------------EFRSFPWIVWDILLIIK---RQIALMLKSPPPL 1177

Query: 1186 VNYLARYVADRI 1197
            VN L  ++   I
Sbjct: 1178 VNPLVIHLTQAI 1189


>gi|325095101|gb|EGC48411.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
          Length = 1209

 Score =  258 bits (659), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 245/865 (28%), Positives = 366/865 (42%), Gaps = 161/865 (18%)

Query: 217 AILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTP---------SGAIGRC 267
           +I +   ++PR+ Y+T   D+L     DML     W+R                   G C
Sbjct: 205 SITITADTAPRL-YKTDPTDVLAAGLHDMLQIQQKWMRGRPLKTRVGHFGDEHEALAGTC 263

Query: 268 NSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMS---DPFFCIHY 324
             YR  + S     L  V     ER   +  ++R +  R +  ++ P S     F     
Sbjct: 264 FVYRFLLKSS--DDLVVVRDLANER--HIPDIARWVDHRAK--YDAPYSTLMQRFMAFLS 317

Query: 325 EEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG----QSREVNVAALKHIYS-YKWP 379
           +E + + + F +  ++  G I+  + + SF   +R     +  ++ V AL  + S  KWP
Sbjct: 318 QENMPYRVRFQLQKLVWNGDISPAK-AISFASRVRAALVIEDLDIVVRALMRLSSDVKWP 376

Query: 380 VFDA----------CKRLKLVQEWLLKDPELYKGPKQID-DIVEVRRLVITPTKAYCLPP 428
             D            +  K   E   ++ E+ +  + +  + + + R  ITP   Y   P
Sbjct: 377 SPDVEASEVDVPALVEVFKNALESTAREREMTRSNRPMHPNHISIHRAQITPCGTYLDGP 436

Query: 429 EVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVF 488
             E  NRVLR Y    D FLRV F+DE    +  +  +        D+   S        
Sbjct: 437 HAETKNRVLRHYSSHVDHFLRVEFVDETGDPVRYDPRASI------DMIFES-------- 482

Query: 489 KRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVL----DIKKWMGRFTD 544
            R +++L  G  + GRKF FL FS S LR  + WF +   K  +L     I + +GRF  
Sbjct: 483 -RFKTVLKSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNASTIIQNLGRFDH 541

Query: 545 -KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQ 603
            ++ AK  AR+GQ FS T  ++ +    +     D++RNG VFSDG+G            
Sbjct: 542 IQSPAKQVARIGQTFSDTLTSIPISDKYISIG-KDVERNGRVFSDGVG------------ 588

Query: 604 KLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHT----TLEIC- 658
                               KG+++   ++  G  + LR SM KF   ++     +EIC 
Sbjct: 589 -------------------AKGMISL-DSRKKGKSLVLRPSMIKFHLPNSYNAFNIEICG 628

Query: 659 SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN----------QMLVDSDVAF 708
           S  +  P FLN Q+I +L  L V D +F  +Q   +S+L           + L D+++A 
Sbjct: 629 SGLKPLPFFLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATSTAKAARFLEDTNIAK 688

Query: 709 EVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLM 768
            V             I+   G     +  LR ++      +L  L+ +ARI VP    L 
Sbjct: 689 SVGLPWLIN------ILEGFGLRHSNDEFLRRVMELAVLIKLRDLKYRARIRVPNAVTLF 742

Query: 769 GCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDI 828
           G +DE G+L+ G+ F            S  G R        ++   VV+ ++P +HPGD+
Sbjct: 743 GIMDETGILKEGEVFC--------TSLSDKGVREV------LVNPRVVVTRSPAMHPGDV 788

Query: 829 RILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS 885
           +I  AVD P    L  L++C+ F Q G R   +  SG DLDGDLY V +D  L+P  K+ 
Sbjct: 789 QIARAVDVPADSPLRQLHNCIAFSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLLP--KRI 846

Query: 886 WPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCI 945
             P EY   + K L R V + DII+FF   M  + LG I   H   AD    G  D  C+
Sbjct: 847 ARPAEYPRVQEKVLGRAVVREDIIDFFVTFMQQDQLGRIATIHQALADRRPLGTFDPECL 906

Query: 946 LLAELAATAVDFPKTGKIVTMPAHLK-PKLYPDFMG------------------------ 980
           LLAEL +TAVDF KTG  V +    K P   PDF                          
Sbjct: 907 LLAELHSTAVDFSKTGVPVDLARIPKFPSCRPDFQAPSPRIRIAENLSLLEGDMDAVQDG 966

Query: 981 -------KEAYQSYKSNKILGRLYR 998
                  + A + YKS  ILG+LYR
Sbjct: 967 GDEDDDERPAVRFYKSENILGKLYR 991


>gi|299116728|emb|CBN76286.1| RNA-dependent RNA polymerase 2 [Ectocarpus siliculosus]
          Length = 634

 Score =  255 bits (652), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 201/653 (30%), Positives = 296/653 (45%), Gaps = 120/653 (18%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V V R  +TP +  C PPE E+SN V R++ + +DRFLRV F+DE +  +    LS  + 
Sbjct: 45   VMVPRASVTPLRVVCQPPEQEMSNGVTRRFAEHSDRFLRVNFVDENMGRLQ---LSPLLV 101

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE-DGK 529
            P                  R+   +  G  + GRK+ FLA+S SQLR  + +F++E DG 
Sbjct: 102  P------------------RLEGFMKDGLVIAGRKYEFLAYSGSQLRGHACFFYAEGDGA 143

Query: 530  TSVLDIKKWMGRFTDKN-IAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSD 588
             +   I+ WMG  +  + + K AAR+GQ  SST +TVEVPP  +   +PD K   Y F+D
Sbjct: 144  PTADSIRSWMGDMSGIDVVGKHAARLGQSLSSTTSTVEVPPA-LKKLVPDKKAGPYEFTD 202

Query: 589  GIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKF 648
            G G ++  LA         DV P P A                                 
Sbjct: 203  GCGMMSEGLAR------GGDVIPFPHA--------------------------------- 223

Query: 649  QSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML------- 701
               HT +++  + R  P +LNRQ ITLL TL VPD++      +M+S L+++L       
Sbjct: 224  ---HTPMQVIQYARQLPCYLNRQFITLLGTLGVPDKVIEERYSAMVSTLDKVLRTMLSDP 280

Query: 702  VDSDVAFEVLTAACAEQGNT----------AAIMLSAGFNPQTEPHLRGMLTCIRAAQLW 751
             ++++A  V        G T          A  M+ AG N +TEP L+ +L   R   + 
Sbjct: 281  AEAEMAL-VRYYNITSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMI 339

Query: 752  GLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKL--- 808
             LR + RIFVP    L+G +DE G+L+ GQ    +    + +  +   S      +    
Sbjct: 340  DLRHRTRIFVPDASCLLGIVDETGLLQPGQASDSLGCRSVNHYTANRASIMTNADRFGQC 399

Query: 809  -QVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDG 867
             Q + G            GD+      D      ++D  + P     P     +G  + G
Sbjct: 400  TQEMSG------------GDL------DGDLYSVVWDQDLLP-----PEREGVAG--VQG 434

Query: 868  DLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNA 927
            D       EN        + P E     A +  + VD ++I +FF K++ N+NLG I NA
Sbjct: 435  D------SENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGKIANA 488

Query: 928  HVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSY 987
            H+V AD S +GA  + C+ LA L + AVDFPK+G     P  LK   YPDFM KE   +Y
Sbjct: 489  HLVRADLSPFGARCDECLQLAALHSKAVDFPKSGVPAVFPDELKVDSYPDFMCKEDNMTY 548

Query: 988  KSNKILGRLYRQSKDAYDEDISVSSEVDINPV-DIHYDTDLEVPESVDFIADA 1039
             S K++GRL+R +  A   +     + D   +     D  L  P   DF+ +A
Sbjct: 549  LSKKLIGRLFRDTPPAGAANPQRRQQQDERFLGGFELDQSLLAPGYEDFLEEA 601


>gi|403177737|ref|XP_003336185.2| hypothetical protein PGTG_17766 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|375173183|gb|EFP91766.2| hypothetical protein PGTG_17766 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1297

 Score =  255 bits (651), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 201/646 (31%), Positives = 301/646 (46%), Gaps = 98/646 (15%)

Query: 406  QIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVL 465
            Q + I + R + ITPT      P  E  N +LR Y D    F+RV   +E       +  
Sbjct: 476  QREGIFKCRTVTITPTSLVLDGPCAEQGNSILRFY-DFNSAFIRVALREEDGAPHRWD-- 532

Query: 466  SYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF-- 523
                    R++ L  F      F      L+    L GR+F FL +S+S LR   AWF  
Sbjct: 533  --------RNVDLPEF------FSHRYRPLANCLLLAGRQFEFLCYSASALRSHQAWFVC 578

Query: 524  -FSEDGK-TSVLDIKKWMGRFTDK-NI-AKCAARMGQCFSSTYATVEVPPTEVDPELPDI 579
             F   G+  +   I+  +G F    NI A+  AR+GQ F++T   V + P+++   + D+
Sbjct: 579  PFIHRGELITATKIRNRIGSFPKVINIPARYMARVGQAFTTTRKAVTLQPSQIK-LIEDV 637

Query: 580  KRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPP------CAYQIRYAGCKGVVAC-WPA 632
            +RNG VF+DG+G I+  LA +V   L       P        YQIR  G KG+++     
Sbjct: 638  ERNGSVFTDGVGTISLSLAKKVEHALAGPTGSKPPTELQASCYQIRLGGYKGMLSLDTTL 697

Query: 633  KGDGIRMSLRESMNKFQSHHTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQD 691
            +GD +R  LR SM KF+    TL+I   + R  P FLNRQ+I +L  L +  ++F   Q 
Sbjct: 698  EGDIVR--LRPSMKKFEGESYTLDIAEKFDRPFPAFLNRQLIKILEDLGISGQVFLDAQA 755

Query: 692  SMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQ-- 749
              ++    M+ +S  +    +      G  +A+ L     PQ    L  ++   R  +  
Sbjct: 756  ETVA----MVENSQGSMNQSSLVMERAGLGSAVEL-----PQILKQLGRLMDSDRPEEIR 806

Query: 750  ---------------LWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNC 794
                           L  L+   RI +P    L+G  DE G L   Q F+ +  P     
Sbjct: 807  CSFVQDSLDLLAVHCLRELKYNTRIPLPGSFNLVGVADEDGCLLENQIFVPIQLP----- 861

Query: 795  FSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP-----ELHHLYDCLVFP 849
                       ++   +KG   IA++PCLHPGDI+++ A+  P      L  L +C+VFP
Sbjct: 862  ----------GQRKYCLKGRFAIARSPCLHPGDIQVVYAIGDPPVGSRRLASLVNCVVFP 911

Query: 850  QKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDII 909
              G R   +  +G DLDGDLY +  D  ++P S++ + P  Y + + KT   P    D I
Sbjct: 912  VIGKRSLPSCLAGGDLDGDLYTIITDPQMVPDSRRIYQPGSYESGQMKTTESPCTIHDGI 971

Query: 910  EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKI--VTMP 967
            +FF  ++++  +G I N H + AD ++ G LD  C+ LAEL + AVD+PKTG    VT  
Sbjct: 972  DFFFHYILDNIVGMIANKHTIIADQADEGVLDRKCLDLAELHSQAVDYPKTGMAVPVTKI 1031

Query: 968  AHLKPKLYPDFM---------------GKEAYQSYKSNKILGRLYR 998
                PK  PDFM                ++A ++Y S KILG+L+R
Sbjct: 1032 PRCSPK-RPDFMCPEYMFNDHLSDKEKAQQAERTYPSPKILGQLFR 1076


>gi|295668891|ref|XP_002794994.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
 gi|226285687|gb|EEH41253.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
          Length = 1142

 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 212/690 (30%), Positives = 309/690 (44%), Gaps = 142/690 (20%)

Query: 361 QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQID-DIVEVRRLVIT 419
           Q+ EV+V AL  +++                E ++++  L +  + I  + + + R  +T
Sbjct: 378 QASEVDVVALMKLFANAL-------------EIVVREKALSRSNRPIHPNNILIHRAQVT 424

Query: 420 PTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLN 479
           P   Y   P++E  NRVLR Y+   D FLRV F+DE     + + + Y           +
Sbjct: 425 PCGIYLYGPQLETKNRVLRIYEANVDHFLRVEFVDE-----SGDPVRY-----------D 468

Query: 480 SFSQKTRVFK-RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE--DGKT--SVLD 534
           S +    +F+ R + +L  G  + GRKF FL FS S LR  + WF +    G T  +   
Sbjct: 469 SRASVDAIFQSRFKGVLKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGGTLYNATV 528

Query: 535 IKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKI 593
           I + +GRF    + AK AAR+GQ FS T  ++ +   ++     D++RNG +FSDG+G I
Sbjct: 529 IIQNLGRFDHIHSPAKQAARIGQTFSDTLTSIPIS-FDMLSVGEDVERNGRIFSDGVGTI 587

Query: 594 TPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHT 653
           +P L                                             +SM KF    T
Sbjct: 588 SPFLI--------------------------------------------KSMVKFPVPET 603

Query: 654 T----LEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAF 708
                +E+C S  +  P FLN Q+I +L  L V    F  +Q   + +L      +  A 
Sbjct: 604 VGGLNIELCGSGLKALPFFLNAQLIKILEDLGVEQSAFLKLQADEIERLRATAPSTAQAA 663

Query: 709 EVL--TAACAEQGNTAAIMLSAGF--NPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAG 764
             L  T      G    I +  GF  +   +  LR ++      +L  L+ +ARI VP  
Sbjct: 664 RFLEDTHIAKSIGLPWLISILEGFRLSHTDDEFLRRVMELAVLIKLRDLKYRARIRVPNA 723

Query: 765 RWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLH 824
             L G +DE G+L+ G+ F            S+ G R        +++  VV+ ++P +H
Sbjct: 724 VTLFGIMDETGILKEGEIFCV--------TLSEDGHREV------LVRPRVVVTRSPAMH 769

Query: 825 PGDIRILEAVDHPE---LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
           PGD+++ +AVD P    L  L++C+ F Q GDR   +  SG DLDGDLY V +DE LIP 
Sbjct: 770 PGDVQVAKAVDVPADSPLRQLHNCIAFSQYGDRDLPSMLSGGDLDGDLYNVIYDETLIP- 828

Query: 882 SKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALD 941
            K + PP EY   E K L RPV   DII+FF   M  + LG I   H   AD  + G  D
Sbjct: 829 -KITVPPAEYPRVEEKVLNRPVVTDDIIDFFVTFMQQDQLGRIATIHQAIADQRDRGTFD 887

Query: 942 ENCILLAELAATAVDFPKTGKIVTMPAHLK-PKLYPDFMG-------------------- 980
           E C+LLAEL +TAVDF K+G  V +    K P+  PDF                      
Sbjct: 888 EQCLLLAELHSTAVDFSKSGVPVDLARIPKFPRYRPDFQAHGPRVRIAESLSLFEEDEET 947

Query: 981 ------------KEAYQSYKSNKILGRLYR 998
                       +   + YKS KILG+LYR
Sbjct: 948 TAQDLHDDEDDERPPTRFYKSYKILGKLYR 977


>gi|413954937|gb|AFW87586.1| hypothetical protein ZEAMMB73_608283 [Zea mays]
          Length = 577

 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 164/430 (38%), Positives = 227/430 (52%), Gaps = 36/430 (8%)

Query: 19  GFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV---TNTAEVRKTDDYE-- 73
           GFD  + A  L   LE   G VWRCR+KTS TP ESYPDF +   T  A V   D  E  
Sbjct: 130 GFDAGLSARGLADELERVAGTVWRCRIKTSVTPPESYPDFQLSVHTAAAAVFHQDQDEPP 189

Query: 74  ---KVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVS---LGPENPFRLNQRGRTS 127
              +V PHAFVHF       RA D       F   R L  S   L      R +     +
Sbjct: 190 RDGRVAPHAFVHFEHRNAADRAGD-------FFTTRILAQSRHMLHGHAARRRDGVTDAA 242

Query: 128 TPFKLPDVCVEIGTLVSRDEFFVAWRG---PASGTDFLVDPFDGTCKFCFTRDIAFALKS 184
            P   P+ C+EIG +V+ D F VAWRG    AS  DF+VDP  G+C+  F R  AF    
Sbjct: 243 KPMLFPNSCIEIGDVVAPDTFLVAWRGTDDSASALDFVVDPSGGSCRLLFARYTAFTCPD 302

Query: 185 STE-HAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPF 243
                A++ C+ K+EF +  +     +      +++L+L+++P V+YRT+ DD+   VPF
Sbjct: 303 RRRPAALLCCDVKLEFALAHVAEALAFQADD--SLVLRLSAAPLVYYRTSGDDVHGRVPF 360

Query: 244 DMLD-DDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQV---DSL 299
            ++D DDDPWIRTTD T SGAIGRC +YR+S + +    +   +  +  + V V   D  
Sbjct: 361 QLVDADDDPWIRTTDVTRSGAIGRCLAYRVSFAVQFWPTMRVALECMQRQGVPVHVRDRR 420

Query: 300 SRPITIREEPDFEVPMSDPFFCIHYEE----GISFEIMFLVNAVMHKGIINQHQLSDSFF 355
            R  T+ EE     PM D FF   +++    G+ F +++LVN +MH G++N HQ++  FF
Sbjct: 421 CRGFTVLEEAGLVQPMRDAFFSPRHDDDAGAGLRFPVLYLVNVLMHNGVVNPHQMTPEFF 480

Query: 356 DLLRGQSREVNVAALKHIYSYKWPVFD-ACKRLKLVQEWLLKDPELY---KGPKQIDDIV 411
            LL     +VNVAAL  ++  K  V D  C RLK  Q+   K+ +L    +  K  D   
Sbjct: 481 GLLMRTREDVNVAALTELFGAKLGVCDNPCWRLKNAQDRAAKNLDLVCRSRRRKASDCDA 540

Query: 412 EVRRLVITPT 421
           EVRRL++TP+
Sbjct: 541 EVRRLIVTPS 550


>gi|238508311|ref|XP_002385352.1| RNA-dependent RNA polymerase, putative [Aspergillus flavus NRRL3357]
 gi|220688871|gb|EED45223.1| RNA-dependent RNA polymerase, putative [Aspergillus flavus NRRL3357]
          Length = 1107

 Score =  253 bits (647), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 197/626 (31%), Positives = 298/626 (47%), Gaps = 73/626 (11%)

Query: 409  DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTM--NANVLS 466
            ++ +V R+ +TPT+     PE+E  NR+LRK+ +  + F+RV F DE  + +  NANV  
Sbjct: 393  NMTKVHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEGLLFNANV-- 450

Query: 467  YFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF--- 523
                                +F R   I++ G  + GR ++FL FS S LR  + WF   
Sbjct: 451  ----------------DYKDIFGRFIDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWFSSP 494

Query: 524  FSEDGK--TSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEV------DP 574
            F +D     +   I   +G+F+   + A+CAAR+GQ F+ T   V +    V      D 
Sbjct: 495  FVDDNGHMQTYFSIVSAIGKFSHITSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDL 554

Query: 575  ELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKG 634
              PD  R   VFSDG+G I+ ++   +   + L    P C +QIR    KG++A      
Sbjct: 555  TSPDGSR---VFSDGVGAISREVVASIWADIPLKRGNPTC-FQIRLGRAKGMLAADSRLR 610

Query: 635  DGIRMSLRESMNKFQSHHT-TLEICSW-TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDS 692
              + + +R SM KF S     LEIC+  +R  P  LNRQ+I +L  +    + F+ MQ+ 
Sbjct: 611  TAV-IQIRPSMIKFDSEDMKNLEICNMASRPYPMVLNRQVIKILEDMGASKDWFFQMQNE 669

Query: 693  MLSKLNQMLVDSDVAFEVL----TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAA 748
             L++L  + V +D     L     A C               N + +  LR ++  +   
Sbjct: 670  ELTRLQSITVSTDKTARFLKDKSVAECIGLYRLYRQCYWTRLNYKKDGFLRAIVEAVVLR 729

Query: 749  QLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKL 808
            +L  L+ KARI V  G  L G +DE G L+ G+ ++          F +   R+A     
Sbjct: 730  ELRLLKHKARIPVKKGMTLYGVIDETGFLQEGEVYV---------TFDRMEGRYAAPPG- 779

Query: 809  QVIKGFVVIAKNPCLHPGDIRILEAV----DHPELHHLYDCLVFPQKGDRPHTNEASGSD 864
                G +++ ++P LH GDI+  + V    DHP  +H  +C+VF QKG R   ++ SG D
Sbjct: 780  ---PGHILVTRSPALHCGDIQRAQNVIPPEDHPLRYH-RNCIVFSQKGSRDLPSKLSGGD 835

Query: 865  LDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTI 924
            LDGDLY V WD  L   S +++ P +Y    +  + R V   D+  FF + M ++ LG I
Sbjct: 836  LDGDLYHVIWDPEL--ESVETFAPADYPRPTSIDIGRDVRVDDMAAFFVEFMRSDILGMI 893

Query: 925  CNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY-PDFMGKEA 983
               H+V AD +  G  D +C LLA L + AVDF KTG  V M    +   Y PDF+    
Sbjct: 894  AIRHMVMADQAASGTRDTSCRLLAGLHSKAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGP 953

Query: 984  YQSYKSNKILGRLYRQSKDAYDEDIS 1009
                       RLY +SK   ++ +S
Sbjct: 954  QT---------RLYNKSKIGLEQHVS 970


>gi|105990552|gb|ABF81698.1| RNA-dependent RNA polymerase [Zea mays]
          Length = 459

 Score =  252 bits (643), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 158/478 (33%), Positives = 254/478 (53%), Gaps = 53/478 (11%)

Query: 252 WIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITY------LGERRVQ----VDSLSR 301
           W+R  DFTP+ + G C++  + +S      +S ++        LGE  +       S S 
Sbjct: 13  WVRALDFTPNSSFGECSTLVLKLSK--GASVSYILESLPFSGELGELAIASMDVFGSSSN 70

Query: 302 PITIREEPD-FEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG 360
            + + + P+ F VP               +E++F +N+++H G +    ++   F +L  
Sbjct: 71  VVPLVDCPNGFSVP---------------YEVLFRLNSLVHMGKLVARHVNADLFKVLED 115

Query: 361 QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP 420
            S +      + +   K   ++  + ++     +    +     ++   ++   R+ ITP
Sbjct: 116 LSIDTLRRIFEKMSKLKSTCYEPLQFIRHEAHSMNMRKKALSNKRESGKLMRCYRIHITP 175

Query: 421 TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLS------YFIAPIVR 474
           +K YCL PE E+SN V++ + + A  F RVTF+DE    ++ N LS      +F  P+  
Sbjct: 176 SKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSARTEQGFFSKPL-- 233

Query: 475 DITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLD 534
                    KT ++ R+ SIL  GF +  +K+ FLAFS+SQLR  S W F+ +   +  +
Sbjct: 234 ---------KTGLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTAEN 284

Query: 535 IKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK----RNGYVFSDG 589
           I++WMG F D ++++KCAARMGQ FSS+  T EV   +V+  +PDI+       Y+FSDG
Sbjct: 285 IRRWMGHFEDIRSVSKCAARMGQLFSSSRQTFEVSSYDVEV-IPDIEVTTDGTKYIFSDG 343

Query: 590 IGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQ 649
           IGKI+   A +VA+ + LD   PP A+QIRY G KGV+   P       +SLR SM KF+
Sbjct: 344 IGKISTRFARQVAKLIGLDPAHPPSAFQIRYGGYKGVITIDPT--SFFNLSLRPSMKKFE 401

Query: 650 SHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA 707
           S  T L I +W++ QP ++NR+II+LLSTL + DE F SMQ   + + + ML + + A
Sbjct: 402 SKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEAFESMQQDDMHESDGMLTNKEAA 459


>gi|145547505|ref|XP_001459434.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830373|emb|CAI39057.1| RNA-dependent RNA polymerase [Paramecium tetraurelia]
 gi|124427259|emb|CAK92037.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1331

 Score =  251 bits (640), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 190/636 (29%), Positives = 318/636 (50%), Gaps = 92/636 (14%)

Query: 410  IVEVRRLVITPTKAYCLPPEV-ELSNRVLRKYKDLADRFLRVTFMDEGLQTMNAN--VLS 466
            +  ++R+ +TP+  Y    ++ E ++ ++R+Y +  D F+R+ F DE L+T++ +  +  
Sbjct: 510  VAMIKRVSLTPS-GYIFNLKLPEETSEIIRQYYNQLDNFIRLHFEDENLETIHGHHYITE 568

Query: 467  YFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE 526
            Y+                       +S LS G +L G +F  L +S+SQLR  S W F+ 
Sbjct: 569  YYF----------------------KSKLSNGLHLLGEQFRLLTWSASQLRGGSCWIFNY 606

Query: 527  D-GKTSVLDIKKWMGRFTDKN---IAKCAARMGQCFSSTYATVEVPPTEVDPELPD-IKR 581
            +  + S  +    +G F   N   +AK AAR+GQ FSS+  ++++    V  ++PD +  
Sbjct: 607  NRAQISRQNFIDSIGNFNTLNMDQVAKNAARLGQNFSSS-KSIDLRQIIVKTQVPDKVGD 665

Query: 582  NGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSL 641
            NG +++DGIGKI+ +L   +  ++    N    A Q+RY G KGV+       D   + L
Sbjct: 666  NGKLYTDGIGKISRNLIEMIRVEMN---NHTISAIQVRYHGAKGVLLLNDDLPDNT-IEL 721

Query: 642  RESMNKFQ-------SHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSML 694
            R+SM KF        ++ T + +  + +F+ G+LNRQII LL TL + +E+F  +Q   L
Sbjct: 722  RKSMIKFNPTLMNDGNYKTMISLLDYNKFRGGYLNRQIIILLVTLGIQEEVFMQLQREYL 781

Query: 695  SKL-NQMLVDSDVAFEVLTAACAE-QG-----NTAAIMLSAGFNPQTEPHLRGMLTCIRA 747
             K+ N   VDS +    L     E QG     +   +M++A  N     +++ +L  ++ 
Sbjct: 782  HKIANLSAVDSSIYNHFLVDYNGELQGLPSIIDNIRMMINANLNENNNHYIKRVLDRLKR 841

Query: 748  AQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKK 807
              L  LR K+ I +     ++G +D+  +L+ G+    V +    N              
Sbjct: 842  RGLMQLRTKSNILMDQAARVLGVVDDYDILDQGEVVCIVKQSLDVNH------------- 888

Query: 808  LQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL----------HHLYDCLVFPQKGDRPHT 857
             + I G +++ +NPCLHPGDIR + A+   E+             Y+C+VFP KG+    
Sbjct: 889  -KYITGEIIVVRNPCLHPGDIRKVRALSENEILSRYNMKNPFAEYYNCIVFPCKGNSIPA 947

Query: 858  NEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAE--AKTLTRPVD----------- 904
            +   G      +YFV+WD  +IP  K +  PM Y+  +  A  +++ +            
Sbjct: 948  DCGGGDLDGD-IYFVSWDPKVIP--KTTEYPMNYDEEKKPAVVVSKQIQAQGYISAEDFF 1004

Query: 905  -QRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKI 963
             +  +IEF  +++  + LG I N+H+  AD S   A D  CI LAEL + AVD+ K G  
Sbjct: 1005 QENKMIEFLLEYLNFDVLGKIDNSHLAIADGSPDYAKDPKCIRLAELHSAAVDYVKHGNK 1064

Query: 964  VTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQ 999
            V +P +L  K +PDFM K++   Y+S  ILG+LYR+
Sbjct: 1065 VEIPNNLVTKRWPDFMEKDS-MVYESTSILGKLYRE 1099


>gi|224148789|ref|XP_002336714.1| hypothetical protein POPTRDRAFT_593566 [Populus trichocarpa]
 gi|222836572|gb|EEE74979.1| hypothetical protein POPTRDRAFT_593566 [Populus trichocarpa]
          Length = 196

 Score =  249 bits (635), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 125/170 (73%), Positives = 143/170 (84%), Gaps = 1/170 (0%)

Query: 924  ICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEA 983
            I  +HVVHAD SEYGALDE C+ LAELAAT+VDFPKTGKIV+MP+ LKPK+YPDFMGKE 
Sbjct: 25   IPKSHVVHADLSEYGALDEKCLTLAELAATSVDFPKTGKIVSMPSDLKPKIYPDFMGKEE 84

Query: 984  YQSYKSNKILGRLYRQSK-DAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQ 1042
            +QSYKS KILGRLYRQ K    D+D++ SSE++    DI YD DLEVP   DFI+DAW+Q
Sbjct: 85   HQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDIPYDLDLEVPGVTDFISDAWDQ 144

Query: 1043 KCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSY 1092
            KCSYDGQLNGLL QYKV REEE+VT H+WSMPK +SRKQG+LKERLKHSY
Sbjct: 145  KCSYDGQLNGLLAQYKVKREEEVVTWHVWSMPKGSSRKQGDLKERLKHSY 194


>gi|403358446|gb|EJY78873.1| RNA-directed RNA polymerase [Oxytricha trifallax]
          Length = 1379

 Score =  249 bits (635), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 212/698 (30%), Positives = 321/698 (45%), Gaps = 134/698 (19%)

Query: 408  DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSY 467
            D+ +  RR+  TPT       + E +NRV+R++K   D F R+  +++ LQ  +      
Sbjct: 446  DNDLRQRRIYQTPTLTLFFANQREQTNRVIRQFKKYKDNFFRLVLVNDQLQKFH------ 499

Query: 468  FIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSED 527
                        S  QK  + + ++ ++    Y+       L +S+SQL++ S W     
Sbjct: 500  ----------FGSMKQK-EMLQHMKDLMKQELYIGDSLAQVLNYSNSQLKNHSVWMVCS- 547

Query: 528  GKTSVLDIK-----KWMGRFTDKN-IAKCAARMGQCFSST-YAT-------VEV-----P 568
              TS+ +I+       +G FT++    K  AR GQCFS+T Y T       VEV      
Sbjct: 548  --TSIPEIQPNAIISRLGTFTNEGGNLKMFARRGQCFSTTKYVTKLDPDSNVEVIEDIER 605

Query: 569  PTEVDPEL----PDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCK 624
            P + DP+L    PD +   YVF+DG G I+  LA E+AQ  +L       A+Q+R  G K
Sbjct: 606  PKKNDPDLAQAEPDQREGNYVFTDGCGNISELLASEIAQSHQL---MKCSAFQVRIGGVK 662

Query: 625  GVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDE 684
            GV+   P   DG ++ LR+S  KF   +  LE+   + F  G+LNRQ+I LLS L V D 
Sbjct: 663  GVLMLKPDL-DGRKVQLRKSQIKFACENWGLEVIRCSTFSQGYLNRQVILLLSCLGVDDN 721

Query: 685  MFWSMQDSML----------------------------------SKLNQMLVDSDVAF-- 708
            +F S   + L                                  SK N+M  + DV F  
Sbjct: 722  VFLSHLHTALENLNVEKVIKNLYSRSTVFMTSKSKNRKDENENKSKANEMKNELDVFFGP 781

Query: 709  -------------------EVLTAACAEQGNTAAIMLSAG--FNPQTEPHLRGMLTCIRA 747
                               E +     E+  T  + LS    F  + EP    +L+ +  
Sbjct: 782  SKIFSPIFKHCLAQTLKQIEQVKKGLPEEMRTKDLHLSPKQVFFLENEPIFDSILSNMVL 841

Query: 748  AQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI----------QVSEPF------L 791
                 L++KARI +     L+G +DE G L+ G+ ++          Q+ E        +
Sbjct: 842  GLAVNLKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGSYDYDQIQEKLVDEYDEI 901

Query: 792  GNCFSKHGSRFAETKKL--QVIKGFVVIAKNPCLHPGDIRILEAV-DHPELHHLYDCLVF 848
             N   K  SR AE      Q+I+G V++ KNPC HPGDIR L AV +H    HL + +VF
Sbjct: 902  ENADGKK-SRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRAVGEHSTFEHLTNVIVF 960

Query: 849  PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRD- 907
              KG RP  ++ SG DLDGD+Y   WDE+L+   +K   P  Y   E    T    Q+D 
Sbjct: 961  SSKGCRPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEKPAVYKKFEESIKTDS--QKDT 1018

Query: 908  IIEFFAKHMVNENLGTICNAHVVHADH-SEYGALDENCILLAELAATAVDFPKTGKIVTM 966
            I+++ A++   +NLG + + H+  +D     G  ++ C+ L+   + AVDF K GK V  
Sbjct: 1019 IVDYMAEYFEKDNLGHLAHLHLGLSDQLGVEGPYNKECVELSWYISIAVDFAKHGKHVDK 1078

Query: 967  PAH--LKPKL--YPDFMGKE--AYQSYKSNKILGRLYR 998
              +  ++ KL  +PD+M K     ++ +S  ILG+LYR
Sbjct: 1079 DKYEMIEKKLDRWPDYMEKNDIGRKTVESPLILGQLYR 1116


>gi|403414238|emb|CCM00938.1| predicted protein [Fibroporia radiculosa]
          Length = 1215

 Score =  248 bits (632), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 213/746 (28%), Positives = 348/746 (46%), Gaps = 87/746 (11%)

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475
            +V+TPT  Y   P  E SNR++R Y    D FLRV+F++E       N L Y      R+
Sbjct: 420  VVVTPTTMYLEGPFPERSNRIMRMYMANQDSFLRVSFVEE-------NRLMYRFD---RE 469

Query: 476  ITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF-----SEDGKT 530
            +    F     V +RV+ +L  G  + GR F FLA+S S L++ + WF      ++  + 
Sbjct: 470  LDARDF-----VNRRVKHLLLNGLTIAGRHFDFLAYSQSALKEHAVWFVKPFNHTDRRQI 524

Query: 531  SVLDIKKWMGRFTDKNI--------AKCAARMGQCFSSTYATVEVPPTEVDPELPDI--K 580
                I   +G F D           A+ AAR+ Q F++T ++V V   EV P +PDI   
Sbjct: 525  DAATIISGLGSFHDLAFDERLIYCPARYAARISQAFTATDSSVSVEAEEVVP-IPDIWDA 583

Query: 581  RNGYVFSDGIGKITPDLAMEVAQKLKLDVN-----PPPCAYQIRYAGCKGVVACWPAKGD 635
             + Y F+DG+G I+PDLA  +  +L+           P AYQ+R+ G KG+++    + +
Sbjct: 584  THTYSFTDGVGTISPDLAQAIWDELRAKQKRSRHRTKPRAYQVRFMGSKGMLSV-DYRLE 642

Query: 636  GIRMSLRESMNKFQSHHTTLEICSWTRFQPG--FLNRQIITLLSTLNVPDEMFWSMQDSM 693
               + LRESM KF + ++     +    +PG  +LNR +I LL  L VP   F ++QD+ 
Sbjct: 643  NRLVCLRESMIKFDAPNSLFIEIARAFDKPGRYYLNRPLIMLLEGLGVPYSTFQALQDAA 702

Query: 694  LSKLNQMLVDSDVAFEVLTA-ACAEQGNTAAIMLSA---GFNPQTEPHL-RGMLTCIRAA 748
            +      +     +  +L A          + MLS    G  P  E    + M+      
Sbjct: 703  VQNAQDSVESLSSSARLLEAHGLGTSFRLTSTMLSLHRLGLGPLHEDIFWQQMMDFAVNH 762

Query: 749  QLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKL 808
             L  L+  ARI VP G  L+G  D  G L  G+ F          C     S        
Sbjct: 763  VLRELKHHARIPVPDGWTLVGVADVHGFLNEGEIFA---------CVHPQDSSVP----- 808

Query: 809  QVIKGFVVIAKNPCLHPGDIRILEAVDHP------ELHHLYDCLVFPQKGDRPHTNEASG 862
              ++G  +I+++P +HPGD++++ A+  P      E   L + +VF  KG RP  +   G
Sbjct: 809  IYLEGPTLISRSPTIHPGDVQVVHAIGPPPPGSPFEKEPLPNTVVFSIKGGRPLPSYLGG 868

Query: 863  SDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLG 922
             DLDGD+Y +T   ++ P  ++++PP  Y+ A  K +  P    D+ EF A++++++ LG
Sbjct: 869  GDLDGDVYNLTTMPSMRP--RRTYPPARYDPAPKKFVDHPSTMADVAEFVAEYIISDTLG 926

Query: 923  TICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPA--HLKPKLYPDF-- 978
             I    ++ AD S  G  D +C+ LA+L + AVD+PK+G  V +     LK K  PD+  
Sbjct: 927  IIAINWLITADQSGLGIFDPDCLKLAQLHSDAVDYPKSGIPVALDQIPRLKRKSKPDWNA 986

Query: 979  ---MGKEAYQSYKSNKILGRLYRQ---------SKDAYDEDISVSSEVDINPVDIHYDTD 1026
               + KE+   Y+S + +G L+R           + +  +   +S+  ++N  DI  +  
Sbjct: 987  PETITKESTNWYESTRAIGHLFRAIELPALQTVKRASRYQRRHLSNGDELNLDDILAEFR 1046

Query: 1027 LEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPK-YNSRKQGELK 1085
               P   D+       + S   +   L E+  V+  +E      W + + Y +R +    
Sbjct: 1047 SVEPHRADYFQLTIEHRIS---EFIPLPEEGDVDEVDEAAITRTWELLRAYGTRLRAICA 1103

Query: 1086 ER-LKHSYSALRKEFRQVFEKMDSDC 1110
            +  L H+ SA+  E   V   + ++C
Sbjct: 1104 DHTLSHTRSAMLTEEEVVVGTIVANC 1129


>gi|449550827|gb|EMD41791.1| hypothetical protein CERSUDRAFT_147107 [Ceriporiopsis subvermispora
            B]
          Length = 1211

 Score =  247 bits (630), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 196/631 (31%), Positives = 312/631 (49%), Gaps = 76/631 (12%)

Query: 409  DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYF 468
            D  +  RL++TPT      P  E  NRV+R ++D  D FLRV F+DE       N L Y 
Sbjct: 418  DTFDCLRLIVTPTTWSLEGPFPERFNRVIRTHRDNCDSFLRVAFVDE-------NRLQYR 470

Query: 469  IAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE-- 526
                 R++  + F     + +RV+ +L  G  + GR F FLA+S S LR+ + WF     
Sbjct: 471  FD---REVDGSEF-----IRRRVKGLLINGITIAGRHFEFLAYSQSALREHAVWFVKSFT 522

Query: 527  DGKTSVLD---IKKWMGRFT---DKNIAKC----AARMGQCFSSTYATVEVPPTEVDPEL 576
            D   + +D   I + +G F    D  +  C    AAR+ Q F++T A+V V   E+   L
Sbjct: 523  DASGACVDAPGIIRTLGNFHVNYDPQLIYCPARWAARVSQAFTATDASVSVEAEEIII-L 581

Query: 577  PDIK-RNGYVFSDGIGKITPDLAMEVAQKL-----KLDVNPP-PCAYQIRYAGCKGVVAC 629
             DI+  N  +F+DG+G I+ +LA  + ++L     +    P  P A+QIR+ G KG+++ 
Sbjct: 582  DDIEDSNRRLFTDGVGTISAELAKAIWKELCARRHRNRRRPAYPRAFQIRFGGSKGMLSV 641

Query: 630  WPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPG--FLNRQIITLLSTLNVPDEMFW 687
                 +G  + LR SM KF++ H+ +   +    +PG  +LNR +I LL  L VP ++F 
Sbjct: 642  -DYTLEGRIICLRRSMIKFEAPHSMVVEVARAFDRPGKYYLNRPLIMLLEGLGVPYDVFQ 700

Query: 688  SMQDSMLSKLNQMLVDSDVAFEVL-TAACAEQGNTAAIMLSA---GFNP-QTEPHLRGML 742
             +QD  +  + +     + A  +L T          ++ML+    G  P   +   R M+
Sbjct: 701  KLQDDAVQHVEESRGSLETAARLLETHGLGSSFRLTSVMLALHKLGVEPFMQDVFWRQMM 760

Query: 743  TCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRF 802
                   L  L+  ARI VP G  L+G  D  G LE GQ F  +                
Sbjct: 761  DFAVNHVLRELKHHARIPVPDGWTLVGVADVHGFLEEGQIFACIIP-------------- 806

Query: 803  AETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP------ELHHLYDCLVFPQKGDRPH 856
             +      ++G  +I+++P +HPGD++++ A+  P          L + +VF  KG RP 
Sbjct: 807  TDGAAPIYLEGPTLISRSPTIHPGDVQVVHAIGKPPPNSPFAKESLRNTVVFSIKGSRPL 866

Query: 857  TNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHM 916
             +   G DLDGD+Y +T    L P  ++++ P  Y AAE K L RP    D+ +F A+++
Sbjct: 867  PSCLGGGDLDGDVYNLTTMPELRP--RRTYEPASYAAAEKKLLIRPCTMADVADFVAEYI 924

Query: 917  VNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKL-- 974
            +++ LG I    ++ AD S  G  D  C+LLA L + AVD+PK+G+ V  P    P+L  
Sbjct: 925  ISDTLGIIAINWLIIADQSVEGIRDPACLLLAALHSDAVDYPKSGRPV--PVENIPRLKF 982

Query: 975  -------YPDFMGKEAYQSYKSNKILGRLYR 998
                    P+ +  +A + Y+S + +G+L+R
Sbjct: 983  RAKPDWNAPETLKGDAVEFYESQRAIGKLFR 1013


>gi|242221257|ref|XP_002476381.1| predicted protein [Postia placenta Mad-698-R]
 gi|220724386|gb|EED78433.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1141

 Score =  246 bits (629), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 234/817 (28%), Positives = 373/817 (45%), Gaps = 115/817 (14%)

Query: 404  PKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNAN 463
            P   DD  +  R+++TPT  +   P+ E SNRV R+Y      FLRVTF+DE        
Sbjct: 363  PPTTDDNFDCLRVIVTPTCLHLEGPDPERSNRVFRRYPGQEQNFLRVTFVDE-------- 414

Query: 464  VLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF 523
              +  +    R++    F     + +RVR +L  G  + GR F FLA+S S L++ + WF
Sbjct: 415  --TRLMYRFDREVDGRGF-----INRRVRHMLVQGLTIAGRHFEFLAYSQSALKEHAVWF 467

Query: 524  FSE----DGK-----TSVLDIKKWMGRFTDKNI---AKCAARMGQCFSSTYATVEVPPTE 571
             +     DG+     T +  +  +   F  + I   A+ AAR+ Q F++T +++ V   E
Sbjct: 468  VTPFRDPDGREVRASTIIASLGSFRPAFEPQLIYCPARYAARISQAFTATDSSISVELEE 527

Query: 572  VDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCA------YQIRYAGC 623
            V  + PDIK N   Y F+DG+G+I+P LA  ++ +L+        A      +QIR+ G 
Sbjct: 528  VFYD-PDIKDNTGQYCFTDGVGRISPALARAISSELRAKKRRARRARTYTRLFQIRFMGS 586

Query: 624  KGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPG--FLNRQIITLLSTLNV 681
            KG+++      D   + LR SM KF +  +     +    +PG  +LNR +I LL  L V
Sbjct: 587  KGMLSVDYQLSDR-SIFLRPSMIKFDAPDSLNVEIAQAFDKPGKYYLNRPLIMLLEGLGV 645

Query: 682  PDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTA----ACAEQGNTAAIMLSAGFNPQTEPH 737
            P E+F ++QD  +      +   + +  +L A    A     +T   M   G  P +E  
Sbjct: 646  PYEVFEALQDDAVQDAEGAVHSLESSARLLEAYGLGASFRLSSTMVNMHRLGLRPLSEDI 705

Query: 738  L-RGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFS 796
              + M+       L  L+  ARI +P G  L+G  D  G LE G+ F  V  P L     
Sbjct: 706  FWQQMMDFAVNHVLRELKHHARIPLPDGWTLVGVADVHGYLEEGEIFACVDSPDLLEPI- 764

Query: 797  KHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP------ELHHLYDCLVFPQ 850
                          ++G  VI+++P +HPGD++++ A+  P      E   L + +VF  
Sbjct: 765  -------------YLEGPTVISRSPTIHPGDVQLVHAIGRPPPGSPFEHESLRNGVVFSI 811

Query: 851  KGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIE 910
            KG+RP  +   G DLDGD+Y VT   +L P   +++    Y  A  KT+  P    D+ +
Sbjct: 812  KGERPLPSCLGGGDLDGDVYNVTTMPSLRP--ARTYRSGSYKPAVKKTVDHPSTMEDVAD 869

Query: 911  FFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMP--A 968
            F A+++ ++ LG I    ++ AD S  G LD +C+ LA+L + AVD+PK+G  V +    
Sbjct: 870  FVAEYINSDTLGIIAINWLIIADQSSEGILDPHCLRLAQLHSDAVDYPKSGNPVPLERIP 929

Query: 969  HLKPKLYPDFMGKEAYQS-----YKSNKILGRLYRQSKDAYDEDISVSSEVD-INPVDIH 1022
             LK K  PD+   E         Y+S + +GRLYR+ +      ++ +S     N  D H
Sbjct: 930  RLKFKAKPDWNAPETLTRATPDFYESTRAIGRLYRRIELPALRTVTRASRFQRRNLEDGH 989

Query: 1023 YDTDLEVPESV-------DFIADAWNQKCSYDGQLNGLLEQYKVN-------REEELVTG 1068
              T  ++ +         D I+  W     Y  +L  +   + ++        EEE V G
Sbjct: 990  ELTLADILDGFQEDNVDEDVISRLWELFEYYSSRLRTICADHTLSDSRSAMLTEEEAVIG 1049

Query: 1069 HIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASA 1128
             I +      RK+ +L  +L+   + L    R          E+  ED+  +        
Sbjct: 1050 TIVAKCS-QPRKRKDLMSQLREQTATLVASVRD---------EIAGEDDTPS-------- 1091

Query: 1129 WYQVTYHPEWVKKSLDLQEQD--SARSVVLLSFAWIA 1163
              + +    W+  ++ L E D   AR     SFAWIA
Sbjct: 1092 --EKSLERAWIAYNIALMEDDYFGAR-----SFAWIA 1121


>gi|115436872|ref|XP_001217666.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114188481|gb|EAU30181.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 1039

 Score =  246 bits (627), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 200/659 (30%), Positives = 302/659 (45%), Gaps = 90/659 (13%)

Query: 409  DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYF 468
            D V + R+ ++P +     PE E  NRV+RK+      F+RV F DE             
Sbjct: 384  DHVLIHRVSVSPARITFHGPEREPQNRVIRKFPRHHAYFIRVQFCDERGS---------- 433

Query: 469  IAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE-- 526
                  D+  N      ++F+R R++L+ G  + GR ++FL FS S LR  S WF S   
Sbjct: 434  ------DLFFNPKHDYEQIFQRFRTVLTLGIQIAGRTYTFLGFSHSSLRSHSVWFSSPFI 487

Query: 527  DGKTSVL---DIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRN 582
            DG  S+     I K +G F+   + A+CAAR+GQ F+ T  T+ V    V+  + DI  +
Sbjct: 488  DGDGSLQTSSSIIKALGNFSGITSPARCAARIGQAFTETPFTLPVQNVVVE-YIEDITSS 546

Query: 583  --GYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMS 640
                VFSDGIG I+ ++   + + +      P C +Q+R  G KG+++   ++ +G  + 
Sbjct: 547  DESRVFSDGIGTISLEVVERIWKGIPQKKGTPTC-FQVRLGGAKGMLSL-DSRLEGSVIR 604

Query: 641  LRESMNKFQSHHTT-LEICSW-TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN 698
            +R SM KF +     L IC   +   P  LNRQI+ +L  + VPD+ F+ +Q+  L +L 
Sbjct: 605  IRPSMVKFSTDDMRDLGICGMASEPYPLVLNRQIVKILEDIGVPDDWFFGLQNDRLRQLQ 664

Query: 699  QMLVDSDVAFEVLTAACAEQGNTAAIMLS----AGFNPQTEPHLRGMLTCIRAAQLWGLR 754
             +   +D     L  A          +         + + +P LR ++  +   +L  L+
Sbjct: 665  LISSSADKTATFLKDAKIADSIGLYKLFRWCYWMDLDYREDPFLRSIVEAMILRELRLLK 724

Query: 755  EKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGF 814
             K+RI VP G  L G +DE G L+  + FI          F      +A         G 
Sbjct: 725  HKSRIPVPQGMTLYGIIDETGYLKENEVFI---------TFDTISGLYAAPPG----PGP 771

Query: 815  VVIAKNPCLHPGDIRILEAV----DHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
            V++ ++P L+ GDI++   V    DHP   H  +C++F Q+G R   ++ SG DLDGDLY
Sbjct: 772  VLVTRSPALYDGDIQVARNVVPPPDHPLARH-KNCIIFSQQGARDLPSQLSGGDLDGDLY 830

Query: 871  FVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVV 930
             V WD   I     + PP  Y       + R V  +D+  FF + M  + +G I   H++
Sbjct: 831  HVIWDP--IVAKVHTSPPANYARVVPHDIGRVVTTKDMAYFFVEFMKTDCVGIIATRHMI 888

Query: 931  HADHSEYGALDENCILLAELAATAVDFPKTGKIVTM---PAHLKPKLYPDFM-------- 979
             AD    G     C LLAEL +TAVD+ K+G  V M   P+    +  PDFM        
Sbjct: 889  LADQEPEGTHASGCKLLAELHSTAVDYSKSGVPVDMAKIPS--TGRFRPDFMAPGPLAQV 946

Query: 980  --------------------GKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP 1018
                                G      YKS++ILG+LYR    A DE       +D  P
Sbjct: 947  YSKSKITLTELSSHAAYDEDGPSHILYYKSDRILGKLYR----AIDEKRIWHERIDTGP 1001


>gi|328874858|gb|EGG23223.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
          Length = 2645

 Score =  244 bits (624), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 214/786 (27%), Positives = 361/786 (45%), Gaps = 112/786 (14%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            ++ + ITPT+     P +   NR LR+Y   AD FL V F++E L               
Sbjct: 1092 IKNVYITPTRTLFQKPSMYQLNRALRRYG--ADNFLLVHFVEENLD-------------- 1135

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCG-RKFSFLAFSSSQLRDCSAWFFSEDGKTS 531
               +  + F  K+     + +IL  G  + G  +F ++  S+SQ R  S WF +      
Sbjct: 1136 -EKVEYSKFQTKS-----IENILLEGIMIEGIGRFHYIGNSASQARSSSCWFTNNRN--- 1186

Query: 532  VLDIKKWMGRFTDKNIAKCAAR-------MGQCFSSTYATVEVPPTEVDPELPDIKRNGY 584
              DI     +  D +I    A        +G  FS T  ++ +P  + +  L D++ +  
Sbjct: 1187 --DIDTIRNQLVDLSINTGIANPRKYLRSLGLVFSGTTPSIIIPNNQYNENLDDVRNDEA 1244

Query: 585  VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
            +F++GIG I  +LA ++  +    +     +YQIR  G KGVV+   +  +GI   LR S
Sbjct: 1245 IFTEGIGFIGKNLANKINAENSFPLGT--SSYQIRIGGNKGVVSVHHSIENGIY--LRNS 1300

Query: 645  MNKFQSHHT----TLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQM 700
            M KF ++++    TLEI S    +   LNRQII L   L VPD +F  +    L KL  +
Sbjct: 1301 MKKFNTNNSEMNRTLEIISIASKKNCTLNRQIINLFGGLGVPDRLFLMLVMECLEKLALI 1360

Query: 701  LVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQT--EPHLRGMLTCIRAAQLWGLREKAR 758
            L DS       + A +E  N      S     +   +P +R +L  +   QL    +   
Sbjct: 1361 LQDS-------SMARSELKNIDFFNQSEPTEKELLYDPLIRRILHTLYKKQLTKYLDFCF 1413

Query: 759  IFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIA 818
            I +   R L+G +DE G LE  Q F++++               A+  ++ VI+  V + 
Sbjct: 1414 IPIKNARTLLGVIDETGTLEENQVFVRIT---------------ADNNEIIVIQSNVAVV 1458

Query: 819  KNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENL 878
            KNPCLHPGD+++   VD+  LHH+ D +VF QKG  P  ++ SGSDLDGD YFV +D ++
Sbjct: 1459 KNPCLHPGDVQLAMGVDNQLLHHMLDVVVFSQKGTIPLFSKCSGSDLDGDRYFVCFDTDM 1518

Query: 879  IPP--SKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSE 936
            +      K +  +    +++ +  + +++  +I+ F ++     LG I  +H+  +D+  
Sbjct: 1519 VNTIVQHKDFCNL---PSKSDSTVKEINKDTVIQQFIENTQKGRLGQIALSHLAISDYK- 1574

Query: 937  YGALDENCILLAELAATAVDFPKTGKIVTMPAHL-----KPKLYPDFMGKEA---YQSYK 988
                D+  I LA      VDF KT    T+P          + YP FM        +  +
Sbjct: 1575 -SPTDDLAIELAIEHFKEVDFVKTNIHGTVPEQALELTNYGRRYPMFMKASVGANKEFSE 1633

Query: 989  SNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDG 1048
            S K+LG++Y Q        +SV+  +     D   D  + V    D++ DA +Q  +Y  
Sbjct: 1634 STKVLGKIYNQCSSL----VSVAQYLP----DSRVDESILVSGYEDYVEDARHQFKNYKK 1685

Query: 1049 QLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQV----FE 1104
            ++  L  +Y + +EE++++ ++ +    +S  +  + E   + +S L   +R +    F+
Sbjct: 1686 EIRYLRSKYNIEKEEDIISSYMDNSMSGSSYSKN-IVEDAYNQFSVLAVHYRDLFLLPFK 1744

Query: 1105 KMDSDCELLSED---EKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAW 1161
              +S   +  ED   +     ++K SAWY V+Y  + ++K              +LSF W
Sbjct: 1745 SKESGGGVSDEDIVIKYRQEIDKKVSAWYFVSYGDDKLEK--------------VLSFYW 1790

Query: 1162 IANDYL 1167
            I   Y+
Sbjct: 1791 IVKRYI 1796


>gi|121716158|ref|XP_001275688.1| rna-dependent rna polymerase [Aspergillus clavatus NRRL 1]
 gi|119403845|gb|EAW14262.1| rna-dependent rna polymerase [Aspergillus clavatus NRRL 1]
          Length = 1203

 Score =  244 bits (623), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 202/666 (30%), Positives = 311/666 (46%), Gaps = 104/666 (15%)

Query: 403  GPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNA 462
            GP Q  ++  + +++ITP++     PE E  NR+LR++ +  D F+RV F DE       
Sbjct: 416  GPTQ--NLALIHKVMITPSRITLHGPEPEPFNRILRRFPNHHDYFIRVQFCDEQGG---- 469

Query: 463  NVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAW 522
                        D+  +S      VF R +++L+ G  + GR + FL +S S LR  S W
Sbjct: 470  ------------DLHFSSRVTYDEVFSRFKNVLTNGIQIAGRTYYFLGWSHSSLRSHSVW 517

Query: 523  FFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVD-PELPDI- 579
                    S + I K +G F+   + A+CAAR+GQ FS T   + V    +   E+PD+ 
Sbjct: 518  -------ASAVCIIKALGDFSKITSPARCAARIGQAFSETPFAIPVEDNTITIEEVPDLA 570

Query: 580  -KRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPP---PCAYQIRYAGCKGVVACWPAKGD 635
             K     FSDG+G     L++ V + +  ++ P    P  +QIR  G KG++A   ++  
Sbjct: 571  SKDGQRFFSDGVGS----LSLNVLEMIWSNIPPKKGKPTGFQIRLGGAKGMIAI-DSRLT 625

Query: 636  GIRMSLRESMNKFQSHHTTLEICSW-TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSML 694
            G  + +R SM KFQ     LEIC   ++  P  LNRQ+I +L  + V ++ F+ +Q+  L
Sbjct: 626  GSVIRIRPSMIKFQGEMRDLEICDMASKPIPLVLNRQMIKILEDMGVAEDWFFRLQNQEL 685

Query: 695  SKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTE-------PHLRGMLTCIRA 747
            + L  +   +    +        Q     I L   F    +       P LR ++  +  
Sbjct: 686  TYLRSITASA----QNTAVFIKRQAVGDCIGLFRLFRQCHQWKINYKVPFLRSLVEAVIL 741

Query: 748  AQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKK 807
             +L  L+ KARI V  G  L G +DE   L+  + ++  +        +  G   A    
Sbjct: 742  RELRLLKHKARIPVDKGITLFGIIDETEYLQENEVYVTFN--------TIQGRPVAPP-- 791

Query: 808  LQVIKGFVVIAKNPCLHPGDIRI-LEAV---DHPELHHLYDCLVFPQKGDRPHTNEASGS 863
                 G V++ ++P L+ GDI+I L  V   DHP   H  +C+VF  KGDR   ++ SG 
Sbjct: 792  ---TAGPVLVTRSPALYDGDIQICLNTVPPEDHPLRRH-RNCIVFSAKGDRDLPSQLSGG 847

Query: 864  DLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGT 923
            DLDGD+Y + WD    P  K+++ P +Y   E   + R V+  D+ +FF   M  ++LG 
Sbjct: 848  DLDGDIYNIIWDPEARP--KRTFAPADYPRVEPVNIGRLVEVHDMADFFIDFMKTDHLGV 905

Query: 924  ICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHL--KPKLYPDFM-- 979
            I   H++ AD  + G    +C  LA+L +TAVDF KTG  V M  HL       PDF+  
Sbjct: 906  IAIRHMIMADQLDEGTSHPDCRKLAQLHSTAVDFSKTGIPVQM-EHLPRGNNFRPDFLAP 964

Query: 980  GKEAY----------------------------QSYKSNKILGRLYR--QSKDAYDEDIS 1009
            G +AY                            + Y+S KILG+LYR    +  +  DI 
Sbjct: 965  GPQAYMYNKSAIHMDQYIARTEYDEDDDTEPPRKYYRSEKILGKLYRAIDERKIWSNDIQ 1024

Query: 1010 VSSEVD 1015
              + VD
Sbjct: 1025 CKAAVD 1030


>gi|239614149|gb|EEQ91136.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ER-3]
          Length = 1701

 Score =  243 bits (620), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 170/564 (30%), Positives = 273/564 (48%), Gaps = 51/564 (9%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
            + F + + +   M    IN++ + ++F   L     +     L+H+   K   +D     
Sbjct: 810  LPFSVRYQLEVCMSHRYINEYTIEETFVRRLVQLGEKKAKELLEHVAMNKTIYYDP---- 865

Query: 388  KLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRF 447
              ++ + +  P+     +       +R   +TP+      P V+ SNRV R +++ ADRF
Sbjct: 866  --MEIFNIPFPKGATNGRIPGHCCYIRSADVTPSTICYDIPSVDTSNRVFRYHREHADRF 923

Query: 448  LRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFS 507
            LRV F DE            +I  I  + + NS   + +V+ RV   L  G  +  R++ 
Sbjct: 924  LRVRFCDEK-----------YIGKIYPNNSGNSQCME-KVYARVLRTLQHGITIGDRRYE 971

Query: 508  FLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVE 566
            FLAF +SQLR+  A+FF+     +  +I+  MG   + + +AK AAR+GQCFS+T A   
Sbjct: 972  FLAFGNSQLREHGAYFFASLPHLTAANIRAQMGDLNNIRVVAKYAARLGQCFSTTRAVTS 1031

Query: 567  VPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKL--KLDVNPPPCAYQIRYAGCK 624
             P  ++  ++ DI+RNGYVFSDG+G+++  L   +   L  K     PP  +Q R  GCK
Sbjct: 1032 CP-VQIK-KIDDIERNGYVFSDGVGRLSHFLTQMIQSDLGIKTPSGEPPSVFQFRLGGCK 1089

Query: 625  GVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDE 684
            G++A  P +     + +R S  KF + H  LEI  ++ F    LNRQ+I +LS L  PDE
Sbjct: 1090 GILAVSP-EARQREVHIRRSQFKFPASHNGLEIIRYSHFSYATLNRQLILILSALGTPDE 1148

Query: 685  MFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSAGFNPQTEPHLRGML 742
            +F +    ML+ L Q + D D A  +L         T  +  M+  GF    EP +  +L
Sbjct: 1149 VFIAKLSMMLANLEQAMTDEDKAVSLLQKYVDPNQMTLVLADMIRDGFQGSREPFVSSLL 1208

Query: 743  TCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRF 802
               R  Q+  L+EKA+I +  G +L+GC+DE   L+G   + + + P   + + +     
Sbjct: 1209 ELWRTWQIKYLKEKAKIAIDEGAFLLGCIDETKTLKG---YFRSARPKANSTYQERVDCL 1265

Query: 803  AET---------KKLQVIKGFVVIAKNPCLHPGDIRILEAVD--HPELHHLYDCLVFPQK 851
             E           K  VI+G  ++A+NP LHPGDIR+++A+    PE    +D  +    
Sbjct: 1266 PEIFVQVWRHSEGKYAVIEGLCILARNPSLHPGDIRVVKAIQFLSPEERPQFDKRIL--- 1322

Query: 852  GDRPHTNEASGSDLDGDLYFVTWD 875
                     SG ++D  L  V  D
Sbjct: 1323 --------KSGIEVDEKLLSVATD 1338


>gi|443899804|dbj|GAC77133.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
          Length = 1455

 Score =  242 bits (618), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 196/642 (30%), Positives = 306/642 (47%), Gaps = 86/642 (13%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
              V  + ITPT+     P ++ SNRVLR + D    F+RV F DE               
Sbjct: 441  AHVYHVTITPTRMLLDGPFMDASNRVLRMFPDFGSHFVRVAFCDEDGDRF---------- 490

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE--DG 528
            P+ R   L+    ++ V +R+   L  G  + GRKF  LA+S S L     WF +   D 
Sbjct: 491  PVSRH-DLDGIDSESFVRERIGDPLKYGIAIAGRKFEALAWSGSGLGSHHCWFVTAFTDK 549

Query: 529  KTSVLD---IKKWMGRF--TDKNIAKCAARMGQCFSSTYAT-------VEVPPTEVD--- 573
               + D   I++ +G F   D+  A+  AR+ Q FS+T ++       VE+ P E+    
Sbjct: 550  VGKLWDAERIRQALGNFRSIDRYPARLGARLSQAFSATSSSITIENDWVEIIPDELSNAQ 609

Query: 574  --PELPDIKRNGYVFSDGIGKITPDLAMEVAQKL----------KLDVNPP---PCAYQI 618
                 P+  R  Y+ +DG+G+I+  L  E+   L          +L    P   P A Q 
Sbjct: 610  MPSNGPERDRKYYLLTDGVGQISKSLLDEIWHALCETRGMRREWRLSQQDPRRIPSAIQF 669

Query: 619  RYAGCKGVVACWPAKGDGIRMSLRESMNKFQS-HHTTLEICSWTRFQP--GFLNRQIITL 675
            R  G KGV+ C      G +M +RESM KF +  H  LE+ + + F P    LNR +I  
Sbjct: 670  RCGGAKGVL-CLNPTLKGKKMIMRESMIKFSAPKHRELEVAAHS-FSPLPARLNRPLINA 727

Query: 676  LSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLS-----AGF 730
            L  L V D++F ++Q S +    +       A +++ +           +        G 
Sbjct: 728  LEDLGVKDDVFLNLQASAVESAQEARKSFKRASQLMGSFAMSDAAEMHKLFRRLDSVIGM 787

Query: 731  NP-QTEPH--LRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVS 787
             P + +P   L  + T + AA L  L+ KARI V  G  L+G +DE   LE GQ F QV+
Sbjct: 788  RPDELDPDSILHRLCTIVIAAALGDLKRKARIPV-QGCTLIGVVDEFNFLERGQIFAQVN 846

Query: 788  EPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH---HLYD 844
            +               +  + ++++G V++ ++P +HPGD+R++ AV  P  H    L +
Sbjct: 847  D--------------RDQDEFRIVEGKVMVGRSPTIHPGDVRVVSAVKPPPGHPLLQLRN 892

Query: 845  CLVFPQKG-DRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPV 903
             +VF +    RP  +  SG DLDGD+Y +  D++L P   +S  P +Y +   ++L RP 
Sbjct: 893  VIVFSKSPFGRPLQSILSGGDLDGDIYTIYEDKDLFPTRTES--PGQYKSVPPRSLARPC 950

Query: 904  DQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKI 963
               D+ +FF  +++N+ +G +   H+  AD S   +LD +CI LA+L A AVD+ KTG+ 
Sbjct: 951  TFEDLADFFVDYVINDQVGLVSTFHLHIADTSPLHSLDPDCIKLAQLHAKAVDYRKTGQA 1010

Query: 964  -----VTMPAHLKPKLYPDFMGKEAYQS--YKSNKILGRLYR 998
                 V MP    P+  PDF+ +       Y S + LG+L+R
Sbjct: 1011 VHRRDVPMPPFNSPR--PDFLAQRPAGPGIYSSTRALGKLFR 1050


>gi|388857678|emb|CCF48827.1| related to RNA-dependent RNA polymerase [Ustilago hordei]
          Length = 1462

 Score =  241 bits (615), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 202/674 (29%), Positives = 321/674 (47%), Gaps = 93/674 (13%)

Query: 385  KRLKLVQEWLLKDPELYKGPKQIDDIV-----EVRRLVITPTKAYCLPPEVELSNRVLRK 439
            +R+++ Q+ L++   +   P   D +V     +V  + ITPT+     P ++ SNRVLR 
Sbjct: 425  QRIEVEQQRLIRQDAMEADPLN-DQVVTTATAQVYHVAITPTRMLLEGPFMDASNRVLRL 483

Query: 440  YKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGF 499
            + +    F+RV F DE               P+ R   L+    ++ V +R+   L  G 
Sbjct: 484  FPEFGSHFVRVAFCDEDGDRF----------PVSRH-DLHGIDSESFVRERIGDPLKHGI 532

Query: 500  YLCGRKFSFLAFSSSQLRDCSAWFFS----EDGKT-SVLDIKKWMGRF--TDKNIAKCAA 552
             + GRKF  LA+S S L     WF +    +DG   +   I++ +G F   D+  A+  A
Sbjct: 533  AIAGRKFEALAWSGSGLGSHHCWFVTAFTDKDGNLWNAERIRQSLGDFQGVDRYPARLGA 592

Query: 553  RMGQCFSSTYATVEVPPTEVDPELPD-----IKRNG--------YVFSDGIGKITPDLAM 599
            R+ Q FS+T +T+++    V     D     +  NG        Y+ +DG+G+I+ +L  
Sbjct: 593  RLSQAFSATSSTIKINDDWVKIVTDDHSNCAMPSNGPNEREKQFYLLTDGVGEISRELRD 652

Query: 600  EVAQKL-------------KLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMN 646
            ++ ++L             + D    P A Q RY G KGV+ C   +  G  M +R SM 
Sbjct: 653  DIWRELCSAKNMLREWQLSQQDARRIPSAIQFRYGGAKGVL-CLNPQLRGKVMKVRHSMI 711

Query: 647  KFQS-HHTTLEICSWTRFQP--GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVD 703
            KF +  H  LE+ + T F P    LNR +I  L  L VP ++F S+Q+  +        D
Sbjct: 712  KFSAPKHRDLEVAT-TSFHPLPARLNRPLINALEDLGVPADVFVSLQNKAVESAQLARKD 770

Query: 704  SDVAFEVLTA-ACAEQGNTAAIMLSA----GFNPQTEPH---LRGMLTCIRAAQLWGLRE 755
               A +++ + A ++      +        G  P    H   L  + T + AA L  L+ 
Sbjct: 771  FKHASQLMRSFALSDTAEVHKLFHRLDSILGITPDNLHHDSILNRLCTIVIAAALGDLKR 830

Query: 756  KARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFV 815
            KARI V  G  L+G +DE   L   + F+QV++               E  + ++I+G V
Sbjct: 831  KARIPV-DGCTLIGVVDEFNYLGKNEIFVQVND--------------KEDGQYRIIEGRV 875

Query: 816  VIAKNPCLHPGDIRILEAVDHPELH---HLYDCLVFPQK-GDRPHTNEASGSDLDGDLYF 871
            +I ++P +HPGD+RI+ AV  P  H    L + +VF +    RP  +  SG+D DGD++ 
Sbjct: 876  MIGRSPTIHPGDVRIVTAVKPPPTHPLRQLRNVVVFNKHPHGRPLQSMLSGADFDGDIFT 935

Query: 872  VTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVH 931
            +  DE L P  K+   P  Y     + L RP    D+ +FF   ++N+ +G +   H+  
Sbjct: 936  IYEDEQLFP--KQMASPGVYKNTPPRALARPCTFEDLADFFVDFVINDQIGLVSTFHLHI 993

Query: 932  ADHSEYGALDENCILLAELAATAVDFPKTG-----KIVTMPAHLKPKLYPDFMGKEAYQS 986
            AD SE  +LD +C+ LA+L A AVD+ KTG     K V MP    P+  PDF+ +     
Sbjct: 994  ADQSELHSLDPDCVKLAQLHAKAVDYRKTGQAVHRKDVPMPPLNSPR--PDFLAQRPVGQ 1051

Query: 987  --YKSNKILGRLYR 998
              Y S++ LG+L+R
Sbjct: 1052 GIYASSRALGKLFR 1065


>gi|308458494|ref|XP_003091586.1| hypothetical protein CRE_24272 [Caenorhabditis remanei]
 gi|308255699|gb|EFO99651.1| hypothetical protein CRE_24272 [Caenorhabditis remanei]
          Length = 1634

 Score =  241 bits (615), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 238/879 (27%), Positives = 389/879 (44%), Gaps = 150/879 (17%)

Query: 412  EVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAP 471
            +VR++++TPT+   L PE  ++NR +R       R +R T  D+ LQ M  N+L      
Sbjct: 446  KVRKVILTPTRKIYLAPEKIMANRAIRGACHDGTRIIRATLRDDNLQKMRFNLLGNLQG- 504

Query: 472  IVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTS 531
               +ITL                L  GF +  R F +LA S+SQ+R+  A+F        
Sbjct: 505  ---EITLGH--------------LRDGFGIMERAFGYLASSNSQMREGGAYFMERYDAEQ 547

Query: 532  VLDIKK------------------W--MGRFTDK-NIAKCAARMGQCFSSTYA--TVEVP 568
            + + K+                  W  +G+F D  +I K  AR+GQCF+       V + 
Sbjct: 548  LAEYKEEHPGEPVPHSFKPMIKEYWNVLGKFVDTGSIPKALARLGQCFTQARPIDNVSIS 607

Query: 569  PTEVDPELPD------IKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAG 622
            PT+    +PD       +   Y+++DG+G I+  LA ++   L   +   PCA+Q R+ G
Sbjct: 608  PTDYKM-IPDAIGGKNTEGKPYMYTDGVGCISAGLAEQIFGSL--GIKHVPCAFQFRFRG 664

Query: 623  CKGVVAC----------WPAKG---DGIRMSLRESMNKFQS--HHTTLEICSWTRFQPGF 667
             KG++A           W + G     I+   R+S  KF+S      +E+  W+   P  
Sbjct: 665  FKGMLAIDPNIDHTANHWESLGLRYHRIKCLFRKSQLKFESCQEDEQMEMVKWSSPTPVT 724

Query: 668  LNRQIITLLSTLNVPDEMFWSMQDS-MLSKLNQMLVDSDVAFEVLTAACAE--QG----- 719
            LN+  I +L  ++    +    + S  + +L  M +D+  A  V    C E  +G     
Sbjct: 725  LNKPFINILDQVSGLQSLECHKRVSGRVEELLSMEMDNYSAAVVNEEKCREVLEGMPRRI 784

Query: 720  NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVL 777
            + A++    GF   TEP  R ++     + +  L  K +I +P   GR + G  DE G L
Sbjct: 785  HFASMERKNGFVLSTEPFFRSLVKATIDSAMSRLLRKLQIPIPGNLGRSMFGITDETGQL 844

Query: 778  EGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP 837
            + GQ F++ +E    N   KH SR    KK   + G V++ K P L  GD+R+ EAVD P
Sbjct: 845  QYGQVFVRYTE----NVNEKHPSRH---KKTITLTGKVLVTKFPSLCEGDVRMYEAVDIP 897

Query: 838  ELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAK 897
            ELHHL D +VFPQ G R   +E +GSDLDGD Y V WD  L    +++    EY++ +  
Sbjct: 898  ELHHLQDVIVFPQTGPRSQPDEMAGSDLDGDEYAVIWDPQLF--FERNQKAFEYSSEKPD 955

Query: 898  TLTRPVDQRDIIE-FFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVD 956
                  +  D    F+ ++   E++G     H+  +D  ++G   + C  +A     A+D
Sbjct: 956  QHFAAEEMDDGFHWFYTEYAKQEDVGVTSINHLHQSD--QFGINSDVCRSIAIKNGMALD 1013

Query: 957  FPKTGKIVTMPAHL-----------KPKLYPDFMGK--EAYQSYKSNKILGRLYRQSKDA 1003
            + K+G     P  L           + +  PD+         SY+S+++LG+LYR+ +  
Sbjct: 1014 YAKSG---VAPPPLTSVWSSEGPPERSERRPDYANNRYNGSPSYQSSRLLGQLYRELRCV 1070

Query: 1004 YDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREE 1063
             D    V SE D   V +  D  L      +F+  A      Y+ ++  +++ Y V  E 
Sbjct: 1071 ND----VCSE-DSKQVPVAIDPLLTWQGWEEFVDGAHLHMTRYNAEVRSIMDTYGVATEA 1125

Query: 1064 ELVTGHIWSMPKYNSRKQGE----------LKERLKHSYSALRKEFRQVFEKMDSDCELL 1113
            E+ +G    +   +S K+ +          ++ ++   +   R++F + F   D+    L
Sbjct: 1126 EIFSGCYREIRNRHSEKEQDDMSIYDTESVIETQMTRVFRKYREQFFEEFAPGDNGYMRL 1185

Query: 1114 S--------EDEKNAL----------FERKASAWYQVTYHPEWVKKSLDLQEQDSARSVV 1155
            +        E+EK+ L             KA A+Y+  Y     + S+D +         
Sbjct: 1186 TEVENPRDDEEEKDVLRRVCRQPTGRMMAKAVAYYRDCYTA--AQNSVDCR--------- 1234

Query: 1156 LLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVA 1194
             LSFAWIA D L    +R + + N     PV  L ++ A
Sbjct: 1235 -LSFAWIAYDILN--TVRGKNLLNSGDMAPVTRLPQFQA 1270


>gi|116200327|ref|XP_001225975.1| hypothetical protein CHGG_08319 [Chaetomium globosum CBS 148.51]
 gi|88179598|gb|EAQ87066.1| hypothetical protein CHGG_08319 [Chaetomium globosum CBS 148.51]
          Length = 1176

 Score =  240 bits (613), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 219/753 (29%), Positives = 348/753 (46%), Gaps = 107/753 (14%)

Query: 298  SLSRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSD----- 352
            S  RPI +R   D    +       +    + F ++FL+ A+M    ++   +S      
Sbjct: 292  SFHRPIAVRFS-DAMTSLRSQLAEQNTTGTLPFGLLFLLQALMANSYLHPTTISALAQKL 350

Query: 353  -SFFDLLR--GQSRE-VNVAALKHIYSY-KWPVFDACKRLKLVQ---EWLLKDPELYKGP 404
               F+  R  G ++  V+V A K ++++  +P+ D    +  V    E+L K+  L +  
Sbjct: 351  AQRFEKARKVGDTQPPVSVDAFKKLFNWIDYPMPDGDPTMFEVDGILEYLEKEERLIRES 410

Query: 405  -------KQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGL 457
                   ++  +   + R V+TP++     PE E  NRVLRKY D +  F+R  F DE  
Sbjct: 411  SAHRSRMRETQNRALIFRAVVTPSRITLHGPEPEPMNRVLRKYPDHS-YFIRTQFCDENG 469

Query: 458  QTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLR 517
            Q +  N            ++L+S      ++ R +S+LS G  + GR +  L FS S LR
Sbjct: 470  QDLFFNA----------RVSLDS------IYDRFKSVLSNGIQVAGRVYKLLGFSHSSLR 513

Query: 518  DCSAWF---FSEDGKTSVLD-IKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEV 572
              SAW    F   G+  +   I   +G F   K+ A+ AAR+GQ FS T   +++    V
Sbjct: 514  AHSAWLSAPFFHQGQVQIPTLIVTGLGNFDKIKSPARRAARIGQAFSETPWAIDLVAHSV 573

Query: 573  DP-ELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPP----PCAYQIRYAGCKGVV 627
            +  E+ DI RN  VFSDG+GK++ D+A     +L  DV P     P  +QIR AG KG++
Sbjct: 574  EVWEIDDIVRNEEVFSDGVGKLSQDVA-----RLVYDVIPRSKGFPTCFQIRQAGAKGML 628

Query: 628  ACWPAKGDGIRMSLRESMNKFQSHHTTLEICSW-TRFQPGFLNRQIITLLSTLNVPDEMF 686
            A  P  G G  + +R SM+KF S    LEIC   +   P  LNRQ+I +L  +  P++ F
Sbjct: 629  AIDPGLG-GKVICIRPSMSKFDSTDKQLEICDMASNPMPMVLNRQLIKILEDMGAPNQWF 687

Query: 687  WSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ-GNTAAI------MLSAGFNPQTEPHLR 739
             ++Q   L +L  +   S   +   +   A++ G +  +      + + G + + +  LR
Sbjct: 688  LNLQSRELQRLRTI---SSTVYNTASFLRAQRIGESIRLHKFLRQIETMGLDYRRDDFLR 744

Query: 740  GMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHG 799
            G +  +  ++L  L+ KARI V  G  L G +DE G L+ G+ ++          F    
Sbjct: 745  GAVEAVLLSELRLLKHKARIPVRNGMTLFGIMDETGFLKEGEVYV---------TFDPEE 795

Query: 800  SRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNE 859
             R ++                    PG  R+L +                  G+R  +N+
Sbjct: 796  DRHSQP-------------------PGPGRVLSSS--------AIASSSASGGERSPSNQ 828

Query: 860  ASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNE 919
             SG DLDGD++ + WD  ++  + +++ P  Y   +   L RPV   DI  FF   M  +
Sbjct: 829  LSGGDLDGDVFHIIWDPAVV-NAVRTFKPAAYPRVQPLELDRPVTPEDIAAFFVDFMRTD 887

Query: 920  NLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFM 979
            +LG I   H++ AD  E G LD +C  LAEL + A+       I  M  H  P+   D  
Sbjct: 888  HLGVIATRHMILADQREKGTLDGDCKKLAELHSAAITIHDKSAI-DMEEHFAPRGDDDDD 946

Query: 980  GKEA--YQSYKSNKILGRLYR--QSKDAYDEDI 1008
                  +Q Y+S+KILG+LYR  + +  + EDI
Sbjct: 947  DDSGPRHQYYRSDKILGQLYRAVEEQKIWAEDI 979


>gi|403168646|ref|XP_003328239.2| hypothetical protein PGTG_09533 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|375167590|gb|EFP83820.2| hypothetical protein PGTG_09533 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1246

 Score =  240 bits (612), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 195/655 (29%), Positives = 312/655 (47%), Gaps = 84/655 (12%)

Query: 409  DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYF 468
            D    R + ITPT+     P++E SN +LR Y+   + FLRV+  DE    + A+     
Sbjct: 430  DSFPCRTVTITPTRLSLQGPQIEQSNSILRLYQQ-TENFLRVSLADETGHRLRAS----- 483

Query: 469  IAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAW----FF 524
                 R++ ++       +  R R  L+ G  LCGRKF FL +S+S L+D  AW    F+
Sbjct: 484  -----REVEIHHL-----LRNRYRPFLTKGMILCGRKFEFLGYSNSALKDHQAWFVCPFY 533

Query: 525  SEDGKTSVLDIKKWMGRFTD--KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRN 582
              D   +   I+  +G F+   +  A+  AR+ Q F+ST  ++ + P+EV   + D++RN
Sbjct: 534  KGDQLVTAASIRAKLGDFSKVIRIPARYMARIAQAFTSTRRSLTLRPSEVT-RMDDVERN 592

Query: 583  GYVFSDGIGKITPDLAMEVAQKL---KLDVNPPPCAYQIRYAGCKGVVACWPA-KGDGIR 638
            G  F+DG+G I+ DL  EV + L    +  +     YQIR  G KG+++  P  KG  +R
Sbjct: 593  GSCFTDGVGTISKDLVDEVHRVLNVGNIRKSISSTCYQIRLGGFKGMLSLDPTLKGKVVR 652

Query: 639  MSLRESMNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSK 696
            M  R SM+KF +  + TL+I  ++T+    +LNR +I LL  L +P E+F  +QD ++ K
Sbjct: 653  M--RPSMDKFDAPDSLTLDIAGTFTKPLVAYLNRPLIKLLEDLGIPSEVFLRLQDKIIRK 710

Query: 697  LNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQ------- 749
            +        +A  ++       G+    ML           L  +L   RA +       
Sbjct: 711  VENSRSSPKLAGNLMQQYSMGSGSGMPSMLHK---------LSELLVDDRAVESDFIEEC 761

Query: 750  --------LWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSR 801
                    L  L+ + RI +     L+G  DE   L     ++ V  P     +      
Sbjct: 762  YDLMTVQCLRDLKYRGRIPLDKSYTLVGVADEDNFLPPDSIYVCVQTPNSAPMY------ 815

Query: 802  FAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDH------PELHHLYDCLVFPQKGDRP 855
                     ++G   + ++P LHPGD+R++ AV        P L  L +C+ FP +G+R 
Sbjct: 816  ---------LEGSFAVTRSPSLHPGDVRVVNAVGKLDPKRAPRLSSLVNCVAFPIQGERS 866

Query: 856  HTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKH 915
              +   G DLDGDL+ V     L+P   K      Y+  E + L R     D  +FF  +
Sbjct: 867  LPSCLGGGDLDGDLFTVIGLPQLVPKRSKIQRAASYSPPEMRKLDRDCTIADGADFFLDY 926

Query: 916  MVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKP--K 973
            + ++ +G I   H+  AD    G L+E+CI LAEL + AVD+PKTG  V + +   P  +
Sbjct: 927  ISSDLVGMIATRHLHIADQCPEGTLNESCIKLAELHSDAVDYPKTGVPVNIRSLPNPPVR 986

Query: 974  LYPDFM------GKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIH 1022
            + PDFM       KE    Y+S  +LG+L+R+      +    +S++D +  ++H
Sbjct: 987  MKPDFMCHEHDSSKEGEDYYESPNVLGKLFREIPADKIDIFIPASKIDDDIAELH 1041


>gi|328855950|gb|EGG05073.1| hypothetical protein MELLADRAFT_64236 [Melampsora larici-populina
            98AG31]
          Length = 1240

 Score =  240 bits (612), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 202/647 (31%), Positives = 319/647 (49%), Gaps = 91/647 (14%)

Query: 397  DPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEG 456
            DP L  G     D    R + ITP++     P  E SN VLR Y+D  + FLR++  +E 
Sbjct: 432  DPRLLSG-----DSFPCRTVTITPSRFILEGPVTEQSNSVLRMYRDTHN-FLRISIREEN 485

Query: 457  LQTMNANVLSYFIAPIVRDITLNSFSQKTRVFK-RVRSILSGGFYLCGRKFSFLAFSSSQ 515
              T+  +          RD+ +       R+ K R    L+ G  LCGRKF FL +SSS 
Sbjct: 486  GLTLRPD----------RDVDI------LRLLKTRYLDFLTQGLNLCGRKFEFLGYSSSA 529

Query: 516  LRDCSAWF----FSEDGKTSVLDIKKWMGRFTDK-NI-AKCAARMGQCFSSTYATVEVPP 569
            LR+  AWF    +  D   +   I++ +G F+   NI A+  AR+ Q F+ST  ++ + P
Sbjct: 530  LREHQAWFVCPFYKGDSLVTAASIRQRLGDFSKVINIPARYMARVAQAFTSTRQSLTLLP 589

Query: 570  TEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV-------NPPPCAYQIRYAG 622
            +++   + D++RNG  F+DG+G I+PDLA +V + L   +       +     +QIR  G
Sbjct: 590  SQI-VRIEDVERNGSCFTDGVGTISPDLARQVDEVLSAGLPSRKRRHHANSSCFQIRLGG 648

Query: 623  CKGVVACWPAKGDGIRMSLRESMNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLN 680
             KG+++  P       + +R SM+KF S  + TL+I  S+TR  P +LNR +I +L  L 
Sbjct: 649  FKGMLSVDPTLKQAC-VCVRPSMDKFVSPDSLTLDIAGSFTRPLPAYLNRPMIKVLEDLG 707

Query: 681  VPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL-TAACAEQGNTAAIMLSAGF------NPQ 733
            + +++F ++Q  ++SK+     +   A E++   + A      +I+   G       N Q
Sbjct: 708  IHEQVFLALQREIVSKVEHSRTNLRRASELMDQLSMARTSGMPSILRQLGTLMGDESNTQ 767

Query: 734  T----EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEP 789
            +    E +   ++ C R      L+ +ARI + A   L+G  DE  VL            
Sbjct: 768  SDFIEECYDLMIMQCFR-----DLKYRARIPLDASYTLVGVADEDQVLPPN--------- 813

Query: 790  FLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDH------PELHHLY 843
            F+  C    G      K    ++G + I+++PCLHPGD+R++  +        P L+ L 
Sbjct: 814  FVYACIQYPG------KAPFYLEGPITISRSPCLHPGDVRVVTGIGKLDLERAPRLNALR 867

Query: 844  DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPV 903
            +C+VF   G R   +   G DLDGDLY +     LIP + +  PP  Y A E K L RP 
Sbjct: 868  NCVVFSVAGMRSLPSCLGGGDLDGDLYTLITLPELIPATARLHPPASYTAPEMKRLDRPC 927

Query: 904  DQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKI 963
               D   FF  ++ ++ +G I + H+  AD ++ G  D+ C+ L  L + AVD+PKTG  
Sbjct: 928  TIEDGAAFFLDYISSDLVGVIASRHLHIADQADQGTRDDLCLELVSLHSDAVDYPKTGVP 987

Query: 964  VTMPAHLKP--KLYPDFM---------GKEAYQSYKSNKILGRLYRQ 999
            V +    +   ++ PDFM         G + Y+   S K+LG+L+RQ
Sbjct: 988  VAIDQLPRAPNRMKPDFMCPEHHERREGDDYYE---SQKVLGKLFRQ 1031


>gi|328848635|gb|EGF97840.1| hypothetical protein MELLADRAFT_114044 [Melampsora larici-populina
            98AG31]
          Length = 1135

 Score =  239 bits (611), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 202/647 (31%), Positives = 319/647 (49%), Gaps = 91/647 (14%)

Query: 397  DPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEG 456
            DP L  G     D    R + ITP++     P  E SN VLR Y+D  + FLR++  +E 
Sbjct: 432  DPRLLSG-----DSFPCRTVTITPSRFILEGPVTEQSNSVLRMYRDTHN-FLRISIREEN 485

Query: 457  LQTMNANVLSYFIAPIVRDITLNSFSQKTRVFK-RVRSILSGGFYLCGRKFSFLAFSSSQ 515
              T+  +          RD+ +       R+ K R    L+ G  LCGRKF FL +SSS 
Sbjct: 486  GLTLRPD----------RDVDI------LRLLKTRYLDFLTQGLNLCGRKFEFLGYSSSA 529

Query: 516  LRDCSAWF----FSEDGKTSVLDIKKWMGRFTDK-NI-AKCAARMGQCFSSTYATVEVPP 569
            LR+  AWF    +  D   +   I++ +G F+   NI A+  AR+ Q F+ST  ++ + P
Sbjct: 530  LREHQAWFVCPFYKGDSLVTAASIRQRLGDFSKVINIPARYMARVAQAFTSTRQSLTLLP 589

Query: 570  TEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV-------NPPPCAYQIRYAG 622
            +++   + D++RNG  F+DG+G I+PDLA +V + L   +       +     +QIR  G
Sbjct: 590  SQI-VRIEDVERNGSCFTDGVGTISPDLARQVDEVLSAGLPSRKRRHHAKSSCFQIRLGG 648

Query: 623  CKGVVACWPAKGDGIRMSLRESMNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLN 680
             KG+++  P       + +R SM+KF S  + TL+I  S+TR  P +LNR +I +L  L 
Sbjct: 649  FKGMLSVDPTLKQAC-VCVRPSMDKFVSPDSLTLDIAGSFTRPLPAYLNRPMIKVLEDLG 707

Query: 681  VPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL-TAACAEQGNTAAIMLSAGF------NPQ 733
            + +++F ++Q  ++SK+     +   A E++   + A      +I+   G       N Q
Sbjct: 708  IHEQVFLALQREIVSKVEHSRTNLRRASELMDQLSMARTSGMPSILRQLGTLMGDEGNTQ 767

Query: 734  T----EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEP 789
            +    E +   ++ C R      L+ +ARI + A   L+G  DE  VL            
Sbjct: 768  SDFIEECYDLMIMQCFR-----DLKYRARIPLDASYTLVGVADEDQVLPPN--------- 813

Query: 790  FLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDH------PELHHLY 843
            F+  C    G      K    ++G + I+++PCLHPGD+R++  +        P L+ L 
Sbjct: 814  FVYACIQYPG------KAPFYLEGPITISRSPCLHPGDVRVVTGIGKLDLERAPRLNALR 867

Query: 844  DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPV 903
            +C+VF   G R   +   G DLDGDLY +     LIP + +  PP  Y A E K L RP 
Sbjct: 868  NCVVFSVAGMRSLPSCLGGGDLDGDLYTLITLPELIPATARLHPPASYTAPEMKRLDRPC 927

Query: 904  DQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKI 963
               D   FF  ++ ++ +G I + H+  AD ++ G  D+ C+ L  L + AVD+PKTG  
Sbjct: 928  TIEDGAAFFLDYISSDLVGVIASRHLHIADQADQGTRDDLCLELVSLHSDAVDYPKTGVP 987

Query: 964  VTMPAHLKP--KLYPDFM---------GKEAYQSYKSNKILGRLYRQ 999
            V +    +   ++ PDFM         G + Y+   S K+LG+L+RQ
Sbjct: 988  VAIDQLPRAPNRMKPDFMCPEHHERREGDDYYE---SQKVLGKLFRQ 1031


>gi|403164222|ref|XP_003324286.2| hypothetical protein PGTG_05092 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|375164936|gb|EFP79867.2| hypothetical protein PGTG_05092 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1282

 Score =  239 bits (610), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 201/650 (30%), Positives = 314/650 (48%), Gaps = 98/650 (15%)

Query: 400  LYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQT 459
            L+   +++D++ + R + ITPT      P  E SN +LR Y D    F+RV   DE    
Sbjct: 461  LFDRQERLDNVFKCRSVTITPTTLILEGPLPEESNSILRLY-DYNSAFIRVAIRDEDGSN 519

Query: 460  MNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDC 519
             + +          R++   +F ++     R R  L  G Y+ GR+F FL +SSS L+  
Sbjct: 520  YHHD----------REVDGRTFLKQ-----RYRPFLVDGLYVAGRRFMFLGYSSSALKCH 564

Query: 520  SAWF---FSEDGKT-SVLDIKKWMGRFT--DKNIAKCAARMGQCFSSTYATVEVPPTEVD 573
             AWF   F   G   S   I+  MG F+  ++  A+  AR+ Q F++T   V + P+++ 
Sbjct: 565  QAWFVCPFVHKGAVMSAEKIRSRMGTFSLVNRIPARYMARIAQAFTTTQKAVTLAPSQLR 624

Query: 574  PELPDIKRNGYVFSDGIGKITPDLAMEVAQKL--------KLDVNPPPCAYQIRYAGCKG 625
             ++PD++RNG VF+DG+G I+P LA +V Q L        + +     C YQIR  G KG
Sbjct: 625  -KIPDVQRNGSVFTDGVGTISPSLARQVEQALLGTMMVLKRRNAINSSC-YQIRLGGYKG 682

Query: 626  VVACWPAKGDGIRMSLRESMNKFQSHHTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDE 684
            +++  P     I + LR SM+KF +   TL+I  S+ R  P FLNR +I +L  L +P  
Sbjct: 683  MLSIDPTLAGEI-VGLRPSMSKFDADSYTLDIASSFRRPLPSFLNRPLIKILEDLKIPSH 741

Query: 685  MFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLT- 743
            +F + Q   +  + +    S  +F       A+    A +  S+ F P+       ++  
Sbjct: 742  VFMTAQQKTVRSIER----SRESFR----QSAKLMEKAGLGFSSSF-PKILKRFSSLMRT 792

Query: 744  -------------CIRAAQLWGLRE---KARIFVPAGRWLMGCLDELGVLEGGQCFIQVS 787
                         C+  A +  LR+   +ARI +     L+G  DE   L+ GQ +  V 
Sbjct: 793  DNPDEVRSTFIDDCLDLAVIECLRDLKYRARIPLEGSYTLVGVADEEFCLQEGQIYACVQ 852

Query: 788  EPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP-----ELHHL 842
            E               + K  + + G + I+++P +HPGD++++ A+  P     +L  L
Sbjct: 853  E---------------KGKPRKYLSGKIAISRSPSIHPGDVQVVHAIGRPPPGSEKLGAL 897

Query: 843  YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRP 902
             +C+VF   G R   +   G DLDGDLY +  D  +IP  K    P  Y+  +   L +P
Sbjct: 898  VNCVVFSVIGKRSLPSCLGGGDLDGDLYSLITDPQMIPFQKDICSPGSYSPIQPILLPQP 957

Query: 903  VDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGK 962
                D IEFF  ++ ++ +G I   H+  AD    G L  +C+ LAEL + AVD+PKTG 
Sbjct: 958  CTILDGIEFFLDYISSDLVGIIATRHLQIADQQTLGTLHPDCLKLAELHSKAVDYPKTGV 1017

Query: 963  IVTMPAHLKPKL---YPDFM-----------GKEAYQSYKSNKILGRLYR 998
             V++     PK+    PDFM           G E Y  Y+S+K+LGRL+R
Sbjct: 1018 PVSI--QDLPKVESAKPDFMCPEYMLNVHKKGNERY--YESDKVLGRLFR 1063


>gi|392571578|gb|EIW64750.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
          Length = 1224

 Score =  237 bits (604), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 194/638 (30%), Positives = 306/638 (47%), Gaps = 92/638 (14%)

Query: 415  RLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVR 474
            R+ ITPT      P  E SNRV+RKY    D FLRV F DE    +  +          R
Sbjct: 423  RVTITPTTMILEGPFPERSNRVMRKYYRSQDSFLRVCFQDENRLQLRFD----------R 472

Query: 475  DITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS------EDG 528
            +I    F     V +RV+S+L GG    G +F FLA+S S L++ + WF        + G
Sbjct: 473  EIDGTDF-----VNRRVKSVLLGGLAFPGARFDFLAYSQSALKEHAVWFVKPFRHTDDQG 527

Query: 529  KTSVLDIKKWMGRF-TDKNI----------AKCAARMGQCFSSTYATVEVPPTEV----D 573
             T  +D    +G   T +N+          A+ AAR+ Q F++T A++ +   ++    D
Sbjct: 528  YTHFVDAAAIIGSLGTFRNLTFDPELIYCPARYAARISQAFTATDASITIDAGQIIFGSD 587

Query: 574  PELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPP------PCAYQIRYAGCKGVV 627
             +    KR    F+DG+G I+P LA ++ + L+ +          P AYQIR+ G KG++
Sbjct: 588  IKDASGKRE---FTDGVGTISPQLAKDIWRALQENRRRGRRDRTYPRAYQIRFQGSKGML 644

Query: 628  AC-WPAKGDGIRMSLRESMNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDE 684
            +  +   G  I   +R SM KF+S  +  +E+  ++ +  P +LNR +I LL  L VP E
Sbjct: 645  SVDYTLPGRSI--LIRPSMIKFESPDSRNIEVARAFEKPAPYYLNRPLIMLLEGLGVPYE 702

Query: 685  MFWSMQDSMLSKLNQMLVDSDVAFEVLTA-ACAEQGNTAAIMLSA---GFNP-QTEPHLR 739
            +F  +QD+ +  +   +   + +  +L            ++ML     G  P   E   R
Sbjct: 703  VFQRLQDNAVRDVKAAVESLERSARLLEGHGLGGSFRLTSVMLGLHKLGLGPLNNEVFWR 762

Query: 740  GMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHG 799
              +       L  L+ +ARI VP G  L+G  D  G LE G+ F+ +  P  G       
Sbjct: 763  QTMDFAINHVLRELKHRARIPVPEGWTLVGVADVHGYLEEGEIFVCIDAPDRGG------ 816

Query: 800  SRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE------LHHLYDCLVFPQKGD 853
                    L+ ++G  +I+++P +HPGD +++ A+  P       +  L + +VF  KG 
Sbjct: 817  --------LRYLEGRTLISRSPTIHPGDAQVVHAIGRPRPGSPFSMESLRNTVVFSIKGK 868

Query: 854  RPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFA 913
            RP  +   G DLDGD Y VT    L+PP  +++   EY A   K +       D+ EF A
Sbjct: 869  RPLPSCLGGGDLDGDEYNVTSMPELLPP--RTFYAAEYKATPRKLVDHESTMVDVAEFVA 926

Query: 914  KHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPK 973
            +++ ++ LG I    ++ AD S  G LD +C+ LA L + AVD+PK+G+ V  P    P+
Sbjct: 927  EYINSDTLGIIAITWLIIADQSTEGILDPDCLKLAALHSDAVDYPKSGQPV--PIQHIPR 984

Query: 974  LY---------PDFMG----KEAYQSYKSNKILGRLYR 998
            L          P+ M      E+ + Y+S + +G+LYR
Sbjct: 985  LQFARKPDWNAPETMSIDTLSESPRFYESVRAIGKLYR 1022


>gi|308469043|ref|XP_003096761.1| hypothetical protein CRE_23681 [Caenorhabditis remanei]
 gi|308241452|gb|EFO85404.1| hypothetical protein CRE_23681 [Caenorhabditis remanei]
          Length = 1721

 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 232/877 (26%), Positives = 389/877 (44%), Gaps = 170/877 (19%)

Query: 412  EVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAP 471
            +VR++++TPT+   L PE  ++NR +        R +R TF D+  Q M  N L      
Sbjct: 479  KVRKVILTPTRIIFLAPETIMANRAINGADHDGTRIIRATFRDDNFQKMRYNQLR----D 534

Query: 472  IVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTS 531
            ++ + TLN               L  GF + GR FS+LA S+SQ+RD  A+F     KT 
Sbjct: 535  LLEERTLNH--------------LRDGFVIYGRGFSYLASSNSQMRDGGAYFMERWNKTQ 580

Query: 532  ---------------------VLDIKKWMGRFTDK-NIAKCAARMGQCFSSTYAT--VEV 567
                                 ++D +K +G+F+   +I K  AR+GQCF+       VE+
Sbjct: 581  LAEYKERYPRIRFPDPSFKPKIIDYRKKLGKFSKTGSIPKAMARLGQCFTQARRCDGVEI 640

Query: 568  PPTEVDPELPDIKRNG-YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGV 626
               +    +  +   G Y F+DG+G I+  LA ++ Q + +     P AYQIR+ G KG+
Sbjct: 641  CLQDYTMIVDAVGGAGQYKFTDGVGCISARLAAKICQSISIKC--LPSAYQIRFRGLKGM 698

Query: 627  VACWPA-------------KGDGIRMSL--------------RESMNKFQSHHTT----- 654
            +A  P+             KG  I+ S+              R S  KF S         
Sbjct: 699  LAIEPSIDEIADYFLNIYRKGFMIKESIESADLEPYTFKCLFRGSQLKFHSSRGKVEEWP 758

Query: 655  LEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFE---VL 711
            +E+  W+   P  LN+  I +L  ++    +       + +++ ++L    V +    V 
Sbjct: 759  IEMVKWSSPTPVTLNKPFINILDQVSAMQSL--KCHKRVTARIEELLSMEMVNYSKWIVN 816

Query: 712  TAAC-------AEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA- 763
               C         + + A +    GF    EP  R ++     + +  L  K +I +P+ 
Sbjct: 817  EEQCRNRLEGMPRRVHFATLERKYGFVLSAEPFFRSIVKAAIDSSMSRLLRKLQIPIPSH 876

Query: 764  -GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSR-FAETKKLQVIKGFVVIAKNP 821
             GR + G +DE G L+ GQ F++ +E    N  +K   + F  T     + G V++ K P
Sbjct: 877  LGRSVFGVVDETGQLQYGQVFVRYTE----NVDNKSPLKDFGTT-----LTGKVLVTKFP 927

Query: 822  CLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
             L  GD+R+ EAVD PEL+HL D +VFPQ G R   +E +GSDLDGD Y V WD  L   
Sbjct: 928  SLCEGDVRMYEAVDIPELYHLKDVIVFPQTGPRSQPDEMAGSDLDGDEYAVIWDAELF-- 985

Query: 882  SKKSWPPMEYNAAEAKT-LTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGAL 940
             +++ P   Y++ + +   T       +  F+A++M  E++G     H+  +D  ++G  
Sbjct: 986  FERNEPAFAYSSEKPEVPFTSSEMDHKMNLFYAEYMKQEDVGVTSTNHLHQSD--QFGIN 1043

Query: 941  DENCILLAELAATAVDFPKTGKIVTMPA--------HL--------KPKLYPDFMGK--E 982
             + C  +A   A A+D+ K+G  V  P         H+        + +  PDF      
Sbjct: 1044 SDVCNAIAVKNAMALDYSKSG--VAPPPLTSEWTFNHVTGINEPPERSERRPDFAANRYN 1101

Query: 983  AYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQ 1042
               SY+S+++LG+L+R+ +     D+  SS     P++I  D  L       +   A  Q
Sbjct: 1102 GNVSYQSSRLLGQLHRELRCV--NDVLASSSAKQVPIEI--DPLLVWKRWEKYAEVARVQ 1157

Query: 1043 KCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGE----------LKERLKHSY 1092
               Y+GQL  +++ + +N E E+ +G    +   +S ++ +          ++ ++   Y
Sbjct: 1158 MIRYNGQLRSIMDTFGINTEAEIFSGCYREIRNRHSEREQDDMSLYNTETIIETQMTEIY 1217

Query: 1093 SALRKEFRQVFEKMDS--------DCELLSEDEKNAL----------FERKASAWYQVTY 1134
               R++F   F + ++        +   +S+DEK+ L             KA A+Y+V Y
Sbjct: 1218 RKYREQFFAEFLEGENAYMRLTEVENSRMSDDEKDVLRRVCREPNNKMMAKAVAYYRVCY 1277

Query: 1135 HPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK 1171
                 +K+ D +          LSFAWIA D L  ++
Sbjct: 1278 AA--AQKTGDQK----------LSFAWIAYDILNTVR 1302


>gi|66813222|ref|XP_640790.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
 gi|60468778|gb|EAL66778.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
          Length = 2285

 Score =  236 bits (602), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 211/763 (27%), Positives = 343/763 (44%), Gaps = 114/763 (14%)

Query: 399  ELYKG-PKQIDDI-VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEG 456
            ELYK  P Q ++  V +  + +TP++    PP + L NR+LRK+    ++F+   F DE 
Sbjct: 1058 ELYKDKPIQSNNGWVLINEIFVTPSRIVLKPPRLTLGNRILRKFS--PEKFILFNFTDEN 1115

Query: 457  LQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQL 516
            L+       S   +P+ + I         R+F     I+ G     G+K+ F+  S SQ+
Sbjct: 1116 LEPFRGLNKS---SPLTKTIE--------RIFNNGIEIIQGS----GKKYFFIGCSQSQV 1160

Query: 517  RDCSAWFFSEDGKTSVLDIKKWMG-RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPE 575
            R+ SAWF  ED  T+      W G ++    + K    +   FS+T  +  +   E+ P+
Sbjct: 1161 RNYSAWFVLEDKVTNEKSALNWSGIKYESLQMIKVFRNLCLLFSTTLKSQVIYKIEMIPD 1220

Query: 576  LPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGD 635
            +  I + G+ F++G G I   L   + Q+   + N   CAYQIR  G KGV+       D
Sbjct: 1221 I--ISKEGHNFTEGCGFIGSKLVELINQQN--NYNSSTCAYQIRLGGSKGVLV-LNENID 1275

Query: 636  GIRMSLRESMNKFQ---------SHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMF 686
             + + +R SM+KF+           H TLEI S +      LNRQ ITLLS   V D  F
Sbjct: 1276 EMSLQIRPSMSKFELDYKSGQLDEEHKTLEIVSASTTSRCKLNRQAITLLSNAGVEDSTF 1335

Query: 687  WSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIR 746
              M +  L++  Q LVD +++ E+L            I     FN   + ++R +L  + 
Sbjct: 1336 LQMLEVELNQNAQTLVDVNLSKELLGDFFQH------ITEYELFN---DYYIRSILLKLY 1386

Query: 747  AAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETK 806
             ++L  +++K  I V   R L+G  D  G L     +I+V E                  
Sbjct: 1387 KSKLIKIQDKCWIEVKESRNLLGVCDTSGTLPEDTVYIEVEEL----------DPIDNLM 1436

Query: 807  KLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLD 866
            K +VI G V + KNPC HPGD+R L+A+DHP L+   + L F   G  P+  + SGSDLD
Sbjct: 1437 KPKVIIGRVAVLKNPCHHPGDVRFLKAIDHPPLNGKRNVLFFSTNGMVPNFKQCSGSDLD 1496

Query: 867  GDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRD------------------- 907
            GD YFV +D+ LI     +  P      E +T+   + + D                   
Sbjct: 1497 GDRYFVIYDQTLIREDLITHEPY---LGEEQTVNPLIGEEDSDDDQYENDDNDITIPTST 1553

Query: 908  -----------IIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVD 956
                       + + + K++    LGTI N H+  +D  +  ++  N I +A   A  VD
Sbjct: 1554 TTKSTNNTPTKLSDIYLKNVDKSKLGTISNTHLAISDIEKVSSI--NSIKVAIQCAIEVD 1611

Query: 957  FPKTGKIVTMP----AHLKPKLYPDFM-----------GKEAYQSYKSNKILGRLYRQSK 1001
              KT     +P    + LK K YP FM           G    + Y S++++G++Y  ++
Sbjct: 1612 SVKTSVHGIIPRDVKSILKEKGYPHFMKIKNGSTFEYKGGNQRKYYISDRVIGKIYDSAE 1671

Query: 1002 D-AYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVN 1060
            +  +  D    ++VD + +   Y   L          + +     Y  ++N +L ++   
Sbjct: 1672 NLLWFGDFLPEAKVDESLLVQGYKEYLN--------HENFTTYMDYKSKINSILRRFGAQ 1723

Query: 1061 REEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVF 1103
             EE+L+ G  +  P+++ +   E K   K +Y++++K F   F
Sbjct: 1724 SEEDLLIG--FMDPQFSEKLSIEAKAHFKSNYNSIQKLFYHNF 1764


>gi|341877528|gb|EGT33463.1| hypothetical protein CAEBREN_18731 [Caenorhabditis brenneri]
          Length = 1708

 Score =  234 bits (597), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 246/962 (25%), Positives = 409/962 (42%), Gaps = 190/962 (19%)

Query: 336  VNAVMHKGIINQHQLSDSFF-DLLRGQSREVNVAALKHIYSYKWPVFDACK-RLKLVQEW 393
            VN  ++  +  +H L +S   DLL     +  V  L  ++         C+ R K  Q  
Sbjct: 381  VNDDINNDVFQRHCLCESALEDLLNHVDNQPRVGDLLDVFE------RLCEARKKSKQSN 434

Query: 394  LLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFM 453
             L D +  +G ++       R+ ++T T+   L PE+ +SNR +        R +R T  
Sbjct: 435  QLTDEQWKEGFRK------TRKALLTTTRKIYLAPEMIMSNRAVTGVDHDGTRIIRTTIR 488

Query: 454  DEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSS 513
            D+  Q M    L   ++               +V +R    L  GF + GR FS+LA S+
Sbjct: 489  DDNFQKMRQYQLGDLLS--------------EKVMRR----LKKGFVIMGRSFSYLASSN 530

Query: 514  SQLRDCSAWFFSEDGKTS--------------------VLDIKKWMGRFTDK-NIAKCAA 552
            SQ+R+   +      K                      +L  +K +G+F    +I+K  A
Sbjct: 531  SQMREGGTYHMERFNKKQLDLDYPGIHLRKIPSGYKPKILAYRKKLGKFEKTGSISKAMA 590

Query: 553  RMGQCFSSTYATVEVPPTEVDPEL-PDI----KRNG--YVFSDGIGKITPDLAMEVAQKL 605
            R+GQCF+   A + +     D ++ PD       NG  Y+++DG+G I+  LA ++A+ +
Sbjct: 591  RLGQCFTQARACIGIEIGNQDYQMVPDAIGGKNANGAPYMYTDGVGMISARLAQKIAKSM 650

Query: 606  KLDVNPPPCAYQIRYAGCKGVVACWPA---KGD-------------------------GI 637
            KL     P AYQIR+ G KG++   P+   K D                           
Sbjct: 651  KLPNGFVPSAYQIRFRGLKGMLVVDPSLDNKADYFKDIYRRGLMRKETNSEEIDLAPYTF 710

Query: 638  RMSLRESMNKFQSHHTT-----LEICSWTRFQPGFLNRQIITLLSTLNVPDEM------- 685
            +   RES  KF S         +E+  W+   P  LNR  I +L  ++    +       
Sbjct: 711  KCLFRESQMKFHSSKGGKDKWPIELVKWSSPTPVTLNRPFINILDQVSALQSLDCHKRIC 770

Query: 686  --FWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLT 743
                 + D  +      +++ D     L      + +  ++    GF+  TEP  R ++ 
Sbjct: 771  GRIEELLDIEMDSFTDCIINEDKCRSKL-EGMPRRVHFPSLWRRNGFSLCTEPFFRALIK 829

Query: 744  CIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSR 801
                  +  L +K  I +P+  GR + G  DE G+L+ GQ F+Q +E    N  +KH S 
Sbjct: 830  AAIDFSMMRLLKKVNIPIPSNVGRSMFGVTDETGLLQYGQVFVQYTE----NVNNKHPSG 885

Query: 802  FAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEAS 861
             +     +++KG +++ K P +  GD+R+ EAVD PEL HL + +VFPQ G R   +E +
Sbjct: 886  VSG----KILKGPLMVTKFPSMCEGDVRMYEAVDIPELRHLENVIVFPQNGPRSMPDEMA 941

Query: 862  GSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENL 921
            GSDLDGD Y V WD  L     ++      +  E K     +D+  +  F+A+ M  E++
Sbjct: 942  GSDLDGDEYAVIWDPFLFFERNETAFAYCNDKPEKKLNIDEMDE-GMNVFYAEFMNQEDV 1000

Query: 922  GTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHL----------- 970
            G     H+  +D  +YG   + C +LAE  A  +D+ K+G     P+ L           
Sbjct: 1001 GITATNHLHQSD--QYGINSKVCNILAEKNAMLLDYSKSG---VAPSPLTFNWDKHPETK 1055

Query: 971  ------KPKLYPDFMGKE--AYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPV--D 1020
                  K +  PDF        Q+Y+S+++LG L+R+ +   D  ++ S+E  +  V  D
Sbjct: 1056 KWVPPEKSERKPDFANNRFSMNQTYQSSRLLGTLHRELRSVNDV-VATSAEKQVPLVLDD 1114

Query: 1021 IHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRK 1080
            +   T  E  +SV     A  Q   Y+G L  ++E + VN E E+ +G+   +    S K
Sbjct: 1115 LLVWTGWEQYKSV-----AEAQLLRYNGSLRSIMETFGVNTEAEVFSGYYREIRNRQSDK 1169

Query: 1081 QGE----------LKERLKHSYSALRKEFRQVFEKMDSDCE-----LLSEDEK------- 1118
            + +          ++ ++   Y   R EF + F +   D        + E+E+       
Sbjct: 1170 EQDDMSQYCTENVIETQVTALYRKFRAEFFEEFAEHTPDSPAYMRLTVPENERVWEEKDV 1229

Query: 1119 ---------NALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLAR 1169
                     NA+   KA A+Y+  Y          +++ D       LSFAW+A D L  
Sbjct: 1230 LRRVCRKPSNAMMA-KAVAYYRTCYQNA-------VEKGDRK-----LSFAWLAYDILNT 1276

Query: 1170 IK 1171
            ++
Sbjct: 1277 VR 1278


>gi|240282192|gb|EER45695.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H143]
          Length = 396

 Score =  233 bits (595), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 22/383 (5%)

Query: 485 TRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD 544
           + V+ RV  IL  G  +  R + FLAF +SQ R+  A+FF+     +  +I+  MG   +
Sbjct: 2   SEVYARVTRILQHGIIIGDRHYEFLAFGNSQFREHGAFFFASLPHLTAANIRAQMGDLNN 61

Query: 545 -KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQ 603
            K +AK AAR+GQCFS+T A    P      E+ DI+RNGYVFSDG+G+++  L   +  
Sbjct: 62  IKVVAKYAARLGQCFSTTRAVTSCPVQL--KEVDDIERNGYVFSDGVGRLSHFLTQMIRS 119

Query: 604 KLKLDV--NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWT 661
            L ++     PP A+Q R  GCKG++A   +   G  + +R+S  KF + H  LEI   +
Sbjct: 120 DLGINTPSGQPPSAFQFRLGGCKGILAV-SSDAHGQEVHIRKSQYKFAAAHHGLEIIRHS 178

Query: 662 RFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNT 721
            F    LNRQ+I +LS L VPD++F +    M+ KL Q + + + A  +L         T
Sbjct: 179 HFSLATLNRQLILVLSCLGVPDKVFIAKLRMMMDKLEQAMTNEEQAVHLLQTHVDPNQMT 238

Query: 722 AAI--MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG 779
             +  M+  GF    EP +  +L   R  Q+  L+EKA+I +  G +L+GC+DE   L+G
Sbjct: 239 LILADMVRDGFQGSKEPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDETKTLKG 298

Query: 780 GQCFIQVSEPFLGNCFSKHGS----------RFAETKKLQVIKGFVVIAKNPCLHPGDIR 829
              + + S P     + +  +          R +E K + +I+G  ++A+NP LHPGDIR
Sbjct: 299 ---YFRSSRPGQDATYEESVACLPEIFVQVWRHSEGKYV-IIEGVCILARNPSLHPGDIR 354

Query: 830 ILEAVDHPELHHLYDCLVFPQKG 852
           +++AV+ P LHHL D +V PQ G
Sbjct: 355 VVKAVNAPSLHHLRDVVVLPQLG 377


>gi|343428005|emb|CBQ71530.1| related to RNA-dependent RNA polymerase [Sporisorium reilianum SRZ2]
          Length = 1505

 Score =  233 bits (594), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 195/644 (30%), Positives = 301/644 (46%), Gaps = 87/644 (13%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
             +V  + ITPT+     P ++ SNRVLR + +    FLRV F DE               
Sbjct: 464  AQVFHVTITPTRTLLEGPFMDASNRVLRLFPEFGSHFLRVAFCDEDGDRF---------- 513

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS----E 526
            P+ R    +    ++ V +R+ + L  G  + GR+F  LA+S S L     WF +    +
Sbjct: 514  PVSRHDFADDIDSESFVRERIGTPLKEGIDIAGRRFEALAWSGSGLGSHHCWFVTAFTDK 573

Query: 527  DGKT-SVLDIKKWMGRFT--DKNIAKCAARMGQCFSSTYATVEVPPTEVD--------PE 575
            DGK  +   I+  +G F+  +   A+  AR+ Q FS+T +T+ +    +           
Sbjct: 574  DGKWWNAERIRASLGNFSRVENQPARFGARLSQAFSATSSTIRISDDWIQIVEDDFSHAL 633

Query: 576  LPDIKRNG------YVFSDGIGKITPDLAMEVAQKL-------------KLDVNPPPCAY 616
            +P    NG      Y+ +DG+G+I+  L  E+ ++L             + D    P A 
Sbjct: 634  MPSSNGNGRSSKQRYLLTDGVGEISRALLNEIWRELCAVKNMRREWTLCEQDAARIPSAI 693

Query: 617  QIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQS-HHTTLEICSWTRFQ--PGFLNRQII 673
            Q R  G KGV+ C   +  G  M +R SM KF +  H  LE+ + T F   P  LNR +I
Sbjct: 694  QFRLGGAKGVL-CLNPQLKGKVMKVRHSMIKFSAPEHRDLEVAT-TSFSALPARLNRPLI 751

Query: 674  TLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL-TAACAEQGNTAAIMLS----A 728
              L  L VP  +F ++QD  +            A +++ T A ++      +        
Sbjct: 752  NALEDLGVPAHVFLTLQDKAVESAQSARKCFRRASQLMGTFALSDTAEMHRLFRRLDSIV 811

Query: 729  GFNPQTEPH---LRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQ 785
            G  P   P    L  + T + AA L  L+ KARI V  G  L+G +DE G L+ G+ F Q
Sbjct: 812  GIQPDQLPADGILNRLCTIVIAAALGDLKRKARIPVD-GCTLIGVVDEFGFLQKGEIFAQ 870

Query: 786  VSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLY-- 843
            V        + K GS          ++G V++ ++P +HPGD+R++ AV  P  H L+  
Sbjct: 871  VD-------YGKDGS-------FTAVEGRVMVGRSPTIHPGDVRVVNAVVPPRGHPLWQL 916

Query: 844  -DCLVFPQ-KGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR 901
             + LVF +    RP  +  SG DLDGD+Y +  D  L P  K+   P +Y     ++L  
Sbjct: 917  RNVLVFNKCPTGRPLQSILSGGDLDGDIYTIYRDPQLFP--KRIESPGQYKTVAPRSLAA 974

Query: 902  PVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
            P    D+ +FF  +++N+ +G + + H+  AD S   +LD +CI LA+L A AVD+ KTG
Sbjct: 975  PCTFADLADFFVDYVINDQVGLVSHFHLQIADKSHLHSLDPDCIRLAQLHAKAVDYRKTG 1034

Query: 962  KI-----VTMPAHLKPKLYPDFMGKEAYQS--YKSNKILGRLYR 998
            +      V MP     +  PDF+ +       Y S + LG+LYR
Sbjct: 1035 QAVHRRDVPMPPFGAER--PDFLVQRPAGPGIYPSTRALGQLYR 1076


>gi|426201566|gb|EKV51489.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
          Length = 1198

 Score =  232 bits (592), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 196/641 (30%), Positives = 302/641 (47%), Gaps = 95/641 (14%)

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDL-ADRFLRVTFMDEGLQTMNANVLSYFIAPIVR 474
            ++ITPT      P  E SNRVLR+Y     + FLRVTF D+          +Y      R
Sbjct: 396  VIITPTTMSLQGPYPEQSNRVLRRYDSKNHESFLRVTFRDD----------NYLQLRFDR 445

Query: 475  DITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE-------- 526
            D+   SF     +  RV   L  G  + GR F+FLA+S S L++ S WF  +        
Sbjct: 446  DVDGPSF-----IRDRVGRFLKQGLSIAGRTFTFLAYSQSALKEHSVWFVKKFHNAPYGD 500

Query: 527  -DGKTSVLDIKKWMGRFTDKNIAKC----AARMGQCFSSTYATVEVPPTEVDPELPDIKR 581
             D KT +  +  +     D  +  C    AAR+ Q F++T A V V   EV   L DIK 
Sbjct: 501  VDAKTIIDSLGTFDNLSYDPTLKLCPARYAARISQAFTATDAAV-VSVEEV-LNLDDIKT 558

Query: 582  NG--YVFSDGIGKITPDLAMEVAQKLKLDVNPP------PCAYQIRYAGCKGVVACWPAK 633
            +   YVF+DG+G ++ DLA  +  KL+            P AYQ+R+ G KG+++     
Sbjct: 559  SDGKYVFTDGVGTMSQDLARAIWGKLRSAKRKSGRSSDYPHAYQVRFLGSKGMLSIDHTL 618

Query: 634  GDGIRMSLRESMNKFQ----SHHTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWS 688
                 ++LR SM KF+    S    +EI  ++ R    +LNR +ITLL  L +P  +F  
Sbjct: 619  NGAHTIALRPSMTKFEAESGSGEQEIEIARAFDRPTAYYLNRPLITLLEGLGIPTNVFLK 678

Query: 689  MQ-DSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSA---GFNPQTEPHLRGMLTC 744
             Q D++    +  L  S  A  + T          A M S    G     +    G L  
Sbjct: 679  FQNDAVQETRSATLTLSKAARLLETHGLGASFRLPATMTSLAKLGLGSIHDDPFYGKLLQ 738

Query: 745  IRAAQ-LWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFA 803
            I     L  L+  ARI +P    L+G  D    LE G+ F  V          KH     
Sbjct: 739  IAVHHVLRDLKHHARIPIPDAWTLVGVADVHSYLEEGEVFACV----------KH----- 783

Query: 804  ETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP------ELHHLYDCLVFPQKGDRPHT 857
            +T+ +  ++G ++I+++P +HPGD++I++A+  P          L++ +VF  KG RP  
Sbjct: 784  QTRGIIFLEGLLLISRSPTIHPGDVQIVKAIGVPPEGSCFAREPLHNTVVFSVKGRRPLP 843

Query: 858  NEASGSDLDGDLYFVTWDENLIP--------PSKKSWPPMEYNAAEAKTLTRPVDQRDII 909
            +   G DLDGD+Y      N++P        P + ++ P EY   + K L +P    D+ 
Sbjct: 844  SCLGGGDLDGDIY------NVLPLKEHPDFMPKRATYEPAEYAPTQRKLLDQPSTMDDVA 897

Query: 910  EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAH 969
            +F  ++++++ +G I    ++ AD S  G  DE+C+ LA+L + AVD+PK+G+ V     
Sbjct: 898  DFVMEYIISDVVGIIAINWLIIADQSPAGIEDEDCLRLAQLHSDAVDYPKSGRAVN--PE 955

Query: 970  LKPKL---------YPDFMGKEAYQSYKSNKILGRLYRQSK 1001
            L PKL          P+ +  ++   Y+S K +G L+R+ K
Sbjct: 956  LIPKLKFPMKPDWNAPETINPDSANYYQSRKAVGVLFREVK 996


>gi|393247829|gb|EJD55336.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
          Length = 1217

 Score =  232 bits (592), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 200/643 (31%), Positives = 309/643 (48%), Gaps = 95/643 (14%)

Query: 408  DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSY 467
            D  ++V++++ITPT+     PE E SNRVLR+Y +  D FLRVTF D    + + +    
Sbjct: 419  DSPLQVQKIIITPTRVKLSGPEPEQSNRVLRRYAENIDAFLRVTFADNDEYSYHYD---- 474

Query: 468  FIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE- 526
                  R++ + +F +       V   L  G  + GRKF FLA+SSS L++ S WF +  
Sbjct: 475  ------REVDIPTFVKSA-----VGIPLKNGITIAGRKFEFLAYSSSALKEHSVWFVTPF 523

Query: 527  -DGKTSVLD----IKKWMGRFTDKN--IAKCAARMGQCFSSTYATVEVPPTEVDP--ELP 577
             + KT        I+  +G F  +    A+  ARM Q FS+T  +VEV   E+ P  ++P
Sbjct: 524  VEEKTGTYHTAKTIRDSLGDFEKEKYCAARLGARMAQAFSATDPSVEV--EEILPLDDIP 581

Query: 578  DIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVN--------PPPCAYQIRYAGCKGVVAC 629
                     SDG+G ++ D + +V + L+   N        P P A+QIRY G KG+++ 
Sbjct: 582  KASSGPQCMSDGVGTMSRDFSEQVWEALESRRNKGRRGKNRPAPSAFQIRYKGAKGMLSV 641

Query: 630  WPAKGDGIRMSLRESMNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFW 687
               K  G  + LR SM KF+  ++  LEI  ++      +LNR +I LL  L V  ++F 
Sbjct: 642  -DYKLKGSVICLRPSMIKFEDLNSRELEIARAFNTPARMYLNRPLIVLLEGLGVKPDVFM 700

Query: 688  SMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPH-LRGMLTCIR 746
            ++Q + L  +++     D A  +L +     G  AA  L + F   T  H LR   + I 
Sbjct: 701  NLQQAALEDIHKAAGSLDTAARMLES----HGLGAAFRLPSLF---TSLHKLRDKHSAI- 752

Query: 747  AAQLWG-------------------LREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVS 787
             ++L                     L+ KARI VP    L+G +D    L+ G+ F  V 
Sbjct: 753  -SELLAEDDFFRRVLDFAINHIRRELKYKARIPVPDSWTLVGVVDVHDYLKEGEIFAAVK 811

Query: 788  EPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE-----LH-H 841
                            + KK   ++G ++I ++P +HPGD++++ A+  P      +H  
Sbjct: 812  P--------------RDAKKPFYLQGPMLITRSPVIHPGDVQVVRAIGRPPPGSPFVHEE 857

Query: 842  LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR 901
            L +C+VF  KG R   +   G D DGD+Y +     L P  K   PP EY   + K L R
Sbjct: 858  LPNCVVFSIKGKRSLASCLGGGDYDGDIYNICPLTELHP--KSCHPPAEYAPGQRKILDR 915

Query: 902  PVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
            P    DI +F  +++ ++ LG I    ++ AD SE G    +C  LA+L + AVD+PKTG
Sbjct: 916  PCGIEDIADFVTEYINSDLLGHISVNWLLIADASERGIFHPDCFKLAQLHSDAVDYPKTG 975

Query: 962  KIVTMPAHLKPK--LYPDFMGKEAYQ----SYKSNKILGRLYR 998
              V      +PK  + PD+   E  +     Y S + LG+L+R
Sbjct: 976  MPVPHKDIPQPKQGVRPDWQASELKEHDKDHYVSQRALGQLFR 1018


>gi|409083384|gb|EKM83741.1| hypothetical protein AGABI1DRAFT_66661 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1198

 Score =  232 bits (591), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 198/640 (30%), Positives = 303/640 (47%), Gaps = 93/640 (14%)

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDL-ADRFLRVTFMDEGLQTMNANVLSYFIAPIVR 474
            ++ITPT      P  E SNRVLR+Y     + FLRVTF D+          +Y      R
Sbjct: 396  VIITPTTMSLQGPYPEQSNRVLRRYDSKNHESFLRVTFRDD----------NYLQLRFDR 445

Query: 475  DITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE-------- 526
            D+   SF     +  RV   L  G  + GR F+FLA+S S L++ S WF  +        
Sbjct: 446  DVDGPSF-----IRDRVGRFLKQGLSIAGRTFTFLAYSQSALKEHSVWFVKKFHNAPYGD 500

Query: 527  -DGKTSVLDIKKWMGRFTDKNIAKC----AARMGQCFSSTYATVEVPPTEVDPELPDIKR 581
             D KT +  +  +     D  +  C    AAR+ Q F++T A V V   EV   L DIK 
Sbjct: 501  VDAKTIIDSLGTFDNLSYDPTLKLCPARYAARISQAFTATDAAV-VSVEEV-LNLDDIKT 558

Query: 582  NG--YVFSDGIGKITPDLAMEVAQKLKLDVNPP------PCAYQIRYAGCKGVVACWPAK 633
            +   YVF+DG+G ++ DLA  +  KL+            P AYQ+R+ G KG+++     
Sbjct: 559  SDGKYVFTDGVGTMSQDLARAIWGKLRSAKRKSGRSSDYPHAYQVRFLGSKGMLSIDHTL 618

Query: 634  GDGIRMSLRESMNKFQ----SHHTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWS 688
                 ++LR SM KF+    S    +EI  ++ R    +LNR +ITLL  L +P  +F  
Sbjct: 619  NGAHTIALRPSMTKFEAESGSGEQEIEIARAFDRPTAYYLNRPLITLLEGLGIPTNVFLK 678

Query: 689  MQ-DSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSA---GFNPQTEPHLRGMLTC 744
             Q D++    +  L  S  A  + T          A M S    G     +    G L  
Sbjct: 679  FQNDAVQETRSATLTLSKAARLLETHGLGASFRLPATMTSLAKLGLGSIHDDPFYGKLLQ 738

Query: 745  IRAAQ-LWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFA 803
            I     L  L+  ARI VP    L+G  D    LE G+ F  V          KH     
Sbjct: 739  IAVHHVLRDLKHHARIPVPDAWTLVGVADVHSYLEEGEVFACV----------KH----- 783

Query: 804  ETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP------ELHHLYDCLVFPQKGDRPHT 857
            +T+ +  ++G ++I+++P +HPGD++I++A+  P          L++ +VF  KG RP  
Sbjct: 784  QTRGIIFLEGLLLISRSPTIHPGDVQIVKAIGVPPEGSCFAREPLHNTVVFSVKGRRPLP 843

Query: 858  NEASGSDLDGDLYFVTWDENLIP--------PSKKSWPPMEYNAAEAKTLTRPVDQRDII 909
            +   G DLDGD+Y      N++P        P + ++ P EY   + K L +P    D+ 
Sbjct: 844  SCLGGGDLDGDIY------NVLPLKEHPDFMPRRATYKPAEYAPTQRKLLDQPSTMDDVA 897

Query: 910  EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIV---TM 966
            +F  ++++++ +G I    ++ AD S  G  DE+C+ LA+L + AVD+PK+G+ V   ++
Sbjct: 898  DFVMEYIISDVVGIIAINWLIIADQSPAGIEDEDCLRLAQLHSDAVDYPKSGRAVNPESI 957

Query: 967  PAHLKPKLYPDFMGKEAYQS-----YKSNKILGRLYRQSK 1001
            P  LK  + PD+   E         Y+S K +G L+R+ K
Sbjct: 958  PK-LKFPMKPDWNAPETINPDSANYYQSRKAVGVLFREVK 996


>gi|330798142|ref|XP_003287114.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
 gi|325082892|gb|EGC36360.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
          Length = 2341

 Score =  231 bits (588), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 211/773 (27%), Positives = 353/773 (45%), Gaps = 95/773 (12%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            V+ + +TP++     P++E +NR LR++   ++ F+ +   +E L+              
Sbjct: 1182 VKEVFVTPSRIIFKEPKLERTNRALRRFG--SENFILLKVANESLEP------------- 1226

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
                 L   + K  ++  ++     G  L G K+ ++  S+SQ  D SAWF ++     V
Sbjct: 1227 -----LRGLNPKHPLYTTIQKYFDSGIELSGTKYYYVGNSNSQHSDFSAWFVND--LAHV 1279

Query: 533  LDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPE-----LPDIKRNGYVFS 587
              I+ W     D+++     +  +  S  + T    P+ V P+     + DI  NG+ F+
Sbjct: 1280 FLIRNWS---QDQSLVMQPRKFARGLSLMFTTT--SPSFVIPQRNYYIIDDIISNGHNFT 1334

Query: 588  DGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKG-VVACWPAKGDG--IRMSLRES 644
            +G G I  DL+  + +          CAYQIR  G KG +V       DG  IR S  ++
Sbjct: 1335 EGCGFIGKDLSRRINELFHY--KSSTCAYQIRIGGAKGMLVVSETVDPDGVYIRKSQIKT 1392

Query: 645  MNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDS 704
                   H TLEICS +      LNRQ+I LLS   V D +F+S+QD  ++ L   L D 
Sbjct: 1393 KPAHYDEHRTLEICSISTSSNCKLNRQVIALLSCKGVKDHVFYSIQDRYMNYLASTLNDV 1452

Query: 705  DVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAG 764
            + + +VL     +  +    +L   F       +R +L       +   ++K+ + +   
Sbjct: 1453 EYSRKVLDEFFKDLNDNE--LLQDNF-------IRRILITHYKLSIERAQQKSHLDIEKS 1503

Query: 765  RWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLH 824
            R L+G  D   +L     FIQ+ +        + GSR         +KG VV+ KNPC H
Sbjct: 1504 RNLLGVTDPTRLLPADCIFIQIEQE------EEDGSRHYVP-----LKGDVVVTKNPCTH 1552

Query: 825  PGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKK 884
            PGD+RIL AV+   LHHL D +VF   G+ P+  E SGSDLDGD YFV +D +L+  +  
Sbjct: 1553 PGDLRILRAVNIEALHHLKDVIVFSTYGNVPNFKEISGSDLDGDRYFVCFDNDLM-INGN 1611

Query: 885  SWPPMEYN-AAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDEN 943
            S P +  N   E        D + ++  +  ++  + +GT+ NAH+  +D+  YGA   +
Sbjct: 1612 SIPYLGDNLTKEDPPQNVYNDPKLLVGQYLANVEKQKIGTLYNAHLAISDY--YGADSVH 1669

Query: 944  CILLAELAATAVDFPKTGKIVTMPAHLKPKL----YPDFMGKE---AYQSYKSNKILGRL 996
             I L+      +D  KTG    +P +++  L    YP +M ++     + Y+S K+ G +
Sbjct: 1670 AIELSIECFKEIDAVKTGVHGEVPRNIQFHLNHFGYPHYMRRDDNSPKKYYQSKKVQGLM 1729

Query: 997  YRQSKD-AYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLE 1055
            + Q +   Y  D     E+ +N  ++    +       D++  A      Y  ++N LL+
Sbjct: 1730 FDQLEQLVYIGDF--LPEISVNEKNLKDGYN-------DYLNSASILYQEYKNKINSLLQ 1780

Query: 1056 QYKVNREEELVTGHIWS--MPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELL 1113
            +Y    EE L+ G +       Y+   Q ++KE  +    + + EF + F     D +++
Sbjct: 1781 RYGGEDEESLLVGFMDQNFSSDYSKNIQDDIKENYRAIIDSFKVEFLKDFGSGIIDEQVI 1840

Query: 1114 SEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDY 1166
             ++E     E+K SAWY V+Y           + +D A     L F WIA  +
Sbjct: 1841 -KNEHYGEVEKKISAWYYVSYSD---------KNEDRA-----LGFYWIARQF 1878


>gi|388851646|emb|CCF54642.1| related to RNA-directed RNA polymerase [Ustilago hordei]
          Length = 1557

 Score =  231 bits (588), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 190/630 (30%), Positives = 297/630 (47%), Gaps = 66/630 (10%)

Query: 407  IDDIVE-VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVL 465
            +DD+   +  + +TPT+     P   +SNRV+R Y +    F RVTF +E         L
Sbjct: 413  VDDVYSPMLHIDVTPTRILLHGPHYHVSNRVIRSYPNHWHHFARVTFTNEDRD------L 466

Query: 466  SYFIAPIVRDITLNSFSQKTRVFK-RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF 524
            +  I P         F    R  + RV ++L  G  + GR +  LA+SSS +   + WF 
Sbjct: 467  ATSIRPNY------GFDDSERYIQSRVLNVLLHGLNVAGRHWDLLAWSSSSISTHTVWFV 520

Query: 525  SE--DGKTSVLD---IKKWMGRFTD--KNIAKCAARMGQCFSSTYATVEVPPTEVDPELP 577
            +   D     +D   I+  +G F+D  K+ A   AR+ Q FS+T  T+ VP + +  +  
Sbjct: 521  TPFVDNNGQRIDANVIRSRLGDFSDVIKSPALYGARLSQAFSATAHTISVPASHIHAKPD 580

Query: 578  DIKRNGYVFSDGIGKITPDLAMEV----------AQKLKLDVNPPPCAYQIRYAGCKGVV 627
             +   G  ++DG+G+I+P+L  EV           +K KL     P A Q+R  G KGV+
Sbjct: 581  KVSEQGMPYTDGVGQISPELMAEVWTSFLAAHGEGRKRKLLKAAAPSAIQMRLGGSKGVL 640

Query: 628  ACWPAKGDGIRMSLRESMNKFQSHHTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMF 686
            A  P +  G  + +R SM KF S H  LE+  + TR +P  LNR +I  L    VP   F
Sbjct: 641  AVNP-RLRGKVLIIRPSMTKFGSPHQDLEVANASTRARPAKLNRPLINALEDRGVPASAF 699

Query: 687  WSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQG-NTAAI---MLSAGFNPQT---EPHLR 739
              +QD  ++ + +   D   A  + +A     G N  ++   + S G   +T   +    
Sbjct: 700  MEIQDEAITLIGRARSDFQAAARLCSAFSFGTGCNLRSLFQKLHSLGLGGKTVHVDSFFL 759

Query: 740  GMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHG 799
             +   + AA L  ++ KARI    G  ++G  DE  +L+ G+ F QV     G       
Sbjct: 760  VIAKSVTAAALGDMKRKARIPT-RGVTMLGIADEFSLLKEGEVFAQVESVESGKV----- 813

Query: 800  SRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH---HLYDCLVFPQ-KGDRP 855
                 T+++ V  G  +I ++P + P D+ +++ V  P  H    L + +VF     D+P
Sbjct: 814  -----TRRILV--GRNLIGRSPTVDPADVAMVKCVKPPPGHPLLQLRNVIVFDTCSRDQP 866

Query: 856  HTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKH 915
                  G D DGDLY +  D+ L   +++S        A A+ L+R     ++  FF + 
Sbjct: 867  FPRRLGGGDCDGDLYTIYEDDRLFTKAQQSAMTFHPKIAPAE-LSRDCGSYELAFFFTQF 925

Query: 916  MVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIV---TMPAHLKP 972
            M+N+ +G + + H+  AD SE G+ D  C  LA L + A DF KTG  V    MP H +P
Sbjct: 926  MLNDFIGLVSSTHLRIADISELGSHDSRCKTLARLHSQATDFKKTGYAVDRSQMPRHREP 985

Query: 973  KLYPDFMG----KEAYQSYKSNKILGRLYR 998
             + PDF+     +E    Y S++ LG LYR
Sbjct: 986  -IIPDFLAQGEKREGKLVYSSSRALGYLYR 1014


>gi|281205109|gb|EFA79302.1| hypothetical protein PPL_07720 [Polysphondylium pallidum PN500]
          Length = 3481

 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 176/574 (30%), Positives = 277/574 (48%), Gaps = 69/574 (12%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            +++  +TP++     P +  +NR +R +    DRFL V   +E +    ++ + Y   P+
Sbjct: 1142 IKKAYVTPSRILFQRPLMVQTNRAIRLFG--PDRFLMVQITEETI----SDSIDY--QPL 1193

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF------SE 526
            +  + L+         K +  I   G+     ++ FL +S+SQLR  + WF+      S 
Sbjct: 1194 ISKLMLD---------KLIDGIAVAGY----GQYHFLGYSNSQLRKNTCWFYCPDAIDSL 1240

Query: 527  DGKTSVLDIKKWMGRFTDKNI----AKCAARMGQCFSSTYATVEVPPTEVDPELPDI--K 580
            D   S+ D+K+ +    D +I     +    +   F ST  ++ +P   +  E+PD+   
Sbjct: 1241 DDAPSLDDVKQIL--IGDTSIYTEPRQYLRSLSLVFPSTTPSLLIPAEHIH-EVPDVVSA 1297

Query: 581  RNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMS 640
              G +FSDGIG I   +A++V +   L      CA+QIR AG KGVV   P   DGI   
Sbjct: 1298 NTGQIFSDGIGYIGKRVALQVIEFASLP--EETCAFQIRIAGYKGVVTIHPTIDDGIY-- 1353

Query: 641  LRESMNKFQS-----HHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLS 695
            LR SM KFQ+     H+  LEI S     P  LNRQ+I LLS L VPD+ F  +Q   L 
Sbjct: 1354 LRPSMKKFQADLTQQHNCILEIISINGDNPCHLNRQVINLLSGLGVPDQYFLRLQKEALM 1413

Query: 696  KLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLRE 755
             L  +L +   +       C+E  +   +      + +++P +R ++  +    +    +
Sbjct: 1414 DLADLLHNPAESIR-----CSE--DLPWLRTIEKEDLRSDPMIRSLVHLVYQKSIAEYSD 1466

Query: 756  KARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFV 815
            K  I +  G+ ++G LDE G+LE GQ +I +         +K+G          VI+G V
Sbjct: 1467 KCFIPIANGKTIIGVLDETGLLEAGQVYINIYN-------TKNGQSM-------VIQGAV 1512

Query: 816  VIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 875
             + KNPCLHPGD+RIL+  D   L HL + +VF  +GD P   + SGSDLDGD YF+ +D
Sbjct: 1513 AVCKNPCLHPGDVRILQGTDIELLSHLKNVVVFSARGDNPDFKKCSGSDLDGDRYFICYD 1572

Query: 876  ENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHS 935
              +I  + + +    Y        T P++Q  I+  + K +    LG I  +H+  +D  
Sbjct: 1573 PEVI-STVRQYEDYHYEDPIKVKQTIPINQSTILAQYLKSIDKGTLGKIALSHLAVSD-- 1629

Query: 936  EYGALDENCILLAELAATAVDFPKTGKIVTMPAH 969
                LD   I L+   +  VD PKTG  V+   H
Sbjct: 1630 RLTPLDPLAIALSIQHSIEVDSPKTGVHVSAYYH 1663


>gi|353235419|emb|CCA67432.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora
           indica DSM 11827]
          Length = 1186

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 191/636 (30%), Positives = 311/636 (48%), Gaps = 88/636 (13%)

Query: 410 IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDE-GLQTMNANVLSYF 468
           + E  R  ITP+      P  + +NRV+RKY+  A +F+R+ F +E GL       +   
Sbjct: 397 VFECHRATITPSSIILTGPLPDETNRVIRKYRKYAHKFIRIDFTEEDGLHLRKEKNVD-- 454

Query: 469 IAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS--- 525
           +  I+ D              R+   +  G  + GR+F FLA+SSS L++ + WF +   
Sbjct: 455 LGAILDD--------------RIGEFMKNGLLVAGRRFEFLAYSSSALKEHAVWFMTPFT 500

Query: 526 -EDGK-TSVLDIKKWMGRFTDKNI---AKCAARMGQCFSSTYATVEVPPTEVDPELPDIK 580
             DG+  +   I++ +G F+ K I   ++  AR+ Q FSST  ++ +   E+   +PD +
Sbjct: 501 TSDGQYVTSESIRRSLGDFS-KVIYCPSRYGARLSQAFSSTEPSITIKVNEIR-FIPDKE 558

Query: 581 RN-GYVFSDGIGKITPDLAMEVAQK-------LKLDVNPPPCAYQIRYAGCKGVVACWPA 632
            + G +++DG+G ++P +A E+  K               P A+QIR  G KG++ C  +
Sbjct: 559 SDQGSLYTDGVGTMSPQVAEEIWAKYTEPRSKRSRRRLKTPSAFQIRLGGLKGML-CVDS 617

Query: 633 KGDGIRMSLRESMNKFQSHHTTLEIC-SWTRFQPGFLNRQIITLLSTLN-VPDEMFWSMQ 690
           +  G  + +R+SMNKF S+   +EI  ++ R    FLNR +I LL TL  VP E F ++Q
Sbjct: 618 RLQGRVVCVRDSMNKFHSNDREVEIARAFDRPMTMFLNRPLIMLLETLKKVPLEPFMALQ 677

Query: 691 DSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGF------------NPQTE--- 735
              + +    +   D A  +L     + G   A  L++ F              Q++   
Sbjct: 678 TKAVEETRDAMKSFDTAARLLE----QYGLGTAFRLTSVFLQLHKLDVALALKDQSQGLL 733

Query: 736 PHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCF 795
           P L  ML  +    L  L+ KARI VP    L+G  DE   L   + + +V         
Sbjct: 734 PFLGRMLQFVENHILRDLKYKARIPVPNAWTLVGVSDEYDYLGENEIYARV--------- 784

Query: 796 SKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE------LHHLYDCLVFP 849
                R  + ++ Q ++G V+I+++P +HPGD R++ A+  P       L  L +C+VFP
Sbjct: 785 -----RTIDGEE-QYLEGPVMISRSPTVHPGDARMVWAIGKPSRGAPPGLEDLTNCVVFP 838

Query: 850 QKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDII 909
            KG        +G DLDGDLY +  D  L    +  +   +Y+  +  TL RP   +D+ 
Sbjct: 839 CKGHPSLPQCLAGGDLDGDLYCLVLDPQL--HFRWQFQHGDYDPPQLVTLDRPSTIKDVA 896

Query: 910 EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIV---TM 966
           +F   ++ N+ LG I    ++ AD  E    DE+C+ LA+L + AVD+PKTG+ V    M
Sbjct: 897 QFVINYIKNDLLGVISTRSMLIADIREDCLADEDCVKLAKLHSIAVDYPKTGRHVEFEQM 956

Query: 967 PAHLKPKLYPDFMGKEAYQS----YKSNKILGRLYR 998
           P+ L+    PD+   E   +    Y+SN+ +G L+R
Sbjct: 957 PS-LESNRRPDWHANELNDNDPELYQSNRHIGHLFR 991


>gi|340505285|gb|EGR31631.1| RNA-dependent rna polymerase, putative [Ichthyophthirius multifiliis]
          Length = 592

 Score =  229 bits (585), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 148/440 (33%), Positives = 220/440 (50%), Gaps = 54/440 (12%)

Query: 597  LAMEVAQKLKLDVNP--------PPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKF 648
            L ME+ Q  K+  N          P A+++   G KGV+           + LR SM KF
Sbjct: 100  LQMELVQFQKIQSNKYARNLIQIQPHAFKLDLLGSKGVLMQMKFIEKNT-IILRNSMKKF 158

Query: 649  ----QSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQ----- 699
                +     ++I    +++ G+LNRQ+I LL +L + D++F  +Q+  L  L +     
Sbjct: 159  DVLNEGDKLYIDILDMNKYRNGYLNRQVIILLKSLGIQDKIFRDLQNEFLQMLEKEGFKD 218

Query: 700  ----MLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQ----TEPHLRGMLTCIRAAQLW 751
                 L + D   E L     E+ +   ++L   ++ Q     +P + G+L  ++    +
Sbjct: 219  ANFYNLFNVDFE-ENLVEKNIEKLDRITVLLKKMYDEQLYRKKDPFIDGVLNSLKYRGYY 277

Query: 752  GLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVI 811
             L++K  I+V     L+G LDE  +LE  Q +           +SK G  F E      I
Sbjct: 278  ILKKKCNIYVEKSARLLGILDEFNLLEENQVYAN---------YSKDGELFQE------I 322

Query: 812  KGFVVIAKNPCLHPGDIRILEAVDHPE------LHHLYDCLVFPQKGDRPHTNEASGSDL 865
            +G V++ KNPCLHPGDIRIL AV          L    + L+FP+KG  P   + +GSDL
Sbjct: 323  EGKVIVVKNPCLHPGDIRILNAVSTKNDKKYNFLKEYKNVLIFPKKGKIPIAAQIAGSDL 382

Query: 866  DGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKT----LTRPVDQRDIIEFFAKHMVNENL 921
            DGD YF+ WDE LIP   K   P +Y+    K     L   ++ + +++FF   +  ENL
Sbjct: 383  DGDQYFICWDERLIP--NKEVIPFDYDQENNKNIQQNLQNQINDQQMLDFFIDFINCENL 440

Query: 922  GTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGK 981
            G I N+H+  AD S + ALD  CI LA+L A AVD+ KTG    +P +L+ K +PD+M K
Sbjct: 441  GKIDNSHLAIADQSSFFALDFRCIQLAKLHAQAVDYAKTGVSPYVPLNLQSKQFPDYMEK 500

Query: 982  EAYQSYKSNKILGRLYRQSK 1001
                 Y+S  +LG LYRQ K
Sbjct: 501  SDKNQYESKSVLGYLYRQVK 520


>gi|169844306|ref|XP_001828874.1| RNA-directed RNA polymerase 2 [Coprinopsis cinerea okayama7#130]
 gi|116509986|gb|EAU92881.1| RNA-directed RNA polymerase 2 [Coprinopsis cinerea okayama7#130]
          Length = 1232

 Score =  229 bits (583), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 201/648 (31%), Positives = 301/648 (46%), Gaps = 97/648 (14%)

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDL-ADRFLRVTFMDEGLQTMNANVLSYF 468
            + + + + ITPTK     P  E SNRV+R Y+    + FLRVTF DEG     +N     
Sbjct: 420  LYQAQHVTITPTKILLEGPFPERSNRVIRAYEPRHQESFLRVTFADEGRLQYRSND---- 475

Query: 469  IAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF---- 524
                 R++   +F     V +R    L  G  +  R F FLA+S S L++ S WF     
Sbjct: 476  -----RELDHEAF-----VRERFGEFLLNGLTIAKRHFRFLAYSQSALKEHSVWFVKPFV 525

Query: 525  -SEDGKTSVLDIKKWMGRFT----DKNIAKC----AARMGQCFSSTYA---TVEVPPTEV 572
             ++ G  +   I   +G F     D  +  C    AAR+ Q F++T A    VE      
Sbjct: 526  DTKHGLVNAESIIHSLGNFDGLDFDSQLMHCPARYAARLSQAFTATDACIIEVEEIINGR 585

Query: 573  DPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL------DVNPPPCAYQIRYAGCKGV 626
            D E+   +   Y F+DG+G ++P+LA E+ + LK        V   P AYQ+R+ G KG+
Sbjct: 586  DIEVVSPEGQKYCFTDGVGTLSPELAREIWKHLKRTKRRARSVKGHPAAYQVRFMGSKGM 645

Query: 627  VACWPAKGDGIRMSLRESMNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDE 684
            ++    +  G  + LR SM KF++ ++  +EI  S+ R  P FLNR +ITLL  L VP  
Sbjct: 646  LSV-DYRLQGSTIYLRPSMIKFEAPNSRAIEIARSFDRPTPYFLNRPLITLLEGLGVPLS 704

Query: 685  MFWSMQDSMLSKLNQMLVDSDVAFEVL-TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLT 743
             F   QD  + +  Q       A  +L T          ++M S   N    P L     
Sbjct: 705  TFKFFQDRAVRETQQAASSLATAAAMLDTYGLGASFRLPSVMNS--LNKLGIPVLNQDRF 762

Query: 744  CIRAAQ------LWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSK 797
              RA +      L  L+  ARI VP    L+G  D    L+  Q F  V +P        
Sbjct: 763  LSRAMEYAINHILRLLKNHARIPVPGAWTLVGVADVHRFLQPRQIFAYV-KPL------- 814

Query: 798  HGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE----LHH--LYDCLVFPQK 851
                     +   ++G V+I+++P +HPGD+++++A+ HP       H  L + +VF   
Sbjct: 815  -------NSRGIYLEGPVLISRSPTIHPGDVQLVQAIGHPPPDSPFAHEPLANTVVFSVL 867

Query: 852  GDRPHTNEASGSDLDGDLYFVTWDENLIP-------------PSKKSWPPMEYNAAEAKT 898
            GDRP  +   G DLDGD+Y      NLIP             P +    P +Y  A+ K 
Sbjct: 868  GDRPLPSCLGGGDLDGDIY------NLIPLEDPQRPELRGFTPVRPLQAPSQYAPAQRKI 921

Query: 899  LTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFP 958
            L R    RD+ EF  ++++++ LG I    ++ AD S  G  D +C+ LA+L + AVD+P
Sbjct: 922  LDRKATMRDVAEFVMEYILSDVLGIIAINWLIIADQSPRGIYDSDCLKLADLHSDAVDYP 981

Query: 959  KTGKIVTMP--AHLKPKLYPDFMGKEAYQS------YKSNKILGRLYR 998
            KTG  V +     LK +  PD+   E   +      Y S+K +G+L+R
Sbjct: 982  KTGNPVALTNIPRLKYRTKPDWNAPETVDTSASGNYYTSSKAIGKLFR 1029


>gi|407926953|gb|EKG19860.1| PhoH-like protein [Macrophomina phaseolina MS6]
          Length = 1608

 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 167/532 (31%), Positives = 261/532 (49%), Gaps = 57/532 (10%)

Query: 491 VRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAK 549
           +  +L  G    G  ++F   S+SQL+  S   F+ D + ++    + +G F+    + K
Sbjct: 13  ISRLLKSGIRFNGVHYNFYGHSNSQLKTRSCVLFA-DTRAAIHRKIESLGDFSKMTTVGK 71

Query: 550 CAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL-- 607
            A R+G  FSS    VE+ P E   ++PD++ N Y+F+DG G I+P LA  + Q + +  
Sbjct: 72  KAKRIGLLFSSAEMGVELAP-ERCADIPDVEANDYIFTDGCGLISPHLARSLVQSVHIAF 130

Query: 608 -DVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQS-HHTTLEICSWTR-FQ 664
            +V   P  +QIRY G KGV++  P+ G       R SM KF+     TL +  +++ + 
Sbjct: 131 RNVKYIPSVFQIRYRGYKGVLSLDPSMGSQCLAKFRSSMKKFRGGDDLTLSVVDYSKPYT 190

Query: 665 PGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML-VDSDVAFEVLTAACAEQGNTAA 723
            G+LN +++ LL  L VPDE+F   Q   L  L  +  +D  + F  L+     + + A 
Sbjct: 191 FGYLNDEVVLLLHALRVPDEVFLRKQAEHLHFLESVTRLDVRMCFRFLSYC--NRLDLAE 248

Query: 724 IMLSAGFNPQTEPHLRGMLTCIRAAQLWGLRE-KARIFVPAGRWLMGCLDELGVLEGGQC 782
            +L +G     E  +R M+       L    E + RI +P  R L G  D  G+L+ G+C
Sbjct: 249 RLLISGVEA-VERDVRKMVGQEYERMLTKRNEQRCRILIPQSRLLFGVCDTKGLLKEGEC 307

Query: 783 FIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
            ++V+           G   A+T    ++   V++ +NPCLHPGD++   AV HPEL HL
Sbjct: 308 VVRVT---------MDGDGQAQT----IVGTQVLVTRNPCLHPGDLQKFRAVFHPELSHL 354

Query: 843 YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRP 902
            DC+VFP  G RP  +  SG DLDGD +FV WD++LIP       P EY   +A+   +P
Sbjct: 355 VDCVVFPTAGKRPSADLMSGGDLDGDKFFVCWDKDLIPTVASQ--PAEYPGPKAQIALKP 412

Query: 903 VDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGK 962
           + + D I++FA++  N +LG + N  +  A    +G L   C  L  L +  VD    G 
Sbjct: 413 ITEDDRIDYFAQYS-NMSLGRVKNLFLAWA--RLHGPLSPQCQQLNRLFSLCVD----GN 465

Query: 963 IVTMPAHLK---------PKLYPDFMGKEA-------------YQSYKSNKI 992
            + +P  L+         P L  D + ++A             Y  Y SN +
Sbjct: 466 RIKIPQDLQDPPKGPVPSPGLIVDRLHEQASAIIQRSLSEPAIYHGYSSNAV 517


>gi|290993029|ref|XP_002679136.1| predicted protein [Naegleria gruberi]
 gi|284092751|gb|EFC46392.1| predicted protein [Naegleria gruberi]
          Length = 464

 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 157/483 (32%), Positives = 238/483 (49%), Gaps = 43/483 (8%)

Query: 539 MGRFTDKNI-AKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDL 597
           +G F+   + A+ AAR+GQCFS TY  +     E+   +PDI RN YVF+DG+G+I+ + 
Sbjct: 1   LGNFSHIKVKARYAARIGQCFSHTYEGIS-KEYEI---IPDITRNNYVFTDGVGRISLEF 56

Query: 598 AMEVAQKLKLDVNPP---PCAYQIRYAGCKGVVACWP--AKGDGIRMSLRESMNKF-QSH 651
           A+E+ +K ++        P A+Q R  G KGVV   P       + + L +S  KF  S 
Sbjct: 57  AVELTKKFQISFAGKEYIPSAFQFRMGGLKGVVVVDPDIHLYSDLDLLLSKSQEKFIDSS 116

Query: 652 HTTLEICSWT-RFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEV 710
            +  E+ +++ R +   LNRQ+I LLS+  V D +F  + D  L ++ ++  D      V
Sbjct: 117 SSEFELITYSKRNRFASLNRQLIALLSSNKVSDSVFLQLLDRDLEEIKKLFNDKKYMRRV 176

Query: 711 LTAACAE-QGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMG 769
           L  +     G     + S  +        + + +       + +    RI +     LMG
Sbjct: 177 LRKSQDNIVGKNMKKVASLNYLDSQYDFSKVVQSGEDIKFFYQIEPNGRIILDKALLLMG 236

Query: 770 CLDELGVLEGGQCFIQVSEP-------FLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPC 822
            +D  GVLE  + FIQ+SE        +  NCF   G+          + G V I ++PC
Sbjct: 237 VVDFYGVLEEDEVFIQLSELENSDSDLYDDNCFVNGGT----------LSGTVAITRSPC 286

Query: 823 LHPGDIRILEAVDHPE----LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENL 878
           LHPGDIR  +AV  PE    L HL D +VF QKG+RP  N+ SG D DGD + V WD  L
Sbjct: 287 LHPGDIRKFKAVTDPEKISKLSHLRDVIVFSQKGNRPAANKMSGGDYDGDFFQVFWDPLL 346

Query: 879 IPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYG 938
           +  + + +PPM Y     +      D R I EF  ++++N+NLG +   H+ H D    G
Sbjct: 347 V--NFEEYPPMNYEGLPPEEKHDGCDYRVIREFLTEYIINDNLGVVAFLHLEHYDKEGDG 404

Query: 939 ALDENCILLAELAATAVDFPKTGKIVTMPAHL----KPKLYPDFMGKEAYQSYKSNKILG 994
              E C+ LA+  +  VD+ KTG    +P  L    +P   P   GK   ++Y S  ++G
Sbjct: 405 LRSEPCLKLAKHHSYQVDYAKTGVRKPLPTELFSNSRPHYMPRVFGK---KTYHSEDVIG 461

Query: 995 RLY 997
            +Y
Sbjct: 462 SIY 464


>gi|426198551|gb|EKV48477.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
          Length = 1258

 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 195/686 (28%), Positives = 316/686 (46%), Gaps = 93/686 (13%)

Query: 401  YKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTM 460
            Y  PK   DI   R +  TPT+     P    SNR++R+Y    + F+RV F DE     
Sbjct: 413  YIPPKATLDIFRCRHVTFTPTRMLMEGPYATQSNRIIRQYSGYEEFFIRVDFRDEDRLQY 472

Query: 461  NANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCS 520
              N          R++   SF     V +RV +IL  GF + GR+F FLA+SSS LR+ +
Sbjct: 473  RWN----------REVDGASF-----VRERVGTILKDGFTIAGRQFEFLAYSSSALREHA 517

Query: 521  AWFF-------SEDGKTSVLDIKKWMGRF--TD--KNIAKCAARMGQCFSSTYATVEVPP 569
             WF         + G+   + I++ +G F  TD  K  +K AAR+ Q F++T A+V +  
Sbjct: 518  VWFMCPFEHHDPKYGRVDSMKIREQIGNFKGTDLMKQPSKYAARLAQAFTATEASVSIKR 577

Query: 570  TEVD-------PELPDIKRNGYVFSDGIGKITPDLAMEVAQKL------KLDVNPPPCAY 616
             E +       P+  D K N Y+F+DG+G I+  L  ++  +L        + +  P AY
Sbjct: 578  DEWEEIEDIKPPKFEDGKPNPYLFTDGVGSISKSLGDKIWAELCSNRRDHGENSIQPSAY 637

Query: 617  QIRYAGCKGVVAC---WPAKGDGIRMSLRESMNKF---QSHHTTLEIC-SWTRFQPGFLN 669
            QIR+ G KGVVA        G G  M LR SM KF         +EI  ++      +LN
Sbjct: 638  QIRFLGYKGVVAVDEQLDKTGAGKHMRLRNSMRKFLVVNDDVAPIEIAQAFAHPNRCYLN 697

Query: 670  RQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT----------AACAEQG 719
            R ++ LL  L V  + F ++QD  ++K   +    D    V++          +   +Q 
Sbjct: 698  RPLVMLLEDLGVNVDAFLTLQDKEVAKARTIHDSIDRFLSVISEHGLGRSFRFSYLVKQL 757

Query: 720  NTAAIMLSAG----FNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDE-- 773
                + +++      N  T P L+ +        +  ++  ARI VP    L+G  DE  
Sbjct: 758  QGLGLEINSKDPDKLNVDT-PFLKQVREVAMMDVMRDIKHSARILVPDSHLLVGIADEGP 816

Query: 774  LGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEA 833
              V  G +    +   F+  C  +     +   K + ++G  ++ ++P  H GD++ + A
Sbjct: 817  AYVSAGFENVYCLPPGFIYACVQE-----SPDGKAEWLEGHCLVTRSPVAHIGDVQRVRA 871

Query: 834  VDHPE------LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWP 887
            +  P         H+ + LV   +G+R   +   G D+DGDL+ V   E L+P + +   
Sbjct: 872  IGKPPQGKLCLFSHIKNALVMSSQGNRSLASCLGGGDVDGDLFQVIQYEPLLPMTYEL-- 929

Query: 888  PMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILL 947
            PMEY +   K +T      DI +F  +++ ++ LG + +  ++ AD S+ G  D++CI L
Sbjct: 930  PMEYESVGTKAITTECTVDDICDFVVEYINSDVLGLLSDRLLMIADQSKLGMNDKDCIRL 989

Query: 948  AELAATAVDFPKTGKIVTMPAHLKP----KLYPDFMGKEAYQS-----YKSNKILGRLYR 998
            AEL + AVD+PK G  V +     P    +  PD+   E         Y+S + LG LYR
Sbjct: 990  AELCSQAVDYPKNGIPVDLNKEKLPHTLIRCKPDWHAAEVVSPRETDYYRSTRALGELYR 1049

Query: 999  QSKDAYDEDISVSSEVDINPVDIHYD 1024
                    +IS++    + PV  +++
Sbjct: 1050 --------NISLTEPEPMKPVSKNFE 1067


>gi|409079686|gb|EKM80047.1| hypothetical protein AGABI1DRAFT_72859 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1258

 Score =  227 bits (579), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 195/686 (28%), Positives = 315/686 (45%), Gaps = 93/686 (13%)

Query: 401  YKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTM 460
            Y  PK   DI   R +  TPT+     P    SNR++R+Y    + F+RV F DE     
Sbjct: 413  YVPPKATLDIFRCRHVTFTPTRMLMEGPYATQSNRIIRQYSGYEEFFIRVDFRDEDRLQY 472

Query: 461  NANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCS 520
              N          R++   SF     V +RV +IL  GF + GR+F FLA+SSS LR+ +
Sbjct: 473  RWN----------REVDGASF-----VRERVGTILKDGFTIAGRQFEFLAYSSSALREHA 517

Query: 521  AWFF-------SEDGKTSVLDIKKWMGRF--TD--KNIAKCAARMGQCFSSTYATVEVPP 569
             WF         + G+   + I++ +G F  TD  K  +K AAR+ Q F++T A+V +  
Sbjct: 518  VWFMCPFEHHDPKYGRVDSMKIREQIGNFKGTDLMKQPSKYAARLAQAFTATEASVSIKR 577

Query: 570  TEVD-------PELPDIKRNGYVFSDGIGKITPDLAMEVAQKL------KLDVNPPPCAY 616
             E +       P   D K N Y+F+DG+G I+  L  ++  +L        + +  P AY
Sbjct: 578  DEWEEIEDIKPPNFEDGKPNPYLFTDGVGSISKSLGDKIWAELCSNRRDHGENSIQPSAY 637

Query: 617  QIRYAGCKGVVAC---WPAKGDGIRMSLRESMNKF---QSHHTTLEIC-SWTRFQPGFLN 669
            QIR+ G KGVVA        G G  M LR SM KF         +EI  ++      +LN
Sbjct: 638  QIRFLGYKGVVAVDEQLDKTGAGKHMRLRNSMRKFLVVNDDVAPIEIAQAFAHPNRCYLN 697

Query: 670  RQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT----------AACAEQG 719
            R ++ LL  L V  + F ++QD  ++K   +    D    V++          +   +Q 
Sbjct: 698  RPLVMLLEDLGVNVDAFLTLQDKEVAKARTIHDSIDRFLSVISEHGLGRSFRFSYLVKQL 757

Query: 720  NTAAIMLSAG----FNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDE-- 773
                + +++      N  T P L+ +        +  ++  ARI VP    L+G  DE  
Sbjct: 758  QGLGLEINSKDPDKLNVDT-PFLKQVREVAMMDVMRDIKHSARILVPDSHLLVGIADEGP 816

Query: 774  LGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEA 833
              V  G +    +   F+  C  +     +   K + ++G  ++ ++P  H GD++ + A
Sbjct: 817  AYVSAGFENVYCLPPGFIYACVQE-----SPDGKAEWLEGHCLVTRSPVAHIGDVQRVRA 871

Query: 834  VDHPE------LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWP 887
            +  P         H+ + LV   +G+R   +   G D+DGDL+ V   E L+P + +   
Sbjct: 872  IGKPPQGKLCLFSHIKNALVMSSQGNRSLASCLGGGDVDGDLFQVIQYEPLLPMTYEL-- 929

Query: 888  PMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILL 947
            PMEY +   K +T      DI +F  +++ ++ LG + +  ++ AD S+ G  D++CI L
Sbjct: 930  PMEYESVGTKAITTECTVDDICDFVVEYINSDVLGLLSDRLLMIADQSKLGMNDKDCIRL 989

Query: 948  AELAATAVDFPKTGKIVTMPAHLKP----KLYPDFMGKEAYQS-----YKSNKILGRLYR 998
            AEL + AVD+PK G  V +     P    +  PD+   E         Y+S + LG LYR
Sbjct: 990  AELCSQAVDYPKNGIPVDLNKEKLPHTLIRCKPDWHAAEVVSPRETDYYRSTRALGELYR 1049

Query: 999  QSKDAYDEDISVSSEVDINPVDIHYD 1024
                    +IS++    + PV  +++
Sbjct: 1050 --------NISLTEPEPMKPVSKNFE 1067


>gi|409080807|gb|EKM81167.1| hypothetical protein AGABI1DRAFT_56570 [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 1201

 Score =  226 bits (577), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 190/638 (29%), Positives = 306/638 (47%), Gaps = 100/638 (15%)

Query: 415 RLVITPTKAYCLPPEVELSNRVLRKY-KDLADRFLRVTFMDEGLQTMNANVLSYFIAPIV 473
           ++ I+PT  +   P ++ SNRVLR+Y K   + FLRV F DE       N L Y      
Sbjct: 400 QVTISPTSIFLNGPFIDKSNRVLRRYSKANHENFLRVEFRDE-------NNLQYRSD--- 449

Query: 474 RDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS--EDGKTS 531
           +DI    F     V +R+   +  G  + GR+F FLA+S S LR+ S WF     D K  
Sbjct: 450 KDIDDEEF-----VRRRLGHFMHEGLVIAGRRFRFLAYSQSALREHSVWFVKAFRDPKHG 504

Query: 532 VLDIKKW---MGRFT----DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRN-- 582
           +++  K    +G F     D+ +  C AR G   S  ++  +    EVD  L  IKR+  
Sbjct: 505 IVNAGKIIESLGNFRDLAYDRTLGYCPARFGARVSQAFSATDAAIVEVDEIL--IKRDIT 562

Query: 583 ----GYVFSDGIGKITPDLAMEVAQKL--KLDVNPPPCAYQIRYAGCKGVVACWPAKGDG 636
                Y F+DG G ++ DLA ++  ++  K D N  P AYQIR+ G KG+++        
Sbjct: 563 TPDGQYTFTDGSGDMSADLARDIWHRIARKRDRNDFPRAYQIRHEGSKGMISVDYRLNGS 622

Query: 637 IRMSLRESMNKFQSHHTT-LEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSML 694
             +SLR+SM KF +  +  +E+  +  +  P +LNR +I +L  L V  E+F   QD  +
Sbjct: 623 NTLSLRDSMIKFDAPESNEIEVSRAIDQPTPYYLNRFLIMILEGLGVKHEVFQGFQDEAV 682

Query: 695 SKLNQMLVDSDVAFEVLTAAC--------AEQGNTAAIML-SAGFNPQTEPHLR-GMLTC 744
               Q +     A  +L A          +   N + + L +   +P  +  LR G+   
Sbjct: 683 RGTQQAMEHLSSASHLLQAHGLGLTFKIPSTMANLSKLDLDNLARDPLFDQPLRLGVYHV 742

Query: 745 IRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAE 804
           +R      L+ KARI +P    L+G  D  G L+  + F+ +  P  G+ +         
Sbjct: 743 LR-----DLKYKARIPIPNAWTLVGVADTHGYLKADEVFVCIKHPEKGSFY--------- 788

Query: 805 TKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL------HHLYDCLVFPQKGDRPHTN 858
                 ++G V+I+++P +HPGD+++  A+  P          L + +VF  KGDRP  +
Sbjct: 789 ------LEGPVLISRSPTIHPGDVQLAMAIGGPRQGSPFAREPLPNTVVFSVKGDRPLPS 842

Query: 859 EASGSDLDGDLYFVTWDENLIP-------PSKKSWPPMEYNAAEAKTLTRPVDQRDIIEF 911
              G DLDGD Y      N+IP         +K++ P  Y AAE +    P   +D+ +F
Sbjct: 843 CLGGGDLDGDPY------NIIPLRDHPYFTPEKTYEPANYEAAEKQLTEWPCTMKDVADF 896

Query: 912 FAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT---MPA 968
             +++V++ +G +    ++ AD  +    D++C++LA+L + AVD+PKTG+ V    +P 
Sbjct: 897 VMQYIVSDVIGVVATNWLIIADQRQ-DITDDDCLVLAKLHSDAVDYPKTGRPVQQDHIPR 955

Query: 969 HLKPKLYPDFMGKEAYQS--------YKSNKILGRLYR 998
              PK  PD++  E  ++        Y+S   LG+L R
Sbjct: 956 PRNPK--PDWLAPETLENVLSQGGRYYESQTALGKLTR 991


>gi|330794390|ref|XP_003285262.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
 gi|325084804|gb|EGC38224.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
          Length = 2292

 Score =  226 bits (575), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 208/723 (28%), Positives = 327/723 (45%), Gaps = 78/723 (10%)

Query: 408  DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSY 467
            D  + V+ + +TPT+   +PP +   NRV+R + +   RFL   F DE  +       S+
Sbjct: 1075 DLFIPVKEVFVTPTRIVLVPPRLTSGNRVIRSFGNDPSRFLLYNFTDENFEPFLGLNKSH 1134

Query: 468  FIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSED 527
               P++ D        +++  K    I+     L G  + ++  S SQ +  SAWF+ ED
Sbjct: 1135 ---PLILD-------GQSKHLKNGLEIIP----LSGEYYRYIGNSQSQSKKYSAWFYLED 1180

Query: 528  GKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDI--KRNGYV 585
             K  + D  KW G  T   + K   +    FSST  ++ +  ++    + D+      + 
Sbjct: 1181 PKYKIEDAFKWSGIDTSIPMRKVYRQFCLLFSSTSKSIVIDKSKY-KTIDDVYDSTGAHN 1239

Query: 586  FSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVV------ACWPAKGDGIRM 639
            F++G G I   L   + +K+  + +P  CAYQIR  G KGVV      +     G  I M
Sbjct: 1240 FTEGCGIIGKYLVDAINKKM--NYHPCTCAYQIRIGGSKGVVVLNDTDSISLGNGKSIPM 1297

Query: 640  S-----LRESMNKFQSH------HTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWS 688
                  +RESM KF         H TLEI S +      LNRQ I LL      +    S
Sbjct: 1298 DPTCIYIRESMTKFMKDPSDDETHRTLEIISVSTTSRCKLNRQAINLLLNAGTEESSILS 1357

Query: 689  MQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAA 748
              D  L++  Q LVD  ++ ++L        N +   L   FN   + ++R ++      
Sbjct: 1358 FLDKSLNENAQTLVDIGLSKDLLNEFYP---NISEYEL---FN---DYYIRTIVLKHFKT 1408

Query: 749  QLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKL 808
            +L  +++K  I V   R ++G  D  G L   Q +++V++      F  + +      + 
Sbjct: 1409 KLLRIQDKCHIEVEDSRNVLGVTDFSGKLGPNQVYLEVAD------FDDNNNII----RS 1458

Query: 809  QVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGD 868
            +VI G V + KNPC HPGDIRILEAVD P LH   + L F   G+ P+  E SGSDLDGD
Sbjct: 1459 KVITGRVAVLKNPCHHPGDIRILEAVDIPLLHGKRNILFFSINGEVPNFKECSGSDLDGD 1518

Query: 869  LYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAH 928
             YF+ +D  LI    K+  P      E+   T   +   + + +  ++   NLG + N H
Sbjct: 1519 RYFIVYDNVLINDKMKNSDPY---LGESVAATVGGEGEGLHDVYLFNIDKTNLGKLSNKH 1575

Query: 929  VVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKL----YPDFMGKEAY 984
            ++ +D    G   E  I LA   A  VD  KT K   +PA+ K  +     P FM     
Sbjct: 1576 LIISDLE--GVDSEIAIDLAIQCAIEVDSVKTNKHGVLPANAKAAMNKCGIPHFMASTTL 1633

Query: 985  QS---YKSNKILGRLY-RQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAW 1040
             +   Y S+K++G++Y   S+  +  D     +VD N +   Y   ++    + +     
Sbjct: 1634 GTTNIYHSDKVIGQIYDSASRLMWFGDFLPEIKVDENMLVDGYKNYIDQKNLITYRL--- 1690

Query: 1041 NQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFR 1100
                 Y  ++N LL  Y  N EE+L+ G +   PK   +   ++K ++K  Y  ++ EF 
Sbjct: 1691 -----YKTRINNLLRIYGSNSEEDLLLGFVD--PKLVEKWTNDVKRQIKEKYFKIQDEFY 1743

Query: 1101 QVF 1103
            Q F
Sbjct: 1744 QYF 1746


>gi|225680005|gb|EEH18289.1| RNA-directed RNA polymerase Rdp1 [Paracoccidioides brasiliensis Pb03]
          Length = 1258

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 151/436 (34%), Positives = 232/436 (53%), Gaps = 40/436 (9%)

Query: 692  SMLSKLNQMLVDSDVAFEVLTAACAE------QGNTAAIMLSAGFNPQTEPHLRGMLTCI 745
             ++SK    ++ S+ A E L+            G    + +S+  + + +P +  +L   
Sbjct: 548  GLISKFLAQMIQSEFAIETLSGEPPSVFQFRLGGCKGILTVSSKAHRREDPFVTSLLELW 607

Query: 746  RAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG---------GQCFIQ----VSEPFLG 792
            R  Q+  L+EKA+I +  G +L+GCLDE G L+G         G  + Q    + E F+ 
Sbjct: 608  RVWQIKYLKEKAKIAIDKGAFLLGCLDETGSLKGYFRSKRLGGGATYEQKLDCLPEIFVQ 667

Query: 793  NCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKG 852
                  G+        +VI+G  ++A+NP LHPGDIR+++AVD P LHHL D +V PQ G
Sbjct: 668  ILRHSEGT-------YEVIEGLCILARNPSLHPGDIRVVKAVDIPGLHHLKDVVVLPQTG 720

Query: 853  DRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIE 910
            DR   +  SG DLDGD Y V WD++L+P   K W   PM+Y+A ++K L R V   DII+
Sbjct: 721  DRDIASMCSGGDLDGDDYVVIWDQDLLP---KDWFEEPMDYSAPKSKVLDRDVTVDDIIK 777

Query: 911  FFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHL 970
            FF  +M N+ L  I  AH+  AD+S+ G  DE C+ LA L + AVD+ K+G  V M   L
Sbjct: 778  FFVSYMQNDRLPQIALAHLAIADYSDDGVQDEKCLRLATLHSAAVDYNKSGIPVRMNQDL 837

Query: 971  KPKLYPDFMGKEAYQ---SYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIH-YDTD 1026
            +PK +P FM ++  +    Y S KILG+LY  +   Y    S S++  + P D    + +
Sbjct: 838  RPKKWPHFMERKFAKKDSQYTSRKILGQLYDIAGGVYLNLQSHSAKGRL-PFDQRILNAN 896

Query: 1027 LEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKE 1086
             E+ E +  ++ A   K  YD  L  ++ Q+++  EEE+ +  + S    N  K  +  E
Sbjct: 897  FEIDEKL--LSFAKELKGEYDADLRRIMAQHEIQSEEEVWSTFVLS--HANMSKDYKFHE 952

Query: 1087 RLKHSYSALRKEFRQV 1102
             +    SALR++FR +
Sbjct: 953  EIGRISSALRQKFRML 968



 Score =  147 bits (370), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 157/307 (51%), Gaps = 31/307 (10%)

Query: 328 ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRL 387
           + F + + +   +    +N++ +   F D L     +  +  L ++YS K         +
Sbjct: 308 LEFAVRYYLEVCISYRYLNEYAIKKKFVDELARIGEKKAIYLLGYVYSNK---------I 358

Query: 388 KLVQEWLLKDPELYKGPK-QIDDIVEVRRLV-ITPTKAYCLPPEVELSNRVLRKYKDLAD 445
             +  W+      ++ P   I+ I+   +   +TP+  Y  PP ++  NRV R+Y++ AD
Sbjct: 359 AYLIPWIYS---TFESPIFLIEQIIPGHQSAEVTPSTIYYKPPSIDTGNRVFRRYREYAD 415

Query: 446 RFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRK 505
           RFLRV F DE  + M   +  Y  A IV    +N       V+ RV   +  G  +  R 
Sbjct: 416 RFLRVRFTDE--KNM-GKIFPYSNANIV---CMNE------VYTRVTLTMKNGITIGDRC 463

Query: 506 FSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYAT 564
           + FLAFS++QLR+ +A+FF+     +  +I+  +G+F   +N+AK AAR+GQCFSST A 
Sbjct: 464 YEFLAFSNAQLREHAAYFFASLPHLTAANIRAQLGKFNPIRNVAKHAARVGQCFSSTRAL 523

Query: 565 VEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV--NPPPCAYQIRYAG 622
              P   V  E+ DI+RNGY FSDG+G I+  LA  +  +  ++     PP  +Q R  G
Sbjct: 524 TGCPVQIV--EIDDIERNGYTFSDGVGLISKFLAQMIQSEFAIETLSGEPPSVFQFRLGG 581

Query: 623 CKGVVAC 629
           CKG++  
Sbjct: 582 CKGILTV 588


>gi|426197722|gb|EKV47649.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
          Length = 1202

 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 189/636 (29%), Positives = 301/636 (47%), Gaps = 96/636 (15%)

Query: 415 RLVITPTKAYCLPPEVELSNRVLRKY-KDLADRFLRVTFMDEGLQTMNANVLSYFIAPIV 473
           ++ I+PT  +   P ++ SNRVLR+Y K   + FLRV F DE       N L Y      
Sbjct: 402 QVTISPTSIFLNGPFIDKSNRVLRRYSKANHENFLRVEFRDE-------NNLQYRSD--- 451

Query: 474 RDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS--EDGKTS 531
           +DI    F     V +R+   +  G  + GR+F FLA+S S LR+ S WF     D K  
Sbjct: 452 KDIDDEEF-----VRRRLGHFMHEGLVIAGRRFRFLAYSQSALREHSVWFVKAFRDPKHG 506

Query: 532 VLDIKKW---MGRFT----DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRN-- 582
           +++  K    +G F     D+ +  C AR G   S  ++  +    EVD  L  IKR+  
Sbjct: 507 IVNAGKIIESLGNFRDLAYDRTLGYCPARFGARVSQAFSATDAAIVEVDEIL--IKRDIT 564

Query: 583 ----GYVFSDGIGKITPDLAMEVAQKL--KLDVNPPPCAYQIRYAGCKGVVACWPAKGDG 636
                Y F+DG G ++ DLA ++  ++  K D N  P AYQIR+ G KG+++        
Sbjct: 565 TPDGQYTFTDGSGDMSADLARDIWHRIARKRDRNDFPRAYQIRHEGSKGMISVDYRLNGS 624

Query: 637 IRMSLRESMNKFQSHHTT-LEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSML 694
             +SLR+SM KF +  +  +E+  +  +  P +LNR +I +L  L V  E+F   QD  +
Sbjct: 625 NTLSLRDSMIKFDAPESNEIEVSRAIDQPTPYYLNRFLIMILEGLGVKHEVFQGFQDEAV 684

Query: 695 SKLNQMLVDSDVAFEVLTAAC--------AEQGNTAAIMLSAGFNPQTEPHLRGMLTCIR 746
               Q +     A  +L A          +   N + + L    N   +P     L    
Sbjct: 685 RGTQQAMEHLSSASHLLQAHGLGLTFKIPSTMANLSKLDLD---NLVRDPLFDQPLRLGV 741

Query: 747 AAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETK 806
              L  L+ KARI +P    L+G  D  G L+  + F+ +  P  G+ +           
Sbjct: 742 YHVLRDLKYKARIPIPNAWTLVGVADTHGYLKADEVFVCIKHPEKGSFY----------- 790

Query: 807 KLQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL------HHLYDCLVFPQKGDRPHTNEA 860
               ++G V+I+++P +HPGD+++  A+  P          L + +VF  KGDRP  +  
Sbjct: 791 ----LEGPVLISRSPTIHPGDVQLAMAIGGPRQGSPFAREPLPNTVVFSVKGDRPLPSCL 846

Query: 861 SGSDLDGDLYFVTWDENLIP-------PSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFA 913
            G DLDGD Y      N+IP         +K++ P  Y AAE +    P   +D+ +F  
Sbjct: 847 GGGDLDGDPY------NIIPLRDHPYFTPEKTYEPANYEAAEKQLTEWPCTMKDVADFVM 900

Query: 914 KHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT---MPAHL 970
           +++V++ +G +    ++ AD  +    D++C++LA+L + AVD+PKTG+ V    +P   
Sbjct: 901 QYIVSDVIGVVATNWLIIADQRK-DITDDDCLVLAKLHSDAVDYPKTGRPVQQDHIPRPR 959

Query: 971 KPKLYPDFMGKEAYQS--------YKSNKILGRLYR 998
            PK  PD++  E  ++        Y+S   LG+L R
Sbjct: 960 NPK--PDWLAPETLENVLSQGGRYYESQTALGKLTR 993


>gi|392597024|gb|EIW86346.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
          Length = 1218

 Score =  224 bits (570), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 246/832 (29%), Positives = 369/832 (44%), Gaps = 116/832 (13%)

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475
            L+ TPT      P  + SN VLR++    + FLRV+F DE              AP+ RD
Sbjct: 430  LIFTPTTQILEGPLPDQSNSVLRRFGH-HECFLRVSFQDEN------------CAPLRRD 476

Query: 476  ITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS--EDGKTSVL 533
                 +S    +  R R     G  + GRKF FL +S S LR+ S WF +  ++ +   L
Sbjct: 477  F---EWSISELMKSRFRPKFLKGHRVAGRKFEFLGYSMSGLREHSVWFVAPFQNDRGEWL 533

Query: 534  D---IKKWMGRFTD--KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDI--KRNGYVF 586
            +   I+  +G F++  K  A+  AR  Q FS+T  +V +   E+   + DI   R+  V 
Sbjct: 534  NAAAIRNLLGDFSELLKRPARLGARWSQAFSTTDPSVVLRQEEIF-RVDDIISPRSKKVM 592

Query: 587  SDGIGKITPDLAMEVAQKLKLD------VNPPPCAYQIRYAGCKGVVACWPAKGDGIRMS 640
            +DG   I+PDLA  + +KL+ D      +  PP A+Q R  G KGVV   P   +G  + 
Sbjct: 593  TDGCSSISPDLARNIWEKLRTDRRQLSSLKNPPSAFQFRLGGAKGVVVQNP-DLEGKVVC 651

Query: 641  LRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLN----VPDEMFWSMQDSMLSK 696
            LR S  KF+    T ++ S +R +P +LNR +I LL  +     V   +     D M ++
Sbjct: 652  LRPSQLKFEGSELTFDVQSHSRSRPMYLNRPLIALLEHVAASGLVTRVLKLQHDDIMEAQ 711

Query: 697  -LNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQ--TEPHLRGM--------LTCI 745
             +     D+    EV       +  +    LS+  N    T    RG+        + CI
Sbjct: 712  GVRSSFKDASKMLEVHGLGAPFRLGSLFHNLSSELNLHVWTSETPRGLRNEIIIDAMRCI 771

Query: 746  RAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET 805
                L  L+ +A I VP    LMG  DE   L  G+ F  V              R   T
Sbjct: 772  STHALRELKYRAHIRVPGSYTLMGVSDEWDCLNPGEIFATV--------------RDYRT 817

Query: 806  KKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDL 865
                 I+G V + ++P +HPGDI++++AV  PEL HL + +VF  +GDRP  N   G DL
Sbjct: 818  GVYHAIEGPVAVTRSPQIHPGDIQVVKAVRRPELEHLTNVIVFSTRGDRPLPNYLGGGDL 877

Query: 866  DGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTIC 925
            DGD + +  DENL P   +   P  Y +   K         D+++F   +  ++ +G I 
Sbjct: 878  DGDDFNLILDENLFPTYNRI--PGSYVSLPIKETPHICGVEDVVDFIFDYFESDLVGLIS 935

Query: 926  NAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMP--AHLKPKLYPDFMGKEA 983
             AH+  AD  +  +  + C+ LAELA+ AVDFPKTG  V           + PDF+ KE 
Sbjct: 936  IAHLRFADLGDPDS--QECMTLAELASQAVDFPKTGTPVQFEDLPRFPDTIKPDFLAKEG 993

Query: 984  ---YQS---YKSNKILGRLYR------------QSKDAYDEDISVSSEVDINPVDIHYDT 1025
               +Q+   YKS K+LGRL+R            +S+  +D   S+ +  D  P++ +   
Sbjct: 994  EDPHQNSRFYKSPKLLGRLFRRIPLDDWMPEAGKSRSPFD-ITSILTAFDRIPLEDYGLP 1052

Query: 1026 DLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNR-------EEELVTGHI---WSMPK 1075
             L  P         W  + +Y  +L  + + + V+R       E ELV+G I   WS  +
Sbjct: 1053 PLGRPREDTLQEMQWLLE-AYCDELQIIAQAHTVSRNQEDFISEAELVSGTILANWSDHR 1111

Query: 1076 YNSRKQGELKERLKHSYSALRKEFRQVFEKMD-----------SDCELLSEDEKNALFER 1124
                    +  + ++  S LR   R   ++ D           S CE+  ED      E 
Sbjct: 1112 KRREAVNAMNLQTQNLTSRLRLALRPRRDETDTEDGESSTYYWSSCEIEEEDSSFMAAEA 1171

Query: 1125 KASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCRE 1176
               AW  V     WV + + LQE  S ++    SF  IA   +  I  R R+
Sbjct: 1172 FIRAWAAV-----WVAE-VSLQET-SGKAFGSQSFGLIALGRMLDIAKRERQ 1216


>gi|389746474|gb|EIM87654.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
          Length = 976

 Score =  223 bits (567), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 227/765 (29%), Positives = 347/765 (45%), Gaps = 115/765 (15%)

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475
            L++TPT      P  + SN VLR++    D F+RV+F DE               P+ RD
Sbjct: 183  LILTPTSKILEGPLPDQSNSVLRRFGH-HDCFIRVSFQDENH------------TPLRRD 229

Query: 476  ITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF----SEDGKTS 531
             +  S  +  R   R +S +  G  L GR F FL +S S LR+ S  F     S+DG   
Sbjct: 230  PSGTSIQELLRT--RYKSAMVKGIPLAGRHFEFLGYSMSGLREHSIIFMQAFESDDGSLM 287

Query: 532  VLD-IKKWMGRFT--DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSD 588
              D I+  +G F+      A  AAR  Q FS++  +V +   E+         +G +F+D
Sbjct: 288  TADRIRSLLGNFSHISNKPALLAARWAQAFSASDPSVTLQSAEIQRIGDKRSPSGSLFTD 347

Query: 589  GIGKITPDLAMEVAQKLK------LDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLR 642
            G G I+  LA +V + L+        +   P  +QIR  G KG++   P    G  + LR
Sbjct: 348  GCGTISESLARDVWKFLQRHRRRAASMRLVPSCFQIRIGGAKGILFQDP-NLIGKMVCLR 406

Query: 643  ESMNKFQ--SHHTTLEICSWTRFQP--GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN 698
             S  KF+  S   TL+I S T  +P   FLNR +I LL  L V  ++F ++Q      + 
Sbjct: 407  PSQTKFENDSEALTLDIAS-TSSRPIRMFLNRSLILLLEFLGVKPDVFMALQKDATDAVE 465

Query: 699  QMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQT------EPHLRGM----LT-CIRA 747
            +    +  +F       +  G  ++  +++ FN         E  L+G+    LT  I  
Sbjct: 466  R----ARHSFLEAAKLFSHHGFGSSFRIASLFNNLVTQLKLDEGDLQGLECQILTKSIEY 521

Query: 748  AQLWGLRE---KARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAE 804
            A    LRE   +ARI V     L+G  DE G L  G+ F  V +   G            
Sbjct: 522  AATHVLREIKFRARIPVHGSWTLLGVSDEWGCLREGEIFATVRDEHSGTSVE-------- 573

Query: 805  TKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSD 864
                  I+G ++I ++P +HPGD++++ AV  PEL HL + +VF  +G+R   +   G D
Sbjct: 574  ------IQGPMLITRSPQIHPGDVQMVTAVRRPELAHLTNVVVFSCEGERSLPSMLGGGD 627

Query: 865  LDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTI 924
            LDGD+Y +  D +L P    +     Y     K L R     D+ +F   ++  + +G I
Sbjct: 628  LDGDIYNLILDPDLFP--THTCEAGGYVGLPHKVLDRDCTIDDVADFVINYIEADLVGYI 685

Query: 925  CNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT---MP-AHLKPKLYPDFMG 980
               H+  AD S  G   ++C+LLAE A+ AVDFPKTG       +P A   PK  PDF+G
Sbjct: 686  AILHLRIADLSPEGPNSKDCLLLAEKASHAVDFPKTGTPTNFDDLPRAPRGPK--PDFLG 743

Query: 981  KEAYQS-----YKSNKILGRLYRQSK----DAYDEDISVSSEVDINPVD----------- 1020
             E         Y SNK+LGRL+R       DA D + SV     I+ +D           
Sbjct: 744  SETVDPSSSSFYPSNKVLGRLFRNVPLEIVDA-DHEGSVFGSTIIDALDRAARLGHVRLG 802

Query: 1021 ---IHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNR-------EEELVTGHI 1070
               IH  +D ++ E ++ + DA+++      QL  + + +  +R       E ELV+G I
Sbjct: 803  LPVIHGHSD-DLVEEMELMMDAYSE------QLMEIAKAHTQSRAPNAFLTEPELVSGTI 855

Query: 1071 ---WSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCEL 1112
               WS P+        ++ +      ++R+E R+     + D E+
Sbjct: 856  QGKWSNPRKRREAVNSMELQTHELTKSIRQELRRALIVDEPDDEM 900


>gi|336367253|gb|EGN95598.1| hypothetical protein SERLA73DRAFT_162413 [Serpula lacrymans var.
            lacrymans S7.3]
 gi|336379975|gb|EGO21129.1| hypothetical protein SERLADRAFT_417518 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1199

 Score =  223 bits (567), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 240/868 (27%), Positives = 393/868 (45%), Gaps = 97/868 (11%)

Query: 327  GISFEIMFLVNAVMHKGIINQHQLSD--SFFDLLRGQSREVNVAALKHI---YSYKWPVF 381
            G+ + + F V A++H G+++  +L D  +  D L  + R++    L++     + + P  
Sbjct: 324  GLDWLVAFQVEALLHNGLLSTVELDDLRAPIDRLVQEHRKLAGEILRYFTEALASRSPNE 383

Query: 382  DACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYK 441
               +   LV+   LK  +L   P+          +  TPT+     P +  SNRV+R Y+
Sbjct: 384  TPRQCFDLVRHSKLKS-KLRTSPQ---GRFFCHHVTFTPTRMLLEGPYIIQSNRVIRNYE 439

Query: 442  DLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYL 501
               D F+RV F DE       N          R++   +F +      RV  IL  GF L
Sbjct: 440  GYEDHFIRVDFRDEDRLNYRWN----------RELDALAFLEP-----RVGGILKNGFEL 484

Query: 502  CGRKFSFLAFSSSQLRDCSAWF---FSE--DGKTSVLDIKKWMGRFTDK--NIAKCAARM 554
             GR F FLA+SSS LR+ + WF   FS   +G  +   I+  +G F+    + +K AARM
Sbjct: 485  AGRDFEFLAYSSSALREHAVWFVNPFSHPTEGWVTSESIRSGLGDFSGVIFHPSKYAARM 544

Query: 555  GQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDL------AMEVAQKLKLD 608
             Q FS+T  +V++  ++   E+PD+      F+DG+G I+ +L      A+  A++   +
Sbjct: 545  AQAFSATDPSVKIHKSQWR-EIPDLGDETTCFTDGVGTISRELGDMIWGALCEARRDHGE 603

Query: 609  VNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKF---QSHHTTLEIC-SWTRFQ 664
                P AYQIR+ G KG+VA   A+  G++M LR SMNKF   ++ +  +EI  ++ R  
Sbjct: 604  HTIKPSAYQIRFLGYKGMVAI-DAQLTGVQMCLRPSMNKFLGKETEYAEIEIARAFERPN 662

Query: 665  PGFLNRQIITLLSTLNVPDEMFWSMQDSMLS----------KLNQMLVDSDVAFEVLTAA 714
               LNR ++ +L       + F  +QD +++          +   +L + ++      + 
Sbjct: 663  LPHLNRPLVMVLEDRGAKRDSFVKLQDEVIAETRMANDSIERFRSLLEEHNLGHNFRLSP 722

Query: 715  CAEQGNTAAIMLSAGFNPQT--EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLD 772
              +Q N   + L A    +    P L    +C     L  ++ +ARI +P    L+G  D
Sbjct: 723  ILQQLNALGLELKADQTKEAMDSPFLAQTRSCAINHVLRSVKHEARIQIPKSYMLVGVAD 782

Query: 773  E--LGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRI 830
            E    V  G      + E  +  C  K G       +   ++G  VI+++P +HPGD++ 
Sbjct: 783  EGPAYVNAGRDNVFCLPEGKIYACVQKPGD-----MEPIWLEGLCVISRSPVIHPGDVQR 837

Query: 831  LEAVDHPE------LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKK 884
            + A+  P         HL + +V P  G R   +   G DLDGDLY V      +     
Sbjct: 838  VYAIGKPPANKLCLFSHLKNVVVLPSVGARSLASCLGGGDLDGDLYEVIQHSPFLVTEHH 897

Query: 885  SWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENC 944
               P EY A    TL RP    D+ +F  +++ ++ +G + + H+V AD S++G LD+NC
Sbjct: 898  D--PAEYPAGSIFTLDRPSTIEDVCDFVVEYIHSDVVGLVSDKHIVIADQSKHGTLDQNC 955

Query: 945  ILLAELAATAVDFPKTG---KIVTMPAHLKPKLYPDFMGKEA-----YQSYKSNKILGRL 996
            + L+ L + AVD+PK G    I  +P  L P   PD+   E         Y+S++ LG L
Sbjct: 956  LKLSALHSQAVDYPKNGIKVDISFLPRSLIP-YKPDWHAAEVDSPRKTDYYESSRALGYL 1014

Query: 997  Y-------------RQSKDAYDEDISVSSEVDINPVDIHY-DTDLEVPESVDFIADAWNQ 1042
            Y             R+  +  D+ IS   +  +      Y D D E  E ++ I   +  
Sbjct: 1015 YRNITLEDLPTSVPRKPYEPLDDPISKVLKPRVKRQTPGYTDPDGESSE-METIFQTYRD 1073

Query: 1043 KCSYDGQLNGLLEQYKVN-REEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQ 1101
            + +Y    + L        RE+E+V G I S      R + +   R+K   S L  E R+
Sbjct: 1074 ELNYISVTHSLTNIPGARLREDEIVVGTILSKCS-QKRWRSDRMYRMKAHASFLAHETRR 1132

Query: 1102 VFEKMDSDCELLSEDEKNALFERKASAW 1129
                +D+  +    D + AL  R  +AW
Sbjct: 1133 DIRLLDTLEDASEGDIRKALL-RAWTAW 1159


>gi|403374620|gb|EJY87268.1| RNA-directed RNA polymerase [Oxytricha trifallax]
          Length = 1352

 Score =  223 bits (567), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 202/698 (28%), Positives = 306/698 (43%), Gaps = 161/698 (23%)

Query: 408  DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSY 467
            D+ +  RR+  TPT       + E +NRV+R++K   D F R+  +++ LQ  +      
Sbjct: 446  DNDLRQRRIYQTPTLTLFFANQREQTNRVIRQFKKYKDNFFRLVLVNDQLQKFH------ 499

Query: 468  FIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSED 527
                        S  QK  + + ++ ++    Y+       L +S+SQL++ S W     
Sbjct: 500  ----------FGSMKQK-EMLQHMKDLMKQELYIGDSLAQVLNYSNSQLKNHSVWMVCS- 547

Query: 528  GKTSVLDIK-----KWMGRFTDKN-IAKCAARMGQCFSST-YAT-------VEV-----P 568
              TS+ +I+       +G FT++    K  AR GQCFS+T Y T       VEV      
Sbjct: 548  --TSIPEIQPNAIISRLGTFTNEGGNLKMFARRGQCFSTTKYVTKLDPDSNVEVIEDIER 605

Query: 569  PTEVDPEL----PDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCK 624
            P + DP+L    PD +   YVF+DG G                              G K
Sbjct: 606  PKKNDPDLAQAEPDQREGNYVFTDGCG------------------------------GVK 635

Query: 625  GVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDE 684
            GV+   P   DG ++ LR+S  KF   +  LE+   + F  G+LNRQ+I LLS L V D 
Sbjct: 636  GVLMLKPDL-DGRKVQLRKSQIKFACENWGLEVIRCSTFSQGYLNRQVILLLSCLGVDDN 694

Query: 685  MFWSMQDSML----------------------------------SKLNQMLVDSDVAF-- 708
            +F S   + L                                  SK N+M  + DV F  
Sbjct: 695  VFLSHLHTALENLNVEKVIKNLYSRSTVFMTSKSKNRKDENENKSKANEMKNELDVFFGP 754

Query: 709  -------------------EVLTAACAEQGNTAAIMLSAG--FNPQTEPHLRGMLTCIRA 747
                               E +     E+  T  + LS    F  + EP    +L+ +  
Sbjct: 755  SKIFSPIFKHCLAQTLKQIEQVKKGLPEEMRTKDLHLSPKQVFFLENEPIFDSILSNMVL 814

Query: 748  AQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI----------QVSEPF------L 791
                 L++KARI +     L+G +DE G L+ G+ ++          Q+ E        +
Sbjct: 815  GLAVNLKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGSYDYDQIQEKLVDEYDEI 874

Query: 792  GNCFSKHGSRFAETKKL--QVIKGFVVIAKNPCLHPGDIRILEAV-DHPELHHLYDCLVF 848
             N   K  SR AE      Q+I+G V++ KNPC HPGDIR L AV +H    HL + +VF
Sbjct: 875  ENADGKK-SRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRAVGEHSTFEHLTNVIVF 933

Query: 849  PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRD- 907
              KG RP  ++ SG DLDGD+Y   WDE+L+   +K   P  Y   E    T    Q+D 
Sbjct: 934  SSKGCRPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEKPAVYKKFEESIKTDS--QKDT 991

Query: 908  IIEFFAKHMVNENLGTICNAHVVHADH-SEYGALDENCILLAELAATAVDFPKTGKIVTM 966
            I+++ A++   +NLG + + H+  +D     G  ++ C+ L+   + AVDF K GK V  
Sbjct: 992  IVDYMAEYFEKDNLGHLAHLHLGLSDQLGVEGPYNKECVELSWYISIAVDFAKHGKHVDK 1051

Query: 967  PAH--LKPKL--YPDFMGKE--AYQSYKSNKILGRLYR 998
              +  ++ KL  +PD+M K     ++ +S  ILG+LYR
Sbjct: 1052 DKYEMIEKKLDRWPDYMEKNDIGRKTVESPLILGQLYR 1089


>gi|403337310|gb|EJY67868.1| RNA-directed RNA polymerase [Oxytricha trifallax]
          Length = 1352

 Score =  222 bits (566), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 202/698 (28%), Positives = 306/698 (43%), Gaps = 161/698 (23%)

Query: 408  DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSY 467
            D+ +  RR+  TPT       + E +NRV+R++K   D F R+  +++ LQ  +      
Sbjct: 446  DNDLRQRRIYQTPTLTLFFANQREQTNRVIRQFKKYKDNFFRLVLVNDQLQKFH------ 499

Query: 468  FIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSED 527
                        S  QK  + + ++ ++    Y+       L +S+SQL++ S W     
Sbjct: 500  ----------FGSMKQK-EMLQHMKDLMKQELYIGDSLAQVLNYSNSQLKNHSVWMVCS- 547

Query: 528  GKTSVLDIK-----KWMGRFTDKN-IAKCAARMGQCFSST-YAT-------VEV-----P 568
              TS+ +I+       +G FT++    K  AR GQCFS+T Y T       VEV      
Sbjct: 548  --TSIPEIQPNAIISRLGTFTNEGGNLKMFARRGQCFSTTKYVTKLDPDSNVEVIEDIER 605

Query: 569  PTEVDPEL----PDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCK 624
            P + DP+L    PD +   YVF+DG G                              G K
Sbjct: 606  PKKNDPDLAQAEPDQREGNYVFTDGCG------------------------------GVK 635

Query: 625  GVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDE 684
            GV+   P   DG ++ LR+S  KF   +  LE+   + F  G+LNRQ+I LLS L V D 
Sbjct: 636  GVLMLKPDL-DGRKVQLRKSQIKFACENWGLEVIRCSTFSQGYLNRQVILLLSCLGVDDN 694

Query: 685  MFWSMQDSML----------------------------------SKLNQMLVDSDVAF-- 708
            +F S   + L                                  SK N+M  + DV F  
Sbjct: 695  VFLSHLHTALENLNVEKVIKNLYSRSTVFMTSKSKNRKDENENKSKANEMKNELDVFFGP 754

Query: 709  -------------------EVLTAACAEQGNTAAIMLSAG--FNPQTEPHLRGMLTCIRA 747
                               E +     E+  T  + LS    F  + EP    +L+ +  
Sbjct: 755  SKIFSPIFKHCLAQTLKQIEQVKKGLPEEMRTKDLHLSPKQVFFLENEPIFDSILSNMVL 814

Query: 748  AQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI----------QVSEPF------L 791
                 L++KARI +     L+G +DE G L+ G+ ++          Q+ E        +
Sbjct: 815  GLAVNLKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGSYDYDQIQEKLVDEYDEI 874

Query: 792  GNCFSKHGSRFAETKKL--QVIKGFVVIAKNPCLHPGDIRILEAV-DHPELHHLYDCLVF 848
             N   K  SR AE      Q+I+G V++ KNPC HPGDIR L AV +H    HL + +VF
Sbjct: 875  ENADGKK-SRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRAVGEHSTFEHLTNVIVF 933

Query: 849  PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRD- 907
              KG RP  ++ SG DLDGD+Y   WDE+L+   +K   P  Y   E    T    Q+D 
Sbjct: 934  SSKGCRPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEKPAVYKKFEESIKTDS--QKDT 991

Query: 908  IIEFFAKHMVNENLGTICNAHVVHADH-SEYGALDENCILLAELAATAVDFPKTGKIVTM 966
            I+++ A++   +NLG + + H+  +D     G  ++ C+ L+   + AVDF K GK V  
Sbjct: 992  IVDYMAEYFEKDNLGHLAHLHLGLSDQLGVEGPYNKECVELSWYISIAVDFAKHGKHVDK 1051

Query: 967  PAH--LKPKL--YPDFMGKE--AYQSYKSNKILGRLYR 998
              +  ++ KL  +PD+M K     ++ +S  ILG+LYR
Sbjct: 1052 DKYEMIEKKLDRWPDYMEKNDIGRKTVESPLILGQLYR 1089


>gi|409080815|gb|EKM81175.1| hypothetical protein AGABI1DRAFT_56593 [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 1176

 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 187/628 (29%), Positives = 295/628 (46%), Gaps = 84/628 (13%)

Query: 417 VITPTKAYCLPPEVELSNRVLRKY-KDLADRFLRVTFMDE-GLQTMNANVLSYFIAPIVR 474
           ++TPT      P  E SNRV+R+Y K   D FLRV F +E GLQ             + R
Sbjct: 403 MVTPTTILLTGPFPERSNRVIRRYGKRNEDNFLRVEFREEDGLQYR-----------LDR 451

Query: 475 DITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF-----SEDGK 529
           D+     + +  +  R+  IL     + GR F FLA+S S LR+ S WF      S+ G+
Sbjct: 452 DV-----NGRASLRHRISPILKEKIVIAGRSFDFLAYSQSALREHSVWFCRPFVDSDLGE 506

Query: 530 TSVLDIKKWMGRFT----DKNIAKCAARMGQCFSSTYATVEVPPTEVD-PEL-PDIKRNG 583
                I + +G F     DK +  C AR     S  +   E     V+ P++  DIK N 
Sbjct: 507 VDAARIIQDLGTFDNLSYDKELINCPARYAARLSQAFTATEAATFRVEEPQIRKDIKTND 566

Query: 584 --YVFSDGIGKITPDLAMEVAQKLKLDVNPP----PCAYQIRYAGCKGVVAC-WPAKGDG 636
             Y+F+DG G ++ D A E+ Q +           P AYQIRYAG KG+++  +  KG  
Sbjct: 567 KQYIFTDGCGCMSEDFAREIWQTMHPKGRDSEEDFPRAYQIRYAGSKGMLSVDYKLKGSR 626

Query: 637 IRMSLRESMNKFQSHHTT-LEICSWTRF-QPGFLNRQIITLLSTLNVPDEMFWSMQDSML 694
               +R SM KF +     +EI    +   P + NR +I LL  L V  ++    QD  +
Sbjct: 627 T-FVVRPSMIKFDAPEAKEIEIVRGIKNPTPYYFNRPLIMLLEGLGVNYDVLQHFQDKAV 685

Query: 695 SKLNQMLVDSDVAFEVLT----AACAEQGNTAAIMLSAGFNP-QTEPHLRGMLTCIRAAQ 749
           +K     +    A ++L      +   + +T   ++  G +  Q++     +L       
Sbjct: 686 AKTQDATLALQDAIDLLENHGLGSSFRRPSTMQNIIQLGIDALQSDAFYGRLLRVAVYHA 745

Query: 750 LWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQ 809
           L  L+  ARI +P    L+G  DE   L   + F          C  K         ++ 
Sbjct: 746 LRDLKNNARIPIPDAWTLVGVADEHNFLGKNEIFA---------CIKKSDG------EMI 790

Query: 810 VIKGFVVIAKNPCLHPGDIRILEAVDHP------ELHHLYDCLVFPQKGDRPHTNEASGS 863
            ++G V+++++PC+HPGD++++ A+  P      E+  L + +VF  KG+RP  +   G 
Sbjct: 791 YLEGHVLVSRSPCIHPGDVQVVSAIGRPPKGSCFEVESLQNTVVFSTKGNRPIPSCLGGG 850

Query: 864 DLDGDLYFVTWDENLIPPS-KKSWPPM------EYNAAEAKTLTRPVDQRDIIEFFAKHM 916
           DLDGD+Y      NL+P +  KS  P+      +Y + E K L +P   +D+ +F  +++
Sbjct: 851 DLDGDIY------NLLPLAVHKSLTPLRYFKPGKYTSGERKCLDKPSTMKDVADFVMEYI 904

Query: 917 VNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKL-Y 975
           +++ +G + N  +V AD S++G  D  C+ LA+L + AVD+PKTG  V++    K K   
Sbjct: 905 ISDVIGLVANRWLVIADQSQFGIQDRVCLRLAQLHSDAVDYPKTGNPVSVAEIPKLKFPL 964

Query: 976 PDFMGKEAYQS-----YKSNKILGRLYR 998
           PD+   E         Y S   +GRL R
Sbjct: 965 PDWSAPETVDPDPVNYYPSQSAVGRLSR 992


>gi|395332591|gb|EJF64970.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
          Length = 1236

 Score =  221 bits (564), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 188/648 (29%), Positives = 305/648 (47%), Gaps = 89/648 (13%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            V+    +ITPT+     P    SNRV+RKY    D FLRV F +E       N +S F  
Sbjct: 419  VQCAHAIITPTRVLLEGPYDTQSNRVIRKYYAYRDYFLRVEFREE-------NRMS-FRW 470

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS----- 525
            PI         + ++ + +R    L  G  + GR F FL +S+S LR+ + WF +     
Sbjct: 471  PI-------EVNGRSLIQQRFGKFLKQGLEIAGRTFRFLGYSTSGLREHTVWFMADFNHP 523

Query: 526  EDGKTSVLDIKKWMGRFTDKNI----AKCAARMGQCFSSTYATVEVPPTEVDPELPDIKR 581
            E+G  +   I+  +G FT K      +K AAR+ Q FS T  + ++   + +  +PD+  
Sbjct: 524  EEGPVTPEKIRNDLGDFTFKKSIRQPSKYAARIAQAFSGTDPSYKITIGQWEEGVPDLGT 583

Query: 582  NGYVFSDGIGKITPDLAMEV------AQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGD 635
            + Y F+DG G I+ +L   +      A   K  +   P A+QIR+ GCKG+V     + +
Sbjct: 584  DPYEFTDGQGTISVELRDRIWDVLCEASPDKRKLILKPSAFQIRFLGCKGIVVV-DEQLE 642

Query: 636  GIRMSLRESMNKFQSHH---TTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQD 691
            GI++ LR+SM KF   H     +EI  ++ +  P  L R +I +L    +  +   ++Q+
Sbjct: 643  GIKLRLRDSMKKFHVEHMREAEIEIAKAFIKPGPARLCRPLIAVLEDRGIHKQHLLALQE 702

Query: 692  SMLSKLNQMLVDSDVAFEVLTAACAEQ--GNTAAI------MLSAGFNP-QTEPHLRGML 742
                K  + +V++    E       +   GN   +      +  AG +  + +P  R ++
Sbjct: 703  ----KAKKKVVEARDTIEQTAGLLRDHDLGNVYGLRYILEHLRKAGVDTGKKKPRARHIM 758

Query: 743  ------TCIRAAQ---LWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVS-EPFLG 792
                    I  AQ   L  ++  ARI +     L+GC DE      G  +I    +P   
Sbjct: 759  DNEFIARLIDYAQTHILSEIKHDARIPIEEAHQLVGCADE------GPAYIAAGHDPEKV 812

Query: 793  NCFSKHGSRFA-----ETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE--------L 839
             C  K G  FA     ++ +   I+G V I+++P +HPGD++ + A+  P          
Sbjct: 813  ICL-KEGEIFACVQQPDSDEPIYIQGLVSISRSPHIHPGDVQRVRAIGKPPDDPDKVCFF 871

Query: 840  HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL 899
             +L + +V P  GDR   +  +G D+DGD + V  D  L+P +     P  Y   + + L
Sbjct: 872  RNLRNVVVMPSVGDRSLASMLAGGDVDGDEFLVIKDMTLLPTTLVE--PASYVGVKPEPL 929

Query: 900  TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
             R     DI +FF ++M ++ +G + + H+V AD S+YG  DE+C+ LA+L + AVD+PK
Sbjct: 930  DRDSTVDDICDFFMEYMQSDVVGLVADLHLVIADQSKYGTFDEDCMRLAQLCSQAVDYPK 989

Query: 960  TG---KIVTMPAHLKPKLYPDFMGKE-----AYQSYKSNKILGRLYRQ 999
             G    +  MP  L  +  PD+   E         Y+S + LG L+R 
Sbjct: 990  NGVPVNVENMPRKLI-RAKPDWKKPEDTDYRPADYYESTRALGELFRN 1036


>gi|426197730|gb|EKV47657.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
          Length = 1151

 Score =  220 bits (560), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 218/762 (28%), Positives = 346/762 (45%), Gaps = 114/762 (14%)

Query: 417  VITPTKAYCLPPEVELSNRVLRKY-KDLADRFLRVTFMDE-GLQTMNANVLSYFIAPIVR 474
            ++TPT      P  E SNRV+R+Y K   D FLRV F +E GLQ             + R
Sbjct: 378  MVTPTTILLTGPFPERSNRVIRRYGKRNEDNFLRVEFREEDGLQYR-----------LDR 426

Query: 475  DITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF-----SEDGK 529
            D+     + +  +  R+  IL     + GR F FLA+S S LR+ S WF      S+ G+
Sbjct: 427  DV-----NGRASLRHRISPILKEKIVIAGRSFDFLAYSQSALREHSVWFCRPFVDSDLGE 481

Query: 530  TSVLDIKKWMGRFT----DKNIAKCAARMGQCFSSTYATVEVPPTEVD-PEL-PDIKRNG 583
                 I + +G F     DK +  C AR     S  +   E     V+ P++  DIK N 
Sbjct: 482  VDAARIIQDLGTFDNLSYDKELINCPARYAARLSQAFTATEAATFRVEEPQIRKDIKTND 541

Query: 584  --YVFSDGIGKITPDLAMEVAQKLKLDVNPP----PCAYQIRYAGCKGVVAC-WPAKGDG 636
              Y+F+DG G ++ D A E+ Q +           P AYQIRYAG KG+++  +  KG  
Sbjct: 542  KQYIFTDGCGCMSEDFAREIWQTMHPKGRDSEEDFPRAYQIRYAGSKGMLSVDYKLKGSR 601

Query: 637  IRMSLRESMNKFQSHHTT-LEICSWTRF-QPGFLNRQIITLLSTLNVPDEMFWSMQDSML 694
               ++R SM KF +     +EI    +   P + NR +I LL  L V  ++    QD  +
Sbjct: 602  -SFAVRPSMIKFDAPEAKEIEIVRGIKNPTPYYFNRPLIMLLEGLGVNYDVLQHFQDKAV 660

Query: 695  SKLN---QMLVDSDVAFEVLTAACA-EQGNTAAIMLSAGFNP-QTEPHLRGMLTCIRAAQ 749
            +K     + L D+ +  E      +    +T   ++  G +  Q++     +L       
Sbjct: 661  AKTQDATRALQDAIILLENHGLGSSFRLASTMQNIIKLGIDALQSDAFYGRLLRVAVYHA 720

Query: 750  LWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQ 809
            L  L+  ARI +P    L+G  DE   L   + F          C  K         ++ 
Sbjct: 721  LRDLKNNARIPIPDAWTLVGVADEHNFLGKNEIFA---------CIKKSDG------EMI 765

Query: 810  VIKGFVVIAKNPCLHPGDIRILEAVDHP------ELHHLYDCLVFPQKGDRPHTNEASGS 863
             ++G V+++++PC+HPGD++++ A+  P      E+  L + +VF  KG RP  +   G 
Sbjct: 766  YLEGHVLVSRSPCIHPGDVQVVSAIGKPPKGSCFEVQSLQNTVVFSTKGIRPIPSCLGGG 825

Query: 864  DLDGDLYFVTWDENLIPPS-KKSWPPM------EYNAAEAKTLTRPVDQRDIIEFFAKHM 916
            DLDGD+Y      NL+P +  KS  P+      +Y + E K L +P   +D+ +F  +++
Sbjct: 826  DLDGDIY------NLLPLAVHKSLTPLRYFKPGKYTSGERKCLDKPSTMKDVADFVMEYI 879

Query: 917  VNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKL-Y 975
            +++ +G + N  +V AD S++G  D  C+ LA+L + AVD+PKTG  V++    K K   
Sbjct: 880  ISDVIGLVANRWLVIADQSQFGIQDRVCLRLAQLHSDAVDYPKTGNPVSVAEIPKLKFPL 939

Query: 976  PDFMGKEAYQS-----YKSNKILGRLYRQSKDAYDE---------DISVSSEVD-INPVD 1020
            PD+   E         Y S   +GRL R       E         D+S  S V  +NP  
Sbjct: 940  PDWSAPETVDPDPVNYYPSQSAVGRLSRAIDLRQHESSLPGHAPCDVSADSMVSTMNPRL 999

Query: 1021 IH--------YDTDLEVPESVDFIADAWNQ------KCSYDGQLNGLLEQYKVNREEELV 1066
            +         Y  DL+ P+ +  I D + +      + +Y+  LN      K   EEE++
Sbjct: 1000 VEAVRERISGYIDDLK-PDVL--IVDLFQRFSTRLLQIAYECNLNH--RNAKPLSEEEII 1054

Query: 1067 TGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDS 1108
             G I +      R + E   +L+ S   L ++ R+  E  +S
Sbjct: 1055 IGTI-TQKTPQPRMRKEKISKLRESTDVLVRQVREALEGDES 1095


>gi|392587026|gb|EIW76361.1| RdRP-domain-containing protein, partial [Coniophora puteana
            RWD-64-598 SS2]
          Length = 935

 Score =  219 bits (559), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 223/827 (26%), Positives = 357/827 (43%), Gaps = 133/827 (16%)

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475
            + ITPT+     P +  SNRV+RKY    D F+RV F +E  Q               R+
Sbjct: 146  VTITPTRMLLEGPYITQSNRVIRKYDQFKDHFIRVEFREENRQKYRWE----------RE 195

Query: 476  ITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDI 535
            + +  F     +  RV + L GG  + GR+FSF+A+S S LR+ S WF  E+G    + I
Sbjct: 196  VDVLEF-----LTSRVGAKLKGGVDVAGRRFSFVAYSPSALRNHSLWFVCEEGFRPPVQI 250

Query: 536  KKWMGRF--TDKNIAKCAARMG-----------------QCFSSTYATVEVPPTEVDPEL 576
             K +G F  T    AK AARMG                 Q FS+T  +++V   ++  E+
Sbjct: 251  LKELGNFSATTNQPAKRAARMGVSTNACYVPQCTKASFQQAFSATQPSIKVSKDQI-VEI 309

Query: 577  PDIK-------RNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVAC 629
            PDI        R  +VF+DGIG I+P L   + + L +   P   A+Q+R AG KGV   
Sbjct: 310  PDITGPHNNPARPPHVFTDGIGTISPKLRDRICEALSISTKPD--AFQVRCAGLKGVFVV 367

Query: 630  WPAKGDGIRMSLRESMNKF----QSHHTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDE 684
               + +G  M  R SM KF    +S    +EI  ++ +    FLNR ++ +L    V  E
Sbjct: 368  -DHQLEGKIMCPRPSMKKFLPLDESEDAEIEIVRAFDKPGRSFLNRPLVMVLEDRGVKTE 426

Query: 685  MFWSMQDSMLSKLNQMLVDSDVAFEVLTA----------ACAEQGNTAAIMLSAGFNPQT 734
             F  + +  ++         D    VL                +     ++L  G + ++
Sbjct: 427  GFLELFNDAVADARTAHDSVDQFVAVLQKHRLGIPYRLDQTLLKLKALGLVLRTGQDQES 486

Query: 735  --EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLG 792
                 L  +  C+    L  +R  ARI +P    L+G  DE      GQ +I   +    
Sbjct: 487  LDTDFLARVRLCVIKHILRDIRHSARIPIPGSYQLVGVADE------GQAYINAGKE--- 537

Query: 793  NCFS-KHGSRFA-----ETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP------ELH 840
            N F+ + G  +A        + Q ++G  VI+++P +HPGD++ + A+  P         
Sbjct: 538  NVFTLRQGQIYACIQDPSDAEPQWLQGTCVISRSPVVHPGDVQRVYAIGKPPENQLCAFA 597

Query: 841  HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLT 900
             L + +VF  +G  P  N   G   DG +  +   E +         P EY+A E  TL 
Sbjct: 598  RLKNVVVFASRGTLPLANCLGG---DGHVTRLFITEQV--------DPTEYDAREPYTLD 646

Query: 901  RPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKT 960
            RPV   DI +F  +++ ++ +G + + H++ AD S  G LD  C+ LA++ + AVD+ K 
Sbjct: 647  RPVTLDDICDFVVEYIHSDVVGLVADTHIIIADASSDGTLDRRCLELAKMHSQAVDYLKN 706

Query: 961  G---KIVTMPAHLKPKLYPDFMGKEAYQS-----YKSNKILGRLYRQS------------ 1000
            G    I  MP  L P   PD+   E   S     Y+SN+ LG +YR              
Sbjct: 707  GIPVDIRRMPRRLIP-FKPDWHEAEDESSHPCDYYRSNRALGHMYRTKLDEDRETLAHVE 765

Query: 1001 KDAYDEDISVSSEVDINPVDIHYDTDLE---VPESVDFIADAWNQKCSYDGQLNGLLEQY 1057
             D+Y + IS   +  +N   +   +  E   V   V+ I   +  +  Y    + L +  
Sbjct: 766  VDSYGDSISQVVQQRVNGYPLAQASHQEQRNVLRIVETIFKRYQDELRYICMTHSLTDAA 825

Query: 1058 -KVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSED 1116
                REEE++   I +       ++  L  R++   + L +E R+    +  D E+   +
Sbjct: 826  DDCLREEEVIASTILAKCSQKGWRKDRL-HRMRECATHLVQETRR---DLIGDLEVAPSE 881

Query: 1117 EKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIA 1163
            E      +  +AW Q          S++ + ++S       SF W+A
Sbjct: 882  EVRNGLHKAWAAWQQ----------SINHRAENSTELFGTQSFGWLA 918


>gi|392597023|gb|EIW86345.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
          Length = 1223

 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 203/657 (30%), Positives = 302/657 (45%), Gaps = 84/657 (12%)

Query: 387  LKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADR 446
            +K V+E LL    L   P   D   E   L+ TP+      P  + SN VLR++ +  + 
Sbjct: 409  VKAVKEELLAPRGLLTSPLARDGAYEAYHLIFTPSTYILDGPLPDQSNSVLRRFGN-HEC 467

Query: 447  FLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKF 506
            FLRV+F DE              AP+ RD     +S    + KR R I  GG  + GR +
Sbjct: 468  FLRVSFQDENR------------APLRRDF---EYSISELMQKRFRPIFLGGHKVAGRHY 512

Query: 507  SFLAFSSSQLRDCSAWF---FSEDGKTSVLD---IKKWMGRFTDKNI--AKCAARMGQCF 558
             FL +S S LR+ S WF   F+ D K   +D   I+  +G F++     A+  AR  Q F
Sbjct: 513  EFLGYSMSGLREHSVWFVTPFTSD-KGITMDAETIRGQLGDFSELQYKPARLGARWSQAF 571

Query: 559  SSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEV------AQKLKLDVNPP 612
            S+T  +V +   E+         +G   +DG   I+ +LA E+       ++    +  P
Sbjct: 572  STTDPSVTLERREIQYVNDITSASGNCMTDGCSSISIELAREIWTSLNRTRRRTFPLKFP 631

Query: 613  PCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHT-TLEICSWT-RFQPGFLNR 670
            P A+Q R  G KGVV   P   D + + LR+S  KF++ +  T ++ S T R +P FLNR
Sbjct: 632  PSAFQFRLGGAKGVVVQNPDLNDRV-VCLRKSQRKFEAPNVLTFDVQSHTARPRPMFLNR 690

Query: 671  QIITLLSTLNVPDEM--FWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSA 728
             +I +L  L   D M     +Q + + +   +      A ++L       G  A+  L++
Sbjct: 691  PLIAILEHLGEQDTMDRILELQHADIQEAQGVRSSFRDAAKMLQV----HGLGASFHLTS 746

Query: 729  GF-NPQTEPHLR----------------GMLTCIRAAQLWGLREKARIFVPAGRWLMGCL 771
             F N   E ++R                  L CI    L  L+ +A I VP    LMG  
Sbjct: 747  LFGNLAKELNMRVWTRESDDGWQNEVVIDALRCISTHALRELKYRAHIRVPGSYTLMGVS 806

Query: 772  DELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRIL 831
            DE   L  G+ F  V +  + N   K             I G V + ++P +HPGDI+++
Sbjct: 807  DEWNCLRPGEIFATVRD--IRNGLDKP------------IVGRVAVTRSPQIHPGDIQVV 852

Query: 832  EAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEY 891
             AV  PEL HL + +VF  +GDR   +   G DLDGD + +  DE L P +     P  Y
Sbjct: 853  TAVRRPELEHLTNVVVFSTQGDRALPSFLGGGDLDGDDFNLILDEALFPTANSE--PGSY 910

Query: 892  NAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELA 951
             +   K  T P    D+++F   +   + +G I   H+  AD  + G    +C+ LAELA
Sbjct: 911  VSLPIKETTHPCGIEDVVDFVFNYFETDLVGRIAIMHLRFADLEDPGC--ASCMTLAELA 968

Query: 952  ATAVDFPKTGKIV---TMPAHLKPKLYPDFMGKEAYQS------YKSNKILGRLYRQ 999
            A AVDFPKTG  V    +P     ++ PDF+ +E          Y+S K+LG L+R+
Sbjct: 969  AQAVDFPKTGTPVDFKLLPRLPDKEIKPDFLAREGENPHKNERFYESQKLLGELFRR 1025


>gi|392595557|gb|EIW84880.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
          Length = 1235

 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 212/751 (28%), Positives = 343/751 (45%), Gaps = 122/751 (16%)

Query: 326  EGISFEIMFLVNAVMHKGIINQHQLSDSF--FDLLRGQSREVNVAALKHIYSYKWPVFDA 383
            + + + I F V A++H G++N  ++       D +  QS+E+    ++            
Sbjct: 317  KSVHWSIAFQVAALLHNGVLNTQEVESILPVVDKMASQSQEIASEVMR------------ 364

Query: 384  CKRLKLVQEWLLKDPELYKGPKQIDDIV-------EVRRL------------VITPTKAY 424
                  +++   + P   + PKQ  ++V       EVRR+             ITPT+  
Sbjct: 365  ----SFIEKISTRPPS--QTPKQFLEVVRKSRSIDEVRRISSASGRFFCYHVTITPTRML 418

Query: 425  CLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQK 484
               P +  SNRV+RKY+   D FLRV F DE       +          R++   SF + 
Sbjct: 419  LEGPYITQSNRVIRKYEGFEDHFLRVEFRDEDRLQFRWD----------REVDGQSFLED 468

Query: 485  TRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD 544
                 RV  +L  G  + GR F+FLA+SSS LR  S WF +E+   S  +I+  +G F +
Sbjct: 469  -----RVGGMLKNGIDIAGRHFTFLAYSSSALRSHSVWFVNEEDFMSATNIRDSLGVFAE 523

Query: 545  K--NIAKCAARMG-----------------QCFSSTYATVEVPPTEVDPELPDIKR-NGY 584
                 +K AAR+G                 Q FS+T  +V++   +   E+ DIK   G 
Sbjct: 524  TIYQPSKYAARIGVSNGFLRFDLHMFNLPQQAFSATDPSVKISKDQWK-EIRDIKNAQGQ 582

Query: 585  VFSDGIGKITPDLAMEVAQKL---KLDVNPP---PCAYQIRYAGCKGVVACWPAKGDGIR 638
            +F+DG+G I+ +L   V +KL   + D       P AYQIR+ G KGVVA    + +GI 
Sbjct: 583  LFTDGVGTISRELGRMVWEKLCEARRDRGANSVIPSAYQIRFLGFKGVVAI-DEQLEGIM 641

Query: 639  MSLRESMNKF--QSHHTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLS 695
            +  R SM KF  Q+ H  +EI  ++ +     LNR ++ +L    V    F  + D  ++
Sbjct: 642  LCPRTSMRKFADQTEHAEIEIVRAFDKPNQPNLNRPLVMVLEDSGVDKGAFMELLDDAVA 701

Query: 696  ----------KLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQT--EPHLRGMLT 743
                      K   +L  + + F    A    + +   + L +  N ++     L  +  
Sbjct: 702  GARMAHDSVEKFVNVLRSNRLGFSYRLAHILLKLDALGLDLKSNSNQESLDTAFLARVRG 761

Query: 744  CIRAAQLWGLREKARIFVPAGRWLMGCLDE--LGVLEGGQCFIQVSEPFLGNCFSKHGSR 801
            C+    L  ++  ARI +P    L+G  DE    V +G +    +    +  C    G  
Sbjct: 762  CVINHVLRDIKHFARIPIPQSYQLVGVADEGPAYVKDGHENVYTLPPGKIFACIQNFGE- 820

Query: 802  FAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE------LHHLYDCLVFPQKGDRP 855
              E K L+   G  VI+++P +HPGD++ + AV  P         HL + +V P +G RP
Sbjct: 821  --EPKWLE---GPCVISRSPVVHPGDVQRVYAVGKPPANQLCLFEHLRNVVVLPSQGPRP 875

Query: 856  HTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKH 915
              N   G DLDGDLY +   + L+        P +Y   + +TL RP    D+ +F  ++
Sbjct: 876  LANCLGGGDLDGDLYEIIMFQRLLITEHSD--PAQYEDRKPRTLDRPSTIDDVCDFVVEY 933

Query: 916  MVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGK---IVTMPAHLKP 972
            + ++ +G I + H++ AD S+ G  D+ C+ LA+L + AVD+PK G    I  +P +L P
Sbjct: 934  IHSDVVGLISDKHIIIADQSKDGTRDDLCLKLADLHSQAVDYPKNGNPVDIRRLPRNLIP 993

Query: 973  KLYPDFMGKE-----AYQSYKSNKILGRLYR 998
               PD+   E     +   Y+S++ LG +YR
Sbjct: 994  -YKPDWHAAEVSSPRSLDYYESDRALGHMYR 1023


>gi|222629015|gb|EEE61147.1| hypothetical protein OsJ_15104 [Oryza sativa Japonica Group]
          Length = 335

 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/357 (38%), Positives = 193/357 (54%), Gaps = 38/357 (10%)

Query: 842  LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR 901
            + DCLVFPQ+G+RPH NE SG DLDGDLYF+TWD+ LIP  +K   PM+Y A   + +  
Sbjct: 1    MVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIP--EKVDTPMDYTATRPRIMDH 58

Query: 902  PVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
             V   +I + F  +M+N++LG I  AH++HAD S   A    C+ LA L + AVDF KTG
Sbjct: 59   VVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTG 118

Query: 962  KIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQS----KDAYDEDISVSSEVDIN 1017
                MP  L+P+ YPDFM +     Y SN +LG+LYR +    + + D     SS    +
Sbjct: 119  APAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPS 178

Query: 1018 PVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKY- 1076
            P    YD DLEVP S +F+  A      Y+ +L  L+  Y+   E+E++TG+I +   Y 
Sbjct: 179  PT---YDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYL 235

Query: 1077 --NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTY 1134
              ++++  E+K+R+  +  AL +E R           L S  E++A   R ASAWY+VTY
Sbjct: 236  KRDNKRYFEMKDRIVAAVDALHREARGWL--------LSSRKEEDA--SRMASAWYRVTY 285

Query: 1135 HPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK----IRCREMANIDTSKPVN 1187
            HP            D  R     SF WIA D L  IK    +R R   + D++  V 
Sbjct: 286  HP------------DRRRGKRFWSFPWIACDNLLAIKASSQLRRRRQKDDDSTAVVQ 330


>gi|389746475|gb|EIM87655.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
          Length = 1279

 Score =  217 bits (553), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 220/758 (29%), Positives = 342/758 (45%), Gaps = 101/758 (13%)

Query: 408  DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSY 467
            D I +   LV+TP       P ++ SN VLR++    D FLR++F DE            
Sbjct: 474  DAIFDSYTLVLTPLSRILEGPLLDQSNSVLRRFGH-HDCFLRLSFQDENH---------- 522

Query: 468  FIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS-- 525
               P+ RD T  + S    +  R RS++  G  + GR F FL +S S L+D S  F S  
Sbjct: 523  --TPLRRDPTSGT-SIAELLRTRFRSVMVDGIRIAGRYFQFLGYSMSGLKDHSIMFMSSF 579

Query: 526  --EDGKTSVLD-IKKWMGRFT--DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK 580
              E G+    + I++ +G F       A  AAR  Q FS++  +V + P E+     D +
Sbjct: 580  HDERGELMTAEGIRRTLGSFNHISNKPALLAARWSQAFSASDPSVTLDPNEI--RRIDDR 637

Query: 581  RN--GYVFSDGIGKITPDLAMEVAQKLK------LDVNPPPCAYQIRYAGCKGVVACWPA 632
            R+  G +F+DG G I+P LA +V + L+        +   P  +QIR  G KGV+   P 
Sbjct: 638  RSPSGSLFTDGCGTISPLLARDVWKFLQHRRRRAAKMRSVPSCFQIRIGGAKGVLFQDPT 697

Query: 633  -KGDGIRMSLRESMNKFQSHHT-TLEICSWTRFQP--GFLNRQIITLLSTLNVPDEMFWS 688
              G G  + LR S  KF++    TL+I S T  +P   FLNR +I LL  L V D++F S
Sbjct: 698  LAGLGRVVCLRPSQTKFENPEALTLDIAS-TSARPIRMFLNRPLILLLEFLGVQDDVFLS 756

Query: 689  MQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFN-----------PQTEPH 737
            +Q    + + +    +  +F       +  G  ++  L++ FN              E  
Sbjct: 757  LQKDATAAVER----ARDSFTDAAKLFSHHGFGSSFRLASLFNNLISELKLDDSDLQELG 812

Query: 738  LRGMLTCIRAAQLWGLRE---KARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNC 794
             + +   +  A    LRE   +ARI V     L+G  DE   L  G+ +  V        
Sbjct: 813  CQLITRTVEYAATHVLREIKFRARIPVHGSWTLLGVSDEWSCLREGEIYATV-------- 864

Query: 795  FSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDR 854
                  R   T     I+G V+I ++P +HPGD++ + AV HP+L HL + +VF  +GDR
Sbjct: 865  ------RDERTGTYVPIEGRVLITRSPQIHPGDVQFVNAVRHPKLEHLNNVVVFSCEGDR 918

Query: 855  PHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAK 914
               +   G DLDGD+Y +  + NL P   ++     Y     K    P    DI +F   
Sbjct: 919  SLPSMLGGGDLDGDIYNLILNPNLFP--TRTSVAGAYEPLPHKVTPHPCTIEDIADFVID 976

Query: 915  HMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKP-K 973
            ++  + +G I   H+  AD    G   + C+LLAE A+ AVDF KTG  V      +  +
Sbjct: 977  YIEADLVGYISILHLRIADLDPKGPSCDECLLLAEKASHAVDFQKTGTPVNFDNLPRAGR 1036

Query: 974  LYPDFMGKEAYQS------YKSNKILGRLYR----QSKDAYDEDISVSSEV--DINPVDI 1021
            L PDF+  E  +       Y S+K+LG LYR    +++DA  E+     ++   +  +  
Sbjct: 1037 LRPDFLAGEVVEPSAESSFYPSDKVLGVLYRNVPLKNEDAIHEESVFGIKIYESVTRIAR 1096

Query: 1022 HYDTDLEVPESVDFIADAWNQ----KCSYDGQLNGLLEQYKVNR-------EEELVTGHI 1070
              +    +P   D+  +  ++      +Y  QL  + + +  +R       E ELV+G I
Sbjct: 1097 RAEVRFGLPSIDDYPDELLDEMHATMMAYSEQLTEIAKAHTQSRVPGDYLTEPELVSGTI 1156

Query: 1071 ---WSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEK 1105
               W    ++ RK+ E    ++     L K  RQ F +
Sbjct: 1157 QGKW----HDHRKRRETVASMELQTRELSKSIRQEFRR 1190


>gi|403413304|emb|CCM00004.1| predicted protein [Fibroporia radiculosa]
          Length = 1503

 Score =  217 bits (553), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 191/633 (30%), Positives = 303/633 (47%), Gaps = 78/633 (12%)

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475
            +  TPT+     P V  SNRV+R+Y D  D FLRV F DE       + L Y  A   R+
Sbjct: 412  VTYTPTRMILEGPYVSQSNRVIRRYPDHQDHFLRVDFRDE-------DRLQYRWA---RE 461

Query: 476  ITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS-----EDGKT 530
            +  +S      +F RV  +L  GF L GR F FLA+S S LR+ + WF +     E+G  
Sbjct: 462  VDGSSL-----LFDRVGGVLRSGFELAGRYFEFLAYSQSALREHAVWFINPFYHPEEGHI 516

Query: 531  SVLDIKKWMGRFTD--KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSD 588
            +   I+  +G F+   +  +K AAR+ Q F++T  +V +   + + E+PD+    Y F+D
Sbjct: 517  TAQTIRDSLGDFSGVIRQPSKYAARLAQAFTATDPSVRITRGQWE-EMPDLGEKPYEFTD 575

Query: 589  GIGKITPDL------AMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLR 642
            G+G I+ +L      A+  ++         P AYQIR+ G KG+V     +  GI+M LR
Sbjct: 576  GVGTISTELGNLIWDALCASRPENRRRGLKPSAYQIRFLGYKGMVVI-DEQLQGIKMHLR 634

Query: 643  ESMNKFQSHHTTLEICSWTRF--QPG--FLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN 698
             SMNKF++H   L      R   +PG  +LNR +I +L    V  + F ++Q+   + + 
Sbjct: 635  PSMNKFRAHDDDLAEIEIARAFERPGTSYLNRPLIMILEDRGVDKKAFINLQERAKTDIY 694

Query: 699  QMLVDSDVAFEVLTAACAEQGNTAAIMLSA------GFNPQ------TEPHLRGMLTCIR 746
                    +  +L A    +      +L +      GF  +       +P +  ++   +
Sbjct: 695  TASDSITKSVSMLKAHTLGKSYGLDFILQSLQNIGMGFKHEKSIHVLQDPFIERLIHYSK 754

Query: 747  AAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFS-KHGSRFA-- 803
               L  ++  ARI +P    L+G  DE      G  ++      + N F  K G  FA  
Sbjct: 755  NHVLRDIKHGARIPIPDSYLLVGVADE------GPAYVHAG---MENVFCLKKGEIFACV 805

Query: 804  ---ETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE------LHHLYDCLVFPQKGDR 854
               +  +   +KG VVI+++P +HPGD++ + A+  P         +L + +V P  G R
Sbjct: 806  QNADDPEPTYLKGSVVISRSPVVHPGDVQRVWAIGSPPPDKVCFFRNLKNVVVLPSAGGR 865

Query: 855  PHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAK 914
               +   G DLDGDLY +     L+P   +   P  Y +A  +TL R     DI +F  +
Sbjct: 866  SLASCLGGGDLDGDLYSIIKHGPLLPTEHED--PASYLSAGTRTLDRDSTIADICDFVVE 923

Query: 915  HMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTM---PAHLK 971
            ++ ++ LG + + H++ AD S++G  D  C+ LAEL + AVD+PK G  V +   P  L 
Sbjct: 924  YLNSDVLGLLSDRHLIIADQSKHGTNDTKCLSLAELCSQAVDYPKNGIPVDIHDSPHWLI 983

Query: 972  PKLYPDFMGKE-----AYQSYKSNKILGRLYRQ 999
            P   PD+   E         Y+S++ LG L+R 
Sbjct: 984  P-YKPDWHQAEDAAPRHTDYYESHRALGDLFRN 1015


>gi|302682738|ref|XP_003031050.1| hypothetical protein SCHCODRAFT_235575 [Schizophyllum commune H4-8]
 gi|300104742|gb|EFI96147.1| hypothetical protein SCHCODRAFT_235575 [Schizophyllum commune H4-8]
          Length = 1178

 Score =  216 bits (551), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 197/677 (29%), Positives = 310/677 (45%), Gaps = 98/677 (14%)

Query: 378 WPVFDACKRLKLVQEWLLKDPELYKGPKQIDD--------IVEVRRLVITPTKAYCLPPE 429
           W  ++A   L  V E   +  + ++  KQ++D        I +   L++TPT+     P 
Sbjct: 346 WIHYEADDDLMSVDECFARAAKDFE-EKQLNDDIYPADASIFQSLHLIVTPTRMIFQGPF 404

Query: 430 VELSNRVLRKY-KDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVF 488
            E SNR++R Y     D FLRV+F DE       + L Y      RD+  +S      V 
Sbjct: 405 PERSNRIIRSYDAKHHDSFLRVSFTDE-------DKLHYRFD---RDVDGSSM-----VR 449

Query: 489 KRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE--------DGKTSVLDIKKWMG 540
            R+   L  G  L G KF FLA+S S L++ + +F           +  T +  I  + G
Sbjct: 450 SRIERFLKNGICLAGHKFDFLAYSQSALKEHTVYFVKPFWVGIREVNAATIIAGIGNFEG 509

Query: 541 RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDP----ELPDIKRNGYVFSDGIGKITPD 596
                  A+ AAR+ Q F++T A+V V   EV P      PD     Y F+DG+G ++  
Sbjct: 510 SEDRFCPARYAARLSQAFTATDASVIVEAEEVFPVNDISTPD---GAYHFTDGVGTMSKG 566

Query: 597 LAMEVAQKLKL------DVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQS 650
           +A E   +L+            P A+QIR+ G KG+++   A   G  + LR SM KF+S
Sbjct: 567 MASETWAELQRWRKRTKKTKNVPAAFQIRFMGSKGMLSVDHAL-HGREVCLRHSMIKFES 625

Query: 651 HHTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN---QMLVDSDV 706
              TLEI  ++ R    +LNR +I ++  L VP E F   Q++ +  ++   + L     
Sbjct: 626 SSDTLEIARAFDRPGRYYLNRPLIMVMEGLGVPYESFLRHQEAAVQNVHSSSESLAKCAK 685

Query: 707 AFEVLTAACAEQGNTAAIMLSAGFNPQT---EPHLRGMLTCIRAAQLWGLREKARIFVPA 763
            FE      A +  +  + L    N +        R M+       L  L+ +ARI +P 
Sbjct: 686 MFESFGLGTAFRVPSLLLNLEKLCNVKNLDANVFYRQMIEFATHHVLRELKNRARIPIPG 745

Query: 764 GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCL 823
              L+G  D    L  G+ F+         C   H     ++ ++  ++G V+I+++P +
Sbjct: 746 AYTLVGVADVHRYLGPGEIFV---------CIRPH-----DSNEVTYLEGDVLISRSPTI 791

Query: 824 HPGDIRILEAVDHPELHH------LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEN 877
           HPGD++++ A+  P+         L + +VF  +G RP      G DLDGD Y      N
Sbjct: 792 HPGDVQVVRAIGRPKAGSPFAKEPLANTVVFSVRGTRPLPTMLGGGDLDGDEY------N 845

Query: 878 LIPPSK-------KSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVV 930
           LIP +        ++     Y  A  KTLTR  D RD+ +F    +  + LG +    ++
Sbjct: 846 LIPLNSHPEFRPARTVEAASYAPAPRKTLTRAADMRDVADFVIDFINYDVLGIVAIHWLI 905

Query: 931 HADHSEYGALDENCILLAELAATAVDFPKTGKIVTM---PA-HLKPKLYPDFMGKEAYQS 986
            AD S     DE+C+ L++L + AVDF K+G+ V +   PA H + K  PD+   E  ++
Sbjct: 906 IADQSNKSIFDEDCLTLSQLHSDAVDFQKSGQPVALDRIPALHFRAK--PDWNAPETVKA 963

Query: 987 -----YKSNKILGRLYR 998
                YKS + +GRL R
Sbjct: 964 NSARYYKSQRAIGRLAR 980


>gi|260793153|ref|XP_002591577.1| hypothetical protein BRAFLDRAFT_105111 [Branchiostoma floridae]
 gi|229276785|gb|EEN47588.1| hypothetical protein BRAFLDRAFT_105111 [Branchiostoma floridae]
          Length = 3516

 Score =  216 bits (549), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 192/597 (32%), Positives = 279/597 (46%), Gaps = 69/597 (11%)

Query: 491  VRSILSGGFYLC-----GRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD- 544
            V ++L  GF +       R + F   S+SQLR+ +   + +        +    G F   
Sbjct: 108  VSAVLRSGFKVTVGKGQRRHYVFFGHSASQLRERTCILYDQGVLGPWERLVNGFGEFEAI 167

Query: 545  KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQK 604
            KN +K AAR+G   S+    +E+   E+D    DI+R+G+ F+DG G I+   A ++ Q 
Sbjct: 168  KNPSKRAARIGLLLSTATKCLELDEKEID-HTSDIERDGFTFTDGCGFISVACARKIMQD 226

Query: 605  LKLD-----VNPP-PCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQ---SHHTTL 655
              +       +PP P   Q R  GCKGVV   P+  +G+   +R S  KF+         
Sbjct: 227  KDISERYRHQDPPVPSVIQFRMKGCKGVVMTDPSLPNGV--CIRPSQEKFKWKLPPPHVF 284

Query: 656  EICSWTRFQP---GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT 712
             +C     QP   G LN+Q I +LS L + DE+F S Q++   +L+ +  D +VAF  L 
Sbjct: 285  GVCDDGISQPYAFGQLNKQYIMMLSALGIKDEVFLSKQETYFKELDCLETDKEVAFRHLC 344

Query: 713  AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIR----AAQLWGLR----EKAR---IFV 761
            A               G + +T   LRG  + +R    A +L  L     E AR   I +
Sbjct: 345  ARGYIGLAERLFSREGGPDNETLEILRGFRSRVRRPPKANKLHKLLNTKPEPARALKIPI 404

Query: 762  PAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNP 821
               R + G  D  G LE GQCF Q +              FA+TK        V + K P
Sbjct: 405  EKSRNVFGVCDPSGTLEPGQCFFQAT-------VRGKMQVFADTK--------VAVVKCP 449

Query: 822  CLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
            C HPGD R+L+ V+  +  HL DC+VFP +G+RPH +E +GSDLDGD +FV WD +L+P 
Sbjct: 450  CYHPGDFRVLQCVNVEDCRHLVDCVVFPVQGERPHADEIAGSDLDGDKFFVCWDPDLVPE 509

Query: 882  SKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEY-GAL 940
             +++  P+ Y   EA    R V   D+I  FA    N N  T+   + +    ++  G  
Sbjct: 510  CEEA--PLSYPGGEAAKKER-VSIGDLISVFA----NYNSRTVSRLNELFNRWADVKGVT 562

Query: 941  DENCILLAELAATAVDFPKTGKIVTMPAH-LKPKLYPDFMGKEAYQSYKSNKILGR--LY 997
               C  +A+L +TAVD  KTGK V +P   LKP   PD   K     Y   K+L R  LY
Sbjct: 563  SSECRKIAKLFSTAVDTAKTGKGVDIPPRLLKP---PDAQEKR----YVWQKMLERANLY 615

Query: 998  RQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDF-IADAWNQKCSYDGQLNGL 1053
                 A D D++V    + +  D+  + D+ V E   F     W   C  +G+L  L
Sbjct: 616  LADSVAADSDLTVRVFEEADITDLLNNKDINVSEYQLFRFLYKW---CESNGRLQDL 669


>gi|353235420|emb|CCA67433.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora
           indica DSM 11827]
          Length = 1169

 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 185/634 (29%), Positives = 298/634 (47%), Gaps = 84/634 (13%)

Query: 410 IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
           + E  R  +TP+      P  + +NRV+RKY+     F+RV F +E    +         
Sbjct: 380 VFECHRATVTPSSVVLTGPLPDETNRVIRKYRAYGHNFIRVDFTEEDRLHLRKE------ 433

Query: 470 APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS---- 525
               +++ L +      +  R+   +  G  + GRKF  LA+SSS L++ + WF +    
Sbjct: 434 ----KNVDLTAI-----LDDRIGEFMKNGLSVAGRKFELLAYSSSALKEHAVWFMTPFTT 484

Query: 526 EDGK-TSVLDIKKWMGRFTDKNI---AKCAARMGQCFSSTYATVEVPPTEVDPELPDIKR 581
            DG+  +   I++ +G F+ K I   A+  AR+ Q FSST  ++ V   E+   +PD + 
Sbjct: 485 SDGQYITSESIRRSLGDFS-KVIYCPARYGARLSQAFSSTEPSITVRVDEIR-FIPDKES 542

Query: 582 N-GYVFSDGIGKITPDLAMEVAQKLKLDVNPP-------PCAYQIRYAGCKGVVACWPAK 633
           + G +++DG+G I+P  A E+  K     +         P A+QIR  G KG++ C   +
Sbjct: 543 DYGSLYTDGVGTISPQAAKEIWHKYTESRSKRNRRRLKRPSAFQIRLGGLKGML-CVDNR 601

Query: 634 GDGIRMSLRESMNKFQSHHTTLEICS-WTRFQPGFLNRQIITLLSTLN-VPDEMFWSMQD 691
             G  + +RESMNKF S    +EI   + R    FLNR +I LL TL  VP E F ++Q 
Sbjct: 602 LRGRVICVRESMNKFHSDDREVEIARVFDRPMAMFLNRPLIMLLETLKKVPLEPFMALQT 661

Query: 692 SMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGF---------------NPQTEP 736
             + +    +   D A  +L       G   A  L++ F               +    P
Sbjct: 662 KAVEETRDAMKSFDAAARILE----RYGLGTAFRLTSVFLQLHKLGVSLALKDRSQGLLP 717

Query: 737 HLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFS 796
            L  ML  +    L  L+ KARI VP    L+G  DE   L   + + +V          
Sbjct: 718 FLGRMLQFVENHILRDLKYKARIPVPNAWTLVGVSDEYDYLGENEIYARV---------- 767

Query: 797 KHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE------LHHLYDCLVFPQ 850
               R  + ++ Q ++G V+I+++P +HPGD R++ A+  P       L  L +C+VFP 
Sbjct: 768 ----RTIDGEE-QYLEGPVMISRSPTVHPGDARMVWAIGKPSRGAPPGLEELTNCVVFPC 822

Query: 851 KGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIE 910
           KG        +G DLDGDLY +  D  L    +  +   +Y+  +  TL RP   +D+ +
Sbjct: 823 KGHPSLPQCLAGGDLDGDLYCLVLDPQL--HFRWQFQHGDYDPPQLVTLDRPSTIKDVAQ 880

Query: 911 FFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMP--A 968
           F   ++ N+ LG I    ++ AD  +    D +C+ LA+L + AVD+PKTG+ V      
Sbjct: 881 FVVNYIKNDLLGIISMQCMLIADVRKDCLADPDCVKLAKLHSIAVDYPKTGRHVESSEIP 940

Query: 969 HLKPKLYPDFMGKEAYQS----YKSNKILGRLYR 998
            L  +  PD+   E + +    Y+S + +G L+R
Sbjct: 941 WLDSRRRPDWYANELHNNNPDLYQSQRHIGHLFR 974


>gi|390597813|gb|EIN07212.1| RdRP-domain-containing protein [Punctularia strigosozonata HHB-11173
            SS5]
          Length = 1217

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 193/650 (29%), Positives = 292/650 (44%), Gaps = 92/650 (14%)

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDE-GLQTMNANVLSYFIAPIVR 474
            +   P++     P     NRV+R+Y    + F+RV F +E GLQ               R
Sbjct: 409  ITFCPSRMILEGPFPTQGNRVIREYSGYEEHFVRVDFREEDGLQYRWD-----------R 457

Query: 475  DITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS-----EDGK 529
            ++   SF     + +RV  IL  GF L GR F FLA+SSS L+  + WF       E G 
Sbjct: 458  EVDCRSF-----LAERVGRILKEGFELAGRHFQFLAYSSSALKQHAVWFVHPFEHHEKGS 512

Query: 530  TSVLDIKKWMGRFT---DKN--------------IAKCAARMGQCFSSTYATVEVPPTEV 572
                 I+  +G F+   D N               +K AARM Q F++T  +V +   + 
Sbjct: 513  VDAYIIRDRLGDFSGAIDNNNETRDAKTIQLRMQPSKYAARMAQAFTATDPSVRINEDQW 572

Query: 573  DPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLD------VNPPPCAYQIRYAGCKGV 626
              E+PD+ +  ++ +DG G I+  LA  +   L  D          P  YQIR+ G KG+
Sbjct: 573  Q-EIPDLGKEPHLHTDGCGTISRKLADMIWAALCKDRPYFQACKSSPDCYQIRFLGYKGI 631

Query: 627  VACWPAKGDGIRMSLRESMNKFQSHHT---TLEICS--WTRFQPGFLNRQIITLLSTLNV 681
            V       +G +M LR SMNKF++H T    +EI    W   Q   LNR +I +L    V
Sbjct: 632  VTV-DETLEGEQMCLRPSMNKFRAHKTPSAEIEIAKPFWKPTQVN-LNRALIMILEDRGV 689

Query: 682  PDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIML------SAGFN---- 731
              + F  +QD  +  +N      D    +L+   A  G+   ++         GF+    
Sbjct: 690  SWKCFMKLQDEAVRDINTASFSIDNFVRMLSDRGAGLGSNYRLLYIMRNLAELGFDFKQR 749

Query: 732  ----PQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE--GGQCFIQ 785
                P + P +  ++  IR   L  ++  A I +     L G  DE    E  G Q   +
Sbjct: 750  LRVQPLSHPFILRLVEFIRHHLLREIKHGASIPLRDAYLLPGVADEGPAYEARGHQNVFK 809

Query: 786  VSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE------L 839
            ++E  +  C    G    E K L   KG  VI ++P +HPGDI+ + A+  P        
Sbjct: 810  LAENRIFACV--QGPDDVEPKWL---KGNCVIWRSPVVHPGDIQRVYAIGKPPEDQLCFF 864

Query: 840  HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL 899
              L + +V P  G+R   +   G DLDGD Y V+    L+P  ++  PP EY   E  TL
Sbjct: 865  SRLKNVVVLPSVGERSLASCLGGGDLDGDEYCVSMLPTLLPTEQQ--PPAEYPPVETLTL 922

Query: 900  TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
             RP +  DI +F  +++ ++ LG + + H+V AD S+ G  DE C+ LAEL + AVD+ K
Sbjct: 923  DRPAEIDDICDFIVEYVHSDVLGLLSDKHLVIADQSKDGVRDEKCLRLAELCSQAVDYAK 982

Query: 960  TGKIVTMPAHLKP-----KLYPDFMGKE-----AYQSYKSNKILGRLYRQ 999
             G  + +    +         PD+   E     +   Y+S++ LG LYR+
Sbjct: 983  NGIAINLAKEKRAMKQLIPFKPDWHAAEIISPRSTDYYESSRALGHLYRE 1032


>gi|409045817|gb|EKM55297.1| hypothetical protein PHACADRAFT_173398 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1215

 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 191/632 (30%), Positives = 304/632 (48%), Gaps = 74/632 (11%)

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475
            + ITPT+     P V  SNRV+R+Y+   D F+R+ F DE       + L Y      RD
Sbjct: 413  VTITPTRMLLEGPYVIQSNRVIRQYRGYEDHFIRIDFRDE-------DRLQYRWD---RD 462

Query: 476  ITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS-----EDGKT 530
                S  +      RV  +L GGF L  RKF FLA+SSS LR+ + WF +     E G  
Sbjct: 463  TDGKSLLEN-----RVGGLLKGGFSLATRKFEFLAYSSSALREHAVWFVNPFYHQEKGWI 517

Query: 531  SVLDIKKWMGRFTD--KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSD 588
                I+  +G F+      +K AAR+ Q F++T  +VE+   + + ++ D+    Y+F+D
Sbjct: 518  DAEYIRSSLGDFSAVINCPSKYAARIAQAFTATDPSVEITRDQWE-QMDDLGEEPYLFTD 576

Query: 589  GIGKITPDL------AMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLR 642
            G+G I+ +L      A+  A+      N  P AYQIR+ G KG+VA    +  G++M LR
Sbjct: 577  GVGTISSELGDMIWEALCSARDDSYRKNIKPSAYQIRFLGYKGMVAV-DGRLKGVKMRLR 635

Query: 643  ESMNKFQS---HHTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN 698
             SMNKF+       T+EI  ++ R    +LNR +I +L    V  + F  +Q++ ++ ++
Sbjct: 636  PSMNKFEGPAEETATIEIARAFERPNTCYLNRPLIMVLEDRGVIKQAFLELQEAAVAAIH 695

Query: 699  QMLVDSDVAFEVLTAACAEQGN-----TAAIMLSAGFNPQTEPHLRGMLT------CIRA 747
             M  DS +    L    +  G+        ++ + G   + E ++R +L        ++ 
Sbjct: 696  -MSSDSVMQCRQLFREHSLGGSYRLSYVWQLLNAVGLGMEHEENIRVVLQDPFFERLVQF 754

Query: 748  AQ---LWGLREKARIFVPAGRWLMGCLDELGVLEGGQC--FIQVSEPFLGNCFSKHGSRF 802
            A+   L  ++  ARI V     L+G  DE    E   C    ++ E  +  C  K     
Sbjct: 755  AKNDVLRSIKHNARIPVLGSYLLVGVADEGPAYEAEGCENVFKLEEGQIYACVQK----- 809

Query: 803  AETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE-------LHHLYDCLVFPQKGDRP 855
            +  ++L  I+G V I+++P +HPGD++ + A+  P          +L + +V P  G R 
Sbjct: 810  SVDEELIWIEGSVTISRSPVVHPGDVQRVTAIGKPPDDGRPCFFRNLKNVVVLPSTGGRS 869

Query: 856  HTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKH 915
              +   G DLDGDLY + W+  L+P   +   P +Y     + L RP    DI +F  ++
Sbjct: 870  LASMLGGGDLDGDLYSIIWESTLLPTEHQG--PAKYEPVGKRELDRPSRIEDICDFIIEY 927

Query: 916  MVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG---KIVTMPAHLKP 972
            + ++ LG + + H++ A     G  D  CI LAEL + AVD+PK G    I   P  L P
Sbjct: 928  IDSDVLGLLSDRHLIIAGELREGTRDAKCIRLAELCSQAVDYPKNGVPVDIQNSPRWLIP 987

Query: 973  KLYPDFMGKE-----AYQSYKSNKILGRLYRQ 999
               PD+   E         Y+S++ LG L+R 
Sbjct: 988  -YKPDWKKAEDNAPRKTDYYESDRALGDLFRN 1018


>gi|342319755|gb|EGU11702.1| RNA-directed RNA polymerase 2 [Rhodotorula glutinis ATCC 204091]
          Length = 1904

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 184/623 (29%), Positives = 291/623 (46%), Gaps = 82/623 (13%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDE---GLQTMNANVLSYFI 469
            VR++  T T+A    P +  +N ++R Y    + F+ V    E    L+  + ++++   
Sbjct: 1106 VRQVTFTATRALLFGPYLGDTNSIVRAYA-RPELFVSVAVRHEDGSSLRDRDDSLIASRF 1164

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE--- 526
            +P+ RD                      GF L GR + FLA+SSS L+  S +F S    
Sbjct: 1165 SPLFRD----------------------GFELGGRSWRFLAWSSSGLKSSSCFFMSPFRL 1202

Query: 527  DGKTSVLD--IKKWMGRFTDKNIA----KCAARMGQCFSSTYATVEVPPTEV----DPEL 576
            D +T +    I + +G FT    A    K  AR+ Q FSS+  ++ + P ++    D   
Sbjct: 1203 DDETLITPTFIHRTIGDFTGSETALIPAKYMARIAQAFSSSKPSLTLRPDQMLSIEDITA 1262

Query: 577  PDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNP---PPCAYQIRYAGCKGVVACWPAK 633
            PD    G  FSDG+G I+P LA +V +KL + +     PP  +Q R  G KG +   P  
Sbjct: 1263 PD----GSCFSDGVGLISPSLANDVVEKLGIKLGKEERPPTCFQFRLGGAKGTLQVDPTL 1318

Query: 634  GDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSM 693
             +G  ++LR S  KF+S  T+LEI       PG+LNR +ITLL  L +P ++F  +Q   
Sbjct: 1319 -EGKVVALRPSQVKFRSTLTSLEIAGTFEAGPGYLNRPLITLLENLGIPADVFLKLQAKA 1377

Query: 694  LSKLNQMLVDSDVAFEVLTAACAEQGN--TAAIMLSAGFNPQTEPHLRG--MLTCIRAAQ 749
             +K+ +       A ++        G    +A+ L A      +       +  C+ A+ 
Sbjct: 1378 TAKIRKSRASLPSAVKLPRDWSLASGTRFVSALNLLAKDQATRDAAFANPFVARCLDASV 1437

Query: 750  LWGLRE---KARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETK 806
            +  LR+    ARI +P    L+G +D  G L   + + ++S P         GS      
Sbjct: 1438 VHALRDIKYLARIPLPGCYNLVGVVDVDGCLAQDEIYARISRP--------DGS------ 1483

Query: 807  KLQVIKGFVVIAKNPCLHPGDIRILEAVDH------PELHHLYDCLVFPQKGDRPHTNEA 860
              + ++G + I+++P  HPGD R++ AV          +  L +C+VFP  G R   +  
Sbjct: 1484 -TEYLQGTIAISRSPTNHPGDCRLVRAVGKLPKGAGERIRGLTNCVVFPVHGPRSLPSML 1542

Query: 861  SGSDLDGDLYFV-TWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNE 919
            +G DLDGD+Y + T    L+P   +   P  Y+AA    L R V   D  EFF K++  +
Sbjct: 1543 AGGDLDGDVYLLLTEASGLVPSPDRIAEPAAYDAAPTVKLDREVSVEDGGEFFFKYITQD 1602

Query: 920  NLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKL----Y 975
              G +    ++ AD    G    +C+ LA+L +  VD  K+G  V    H  P++     
Sbjct: 1603 RTGLVATRQLLLADSHAEGLFHPDCLKLAQLHSNCVDAAKSGSFVQQ--HAVPRVTQRGL 1660

Query: 976  PDFMGKEAYQSYKSNKILGRLYR 998
            PDF+  +A  SY+S+K LG LYR
Sbjct: 1661 PDFLTNDAPDSYRSSKALGHLYR 1683


>gi|395334239|gb|EJF66615.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
          Length = 1225

 Score =  213 bits (541), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 219/771 (28%), Positives = 350/771 (45%), Gaps = 124/771 (16%)

Query: 418  ITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDIT 477
            ITPT      P  E SNRV+R Y    + FLRV+F DE       N L +      R++ 
Sbjct: 431  ITPTTMILEGPFPERSNRVIRMYWQNEECFLRVSFQDE-------NRLQFRFD---REVD 480

Query: 478  LNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS----EDGK---- 529
              SF     + +R R +L  G  + G  FSFLA+S S L++ + WF       DG     
Sbjct: 481  GRSF-----INRRFRGVLRDGITIAGAHFSFLAYSQSALKEHAVWFVKPFRHRDGHGVEC 535

Query: 530  -TSVLDIKKWMGRFT---DKNIAKC----AARMGQCFSSTYA--TVEVPPTEVDPELPDI 579
                  I + +G F    D  +  C    AAR+ Q F++T A  TV+V   E   +L D 
Sbjct: 536  YVDATTIIENLGNFRVSFDTTLIHCPARYAARIAQAFTATDASITVDVDQIERGEDLEDA 595

Query: 580  KRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPP------PCAYQIRYAGCKGVVACWPAK 633
              N Y F+DG+G I+ +LA E+ + ++            P AYQ+R+ G KG+++     
Sbjct: 596  TGN-YCFTDGVGTISRELAREIWRSVRERGRRSRPDRTYPRAYQVRFQGSKGMLSV-DHT 653

Query: 634  GDGIRMSLRESMNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQD 691
              G ++ +R SM KF+++ + T+E+  ++ R  P FLNR +I LL  L V  E   ++QD
Sbjct: 654  LSGRKIVIRPSMTKFEANQSSTIEVARAFDRPGPYFLNRPLIMLLEGLGVSYETLQALQD 713

Query: 692  SMLSKLNQMLVDSDVAFEVLTA---ACAEQGNTAAIMLSA-GFNPQTEPHL-RGMLTCIR 746
            + +    Q +   + +  +L A     + +  +A + L   G +P  +    R  +    
Sbjct: 714  AAVYDAQQSVTSLERSARLLEAHGLGVSFRLTSAMLGLHKLGLDPLNDDVFWRQAMDFAI 773

Query: 747  AAQLWGLREKARIFVPA-GRW-LMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAE 804
               L  L+  ARI VP+   W L+G  D  G L+ G+ F  +  P               
Sbjct: 774  NHVLRELKHHARIPVPSLDSWTLVGVADVHGELQDGEIFACIDSP--------------T 819

Query: 805  TKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL------HHLYDCLVFPQKGDRPHTN 858
              +L  ++G  +I+++P +HPGD++++ A+  P          L + +VF  +G+RP  +
Sbjct: 820  ESRLIYLEGPCLISRSPTIHPGDVQVVHAIGRPPAGSALAKESLRNAVVFSIQGERPLPS 879

Query: 859  EASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVN 918
               G DLDGDLY VT   +L+PP  +++ P  Y  A  K +       D+ +F A+++ +
Sbjct: 880  CLGGGDLDGDLYNVTTRRDLLPP--RTYTPASYEPAAKKLVEHECTMEDVADFVAEYISS 937

Query: 919  ENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPA--HLKPKLYP 976
            + LG I    +  AD S  G LD++C+ LA L + AVD+PK+G+ V +     LK K  P
Sbjct: 938  DTLGIIATTWLKIADQSADGILDQDCLKLAALHSHAVDYPKSGQPVPVNQIPKLKSKTKP 997

Query: 977  DFMGKEAYQS-----YKSNKILGRLYR---------------------QSKDAYDEDISV 1010
            D+   E         Y S K +G+L+R                      + +  DE   V
Sbjct: 998  DWSAPETISRGNEDYYTSMKAIGKLFRSIDLPALQTVQRVARRQRRHMHNANQDDEYADV 1057

Query: 1011 SSEV-DINPVDIHYDTDLEVPESV-----------DFIADAWNQKCSYDGQLNGLLEQYK 1058
               + D  P+D    T + V E +           DFI   W+   SY  QL  +   + 
Sbjct: 1058 LELLYDETPMDDR--TAVAVQERISEFISPEEYDGDFIRRIWDLYKSYTSQLRAICADHT 1115

Query: 1059 VNR-------EEELVTGHI---WSMPKYNSRKQGELKERLKHSYSALRKEF 1099
            +         EEE V G I    S P+       +++E+     S++++E 
Sbjct: 1116 LEHKRSAMLTEEEAVIGTIVAKCSQPRKRKDLMSQMREQTATLVSSVKEEL 1166


>gi|358384596|gb|EHK22193.1| hypothetical protein TRIVIDRAFT_149633 [Trichoderma virens Gv29-8]
          Length = 1731

 Score =  213 bits (541), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 149/470 (31%), Positives = 232/470 (49%), Gaps = 35/470 (7%)

Query: 494 ILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAA 552
           +L  G  + G  ++F   S+SQL+  + +  +   K  +    + +G FT  K +AK A 
Sbjct: 123 LLRAGITIQGVHYNFYGHSNSQLKSRTCYLCAA-SKEQIAQKVEALGDFTKMKTVAKKAK 181

Query: 553 RMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL---DV 609
           R+G  FS   A ++V P +V+ ++PDI+   ++F+DG G I P LA ++++++K+   ++
Sbjct: 182 RIGLLFSVARAAMQVDPKKVE-DIPDIEVGDFIFTDGCGLIAPGLASQLSRRIKIAFRNM 240

Query: 610 NPPPCAYQIRYAGCKGVVACWP--AKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGF 667
              P  +QIRY G KGVV   P  AKG G  + +R+SM KF       +  S++ +  G 
Sbjct: 241 RYTPSVFQIRYRGYKGVVTLDPTMAKG-GPWLKMRKSMKKFSGG----DDLSFSPYVFGN 295

Query: 668 LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLS 727
           LN ++I LL  L +  +     Q      L +   D  VAF +L      +     I+ S
Sbjct: 296 LNDEVIVLLDALGISRQTLLRKQQEHFDFLAKAYKDPRVAFRILCHLNMPEVAERVIIDS 355

Query: 728 AGFNPQTEPHLRGMLTCIRAAQLWGLRE-KARIFVPAGRWLMGCLDELGVLEGGQCFIQV 786
                   P +  ++       L    E K RI +P  R L G  D  GVL+ GQC ++V
Sbjct: 356 LD---AVRPKINKLINAEYDKMLNKRDEQKCRILIPKSRLLFGVCDAWGVLKPGQCAVKV 412

Query: 787 SEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCL 846
           +    G  ++  G +             V++ +NPCLHPGD++ L+ V+ PEL HL DC+
Sbjct: 413 TMDGDGQPYALKGMK-------------VLVTRNPCLHPGDLQKLDVVERPELAHLVDCI 459

Query: 847 VFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQR 906
           VFP  G RP  +  SG DLDGD +FVTWD ++IP +        Y          P+   
Sbjct: 460 VFPTTGRRPTADMMSGGDLDGDTFFVTWDPDIIPSTISQ--AAHYPGVREPLRFSPITDD 517

Query: 907 DIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVD 956
           D + +FAK+  N +LG + N ++  A  S   A+   C  L  L +  VD
Sbjct: 518 DRLLYFAKY-TNASLGRVKNLYLKWARAS--NAMSSECQELNRLFSQCVD 564


>gi|390594179|gb|EIN03593.1| RdRP-domain-containing protein [Punctularia strigosozonata
           HHB-11173 SS5]
          Length = 973

 Score =  213 bits (541), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 182/587 (31%), Positives = 273/587 (46%), Gaps = 90/587 (15%)

Query: 408 DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSY 467
           D + +   +++TP+         + SNRV+R + D    F+RV F +E    +  +    
Sbjct: 427 DGLFDCLHVIVTPSSIVPQEQYPDRSNRVIRSFPDHQQHFVRVQFTEEDYHQLRFD---- 482

Query: 468 FIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---F 524
                 RD+    F     V  R+  +L  GF + GR F FLA+S S L+D + WF   F
Sbjct: 483 ------RDVDGEHF-----VKTRIGGVLRNGFQVGGRTFEFLAYSQSALKDHAVWFVRRF 531

Query: 525 SEDGK-TSVLDIKKWMGRFTDKNI---AKCAARMGQCFSSTYATVEVPPTEVDPELPDIK 580
             D +  +   I++ +G F DK I   +   ARM Q F++T  +V +   E+   +PDI+
Sbjct: 532 KIDNQWITGNTIRESLGSF-DKVIYCPSLYGARMSQAFTATDPSVTITAEEI-VRIPDIE 589

Query: 581 R-----NGYVFSDGIGKITPDLAMEVAQKL------KLDVNPPPCAYQIRYAGCKGVVAC 629
           R       + F+DG+G I+P+LA E+   L      K      P A+QIR AG KG+V+ 
Sbjct: 590 RRDSTGRTWQFTDGVGTISPELAQEITTALVARSRRKKGRYFRPRAFQIRIAGSKGMVSV 649

Query: 630 WPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPG--FLNRQIITLLSTLNVPDEMFW 687
              K  G  + LR SM KF+S ++     + T  +PG   LNR ++ LL  L VP + F 
Sbjct: 650 -NHKLHGRVLCLRPSMIKFESPNSLDIEIAKTFDKPGKFLLNRPLVMLLEGLGVPADEFM 708

Query: 688 SMQDSM----------LSKLNQMLVDSD-----------VAFEVLTAACAEQGNTAAIML 726
            +Q++           L+K  Q+L               +  E L      +GN      
Sbjct: 709 KLQNAAVEDTKAASRSLTKAAQILETHGLGTAFRLTSVFLGLERLGVDLTRRGNR----- 763

Query: 727 SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQV 786
              F  + E   R +   I    L  L+  ARI VP+   L+G  D  GVL+ G+ F  +
Sbjct: 764 ---FRLEDEFIHRAIAYAINHV-LRELKHHARIPVPSSWTLVGIADIHGVLKEGEVFACI 819

Query: 787 SEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD-- 844
                      HG    E   LQ   G V+I ++P +HPGD+++L AV  P    +YD  
Sbjct: 820 Q--------PSHG---GEKIYLQ---GPVMITRSPVIHPGDVQMLRAVGRPPAGSIYDLE 865

Query: 845 ----CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLT 900
                ++F  KG RP  +E  G DLDGD++ V+   ++ P  KK + P  Y  AE K L 
Sbjct: 866 PIPNTVIFSIKGSRPTASELGGGDLDGDVFNVSQYFDIFP--KKCYMPASYATAERKMLD 923

Query: 901 RPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILL 947
           RP D  D+I+F    + N+NLG I    ++ AD S     D+ C+ L
Sbjct: 924 RPSDVGDVIDFVVDFINNDNLGLIATNWLIIADQSPESIFDDACLQL 970


>gi|159123458|gb|EDP48577.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus A1163]
          Length = 809

 Score =  213 bits (541), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 153/450 (34%), Positives = 224/450 (49%), Gaps = 52/450 (11%)

Query: 494 ILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAA 552
           +L  G  L G  +SF   SSSQLR   A +     K  V ++ + +G F+  K +AK A 
Sbjct: 108 LLKEGIILNGVLYSFYGHSSSQLRS-RACYLLRGSKNEVAELVESLGDFSGIKTVAKKAK 166

Query: 553 RMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL---DV 609
           R+G  FSS +A ++VP    +  + DI+ +GY F+DG G +    A  ++QKL +   + 
Sbjct: 167 RIGLLFSSCHALMKVPDGTYEV-IDDIEFSGYNFTDGCGLVGAKTARVLSQKLSIISRNT 225

Query: 610 NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQS-HHTTLEICSWTRFQP--- 665
              P  YQIR+ G KGVV   P          R SM KF      +  +  +++ QP   
Sbjct: 226 RYHPAVYQIRFKGYKGVVMLEPQMPPQYWFQFRRSMRKFSGIGDRSFAVVEYSKTQPATP 285

Query: 666 --------------GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL 711
                         G+LN ++I LL TL V  E+F   Q     +L + + +  VAF  L
Sbjct: 286 LFYSLPLMVQPYTYGYLNDEVILLLHTLGVSAEVFLRKQKEHFQRLQESVTEPTVAFTFL 345

Query: 712 TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLRE--KARIFVPAGRWLMG 769
            +    + + A  ++  G   +    LR  L      ++   RE  K RI VP  R + G
Sbjct: 346 CSL--NRFDLAEKLVLHGIE-RVSGALRS-LVADEHKKMLNKREDQKCRILVPESRLVFG 401

Query: 770 CLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIR 829
             D  GVL+ G+CF++V++   G             +   ++   VV+ +NPCLHPGD+R
Sbjct: 402 VCDPRGVLQEGECFLRVTDDMNGG------------RPRTIVGCEVVVTRNPCLHPGDLR 449

Query: 830 ILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPS---KKSW 886
            L+AVD PEL HL DC+VF  KG+RP  ++ SG DLDGD +FV WD +L+P +      +
Sbjct: 450 KLKAVDRPELSHLRDCIVFAVKGERPAADQMSGGDLDGDTFFVCWDPDLVPSTVSEAAHY 509

Query: 887 PP-MEYNAAEAKTLTRPVDQRDIIEFFAKH 915
           PP  E  A E  T    VD R  IE+FA++
Sbjct: 510 PPGREPFAVEEIT----VDHR--IEYFARY 533


>gi|409046075|gb|EKM55555.1| hypothetical protein PHACADRAFT_161565 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1108

 Score =  212 bits (539), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 198/661 (29%), Positives = 310/661 (46%), Gaps = 112/661 (16%)

Query: 418  ITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDIT 477
            +TP++     P  E  NRV+RKY      FLRV+FMDE       N L Y      RD+ 
Sbjct: 328  VTPSRLLLEGPFPERCNRVVRKYAGHTSNFLRVSFMDE-------NRLQYRFD---RDVD 377

Query: 478  LNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF-----SEDG---K 529
               F     + KR  ++L  G ++ GR F FLA+S S L++ S WF       E+G    
Sbjct: 378  GYDF-----IRKRFGTLLFEGLWIAGRHFKFLAYSQSALKNHSVWFVRDFTAHENGTEVH 432

Query: 530  TSVLDIKKWMGRF----TDKNIAKCAARMG----QCFSSTYATVEVPPTEVDPELPDIKR 581
             +V  I   +G F     D  + +C AR G    Q F++T A VEV   EV P    +  
Sbjct: 433  VTVDSIIAGLGIFRNVPQDLELMRCPARYGARVAQAFTTTEAAVEVEVEEVFPVEDMMDP 492

Query: 582  NGY-VFSDGIGKITPDLAMEVAQKLKLDV-------NPPPCAYQIRYAGCKGVVACWPAK 633
            NGY  F+DGIG ++ +LA ++   L+             P A+QIR+ G KG+++     
Sbjct: 493  NGYRSFTDGIGLVSQELAADIWGALQEKSVRHRRYGRCMPRAFQIRFQGFKGMLSV-DHN 551

Query: 634  GDGIRMSLRESMNKFQSHHT-TLEICSWTRFQPG--FLNRQIITLLSTLNVPDE--MFWS 688
              G  + LR SM KF++  + T+E+ S    +PG  +L+R +  LL  L V     +F +
Sbjct: 552  LSGRAVCLRLSMKKFEAPESMTIEVASAFN-KPGRLYLSRPLTMLLEGLKVRGGFGIFKT 610

Query: 689  MQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSA--------GFNPQTEPHLRG 740
            +QD+++    +    +  +F          G   A  LS+        G     +P L  
Sbjct: 611  LQDAVIKDTKE----ATRSFRQAATLWEAYGLGTAFKLSSIFLDLAKFGSEAIEDPFL-- 664

Query: 741  MLTCIRAAQLWGLRE---KARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSK 797
             L C++      LR+    ARI VP G  L+G  D  G L+ G+ F  V++ +       
Sbjct: 665  -LQCLKFGIYHILRDLKYHARIPVPKGYSLVGVADIHGYLKEGEIFACVAQSW------- 716

Query: 798  HGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD------CLVFPQK 851
                                  +  +HPGD+++  A+  P    ++D       +VF  +
Sbjct: 717  ----------------------SSTIHPGDVQVATAIGRPPPGTVFDEEPLTNTVVFSTR 754

Query: 852  GDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEF 911
            G RP  +  SG DLDGD++ +T  E L+P   + + P EY +A+ KT+     +RD+ +F
Sbjct: 755  GTRPLASCLSGGDLDGDVFMLTTLEGLLP--TEIYEPAEYASAQRKTVPHTSTRRDVADF 812

Query: 912  FAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTM---PA 968
              ++  ++N+G I ++ +V AD S+ G  DE C+ LAEL + A D+PKTG  V+M   P 
Sbjct: 813  ILEYFYSDNIGMIVSSWLVQADQSDQGIFDEACLTLAELHSDAADYPKTGNPVSMRKVPR 872

Query: 969  HLKPKLYPDFMGKEAYQS----YKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYD 1024
            +  P + PD+   E        Y+S + +GRLYR+ +      +  +     N  D+H +
Sbjct: 873  YALPTMKPDWSAPEIQDRLGLFYQSQRSIGRLYREVQ----LPVPRAQPPPANAFDVHLN 928

Query: 1025 T 1025
            T
Sbjct: 929  T 929


>gi|392564352|gb|EIW57530.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
          Length = 1232

 Score =  211 bits (538), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 199/739 (26%), Positives = 332/739 (44%), Gaps = 116/739 (15%)

Query: 332  IMFLVNAVMHKGIINQHQLSDSFFDL--LRGQSREVNVAALKHIYSYKWPVFDACKRLKL 389
            + F + A++  G++N   + D   D+  L  +  +    AL+H +        +   ++ 
Sbjct: 331  VAFQLEALLRNGLLNTGDMLDLRTDVEELHQEDPDFAADALRHFFEKLQSKQRSETVVEC 390

Query: 390  VQEWLLKDPELYKGPKQID-DIVEVR------RLVITPTKAYCLPPEVELSNRVLRKYKD 442
             +  L KD E+ +     D D+ E +       +++TPT+     P    SNRV+RKY D
Sbjct: 391  FKNTLAKDREVQESLSGEDADVPESKGTLKCFHVIVTPTRILLEGPYDTQSNRVVRKYHD 450

Query: 443  LADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLC 502
              + F+RV F DE       N +++     V   +L        + +R  +IL  G  + 
Sbjct: 451  YRENFVRVEFRDE-------NRMAFRWPKEVNSASL--------IEERFGTILKEGLEIA 495

Query: 503  GRKFSFLAFSSSQLRDCSAWFFS-----EDGKTSVLDIKKWMGRFTDKNI--AKCAARMG 555
            GR+F FL +S+S LR+ + WF S     ++G  +   I+  +G F++ N   +K AAR+ 
Sbjct: 496  GRRFRFLGYSNSGLREHTTWFMSDFEHPDEGLLTPDRIRDSLGNFSNVNTIPSKYAARIA 555

Query: 556  QCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEV------AQKLKLDV 609
            Q FS T  +V +   + D +L D+ +  +  +DG G I+  L  E+      AQ  K  +
Sbjct: 556  QAFSGTDPSVRIRRDQWDDQLADLGKKPFWHTDGQGTISVGLRDEIWDVLVKAQPDKAKL 615

Query: 610  NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSH-----HTTLEICSWTRFQ 664
               P AYQIR+ G KG+V       +G+ M LR +MNKF++H        +EI     + 
Sbjct: 616  TLKPSAYQIRFLGFKGIVVV-DETLEGVYMRLRPTMNKFKAHADDEADAEIEIAKAFIY- 673

Query: 665  PGF--LNRQIITLLSTLNVPDEMFWSMQ-----------DSMLSKLNQM----LVDSDVA 707
            PG   L R +I +L  L V  E    +Q           DSM   +N +    L DS   
Sbjct: 674  PGTARLCRPLIMVLEDLGVRKEAMLELQNLAKAVVVTASDSMGETINLLRKHALGDSFGL 733

Query: 708  FEVL-----TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQ---LWGLREKARI 759
              +L        C  +   +  ++   F          +L  ++ AQ   L  ++  ARI
Sbjct: 734  RHILEHLRRAGMCMRREAGSPDVMDNDF----------ILQLVKYAQHHILHEIKHDARI 783

Query: 760  FVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFS-KHGSRFA-----ETKKLQVIKG 813
             +P    L+G  DE      G  ++Q  E      F    G  FA     +  +   +KG
Sbjct: 784  PIPNAHQLVGVADE------GPAYMQREEYKDKEVFCLGMGEIFACVEQPDGGEPLYVKG 837

Query: 814  FVVIAKNPCLHPGDIRILEAVDHPE------LHHLYDCLVFPQKGDRPHTNEASGSDLDG 867
             V I+++P +HPGD++ + A+  P         +L + +V P  G+R   +  +G D+DG
Sbjct: 838  QVTISRSPHIHPGDVQRVRAIGKPPDDKLCLFRNLRNVVVLPSVGERSLASCLAGGDVDG 897

Query: 868  DLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNA 927
            D + V  D  L+P +     P  Y+A + + + RP    DI  F  ++M ++ +G + + 
Sbjct: 898  DEFLVIKDPTLLPTTNAD--PASYDAGDPRDIGRPSTIDDICNFLLEYMQSDVMGLVADQ 955

Query: 928  HVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKP--KLYPDFMGKE--- 982
            H+  AD          C++LA L + AVD+PK G  V + +  +P  +  PD+   E   
Sbjct: 956  HLKIAD----------CMVLARLCSQAVDYPKNGVPVNLESMPEPLIRAKPDWKKSEDND 1005

Query: 983  --AYQSYKSNKILGRLYRQ 999
                  Y+S + LG L+R 
Sbjct: 1006 PRPSDYYESTRALGALFRN 1024


>gi|340521489|gb|EGR51723.1| Hypothetical protein TRIREDRAFT_55637 [Trichoderma reesei QM6a]
          Length = 1734

 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 145/469 (30%), Positives = 229/469 (48%), Gaps = 33/469 (7%)

Query: 494 ILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAA 552
           +L  G  + G  ++F   S+SQL+  + +  +   K  +    + +G FT  K +AK A 
Sbjct: 123 LLKAGISIHGVHYNFYGHSNSQLKSRTCYLCAA-SKEDISRKVEALGDFTKMKTVAKKAK 181

Query: 553 RMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL---DV 609
           R+G  FS   A ++V P  V  ++PDI+   ++F+DG G I P LA E++++ ++   ++
Sbjct: 182 RIGLLFSVARAAMQVDPKMVQ-DIPDIEVGDFIFTDGCGLIAPHLAKELSRRTRIVFRNM 240

Query: 610 NPPPCAYQIRYAGCKGVVACWPAKGDGIR-MSLRESMNKFQSHHTTLEICSWTRFQPGFL 668
              P  +QIRY G KGVV   P    G+  + +R+SM KF       +  S++ +  G L
Sbjct: 241 RYTPSVFQIRYRGYKGVVTLDPTMAKGVPWLKMRKSMKKFSGG----DDLSFSPYVFGHL 296

Query: 669 NRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSA 728
           N ++I LL  L +  +     Q      L Q   +  VAF +L      +     I+ S 
Sbjct: 297 NDEVIVLLDALGISRQTLLRKQQEHFEFLAQAYHNPIVAFRILCHLNMPEDAEKVIIDSL 356

Query: 729 GFNPQTEPHLRGMLTCIRAAQLWGLRE-KARIFVPAGRWLMGCLDELGVLEGGQCFIQVS 787
                  P +  ++       L    E + RI +P  R L G  D  GVL+ GQC ++V+
Sbjct: 357 D---AVRPTINRLVKAEYDKMLNKRDEQRCRILIPKSRLLFGVCDAWGVLKPGQCAVKVT 413

Query: 788 EPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLV 847
               G  ++  G++             V++ +NPCLHPGD++ L+ V+ PEL HL DC+V
Sbjct: 414 MDGDGQPYALKGTK-------------VLVTRNPCLHPGDLQKLDVVERPELAHLVDCIV 460

Query: 848 FPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRD 907
           FP  G RP  +  SG DLDGD +FVTWD ++IP +        Y          P+   D
Sbjct: 461 FPTTGRRPTADMMSGGDLDGDTFFVTWDPDIIPTTVSQ--AAHYPGVREPLRFSPITDED 518

Query: 908 IIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVD 956
            + +FAK+  N +LG + N ++  A  +  GA+   C  L  L +  VD
Sbjct: 519 RLVYFAKY-TNVSLGRVKNLYLKWARAT--GAMSAECQELNRLFSQCVD 564


>gi|395334238|gb|EJF66614.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
          Length = 1233

 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 188/634 (29%), Positives = 292/634 (46%), Gaps = 83/634 (13%)

Query: 415  RLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVR 474
            RL +TPT      P  E SNRV+RKY    D FLRV+F DE       N L Y      R
Sbjct: 434  RLTVTPTTMILEGPFPERSNRVMRKYYHSQDCFLRVSFQDE-------NRLQYRFN---R 483

Query: 475  DITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE-------- 526
            ++    F     +  RV+ +L  G  + G  F FLA+S S L++ + WF           
Sbjct: 484  EVDGRRF-----IDLRVKRVLLEGIRIAGAHFRFLAYSQSALKEHAVWFVKPFRYRDSHQ 538

Query: 527  -----DGKTSVLDIKKWMGRFTDKNIAKC----AARMGQCFSSTYATVEVPPTEVDPELP 577
                 D  T +  + ++     D  + +C    AAR+ Q F++T A V +    V     
Sbjct: 539  NVHFVDATTIIQSLGQFHNLPFDPTLMRCPARYAARISQAFTATDAAVSM-AVGVVYMGR 597

Query: 578  DIK-RNGY-VFSDGIGKITPDLAMEVAQKLKLDVNPP------PCAYQIRYAGCKGVVAC 629
            DIK RNG  VF+DG+G ++P LA  + + L+            P A+Q+R+ G KG+++ 
Sbjct: 598  DIKGRNGKDVFTDGVGTLSPMLAESIWKALQSRSGKTRKGKTYPRAFQVRFQGSKGMLSV 657

Query: 630  WPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPG--FLNRQIITLLSTLNVPDEMFW 687
                 D   M LR SM KF    + +   +    +PG  +LNR +I LL  L VP   F 
Sbjct: 658  DYKLTDNAIM-LRPSMIKFDDSKSAIVEVARAFDRPGAYYLNRPLIMLLEGLGVPYTTFK 716

Query: 688  SMQDSMLSKLNQMLVDSDVAFEVLT-AACAEQGNTAAIMLS---AGFNP-QTEPHLRGML 742
             +QD  +      +    ++ ++            A +ML     G  P   +   R M+
Sbjct: 717  KLQDDAVRDAQTSVTSLKLSAKLFEDHGLGVSFRIAPVMLGLHKLGLGPLDDDIFWRQMM 776

Query: 743  TCIRAAQLWGLREKARIFVPA-GRW-LMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGS 800
                   L  L+ +ARI VP    W L+G  D    L+ G+ F+ V  P           
Sbjct: 777  DFAVNHVLRELKHRARIPVPGTDSWTLVGVADIHRELKEGEIFVCVDSP----------- 825

Query: 801  RFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP------ELHHLYDCLVFPQKGDR 854
               + K L  ++G  V++++P +HPGD++I  A+  P      ++  L + +VF   G R
Sbjct: 826  ---KEKGLIFLEGPCVVSRSPTIHPGDVQIATAIGRPRPGSHYDVESLRNTVVFSTTGSR 882

Query: 855  PHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAK 914
            P  +   G DLDGD Y VT   +L+P  K+++ P  Y  A  K +       D+ EF A+
Sbjct: 883  PLPSCLGGGDLDGDEYNVTTRPDLMP--KRTYDPASYEPAPRKMVDHESTMDDVAEFVAE 940

Query: 915  HMVNENLGTICNAHVVHADHSE--YGALDENCILLAELAATAVDFPKTGKIVTMPAHLKP 972
             + ++ LG I    ++ AD +    G L+ +C+ LAEL + AVD+ KTG+ V +    +P
Sbjct: 941  FISSDTLGIIATNWLITADQTNDTDGILNPDCLRLAELHSLAVDYAKTGQPVPIEQIPRP 1000

Query: 973  --KLYPDF------MGKEAYQSYKSNKILGRLYR 998
              ++ PD+       GK +   Y+S   +G+L+R
Sbjct: 1001 PLRIKPDWNAPETHSGKNSLSFYRSMTAVGKLFR 1034


>gi|353237176|emb|CCA69155.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora indica
            DSM 11827]
          Length = 1262

 Score =  210 bits (535), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 231/810 (28%), Positives = 340/810 (41%), Gaps = 131/810 (16%)

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475
            + ITPT      P    SN V+R+Y + ++ FLRV F DE    +  +          RD
Sbjct: 471  VTITPTTMRLEGPHHGQSNGVIRRYVEHSEHFLRVNFTDEERLQIRWD----------RD 520

Query: 476  ITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS---------- 525
            +   SF     V +RV + L  GF + GR F FLA+S+S LR+ S WF +          
Sbjct: 521  VDGTSF-----VRERVGNFLKNGFDIGGRHFDFLAYSNSGLREHSMWFVAPFRDRYNNQV 575

Query: 526  --EDGKTSVLDIKKWMGRFT-----DKNIAKCAARMGQCFSSTYATVEVPPTEV------ 572
              E  +  ++DI+   G  T     +K  AK  AR+ Q FS+T   +E+   EV      
Sbjct: 576  NAEIIRNLIMDIELQKGGDTAEFKLEKQPAKFGARLAQAFSTTEPAIELKEDEVEIKEDI 635

Query: 573  --DPEL--PDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVA 628
              DP+   PD  +    F+DG G ++  +  E+ + L    NP      +R  G KGV+ 
Sbjct: 636  MVDPKFTKPDGPKTATEFTDGYGCMSLAVRDEIWRAL----NP-----GVRLGGAKGVLG 686

Query: 629  CWPAKGDGIRMSLRESMNKFQSHHTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFW 687
              P   +G ++ L  SM KF+S    L I   +      FLNR +I +L  L V  + F 
Sbjct: 687  INPTL-EGRKVVLHRSMVKFKSKDYGLHIAFKFDHPLKLFLNRPLIAILEHLGVQIDWFK 745

Query: 688  SMQDSMLSKLNQMLVDSDVA----FEVLTAACA----------EQGNTAAIMLSAGFNPQ 733
             +  +  SK+N  L+  D      FE                 E+     + L    +P 
Sbjct: 746  RLLVNAQSKMNSTLLSIDEGAAEFFESRRLGLPFDLPRILRSLEKYEVTRVKLQEYDHPF 805

Query: 734  TEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGN 793
             +  LR  L   +A     L+ KARI VP G  L+G  D    LE  + +I   E     
Sbjct: 806  NDFWLR-CLDVAKAHIDRELKYKARIPVPFGCSLVGVPDVHMELEADEVYICKQE----- 859

Query: 794  CFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE-----LHHLYDCLVF 848
                   R  E K      G+V I ++P +HPGD++  +A   P       H + + +VF
Sbjct: 860  -------RDREPKWFPEKPGYVYITRSPSIHPGDVQKFKAKHPPRGSVYYNHPVVNAVVF 912

Query: 849  PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW-----PPMEYNAAEAKTLTRPV 903
              KG RP  +   G D+DGDL+        I P K  +     PP  Y   +  TL RP 
Sbjct: 913  SCKGARPPASMLGGGDVDGDLF-------QIIPEKPDFKLEVGPPASYEVEDTLTLERPT 965

Query: 904  DQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKI 963
               DI +F  +++ ++ +G +   H++ AD S  G  D  C+ LAEL + AVDF K+GK 
Sbjct: 966  TIEDIADFVVEYINSDKMGLVAIQHLILADQSNSGLHDPKCLKLAELHSKAVDFAKSGKP 1025

Query: 964  VT---MPAHLKPKLYPDFMGKEA-----YQSYKSNKILGRLYRQSKDAYD--EDISVSSE 1013
            V+   +P    P   PDF  KE         Y+S K LG LYR  K   +  E   +  +
Sbjct: 1026 VSFQDLPKRYFP-YTPDFQHKETRFDDQTSYYESPKALGVLYRMIKHIREVPERDKIVYD 1084

Query: 1014 VDINPVD---IHYDTDLEVPESVDFIADAWNQK-------CSYDGQLNGLLEQYKVNR-- 1061
               +PV+    H    +  P     I DA   K         Y  +L  +   Y + R  
Sbjct: 1085 PTFDPVEHPITHALLFIGRPYCPS-IQDALVHKERVMRTFYEYARELKSIRRIYTIGRTP 1143

Query: 1062 --EEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKN 1119
              EEE+V G I       ++++ ++  +++     L  + R  F+          ED   
Sbjct: 1144 LTEEEVVMGTILQASS-QTKRRDDMASKVRDVAGMLVDQVRHAFQGY-------REDPLR 1195

Query: 1120 ALFERKASAWYQVTYHPEWVKKSLDLQEQD 1149
              F R   AWY    H     +S    EQD
Sbjct: 1196 DWFTRALCAWYCSMLHSTGYNESKRADEQD 1225


>gi|358393899|gb|EHK43300.1| hypothetical protein TRIATDRAFT_294361 [Trichoderma atroviride IMI
           206040]
          Length = 1759

 Score =  209 bits (533), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 149/471 (31%), Positives = 237/471 (50%), Gaps = 33/471 (7%)

Query: 495 LSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAAR 553
           L  G  + G  ++F   S+SQL+  + +F +   K  +    + +G FT  K +AK A R
Sbjct: 124 LRTGISIQGVHYNFYGHSNSQLKSRTCYFLAAP-KEQISKKIEGLGDFTKMKTVAKKAKR 182

Query: 554 MGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL---DVN 610
           +G  FS   A ++V P +V+ ++PDI+   YVF+DG G I P LA E++++ ++   ++ 
Sbjct: 183 IGLLFSVARAAMKVDPKKVE-DIPDIEVGDYVFTDGCGLIAPALAKELSRRTRIIFRNMR 241

Query: 611 PPPCAYQIRYAGCKGVVACWP--AKGDGIRMSLRESMNKFQS-HHTTLEICSWTR-FQPG 666
             P  +Q+RY G KGVV   P  AKG G  + +R+SM KF      +  +  +++ +  G
Sbjct: 242 YTPSVFQLRYRGYKGVVTLDPTMAKG-GTWLKMRKSMKKFSGGDDLSFSVVEYSKPYVFG 300

Query: 667 FLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIML 726
            LN ++I LL  L V  ++    Q    + L +   D   AF VL     ++ + A  ++
Sbjct: 301 HLNDEVIVLLDALGVDRKILLRKQQEHFNFLAEAYQDPRAAFRVLCHL--DRPDLAERVI 358

Query: 727 SAGFNPQTEPHLRGMLTCIRAAQLWGLRE-KARIFVPAGRWLMGCLDELGVLEGGQCFIQ 785
               +    P +  ++       L    E K RI +P  R L G  D  GVL+ GQC ++
Sbjct: 359 IDSLD-SVRPSINRLINAEYDKMLNKRDEQKCRILIPKSRLLFGVCDAWGVLKPGQCAVK 417

Query: 786 VSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDC 845
           V+    G  ++  G++             V++ +NPCLHPGD++ L+ V+ PEL HL DC
Sbjct: 418 VTMDVDGLPYALKGTK-------------VLVTRNPCLHPGDLQKLDVVERPELAHLVDC 464

Query: 846 LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQ 905
           +VFP  G RP  +  SG DLDGD +FVTWD ++IP +        Y          P+  
Sbjct: 465 IVFPTTGRRPAADMMSGGDLDGDTFFVTWDPDIIPSTISQ--AAHYPGVREPLRFAPITD 522

Query: 906 RDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVD 956
            D + +FAK+  N +LG + N ++  A  +   A+   C  L  L +  VD
Sbjct: 523 DDRLLYFAKY-TNASLGRVKNLYLRWARAT--NAMRPECQELNRLFSQCVD 570


>gi|299753212|ref|XP_002911846.1| calcium:hydrogen antiporter [Coprinopsis cinerea okayama7#130]
 gi|298410195|gb|EFI28352.1| calcium:hydrogen antiporter [Coprinopsis cinerea okayama7#130]
          Length = 1681

 Score =  209 bits (531), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 183/632 (28%), Positives = 291/632 (46%), Gaps = 76/632 (12%)

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475
            +  TPT+     P    SNR++RKY    D+FLRV F DE       + L Y      R+
Sbjct: 891  VTFTPTRVLLEGPCPTQSNRIIRKYAGFEDKFLRVDFRDE-------DRLQYRWD---RE 940

Query: 476  ITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVL-- 533
            +  + F     V  RV ++L  GF L GR F FLA+SSS LR+ + WF S   K  V+  
Sbjct: 941  VDGSVF-----VRDRVGTVLKLGFELAGRTFEFLAYSSSALREHAVWFMSPFKKDGVIVD 995

Query: 534  --DIKKWMGRFTDKNIAK----CAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFS 587
               I+  +G F    + K     AAR+ Q F++T  +V++   E + ++ D+    Y+F+
Sbjct: 996  AESIRNSVGDFKGTELLKRPSMYAARLAQAFTATDPSVKIRRGEWE-DVDDLGEKPYLFT 1054

Query: 588  DGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVAC---WPAKGDGIRMSLRES 644
            DG+G I+  LA  +   +       P A+QIR+ G KG+V+          GI+M LR S
Sbjct: 1055 DGVGTISSALADRIWAAVGRKNQRRPDAFQIRFLGYKGMVSVDKELDNHPHGIQMRLRPS 1114

Query: 645  MNKFQSHHTTLEIC-----SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQ--------- 690
            M KF++     +       S++     +LNR ++ LL  L    E F  +Q         
Sbjct: 1115 MRKFENKGEEEDAEIEIAQSFSSPNAAYLNRPLVMLLEDLGARKEDFLRLQNLEIADACT 1174

Query: 691  -DSMLSKLNQMLVDSDV----AFEVLTAACAEQGNTAAIMLSAGFNPQT--EPHLRGMLT 743
             D  L +  + +    +     F+ L       G    + LS+     +   P L  + +
Sbjct: 1175 IDESLEQFQKFMSGHGLGRPFGFQYLLRKLWNLG----LDLSSNKKGSSIDTPFLHLLRS 1230

Query: 744  CIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE--GGQCFIQVSEPFLGNCFSKHGSR 801
                  L  ++  ARI +P    L+G  DE    E  G +    + E  +  C  +H   
Sbjct: 1231 VAINDVLRDIKHSARIKIPDSYLLVGIADEGPAYEKRGYKNVYSLREGNIYACIQRH--- 1287

Query: 802  FAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP------ELHHLYDCLVFPQKGDRP 855
              E  +   I+G V I+++P  H GD++ + A+  P          L + +V P  GDR 
Sbjct: 1288 --EDDEPTYIQGTVSISRSPVAHRGDVQRVYAIGEPPAGMFCAFRGLRNVVVLPSVGDRS 1345

Query: 856  HTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKH 915
              +   G D+DGD++ V   + L+P   +++ P  Y +A  KTL R     DI +F  ++
Sbjct: 1346 LASCLGGGDVDGDMFSVITCDALLP--SETFEPSAYESAGTKTLDRDSTVEDICDFVVEY 1403

Query: 916  MVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY 975
            + ++ LG + +  ++ AD S+ G  DE C+ LAEL + AVD+PK G  V + ++  P+  
Sbjct: 1404 INSDVLGLLSDRLLIIADQSKDGFSDEACLALAELCSQAVDYPKQGIPVDLDSNDLPRTL 1463

Query: 976  ----PDFMGKEAYQS-----YKSNKILGRLYR 998
                PD+   E         Y+S + LG LYR
Sbjct: 1464 IRCKPDWHAAEVVSPRETDYYRSTRALGFLYR 1495


>gi|393247225|gb|EJD54733.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
          Length = 1245

 Score =  209 bits (531), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 187/648 (28%), Positives = 292/648 (45%), Gaps = 99/648 (15%)

Query: 405  KQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTM--NA 462
            K+ +DI  +  + ++P+      P  + SNR+L  + +  + F+RV F D   QT   +A
Sbjct: 441  KRRNDISTLH-VAVSPSSVSITGPIPDRSNRILHAFGNFQEHFIRVAFTDNDGQTFRYDA 499

Query: 463  NVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAW 522
            NV                   +  V   V  IL  GF L GR F +LA+S S L+  S W
Sbjct: 500  NV-----------------DTQALVRSHVLPILQNGFKLGGRLFEYLAYSQSALKQHSVW 542

Query: 523  F---FSEDG--KTSVLDIKKWMGRFT--DKNIAKCAARMGQCFSSTYATVEVPPTEVDPE 575
                F++    + S   I+  MG FT  ++  A+  ARM   FS+T  + E+  +    E
Sbjct: 543  MVHPFTDTAGRRHSASTIRADMGTFTKDERCPARVGARMSLAFSATEPSGELLSSNRRME 602

Query: 576  LPDIKRNG-YVFSDGIGKITPDLAMEV--------AQKLKLDVNPPPCAYQIRYAGCKGV 626
             PDI  +G    SDG G I+ +    V        +++  +   PPP   Q+R  G KG 
Sbjct: 603  -PDIGGDGPACMSDGSGLISIEAMAAVWMEFCRGRSKRTVIRPPPPPSVIQVRVGGAKGT 661

Query: 627  VACWPAKGDGIRMSLRESMNKFQS--HHTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPD 683
            +   P    G  + LR SM KF++      +E+C ++T+  P +LNR +I +L    VP 
Sbjct: 662  LFVDPML-PGRAVVLRPSMMKFEAGERFNQIEVCMAFTKPSPAYLNRPLIMVLEARGVPK 720

Query: 684  EMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACA---EQGNTAAIMLSAGFN--------- 731
            E F  +Q  ++ +       + +A   L +A A     G    + L   F          
Sbjct: 721  ETFLRLQQDVVER-------TQLATRTLESAAALLESNGLGGPVGLPTLFRRIRQRFSNF 773

Query: 732  PQTEPHLRGM-------LTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI 784
            P+ + ++          L       L GL+ + RI +P    L+G  D  G+L  G+ F+
Sbjct: 774  PEVDSYVLTQDAFVARTLDFTVNHVLRGLKFRGRIPIPFSWTLVGVPDHHGILNEGEIFV 833

Query: 785  QVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLY- 843
             + E               +  +++ ++G VV++++P  HPGD+ I++A+  P     + 
Sbjct: 834  CIRE--------------EDISQVEYLEGDVVVSRSPTCHPGDVMIMKAIGRPPAGTAFA 879

Query: 844  -----DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKT 898
                 +C+VF  KG R   +   G D DGD Y VT   +L  P+K + P M Y     + 
Sbjct: 880  TERPINCVVFSTKGARSPGSCLGGGDYDGDEYVVTKLPSL-RPTKPAGPAM-YKNTPRQD 937

Query: 899  LTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFP 958
            + RP    DI EFF   ++N+ L  I +  +  AD SE    +E C+ LAEL + AVD+P
Sbjct: 938  IGRPYTMEDIYEFFTNFVINDQLPRIASLWLRIADSSEESVYNEQCMKLAELHSVAVDYP 997

Query: 959  KTGKIVT---MPAHLKPKLYPDFMGKEAYQS-----YKSNKILGRLYR 998
            KTG  V    +P    P   PD+   E   S     Y+S K LG L+R
Sbjct: 998  KTGVPVNHSDIPQ--APNRIPDWSISELGASDRDRVYRSEKALGYLFR 1043


>gi|402218300|gb|EJT98377.1| RdRP-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
          Length = 908

 Score =  208 bits (530), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 183/644 (28%), Positives = 297/644 (46%), Gaps = 92/644 (14%)

Query: 417  VITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDI 476
            ++TPT  +   P ++ SN VLR Y +    FLR++F  E               P+  D 
Sbjct: 140  IVTPTCIHLEGPYLDQSNSVLRAYPEHQHYFLRLSFASEDH------------LPLYNDR 187

Query: 477  TLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE-----DGKTS 531
             ++S   +  V  R+ +IL  G  L GR F FLA+S S LR  S W  +       G  +
Sbjct: 188  DVDS---RLFVGYRIGTILREGVTLAGRHFEFLAYSLSALRQHSVWMVAPFDHPVLGLMT 244

Query: 532  VLDIKKWMGRFTDKNIAKCAARMG----QCFSSTYATVEVPPTEVDPELPDI--KRNGYV 585
               ++  +G F+   ++KC AR G    Q F++T  ++ + P  +  E+PD   K N  +
Sbjct: 245  ANRVRDRLGDFS--RVSKCPARYGARLAQAFTATEPSIVLKPENI-VEIPDKINKANKLI 301

Query: 586  FSDGIGKITPDLA-------MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR 638
            F+DG+G ++ +L        +E    L+  ++ P   +Q R  G KG+++  P    G+ 
Sbjct: 302  FTDGVGGMSLELLEGTWKRLVENRPHLRTKIDFPATVFQFRLGGNKGLLSLNPLL-PGLV 360

Query: 639  MSLRESMNKFQSHHTT-LEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSK 696
            M +R SMNKF +  +  LEI  S+ R +P FLNR  I LL +  V  ++F ++Q + +  
Sbjct: 361  MQVRPSMNKFDAPDSLGLEIAKSFERPRPFFLNRPFIMLLESRGVHADVFLTLQRNAVKA 420

Query: 697  LNQMLVDSDVAFEVLTAACAEQG---------NTAAIM-----LSAGFNPQTEPHLRGML 742
            +      S +   ++T      G         N   I+        G     +P L+ ++
Sbjct: 421  VEDS-KSSLIRASIMTETYGLGGTFWIRLILRNIHDILGLDFEAGQGLTTFYDPFLKHII 479

Query: 743  TCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRF 802
               +A  L  +R +ARI VP    L+G  DE  VL   + +          C  K G   
Sbjct: 480  DVGKANALREIRFRARIPVPNSWTLIGVADEHDVLGKNEIYA---------CIHKPGD-- 528

Query: 803  AETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL--------HHLYDCLVFPQKGDR 854
                +   I+G  ++ K+P L PGD + +  +  P          + L +C+VF  +G R
Sbjct: 529  ---PEPHWIEGPAIVTKSPSLGPGDAQFVTGIGRPPPDCPFMLGPYPLKNCVVFSCRGVR 585

Query: 855  PHTNEASGSDLDGDLYFVTWDENLIPPSKKSWP--PMEYNAAEAKTLTRPVDQRDIIEFF 912
            P  +   G DLDGD + V    +L P     +P  P +Y AAE   L R     D+I+F 
Sbjct: 586  PIPSMLGGGDLDGDEFNVVQYSSLFP----QYPADPDDYTAAERAELDRDCTMNDVIDFI 641

Query: 913  AKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIV---TMPAH 969
              ++ N+ +G +   H++ AD    G    NC  LA+L A A+DF KTG  +    +P+ 
Sbjct: 642  IDYVNNDLVGRLATEHLILADQHPDGVKYSNCHQLAQLYALALDFAKTGTPIDQDQIPSL 701

Query: 970  LKPKLYPDFM------GKEAYQSYKSNKILGRLYRQSKDAYDED 1007
            L   + PD++      GK++ + Y+S + LG ++R+     D D
Sbjct: 702  LN-DMKPDYLQREQQVGKQSTKFYQSQRALGHMFREPDLQIDFD 744


>gi|170094614|ref|XP_001878528.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
 gi|164646982|gb|EDR11227.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
          Length = 1051

 Score =  208 bits (529), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 220/814 (27%), Positives = 353/814 (43%), Gaps = 122/814 (14%)

Query: 410  IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
            ++    + ITPT+     P    SN  +RKYK   D F+RV F DE   +   N      
Sbjct: 211  LISAAHVTITPTRMLLEGPLPTQSNNAIRKYKGCDDNFIRVDFRDEDRSSYKRN------ 264

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS--ED 527
               V D+++        + +RV  +L  G  + GR F FLA+S+S LR+ + WF S  E 
Sbjct: 265  -QDVDDMSV--------LRERVGDVLKQGIMIAGRHFQFLAYSTSSLREHAVWFMSSFES 315

Query: 528  GKTSVLDIK--KWMGRFT--DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDI---- 579
            G   +   K  + +G F+   +  +K AAR+ Q FS+T  +V +   E +  + DI    
Sbjct: 316  GGEMITPQKVVRDLGDFSALAQQPSKYAARIAQKFSATDPSVHIHGHEWE-RVDDIEYIE 374

Query: 580  -------------KRNGYVFSDGIGKITPDLAMEVAQKLKLDVN------PPPCAYQIRY 620
                         ++  + F+DG+G I+  L  E+ + L+ +        P P AYQIR+
Sbjct: 375  ERTIRNDDGDIETRKTVHCFTDGVGTISESLGQEIFETLRNNEGRLEEKAPLPSAYQIRF 434

Query: 621  AGCKGVVAC---WPAKGDGIRMSLRESMNKFQS--HHTTLEICSWTRF-QPGFLNRQIIT 674
             G KGVV           GIRM LR SM KF S      LEI    R+ +  +LNR ++ 
Sbjct: 435  MGSKGVVVVDKQLDKNSSGIRMRLRPSMIKFPSLAQSEPLEISEAFRYPKLCYLNRPLVM 494

Query: 675  LLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAF----EVLTAACAEQGNTAAIML---S 727
             L  L V  + F  +Q++ +++  Q + DS   F    E       +  +   I+     
Sbjct: 495  FLEDLGVRLQTFLDLQNAAIAE-AQTIDDSLEQFRSIMETHRGGLGKSFDFPDILKHFED 553

Query: 728  AGFNPQTE--------PHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVL-- 777
             GF+  ++          ++ +    R   L  ++  ARI +P    L+G  DE      
Sbjct: 554  DGFDLHSQDGRPGIDNQFIKQLRNVARIEVLREIKHSARIKIPDSYLLVGVADEGPAYRK 613

Query: 778  EGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP 837
            +G Q   ++ E  +  C  K G      K+   + G   I+++P  HPGD++ +  +  P
Sbjct: 614  DGYQNVYELPEGHIYACVQKAGD-----KEPTWLSGSCSISRSPVAHPGDVQRVRCIGKP 668

Query: 838  E------LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEY 891
                     HL + +V P  G R   +   G DLDGD+Y V   E L+P   +   P  Y
Sbjct: 669  PEDKLCLFSHLVNVVVLPSVGKRSLASCLGGGDLDGDIYSVIMLEPLLP--TQMVVPASY 726

Query: 892  NAAEAKTLTRPVDQ---RDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLA 948
            ++   + L  P  Q     + +F  +++ ++ LG + N  +V AD S+ G  D++C  LA
Sbjct: 727  DSLPPRAL--PPGQSIEEAVCDFIVEYIHSDVLGLLSNRLLVIADQSKEGVFDQDCEHLA 784

Query: 949  ELAATAVDFPKTGKIVTMPAHLKP----KLYPDFMGKE-----AYQSYKSNKILGRLYRQ 999
             L + AVD+PK G  V +     P    +  PD+   E         YKS + LG ++R 
Sbjct: 785  VLCSQAVDYPKQGNPVDLSGGALPHPLIRCKPDWQSAEINAPRQTDYYKSTRALGVMFRD 844

Query: 1000 SKDAYDEDISVSSEVD-------INPVDI--------HYDTDLEVPESVDFIADAWNQ-- 1042
             +   D  +    + D        +P+ +        H  T +E P   +F+   + +  
Sbjct: 845  HRLEVDGPLPEMEQRDRSAEPLLSDPISLAYKDRVQRHIGTAIE-PSEHEFVTTLFQRYV 903

Query: 1043 -KCSYDGQLNGLLEQYKVN-REEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFR 1100
             + SY   ++ L     +  REEE+V G I +    N R + +  ER+K     + KE R
Sbjct: 904  AELSYICAIHTLSNSRTIRLREEEVVAGTILASCN-NKRMRRDRIERVKVHSGVIVKEIR 962

Query: 1101 Q-VFEKMDSDCELLSEDEKNA----LFERKASAW 1129
            Q +      D E L+ D + A      ER   AW
Sbjct: 963  QDLVAPGYHDSEKLTPDARLAGQLLTLERAWQAW 996


>gi|443895352|dbj|GAC72698.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
          Length = 1496

 Score =  204 bits (520), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 194/629 (30%), Positives = 283/629 (44%), Gaps = 85/629 (13%)

Query: 418 ITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDE---GLQTMNANVLSYFIAPIVR 474
           +TPT+     P   +SNRV+R Y D    F RVTF +E   G  T+ AN           
Sbjct: 391 VTPTRVLLSGPHTHVSNRVIRAYSDHWHHFARVTFSNEDRGGATTIKANY---------- 440

Query: 475 DITLNSFSQKTRVFK-RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FSEDGKT 530
                 F +  R  + RV  IL  G  + GR +  LA+SSS +   + WF   F +   T
Sbjct: 441 -----GFVESERYIQSRVLKILQRGINVAGRHWEMLAWSSSSMSAHTVWFVTPFRDKDGT 495

Query: 531 SVLD--IKKWMGRFTD--KNIAKCAARMGQCFSSTYATVEVPPTEV----DPELPDIKRN 582
            V    I++ +G FTD  +  A   AR+ Q FS+T  TVEV  + +    D E PD K  
Sbjct: 496 HVHAEVIRRELGDFTDVARYPAMYGARLSQAFSATARTVEVDSSLILHMPDIETPDRK-- 553

Query: 583 GYVFSDGIGKITPDLAMEV-----------AQKLKLDVNPPPCAYQIRYAGCKGVVACWP 631
              ++DG+G+I+P+L  EV            +K K      P A QIR  G KG +   P
Sbjct: 554 -MAYTDGVGQISPELMAEVWEKYVTSALGEPRKRKFFKAAAPSAIQIRIGGHKGCLTVNP 612

Query: 632 AKGDGIRMSLRESMNKFQSHHTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQ 690
            +  G +++LR SM+KF S H  LE+  S  R     LNR +I  L    VP      +Q
Sbjct: 613 -RLQGKQLALRPSMSKFVSPHQDLEVANSSARCLSAKLNRPLINALDDRGVPATALLDIQ 671

Query: 691 DSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLS-------AGFNPQTEPHLRGMLT 743
              ++ + +     D   ++ +A     G    I+            +  ++     +  
Sbjct: 672 KEAIAHIGRARTHFDETAKLCSAYSFGTGCDLHILFQKLHKHGMGATSIHSDSFFLVLAK 731

Query: 744 CIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFA 803
            + AA L  ++ KARI V  G  L+G  DE   L+ G+ F QV    LG           
Sbjct: 732 AVIAAALGDMKRKARIPV-RGVTLIGVADEFAFLKEGEVFAQVEHVDLGQV--------- 781

Query: 804 ETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH---HLYDCLVFPQ-KGDRPHTNE 859
              + +V+ G  +I ++P + PGDI +++ V  P  H    L + +VF       P    
Sbjct: 782 ---RRRVLVGTKLIGRSPTVDPGDIAMVKCVRPPPGHPLLQLRNVVVFNTCTRQEPLPRR 838

Query: 860 ASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKT----LTRPVDQRDIIEFFAKH 915
             G DLDGDLY +  DE L  P+     P       AKT    L R  +  D+  FFA  
Sbjct: 839 LGGGDLDGDLYTIYEDERLFLPT-----PQPGTTFHAKTRPMELDRYCNSTDLANFFADF 893

Query: 916 MVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIV--TMPAHLKPK 973
           M+N+ +G + + H+  AD S+ G+LD  C  LA L + A DF KTG  V  T    +   
Sbjct: 894 MLNDFIGLVSHMHLRIADASKAGSLDGRCKQLAMLHSLATDFRKTGVAVKRTQLPRMDEP 953

Query: 974 LYPDFMG----KEAYQSYKSNKILGRLYR 998
           + PDF+     ++   +Y S ++LG LYR
Sbjct: 954 IIPDFLAQGEPRQGGLTYPSTRVLGYLYR 982


>gi|449547217|gb|EMD38185.1| hypothetical protein CERSUDRAFT_113336 [Ceriporiopsis subvermispora
            B]
          Length = 1207

 Score =  203 bits (517), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 204/737 (27%), Positives = 336/737 (45%), Gaps = 98/737 (13%)

Query: 328  ISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAA---LKHIYSYKWPVFD-- 382
            + + + F +  ++  G+IN  +L D+    +   +++    A   L+H Y+ +  V D  
Sbjct: 320  LDWPVAFQIEMMLRNGLINTEELMDTLQKPINDLAKKYPATAGDILRH-YTEQLRVRDPK 378

Query: 383  ----ACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLR 438
                 C    +  ++ L+  ++  G            +  TPTK     P V  SNRV+R
Sbjct: 379  ETPLQCFNRVVPTQYGLEPLQISGGN------FTCYHVTFTPTKMVLEGPYVIQSNRVIR 432

Query: 439  KYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGG 498
            +Y    DRF+RV F DE       + L Y  A  V   +L        +  RV  IL  G
Sbjct: 433  RYVGFQDRFIRVDFRDE-------DRLQYRWAKEVDGSSL--------LHDRVGGILRKG 477

Query: 499  FYLCGRKFSFLAFSSSQLRDCSAWFFS-----EDGKTSVLDIKKWMGRFTDKNI----AK 549
            F L GR+F FLA+S+S LR+ + WF +      +G  +   I++ +G F+   +    +K
Sbjct: 478  FDLAGRRFEFLAYSTSALREHAVWFMNPFEHPREGLVTAQGIRESLGDFSGSKVIKQPSK 537

Query: 550  CAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDL------AMEVAQ 603
             AARM Q F++T  +V +   + +  +PD+  + Y+++DG+G I+ +L      A+  A 
Sbjct: 538  YAARMAQAFTATDPSVSITRDQWE-TVPDLGEDPYLYTDGVGTISAELGDMIWDALCAAS 596

Query: 604  KLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSH-----HTTLEIC 658
                     P AYQIR+ G KGVVA    +  GI+M LR SM+KF++         +EI 
Sbjct: 597  PDGKRRGVKPSAYQIRFLGFKGVVAV-DERLQGIKMRLRPSMDKFKARADEEAEAKIEIA 655

Query: 659  SWTRFQPG--FLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACA 716
                + PG  +LNR ++T+L    V    F  +Q+ + +++         A  VL A   
Sbjct: 656  RAFDY-PGTCYLNRPLVTVLEDRGVDKSAFMRLQERIKAEIYTASDSLAQAISVLKANSI 714

Query: 717  EQGNTAAIMLSA----GFNPQTEPHLR--------GMLTCIRAAQLWGLREKARIFVPAG 764
              G     +L      G     E +++         +L   +   L  ++  ARI +P  
Sbjct: 715  GNGYKLGFILQGLKNIGMGLPYEKNVQVLNDSFIDRLLQYAKNYVLRNIKHDARIPIPES 774

Query: 765  RWLMGCLDELGVLEGGQC--FIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPC 822
              L+G  DE    E   C     + E  +  C      +  +  +   ++G +++ ++P 
Sbjct: 775  YLLVGIADEGPAYEAEGCENVYILPEGHIYACV-----QHPDDPEPIYLEGNIMVTRSPT 829

Query: 823  LHPGDIRILEAVDHPE------LHHLYDCLVFPQKGD------RPHTNEASGSDLDGDLY 870
            +HPGD++ + A+  P         +L + +V P  G+      R   +   G DLDGDLY
Sbjct: 830  VHPGDVQQVTAIGKPPEGKICFFRNLKNVVVLPSTGNCGGDCPRSLASCLGGGDLDGDLY 889

Query: 871  FVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVV 930
             V     L+P   +S     Y +A   TL R     DII+F  +++ ++ LG + + H++
Sbjct: 890  QVVKYAPLVP--LESQLAGSYESAGTHTLDRDSTVDDIIDFIVEYIDSDVLGLLSDRHLM 947

Query: 931  HADHSEYGALDENCILLAELAATAVDFPKTGKIV---TMPAHLKPKLYPDFMGKEAYQS- 986
             AD S+YG  D +C+ LA L + AVD+PK G  V     P  L P   P++   E   S 
Sbjct: 948  IADQSKYGVNDPSCLELARLCSQAVDYPKNGIPVDKGDAPRTLLP-YKPNWKQAEDNDSR 1006

Query: 987  ----YKSNKILGRLYRQ 999
                Y+SN+ LG L+R 
Sbjct: 1007 PTDYYESNRALGELFRN 1023


>gi|390596235|gb|EIN05637.1| RdRP-domain-containing protein [Punctularia strigosozonata HHB-11173
            SS5]
          Length = 1230

 Score =  203 bits (516), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 214/815 (26%), Positives = 353/815 (43%), Gaps = 152/815 (18%)

Query: 408  DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSY 467
            + I +   + +TP+         + SNRV+R+Y +    F+RV F DE           Y
Sbjct: 399  NGIFDCLHVAVTPSSIIPREQYPDRSNRVIRRYPNHQQHFVRVQFCDE----------DY 448

Query: 468  FIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---F 524
                  RD+  + F     V  RV  ++  G  + GR F FLA+S S L+D + WF   F
Sbjct: 449  LQYRFDRDLDGDGF-----VRDRVGGVMRTGIRIGGRAFEFLAYSQSALKDHAVWFVRPF 503

Query: 525  SEDG-KTSVLDIKKWMGRFTD--KNIAKCAARMGQCFSSTYATVEVPPTEV----DPELP 577
            + DG +     I++ +G FT   +  +   ARM Q F++T  ++ V P E+    D E+ 
Sbjct: 504  NLDGHRVDAEAIRQSLGTFTKVIRFPSLYGARMSQAFTATDPSITVTPNEIKRIPDIEIV 563

Query: 578  DIKRNGYVFSDG-------------------IGKITPDLAMEVA------QKLKLDVNPP 612
            D       F+DG                   +G I+  LA ++A      +K K      
Sbjct: 564  DSTGQKRQFTDGSLPSTLSYADPIDYFRLAGVGTISLALAKDIASALLAVRKRKRGKYFK 623

Query: 613  PCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPG--FLNR 670
            P A+QIR+AG KG+V+      +G  + LR SM KF+S  +     + T  +PG   LNR
Sbjct: 624  PRAFQIRFAGSKGMVSV-DINEEGRVLCLRPSMIKFESPDSLDIEIAKTFDRPGKFLLNR 682

Query: 671  QIITLLSTLNVPDEMFWSMQDSMLSKLNQM---LVDSDVAFEVLTAACAEQGNTAAIMLS 727
             +I +L  L  P   F ++QD+ + +       L  S    EV     A +  + A +  
Sbjct: 683  PLIMILEGLGAPAAAFEALQDAAVEEAEAARESLQKSARMLEVHGLGGAYRLPSVADVPH 742

Query: 728  AGFNPQTEPHLRGMLTCI------RAAQ------LWGLREKARIFVPAGRWLMGCLDELG 775
                P++    RG   CI      R         L  L+  ARI VP    L+G  D  G
Sbjct: 743  RLGLPRSS-EARGTTQCIDDEFMDRMVAFAVNHVLRELKHHARIPVPDSWTLVGIADIHG 801

Query: 776  VLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVD 835
            VLE G+ F  V  P       + G R         ++G V++ ++P  HPGD+++  A+ 
Sbjct: 802  VLEEGEVFACVQPP-------QGGQRV-------YLEGNVMVTRSPVAHPGDVQMARAIG 847

Query: 836  HPELHHLYDC------LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPM 889
             P     YD       ++F  KG RP  +   G DLDGD++ V+   ++ P  +   PP 
Sbjct: 848  RPPPGSAYDTEPIPNTVIFSVKGSRPLPSALGGGDLDGDVFNVSQFADIFP--RHLHPPA 905

Query: 890  EYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAE 949
             Y AA  K L R     D+++F    + N+ LG I    ++ AD S  G     CI L++
Sbjct: 906  SYEAAVRKELDRDSTIEDVMDFVVDFINNDRLGVIAINWLIIADQSPEGVFCTECIKLSQ 965

Query: 950  LAATAVDFPKTGKIVTMPAHLKPKLY---------PDFMGKEAYQSYKSNKILGRLYRQ- 999
            L + AVDF K+G+  ++P    P+L          P+ +  E    Y+S K +G+L+R+ 
Sbjct: 966  LHSDAVDFQKSGR--SVPLGDVPRLLMRARPDWNAPETINPEDGAYYESTKAIGKLFRRI 1023

Query: 1000 --------------------------SKDAYDEDISVSSEVDI--NPVDIHYDTDL---- 1027
                                      ++D  ++D+++++E  +  +P+ I     L    
Sbjct: 1024 DLPGPQEAKEQARAQRRQMKRRRHGLTEDDIEDDLALTAEHAMWDDPITIALQARLREFL 1083

Query: 1028 -----EVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNR--------EEELVTGHIWSMP 1074
                 + P  V+ + + +++ CS   +L  L + + +++        EEE+V G I +  
Sbjct: 1084 DLDESDDPTMVESVGELFDKYCS---ELLYLCDTHTISQSRRGMPLTEEEVVVGTIVAKT 1140

Query: 1075 KYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSD 1109
                RK+ E+  +++   + +    R      D+D
Sbjct: 1141 S-QPRKRREVMAKMREQSALVVNSVRSDLAGEDAD 1174


>gi|406695038|gb|EKC98353.1| RNA-dependent RNA polymerase [Trichosporon asahii var. asahii CBS
           8904]
          Length = 1018

 Score =  203 bits (516), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 222/457 (48%), Gaps = 41/457 (8%)

Query: 410 IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
           IV +R + +TPT+    PP+ E SN V R+Y D  D  +RV F DEG + +N   +  F 
Sbjct: 376 IVMIRTVTVTPTRVLVGPPQPETSNSVTRRYSDKLDAIIRVHFTDEG-ERLN---VQKFT 431

Query: 470 APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGK 529
            P       +    +  +  RVR  L  G  + G ++  +A S SQ +D + WF      
Sbjct: 432 KPA------DDACPEKGLMARVRRALQYGIEVAGCRYYPVASSGSQQKDHNMWFIDH--- 482

Query: 530 TSVLD---IKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVF 586
            +V+D   + +WMG+  ++ +AK AAR+G  FS++ A V +  T  D  L D+ RN + F
Sbjct: 483 -TVIDRPELSRWMGQVKEQVVAKHAARLGLPFSASRA-VALKVTVSD--LADVFRNDHCF 538

Query: 587 SDGIGKITPDLAMEVAQKL--KLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
           +DG G    D+  + A+ +  K      P A Q R  G KGV+A WP       + +R S
Sbjct: 539 TDGCGVAGIDVMRQAARSMNNKRKTGEAPSALQFRLGGAKGVLAYWPGMAGNDEILMRPS 598

Query: 645 MNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSM---QDSMLSKLNQML 701
             KF+S    L +    ++Q  FLNRQ I ++S   VPD +F  +       +  L    
Sbjct: 599 QTKFESRLKELNVVRIAKYQAAFLNRQFINIMSACGVPDALFEQLFVEATQAIEGLPDRA 658

Query: 702 VDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761
           V  D+  + L             ++ AGF     P ++ +   + A  L  L+ +AR+ +
Sbjct: 659 VLRDLTKDDLVLFQQYTEFPMVQVIDAGF--ARNPMIQDLARLVEARALQDLKWRARVKL 716

Query: 762 PAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNP 821
             G +L+G  DE G+L+ G+ F+Q               +  E  +  V+ G VV+ + P
Sbjct: 717 DMGVYLIGVADETGLLKEGEVFVQY--------------QVTENDEPVVVTGAVVVCRAP 762

Query: 822 CLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTN 858
            LHPGD+R   AVDHP+L HL + +VF  KG RP  N
Sbjct: 763 ALHPGDVRTARAVDHPQLRHLKNVVVFSIKGARPLPN 799



 Score = 44.7 bits (104), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 30/161 (18%)

Query: 955  VDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEV 1014
            +DF KT     +   L+P+ +PDFMGK    +YKS K+LG L+R+          V ++ 
Sbjct: 820  LDFAKT----ELTTELRPEKWPDFMGK----TYKSKKVLGVLFRR----------VQADP 861

Query: 1015 DINPVDIH---YDTDLEV---PESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTG 1068
               P DI    YD +  +   P+  D        K  Y+  ++  + ++    E E+V+G
Sbjct: 862  KFEPSDIRRSAYDPEHWLWGHPQYHDIYTRLMAVKAGYECDMHYAMRRFSAT-ELEIVSG 920

Query: 1069 HI-WSMPKYNSRKQGELKERLKHSYSAL----RKEFRQVFE 1104
             + +   +  SR   E+ E LK  Y  +    R++ R+  E
Sbjct: 921  IVTYHKQRKTSRDITEVSESLKDHYEHITNLCREQARKCLE 961


>gi|389748402|gb|EIM89579.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
          Length = 1346

 Score =  203 bits (516), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 209/714 (29%), Positives = 317/714 (44%), Gaps = 101/714 (14%)

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDL----ADRFLRVTFMDEGLQTMNANVLSYFIAP 471
            +  TPT+     P    SNRV+RKY+++     + F+RV F DE       + LSY    
Sbjct: 426  ITFTPTRTILEGPNPTQSNRVIRKYQEIDPTFTENFIRVDFRDE-------DRLSYRWD- 477

Query: 472  IVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF------- 524
              RD+    F Q+     RV  IL  GF L GR F FLA+S+S LR+ + WF        
Sbjct: 478  --RDVDGTYFLQQ-----RVGHILKNGFELAGRDFEFLAYSTSALREHAVWFVHPFHLPS 530

Query: 525  ---SEDGK-TSVLDIKKWMGRFTD--KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPD 578
               S  G   +   I++ +G F++  +  +K AAR+ Q F++T  +V+V   + + E+ D
Sbjct: 531  SHPSHSGTYVNGHYIRQSLGDFSNVIRQPSKYAARIAQAFTATDPSVKVTRDQWE-EMED 589

Query: 579  IKRNG-YVFSDGIGKITPDLAMEVAQKL---KLDVNPP---PCAYQIRYAGCKGVVACWP 631
            I  +  Y+ +DG+G I+ +L   +  +L   +LD       P AYQIR+ G KG+V    
Sbjct: 590  IGDDDRYLHTDGVGTISLELGGMIWAELCESRLDHGGNTVRPSAYQIRFLGYKGMVVI-D 648

Query: 632  AKGDGIRMSLRESMNKF---QSHHTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFW 687
             +  GI+M LR SM KF         LEI  ++ R     LNR ++ +L    V  E F 
Sbjct: 649  HRLVGIKMRLRPSMRKFVVDNDEDAWLEIARAFERPNSFSLNRALVMILEDRGVRKESFI 708

Query: 688  SMQDSMLS----------KLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSA----GFNPQ 733
            S+Q+   S          K   +L    + F        EQ     +        G    
Sbjct: 709  SLQEQTKSLIYTSSDSIEKFVSLLRTHGMGFGYHLPFILEQLVKLGLDFKETNRDGSKAI 768

Query: 734  TEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDE-LGVLEGGQCFIQVSEPFLG 792
                L  +L       L  ++ KA+I VP    L+GC DE L  +  G     V     G
Sbjct: 769  ENAFLGRVLRFAMNGCLRDIKHKAQIPVPGSYKLVGCADEGLAYIREGLDKDSVYTLPAG 828

Query: 793  NCFS--KHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE------LHHLYD 844
              F+  + G   +ETK    +KG  +I+++P +HPGDI+ + AV  P          L +
Sbjct: 829  CIFACVQEGPG-SETK---FLKGPCMISRSPVVHPGDIQRVWAVGEPPKDKICFFKDLKN 884

Query: 845  CLVFPQKGD------RPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKT 898
             +V P   D      R   +   G DLDGD Y +  D   + P   S P  +Y  A  +T
Sbjct: 885  LVVLPSVADPSSDTDRSLASMLGGGDLDGDQYDIIIDNGSLMPEVHSQP-ADYTGAGTRT 943

Query: 899  LTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFP 958
            L R     DI +F  +++ ++ LG + + H+  AD S  G  D  C+LLAEL + AVD+P
Sbjct: 944  LDRDATVDDICDFIVEYINSDVLGLLSDKHLTIADQSREGTFDHRCMLLAELCSQAVDYP 1003

Query: 959  KTGK---IVTMPAHLKPKLYPDFM-----GKEAYQSYKSNKILGRLYRQ-----SKDAYD 1005
            K GK   I  +P  L  +  PD+      G      Y+S++ LG L+R      ++    
Sbjct: 1004 KNGKPVDISDLPRSLS-RFKPDWHQAEVSGPRENDYYESDRALGHLFRNIELMPTQKGVP 1062

Query: 1006 EDISVS-SEVDINPVDI-------HYDTDLEVPESVDFIADAWNQKCSYDGQLN 1051
             D+    +  D++P+ +       H   D   P S+  +          DG L+
Sbjct: 1063 LDVPTKPTNPDMDPICLAIAPRVQHVLLDYVAPSSISTVGSMAGSDAGIDGALD 1116


>gi|392567096|gb|EIW60271.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
          Length = 1228

 Score =  201 bits (510), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 192/636 (30%), Positives = 298/636 (46%), Gaps = 80/636 (12%)

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475
            +  TPT+     P V +SNRV+R++    D F+RV F DE       + L Y  A  V  
Sbjct: 430  ITFTPTRVILEGPYVSVSNRVIRQFAGFEDHFVRVDFRDE-------DRLQYRWAREVDG 482

Query: 476  ITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS-----EDGKT 530
             TL        + +RV  IL  GF L GR++ FLA+SSS LR+ + WF +       G  
Sbjct: 483  TTL--------LTERVGGILKHGFELGGRQYEFLAYSSSALREHAVWFMNPFEHPTQGFV 534

Query: 531  SVLDIKKWMGRFTD--KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK--RNGYVF 586
                I+  +G FT+  K  +K AAR+ Q F++T  +V +   + + E+ D++  +  Y+F
Sbjct: 535  CAQRIRDSLGDFTNVIKQPSKYAARLAQAFTATDPSVSISRDQWE-EMEDLESEQEDYLF 593

Query: 587  SDGIGKITPDL------AMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMS 640
            +DG+G I+ +L      A+  A++    V+  P AYQIR+ G KGVV     +  GI+M 
Sbjct: 594  TDGVGTISQELGDMIWEALCTAKESLRRVDHTPHAYQIRFLGFKGVVVI-DKRLKGIKMR 652

Query: 641  LRESMNKFQSHH---TTLEICSWTRFQPG--FLNRQIITLLSTLNVPDEMFWSMQDSMLS 695
            LR SMNKF+        +EI  W   +PG  +LN+ +I +L    V  + F  +Q+   +
Sbjct: 653  LRPSMNKFEVPDMDIAPIEIARWFD-RPGTSYLNKALIMILEDRGVEQKAFLKLQEMAAA 711

Query: 696  KLNQMLVDSDVAFEVLTAACAEQGNTAAIML----SAGFNPQTEPH----------LRGM 741
            ++            +L A    Q      +L    +AG   + EP           LR +
Sbjct: 712  QITTASDTITSTTLLLKAHNLGQSFNIPFVLKALRAAGLGMRGEPDSPAGDLGDTFLRSL 771

Query: 742  LTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE--GGQCFIQVSEPFLGNCFSKHG 799
            L   +   L  ++  ARI +P    L+G  DE  V E  G +    + E  +  C     
Sbjct: 772  LIFAQHHILRDIKHGARIPIPDSYLLVGVADEGPVYEKEGVEDVFMLQEGQIYACIQNEA 831

Query: 800  SRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE------LHHLYDCLVFPQKGD 853
                  +K   +KG V I+++P +HPGD++ + A+  P          L + +V P  G 
Sbjct: 832  D-----EKPVYLKGTVSISRSPVVHPGDVQRVWAIGEPPAGKECFFRGLKNVVVLPSVGK 886

Query: 854  RPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQR--DIIEF 911
            R   +   G DLDGDLY +   + LIP       P  Y +   ++L    D    DI +F
Sbjct: 887  RSLASMLGGGDLDGDLYSIIKYDPLIPIEHAE--PGSYVSVGTRSLPDGRDSTVDDICDF 944

Query: 912  FAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK 971
              +++ ++ LG + + H++ AD S+ G  D  C+ LA L + AVD+PK G  V +     
Sbjct: 945  IVEYINSDVLGLLSDRHLIIADQSKDGTSDPACLELARLCSQAVDYPKNG--VPVDIFDS 1002

Query: 972  PKLY----PDFMGKEAYQS-----YKSNKILGRLYR 998
            PKL     PD+   E         Y S++ LG L+R
Sbjct: 1003 PKLLIREKPDWKKAEDSDPRDTDYYFSSRALGELFR 1038


>gi|403377070|gb|EJY88529.1| Suppressor of ascus dominance [Oxytricha trifallax]
          Length = 1160

 Score =  200 bits (509), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 177/690 (25%), Positives = 306/690 (44%), Gaps = 116/690 (16%)

Query: 390 VQEWLLKDPELY-------KGPKQIDDIVEVRRLVITPT-KAYCLPPEVELSNRVLRKYK 441
           VQ+ +LK+ + +       K P+  D  +E   L ITPT   Y L  + +LSN +LR+ +
Sbjct: 289 VQQTILKNWDRFHQDILKMKLPENDDGKIEAYSLTITPTFNIYNLNSQ-QLSNVILRQNQ 347

Query: 442 DLADRFLRVTFMDEGLQTMNANVLSYFI----APIVRDITLNSFSQKTRVFKRVRSILSG 497
           +  D+FL+V F  + L+     + S +      PI    +L+++  K          +S 
Sbjct: 348 NYHDKFLKVDFKGDDLEDAGQILQSKYGFKQGKPIKHKNSLSNYVWKP---------ISE 398

Query: 498 GFYLCGRKFSFLAFSSSQLRDCSAWFFSE--------------DGKTSVLDIKKWMGRF- 542
           G  +    + FL  S+S L+  + W  +               +G   +  I++  G   
Sbjct: 399 GINILHMNYQFLGNSNSSLKQHTIWMLNTSQFEDKCDNVVRLYNGMELLQQIQESFGHLP 458

Query: 543 -----TDKNIAK-----CAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGK 592
                 +K + K       AR  Q FS T    E+   +++  +PDI +NG  FSDG G 
Sbjct: 459 KVVKSENKELNKGITLHTLARAAQLFSGTRHICELRADQIEY-IPDIIKNGKNFSDGNGC 517

Query: 593 ITPDLAMEVAQKLKLDVNPPPC-AYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSH 651
           I    + E+A K+    N   C AYQ R  GCKG +     +  G ++ +R+SM KF++ 
Sbjct: 518 I----SQELANKINAIYNLQDCSAYQFRLGGCKGTLVV-NQELQGEKIQIRKSMKKFENS 572

Query: 652 HTTLEICSWTRFQPGFLNRQIITLLSTLNV-----------------------------P 682
            T+L I        GF NRQ+I+L+    +                              
Sbjct: 573 DTSLNIARCATPSQGFFNRQLISLIENQGIIFEDIEQILESSDQLKFINQINSFENTIKD 632

Query: 683 DEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGML 742
           +++ +S Q + +S L  ML ++   F    +   +Q       +    + Q++P ++ + 
Sbjct: 633 EDLIFSQQQAKISNL--MLTNTQKEFINYISESGQQ--MFKTFVEKRMDVQSDPFIKNLS 688

Query: 743 TCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRF 802
             +       ++ K RI +     L+G  D L VL+ G+ F+QV +P +           
Sbjct: 689 KLLSHQITSQIKNKGRIPIKDSAILIGVADYLQVLQPGEIFLQVQDPDIN---------- 738

Query: 803 AETKKL-QVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEAS 861
            E+K + +VI G V+I ++PCLHP D+  ++AV+  +  HL + +VF   GD P  ++ +
Sbjct: 739 EESKDIYEVITGDVIITRSPCLHPNDVMKVKAVNCNQYKHLNNVVVFSANGDEPIQSQLA 798

Query: 862 GSDLDGDLYFVTWDENLIPP------SKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKH 915
           G DLDGD++ + W+E L+         K+ +        +AK    P +  D +  F K+
Sbjct: 799 GGDLDGDVFHIIWNERLVSQFTPQFLEKQKFDSKRIVGYQAKYTLIPQEIADSLLHFFKN 858

Query: 916 MVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAH------ 969
            +   LG I + H+   D     +  ++ +    L   AVDF K G    +  +      
Sbjct: 859 NI---LGKIDSLHLAICDKQSPNS--QHALSTEFLHQQAVDFQKHGCKPDIEEYHEIRNE 913

Query: 970 -LKPKLYPDFMGKEAYQSYKSNKILGRLYR 998
            L  +++PD+M  ++  SY S KI+G +YR
Sbjct: 914 GLDNQMFPDYMQSKSQDSYASQKIMGTIYR 943


>gi|401885409|gb|EJT49528.1| hypothetical protein A1Q1_01432 [Trichosporon asahii var. asahii
           CBS 2479]
          Length = 1000

 Score =  200 bits (508), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 141/457 (30%), Positives = 217/457 (47%), Gaps = 52/457 (11%)

Query: 410 IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
           IV +R + +TPT+    PP+ E SN V R+Y D  D  +RV F DEG + +N   +  F 
Sbjct: 376 IVMIRTVTVTPTRVLVGPPQPETSNSVTRRYSDKLDAIIRVHFTDEG-ERLN---VQKFT 431

Query: 470 APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGK 529
            P       +    +  +  RVR  L  G  + G ++  +A S SQ +D + WF      
Sbjct: 432 KPA------DDACPEKGLMARVRRALQYGIEVAGCRYYPVASSGSQQKDHNMWFIDH--- 482

Query: 530 TSVLD---IKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVF 586
            +V+D   + +WMG+  ++ +AK AAR+G    S              +L D+ RNG+ F
Sbjct: 483 -TVIDRPELSRWMGQVKEQVVAKHAARLGLVTVS--------------DLADVFRNGHCF 527

Query: 587 SDGIGKITPDLAMEVAQKL--KLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRES 644
           +DG G    D+  + A+ +  K      P A Q R  G KGV+A WP       + +R S
Sbjct: 528 TDGCGVAGIDVMRQAARSMNNKRKTGEAPSALQFRLGGAKGVLAYWPGMAGNDEILMRPS 587

Query: 645 MNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSM---QDSMLSKLNQML 701
             KF+S    L +    ++Q  FLNRQ I ++S   VPD +F  +       +  L +  
Sbjct: 588 QTKFESRLKELNVVRIAKYQSAFLNRQFINIMSACGVPDALFEQLFVEATQAIEGLPERA 647

Query: 702 VDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761
           V  D+  + L             ++ AGF     P ++ +   + A  L  L+ +AR+ +
Sbjct: 648 VLRDLTKDDLVLFQQYTEFPMVQVIDAGF--ARNPMIQDLARLVEARALQDLKWRARVKL 705

Query: 762 PAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNP 821
             G +L+G  DE G+L+ G+ F+Q               +  E  +  V+ G VV+ + P
Sbjct: 706 DMGVYLIGVADETGLLKEGEVFVQY--------------QVTENDEPVVVTGAVVVCRAP 751

Query: 822 CLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTN 858
            LHPGD+R   AVDHP+L HL + +VF  KG RP  N
Sbjct: 752 ALHPGDVRTARAVDHPQLRHLKNVVVFSIKGARPLPN 788



 Score = 47.4 bits (111), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 96/227 (42%), Gaps = 52/227 (22%)

Query: 910  EFFAKHMVNEN--------LGTICNAHVVH---------ADHSEYGALDENCILLAELAA 952
            E F ++ V EN           +C A  +H          DH +   L +N ++ +   A
Sbjct: 725  EVFVQYQVTENDEPVVVTGAVVVCRAPALHPGDVRTARAVDHPQLRHL-KNVVVFSIKGA 783

Query: 953  ----TAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDI 1008
                  VDF KT     +   L+P+ +PDFMGK    +YKS K+LG L+R+         
Sbjct: 784  RPLPNIVDFAKT----ELTTELRPEKWPDFMGK----TYKSKKVLGVLFRR--------- 826

Query: 1009 SVSSEVDINPVDIH---YDTDLEV---PESVDFIADAWNQKCSYDGQLNGLLEQYKVNRE 1062
             V ++    P DI    YD +  +   P+  D        K  Y+  ++  + ++    E
Sbjct: 827  -VQADPKFEPSDIRRSAYDPEHWLWGHPQYHDIYTRLMAVKAGYECDMHYAMRRFSAT-E 884

Query: 1063 EELVTGHI-WSMPKYNSRKQGELKERLKHSYSAL----RKEFRQVFE 1104
             E+V+G + +   +  SR   E+ E LK  Y  +    R++ R+  E
Sbjct: 885  LEIVSGIVTYHKQRKTSRDITEVSESLKDHYEHITNLCREQARKCLE 931


>gi|340960580|gb|EGS21761.1| hypothetical protein CTHT_0036280 [Chaetomium thermophilum var.
           thermophilum DSM 1495]
          Length = 1520

 Score =  200 bits (508), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 213/430 (49%), Gaps = 35/430 (8%)

Query: 551 AARMGQCFSSTYATVEVPPTEVDPELPDIKR-NGYVFSDGIGKITPDLAMEVAQKLKL-- 607
           A R+G  FS+      +PP  V+ ++PDI+  +GYVF+DG G I+P LA ++A++L +  
Sbjct: 2   AKRIGLLFSTARVAKVIPPDRVE-DIPDIESPDGYVFTDGCGLISPHLAQDLARRLGIVF 60

Query: 608 -DVNPPPCAYQIRYAGCKGVVACWPAKGDGIR--MSLRESMNKFQSHHT-TLEICSWTR- 662
            D    P   QIRY G KGVV   P      R  + +R+SM KF      +  +  +++ 
Sbjct: 61  RDRRYTPSVLQIRYRGYKGVVTVDPRMTSDPRILLRMRKSMKKFSGGDDHSFSVVEYSKP 120

Query: 663 FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTA 722
           F  GFLN ++I LL+ L V  E+    QD+    L     D   AF  L+       + A
Sbjct: 121 FTYGFLNDEVIVLLNALGVDREIIKKKQDNHFKFLADASRDPRSAFRFLSGL--NMPDLA 178

Query: 723 AIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLRE-KARIFVPAGRWLMGCLDELGVLEGGQ 781
             +L   F+    P +R ++    A  L    E K RI +P  R L G  D  GVL+ G+
Sbjct: 179 ESVLVESFDA-IRPRIRSLVKNEYAKMLNKREEQKCRILIPKSRLLFGVCDAWGVLKEGE 237

Query: 782 CFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHH 841
           C ++++         ++G   A  K  +V+     + +NPCLHPGD++    V+ PEL H
Sbjct: 238 CAVKIT-------LEENGLPMA-LKNCEVL-----VTRNPCLHPGDLQKFRVVERPELSH 284

Query: 842 LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR 901
           L DC+VF  KG RP  +  SG DLDGD +FV WD +LIP  K    P +Y   +      
Sbjct: 285 LVDCIVFSTKGKRPAADMMSGGDLDGDTFFVCWDLDLIP--KTLSQPAKYPGVKEPIRFT 342

Query: 902 PVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
           P+   D +EFF ++  N +LG + N ++  A     G +   C  L  L +  VD    G
Sbjct: 343 PITDDDRLEFFVRY-TNASLGRVKNLYLDWARAG--GPMSPECQELNRLFSQCVD----G 395

Query: 962 KIVTMPAHLK 971
             + +P  L+
Sbjct: 396 NRIKIPPRLE 405


>gi|389751599|gb|EIM92672.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
          Length = 1228

 Score =  199 bits (506), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 194/644 (30%), Positives = 303/644 (47%), Gaps = 80/644 (12%)

Query: 398  PELYKGPKQID-DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEG 456
            PE+   P   D  + E   + +TPT      P  E SNRV+R Y    D FLRV+FMDE 
Sbjct: 405  PEIPPSPFLNDPGVFESFHIAVTPTIMALEGPLPERSNRVMRMYPKDHDCFLRVSFMDEN 464

Query: 457  LQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQL 516
                 +N          RDI    F     +   +  IL  G  + GRKF FL +S S L
Sbjct: 465  RLQYRSN----------RDIDGPLF-----INSWITRILHEGMVVAGRKFRFLGYSQSAL 509

Query: 517  RDCSAWFFSEDGKTSVL---DIKKWMGRFT----DKNIAKCAARMG----QCFSSTYATV 565
            +  + WF  +D +   L   +I + +G+F     D+ +  C AR G    Q F++T  ++
Sbjct: 510  KSHTVWFVLDDPERPELRVENIIRGLGQFDNLKYDRQLIYCPARYGARISQAFTATDPSI 569

Query: 566  EVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLK-------LDVNPPPCAYQI 618
             V   EV   L DIKR  + F++G+G ++  +A  +++ LK         +   P A+Q+
Sbjct: 570  VVRAEEVF-LLEDIKRGQWCFTEGVGTLSRAMAKAISKTLKDSGKRAFRRLTTHPGAFQV 628

Query: 619  RYAGCKGVVACWP-AKGDGIRMSLRESMNKFQSHHTT-LEIC-SWTRFQPGFLNRQIITL 675
            R+ G KGVV   P  +G+ I   +R SM KF++  +  +EI  ++ R    +LNR +I +
Sbjct: 629  RFQGSKGVVTVDPRLRGNAI--CVRPSMIKFEAPESLDVEIAQAFDRPSKYYLNRPLIMI 686

Query: 676  LSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTA-ACAEQGNTAAIMLS-AGFNPQ 733
            L  L VP  +F  +Q   ++++++         E++ A          +I LS +  + +
Sbjct: 687  LEALGVPYRVFDRLQTRAITQVHKASRSLRGLAEIMEAYGLGTSYRLPSIFLSLSKLHVE 746

Query: 734  TEP-----HLRGMLTCIRAAQLWGLREKARIFVPAGRW-LMGCLDELGVLEGGQCFIQVS 787
              P     H     T      L  L+  ARI +    W L+G  D  G L   + +  + 
Sbjct: 747  APPDDSFFHRVNDFTVHHI--LRDLKHHARIPLDRHGWTLVGVADIHGWLREKEVYAYIR 804

Query: 788  EPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE-----LHHL 842
             P  G  F               ++G V+++++P +HPGD+++L AV  P         L
Sbjct: 805  LPD-GEAF--------------YLEGRVMVSRSPTIHPGDVQVLTAVKPPHGSIYLREPL 849

Query: 843  YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRP 902
             + LVF  +G RP      G DLDGDLY VT    L+PP  K++ P  Y+ A  + L R 
Sbjct: 850  ANTLVFSIQGTRPVYTGLGGGDLDGDLYNVTTLRELMPP--KNYHPANYDPAVKRILDRR 907

Query: 903  VDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGK 962
                DI +F A ++ ++ +G +    ++ AD S  G  D +C+ L EL + AVD+PK+G 
Sbjct: 908  STIHDIADFVADYINSDIIGLVAINWLIIADQSPQGIFDPDCLSLCELHSNAVDYPKSGN 967

Query: 963  IVTMPA--HLKPKLYPDFMG------KEAYQSYKSNKILGRLYR 998
             V+  A   LK    PD+        K+    Y+S K +GRL+R
Sbjct: 968  PVSAKAIPFLKFSAKPDWNAPETVDLKDTANYYQSEKAIGRLFR 1011


>gi|302690464|ref|XP_003034911.1| hypothetical protein SCHCODRAFT_255915 [Schizophyllum commune H4-8]
 gi|300108607|gb|EFJ00009.1| hypothetical protein SCHCODRAFT_255915 [Schizophyllum commune H4-8]
          Length = 1237

 Score =  199 bits (505), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 186/653 (28%), Positives = 296/653 (45%), Gaps = 93/653 (14%)

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475
            ++ TPT+     P    SNR++R+Y      F+RV F DE       + L+Y       D
Sbjct: 433  IIFTPTRTVLEGPYPVQSNRIIRRYPGYEHHFIRVEFRDE-------DRLAYRW-----D 480

Query: 476  ITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE-----DGKT 530
             T++  SQ  R  +RV  IL+ GF L GR F FLA+S+S LR+ S W+ +E      G  
Sbjct: 481  RTVDG-SQFVR--ERVGGILANGFKLGGRSFVFLAYSTSALREHSVWYLNEFYHEELGYC 537

Query: 531  SVLD-IKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTE------VDPELPDIKR-N 582
               D I+  +G F + +    AAR+ Q F++T  +V++   E      + P  P  KR +
Sbjct: 538  ITADYIRDSIGHFPEDS-KLYAARLAQAFTATEPSVKIRRDEWEEMEDLSPPPPPGKRVS 596

Query: 583  GYVFSDGIGKITPDLAMEVAQKLKLD--------VNPPPCAY---QIRYAGCKGVVAC-- 629
             Y+F+DG+G I+  L   +  KL  +        V    C     +IR+ G KG+VA   
Sbjct: 597  PYLFTDGVGTISRSLGDRIWGKLISERGGDLTQAVAAGRCGSISGRIRFLGYKGMVAVDE 656

Query: 630  -WPAKGDGIRMSLRESMNKFQSHH-----TTLEICSWTRFQPG-FLNRQIITLLSTLNVP 682
                   GI M LR SM KF S         +EI     +    F N+ ++T+L  L V 
Sbjct: 657  EMDKDNTGIHMRLRPSMRKFDSKEEDMWEADIEIARHFAYPNNMFTNKALVTVLENLGVG 716

Query: 683  DEMFWSMQDSMLSKLNQMLVDSDVAFEVL------------------TAACAEQGNTAAI 724
             + F  +Q S ++ + ++  D D   +VL                   A   E   T + 
Sbjct: 717  CDQFEKLQQSAVASVERIHDDIDAWRDVLRSNNLCRTFRLAHILDNFVAMGLEMKGTPSR 776

Query: 725  MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI 784
               A       P  + +    R A L  ++  AR  +P    L+G  DE      G  +I
Sbjct: 777  PRRAPLPGFDSPFFKKIREVARMAILRDIKHDARFGIPDSYKLVGIADE------GPAYI 830

Query: 785  QVSEP---FLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP---- 837
            +  +     LG+       +  E +    ++G  +I+++P  H GD++ + A+  P    
Sbjct: 831  KAGKENVYCLGDREIYACVQRTEGEDPVWLEGNCIISRSPVTHVGDVQRVHAIGRPPADM 890

Query: 838  --ELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAE 895
                  L + +V P  GDR   +  SG DLDGDLY +   E+L+   ++   P++++  E
Sbjct: 891  LSSFGKLKNLVVLPSVGDRSLCSMLSGGDLDGDLYDIIMCEDLLYSQQEK--PLDFDPGE 948

Query: 896  AKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAV 955
               L RP    DI  F  +++ ++ +G + +  +V AD S+ G  DE+C+ +A+L + AV
Sbjct: 949  TFQLNRPATVDDICNFIVEYINSDVVGLLSDRLLVIADQSKNGIFDEDCVKIAKLCSQAV 1008

Query: 956  DFPKTGKIVTMPAHLKP----KLYPDFMGKEAYQS-----YKSNKILGRLYRQ 999
            D+PK G  V +     P    +  PD+   E  +      Y+S+K LGRLYR 
Sbjct: 1009 DYPKQGIPVDLENGNLPRPLMRQKPDWHAAEVIRPRDNDYYRSDKALGRLYRN 1061


>gi|393244712|gb|EJD52224.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
          Length = 1061

 Score =  198 bits (503), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 210/757 (27%), Positives = 337/757 (44%), Gaps = 116/757 (15%)

Query: 328  ISFEIMFLVNAVMHKGIINQH----QLSDSFFDLLRGQSREVNVAALKHIYSYKW----- 378
            I F + F + A++  G+ +      QL     DLLR    E+  + + H++         
Sbjct: 165  IDFRVAFQLQALVSNGVTDPTTLLVQLQPPLDDLLRLYEPEL-CSGILHVFRTNLTQKLQ 223

Query: 379  --PVFDACKRLK-LVQEWLLKDPELYKGPKQIDD--------IVEVRRLVITPTKAYCLP 427
               V   C +L+ L+ E +    E  +  ++I+         ++    LV+TP+  +   
Sbjct: 224  LGAVEADCTKLRVLLAEAVNSHLEQTRRMQEIEQSGKLSSPSVLFSHHLVVTPSGLHLEG 283

Query: 428  PEVELSNRVLRKYKDLADRFLRVTFMDEG-LQTMNANVLSYFIAPIVRDITLNSFSQKTR 486
            P+   SNRVLR Y      FLRV F +E  LQ         F  P  RD+   SF     
Sbjct: 284  PDPNKSNRVLRHYDQYTQFFLRVRFANEDRLQ---------FRWP--RDVDGESF----- 327

Query: 487  VFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS------EDGKTSVLDIKKWMG 540
            V++RV  IL  G  + GRKF FL +S S L   SAWF +      E G    + +     
Sbjct: 328  VYERVGGILKNGIEVAGRKFQFLGYSLSSLHQYSAWFVTDFYAEVEPGSGHRVRVTPQYI 387

Query: 541  RFTDKNIAKC-------AARMGQCFSSTYATVEVPPTEVDPELPDIK-RNGYVFSDGIGK 592
            R    N AK         ARM Q FS+T  T+ +   E++  +PDI+   G + SDG G 
Sbjct: 388  RDHLGNFAKVIDCPSLYGARMAQAFSATDPTITLADGEIEYNVPDIRTETGELMSDGCGT 447

Query: 593  ITPDLAMEVAQ-----KLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNK 647
            I+P+L++E+ +     + + +      AYQIR  G KGVV   P + +G ++ LR SM K
Sbjct: 448  ISPELSLEMNEQRIHGRTRAEWEKVVNAYQIRVGGAKGVVGVDP-RLEGRKLRLRVSMIK 506

Query: 648  FQSHHTT-LEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQ-----------DSM-- 693
            F + H+T +E+ +  R    +LNR +I  L TL V   +F ++Q           DS+  
Sbjct: 507  FDALHSTDVEVANIARPARMYLNRPLIMTLETLGVRRHVFETLQANVVRTAHEAGDSIRR 566

Query: 694  ----LSKLNQMLVDSDVAFEVLTAACA---EQGNTAAIMLSAGFNPQTEPHLRGMLTCIR 746
                + KL        V  +++   C    +   T  ++L   F       +R ++  + 
Sbjct: 567  FIPNVGKLGDRFQLRFVLEQLVDIGCGFRDDCSETDGVVLDDSF-------VRQLVKSVL 619

Query: 747  AAQLWGLREKARIFVPAGRWLMGCLDELGVLEG-GQCFIQVSEPFLGNCFSKHGSRFAET 805
               L  ++  ARI VP    L+G +DE  +L    +  + V +           S +   
Sbjct: 620  WETLRDVKYSARIQVPESWTLLGKVDEHDILTNEKEVMVYVMD-----------SDYPNG 668

Query: 806  KKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHH-----LYDCLVFPQKGDRPHTNEA 860
            K L+   G  +I ++P +HPGD++++  +  P+        L +C++F  KG R   +  
Sbjct: 669  KWLE---GPALICRSPVMHPGDVQMVTCISPPQGSDPSRCPLINCIIFSAKGTRSLASCL 725

Query: 861  SGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNEN 920
            +G D DGD + ++  E L         P            R     D+ +FF  ++  ++
Sbjct: 726  AGGDYDGDEFHISQYEQLFIKKSAHPAPAPEVVERLYVPERQGTIEDVADFFVDYINRDS 785

Query: 921  LGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT---MPAHLKPKLYPD 977
            +G +   H++ AD ++ G     C+ LAE+ + AVDFPKTG  V    MPA L+    PD
Sbjct: 786  VGLLARQHLIIADQNDRGVKAPKCLTLAEMYSRAVDFPKTGIPVPPRDMPA-LEFDAKPD 844

Query: 978  FMGK------EAYQSYKSNKILGRLYRQSKDAYDEDI 1008
            ++         A   Y+S K LG LYR  ++   ED+
Sbjct: 845  WITNEVAAEEAAGAVYRSTKALGHLYRAVEERQFEDL 881


>gi|171681273|ref|XP_001905580.1| hypothetical protein [Podospora anserina S mat+]
 gi|170940595|emb|CAP65823.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1721

 Score =  198 bits (503), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 155/543 (28%), Positives = 261/543 (48%), Gaps = 59/543 (10%)

Query: 494  ILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS---EDGKTSVLDIKKWMGRFTD-KNIAK 549
            +L  G  + G  ++F   S+SQL+  + +F++   E+    V D    +G F+  K +AK
Sbjct: 125  LLRTGISIQGVHYNFYGHSNSQLKSRTCFFYAGSPEEISRKVND----LGDFSKMKTVAK 180

Query: 550  CAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL-- 607
             A R+   FS+    + +PP  V+ ++PDI+   Y+F+DG G I+P+LA E+A++ ++  
Sbjct: 181  KAKRISLLFSTGSVAMLIPPERVE-DIPDIETADYIFTDGCGLISPNLARELARRDRIIF 239

Query: 608  -DVNPPPCAYQIRYAGCKGVVAC---------WPAKGDGIRMSLRESMNKFQSHHT-TLE 656
             +    P  +QIRY G KGVV             +    I + LR+SM KF      +  
Sbjct: 240  RNRRYTPSVFQIRYRGYKGVVEVDQTMPRPKNKSSDAPPIWLKLRKSMKKFSGGDDYSFS 299

Query: 657  ICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAAC 715
            +  +++ +  G+LN + I LLS L +  + F   Q+     L +   D   AF  L+ A 
Sbjct: 300  VVEYSKPYTYGYLNDESILLLSALGITHKTFHQKQNEHFQFLEEATRDPRAAFRFLSYAN 359

Query: 716  AEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLR--EKARIFVPAGRWLMGCLDE 773
              +   A  +L A      +  ++ ++      ++   R  +K RI +P  R L G  D 
Sbjct: 360  MPE--MAEKILMADNVEHAQSKVKALVKA-EYGKMLNKRDDQKCRILIPQSRLLFGVCDA 416

Query: 774  LGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILE 832
               L+ G+C ++V+                E  +   +KG  V++ +NPCLHPGD++   
Sbjct: 417  WDCLKEGECAVKVT--------------LFEDGQPAALKGMEVLVTRNPCLHPGDMQKFR 462

Query: 833  AVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYN 892
             V+ PEL HL DC+VF  +G RP  +  SG DLDGD +FV WD+++IP +     P +Y 
Sbjct: 463  VVERPELAHLTDCIVFSSRGRRPAADLMSGGDLDGDTFFVCWDKSVIPSTMSE--PAKYP 520

Query: 893  AAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAA 952
             A      + +   D + +FAK+  N +LG +   ++  A     G +   C  L  L +
Sbjct: 521  GAREAISFKAITDDDRLVYFAKYN-NMSLGRVKKLYLAWA--RARGPMAPECQELNRLFS 577

Query: 953  TAVDFPKTGKIVTMPAHLKP-----KLYPDFMGKEAYQSYKSN--KILGRLYRQSKDAYD 1005
              VD    G I+ +P  L+      +  P F+  + +++ K    K   +++R   D YD
Sbjct: 578  QCVD----GTIIRIPPKLEQAPDPPRDAPPFILDDLHEAAKQIILKDTAQIHRNVFDGYD 633

Query: 1006 EDI 1008
             D+
Sbjct: 634  HDV 636


>gi|409051493|gb|EKM60969.1| hypothetical protein PHACADRAFT_168316 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 968

 Score =  196 bits (498), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 188/674 (27%), Positives = 306/674 (45%), Gaps = 96/674 (14%)

Query: 294 VQVDSLSRPITIRE--EPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQ-- 349
           VQVD    P+  RE   PD +           + +G+ + + F V A++   +I+  +  
Sbjct: 302 VQVDDYLYPVEYRELFAPDVQESYKA------WVKGLPWRVAFQVEALVRSILIDMKEAL 355

Query: 350 -LSDSFFDLLRGQSREVNVAALKH------IYSYK----------WPVFDACKRLKLVQE 392
            L      +LR +        L+H      ++ Y             +F  C+R     E
Sbjct: 356 GLRAKISRMLRAKGEAHAALFLRHFATQAKMFGYTDDSHSPTESITDLFSRCER-----E 410

Query: 393 WLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTF 452
           +     +  +GP  +D   +   + +TPT      P  E SNRV+R Y +  D F+RV F
Sbjct: 411 YAPVKRKRLRGPPNLDTF-DCLHVTVTPTTHRPEGPYPERSNRVMRTYSNNHDCFVRVNF 469

Query: 453 MDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFS 512
           +DE       +          R++   +F     + +RV  +L+ G  + GR F FLA+S
Sbjct: 470 VDETDLQFRFD----------REVDGRAF-----IKRRVGEVLANGIVVAGRYFEFLAYS 514

Query: 513 SSQLRDCSAWFFSE----DGKT-SVLDIKKWMGRFT-DKNIAKCAARMG----QCFSSTY 562
            S L++ + WF  E    DG   +   I   +G FT D+ +  C AR G    Q F++T 
Sbjct: 515 QSALKEHAVWFVKEFLLPDGTVVNACTIIAGLGDFTRDRQLIYCPARYGARISQAFTATD 574

Query: 563 ATVEVPPTEVDPELPDIK--RNGYVFSDGIGKITPDLAMEV-----AQKLKLDVNPPPCA 615
           ++V V   EV  E+PDI+     + F+DG+G ++  LA E+     A++        P A
Sbjct: 575 SSVTVEAEEVI-EVPDIEDPTGTWCFTDGVGTMSVRLAREIWKVLAARRRGSRWQTYPRA 633

Query: 616 YQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTT-LEIC-SWTRFQPGFLNRQII 673
            QIR+ G KG+++       G  + LR SM KF++ ++  +E+  ++ R  P +LNR +I
Sbjct: 634 LQIRFQGSKGMLSV-DHTLSGRAICLRPSMIKFEALNSNQIEVARAFNRPGPFYLNRPLI 692

Query: 674 TLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL-TAACAEQGNTAAIMLSA---G 729
            +L  L V  E+F  +QD+ +    Q +   + A  +L T          ++ LS     
Sbjct: 693 MILEHLGVQHEVFQDLQDAAVMDAQQSVESLEKAARLLETFGLGASFRLTSVFLSLHKLA 752

Query: 730 FNPQTEPHL-RGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSE 788
             P TE +  R M+       L  L+  ARI VP    L+G  D  G LE  + F     
Sbjct: 753 VGPLTEDNFWRKMMDFAVNHVLRELKHHARIPVPNAWNLVGVADVHGYLEEHEVF----- 807

Query: 789 PFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP------ELHHL 842
              G  +   G+          + G V++ ++P +HPGD+++++ +  P      E   L
Sbjct: 808 ---GCIYPTDGT------GPIYLDGRVLVTRSPTIHPGDVQVVQGIGRPPPGSPFERESL 858

Query: 843 YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRP 902
            + LVF  KG RP  +   G DLDGD Y VT  + L+PP  +++ P  Y  AE K L RP
Sbjct: 859 RNTLVFSVKGTRPLPSYLGGGDLDGDEYRVTMLDPLLPP--RTYLPASYTPAEKKLLDRP 916

Query: 903 VDQRDIIEFFAKHM 916
              +D+ +F  +++
Sbjct: 917 STMKDVADFVMEYI 930


>gi|393247227|gb|EJD54735.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
          Length = 1217

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 206/754 (27%), Positives = 322/754 (42%), Gaps = 144/754 (19%)

Query: 418  ITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDIT 477
            ++P     + P  +  NRVL +Y+   + F+RV F+D   Q            P   D  
Sbjct: 399  VSPANVSIIGPIPDDLNRVLYQYRAYHENFIRVAFVDNDGQ------------PFRYDPD 446

Query: 478  LNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDC--SAW----FFSEDGKT- 530
            +N+   +  V   V  IL  G  L GR F FLA+S S L+      W    F    G T 
Sbjct: 447  VNT---QALVDAHVLPILRDGLTLGGRLFKFLAYSQSGLKQHWEQVWLVHTFTDALGHTH 503

Query: 531  SVLDIKKWMGRFT--DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYV-FS 587
            S   I+  +G FT  ++  A+  ARM   FS+T  +  +    +   LPDI  +G+   +
Sbjct: 504  SASTIRASLGTFTKDERCPARVGARMSLAFSATVPSGSLSVARLR-NLPDIGGDGHTCMT 562

Query: 588  DGIGKITPDLAMEVA----------QKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGI 637
            DG G I+   AM+ A          +    ++ P P   Q+R  G KGV+   P    G+
Sbjct: 563  DGAGLIS-RAAMDRAWIHFCAARGRRGRTAELPPAPSVIQVRVKGAKGVLLVDPTL-QGL 620

Query: 638  RMSLRESMNKFQS--HHTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSML 694
            R+ +R SM KF +   +  +EIC ++T     FLNR +I +L    VP E F  +Q  ++
Sbjct: 621  RIVVRPSMVKFSAGEQYDNIEICNAFTAPSRAFLNRPLIMVLEARGVPKETFLWLQQQVV 680

Query: 695  SKLNQMLVDSDVAFEVL--TAACAEQGNTAAIM--LSAGFN--PQTEPHLRG----MLTC 744
            ++  Q+ V S +    L  +    E  N   ++  +++ F   P+ E HL      M  C
Sbjct: 681  AE-TQLAVQSLLPAAALLESNGLGESLNLPTLLRRIASRFANFPEVEQHLVAEDAFMTRC 739

Query: 745  IRAAQ---LWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSR 801
            +  A    L GL+ + RI VP    L+G  D  G+LE G+  + + +             
Sbjct: 740  LDFAVNHVLRGLKFRGRIPVPDSWTLVGVPDHHGILEEGEVLVGIMD------------- 786

Query: 802  FAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP------ELHHLYDCLVFPQKGDRP 855
              +  +L+ +KG V + ++P  HPGD+ ++ A+  P      EL    +C+VF  KG R 
Sbjct: 787  -GDPLRLRYLKGGVTVTRSPVCHPGDVMVMRAIGPPRAGSAFELLRPKNCIVFSTKGSRS 845

Query: 856  HTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKH 915
              +   G D DGD Y V     + PP   +  P  Y  +  + + R   + D+++     
Sbjct: 846  PVSCLGGGDYDGDEYVVMKPAYMRPPEPAA--PAMYKNSPRQDIGRRYRKEDLLKVVPDF 903

Query: 916  MVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG---KIVTMPAHLKP 972
            + N+ L  I    +  AD S  G  D  C+ L+ L + AVDFPKTG   K   +P    P
Sbjct: 904  INNDQLPRIAATWLRIADISPQGVYDPRCLKLSALHSIAVDFPKTGIPVKHADIPQ--AP 961

Query: 973  KLYPDFMGKEAYQS----------YKSNKILGRLYRQ----------------------- 999
             ++PD+   E   +          Y S++ LG LYR                        
Sbjct: 962  NMFPDWSMSELGAADHNKSFMDRIYPSDRALGHLYRAISLPAVGEARTEGRAQREAAKAR 1021

Query: 1000 ---SKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYD--GQLNGLL 1054
               +  A +E ++  +E+  +P+    D      + V  IA   +++C+ D    L  LL
Sbjct: 1022 RKLTHSAAEEGLASGAELLAHPMLPAVD------QLVSTIAPQASEECARDELSDLVQLL 1075

Query: 1055 EQYKVN------------------REEELVTGHI 1070
             QY V+                   EEELVTG I
Sbjct: 1076 NQYCVDLRLVCQQNTLSRSRRAQLTEEELVTGTI 1109


>gi|46133873|ref|XP_389252.1| hypothetical protein FG09076.1 [Gibberella zeae PH-1]
          Length = 1721

 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 161/542 (29%), Positives = 245/542 (45%), Gaps = 64/542 (11%)

Query: 495  LSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAAR 553
            L  G  + G  ++F   S+SQL+  S +  +   +     I+  +G FT  K + K A R
Sbjct: 123  LRAGISINGVHYNFYGHSNSQLKSRSCFLLAATKEGISRQIES-LGDFTKMKTVGKKAKR 181

Query: 554  MGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL---DVN 610
            +G  FSS    + + P   + ++PD++   Y+F+DG G I P LA E++++ ++   D  
Sbjct: 182  IGLLFSSAKTAMTINPDRCE-DIPDVETADYIFTDGCGLIAPSLAQELSRRTRIIFRDTR 240

Query: 611  PPPCAYQIRYAGCKGVVAC-WPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLN 669
              P  +QIRY G KGVV      K     +  R+SM KF          S+  F  GFLN
Sbjct: 241  YTPSVFQIRYRGYKGVVTVDTRMKKQKALLKFRKSMKKFSGGDDH----SFAPFSYGFLN 296

Query: 670  RQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAG 729
             + I LL  L +  E   + Q      L     D   AF +L+ +   + + A  +L  G
Sbjct: 297  DETIILLHALGISQETLLAKQRRHFDLLRNAKTDHRDAFRLLSYS--NRPDLAERVLLDG 354

Query: 730  FNPQTEPHLRGMLTCIRAAQLWGLREK-----ARIFVPAGRWLMGCLDELGVLEGGQCFI 784
             +      ++  +  I  A+L  +  K      RIFV   R L G  D   VL  G+  +
Sbjct: 355  SD-----SIKPQINSIVNAELKKMLNKKDGQRCRIFVQKSRLLFGVCDAWDVLREGEVAV 409

Query: 785  QVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD 844
            +V+    G     H  +  E          V + +NPCLHPGD +  + V+ PEL HL D
Sbjct: 410  KVTMEETG---VPHALKNTE----------VTVIRNPCLHPGDWQKFKVVERPELAHLTD 456

Query: 845  CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVD 904
            C+VF  +G RP  +  SG DLDGD +FV WD +LIP +  +  P  Y         RP+ 
Sbjct: 457  CIVFSTRGKRPAADMMSGGDLDGDTFFVCWDPDLIPSTIST--PALYPGGRDPITFRPIT 514

Query: 905  QRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIV 964
              D + +FAK+  N +LG + N ++  A  +  G +   C  L  L +  VD    G  +
Sbjct: 515  DDDRLVYFAKYN-NASLGKVKNLYLDWARAT--GPMSAQCQELNRLFSQCVD----GNRI 567

Query: 965  TMPAHLK-----PKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPV 1019
             +P  L+     P   P F             IL  L+ +S+D     +S+S   D++  
Sbjct: 568  RIPEKLQSPPKSPDDAPPF-------------ILDILHSESRDQA-HSLSLSQNGDLDGY 613

Query: 1020 DI 1021
            DI
Sbjct: 614  DI 615


>gi|393235346|gb|EJD42902.1| RNA-directed RNA polymerase [Auricularia delicata TFB-10046 SS5]
          Length = 1654

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 148/494 (29%), Positives = 238/494 (48%), Gaps = 43/494 (8%)

Query: 491 VRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKW-MGRFTD-KNIA 548
           ++  L+ G +L  R++ F   S SQLR+    F  E      LD + +  G F+   N+A
Sbjct: 80  IKRFLAAGLFLDDRQYRFYHHSPSQLRE-RGCFLREAASDEELDARIYSYGDFSRINNVA 138

Query: 549 KCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL- 607
           K A R+G  FS       + P +   ++ DI     +FSDG G ++  LA+ ++++ K+ 
Sbjct: 139 KRAKRIGLLFSGASIDYNLDP-QFTEDIDDIIVGNELFSDGCGLVSRRLAVALSRQKKIV 197

Query: 608 --DVNPPPCAYQIRYAGCKGVVACWPA--KGDGIRMSLRESMNKFQSH-HTTLEICSW-T 661
                  P  +QIRY G KGV+   P   +  G     R SM KF +    T  +  + T
Sbjct: 198 FRGARYTPSVFQIRYRGYKGVLMLHPELDRSHGPLAQFRRSMKKFNATLDDTFTVVGYST 257

Query: 662 RFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNT 721
            +  G LN  +I L+S+L + +E   + Q      L + + D   A ++L+  C      
Sbjct: 258 PYAFGRLNNDVIVLISSLGITNETLLAKQAEYFDWLLRAVSDVSCAVDLLS--CLGDFAM 315

Query: 722 AAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLRE-----KARIFVPAGRWLMGCLDELGV 776
           A  +L  G +     H++  L  I + ++   R+     ++R+ +   R L G  D  GV
Sbjct: 316 AERVLLDGLDAD---HVQKALAGIVSREVKSFRKDNGRLRSRMIIRKSRLLFGVCDPFGV 372

Query: 777 LEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDH 836
           L  G+  ++VS           G + A T    +    V++ KNPCLHPGD+  L AV++
Sbjct: 373 LREGEVHVRVSA----------GRQPATT----LTHCDVLVVKNPCLHPGDVLKLHAVEN 418

Query: 837 PELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEA 896
           P L HL DC+VFP  G R   +  SGSDLDGD +FV WD ++IP   K+  P  Y   + 
Sbjct: 419 PRLAHLVDCVVFPSVGKRAPASMTSGSDLDGDQFFVCWDSDIIP--SKTTDPYLYPKGKE 476

Query: 897 KTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVD 956
           + ++R + ++D+   FA +    ++  +   H   A HS+ GA+   C+ L+ L + AVD
Sbjct: 477 Q-ISRSISRQDLAAHFAAYS-GASIAKVAGLHSKWARHSQQGAMCTECLELSALHSLAVD 534

Query: 957 FPKTGKIVTMPAHL 970
               G  + +P  L
Sbjct: 535 ----GGKIKVPKRL 544


>gi|389741441|gb|EIM82629.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
          Length = 1527

 Score =  192 bits (489), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 160/543 (29%), Positives = 251/543 (46%), Gaps = 61/543 (11%)

Query: 497  GGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMG 555
             G +L G ++ F   S+SQLR    +    +    +  +    G F    N+AK A R+G
Sbjct: 46   AGLFLNGVQYRFYGHSNSQLRSGGCFLRRANSDEELDQVVYAKGDFGKIMNVAKRAKRIG 105

Query: 556  QCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNP---P 612
              FS       + P +   ++ D+K    VFSDG G I+  L++++++K  +  N     
Sbjct: 106  LLFSGAEVDYMLDP-QYTGDIDDLKIGDEVFSDGCGLISRWLSVQISKKKGIVHNRRRYT 164

Query: 613  PCAYQIRYAGCKGVVACWPAKGDGIRM---SLRESMNKFQSHHTTL-EICSWTRFQP-GF 667
            PC +QIRY G KGV    P   D  ++     R+S  KF +    +  I  +++    G 
Sbjct: 165  PCVFQIRYRGYKGVQMLHPPL-DAAKIHQAEFRKSQKKFTATDDMIFSIVDYSKPHTFGR 223

Query: 668  LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLS 727
            LN +I  LLS+L V ++ F ++Q      + +   D   AFE+ +     + + A  +L 
Sbjct: 224  LNNEITILLSSLGVTNDDFVALQQEYFDWVQRASSDPVHAFELFSTLG--KHDIAERVLL 281

Query: 728  AGFNPQTEPHLRGMLTCIRAAQLWGL-------REKARIFVPAGRWLMGCLDELGVLEGG 780
             G +    P +   +   +AA++          +E+ R+ +   R L G  D  GVL+ G
Sbjct: 282  DGLD---SPTIVKQIRSAQAAEIQAFHKEGDATKERVRMLIRKSRRLFGVCDPFGVLKEG 338

Query: 781  QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH 840
            Q  ++++    G     H                V++ +NPCLHPGDI  L AVDHP+L 
Sbjct: 339  QVHVRITVSRAGASTINHLD--------------VIVVRNPCLHPGDILKLRAVDHPQLS 384

Query: 841  HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLT 900
            HL DC+VFP  G R   + +SG DLDGD YFV WD  L+P  KK      Y   +  T  
Sbjct: 385  HLVDCVVFPSVGKRAAPSMSSGGDLDGDEYFVCWDPRLVP--KKISESYTYPPNKEFTQN 442

Query: 901  RPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKT 960
            + + ++D+   FA +  N  +      H   A +   GAL + C  L  L + AVD    
Sbjct: 443  K-ITRQDLARHFASYN-NSGMAKAAKYHNKWARYPPDGALSKECQELNALYSQAVD---- 496

Query: 961  GKIVTMPAHLK--PKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP 1018
            G  V++PA L   P+  PDF             IL  L ++++ A+ E I  ++  +I  
Sbjct: 497  GARVSIPARLTEVPESRPDF-------------ILDVLSQEAR-AFSERIDQTAATNITT 542

Query: 1019 VDI 1021
            VD+
Sbjct: 543  VDL 545


>gi|400596583|gb|EJP64354.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
          Length = 527

 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 145/452 (32%), Positives = 217/452 (48%), Gaps = 75/452 (16%)

Query: 753  LREKARIFVPAGRWLMGCLDELGVLEGG----------------QCFIQVSEPFLGNCFS 796
            ++EK RI +    ++MGC+DE G L G                 Q F+Q+S+   GN   
Sbjct: 1    MKEKCRIQIEKSAFVMGCVDETGTLRGHSIQTEGSRGKNKAVLPQIFLQMSDRKYGN--- 57

Query: 797  KHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPH 856
                      K  +I+G   I +NP LH GDIR++EAVD P L HL D +VFP KGDR  
Sbjct: 58   ----------KTTIIQGVCFIGRNPSLHAGDIRVVEAVDTPCLRHLKDVVVFPSKGDRSL 107

Query: 857  TNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPMEYNAAEAKTLTRPVDQRDIIEFFAK 914
             +  SG DLDGD YFV WD  L+P   K W  PPM       + L R V+  D+  F  K
Sbjct: 108  PSILSGGDLDGDEYFVIWDSTLVP---KIWNSPPMHSTPVTPQDLERGVEVDDLRNFAVK 164

Query: 915  HMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMP-AHLKPK 973
            +M N+ LG +  AH+ HAD    G     C+ LA+L + AVD+ KTG       A  +P 
Sbjct: 165  YMKNDCLGFVAVAHLAHAD--ALGLNHPICLQLAKLHSQAVDYLKTGVPAEWNRARYQPS 222

Query: 974  LYPDFMGKEAYQSYKSNKILGRLY-RQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPES 1032
             +P FM + +  +Y S+K LG+LY R +++ +D   S   E D + +   +D   E+   
Sbjct: 223  KWPHFMQRNSC-TYPSHKALGKLYNRVAEENFDYVPSCEDEFD-SRITQRFDFTDEI--- 277

Query: 1033 VDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSY 1092
               +A A N K  YD  +  LL+Q++V  E EL +G  W+M K       +L+E L   +
Sbjct: 278  ---LASARNLKQQYDVAVRRLLKQFRVATEFELYSG--WAMSKPAVGSDYKLQEDLGQQF 332

Query: 1093 SALRKEFRQV------------FEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVK 1140
              +++ FR++             E++ +    ++EDE         +    + Y P    
Sbjct: 333  DTVKQRFREMCIQEAGIAGGSKLEELVAAIYKVTEDEAKDFLAEAEAEGEALEYSP---- 388

Query: 1141 KSLDLQEQDSARSVVLLSFAWIANDYLARIKI 1172
                       +++ L+SF WI +  L +I +
Sbjct: 389  -----------KAMPLISFPWIFHWVLVKIAM 409


>gi|154273921|ref|XP_001537812.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150415420|gb|EDN10773.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 652

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 141/463 (30%), Positives = 221/463 (47%), Gaps = 77/463 (16%)

Query: 723  AIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQC 782
            A M+  GF    EP +  +L   R  Q+  L+EKA+I +  G +L+GC+DE   L+G   
Sbjct: 25   ADMVRDGFQGSKEPFVSSILELWRTWQIKYLKEKAKIAIDEGAFLLGCIDETKTLKG--- 81

Query: 783  FIQVSEPFLGNCFSKHGS----------RFAETKKLQVIKGFVVIAKNPCLHPGDIRILE 832
            + + S P     + +  +          R +E K + +I+G  ++A+NP LHPGDIR+++
Sbjct: 82   YFRSSRPGQDATYEESVACLPEIFVQVWRHSEGKYV-IIEGVCILARNPSLHPGDIRVVK 140

Query: 833  AVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--PPME 890
            AV+ P LHHL D +V PQ GDR  ++  SG DLDGD Y V WD++++P     W   PM+
Sbjct: 141  AVNAPSLHHLRDVVVLPQTGDRDISSMCSGGDLDGDDYVVIWDQDILP---TDWFHNPMD 197

Query: 891  YNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAEL 950
            Y A + + L R V   DI +F+  +M N+ L  I  AH+  AD+ E G  +E C+ LA L
Sbjct: 198  YAAPKPEVLDRDVTVDDITKFYVNYMQNDRLPQIALAHLALADYMEEGVKNEKCLQLAAL 257

Query: 951  AATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISV 1010
             + AVD+ K+G  V +   LKP+ +P FM ++    Y                       
Sbjct: 258  HSAAVDYNKSGIPVKLTRDLKPRRWPHFMERKMRNKY----------------------- 294

Query: 1011 SSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHI 1070
                                   DF   A N K  YD  +  ++ Q+++  E E+ +  +
Sbjct: 295  ----------------------ADF---ATNLKTQYDADMRRIMAQHEIKTELEVWSTFV 329

Query: 1071 WSMPKYNSRKQGELKERLKHSYSALRKEFR-QVFEKMDS-DCELLSEDEKNALFERKASA 1128
             S  +    K  +  E +    S+LR++FR   +EK+   + E L+     A+++  +  
Sbjct: 330  LSHSEMT--KDYKFHEDIGRISSSLREKFRIMCYEKVGGKEFEHLAP-LAVAMYKVTSEQ 386

Query: 1129 W-YQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARI 1170
            W   V  H +    +   QE    R + L+SF WI    L RI
Sbjct: 387  WEIAVAAHHDVFVDNSHFQE----RKLPLISFPWILQPILGRI 425


>gi|393244711|gb|EJD52223.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
          Length = 1372

 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 193/697 (27%), Positives = 314/697 (45%), Gaps = 103/697 (14%)

Query: 418  ITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDIT 477
            +TP+      P   LSNRVLRKY D  D F+RV F DE       +          R++ 
Sbjct: 579  VTPSGVRLEGPFPVLSNRVLRKYPDHQDCFIRVHFTDEEQYQFRWD----------REVD 628

Query: 478  LNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS----EDGKTSVL 533
              +F     V  RV  +L  G  L GR F FLA+S   L++ + WF +    + GK+   
Sbjct: 629  GVAF-----VRGRVGGVLKQGLELAGRYFEFLAYSFGALKEHTVWFVTPFIDQAGKSVTA 683

Query: 534  D-IKKWMGRFTD--KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDI--KRNGYVFSD 588
            + I+  +G F+    + +   AR+ Q FS+TY +V V  +EV+ ++PDI       V SD
Sbjct: 684  ESIRDSLGDFSKVIYHPSLYGARLSQAFSATYPSVRVEASEVE-QIPDIYDPSGENVMSD 742

Query: 589  GIGKITPDLAMEVAQ-----KLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRE 643
            G    +  LA ++       K + + NP P AYQIR  G KG++   P    G ++ LR 
Sbjct: 743  GCAPCSTQLAKDIDDVLMEGKSRYEYNPVPKAYQIRIGGSKGMIYVDPTL-PGRKLLLRP 801

Query: 644  SMNKFQSHHTT-LEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSK------ 696
            SMNKF +  +  +E+ +  R    +LNR ++ LL  L V    F  +Q+  ++       
Sbjct: 802  SMNKFDAPDSLDIEVSNIPRASHMYLNRPLVMLLEDLGVRLSTFKQLQEDTMAADLDAAR 861

Query: 697  --------LNQMLVDSDVAFEVLTAACAE---------QGNTAAIMLSAGFNPQTEPHLR 739
                    +NQ+ +        +    A+         QG+  +++    ++        
Sbjct: 862  HIGRFIIGMNQIGLGKRFYLSYVLGELADMEFGLRDDCQGDFGSLLDDYWYH-------- 913

Query: 740  GMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHG 799
            G++      Q   ++ +ARI VP    L+G LDE  +L+ GQ    V      N +    
Sbjct: 914  GIVKSTLWDQFRKIKYQARIRVPDSWTLVGVLDEHQILQTGQIMAYVQNEDYPNGY---- 969

Query: 800  SRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP-----ELHHLYDCLVFPQKGDR 854
                       +KG V+I ++P +HPGD++++EAV  P     ++  L +C++F   G R
Sbjct: 970  ----------FLKGPVLICRSPVVHPGDVQMVEAVVPPDGSILDVERLPNCVIFSALGAR 1019

Query: 855  PHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLT-RPVDQRDIIEFFA 913
               +   G DLDGDL+ V+  E      K+ + P  Y   E + L  R     D+ +F  
Sbjct: 1020 SIPSCLGGGDLDGDLFHVS--EYPYFRIKQPYLPAAYPTPERRKLKDREATIDDVADFVV 1077

Query: 914  KHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMP----AH 969
            +++ ++ LG +   H+V AD    G     C+ LAEL +TAVD+ KTG  + +P     H
Sbjct: 1078 EYINSDVLGLVATTHLVIADQHPDGVRAHKCMQLAELHSTAVDYAKTG--IPVPRMRIPH 1135

Query: 970  LKPKLYPDFMGKE-----AYQSYKSNKILGRLYR----QSKDAYDEDISVSSEVDINPVD 1020
             +    PD+   E     +   Y+S + LG LYR     S D  ++++   +       D
Sbjct: 1136 YEFPAKPDWKADEVDDPTSADYYESQRALGHLYRGVGYTSADDLEKNLGKHTR---TAED 1192

Query: 1021 IHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQY 1057
            +  D   ++ E ++   D       +  +L  L +QY
Sbjct: 1193 VDRDISSKIQERIEEHVDLETDPPVFHEELMKLYQQY 1229


>gi|343426952|emb|CBQ70480.1| related to RNA-directed RNA polymerase [Sporisorium reilianum SRZ2]
          Length = 1037

 Score =  190 bits (483), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 194/658 (29%), Positives = 292/658 (44%), Gaps = 100/658 (15%)

Query: 418  ITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDIT 477
            +TPT+     P   +SNRV+R Y    D F R++   E  +       +Y          
Sbjct: 137  LTPTRVLLSGPHWHMSNRVIRSYPGHWDHFARLSITSESREGATTITPNY---------- 186

Query: 478  LNSFSQKTRVFK-RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIK 536
               F    R  + RV  IL  G  + GR+F  LA+SSS +   + WF      T  LD  
Sbjct: 187  --GFDDAERYIRGRVLDILKNGIIVAGRRFQLLAWSSSSMSSHTVWFV-----TPFLDA- 238

Query: 537  KWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPD 596
               GR  D N  +      +   +    +  P    D        NG   +DG+G+I+P 
Sbjct: 239  --TGRLVDANSVR------KSLGNFKDVIRKPAMYAD--------NGQDHTDGVGQISPA 282

Query: 597  LAMEVAQ----------KLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMN 646
            L  +V +          K KL     P A QIR  G KG+++  P +  G  + +R SM+
Sbjct: 283  LMADVWESYLVNHGEFRKRKLLKASAPSAIQIRLGGSKGMLSLNP-RLTGKVLYIRPSMS 341

Query: 647  KFQSHHTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSD 705
            KF S H  LE+  S +R     LNR ++  L    V    F ++QD  +S++ +   + D
Sbjct: 342  KFDSQHQDLEVANSSSRCLTAKLNRPLVNALDDRGVHASAFIAIQDEAISQIGRARHNFD 401

Query: 706  VAFEVLTAACAEQGNTAAIML---------SAGFNPQTEPHLRGMLTCIRAAQLWGLREK 756
                +++A     G    I+          +A  +P  E     +   + AA L  ++ K
Sbjct: 402  ETARLVSAFSFGTGCNLRILFEKVHKVGLGAASTDP--ESFFLVLAKAVTAAALGDMKRK 459

Query: 757  ARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVV 816
            ARI V AG  L+G  DE G L+ G+ F+QV     G       SR       +++ G  +
Sbjct: 460  ARIPV-AGVTLLGIADEFGYLKEGEVFVQVETVDFGQV-----SR-------RILTGRKL 506

Query: 817  IAKNPCLHPGDIRILEAVDHPELH---HLYDCLVFPQ-KGDRPHTNEASGSDLDGDLYFV 872
            I ++P + P DI +++    P  H    L + +VF      +P      G DLDGDLY +
Sbjct: 507  IGRSPTIDPSDITMVQCKKPPPGHPLLQLRNVVVFNTCTRLQPLPRRLGGGDLDGDLYTI 566

Query: 873  TWDENLIPPSKKSWPPMEYNA-AEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVH 931
              DE L PP+ +  P   ++A  EAK L+ P +  D+ +FFA  M+N+ +G + + H+  
Sbjct: 567  YEDERLFPPTPQ--PEAVFHAKVEAKELSHPCNAHDLADFFADFMLNDFVGLVSSLHLRI 624

Query: 932  ADHSEYGALDENCILLAELAATAVDFPKTGKIV---TMPAHLKPKLYPDFMG----KEAY 984
            +D SE GA D  C  LA+L + A DF KTG  V    +P   +P + PDF+     +E  
Sbjct: 625  SDASEAGAADPRCKTLAKLHSQATDFRKTGVAVKRSQLPPMHEP-IVPDFLAQSEKREGK 683

Query: 985  QSYKSNKILGRLYRQSKDAYDEDISVS-SEVDINPVDIHYDTDLEVPESVDFIADAWN 1041
              Y S + LG LYR          SVS  + D   +D + D +  +   VD   D WN
Sbjct: 684  LVYSSRRALGYLYR----------SVSWGDTDTPSLDENTDPETGLERVVD---DTWN 728


>gi|395333779|gb|EJF66156.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
          Length = 1220

 Score =  189 bits (480), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 185/636 (29%), Positives = 284/636 (44%), Gaps = 83/636 (13%)

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475
            +  TPT+     P V  SNRV+R++    D FLRV F DE       + L Y  A  V  
Sbjct: 424  VTFTPTRILLEGPYVSQSNRVIRQFAGYEDHFLRVDFRDE-------DRLQYRWAREVDG 476

Query: 476  ITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS-----EDGKT 530
             TL        + +RV   L  GF L GR F FLA+S S LR+ + WF +       G  
Sbjct: 477  TTL--------LEERVGGTLKHGFDLGGRHFEFLAYSQSALREHAVWFMNPFDHPTRGYV 528

Query: 531  SVLDIKKWMGRFTD--KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSD 588
                I+  +G F+      +K AAR+ Q F++T  +V +   + + E+ D+    Y+F+D
Sbjct: 529  DGQRIRDSLGDFSKVIDAPSKYAARLAQAFTATDPSVSISHDQCE-EMSDMGEEPYLFTD 587

Query: 589  GIGKITPDLAMEVAQKL---KLDV---NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLR 642
            G+G I+P L   + + L   K D+      P AYQIRY G KG+V     + +G++M LR
Sbjct: 588  GVGTISPKLGDMIWEALCTAKEDLRRHERKPSAYQIRYLGYKGMVGI-DERLEGVKMRLR 646

Query: 643  ESMNKFQSHH---TTLEICSWTRFQPG--FLNRQIITLLSTLNVPDEMFWSMQDS----- 692
             SMNKF +       +EI  W    PG  +LNR ++ +L    V   +F  +QD      
Sbjct: 647  PSMNKFDALDKDVAPIEIARWFD-NPGTSYLNRSLVMILEDRGVDKAVFQKLQDKAVEAV 705

Query: 693  -----------MLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGM 741
                        L K + + +   + + +        G     + +   N   +  L  +
Sbjct: 706  VTASDSIDGTVTLLKTHNIGLSLGLPYILRGLKAIGMGMKEKEVTTGTLN---DTFLYSL 762

Query: 742  LTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVL--EGGQCFIQVSEPFLGNCFSKHG 799
            +   +A  L  ++  ARI +P    L+G  DE      EG Q    + E  +  C     
Sbjct: 763  IGYAQAHILRDMKHSARIPIPDSYLLVGLADEGPAYEAEGVQNVFCLKENQIFACVQNET 822

Query: 800  SRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE------LHHLYDCLVFPQKGD 853
                   +   ++G VVI+++P +HPGD++ + A+  P         +L + +V P  G 
Sbjct: 823  D-----DEPTYLQGVVVISRSPVVHPGDVQRVYAIGKPPDDKVCFFRNLRNVVVLPSVGK 877

Query: 854  RPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL--TRPVDQRDIIEF 911
            R   +   G DLDGDLY V     L+P       P  Y     K L   R     DI +F
Sbjct: 878  RSLASMLGGGDLDGDLYSVIKYSPLLPTEHAD--PGSYEPVGTKRLPDGRQSTVDDICDF 935

Query: 912  FAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK 971
              +++ ++ LG + + H++ AD S  G  D  C+ LA+L + AVD+PK G  + +  H  
Sbjct: 936  VVEYLNSDVLGLLSDRHLIIADQSREGTNDPACLDLAQLCSQAVDYPKNG--IPVDIHDS 993

Query: 972  PKLY----PDFMGKEAYQS-----YKSNKILGRLYR 998
            P+L     PD+   E         Y S + LG L+R
Sbjct: 994  PRLLIRFKPDWKMAEDNDPRDTDYYLSPRALGELFR 1029


>gi|405952888|gb|EKC20645.1| Putative RNA-dependent RNA polymerase SHL2 [Crassostrea gigas]
          Length = 1226

 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 169/302 (55%), Gaps = 23/302 (7%)

Query: 413  VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            V R+++TPTK   LP E    NR+LR+Y    D F+RV + DE  + MN           
Sbjct: 930  VGRMILTPTKTVFLPKEPVFQNRILREYG--PDFFIRVVYRDEDFEKMNT---------- 977

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
            V+   L+       V K ++  L  GF +  R + FL  S+SQLR+ S WFF      + 
Sbjct: 978  VQSCLLDD------VLKIMKQFLKDGFRIRNRHYEFLGCSNSQLREHSFWFFHPHDDITS 1031

Query: 533  LDIKKWMGRFT-DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIG 591
              I+   G F+ D+ +A   +R G CFSST  TV+V  + +  +  D+K++ Y F+DGIG
Sbjct: 1032 ESIRNNSGEFSKDRCVASYVSRFGLCFSSTRRTVDVDESCLIYD-DDVKKDEYCFTDGIG 1090

Query: 592  KITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR-MSLRESMNKFQS 650
            +I+  LA +VA +L   ++P P A+QIR+ GCKGVVA  P  GD    + +R+SM KF+S
Sbjct: 1091 RISTKLAKKVAAELH--ISPIPSAFQIRFGGCKGVVAQDPTLGDDADVLVIRKSMIKFES 1148

Query: 651  HHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEV 710
                LEI   TR     LNRQ+ITLLS L +PDE+F  +Q+ ML  +  ML+   VA   
Sbjct: 1149 KSNNLEILGETRPGRLHLNRQVITLLSGLGIPDEVFLGLQEKMLLDIADMLLYDKVALLA 1208

Query: 711  LT 712
            L+
Sbjct: 1209 LS 1210



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 124/224 (55%), Gaps = 22/224 (9%)

Query: 413 VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
           V R+V+TPT++  LP E    NR++R+Y +  D F+RV F DE  +          I+ +
Sbjct: 371 VARMVLTPTRSLFLPKEPMFQNRIVREYGE--DFFIRVVFRDEDFEK---------ISTV 419

Query: 473 VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
             D   N       + +R+++    GF +  R + FL  S+SQLR+ S WFF      + 
Sbjct: 420 QSDAVEN-------ILERMKTFFEDGFQIQTRDYEFLGCSNSQLREHSFWFFHPRDDITS 472

Query: 533 LDIKKWMGRF-TDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIG 591
            +I+   G   T++ +A   +R G CFSST  TV+V    V     D++ + Y F+DGIG
Sbjct: 473 ENIRNSSGELSTERCVASYVSRFGLCFSSTKKTVDVDKGCVQ-YTDDVQNDEYCFTDGIG 531

Query: 592 KITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGD 635
           +I+  LA +V+ +L  +++P P A+QIR+ GCKGVVA  P  G+
Sbjct: 532 RISTKLAEKVSNEL--NISPVPSAFQIRFGGCKGVVAQDPTLGN 573


>gi|347841951|emb|CCD56523.1| hypothetical protein [Botryotinia fuckeliana]
          Length = 717

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 189/368 (51%), Gaps = 33/368 (8%)

Query: 327 GISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKR 386
            + FE+ + +   + + I+N++ + + F + L   S + + A  +++  Y    + + KR
Sbjct: 361 NLPFEVRYQLEVCISREIVNEYNIDEKFINSLAELSAQ-DPAKARNLLEYVAEHYSS-KR 418

Query: 387 LKLVQEWLLKDPELYKGPKQIDDIVEV----RRLVITPTKAYCLPPEVELSNRVLRKY-- 440
           L            L      + DI       R+  +TPT      P VE +NRVLR Y  
Sbjct: 419 LYDPSSIFTNSEAL--SFSALTDIPHYCAFSRKATVTPTSILFNSPTVETTNRVLRHYSK 476

Query: 441 KDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTR---VFKRVRSILSG 497
           ++   RFLRV F DE  +                   +NS + K R   +F RV  ++S 
Sbjct: 477 ENQEGRFLRVQFTDEKFEGR-----------------INSCADKIRNDAIFTRVFRVISN 519

Query: 498 GFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNI-AKCAARMGQ 556
           G  +  R + FLAF +SQ R+  A+FF      S  DI++WMG F+  N+ AK AAR+GQ
Sbjct: 520 GIRIGDRHYEFLAFGNSQFRENGAYFFCPSANLSCNDIRQWMGTFSHINVVAKYAARLGQ 579

Query: 557 CFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAY 616
           CFS+T A   +   ++  ++PDI R  Y F+DG+GKI+P LA  +A +LKL V+  P A+
Sbjct: 580 CFSTTRAIKGLSAPDI-VKIPDIGRGRYCFTDGVGKISPYLAQMIASELKLRVDLAPSAF 638

Query: 617 QIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLL 676
           Q R  GCKG++   P   D   + +R+S  KF + +  LEI   ++F    LNRQ IT+L
Sbjct: 639 QFRLGGCKGILVVSPDAKDN-EVHIRKSQQKFTAAYNGLEIIRCSQFSSATLNRQTITIL 697

Query: 677 STLNVPDE 684
           S L V DE
Sbjct: 698 SALGVKDE 705


>gi|409046078|gb|EKM55558.1| hypothetical protein PHACADRAFT_173705 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1167

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 181/632 (28%), Positives = 283/632 (44%), Gaps = 87/632 (13%)

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDE-GLQTMNANVLSYFIAPIVR 474
            + ITP++     P  E +NRV+RKY      FLRV F DE G Q     VL         
Sbjct: 381  VTITPSRFILSGPFPERNNRVMRKYASHTSNFLRVDFADEEGFQYRMDRVLD-------- 432

Query: 475  DITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE----DGKT 530
                     +  V +R    LS GF L  R F FL +S S L+  + WF  E        
Sbjct: 433  --------SRRFVRERFGRFLSQGFVLVDRHFDFLQWSQSGLKQHAVWFVKEFQMSHDTV 484

Query: 531  SVLDIKKWMGRFTDK----NIAKCAARMGQCFSSTYATVEVPPTEVDPEL---PDIK-RN 582
            +V  I   +G F D      +  C AR+G   +  + T +        E+   PDI+  N
Sbjct: 485  TVDSIIADLGTFHDTPYDPRLMYCPARLGARRALAFTTTDAAVEVEAEEIVVEPDIEDAN 544

Query: 583  G-YVFSDGIGKITPDLAMEVAQKLKLD------VNPPPCAYQIRYAGCKGVVACWPAKGD 635
            G   F+DG G I+ +L   V ++L+         +  P   Q R+ G KG  +    +  
Sbjct: 545  GKRSFTDGAGLISEELMTAVWEELRKKSRRYRRAHMMPDVIQHRFQGSKGT-STVSRRLP 603

Query: 636  GIRMSLRESMNKFQSHHTTL-EICS-WTRFQPGFLNRQIITLLSTLNVPD--EMFWSMQD 691
            G  + +R SM KF++  + + E+ + +TR  P  LNR +I LL  L +    E+   +QD
Sbjct: 604  GRVLVIRPSMIKFEATGSRMVEVAAAFTRAGPFRLNRPLIMLLEGLRIRGGYEILKKLQD 663

Query: 692  SMLSKLNQMLVDSDVAFEVLTAA--CAEQGNTAAIMLSAGF--------NPQTEPHLRGM 741
            +++ +        D A  + TAA      G      +S+ F        +   +P    +
Sbjct: 664  AVIQETK------DAANSLSTAARLLEPHGLGTGFKVSSVFANLARLELDSMPDPFFHRV 717

Query: 742  LTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSR 801
            L       L  L+  ARI VP G  L+G  D  G L  G+ F  V+              
Sbjct: 718  LNVAIYHILRDLKYHARIPVPGGYTLVGVADPYGYLGEGEVFACVTT------------- 764

Query: 802  FAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP------ELHHLYDCLVFPQKGDRP 855
             +   +   ++G ++I+++P +HPGD++I+ A+  P      + H + + LVF   G RP
Sbjct: 765  -STNAEPIFLEGEMMISRSPTVHPGDVQIVRAIGRPPKGSEFDKHPIMNALVFATIGKRP 823

Query: 856  HTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKH 915
              +     DLDGD+Y  T  E L+P  K++  P  Y+AA  K +     Q+D+ +F  + 
Sbjct: 824  PASCLGNGDLDGDVYVCTTKEELLP--KQTRAPASYDAAARKEVPHQSTQQDMADFVTEF 881

Query: 916  MVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT---MPAHLKP 972
            + ++N+G I +  +  AD  + G  D  C+ LA L + A D+PKTG  V    +P     
Sbjct: 882  ICSDNIGIIASRWLELAD--KRGIFDPGCLRLAYLHSLATDYPKTGLPVPLEYLPGTDMR 939

Query: 973  KLYPDFMGKEAYQS---YKSNKILGRLYRQSK 1001
            +  PD+   E   S   Y+S + LGRL+R+ +
Sbjct: 940  RGRPDWSAPETEGSRRFYQSTRYLGRLFREVR 971


>gi|151370755|gb|ABS11001.1| RNA-dependent RNA polymerase 1 [Nicotiana clevelandii]
          Length = 243

 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/233 (43%), Positives = 148/233 (63%), Gaps = 10/233 (4%)

Query: 484 KTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFT 543
           +T ++ R+ S L  GF +  ++F FLAFSSSQLRD S W F+     +  DI+KWMG F 
Sbjct: 16  RTDIYLRILSTLRNGFVIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRKWMGEFQ 75

Query: 544 D-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDI----KRNGYVFSDGIGKITPDLA 598
             +N+AK AAR+GQ F S+  T+ V   EV+  +PD+        Y+FSDGIGKI+ D A
Sbjct: 76  QIRNVAKYAARLGQSFGSSRETLSVGRHEVEV-IPDVVCSLHGTNYIFSDGIGKISADFA 134

Query: 599 MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEIC 658
             VA  +K  +   P ++QIRY G KGVVA  P     +++SLR SM K++S++  L++ 
Sbjct: 135 RRVA--IKCGLQYTPFSFQIRYGGYKGVVAVDPYSS--MKLSLRNSMLKYESNNIKLDVL 190

Query: 659 SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL 711
            W+++QP +LNRQ++TLLSTL V D++F   Q+  + +L+ +L DS  A E L
Sbjct: 191 GWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDSLKAQEAL 243


>gi|347841952|emb|CCD56524.1| hypothetical protein [Botryotinia fuckeliana]
          Length = 461

 Score =  186 bits (471), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 133/395 (33%), Positives = 200/395 (50%), Gaps = 62/395 (15%)

Query: 805  TKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSD 864
            T +  VI+G  ++ +NP LHPGD+R+++AV+ P LHHL D +VFPQ G+R   +  SG D
Sbjct: 35   TTQYNVIEGICLVGRNPSLHPGDLRVVQAVNIPALHHLRDVVVFPQSGERDVPSMCSGGD 94

Query: 865  LDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTI 924
            LDGD +FV WD++L  P++ +  PM Y A +   L RPV   D+ +FF K+M N++L +I
Sbjct: 95   LDGDDFFVIWDKDL-QPTEWNCEPMSYAALDPVALKRPVVVTDLQKFFVKYMKNDSLPSI 153

Query: 925  CNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGK--- 981
             +AH+  AD+ + G  D  C+ LAEL + AVD+ KTG+  TM  +L P  +P FM K   
Sbjct: 154  AHAHLAQADYQKQGIKDPKCLKLAELHSKAVDYVKTGQPATMQKYLAPPKWPHFMEKIHQ 213

Query: 982  EAYQSYKSNKILGRLYR---------QSKDAYDEDISVSSEVDINPVDIHYDTDLEVPES 1032
             A + Y S KILG+L+          Q ++ +D+ I  + E+D        +  L+    
Sbjct: 214  PASKQYHSQKILGQLHDKVESVDFVPQYEEPFDKRILRAYELD--------NATLKA--- 262

Query: 1033 VDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSY 1092
                  A   K  YD  +  +L Q  +  E E+ +  I S PK  S    +L+E +    
Sbjct: 263  ------ARQTKTKYDTAMRRILAQQDIKTEFEVWSTFILSKPKVGS--DYKLQEDMAVIT 314

Query: 1093 SALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLD--LQEQDS 1150
             AL+  FR V       C   +  +  ++     +A Y+VT      K+ LD  L E  +
Sbjct: 315  GALKDRFRSV-------CINTAGGKDFSILGPFVAAMYKVT------KEELDIALAECRT 361

Query: 1151 ARSV---------------VLLSFAWIANDYLARI 1170
             R+V                L+SF W+    L RI
Sbjct: 362  MRTVNGIKVPKRRMRPESMPLISFPWLFEKELGRI 396


>gi|299752904|ref|XP_001832921.2| RNA-dependent RNA polymerase [Coprinopsis cinerea okayama7#130]
 gi|298410053|gb|EAU88888.2| RNA-dependent RNA polymerase [Coprinopsis cinerea okayama7#130]
          Length = 1251

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 186/659 (28%), Positives = 289/659 (43%), Gaps = 123/659 (18%)

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYK-DLADRFLRVTFMDEG-LQTMNANVLSYFIAPIV 473
            + +TPT  +   P  E SNRV+R Y       FLRVTF DEG LQ  +++          
Sbjct: 437  VTVTPTAIFLEGPYPEQSNRVIRAYDPQHHSSFLRVTFADEGRLQYRSSD---------- 486

Query: 474  RDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS-----EDG 528
            R +   +F     V  R   IL  G  + GR+F FLA+S S L++ S WF       E+G
Sbjct: 487  RQVDHKAF-----VRARFGDILLNGLEIAGRRFEFLAYSMSALKEHSVWFVKPFDVIENG 541

Query: 529  KTSVL---DIKKWMGRFTDKNI--------AKCAARMGQCFSST-YATVEVPPTEVDPEL 576
                +    I + +G F   +         A+ AAR+ Q F++T   T+EV   E+   +
Sbjct: 542  HRVTVTADSIIQSLGTFDGLDFEPRLMHCPARYAARISQAFTATDLCTIEVQDLEIT-VI 600

Query: 577  PDIK----RNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPA 632
             DI+     + +  +DG+G ++P  +  + + L     P P A Q+R  G KG+++    
Sbjct: 601  DDIEVTSGGHKWTHTDGVGTMSPMASRAIWKALPKRKGPAPAADQVRIGGAKGMLSV-DY 659

Query: 633  KGDGIRMSLRESMNKFQS-HHTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQ 690
               G ++ LR SM KF++     +EI  ++ R  P +LNR +I +L  L VP   F   Q
Sbjct: 660  TLTGHKICLRPSMVKFEAPTRKYIEIARAFDRPTPYYLNRPLIMILEGLGVPYSTFEHFQ 719

Query: 691  DSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLR----------G 740
            D  + +  Q       A  +L +     G  ++  LS+  N      +R           
Sbjct: 720  DRAVRETRQAASSLRRAASMLDS----YGLGSSFRLSSVMNSLDRLGIRHLNPDKFYSKA 775

Query: 741  MLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGS 800
            M   I    L  L+  ARI +P    L+G  D    L+ G+ F  V              
Sbjct: 776  MEFAINHV-LRDLKNHARIPIPGAWTLVGVADVHRFLQPGEIFAYVK------------- 821

Query: 801  RFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP------ELHHLYDCLVFPQKGDR 854
                 +K   ++G ++I+++PC+HPGD+RI  A+  P      E   L + +VF      
Sbjct: 822  --PTNEKGFYLEGDILISRSPCIHPGDVRITRAIGPPPPGSPFEREPLANTVVF-----N 874

Query: 855  PHTNEASGSDLDGDLYFVTWDENLIPPSKKSW---------PPMEYNAAEAKTLTRPVDQ 905
               +   G DLDGD Y      NL+P S  +           P +Y  AE + L      
Sbjct: 875  VLASCLGGGDLDGDTY------NLLPLSDPALQGFRPTRIPEPSQYAPAEKRYLEEKSTM 928

Query: 906  RDIIEFFAKHMVNENLGTICNAHVVHADHSEY----------------GALDENCILLAE 949
            RD+ EF  ++++++ LG +     + AD S +                G  D +C+LLA+
Sbjct: 929  RDVAEFVLEYILSDVLGMVSINWRIIADQSRHAYLATYPTANGDPDSTGIFDSDCMLLAD 988

Query: 950  LAATAVDFPKTGKIVTMPA--HLKPKLYPDFMGKEAYQS-------YKSNKILGRLYRQ 999
            L + AVD+PK+G  V       LK KL PD+   E   +       Y S+  LG+L+R+
Sbjct: 989  LHSAAVDYPKSGTPVDFKKIPRLKHKLKPDWNAPETLDAQALSEKYYVSSTALGKLFRR 1047


>gi|169623159|ref|XP_001804987.1| hypothetical protein SNOG_14810 [Phaeosphaeria nodorum SN15]
 gi|160704927|gb|EAT77662.2| hypothetical protein SNOG_14810 [Phaeosphaeria nodorum SN15]
          Length = 1674

 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 163/567 (28%), Positives = 266/567 (46%), Gaps = 62/567 (10%)

Query: 421 TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
           T  Y L P    SNRV     ++ DRF+ ++F D  LQ            P+  +  L  
Sbjct: 56  TLRYVLAP----SNRV--TMDEVLDRFVLLSFPDFRLQ----------WPPVAANDALRP 99

Query: 481 FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540
            + +      +  +L  G  +    + F   S+SQL+  S + ++   K  V    + MG
Sbjct: 100 ATGREN-GDWITKMLVSGITINAISYHFFGHSNSQLKSRSCFMYAA-SKEEVARKIEGMG 157

Query: 541 RFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAM 599
             +  +++AK + R+G  FSS   +  +P +E   ++ D+    Y+F+DG G ++P  A 
Sbjct: 158 DLSKLRSVAKKSKRIGLLFSSAEVSTMLP-SERCQDIDDVTSKDYIFTDGCGLMSPQFAK 216

Query: 600 EVAQKLKL---DVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQ-SHHTTL 655
            +AQ+  +   D    P  YQIRY G KGV+   P      ++  R SM KF+ S   + 
Sbjct: 217 LLAQRRNIVFRDKRYLPSVYQIRYRGYKGVLTLDPTLSGQTQVQFRASMRKFKDSPDYSF 276

Query: 656 EICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKL-NQMLVDSDVAFEVLTA 713
            +  +++ +  G LN +I+ LL TL + ++   + Q   L  + N    D   AF+ L+ 
Sbjct: 277 AVVDYSKPYAFGSLNDEIVVLLHTLGISEKTLLAKQTQHLDFIQNVQGGDPRSAFQFLSY 336

Query: 714 ACAEQGNTAAIMLSAGFNPQT-EPHLRGMLTCIRAAQLWGLR--EKARIFVPAGRWLMGC 770
               +   A  +L  G  P++  P L  ++     A++   R  ++ RI VP  R L G 
Sbjct: 337 I--NRTELAEKLLLEG--PESVRPTLLSLVKQ-EYARMINKRDEQRCRILVPKSRLLFGV 391

Query: 771 LDEL------GVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLH 824
            D        G L+ G+CF+++++          G   A+T    +I   V++ +NPCLH
Sbjct: 392 CDPTAKDGCPGRLKEGECFVRITQ---------DGDGRAQT----IINTEVLVTRNPCLH 438

Query: 825 PGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKK 884
           PGD++  + VD PE  HL DC+VF  +G RP  +  SG DLDGD +FVTWD +L+P +  
Sbjct: 439 PGDLQKFKVVDIPEFSHLVDCIVFTTQGKRPSADLMSGGDLDGDKFFVTWDSDLVPSTVA 498

Query: 885 SWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENC 944
              P +Y   +       V      E+FA++  N +LG + N ++  A      A+   C
Sbjct: 499 E--PAQYPGGKELITFGDVTGDSRAEYFARY-TNASLGKVKNLYMKWARLG--NAMSPQC 553

Query: 945 ILLAELAATAVDFPKTGKIVTMPAHLK 971
             L  L +  VD    G  + +P +LK
Sbjct: 554 QQLNRLFSQCVD----GNHIRIPQNLK 576


>gi|336388940|gb|EGO30084.1| RNA-directed RNA polymerase [Serpula lacrymans var. lacrymans S7.9]
          Length = 1246

 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 143/475 (30%), Positives = 227/475 (47%), Gaps = 33/475 (6%)

Query: 494 ILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKW-MGRFTD-KNIAKCA 551
           ++  G +L G ++ F   S+SQLR  +  FF E      LD + + +G F    NIAK A
Sbjct: 71  LMKAGLFLNGLQYRFYHHSNSQLRSRTC-FFREANSDEELDARIYKLGDFGRIMNIAKRA 129

Query: 552 ARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL---D 608
            R+G  FS+    +++ P  V  ++ DI     VFSDG G +    A++V++   +   +
Sbjct: 130 KRIGLLFSAAEVDLQLDPKWVT-DIDDITVGDIVFSDGCGLMAKRFAVQVSKAKSIIFRN 188

Query: 609 VNPPPCAYQIRYAGCKGVVACWPAKGDGIR--MSLRESMNKFQS-HHTTLEICSWTR-FQ 664
               P  +QIRY G KGV+   P   +  +  +  R+SM KF +    +  +  +++ + 
Sbjct: 189 QRYTPTVFQIRYLGYKGVLMLDPKLDEEKKFLVKFRKSMKKFSTTEDKSFSVVGYSQPYS 248

Query: 665 PGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI 724
            G LN  I+ LLS+L + DE F + Q +    +     D+  A + L++   +      +
Sbjct: 249 FGRLNNDIVVLLSSLGISDEKFQAKQRAYFEWIEGASHDAVKAIDFLSS-LGKYSLAERL 307

Query: 725 MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI 784
           +L    +P     +R +     A  L   R + R+ +   R L G  D  GVL+ GQ  I
Sbjct: 308 LLDGMDSPAVSKEIRALQNAEVAQFLKNNRPRTRMIIHKSRLLYGVCDPYGVLKEGQVQI 367

Query: 785 QVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD 844
           +++            SR   T     I G +++ +NPCLHPGD   L AVDHP L HL D
Sbjct: 368 RIT-----------SSRGGATTP---INGDILVVRNPCLHPGDCLKLRAVDHPSLSHLLD 413

Query: 845 CLVFP---QKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR 901
           C+VF    + G +P    +SG DLDGD +FV WD +L+P       P +Y   + + + +
Sbjct: 414 CIVFATVGRPGHQPAPAMSSGGDLDGDKFFVCWDPDLVPSLVHE--PYDYPPNKER-VGK 470

Query: 902 PVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVD 956
            V + D+  +FA +  N +L  +   H      S  GAL   C  L  L + +VD
Sbjct: 471 DVTRMDLATYFASYN-NMSLAKVSALHQKWVRSSPDGALCVQCQELNALHSQSVD 524


>gi|452978294|gb|EME78058.1| hypothetical protein MYCFIDRAFT_145022 [Pseudocercospora fijiensis
           CIRAD86]
          Length = 1703

 Score =  182 bits (463), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 154/505 (30%), Positives = 240/505 (47%), Gaps = 43/505 (8%)

Query: 491 VRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAK 549
           V  +L  G  L G  + F   S+SQL+  S + F+   K  + +  + +  F++ +++ K
Sbjct: 109 VARLLKTGVVLNGLAYHFFGHSNSQLKSRSCFLFAA-SKEVIKEKVEALADFSNMQSVGK 167

Query: 550 CAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL-- 607
            A R+G  FSS    +E+ P E   ++ D+K   YVF+DG G I   LA +VAQ+ ++  
Sbjct: 168 KAKRLGLLFSSAEHALELQP-ERCTDIDDVKLGDYVFTDGCGLIAVRLAKQVAQRKRIVY 226

Query: 608 -DVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQS-HHTTLEICSWTR-FQ 664
            +    P   QIRY G KGV+   P      ++  R+SM K +     +  +   ++ + 
Sbjct: 227 RNKRYLPSVLQIRYRGYKGVLMIDPTLTGQTQVLFRKSMKKLKDVKDLSFSVVEHSKPYT 286

Query: 665 PGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLV-DSDVAFEVLTAACAEQGNTAA 723
            GFLN +I+ LL+ L V  +   S Q   L  L++    +   AF  L+     + + A 
Sbjct: 287 FGFLNDEIVVLLNALGVSTDTILSKQTEYLQFLDEAYNGEPRAAFRFLSYQ--NELDLAE 344

Query: 724 IMLSAGFNPQTEPHLRGMLTCIRAAQLWGLRE-KARIFVPAGRWLMGCLDELGVLEG--- 779
            +L  G +      LR ++    +  L    E + RI +   R L G  D  G   G   
Sbjct: 345 KLLIEGVH-SVRKSLRSLVKTEYSRMLNKYEEQRCRIMLTQSRLLFGVCDPTGRDGGMSR 403

Query: 780 ---GQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDH 836
              G CF++++    G           E + L  I   V++ +NPCLHPGD++   AVD 
Sbjct: 404 LPPGTCFVRITLDGDG-----------EPRTL--INTEVLVTRNPCLHPGDLQKFRAVDV 450

Query: 837 PELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEA 896
           PE  HL DC+VFP +G RP  +  SG DLDGD +FVTWD ++IP  KK      Y   + 
Sbjct: 451 PEFSHLVDCIVFPIRGSRPSADLMSGGDLDGDKFFVTWDPDIIP--KKIAEAAMYPGVKE 508

Query: 897 KTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVD 956
           +     +   D  E+FA++  + +LG I N ++  A     GA+   C  L  L +  VD
Sbjct: 509 RHHFGEITGDDRAEYFARYR-STSLGKIKNLYLKWARLK--GAMSPECQQLNRLFSQCVD 565

Query: 957 FPKTGKIVTMPAHLK--PKLYPDFM 979
               G  V +PA  +  P+  PD +
Sbjct: 566 ----GNHVKVPAAFEDPPETPPDAL 586


>gi|336364173|gb|EGN92535.1| hypothetical protein SERLA73DRAFT_99065 [Serpula lacrymans var.
           lacrymans S7.3]
          Length = 1660

 Score =  182 bits (463), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 143/475 (30%), Positives = 227/475 (47%), Gaps = 33/475 (6%)

Query: 494 ILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKW-MGRFTD-KNIAKCA 551
           ++  G +L G ++ F   S+SQLR  +  FF E      LD + + +G F    NIAK A
Sbjct: 96  LMKAGLFLNGLQYRFYHHSNSQLRSRTC-FFREANSDEELDARIYKLGDFGRIMNIAKRA 154

Query: 552 ARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL---D 608
            R+G  FS+    +++ P  V  ++ DI     VFSDG G +    A++V++   +   +
Sbjct: 155 KRIGLLFSAAEVDLQLDPKWVT-DIDDITVGDIVFSDGCGLMAKRFAVQVSKAKSIIFRN 213

Query: 609 VNPPPCAYQIRYAGCKGVVACWPAKGDGIR--MSLRESMNKFQS-HHTTLEICSWTR-FQ 664
               P  +QIRY G KGV+   P   +  +  +  R+SM KF +    +  +  +++ + 
Sbjct: 214 QRYTPTVFQIRYLGYKGVLMLDPKLDEEKKFLVKFRKSMKKFSTTEDKSFSVVGYSQPYS 273

Query: 665 PGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI 724
            G LN  I+ LLS+L + DE F + Q +    +     D+  A + L++   +      +
Sbjct: 274 FGRLNNDIVVLLSSLGISDEKFQAKQRAYFEWIEGASHDAVKAIDFLSS-LGKYSLAERL 332

Query: 725 MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI 784
           +L    +P     +R +     A  L   R + R+ +   R L G  D  GVL+ GQ  I
Sbjct: 333 LLDGMDSPAVSKEIRALQNAEVAQFLKNNRPRTRMIIHKSRLLYGVCDPYGVLKEGQVQI 392

Query: 785 QVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD 844
           +++            SR   T     I G +++ +NPCLHPGD   L AVDHP L HL D
Sbjct: 393 RIT-----------SSRGGATTP---INGDILVVRNPCLHPGDCLKLRAVDHPSLSHLLD 438

Query: 845 CLVFP---QKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR 901
           C+VF    + G +P    +SG DLDGD +FV WD +L+P       P +Y   + + + +
Sbjct: 439 CIVFATVGRPGHQPAPAMSSGGDLDGDKFFVCWDPDLVPSLVHE--PYDYPPNKER-VGK 495

Query: 902 PVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVD 956
            V + D+  +FA +  N +L  +   H      S  GAL   C  L  L + +VD
Sbjct: 496 DVTRMDLATYFASYN-NMSLAKVSALHQKWVRSSPDGALCVQCQELNALHSQSVD 549


>gi|119370386|gb|ABL68090.1| putative RNA-directed RNA polymerase 3 [Nicotiana attenuata]
          Length = 110

 Score =  182 bits (462), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 83/110 (75%), Positives = 97/110 (88%)

Query: 668 LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLS 727
           LNRQI+TLLS+L+V D +FW MQ  M+S L++MLVDSDVAF+V+TA+CAE GNTAAIMLS
Sbjct: 1   LNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAAIMLS 60

Query: 728 AGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVL 777
           AGF PQ+EPHLRGML+ IRA+QL  LR KARIFVP+GRWLMGCLDELG L
Sbjct: 61  AGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGEL 110


>gi|403417878|emb|CCM04578.1| predicted protein [Fibroporia radiculosa]
          Length = 1258

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 204/757 (26%), Positives = 331/757 (43%), Gaps = 129/757 (17%)

Query: 334  FLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEW 393
            F + A+++ G +N  +LS    D+ +    + ++AA         PV    + +   + +
Sbjct: 363  FQLTALLYNGSLNTEELSALRPDIEKLHREQASIAASVLQDFKGAPVSPNIRTIVDHRRY 422

Query: 394  LLK---DPELYKGPKQID-DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLR 449
            L +   +  +  G ++ D +I     +  TPT+     P    SN V+R+Y +  DRF+R
Sbjct: 423  LARIIGERTMSLGQQRSDKNIFTCHHVTFTPTRMILEGPSRLQSNSVVREYWENRDRFIR 482

Query: 450  VTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFL 509
            V F+DE       +          +++   SF Q      RV +IL GGF +  R F  L
Sbjct: 483  VDFVDENRSHFRLD----------QEVDGASFLQD-----RVGTILKGGFQIASRVFELL 527

Query: 510  AFSSSQLRDCSAWFFSEDGKTS-------------VLDIKKWMGRFTDKNI-AKCAARMG 555
             +S+S L D   WF +   + S               +I++ +G  ++  + AK AAR+G
Sbjct: 528  GYSNSSLGDHVFWFVNPFERVSRNANGQEVREFITAEEIRRRLGDLSEIALPAKYAARIG 587

Query: 556  QCFSSTYATVEV--PPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKL------KL 607
            Q F+STY +V+V     E   E+ + + N     DG+G+I+ DLA  + + +      + 
Sbjct: 588  QAFTSTYFSVQVVEDEWEEIEEILEDRDNPKSHVDGLGRISQDLANAIWEGMCEEEPERR 647

Query: 608  DVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHH--------------- 652
                 P A+QIR+ G KGVVA    +  G ++ LR  M KF+ H                
Sbjct: 648  AYGVKPSAFQIRFIGYKGVVAV-DRQLKGRKLCLRPEMRKFKPHRCDGCRAKLFCAHLNN 706

Query: 653  --TTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSML----------SKLNQ 699
               +L I  ++   +  +L R  +T+L    V DE+F ++QD              K  +
Sbjct: 707  PIQSLHIAEAFHGPRRAYLTRDPVTILEDREVRDEVFENLQDEAKRTTYMARDSSEKYLE 766

Query: 700  MLVDSDVAFE----VLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLRE 755
            +L    + F+     L     + G      + A  N   +P   G+        L  L+ 
Sbjct: 767  LLQSHHLGFQYRLPFLLQRLLDIGLDCGSQILAE-NVLNDPFFLGLREYGIQHVLRDLKT 825

Query: 756  KARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV----- 810
            +ARI VP    L+G  DE                  G  ++K G    + K  Q+     
Sbjct: 826  RARIPVPNSYLLVGVADE------------------GPAYTKQGHSVYQLKNGQIFACVQ 867

Query: 811  ---------IKGFVVIAKNPCLHPGDIRILEAVDHPEL--------HHLYDCLVFPQKGD 853
                     +KG   I ++P +HPGD++ + A+  P++         H+ + +V P  G 
Sbjct: 868  ESPDAKPIWLKGLCFITRSPTVHPGDVQRVTAIGKPDVPDGQICLFEHMKNVVVLPTVGC 927

Query: 854  RPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFA 913
            R   +   G DLDGDLY+V     L+P      PP  Y   + K   R     D+ +F  
Sbjct: 928  RSLASCLGGGDLDGDLYYVFHYSQLLP--VLHVPPAAY--PDEKPPPRQFTFDDVCDFIV 983

Query: 914  KHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIV---TMPAHL 970
            ++M ++ LG +    +V AD S+ G+LD+ CI LA L + AVD+PKTG+ V   T P  L
Sbjct: 984  EYMHSDVLGLLSVRRLVIADQSQEGSLDKRCIELARLCSDAVDYPKTGRAVNSRTAPKKL 1043

Query: 971  KPKLYPDFMGKEAYQS------YKSNKILGRLYRQSK 1001
             P   PD+   E   S      Y+S++ LG+LYR+ K
Sbjct: 1044 LP-YSPDWHADEDNISDPLADCYQSDRALGKLYRRIK 1079


>gi|400596582|gb|EJP64353.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
          Length = 590

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/299 (37%), Positives = 154/299 (51%), Gaps = 23/299 (7%)

Query: 418 ITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDIT 477
           ITPT      P VE SNRV+RKY +L DRFLRV F+ E                I +D  
Sbjct: 305 ITPTSLKLNLPNVESSNRVMRKYNNLHDRFLRVQFLSETESNR-----------IAKDRY 353

Query: 478 LNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKK 537
            N       V+KR+   L  G  +  R + FLAF +SQLR+ S  FF      S  DI+K
Sbjct: 354 NND-----DVWKRLLRALHKGIRIGERTYEFLAFGNSQLREGSVTFFCPTAHVSCDDIRK 408

Query: 538 WMGRFTD-KNIAKCAARMGQCFSSTYAT--VEVPPTEVDPELPDIKRNGYVFSDGIGKIT 594
           W+G F   +N+AK  AR+GQCFS+T     V VP       + DI+  G  F+DG+G I+
Sbjct: 409 WLGNFDHIRNVAKFGARIGQCFSTTREVRGVRVPTIR---HIDDIEAKGECFTDGVGIIS 465

Query: 595 PDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAK-GDGIRMSLRESMNKFQSHHT 653
             LA  V  +L+LD+   P A+Q R  G KGV+A WP +    + + LR+S  KF +   
Sbjct: 466 ALLAQLVVDELELDIVGNPSAFQFRMGGAKGVLAVWPREYAKHMEVCLRKSQIKFSTEAN 525

Query: 654 TLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT 712
           TLEI    +     LNRQIIT+L  L VP   F ++ +  +    + +     A ++LT
Sbjct: 526 TLEIIKCAKTSTATLNRQIITILEHLGVPLGAFMALLNKQIQHYEEAMTSRVAAIDLLT 584


>gi|389748392|gb|EIM89569.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
          Length = 1274

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 188/673 (27%), Positives = 285/673 (42%), Gaps = 123/673 (18%)

Query: 416  LVITPTKAYCLPPEVELSNRVLRKYKD----LADRFLRVTFMDEGLQTMNANVLSYFIAP 471
            + ITPT+     P    +NRV+R Y++    L   F+RV F DE       +   Y    
Sbjct: 428  ITITPTRMLLEGPYPTQNNRVIRGYQEYDSTLVGNFVRVDFRDE-------DRFQYRFNR 480

Query: 472  IVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSED---- 527
             V    L        + KRV   L  GF L GR F F A+SSS LRD  A +        
Sbjct: 481  AVDGGYL--------LEKRVLDFLKPGFSLGGRHFDFFAYSSSSLRDSHALWAIHPFDVP 532

Query: 528  ---------GKTSVLDIKKWMGRFTD--KNIAKCAARMGQCFSSTYATVEVPPTEVDPEL 576
                     G  +   I+  +G F+      +K AAR+GQ  S+T  +V +   + D ++
Sbjct: 533  VGASPTILCGHITADMIRHSLGNFSTVINQPSKLAARVGQTCSATTPSVRLKREQWDDDM 592

Query: 577  PDIKRNGYVFSDGIGKITPDLAMEVAQKL------KLDVNPPPCAYQIRYAGCKGVVA-- 628
             D+  + Y  +DG+G I+ DL  E+   L      K      P A+QIR+ G KGVV   
Sbjct: 593  VDLGESPYEHTDGVGTISSDLRDEIWATLCSKGWDKDKDRAKPDAFQIRFLGFKGVVVVD 652

Query: 629  -CWPAKGDGIRMSLRESMNKF-----QSHHTTLEIC-SWTRFQPGFLNRQIITLLSTLNV 681
             C      GIRM LR SM KF     + ++ + EI  ++ R     LNR  I +L    V
Sbjct: 653  YCLT----GIRMRLRPSMKKFDVDEEEKNNASFEIVRAFDRPNRYSLNRSTIMVLEDRGV 708

Query: 682  PDEMFWSMQ-----------DSMLS-----KLNQMLVDSDVAFEVLTAACAEQGNTAAIM 725
            P + F  +Q           DS+ S     ++N++ +  D+   +   A  +  +   ++
Sbjct: 709  PIDTFMKLQEKAKETIFTAGDSIASFVAFLRINRLGIGFDLPLILERLAVLKDSSHKNVV 768

Query: 726  LSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQ 785
             S        P L  +L     ++L  L+ KA+I VP G  L+G  DE      GQ +IQ
Sbjct: 769  RSF-----ENPFLERVLRFAMNSRLRDLKHKAQIPVPGGFKLVGVADE------GQAYIQ 817

Query: 786  VSEPFLGNCFSKHGSRFA-----ETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE-- 838
                       K G  +A        + + +KG   I ++P   PGDI+ + A+  P   
Sbjct: 818  EGLDPSSVATLKEGEIYACVRDGHKAEPKFLKGDCFITRSPVNDPGDIQRVRAIGKPPED 877

Query: 839  ----LHHLYDCLVFPQ-KGDRPHTNEASGSDLDGDLYFVTW---DENLIPPSKKSWPPME 890
                   L + +V P   G R   +   G D+DGD++ +     D NL+P   K  PP E
Sbjct: 878  KVCFFRGLQNVVVLPAVPGTRSLASCLGGGDVDGDMFDIVGFDCDSNLLPTLHK--PPAE 935

Query: 891  YNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTI-------------------CNAHVVH 931
            Y +    TL  P  + D+  F  +++ ++ LG +                    N   V 
Sbjct: 936  YKSVGTYTLDHPATEDDVWSFVVEYIQSDVLGLLSERLLTIAGETLSSSVHRPTNGTDVS 995

Query: 932  ADHSEYGALDENCILLAELAATAVDFPKTG------KIVTMPAHLKPKLYPDFMGKEAYQ 985
             D SE G  +  C+ LA+L + AVD+PK G      +I   P   +P      +  E   
Sbjct: 996  PDQSEDGMSNPLCLELAKLCSQAVDYPKNGIAVETDRIPYPPTRFRPNWARAEVSDEREG 1055

Query: 986  S-YKSNKILGRLY 997
              Y+S++ LGRL+
Sbjct: 1056 DFYQSDRALGRLF 1068


>gi|4768840|gb|AAD29638.1|AF117611_1 DosA protein [Dictyostelium discoideum]
          Length = 1069

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 162/584 (27%), Positives = 260/584 (44%), Gaps = 93/584 (15%)

Query: 576  LPDI-KRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKG 634
            +PDI  + G+ F++G G I   L   + Q+   + N   CAYQIR  G KGV+       
Sbjct: 2    IPDIISKGGHNFTEGCGFIGFKLVELINQQN--NYNSSTCAYQIRLGGSKGVLVL-NENI 58

Query: 635  DGIRMSLRESMNKFQ---------SHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEM 685
            D + + +R SM+KF+           H TLEI S +      LNRQ ITLLS   V D  
Sbjct: 59   DEMSLQIRPSMSKFELDYKSGQLDGGHKTLEIVSASTTSRCKLNRQAITLLSNAGVEDST 118

Query: 686  FWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCI 745
            F  M +  L++  Q LVD +++ E+L            I     FN   + ++R +L  +
Sbjct: 119  FLQMLEVELNQNAQTLVDVNLSKELLGDFFQH------ITEYELFN---DYYIRSILLKL 169

Query: 746  RAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET 805
              ++L  +++K  I V   R L+G  D  G L     +I+V E                 
Sbjct: 170  YKSKLIKIQDKCWIEVKESRNLLGVCDTSGTLPEDTVYIEVEEL----------DPIDNL 219

Query: 806  KKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDL 865
             K +VI G V + KNPC HPGD+R L+A+DHP L+   + L F   G  P+  + SGSDL
Sbjct: 220  MKPKVIIGRVAVLKNPCHHPGDVRFLKAIDHPPLNGKRNVLFFSTNGMVPNFKQCSGSDL 279

Query: 866  DGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRD------------------ 907
            DGD YFV +D+ LI     +  P      E +T+   + + D                  
Sbjct: 280  DGDRYFVIYDQTLIREDLITHEPY---LGEEQTVNPLIGEEDSDDDQYENDDNDITIPTS 336

Query: 908  ------------IIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAV 955
                        + + + K++    LGTI N H+  +D  +  ++  N I +A   A  V
Sbjct: 337  TTTKSTNNTPTKLSDIYLKNVDKSKLGTISNTHLAISDIEKVSSI--NSIKVAIQCAIEV 394

Query: 956  DFPKTGKIVTMP----AHLKPKLYPDFM-----------GKEAYQSYKSNKILGRLYRQS 1000
            D  KT     +P    + LK K YP FM           G    + Y S++++G++Y  +
Sbjct: 395  DSVKTSVHGIIPRDVKSILKEKGYPHFMKIKNGSTFEYKGGNQRKYYISDRVIGKIYDSA 454

Query: 1001 KD-AYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKV 1059
            ++  +  D    ++VD + +   Y   L          + +     Y  ++N +L ++  
Sbjct: 455  ENLLWFGDFLPEAKVDESLLVQGYKEYLN--------HENFTTYMDYKSKINSILRRFGA 506

Query: 1060 NREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVF 1103
              EE+L+ G  +  P+++ +   E K   K +Y++++K F   F
Sbjct: 507  QSEEDLLIG--FMDPQFSEKLSIEAKAHFKSNYNSIQKLFYHNF 548


>gi|170117206|ref|XP_001889791.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
 gi|164635257|gb|EDQ99567.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
          Length = 1690

 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 153/496 (30%), Positives = 230/496 (46%), Gaps = 44/496 (8%)

Query: 491 VRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAK 549
           +  +L  GF+L   ++ F   S+SQLR  S +    +    + D    +G F    NIAK
Sbjct: 93  IARLLKAGFFLNDIQYRFYHHSNSQLRGRSCFLRQANNDKELDDRIYQLGDFGRIMNIAK 152

Query: 550 CAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL-- 607
            A R+G  FSS      + P  +  ++PDI+    +FSDG G I+  L++ +++  ++  
Sbjct: 153 RAKRIGLLFSSAQIDYRLDPKYI-ADIPDIQDGDELFSDGCGLISKRLSIALSKAKRITF 211

Query: 608 -DVNPPPCAYQIRYAGCKGVVACWP---AKGDGIRMSLRESMNKFQS--HHTTLEICSWT 661
            +V   P  +QIRY G KGV+   P   A+G  +    R+SM KF +   HT   +    
Sbjct: 212 RNVRYTPTVFQIRYLGYKGVLMLHPQLDAEGKHL-AQFRKSMKKFTTTTDHTFSVVGHSR 270

Query: 662 RFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNT 721
            +  G LN  II LLS L V +E   + QD     L     D   A + L+  C +Q   
Sbjct: 271 PYTFGRLNNDIIVLLSCLGVTNEKLLNKQDEYFQWLRNATEDPTAAVDFLS--CIDQYPL 328

Query: 722 AAIMLSAGFN-PQTEPHLRGMLTCIRAAQLWGLREK--ARIFVPAGRWLMGCLDELGVLE 778
           A  +L  G N P     +R  L     A+    REK  +R+ +   R L G  D   VL+
Sbjct: 329 AGKVLLNGINDPDVAKEIR-RLQLGEIARYTDEREKFKSRMIIRESRRLFGVCDPFQVLK 387

Query: 779 GGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE 838
            G+  I++     G     HG               V+I +NPCLHPGD   L AV + +
Sbjct: 388 EGEVHIRIMASRKGPSTPIHGD--------------VLIVRNPCLHPGDCLKLRAVHNDK 433

Query: 839 LHHLYDCLVF---PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPS-KKSWPPMEYNAA 894
           L HL DCLVF    + G     + +SG DLDGD + V WD++L+PP   +S+   +Y   
Sbjct: 434 LSHLVDCLVFASVARPGHHAAPSMSSGGDLDGDEFLVCWDKDLVPPRISESY---DYPGN 490

Query: 895 EAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATA 954
           + + +++ V + D+   FA +     L  +   H   A +S  GAL   C  L  L + +
Sbjct: 491 KER-ISKKVTREDLAVHFASYNA-AGLARVSALHNKWARYSPQGALSVQCQELNALHSQS 548

Query: 955 VDFPKTGKIVTMPAHL 970
           VD    G  + +P  L
Sbjct: 549 VD----GAGIKIPDRL 560


>gi|116195262|ref|XP_001223443.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51]
 gi|88180142|gb|EAQ87610.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51]
          Length = 1676

 Score =  177 bits (448), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 125/405 (30%), Positives = 192/405 (47%), Gaps = 33/405 (8%)

Query: 575 ELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL---DVNPPPCAYQIRYAGCKGVVACWP 631
           ++PDI+   Y+F+DG G + P LA E+A+++ +   D    P   QIRY G KGVV   P
Sbjct: 164 DIPDIETADYIFTDGCGLVAPKLAQELARRVGIVFRDRRYTPSVLQIRYRGYKGVVTVDP 223

Query: 632 --AKGDGIRMSLRESMNKFQS--HHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFW 687
             A      + +R+SM KF     H+   +     +  G+LN ++I LL  L V   +  
Sbjct: 224 TMAADKKYLLRMRKSMKKFSGGDDHSFSVVEHSKPYTYGYLNDEVIILLDALGVDRAVIK 283

Query: 688 SMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRA 747
             Q+     L     D   AF  L      Q     +M S        P ++ ++    A
Sbjct: 284 RKQEEHFRFLADATQDPRSAFRFLCYVNMPQLAERVLMDSLE---SVRPRIQALVKNEYA 340

Query: 748 AQLWGLRE-KARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETK 806
             L    E K RI +P  R L G  D  GVL+ G+C ++++    G   +  G       
Sbjct: 341 KMLNKRDEQKCRILLPKSRLLFGVCDAWGVLKEGECAVKITMDGDGQPAALKGCD----- 395

Query: 807 KLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLD 866
                   V++ +NPCLHPGD++  + V+  EL HL DC+VF  +G RP  +  SG DLD
Sbjct: 396 --------VLVTRNPCLHPGDMQKFKVVEKRELAHLVDCIVFSSQGRRPAADLMSGGDLD 447

Query: 867 GDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICN 926
           GD +FV WD +++P +     P +Y  A+ +    P+   D +E+FA++  N +LG + N
Sbjct: 448 GDTFFVCWDSDIVPATLSQ--PAQYPGAKERLRFEPITDDDRLEYFARYN-NASLGRVKN 504

Query: 927 AHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK 971
            ++  A     GA+ E C  L  L +  VD    G  + +P  L+
Sbjct: 505 LYLDWA--RARGAMAEQCQELNRLFSQCVD----GNFIRIPQKLE 543


>gi|241633128|ref|XP_002410399.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
 gi|215503416|gb|EEC12910.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
          Length = 756

 Score =  176 bits (445), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 155/520 (29%), Positives = 246/520 (47%), Gaps = 55/520 (10%)

Query: 272 ISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFCIHYEEGISFE 331
           + +S RH     KV+  L  R  +  + +       E   ++  +  +F +     +SF 
Sbjct: 264 MKLSFRHGQVERKVVDRLSRRCKRGTTFAYAPMQTREVGSQLKQARHWFNVTLMPHLSFS 323

Query: 332 IMFLVNAVMHKG-------IINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDAC 384
             + +NAV+ +G       ++ Q Q   +F + L   +R  N  AL+          +A 
Sbjct: 324 CCYALNAVLQQGNDAVAQMVLLQQQAFHNFVNNLVDFAR-ANEGALEQALFCIRSAIEA- 381

Query: 385 KRLKLVQEWLLKDPELYKG-------PKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVL 437
              + +    +  PEL++        PK       VRR+ +TP+  + LPP V   NRVL
Sbjct: 382 ---RSIVNVHVTLPELFRKFCLAYVPPKVPRGSCLVRRVFVTPSCVFFLPPNVHSENRVL 438

Query: 438 RKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSG 497
           R +   A+  LRV+F D+ LQ ++ +++ +     + D  +  F             L  
Sbjct: 439 RCFD--AEYALRVSFRDDNLQHLSHSLMFHRQKEEMVDTIVAKF-------------LRT 483

Query: 498 GFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKT-SVLDIKKWMGRFTD-KNIAKCAARMG 555
           G  + GR+F FLA S SQLRD   W ++ D +  +   I++WMG F+   N+AK  ARMG
Sbjct: 484 GIEVGGRQFKFLASSCSQLRDHGVWLYAMDRQGFTAESIRRWMGDFSAIPNVAKKMARMG 543

Query: 556 QCFSSTYATVEVPPTEVD-PELPD-------IKRNGYVFSDGIGKITPDLAMEVAQKLKL 607
           QCFSST  +V+VP    +  E+PD       +    + FSDGIG I+  L  +V +  KL
Sbjct: 544 QCFSSTEESVKVPLHGGNMEEVPDVVGGVHPVSGKEFTFSDGIGMISTSLMQKVCK--KL 601

Query: 608 DVNPPPCAYQIRYAGCKGVVACWPA-KGDGIRMSLRESMNKFQ-SHHTTLEICSWTRFQP 665
           D+   P A QIRYAG KG++   P  +GD  ++ LR+SM KF  S+  +LE+   +  + 
Sbjct: 602 DLAEVPSAIQIRYAGYKGMLCVNPELRGD--KLVLRDSMRKFSCSNSDSLEVIKVSAPRT 659

Query: 666 GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI- 724
            +LNR +IT+L  L VP  +F  +Q  M+      LV    A  VL   C   G T    
Sbjct: 660 VYLNRFLITILEQLGVPSRVFLCLQQKMMLTFADALVCESTALRVL---CTYVGGTLPFL 716

Query: 725 -MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA 763
            +   GF    +P +R +L  +  + +   R + ++F P 
Sbjct: 717 RLQQNGFCLARDPFVRLLLYTVYRSTMGKRRCRPQLFWPG 756


>gi|392569009|gb|EIW62183.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
          Length = 793

 Score =  174 bits (440), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 140/493 (28%), Positives = 220/493 (44%), Gaps = 53/493 (10%)

Query: 498 GFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-------KNIAKC 550
           G  + G ++ FL F+ SQ++     FF E    +V   ++ +  F D           K 
Sbjct: 68  GVEINGVRYRFLGFTESQVKAGKLMFFREGHGWTV---ERLLASFGDLSAVYLKSGYGKY 124

Query: 551 AARMGQCFSSTYATVEVPPTEVDPELPDIKR-NGYVFSDGIGKITPDLAMEVAQKLKLDV 609
           +AR+G  FSST  +++VP  E   E+PD+K  +G +++DG G I    A ++  K     
Sbjct: 125 SARLGLSFSSTVESLDVP-REAAHEMPDLKAPDGSLYTDGCGMIRDSFAKKLCTKHNFP- 182

Query: 610 NPPPCAYQIRYAGCKGVVACWP---------AKGDGIRMSLRESMNKFQSHHTTLEICSW 660
            P    +Q+R  G KG++  +P                ++ R SM K++   T LEI + 
Sbjct: 183 -PDTSVFQVRRGGIKGLLVRYPDEKFERLGGTSSSSHLIAYRPSMYKYEDGPTMLEINNH 241

Query: 661 TRF-QPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTA---ACA 716
                P  LN Q   LL +L VP ++F  +    +  +  ++ D + A   +     A  
Sbjct: 242 NLPPAPAHLNVQFTVLLLSLGVPVDVFKRLLQDQVDIIGSIVTDREKALHYIKGELDAGV 301

Query: 717 EQG-NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELG 775
           E G N +   +    +  +EP++R  L   +  Q   LR K  + +    ++ G +DE  
Sbjct: 302 EDGLNQSLYAMLLAQHDLSEPYVRQRLLKYQEVQYESLRRKMNLRIMDSCYVFGVVDEDS 361

Query: 776 VLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVD 835
           VL  G+ ++        N  ++ G          ++   VV+A+NP  HPGDIR L AVD
Sbjct: 362 VLAPGEVYV--------NLPARSG----------ILVRDVVVARNPSYHPGDIRKLRAVD 403

Query: 836 HPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKK-------SWPP 888
            P+L H  +C+VFP+KG R   +  S  DLDGD+YFV W+  LIP ++        S   
Sbjct: 404 RPQLRHHRNCIVFPRKGPRSVPDTISSGDLDGDMYFVAWEPTLIPSTEMKPVNRALSMSA 463

Query: 889 MEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLA 948
             + A  A     P   R  +E F +   +  LG + N      D +   A  E    L 
Sbjct: 464 AGHTATSASGRQLPDMPRAAVETFLQLRYSRLLGRMANEWTKAVDKTVDLANAEFPRRLV 523

Query: 949 ELAATAVDFPKTG 961
            L   A+D  KTG
Sbjct: 524 PLIEAALDIMKTG 536


>gi|402468934|gb|EJW04010.1| hypothetical protein EDEG_01704 [Edhazardia aedis USNM 41457]
          Length = 2457

 Score =  172 bits (436), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 117/193 (60%), Gaps = 7/193 (3%)

Query: 809  QVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGD 868
             ++ G +V+AKNPCLHPGD+RI EAV   EL HL D +VF  KG RP  N  SGSDLDGD
Sbjct: 35   NILFGSIVVAKNPCLHPGDVRIAEAVYKKELEHLQDVIVFSGKGSRPLFNMCSGSDLDGD 94

Query: 869  LYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAH 928
             Y V WD+ LIP   K+  P  Y+      +   V   D+I F+ ++M  + LG I  AH
Sbjct: 95   QYAVIWDKRLIPT--KTVDPDTYDNTTI-LMKEMVTLNDVINFYVRYMKEDELGLIATAH 151

Query: 929  VVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYK 988
            +  +D      +D+ CI LA+L    VDFPKTG +  +P  L P  YPDFM + +   YK
Sbjct: 152  LATSDR--LSIMDKECITLAKLFNKGVDFPKTGYVARLPDDLLPSSYPDFMQQNS--QYK 207

Query: 989  SNKILGRLYRQSK 1001
            S+KILG++YR+ K
Sbjct: 208  SDKILGKMYRRCK 220


>gi|393244916|gb|EJD52427.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
          Length = 813

 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 207/809 (25%), Positives = 318/809 (39%), Gaps = 149/809 (18%)

Query: 415  RLVITPTKAYCLPPEVELSN--RVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
            RL +TP +   L   +   +  R  R   D A RF+ VTF        ++   SY++ P 
Sbjct: 18   RLSVTPNEDIVLSATMRKDDESRATRWVDDPA-RFMVVTF--------DSKAESYYLGP- 67

Query: 473  VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
                             R+  ++  G    G +FSFL F+ SQL   +  FF E    ++
Sbjct: 68   -------------EGLPRLLELMRHGLETGGSRFSFLGFTESQLGAGALLFFEEGDGYTI 114

Query: 533  LDIKKWMGR----FTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSD 588
              + ++ G     F      K AAR+G  FSST    E+ P+++         +G V +D
Sbjct: 115  DSMLEYFGELEPVFVKSGYGKYAARLGLSFSSTKPVYELSPSDLISIDDRFALDGTVTTD 174

Query: 589  GIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP-------AKGDGIRMSL 641
            G G I   LA ++   + L +      +Q+R  G KGV+A +P       A+     ++ 
Sbjct: 175  GCGLIKDSLARQLC--ILLGIANTTAIFQVRIGGIKGVLARYPDDVFERLAQNSVAVIAY 232

Query: 642  RESMNKFQSHHTTLEI--CSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQ 699
            R SM K++     +E+   S TR     LN Q I LL TL V  E+F  +    L +++ 
Sbjct: 233  RPSMFKYRGGPQIVELNKISKTRPDSARLNIQFILLLLTLGVGVEVFQQLLSIQLERIDN 292

Query: 700  MLVDSDVAFEVL---------TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQL 750
            +  D   A   L         + A       A +ML AGF+  +EP L+  L  +R   L
Sbjct: 293  IFSDRKSAIAFLENAYDVTLDSNATRSLYQDAFLMLHAGFD-LSEPQLQWSLNTLRTQML 351

Query: 751  WGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
              L++K +I V     L G  DE   LE  + ++ +  P  G  F   G R         
Sbjct: 352  KRLQDKLQIEVQDSAMLFGVCDETNSLEEDEVYVNL--PERGGGF---GGRT-------- 398

Query: 811  IKGFVVIAKNPCLHPGDIRILEAVDHPELHHL-YDCLVFPQKG--DRPHTNEASGSDLDG 867
                VV+ KNP   PGDIR+ +AVD P L     +C+VF       R   ++ SG DLDG
Sbjct: 399  ----VVVMKNPAYAPGDIRVFKAVDRPSLRICPTNCIVFASSARCGRSPADKMSGGDLDG 454

Query: 868  DLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNA 927
            D +FV+WD +LIP    S  P        +   R     +  + F        LG + N+
Sbjct: 455  DTFFVSWDSSLIPSRVASPQPRPKPIPPLQPPPRGPILAEAAKTFIALHNKMLLGQMSNS 514

Query: 928  HVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSY 987
                A++S   A D+ C+ L  +   A+D  KTG+ V   A L                +
Sbjct: 515  WKETAENSADIAQDKYCLQLVPMIEAALDITKTGEDVDQLAAL----------------F 558

Query: 988  KSNKILGRLYRQSKDAYDEDISVSSEVDINPVDI--HYDTDLEVPESVDFIADAWNQKCS 1045
            +  +   R  ++S+        +   + I P     H+  D E+ ++       W +   
Sbjct: 559  RRTRF--RSGQRSQGCISHLAPLREMITIEPKATFEHWRCDAELVQTETMPLAEWERH-- 614

Query: 1046 YDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEK 1105
                           RE   V      MPK+N+    EL + L      L  +      +
Sbjct: 615  --------------TREGAAV------MPKFNA----ELAKALSAGNDELPYQNAASQRQ 650

Query: 1106 MDSDCELLSEDEKNALFER---------------KASAWYQVTYHPEWVKKSLDLQEQDS 1150
              SD     ++ ++   ER               +A AWY++ Y   W K+         
Sbjct: 651  TSSDSRTRVDETRDRFIERYFGGKTLQDRNSEAMRAVAWYKLGYG--WQKQ--------- 699

Query: 1151 ARSVVLLSFAWIANDYLARIKIRCREMAN 1179
                   SFAW+   YL R+K   R  A 
Sbjct: 700  -------SFAWLGLRYLCRLKALARHGAG 721


>gi|290988183|ref|XP_002676801.1| predicted protein [Naegleria gruberi]
 gi|284090405|gb|EFC44057.1| predicted protein [Naegleria gruberi]
          Length = 1650

 Score =  166 bits (421), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 148/525 (28%), Positives = 243/525 (46%), Gaps = 54/525 (10%)

Query: 490 RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRF----TDK 545
           ++  ++      CG+++  +  S S LR    +FF      +  ++ + M  F    ++ 
Sbjct: 298 KIIDVVPASIECCGKEYRPVGGSLSMLRSDYVYFFDTTAMPACSEVDELMQIFGTYDSNL 357

Query: 546 NIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKL 605
           N  K  +R    F++T  T  +   +   +  ++  +G   +DGIGKI+  +A +++ +L
Sbjct: 358 NPFKLVSRHALNFTTTKETCTINKWKCVKD--ELAIDGSEMTDGIGKISQSIAQQISNQL 415

Query: 606 KLDVNPPPCAYQIRYAGCKGVVACWPAK--GDGIRMSLRESMNKFQSHHTTLEI----CS 659
            L     P A QIR+ G KGV++  P +  GDG+ + LRESM KF       +I    C+
Sbjct: 416 GL--VSVPTALQIRFLGFKGVLSVLPDEDLGDGMDVILRESMCKFNGKEELNKIELVSCT 473

Query: 660 WTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQG 719
             R +P +LN+QII LL+TL +  E F S+       L++ +       +VL   C +  
Sbjct: 474 TAR-KPAYLNKQIILLLTTLGITKETFLSIFLDYFKDLSEKITSPKYFLKVLKENCMD-- 530

Query: 720 NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG 779
            T   + S    P  E  L+ +   +   ++  ++ KA I +      M  +DE   L+ 
Sbjct: 531 -TLPAIQSLNEMPDDE-FLQYLARYLIYDEIKKVQTKAMIPIEKAVIAMSIVDEYKQLKE 588

Query: 780 GQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
            +  +Q+ +   GN + + G++             V I +NPCLHP DI+     D+  L
Sbjct: 589 NEVMVQLGD---GN-YIEDGTQ-------------VFICRNPCLHPSDIQTFTCRDNSLL 631

Query: 840 HHLYD----CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAE 895
              Y      ++FP +G           D DGD  FV WD  LIP    +  P+ ++   
Sbjct: 632 RSKYRPSNAAIIFPTQG----YTSIKICDFDGDRVFVCWDSRLIPDQVSNLSPLTHDNEP 687

Query: 896 AKTLTRPVDQRDIIEFFAKHMVNENL-GTICNAHVVHADHSEYGALDENCILLAELAATA 954
            ++ T         E  +K + N  L G I +A V   D    GA  +  + LA+L   A
Sbjct: 688 MESTTEHS------EVLSKILENGKLLGKISDAWVAIVDSE--GADSDRALELADLFVKA 739

Query: 955 VDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQ 999
           VDFPK GK +++P   K  +YPDFM +    S KSN I+GR+Y +
Sbjct: 740 VDFPKNGKQISLPNWFKDIIYPDFMER-GSISIKSNSIIGRIYEK 783


>gi|449550168|gb|EMD41133.1| hypothetical protein CERSUDRAFT_111700, partial [Ceriporiopsis
           subvermispora B]
          Length = 595

 Score =  166 bits (421), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 149/545 (27%), Positives = 237/545 (43%), Gaps = 72/545 (13%)

Query: 485 TRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGR--- 541
           T + + ++  +  G  +   +++F  F+ + +++     F ED   +V  +K+  G    
Sbjct: 55  TEIRRILKKWVHEGVTVASARYAFFGFTENHVKEGRVICFREDESWTVRHVKEQFGDLDE 114

Query: 542 -FTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKR-NGYVFSDGIGKITPDLAM 599
            +      K AAR+G  FSST  +++V P E   E+PD++  +G + +DG G I    A 
Sbjct: 115 VYQKHGYGKYAARLGLSFSSTVQSLDVAPEEA-LEVPDLRAPDGSLHTDGCGMICDSFAA 173

Query: 600 EVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP--------AKGDGI------RMSLRESM 645
           E+    +L  +     +Q+R  G KG++  +P        AK  GI      +M+ R SM
Sbjct: 174 EICHAHELPADT--TVFQVRRGGIKGLLVRYPDDKFAELCAKHRGIPTPPSIKMAYRPSM 231

Query: 646 NKFQSHHTTLEICSWTRF-QPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDS 704
            K+    T LE+   +R      LN Q I +L TL +  E F  M    L  +  +  D 
Sbjct: 232 LKYSGGPTALELNDCSRCPTSARLNAQFIIMLLTLGINIETFEKMLKEHLDIIGCITHDR 291

Query: 705 DVAFEVLT----AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIF 760
           DVA   L     A+  +        L   ++  +EP++   L   +A Q   L +K  + 
Sbjct: 292 DVALRYLKGELDASDHDTFGQDVYALLLAYHDLSEPYVEWKLKQFQALQYKSLYKKLNLR 351

Query: 761 VPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKN 820
           V    ++ G +DE G+LEG + FI +                    +  V+ G V++A+N
Sbjct: 352 VEESCYVYGVVDEDGILEGDEVFINLP------------------GRTGVVLGNVLVARN 393

Query: 821 PCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP 880
           P   PGD R L AV  P L H   C+VF +K      +  +  DLDGD YFVTWD  LIP
Sbjct: 394 PSYSPGDFRKLRAVHDPRLKHHKHCIVFSRKASHSIPDSMASGDLDGDEYFVTWDPTLIP 453

Query: 881 -----PSKKSWPPMEYNAAEAKT-LTRPVD-QRDIIEFFAKHMVNENLGTICNAHVVHAD 933
                P +++ P     A+ + T +TR    +   I+ F ++  +  LG + N+  +   
Sbjct: 454 SHMATPHQRALPASATRASVSPTRITRQCTLEEAAIDTFIENAFSRLLGKMANSWSI--- 510

Query: 934 HSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK---PKLYPDF-MGKEAYQSYKS 989
                        LAE      +F      +   AHL     KL  DF M K A    KS
Sbjct: 511 -------------LAEATPQLANFTLPLVHLLESAHLGGNVAKLNQDFDMAKRALDQKKS 557

Query: 990 NKILG 994
            + +G
Sbjct: 558 AQAIG 562


>gi|170577358|ref|XP_001893975.1| RNA dependent RNA polymerase family protein [Brugia malayi]
 gi|158599674|gb|EDP37189.1| RNA dependent RNA polymerase family protein [Brugia malayi]
          Length = 261

 Score =  166 bits (420), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 99/262 (37%), Positives = 150/262 (57%), Gaps = 28/262 (10%)

Query: 753 LREKARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
           L  K +I +P+  GR + G +DE G L+ GQ F+Q +        S   ++F       +
Sbjct: 11  LIAKIQIQIPSHLGRSMFGVMDETGQLQWGQIFVQCTRNIWLKTPSPSAAKF-------I 63

Query: 811 IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
           +KG V++ KNPC+  GD+R+ EAVD PELHHL D +VFPQ G RPH +E +GSDLDGD Y
Sbjct: 64  LKGKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDVVVFPQHGPRPHPDEMAGSDLDGDEY 123

Query: 871 FVTWDENLIPPSKKSWPPMEYNAAEA--KTLTRPVDQRDIIEFFAKHMVNENLGTICNAH 928
            V WD+ LI   + + PP+++  + +  K +       ++ +FF  ++  +++G+I NA 
Sbjct: 124 SVIWDQELI--FEHNEPPLDFTKSTSGNKIIDEAQVDLEMRKFFVNYIKQDSIGSISNAF 181

Query: 929 VVHADHSEYGALDENCILLAELAATAVDFPKTG-------------KIVTMPAHLKPKLY 975
           +V+AD   YG   E CI +A+  + AVDFPKTG             K   M    + + +
Sbjct: 182 LVNAD--LYGITSEVCINIAKKHSKAVDFPKTGDAPAPLTRQWTHDKNGNMLPPERAERW 239

Query: 976 PDFMGKEAYQSYKSNKILGRLY 997
           PDFM K    SY S++++G+LY
Sbjct: 240 PDFMCKNHEPSYISSRLVGQLY 261


>gi|403358455|gb|EJY78878.1| RNA-directed RNA polymerase [Oxytricha trifallax]
          Length = 1079

 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 145/575 (25%), Positives = 265/575 (46%), Gaps = 79/575 (13%)

Query: 430 VELSNRVLRKYKDLADRFLRVTFM--DEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRV 487
           +E SN+V+R++    D+FL++ F+  ++ L+ +N   +      I  D  +    ++  V
Sbjct: 256 LEQSNQVIRRHFTNVDKFLKIKFLGGNQELELLNDQYMR-----IKGDYQI----RRNLV 306

Query: 488 FKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKT----------------- 530
              + +IL  G  +  + F FL +S+SQL+D S WF  +  +                  
Sbjct: 307 TNLLWNILGYGISINNKTFKFLGYSNSQLKDRSFWFLRQAVENDLKLNSAIMSMYGIVAI 366

Query: 531 -SVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYV---- 585
            S L+ K+++G      +  C  ++   ++S+   +++   ++   + DI R+ Y     
Sbjct: 367 PSNLNKKEYLGE-----VLNCHGKVANNYTSSDFIIKLERNQIQV-INDIVRHDYQDNRD 420

Query: 586 --FSDGIGKITPDLAMEVAQKLKLDVNPPPCA-YQIRYAGCKGVVACWPAKGDGIRMSLR 642
             F+DG G I+  L+  + Q   L      C+ YQ+R  G KG +     +  G ++ LR
Sbjct: 421 FNFTDGNGLISQKLSNMINQHYGL----KNCSVYQVRIGGAKGTLTV-DQRLKGKKVILR 475

Query: 643 ESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFW-----SMQDSMLSKL 697
            SM K +++ T L I    +   G+ NRQ+I L     V  E F+     ++Q     +L
Sbjct: 476 SSMIKLKNNITDLNIVQCGKAGLGYSNRQVIALFEHDGVHKEEFFELIKKNIQYQFFKQL 535

Query: 698 NQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGF---NPQT---EPHLRGMLTCIRAAQLW 751
           +Q    S   +++   A  EQ  T  +     F    P+    +P  + ++  ++   + 
Sbjct: 536 SQGQAQSVSYYDL---AFLEQHLTHLVGAFKYFIRKKPEILRYDPLFQSIVNQLKQEIMR 592

Query: 752 GLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVI 811
            + EK RI++     L+G  D LG+L+  + F+Q+ +           +   + ++ QVI
Sbjct: 593 QITEKGRIYMKNSVVLLGVPDFLGILQENEIFLQIPKY----------NDLEQGEQYQVI 642

Query: 812 KGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYF 871
           +G VV+ +NP LHP DIR L AVD PE  +L + +VF  +G  P +   +G D DGD Y 
Sbjct: 643 RGDVVVTRNPALHPNDIRKLVAVDRPEFRYLRNAVVFSTQGSIPPSTMMAGGDHDGDRYL 702

Query: 872 VTWDENLIPPSKKSWPPMEYNAAEAKTLTRP----VDQRDIIEFFAKHMVNENLGTICNA 927
           + W+ +++     +   + Y   + K L +     +  + I     K++ ++ LG I + 
Sbjct: 703 IIWERSIVNNFLAN--QIRYKYFDPKRLMKKGRYNIQPQMIASSIVKYVRSDYLGLIDSM 760

Query: 928 HVVHADHSEYGALDENCILLAELAATAVDFPKTGK 962
           H+   D+   G   +  + L  L   AVD+ K GK
Sbjct: 761 HLGLCDY--LGPNHDFTLYLEYLHRQAVDYSKHGK 793


>gi|409044334|gb|EKM53816.1| hypothetical protein PHACADRAFT_125775, partial [Phanerochaete
           carnosa HHB-10118-sp]
          Length = 1091

 Score =  164 bits (415), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 137/484 (28%), Positives = 222/484 (45%), Gaps = 39/484 (8%)

Query: 497 GGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMG 555
            G +L G ++ F   S+SQLR  S +    +    +  +   +G F    + +K A R+G
Sbjct: 91  AGLFLNGTQYRFYGHSNSQLRSRSCFLRQAENDEELDALIYRLGDFLKITSASKRAKRIG 150

Query: 556 QCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNP---P 612
             FS       + P     ++ DI  NG  FSDG G I+   A ++++  ++  +     
Sbjct: 151 LLFSEAKIDWNLQPRWTK-DIDDIVVNGETFSDGCGLISVKFAKQLSKHKRILYHGRPYT 209

Query: 613 PCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQ-SHHTTLEICSW-TRFQPGFLNR 670
           P  YQIRY G KGV+A  P +     +  R+S  KF  + + T  +    T F    LN 
Sbjct: 210 PTVYQIRYRGYKGVLAIDP-RLTTDHVHFRKSQKKFTATQNDTFSVVDHSTPFAFARLNN 268

Query: 671 QIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGF 730
            I+ LL++L +  + F + Q      L +     + AF++L AA   +   A  +L  G 
Sbjct: 269 DIVVLLASLGISSDAFLAKQRGYHEWLQKASDGWEAAFDLLCAA--NRYAMAERLLLEGI 326

Query: 731 NPQTEPHLRGMLTCIRAAQLWGLRE----KARIFVPAGRWLMGCLDELGVLEGGQCFIQV 786
           + +    +R  +  ++ ++L  +R+    + R  VP  R+L G  D   VL  G+  +++
Sbjct: 327 DSKP---VRQEIRALQNSELASIRKNDRLRVRTLVPKSRFLFGVCDPYSVLREGEVHVRI 383

Query: 787 SEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCL 846
             P  G                 +    V++ +NPCL+PGD   L AV HP L HL DCL
Sbjct: 384 MIPRKGIT--------------TLTNVDVLVVRNPCLYPGDCLKLRAVHHPALDHLIDCL 429

Query: 847 VFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQR 906
           VF  +G R   + +SG DLDGD + V WD +L+P  +K     +Y A   + L   + ++
Sbjct: 430 VFASRGRRAAPSMSSGGDLDGDKFTVIWDPDLVP--RKVAQSYDYPAPPER-LNAKIARQ 486

Query: 907 DIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTM 966
           D+ + FA +  +  +G +   H      S  GA+   C  L  L + AVD    G  + +
Sbjct: 487 DLAKHFAAYN-SITMGRVAALHQKWIRLSPAGAMSAECQELNALYSLAVD----GGSIKI 541

Query: 967 PAHL 970
           P  L
Sbjct: 542 PERL 545


>gi|406693965|gb|EKC97304.1| hypothetical protein A1Q2_08384 [Trichosporon asahii var. asahii
           CBS 8904]
          Length = 945

 Score =  162 bits (411), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 161/589 (27%), Positives = 244/589 (41%), Gaps = 108/589 (18%)

Query: 408 DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDE--GLQTMNANVL 465
           ++ V V   ++TPT+   LPP VE S   +R +   +DRFLRV F+DE  G Q +N  VL
Sbjct: 280 ENSVVVYHCLVTPTRLVLLPPGVETSTDAIRNHLSFSDRFLRVEFIDEEDGFQ-VNPTVL 338

Query: 466 SYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS 525
                        +          RVR  +  G  + GR + FLA+ ++  R  S WF +
Sbjct: 339 E-----------ADQMEPAEGTVARVRRAMMNGLNIAGRHYVFLAYGATSARQQSCWFLA 387

Query: 526 ED--GKTSVLDIKKWMGR--FTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDI-- 579
           ED     +V  +K+ +G     D  +A+  ++M                     LPDI  
Sbjct: 388 EDPAKNLTVESVKRNLGLDLLRDTTVARFVSKMAII------------------LPDILH 429

Query: 580 ---KRNGYVFSD-GIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGD 635
              +  GY  SD G  +I+     E  + +  +V                          
Sbjct: 430 ADQQEKGYCESDAGRTEISAVEDKESMENISEEV-------------------------- 463

Query: 636 GIRMSLRESMNKFQSHHTTLEI-CSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSML 694
                 R+S  K+++   T+    +   F+   L+RQ + +++ L VPD +F S+    +
Sbjct: 464 ----YFRQSQVKYRTGSKTMAYGLNIVEFKRAHLSRQAVVIMNHLGVPDAVFESLFILAM 519

Query: 695 SKLNQMLVDSDVAF---EVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLW 751
            +   +L  S  A    E L+          + + S GF  +T+P L  +        L 
Sbjct: 520 REARGLLKRSATAGLLKEDLSLVSQHTHFPVSELYSFGF--KTDPMLLDICRATAVRLLS 577

Query: 752 GLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVI 811
             R  AR+ V     LMG  DEL VL   + F Q  +P      S  G          V+
Sbjct: 578 DYRHNARLQVDQSVKLMGIADELNVLSEHEVFCQYDDPD-----SSDGP--------NVV 624

Query: 812 KGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYF 871
            G   I ++P LHPGDI+++ AVD PELHHL + +VF  +G        S  +L GD Y 
Sbjct: 625 LGACAIMRDPVLHPGDIQLVHAVDRPELHHLRNVIVFSVQG-----QPLSRGNLAGDQYS 679

Query: 872 VTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQ--RDI----IEFFAKHMVNENLGTIC 925
           + WD  LIPP +    P  Y   E  T+ +  D+  RD+     E   K M    +  +C
Sbjct: 680 LIWDPVLIPPEQVE--PSSYTPPEPATVPKVADKHLRDVGSERAELTQKLMA--IVEQLC 735

Query: 926 NAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKL 974
           +AH+  AD   +G   ENC +LA+       F  T   V     + P+L
Sbjct: 736 DAHLAIADR--FGPQSENCKMLADEIKNEPPFVPTDIRVDPEKQIDPRL 782


>gi|440493516|gb|ELQ75976.1| RNA-directed RNA polymerase QDE-1, partial [Trachipleistophora
           hominis]
          Length = 714

 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/190 (45%), Positives = 120/190 (63%), Gaps = 7/190 (3%)

Query: 810 VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDL 869
           V+ G  ++AKNPCLHPGDIR +  V   EL H  + LVF +KG RP  N  SGSDLDGDL
Sbjct: 256 VVVGNAIVAKNPCLHPGDIRKVHCVYKKELLHYKNVLVFSRKGTRPTFNMCSGSDLDGDL 315

Query: 870 YFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHV 929
           YF++WD+ LIP  +    P  Y ++   +    V Q D++ FF +    + LG I NAH+
Sbjct: 316 YFISWDKRLIP--RNEHFPQSYQSSSYLSKEHIVTQ-DMVNFFTRFAKEDELGKISNAHL 372

Query: 930 VHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKS 989
           V++D   +G  D   + LA L +  VDFPKTG I  +P +L+P++YPDFM  E  +SYKS
Sbjct: 373 VYSD--IHGITDPQALKLAYLFSMGVDFPKTGYIARLPQNLEPEVYPDFM--ERGRSYKS 428

Query: 990 NKILGRLYRQ 999
            +++G LYR+
Sbjct: 429 GRVMGVLYRR 438



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 95/194 (48%), Gaps = 25/194 (12%)

Query: 597 LAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLE 656
           +A  +A+KL+L   P   A+QIR+AG KGVV       D I   LR+SM KF S +T LE
Sbjct: 1   VAHMIAKKLRLSFTPT--AFQIRFAGYKGVVVRAHIPHDLI---LRKSMRKFNSTYTILE 55

Query: 657 ICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACA 716
           + ++++    +LNRQII +L  L +P   F S+Q+  L ++ + +  S      L +   
Sbjct: 56  VVNYSQPIECYLNRQIIMILEGLGIPKHNFISLQNEYLMQMYRAINHS------LISKYC 109

Query: 717 EQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGV 776
             G  A +   +G               +       +  K RIFV  G  LMG +DE GV
Sbjct: 110 RIGGVALVDRMSG--------------AVIGRLFREMCAKGRIFVSNGVVLMGVIDEEGV 155

Query: 777 LEGGQCFIQVSEPF 790
           L   + F++V + +
Sbjct: 156 LGENEVFVRVCDDY 169


>gi|353236430|emb|CCA68425.1| related to NAM7-nonsense-mediated mRNA decay protein (RdRP)
           [Piriformospora indica DSM 11827]
          Length = 678

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 142/493 (28%), Positives = 226/493 (45%), Gaps = 48/493 (9%)

Query: 495 LSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAAR 553
           L+ G  L G+K+ F   S+SQLR  S +      +  +      +G F    + AK A R
Sbjct: 97  LTSGVTLNGKKYFFYGHSNSQLRSHSCFLRQGRSEADIHSRILSLGDFKSIDSPAKLAKR 156

Query: 554 MGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL---DVN 610
           +G  FS+      + P+    ++PD+     +FSDG G I+   A  +A+K +     V 
Sbjct: 157 IGLLFSAAEQDSVLDPSHTR-DIPDLMVGDTLFSDGCGLISQAYARLLAKKKQAIFRQVK 215

Query: 611 PPPCAYQIRYAGCKGVVACWP---AKGDGIRMSLRESMNKFQS-HHTTLEICSWT-RFQP 665
             P  +QIRY G KGV+   P   ++ DG  +  R+SM KF    + TL I  ++  +  
Sbjct: 216 YVPSVFQIRYKGYKGVLMLHPPLDSQNDGY-VHFRKSMRKFTGVPNDTLSIIKYSVPYTY 274

Query: 666 GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIM 725
           G LN +I+ LLS+L + DE+      + +S L  +  +   A +   ++  +      I+
Sbjct: 275 GRLNNEIVALLSSLGISDEVLLGKLRAYMSWLRTVCTNLSSALD-FVSSIDKHSLVERIL 333

Query: 726 L----SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQ 781
           L    SAG   + +  L+  +   +   +   ++K R+ V   R L G  D   +L  G+
Sbjct: 334 LEGIDSAGIQRELKKALKQEIEKFKKVDIE--KKKLRVLVNNSRRLFGVCDPFQILREGE 391

Query: 782 CFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHH 841
            F++V+ P  G       S              V+I +NPC+HPGD   L AVD PEL H
Sbjct: 392 VFVRVTMPHAGPRTIHSCS--------------VLIFRNPCMHPGDCLKLRAVDKPELRH 437

Query: 842 LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP---SKKSWPPMEYNAAEAKT 898
           L DC+VF  KG     + +SG DLD   Y + WD++LIP        +PP++    +   
Sbjct: 438 LVDCVVFASKGRHAAPSLSSGGDLDE--YTIIWDKDLIPSRVFEHYLYPPVK--EKKKSV 493

Query: 899 LTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFP 958
           +TR    RD+   FA +  + ++GT    +         GA  + C  L  L +  VD  
Sbjct: 494 ITR----RDLAAHFANYN-SISMGTTARLYWQWVRFHPEGAKSQECQDLNALYSQCVD-- 546

Query: 959 KTGKIVTMPAHLK 971
             G  + +P  L+
Sbjct: 547 --GGSIKIPERLR 557


>gi|167375406|ref|XP_001733628.1| RNA-dependent RNA polymerase [Entamoeba dispar SAW760]
 gi|165905172|gb|EDR30241.1| RNA-dependent RNA polymerase, putative [Entamoeba dispar SAW760]
          Length = 1026

 Score =  160 bits (404), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 255/1082 (23%), Positives = 429/1082 (39%), Gaps = 194/1082 (17%)

Query: 160  DFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAIL 219
            DF+ D   GT    F   + FA+    E    +C  +++  + +I+ ++    F      
Sbjct: 28   DFIGDIGLGT----FVDPVTFAV----EKQFTECYIRIDHNIFDIHTMEYVYRF------ 73

Query: 220  LQLASSPRVWYRTADDDILVLVPFDMLDDDDPW-----IRTTDFTPSGAIGRCNSYRISI 274
              ++S  R+     D +  +L+  D L    P       +  DFTP+  I RC+S   S+
Sbjct: 74   -LISSLHRIIISPNDKNSFILIIKDPLHIHIPSSSFQETQILDFTPTKLINRCHSIYFSL 132

Query: 275  SSRHRGKLSKVITYLGERRVQVDSLSR-PITIREEPDFEVPMSDPFFCIHYEEGISFEIM 333
                     KVI  L   +  +    R  I I    D  + +  P   I Y       ++
Sbjct: 133  PEYS----DKVIQILQNNKQGITHFERLTINIPYIVDSSIDLQ-PKIIIEYPSQQETAVL 187

Query: 334  FLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQ-- 391
            F +  +  +GII   Q++      L   +++V +   K   + K    D  +   L Q  
Sbjct: 188  FQLEGLYLQGIIIPSQITKEIIKSLCQFTKDV-LLFFKKQATMKAQSMDYLRVFSLEQVI 246

Query: 392  ------------EWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRK 439
                        +W  KD EL          +EV   +I     Y        SN +L  
Sbjct: 247  EKCQIDYNGTTKKW--KDEELVLK-------MEVNSSLIRLGYGY------NESNAILED 291

Query: 440  YK-DLADRFLRVTFMD-----EGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRS 493
            +  +   + LR+ F++     + ++ +  +++ +++          SF QK         
Sbjct: 292  FSPEFRVKMLRMKFLNNEKRMQVMERLETDLMCFYMIK-----GYKSFFQK--------- 337

Query: 494  ILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF-SEDGKTSV-------LDIKKWMGRFTDK 545
                      R F FL  + SQ R  + WF  ++DGKT++       +D+K        K
Sbjct: 338  ----------RYFQFLLSNPSQSRSGACWFIDNQDGKTTMAAYQSLGIDLKSP----KIK 383

Query: 546  NIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKL 605
            N      R G   S + ATV + P ++         +GY FSDG+G+I   LA +V  + 
Sbjct: 384  NAGILLMRTGLFGSDSIATVGIYPQQIKVIDDITNESGYTFSDGVGRIGYPLAKKVLNEY 443

Query: 606  KLDVN-----PPPCAYQIRYAGCKGVVACWPAKGDGIRMS----LRESMNKFQSHHTT-- 654
            K + N       P A+QIR+AG KGV+       D + M+     R S  K ++   T  
Sbjct: 444  KRNSNLFIKSDEPYAFQIRFAGVKGVLTV-----DRLDMTETIYFRPSQIKIEALPKTIQ 498

Query: 655  -LEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA--FEVL 711
             L +    +F+ G +N Q+   L  L +P   F S     L K   +  + ++   F+  
Sbjct: 499  KLRVIQIPQFRSGRMNEQLALGLEYLQIPPSNFISSAKQYLKKYFSVTPNREIISLFQRF 558

Query: 712  TAACAEQGNTAAIMLSAGFNP-QTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGC 770
            T     +     IM S G      EP +R     +R + L    +  +  +    +LMG 
Sbjct: 559  TNNPVIEVALKMIMASNGNQKIYEEPFIRATSLVLRMSLLSEKTDFIKFDIDNSAFLMGV 618

Query: 771  LDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRI 830
            +DE G+LE G+ FIQV+ P      +   SR             +++ K P  HPGD  +
Sbjct: 619  MDESGLLEEGEVFIQVTSP----TITIPSSR-------------LLVVKFPATHPGDFVL 661

Query: 831  LEAV----------DHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP 880
            L  V           +  L +L D +VF  KG+RP  N+ SG DLDGD Y + W+   +P
Sbjct: 662  LNNVVDKINLEKKKGYERLTYLRDVIVFSSKGNRPDPNKLSGGDLDGDEYLIIWNPLFLP 721

Query: 881  -PSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADH-SEYG 938
             P   S PP  Y+ +E   L + ++  D+   F   + ++    +    V H +     G
Sbjct: 722  KPEINSHPPAIYD-SEKVHLEKFLEFTDMKRAFLSQLYSK--FVLSRISVSHKESCMNIG 778

Query: 939  ALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYR 998
               E    L++L +  VD PKTG      A +      + + + +  +  +  IL  L  
Sbjct: 779  MCAEVTKSLSQLISITVDAPKTG------AEVDGGEINELVEQVSKINSSNKSILLVL-- 830

Query: 999  QSKDAYDEDISVSSEVDINPV-----DIHYDTDLEVPESV--DFIADAWNQKCSYDGQLN 1051
              K  ++E I +  +     +      IHY+++  V  S+  D I  A   +  ++ ++N
Sbjct: 831  --KSFFNEQIPIIMDTFYTELIELVNTIHYNSEF-VSNSILSDVIPFARKTRNEFNNEIN 887

Query: 1052 GLLEQ---YKVNREEE---LVTGHIWSMPKYN----SRKQGELKERLKHSYSALRKEFRQ 1101
              L++    ++ R  E   L+ G I+     +     +++ E+ + L   YS  RK+  Q
Sbjct: 888  WFLKKSVPQRILRGSEPLQLIIGGIFKKGNVDRLEWEKEEKEINQTLLVIYSNYRKKVEQ 947

Query: 1102 VFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARS-VVLLSFA 1160
                            +     R   A YQVTY  ++   +  L   D  ++ VV L F 
Sbjct: 948  ------------EAGRRKIPLRRLCDACYQVTYDKKYYTNNELL---DCGKNKVVCLLFP 992

Query: 1161 WI 1162
            WI
Sbjct: 993  WI 994


>gi|395327643|gb|EJF60041.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
          Length = 734

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 135/497 (27%), Positives = 213/497 (42%), Gaps = 63/497 (12%)

Query: 503 GRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGR----FTDKNIAKCAARMGQCF 558
           G  + FL ++ SQ++     FF E    +V  + +  G     +      K AAR+G  F
Sbjct: 73  GTVYRFLGYTESQVKAGKLMFFHEGEGWTVERMLESFGDLPGVYLKSGYGKYAARLGLSF 132

Query: 559 SSTYATVEVPPTEVDPELPDIKR-NGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQ 617
           SST  ++++P  E   E+PD+   +G + SDG G I    A ++  +  L   P    +Q
Sbjct: 133 SSTVQSLDIP-LECAIEIPDLTAPDGSLHSDGCGMIRDSFAAQLCARHNLP--PDTTVFQ 189

Query: 618 IRYAGCKGVVACWP-------------AKGDGIRMSLRESMNKFQSHHTTLEICSWTR-F 663
           +R  G KG++  +P              +G    ++ R SM K+    T LE+ +     
Sbjct: 190 VRRGGIKGLLVRYPDNEFDVRCRTHSRTRGGHYMIAYRPSMFKYAGGPTCLELNNHNSPS 249

Query: 664 QPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTA---ACAE--- 717
               LN Q + LL TL VP  +F  +    L  +  +L D + A + +     A AE   
Sbjct: 250 ASARLNVQFMALLLTLGVPFAIFQRLVLDQLDLIGSILTDREKALQYVKGELDAAAEDDF 309

Query: 718 -QGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGV 776
            QG  A ++        +EP++R  L   +  Q   LR K  + +P   +L G +DE GV
Sbjct: 310 AQGLYAMLLARQDL---SEPYVRHKLETFQRKQYITLRNKMSLRIPDSAYLFGVVDEAGV 366

Query: 777 LEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDH 836
           L   +  +        N  ++ G          V+   V++ +NP  +PGD R L AVDH
Sbjct: 367 LAPNEVHV--------NLPNRSG----------VLVRDVIVGRNPSYYPGDFRKLRAVDH 408

Query: 837 PELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPME------ 890
           P L H  +C+VF         +  +G DLDGD+YFV WD  LIPP  +  PP        
Sbjct: 409 PSLRHHRNCIVFSSNAAHSIPDTIAGGDLDGDMYFVCWDPCLIPP--REAPPFSRPQSAT 466

Query: 891 ---YNAAEAKTLTRPVDQ--RDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCI 945
                     + TR +    +  I+ F +   +  LG +        + +   A    C 
Sbjct: 467 AAAQAGTAPASATRQLSNMPKAAIDTFMQLKFSRLLGMMAKEWTRQVELTPDLARSAYCQ 526

Query: 946 LLAELAATAVDFPKTGK 962
            L  L  +A+D  K+G+
Sbjct: 527 ELVPLIESALDLMKSGE 543


>gi|299740231|ref|XP_001838952.2| hypothetical protein CC1G_05505 [Coprinopsis cinerea okayama7#130]
 gi|298404148|gb|EAU82883.2| hypothetical protein CC1G_05505 [Coprinopsis cinerea okayama7#130]
          Length = 1214

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 194/764 (25%), Positives = 307/764 (40%), Gaps = 165/764 (21%)

Query: 404  PKQIDD--IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMN 461
            P+Q  D  + E   +  TP++   + P     NR++RKY+D  D F+RV F DE  Q   
Sbjct: 339  PRQDQDSKLFECHHVTCTPSRFILVGPNPTGFNRIIRKYRDYTDHFIRVDFRDEDGQ--- 395

Query: 462  ANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSA 521
                 YF +    D +       T V  R+  +L GG  + GR F FLA+SSS ++  S 
Sbjct: 396  -----YFRSSFEVDAS-------TLVKTRIGGVLKGGITIAGRHFEFLAYSSSSMKVHST 443

Query: 522  WFF---------------------------------------------------SEDGKT 530
            WF                                                    SE    
Sbjct: 444  WFLNPFEFKDRTGQRIRVTAQRIREDIIPDIPANVQLMRTPSKYAARIALAFTTSESVDG 503

Query: 531  SVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPT-------EVDPELPDIKRNG 583
            + L   +W+G F D   A    ++ +             T       E DP+   +K   
Sbjct: 504  ARLKRDEWVGPFPDIYPAVSHVKVRREEEQEEEGEGESDTDEEESADEYDPQFKMVKLPP 563

Query: 584  YVFSDGIGKITPDLA----MEVAQKLKLDVNPP--PCAYQIRYAGCKGVVACWPAKGDGI 637
              F+DG+G I+ +L      E  +K  L+V+P   P A+ +R  G KGVVA  P     I
Sbjct: 564  --FTDGVGSISKELNDRIWKEYYEKRGLEVHPNFYPSAWMLRMLGYKGVVAVDPEMEGPI 621

Query: 638  RMSLRESMNKFQ------SHHTTLEI-----------CSWTRFQPGF------------L 668
             + LR+SM+KF+      S H+ + I           C   RF   F            L
Sbjct: 622  HLRLRKSMHKFESLEDDLSQHSEVRIEIAEIYDKPGLCYLNRFYLPFFPHLHRLLITPVL 681

Query: 669  NRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGN-------- 720
             R ++ +    + P E+F  +Q   ++  + M +D+ +            GN        
Sbjct: 682  FRPLVMMFDLHDRPLEVFEELQ--RMAVADAMTIDASIDQFSRLMQMHGLGNPFKITYLL 739

Query: 721  --TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE 778
                A+ LS     Q  P  + +        + G+R +ARI VP    L+G  DE    +
Sbjct: 740  EHVEALGLSLEELDQVSPLWKALRDVAFKTVMAGIRYEARIPVPKSWVLVGVADEGPAYK 799

Query: 779  GGQCFIQV---SEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVD 835
            G   +  V    E  +  C  +      +  + + ++G  V+ +NP + PGDI+ + A+ 
Sbjct: 800  GQPGYENVYCLPENCIFVCIQED-----QDSEPEWLEGDCVVTRNPVVRPGDIQKVRAIG 854

Query: 836  HPE------LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPS-KKSWPP 888
             P          L + +VF  +G R   +  +G DLDGD Y V   E L+  + ++   P
Sbjct: 855  KPPRGVKCLFRDLKNVVVFSSQGRRSLPSCLAGGDLDGDKYAVIQYEGLLTETYRREADP 914

Query: 889  MEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLA 948
             E   ++ K   R V   DI +FF ++ VN ++    N       +++ G  D+ C +LA
Sbjct: 915  DEAKDSKFKDKARKVKPEDICDFFVQY-VNRDVLDPFN----EKGYNQQG--DDECSILA 967

Query: 949  ELAATAVDFPKTGKIVTMPAH-----LKPKLY--PDF-------MGKEAYQSYKSNKILG 994
            +L + AVD+PK G  + +        L+PK+   PD+       M    Y  YKS+++LG
Sbjct: 968  KLCSQAVDYPKKGIPIDLDNPEIKRILRPKITHKPDWDRDGSSDMVDTIY--YKSSRVLG 1025

Query: 995  RLYRQSKDAYDEDISVSSEVDINPVDIHYDT--DLEVPESVDFI 1036
             LYR S+   D D  V+      P  + Y     L + E+V+ I
Sbjct: 1026 HLYR-SELFKDTDDPVNDAATDGPSPVPYSDRLSLAIKEAVEAI 1068


>gi|443927204|gb|ELU45719.1| RNA-directed RNA polymerase [Rhizoctonia solani AG-1 IA]
          Length = 1713

 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 130/457 (28%), Positives = 212/457 (46%), Gaps = 62/457 (13%)

Query: 491 VRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD----KN 546
           ++  L+ G ++ G+++ F   S+SQLR  S W       +S  ++ + + +  D     N
Sbjct: 88  IQRALTKGLFINGQQYRFYHHSNSQLRSRSCWL---RAASSDEELDRRIEKLCDVSKINN 144

Query: 547 IAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLK 606
           IAK A R+G  FS      ++ P  +  ++PDI     +FSDG G I+      +A+K K
Sbjct: 145 IAKRAKRIGLLFSGAEIDWDLNPA-LTKDIPDITIAEELFSDGCGLISRRFMQLLAKKKK 203

Query: 607 L---DVNPPPCAYQIRYAGC------------KGVVACWPAKGDGIR--MSLRESMNKFQ 649
           +        P   QIR A C            +GV+A  P      +  +  R+SM K +
Sbjct: 204 IVHRGYRYTPSVIQIR-AVCSFVSHNVTILIIQGVLAIHPQLDQAAQHHVHFRDSMRKLK 262

Query: 650 S-HHTTLEICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA 707
           +    T  +  +++ +Q   LN  II LLS L + +EM  + QD+    +     D   A
Sbjct: 263 TGADNTFSVVDYSKPYQFARLNNDIIVLLSALGITNEMLKTKQDAYFKWIESANKDMSSA 322

Query: 708 FEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGL---------REKAR 758
              L+A   +  + A  +   G + +       +   IR AQ+  +         ++++R
Sbjct: 323 MNFLSALGKD--DLAERVFMDGLDEEQ------VQAQIRNAQVEEVNAFQKPETGKDRSR 374

Query: 759 IFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIA 818
           IF+   R+L G  D  G+LE G+  +++ EP       + G+       L V++      
Sbjct: 375 IFLLQSRFLFGVCDPYGLLEEGEVHVRIMEP-------RKGATTLSNIDLMVVR------ 421

Query: 819 KNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENL 878
            NPCLHPGDI  L AV H  L HL DC+VF  KG R     +SG DLDGD + V WD ++
Sbjct: 422 -NPCLHPGDILKLRAVHHTGLDHLVDCIVFSGKGKRAAPAMSSGGDLDGDRFTVVWDPDI 480

Query: 879 IPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKH 915
           +P  +      +Y AA+ +   R + ++D+   FA +
Sbjct: 481 VP--RTIAQSYDYPAAKTQVNLR-ITRKDLATHFANY 514


>gi|241083173|ref|XP_002409051.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
 gi|215492624|gb|EEC02265.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
          Length = 597

 Score =  155 bits (393), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 186/370 (50%), Gaps = 60/370 (16%)

Query: 398 PELYKGPKQI--DDIVE-----VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRV 450
           PEL+   +++   DIV      +RRL +TP++ + LPP +   NRVLR++    +  +RV
Sbjct: 259 PELFHQFRKVHSSDIVPAGSYLIRRLFVTPSRVFFLPPLLFRENRVLRRFN--PEYAMRV 316

Query: 451 TFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLA 510
           TF D+ LQ ++ +++ +     + D  +  F             L  G  +  R+F FLA
Sbjct: 317 TFRDDNLQQLSRSLMFHRRRDEMVDAIVGKF-------------LREGVAVGNRRFKFLA 363

Query: 511 FSSSQLRDCSAWFFSEDGKTSVLD-IKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVP 568
            S SQLRD  AW ++ED   + +D I+ WMG F+   NIAK  ARMGQCFSST  T++VP
Sbjct: 364 TSCSQLRDHGAWLYAEDSLGNTVDLIRTWMGDFSGIPNIAKKMARMGQCFSSTMETLKVP 423

Query: 569 -PTEVDPELPDI-------KRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRY 620
              ++    PDI           + FSDGIG I+  L ME                +IRY
Sbjct: 424 LKGDIVQMTPDIVGGRHPVSAKEFSFSDGIGMISASL-ME----------------KIRY 466

Query: 621 AGCKGVVACWPA-KGDGIRMSLRESMNKFQ-SHHTTLEICSWTRFQPGFLNRQIITLLST 678
           AG KG++   P  +GD  ++ LR SM KF  S    LE+   +  +   LNR +IT+L  
Sbjct: 467 AGYKGMLCLNPCLQGD--KLVLRPSMRKFDCSSSDNLELVKVSAPRLVCLNRPLITILEQ 524

Query: 679 LNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTA---AIMLSAGFNPQTE 735
           L VP  +F  +Q S + +    LV    A +VL+      G T+   A ++  GF    +
Sbjct: 525 LGVPSRVFLCLQQSTVLQCTDALVCETTALQVLSGF----GGTSLPFAELVRGGFCLTRD 580

Query: 736 PHLRGMLTCI 745
           P +R +L  +
Sbjct: 581 PFVRSLLYAV 590


>gi|302698389|ref|XP_003038873.1| hypothetical protein SCHCODRAFT_64962 [Schizophyllum commune H4-8]
 gi|300112570|gb|EFJ03971.1| hypothetical protein SCHCODRAFT_64962 [Schizophyllum commune H4-8]
          Length = 984

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 153/564 (27%), Positives = 254/564 (45%), Gaps = 89/564 (15%)

Query: 416 LVITPTKAYCLPPEVELSNRVLRKY-KDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVR 474
           +++TPT      P  E SNR++R Y     D FLRV+F++EG        L Y      R
Sbjct: 412 VIVTPTTMILEGPFPERSNRIIRMYDAKYHDCFLRVSFVEEGR-------LQYRFD---R 461

Query: 475 DITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF---FSEDGKTS 531
           ++   +F     + +R+  +L  G ++ G KF FLA+S S L++ + WF   F  DG+ +
Sbjct: 462 EVDGRTF-----IRERIGPLLKKGLHIAGHKFEFLAYSQSALKEHAVWFVKPFRPDGQRA 516

Query: 532 VLD---IKKWMGRFTDKN----IAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRN-- 582
            ++   I   +G F+        A+ AAR+ Q F++T A+V V   E+     DI  +  
Sbjct: 517 DVNAATIIAGIGDFSTSKDRFCPARYAARLSQAFTATDASVFVEAEEIGYH-DDISTSDG 575

Query: 583 GYVFSDGIGKITPDLAMEVAQKLK------LDVNPPPCAYQIRYAGCKGVVACWPAKGDG 636
            Y F+DG+G ++ ++A +   +L+            P ++Q+R  G KG+++    K  G
Sbjct: 576 AYHFTDGVGTMSKEMARDTWTELRRTRKRARKSKGTPASFQVRLMGSKGMLSV-DYKLRG 634

Query: 637 IRMSLRESMNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSML 694
             + LR SM KF++  +  LEI  ++ R    +LNR +I LL  L VP E F   QD  +
Sbjct: 635 RAVCLRPSMIKFEAPDSLNLEIARAFDRPGKYYLNRPLIMLLEGLGVPYETFLKYQDLAV 694

Query: 695 SKLNQMLVDSDVAFEVLTA-ACAEQGNTAAIMLSAGFNPQTEPHLRG------MLTCIRA 747
              ++     + A  +L A          +++L+         HL G      ML     
Sbjct: 695 RDAHRATESLEHAARMLEAFGLGTSFRLPSVLLN--LEKLGIDHLPGDAFYDRMLEFAIN 752

Query: 748 AQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKK 807
             L  L+  ARI +P    L+G  D    L  G+ F  V E               ++ +
Sbjct: 753 HVLRVLKNHARIPIPGAYTLVGVADVHRYLAEGEVFACVKE--------------VDSNR 798

Query: 808 LQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL------HHLYDCLVFPQK---------- 851
           ++ ++G ++I+++P +HPGD++++ A+  P          L + +VF  K          
Sbjct: 799 IEYLEGDILISRSPTIHPGDVQVVRAIGRPPAGSPFAQEPLANTVVFSVKGMLLGPFQAR 858

Query: 852 ----------GDRPHTNEASGSDLDGDLYFVTWDENLIPPSK--KSWPPMEYNAAEAKTL 899
                     G RP  +   G DLDGD+Y +   +   P  +  ++  P  Y AA  K L
Sbjct: 859 HEQHLTVSHSGSRPLPSMLGGGDLDGDVYNLICLDTTHPEFRPARTCDPASYAAAPRKVL 918

Query: 900 TRPVDQRDIIEFFAKHMVNENLGT 923
            RP +  D+ +F    M  +  GT
Sbjct: 919 DRPANMDDVADFVLDFMSFDVRGT 942


>gi|407036402|gb|EKE38145.1| RNA-directed RNA polymerase, putative [Entamoeba nuttalli P19]
          Length = 1026

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 179/713 (25%), Positives = 294/713 (41%), Gaps = 100/713 (14%)

Query: 500  YLCGRKFSFLAFSSSQLRDCSAWFF-SEDGKTSVLDIKKW---MGRFTDKNIAKCAARMG 555
            +   R F FL  + SQ R  + WF  ++DGKT++   +     +     KN      R G
Sbjct: 334  FFQKRYFQFLLSNPSQSRSGACWFIDNQDGKTTMAAYQSLGVDLKSPKIKNAGILLMRTG 393

Query: 556  QCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVN----- 610
               S + ATV + P ++         NGY FSDG+G+I   LA +V  + K + N     
Sbjct: 394  LFGSDSIATVGIYPQQIKVIDDITNENGYTFSDGVGRIGYPLAKKVLNEYKRNSNLFIKS 453

Query: 611  PPPCAYQIRYAGCKGVVACWPAKGDGIRMS----LRESMNKFQSHHTT---LEICSWTRF 663
              P A+QIR+AG KGV+       D + M+     R S  K ++   T   L +    +F
Sbjct: 454  DEPYAFQIRFAGVKGVLTV-----DRLDMTENIYFRPSQIKIEALPKTIQKLRVIQIPQF 508

Query: 664  QPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA--FEVLTAACAEQGNT 721
            + G +N Q+   L  L +P   F S     L K   +  + ++   F+  T     +   
Sbjct: 509  RSGRMNEQLALGLEYLQIPPSNFISSAKQYLKKYFSVTPNREIISLFQRFTNNPVIEVAL 568

Query: 722  AAIMLSAGFNP-QTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
              IM S G      EP +R     +R + L    +  +  +    +LMG +DE G+LE G
Sbjct: 569  KIIMASNGNQKIYEEPFIRATSLVLRMSLLSEKTDFIKFDIDNSAFLMGVMDESGLLEEG 628

Query: 781  QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAV------ 834
            + FIQV+ P      +   SR             +++ K P  HPGD  +L  V      
Sbjct: 629  EVFIQVTTP----TVTIPSSR-------------LLVVKFPATHPGDFVLLNNVVDKINS 671

Query: 835  ----DHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP-PSKKSWPPM 889
                    L +L D +VF  KG+RP  N+ SG DLDGD Y + W+   +P P   S  P 
Sbjct: 672  EKKKGFERLTYLRDVIVFSSKGNRPDPNKLSGGDLDGDEYLIIWNPLFLPKPEIHSHAPA 731

Query: 890  EYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADH-SEYGALDENCILLA 948
             Y+ +E   L + ++  D+   F   + ++    +    V H +     G   E    L+
Sbjct: 732  TYD-SEKVHLEKFLEFTDMKRAFLSQLYSK--FVLSRISVSHKESCMNIGMCAEVTKSLS 788

Query: 949  ELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDI 1008
            +L +  VD PKTG  V              + +   Q  K+N     +    K  ++E I
Sbjct: 789  QLISITVDAPKTGAEVDGGE----------INELVEQVSKTNNSNKSILLVLKSFFNEQI 838

Query: 1009 SVSSEVDINPV-----DIHYDTDLEVPESV--DFIADAWNQKCSYDGQLNGLLEQ---YK 1058
             +  +     +      IHY+++  + +S+  D I  A   +  ++ ++N  L++    +
Sbjct: 839  PIIMDTFYTELIELVNTIHYNSEF-ISDSILPDVIPFARKTRNEFNNEINWFLKKSIPQR 897

Query: 1059 VNREEE---LVTGHIWSMPKYN----SRKQGELKERLKHSYSALRKEFRQVFEKMDSDCE 1111
            + R  E   L+ G ++     +     +++ E+ + L   YS  RK+  Q          
Sbjct: 898  ILRGSEPLQLIIGGVFKKGNVDRLEWEKEEKEINQTLLVIYSNYRKKVEQ---------- 947

Query: 1112 LLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARS-VVLLSFAWIA 1163
                  +     R     YQVTY  ++   +  L   D  ++ VV L F W+ 
Sbjct: 948  --EAGRRKIPLRRLCDVCYQVTYDKKYYTNNELL---DCGKNKVVCLLFPWVV 995


>gi|389743114|gb|EIM84299.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
          Length = 1120

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 142/509 (27%), Positives = 230/509 (45%), Gaps = 62/509 (12%)

Query: 487 VFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGR----F 542
           + K +  ++  G    G +++FL ++ SQL+      F  D K +   + +  G+    +
Sbjct: 86  IPKIMEHVVHEGIQQDGHRYTFLGYTESQLKATQFMMFEGD-KAATQKLLRTFGKLDAVY 144

Query: 543 TDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPD-IKRNGYVFSDGIGKITPD-LAME 600
                 K AAR+G  FSST   ++ P + V  E+PD + R+G + SDG G I    LA+ 
Sbjct: 145 QKSGYGKYAARLGLSFSSTAVGLDAPHSRVT-EIPDLVARDGTLMSDGCGVIRDSVLAII 203

Query: 601 VAQK-LKLDVNPPPCAYQIRYAGCKGVVACWPAK--GDGIRM-----SLRESMNKFQSHH 652
            A + ++ D +      QIR+ G KG++  +P     D + M     ++R SM K+    
Sbjct: 204 CANRGIRRDTH----CIQIRWNGHKGMLVGYPDAFCTDVLHMGENWIAVRPSMKKYDGRL 259

Query: 653 TTLEICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL 711
           T+LEI + +       LN+  I LL T  +P      + +  L KL+  + D D A E+L
Sbjct: 260 TSLEINAVSHPAGSARLNKMYILLLLTAGIPAATIHELLNEQLEKLDLFMTDRDKAIEIL 319

Query: 712 TAACAEQGNTAAIMLSAGFNPQ-----------TEPHLRGMLTCIRAAQLWGLREKARIF 760
               + Q +        GFN +           +EP+++ ++   +  +   LREK  I 
Sbjct: 320 EGTDSAQLDADG----EGFNQELFEGLLASHDLSEPYVKWLMLKYQKLRYRRLREKICID 375

Query: 761 VPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKN 820
           V     L G +DE   L+  + +I +                    +  VI G+VV+ + 
Sbjct: 376 VKLSWLLFGIVDESRTLKPDEVYIHMPH------------------RDGVIIGWVVVCRT 417

Query: 821 PCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPH--TNEASGSDLDGDLYFVTWDENL 878
           P   PGD+R+ +AV  PEL H  +C+VF      P   T+  SG DLDGD ++V  D  L
Sbjct: 418 PAYAPGDMRVFKAVSKPELLHHTNCIVFSGHESCPRSVTDMISGGDLDGDKFWVCSDPRL 477

Query: 879 IPPSKKSWPPMEYNAAEAKTLTRPVDQRDI----IEFFAKHMVNENLGTICNAHVVH-AD 933
           +P     +PP +  +  A   +R    +D+    I+ F        LG I      H A+
Sbjct: 478 VPKRSNIFPPSQRASPAAAVSSRKNSLKDMPQASIDTFVIQHGTSLLGQISRKWTAHTAN 537

Query: 934 HSEYGALDENCILLAELAATAVDFPKTGK 962
           H +  A +E+  L +   A AVD  KTG+
Sbjct: 538 HPDLAASEESRKLASCFEA-AVDLTKTGE 565


>gi|183233879|ref|XP_651309.2| RNA-directed RNA polymerase [Entamoeba histolytica HM-1:IMSS]
 gi|169801365|gb|EAL45936.2| RNA-directed RNA polymerase, putative [Entamoeba histolytica
            HM-1:IMSS]
 gi|449710750|gb|EMD49768.1| RNA-dependent RNA polymerase, putative [Entamoeba histolytica KU27]
          Length = 1026

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 179/716 (25%), Positives = 295/716 (41%), Gaps = 108/716 (15%)

Query: 500  YLCGRKFSFLAFSSSQLRDCSAWFF-SEDGKTSV-------LDIKKWMGRFTDKNIAKCA 551
            +   R F FL  + SQ R  + WF  ++DGKT++       +D+K        KN     
Sbjct: 334  FFQKRYFQFLLSNPSQSRSGACWFIDNQDGKTTMAAYQSLGIDLKSP----KIKNAGILL 389

Query: 552  ARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVN- 610
             R G   S + ATV + P ++         NGY FSDG+G+I   LA +V  + K + N 
Sbjct: 390  MRTGLFGSDSIATVGIYPQQIKVIDDITNENGYTFSDGVGRIGYPLAKKVLNEYKRNSNL 449

Query: 611  ----PPPCAYQIRYAGCKGVVACWPAKGDGIRMS----LRESMNKFQSHHTT---LEICS 659
                  P A+QIR+AG KGV+       D + M+     R S  K ++   T   L +  
Sbjct: 450  FIKSDEPYAFQIRFAGVKGVLTV-----DRLDMTENIYFRPSQIKIEALPKTIQKLRVIQ 504

Query: 660  WTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA--FEVLTAACAE 717
              +F+ G +N Q+   L  L +P   F S     L K   +  + ++   F+  T     
Sbjct: 505  IPQFRSGRMNEQLALGLEYLQIPPSNFISSAKQYLKKYFSVTPNREIISLFQRFTNNPVI 564

Query: 718  QGNTAAIMLSAGFNP-QTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGV 776
            +     IM S G      EP +R     +R + L    +  +  +    +LMG +DE G+
Sbjct: 565  EVALKIIMASNGNQKIYEEPFIRATSLVLRMSLLSEKTDFIKFDIDNSAFLMGVMDESGL 624

Query: 777  LEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAV-- 834
            LE G+ FIQV+                 T  + +    +++ K P  HPGD  +L  V  
Sbjct: 625  LEEGEVFIQVT-----------------TSTVTIPSSRLLVVKFPATHPGDFVLLNNVVD 667

Query: 835  --------DHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP-PSKKS 885
                        L +L D +VF  KG+RP  N+ SG DLDGD Y + W+   +P P   S
Sbjct: 668  KINLEKKKGFERLTYLRDVIVFSSKGNRPDPNKLSGGDLDGDEYLIIWNPLFLPKPEIHS 727

Query: 886  WPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADH-SEYGALDENC 944
              P  Y+ +E   L + ++  D+   F   + ++    +    V H +     G   E  
Sbjct: 728  HAPATYD-SEKVHLEKFLEFTDMKRAFLSQLYSK--FVLSRISVAHKESCMNIGMCAEVT 784

Query: 945  ILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAY 1004
              L++L +  VD PKTG  V              + +   Q  K+N     +    K  +
Sbjct: 785  KSLSQLISITVDAPKTGAEVDGGE----------INELVEQVSKTNNSNKSILLVLKSFF 834

Query: 1005 DEDISVSSEVDINPV-----DIHYDTDLEVPESV--DFIADAWNQKCSYDGQLNGLLEQ- 1056
            +E I +  +     +      IHY+++  + +S+  D I  A   +  ++ ++N  L++ 
Sbjct: 835  NEQIPIIMDTFYTELIELVNTIHYNSEF-ISDSILPDVIPFARKTRNEFNNEINWFLKKS 893

Query: 1057 --YKVNREEE---LVTGHIWSMPKYN----SRKQGELKERLKHSYSALRKEFRQVFEKMD 1107
               ++ R  E   L+ G ++     +     +++ E+ + L   YS  RK+  Q      
Sbjct: 894  IPQRILRGSEPLQLIIGGVFKKGNVDRLEWEKEEKEINQTLLVIYSNYRKKVEQ------ 947

Query: 1108 SDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARS-VVLLSFAWI 1162
                      +     R     YQVTY  ++   +  L   D  ++ VV L F W+
Sbjct: 948  ------EAGRRKIPLRRLCDVCYQVTYDKKYYTNNELL---DCGKNKVVCLLFPWV 994


>gi|440298585|gb|ELP91216.1| RNA-dependent RNA polymerase, putative [Entamoeba invadens IP1]
          Length = 1008

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 161/618 (26%), Positives = 257/618 (41%), Gaps = 84/618 (13%)

Query: 500  YLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD------KNIAKCAAR 553
            Y   R++ F   + SQ R  + WF   D    +  +  +     D      KN      R
Sbjct: 297  YFQNRRYEFFLSNPSQSRSGACWFI--DNTDDITRVAAYNSLGIDLKSAKIKNSGILLMR 354

Query: 554  MGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEV-AQKLKLDVN-- 610
             G   S + AT  + P ++          GY FSDG+G+I+  LA +V A+  +   N  
Sbjct: 355  AGLFGSDSVATAGIYPQQIKRIEDVTNEGGYTFSDGVGRISLSLASKVFAEYRRCGENVI 414

Query: 611  --PPPCAYQIRYAGCKGVVA--CWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPG 666
                P A+QIR+AG KGVV+  C     +      +  +  F      L +    +++ G
Sbjct: 415  RVEEPAAFQIRFAGVKGVVSVDCLDKSENIYFRPSQIKIEAFPERVQKLRVVQIPQYRSG 474

Query: 667  FLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTA---A 723
             +N Q+   L  L +P   F       L K    + + +V    L    A+    A    
Sbjct: 475  RMNEQLALGLEYLEIPIPNFIQCAKEYLRKYFTSIPNDEVV--RLFQKNAKNPTVAIALK 532

Query: 724  IMLSAGFNPQT--EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQ 781
            ++++AG + +   EP ++     +R A L    +  +  +    +LMG +DE G+LE GQ
Sbjct: 533  MVMAAGRDSKIFEEPFVKANSLVLRMAMLSEKSDFIKFDIDNSAFLMGVMDETGILEEGQ 592

Query: 782  CFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAV------- 834
             FIQ+S            S F  + +L  +K        P  HPGD  +L  V       
Sbjct: 593  VFIQLSS----------NSVFVPSSRLLAVKF-------PATHPGDFLLLRNVCENVLFE 635

Query: 835  ---DHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP-SKKSWPPME 890
                +  L +L D +VF  KG RP  N+ +G DLDGD Y V W+   +P   KKS PP  
Sbjct: 636  RKRGYERLAYLKDVIVFSSKGYRPDPNKMAGGDLDGDEYLVIWNPLFLPKLGKKSHPPAN 695

Query: 891  YNAAEAKTLTRPVDQRDIIEFFAKHMVNEN-LGTICNAHVVHADHSEYGALDENCILLAE 949
            Y+  E   L R ++  D+   F   + ++  L  I   H         G  DE    L++
Sbjct: 696  YDFEETH-LERFLEYNDMKHAFVSQLYSKYVLAQISTCH--KKACMSLGMQDEISKALSQ 752

Query: 950  LAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGR-LYRQSKDAYDEDI 1008
            L + AVD PKTG  +                 E  +  +  KI+G+ +    KD +++ +
Sbjct: 753  LISVAVDAPKTGAEIDSGEI-----------NELVERVREQKIVGQSVLIALKDFFNQQV 801

Query: 1009 S-VSSEVDINPVDI----HYDT----DLEVPESVDFIADAWNQKCSYDGQLNGLLEQ--- 1056
              V        +DI    HYDT    D  +PE + F+    N+   ++ Q+   + +   
Sbjct: 802  PLVLDRFHAELMDIVNTLHYDTIFLSDNIIPELIPFVRRTRNE---FNKQIELYINKQIP 858

Query: 1057 YKVNREEE---LVTGHIW 1071
            Y++ R+ E   LV G ++
Sbjct: 859  YRIQRDTERTQLVVGGVF 876


>gi|341879478|gb|EGT35413.1| hypothetical protein CAEBREN_30970 [Caenorhabditis brenneri]
          Length = 1948

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 159/609 (26%), Positives = 263/609 (43%), Gaps = 108/609 (17%)

Query: 641  LRESMNKFQSHHTT-----LEICSWTRFQPGFLNRQIITLLSTLNVPDEM---------F 686
             RES  KF S         +E+  W+   P  LNR  I +L  ++    +          
Sbjct: 905  FRESQMKFHSSTGGKDKWPIELVKWSSPTPVTLNRPFINILDQVSALQSLDCHKRICGRI 964

Query: 687  WSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIR 746
              + D  +      +++ D     L      + +  ++    GF+  TEP  R ++    
Sbjct: 965  EELLDIEMDSFTDCIINEDKCRSKL-EGMPRRVHFPSLWRRNGFSLCTEPFFRALIKAAI 1023

Query: 747  AAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAE 804
               +  L +K  I +P+  GR + G  DE G+L+ GQ F+Q +E    N  +KH S  + 
Sbjct: 1024 DFSMMRLLKKVNIPIPSNVGRSMFGVTDETGLLQYGQVFVQYTE----NVNNKHPSGVSG 1079

Query: 805  ----------TKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDR 854
                      + K+Q I G +++ K P +  GD+R+ EAVD PEL HL + +VFPQ G R
Sbjct: 1080 KILKGKSNFLSFKIQFISGPLMVTKFPSMCEGDVRMYEAVDIPELRHLENVIVFPQNGPR 1139

Query: 855  PHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAK 914
               +E +GSDLDGD Y V WD  L     ++      +  E K     +D+  +  F+A+
Sbjct: 1140 SMPDEMAGSDLDGDEYAVIWDPFLFFERNETAFAYCNDKPEKKLNIDEMDE-GMNVFYAE 1198

Query: 915  HMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHL---- 970
             M  E++G     H+  +D  +YG   + C +LAE  A  +D+ K+G     P+ L    
Sbjct: 1199 FMNQEDVGITATNHLHQSD--QYGINSKVCNILAEKNAMLLDYSKSG---VAPSPLTFNW 1253

Query: 971  -------------KPKLYPDFMGKE--AYQSYKSNKILGRLYRQSKDAYDEDISVSSEVD 1015
                         K +  PDF        Q+Y+S+++LG L+R+ +   D  ++ S+E  
Sbjct: 1254 DKHPETKKWVPPEKSERKPDFANNRFSMNQTYQSSRLLGTLHRELRSVNDV-VATSAEKQ 1312

Query: 1016 INPV--DIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSM 1073
            +  V  D+   T  E  +SV     A  Q   Y+G L  ++E + VN E E+ +G+   +
Sbjct: 1313 VPLVLDDLLVWTGWEQYKSV-----AEAQLLRYNGALRSIMETFGVNTEAEVFSGYYREI 1367

Query: 1074 PKYNSRKQGE----------LKERLKHSYSALRKEFRQVFEKMDSDCE-----LLSEDEK 1118
                S K+ +          ++ ++   Y   R EF + F +   D        + E+E+
Sbjct: 1368 RNRQSDKEQDDMSQYCTENVIETQVTALYRKFRAEFFEEFAEHTPDSPAYMRLTVPENER 1427

Query: 1119 ----------------NALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWI 1162
                            NA+   KA A+Y+  Y          +++ D       LSFAW+
Sbjct: 1428 VWEEKDVLRRVCRKPSNAMMA-KAVAYYRTCYQNA-------VEKGDRK-----LSFAWL 1474

Query: 1163 ANDYLARIK 1171
            A D L  ++
Sbjct: 1475 AYDILNIVR 1483


>gi|302678369|ref|XP_003028867.1| hypothetical protein SCHCODRAFT_236896 [Schizophyllum commune H4-8]
 gi|300102556|gb|EFI93964.1| hypothetical protein SCHCODRAFT_236896 [Schizophyllum commune H4-8]
          Length = 711

 Score =  150 bits (380), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 192/433 (44%), Gaps = 68/433 (15%)

Query: 491 VRSILSGGFYL----CGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKN 546
           +R   SGG  L       K+S+L F+ SQL+D +     ED   +V        RF D  
Sbjct: 67  IRRCQSGGKVLNVDGTNVKYSWLGFTESQLKDGTFLLLREDEHWTV-------DRFLD-- 117

Query: 547 IAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK-RNGYVFSDGIGKITPDLAMEVAQKL 605
                             V+  P E+   +PD +  +G +F+DG G I    A EV   L
Sbjct: 118 --------------ALGNVKSIPDELVATIPDFQATDGTLFTDGCGLIRDSCAAEVCSAL 163

Query: 606 KLDVNPPPCAYQIRYAGCKGVVACWP-----------AKGDGIRMSLRESMNKFQSHHTT 654
           ++  +     +QIR  G KG++  +P            +   ++++LR SM K+    T 
Sbjct: 164 EIPEDT--TVFQIRRGGVKGLLVRYPDVVFDRICRDAGRRGPMKIALRPSMRKYPGGPTV 221

Query: 655 LEICSWTRF-QPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTA 713
           LEI S  R  +   LNR  I LL TL V  E F S+  + L  ++ ++     A + L A
Sbjct: 222 LEIHSVARRPRSARLNRHFIILLLTLGVRLEAFESLLRANLEFIDLIMTSRQRALDALEA 281

Query: 714 ACAEQG----NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMG 769
                G         +L AGF   +EPH+R +L  ++   L  LR+K  I V    +L G
Sbjct: 282 ELDADGAGFDQELHDLLLAGFQ-LSEPHVRCLLERLQKRSLDVLRKKLNIRVKNSFYLFG 340

Query: 770 CLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIR 829
             DELGVL  G+ +I V+                      V  G V++ +NP      +R
Sbjct: 341 VCDELGVLREGEVYINVAG--------------------DVKLGTVLVGRNPAYSTSVLR 380

Query: 830 ILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPM 889
           +L+AV+ P L HL +C+VF   G R  T++  G D+DGD ++VT + +LIPP     PP 
Sbjct: 381 VLQAVNRPGLSHLRNCIVFASGGARSETSKMQG-DVDGDNFWVTTEPSLIPPRMAEPPPF 439

Query: 890 EYNAAEAKTLTRP 902
               + A     P
Sbjct: 440 AQPVSTAPAPMSP 452


>gi|402594185|gb|EJW88111.1| hypothetical protein WUBG_00980 [Wuchereria bancrofti]
          Length = 902

 Score =  149 bits (376), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 130/459 (28%), Positives = 197/459 (42%), Gaps = 83/459 (18%)

Query: 413 VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDE-GLQTMNANVLSYFIAP 471
           VR+ VITPT+   + PE+ + NRVLR++ +  D  LR+ F D+ G     +    Y I  
Sbjct: 472 VRKAVITPTRMLLVVPELLMGNRVLREFDESGDSALRIQFRDDDGAHLRRSRAGLYIIET 531

Query: 472 IVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTS 531
            + +  L                   G ++  R F +LA S+SQ+RD   +FF++     
Sbjct: 532 TIHNCLLR------------------GVHISDRHFVYLASSNSQMRDNGCYFFNDGVDGK 573

Query: 532 VLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG-------- 583
           V  I+  +G+F   NI K  +RMGQCF+ +         E D  L   K N         
Sbjct: 574 VKKIRDKLGKFDHTNIPKLMSRMGQCFTQS--------KESDVTLRRRKYNKTYDVIGGK 625

Query: 584 ------YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPA----- 632
                 ++FSDG+GK++ D A ++A  L L    P C +Q RY G KGV++  PA     
Sbjct: 626 DSCGEPFIFSDGVGKLSEDFAEQIANDLGLGKCVPSC-FQFRYRGLKGVLSVDPALRQRR 684

Query: 633 ----------------KGDGIRMSLRESMNKFQS-HHTTLEICSWTRFQPGFLNRQIITL 675
                           K + + +  R S +KF +     +EI  ++     +LNR +I +
Sbjct: 685 LWAERNGLEDKHAKTEKVNDLDILFRPSQDKFHAPRKEIIEIVKYSCPTFVYLNRPLINI 744

Query: 676 LSTL------NVPDEM---FWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIML 726
           L  +      +V   +      + D  L KL+  L+  D   E L A    + N   + L
Sbjct: 745 LDQVSDMQGFDVHSRIVNRIHGLLDRQLLKLSDALMSEDRCRERL-AEFPRRINVQYLSL 803

Query: 727 SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFI 784
           + GF    EP   G+L       L     K  I +P   GR + G LDE G+L+ GQ F+
Sbjct: 804 ARGFTLTQEPFFHGLLIASVRFALQKQLSKEHIQIPTNLGRTMFGILDETGLLQYGQVFV 863

Query: 785 QVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCL 823
           Q    F  + F K   + A      ++KG     KN  L
Sbjct: 864 Q----FTNDVFLKTPPKAAAKT---IVKGSFSARKNVFL 895


>gi|401885543|gb|EJT49653.1| hypothetical protein A1Q1_01210 [Trichosporon asahii var. asahii
           CBS 2479]
          Length = 957

 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 150/568 (26%), Positives = 230/568 (40%), Gaps = 108/568 (19%)

Query: 429 EVELSNRVLRKYKDLADRFLRVTFMDE--GLQTMNANVLSYFIAPIVRDITLNSFSQKTR 486
           EVE S   +R +   +DRFLRV F+DE  G Q +N  VL             +       
Sbjct: 313 EVETSTDAIRNHLSFSDRFLRVEFIDEEDGFQ-VNPTVLE-----------ADQMEPAEG 360

Query: 487 VFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSED--GKTSVLDIKKWMGR--F 542
              RVR  +  G  + GR + FLA+ ++  R  S WF +ED     +V  +K+ +G    
Sbjct: 361 TVARVRRAMMNGLNIAGRHYVFLAYGATSARQQSCWFLAEDPAKNLTVESVKRNLGLDLL 420

Query: 543 TDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDI-----KRNGYVFSD-GIGKITPD 596
            D  +A+  ++M                     LPDI     +  GY  SD G  +I+  
Sbjct: 421 RDTTVARFVSKMAII------------------LPDILHADQQEKGYCESDAGRTEISAV 462

Query: 597 LAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLE 656
              E  + +  +V                                R+S  K+++   T+ 
Sbjct: 463 EDKESMENVSEEV------------------------------YFRQSQVKYRTGSKTMA 492

Query: 657 I-CSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAF---EVLT 712
              +   F+   L+RQ + +++ L VPD +F S+    + +   +L  S  A    E L+
Sbjct: 493 YGLNIVEFKRAHLSRQAVVIMNHLGVPDAVFESLFILAMREARGLLKRSATAGLLKEGLS 552

Query: 713 AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLD 772
                     + + S GF  +T+P L  +        L   R  AR+ V     LMG  D
Sbjct: 553 LVSQHTHFPVSELYSFGF--KTDPMLLDICRATAVRLLSDYRHNARLQVDQSVKLMGIAD 610

Query: 773 ELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILE 832
           EL VL   + F Q  +P               +    V+ G   I ++P LHPGDI+++ 
Sbjct: 611 ELNVLSEHEVFCQYDDP-------------DSSDGPNVVLGACAIMRDPVLHPGDIQLVH 657

Query: 833 AVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYN 892
           AVD PELHHL + +VF  +G        S  +L GD Y + WD  LIPP +    P  Y 
Sbjct: 658 AVDRPELHHLRNVIVFSVQG-----QPLSRGNLAGDQYSLIWDPVLIPPEQVE--PSSYT 710

Query: 893 AAEAKTLTRPVDQR------DIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCIL 946
             E  T+++  D+       +  E   K M    +  +C+AH+  AD   +G   ENC +
Sbjct: 711 PPEPATVSKVTDKHFPDVGSERAELTQKLMA--IVEQLCDAHLAIADR--FGPQSENCKM 766

Query: 947 LAELAATAVDFPKTGKIVTMPAHLKPKL 974
           LA+       F  T   V     + P+L
Sbjct: 767 LADEIKNEPPFVPTDIRVDPEKQIDPRL 794


>gi|15419599|gb|AAK97084.1|AF293414_1 RNA-dependent RNA-polymerase [Giardia intestinalis]
          Length = 1377

 Score =  147 bits (372), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 130/470 (27%), Positives = 205/470 (43%), Gaps = 101/470 (21%)

Query: 538 WMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDL 597
           W+G   +    K   R G CF  +  T++V   +V   + D + NGYVF+DG G+I+ DL
Sbjct: 260 WLGDIKEVQACKICTRRGLCFGKSLPTIKVREEDVQI-VSDKEYNGYVFTDGAGEISYDL 318

Query: 598 AMEVA---QKLKL----------------DVNPP---------------------PCAYQ 617
            +E+A    KLK+                D N                       P A Q
Sbjct: 319 MLEIALCLDKLKIEQLHKDTETYYDNGFADTNEDSEHTVPHLQPNLKTASNLIQVPSAVQ 378

Query: 618 IRYAGCKGVV---ACWPAKGDGIRMS-LRESMNKFQSHHTTLEICSWTRFQPGFLNRQII 673
           +R+AG KGV+   A  P +      S ++ S+        TLEI    +   G +N QII
Sbjct: 379 MRWAGTKGVLILNALLPPRTILFHKSQVKFSIPNPTETQQTLEILRVAQRSKGMINMQII 438

Query: 674 TLLSTLNVPDEMFWSM--QDSMLSKLNQMLVD-----SDVAFEVLTAACAEQGNTAAIML 726
            LLS + VPD++F ++  QD   + L    VD     +D+   V  A+ +  G     ML
Sbjct: 439 VLLSEMGVPDDVFLNLVYQDLQKTLLFLEPVDRCRHQADLYQLVSRASHSSSGKLILQML 498

Query: 727 SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQV 786
            AG +  TEP L+ +L  ++  QL  ++   R +VP  R  +G  D   +L+ G+ ++ +
Sbjct: 499 MAGVDI-TEPCLQFLLMKLQMMQLRSMKANMRFYVPDSRIFVGVYDCFDLLKEGEVYVGL 557

Query: 787 SEPF-------------LGNCFSKHG----------SRFAETKKLQVIKGFVVIAKNPCL 823
            EP              + N   +            S  A    +  ++G VV+AKNPC 
Sbjct: 558 QEPLSISKWAAATHLKAMSNDTQQEALLPPDLDLQISDIAVGLNISCVEGRVVVAKNPCF 617

Query: 824 HPGDIRILEAVD-----------------------HPELHHLYDCLV-FPQKGD-RPHTN 858
           + GD+RI  AV+                          +  +Y  ++ FP+  + RP T+
Sbjct: 618 YRGDVRIYHAVNIFERLRREASRQNLKPVLPSFVAQEAIRGMYRGVICFPKYYEGRPMTD 677

Query: 859 EASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDI 908
             SGSDLDGD+Y+V+WD +L+   ++ + P  + A   +     +D RDI
Sbjct: 678 CLSGSDLDGDIYWVSWDASLLGTIQREYEPASFQANPGEIDAHALDLRDI 727


>gi|405974297|gb|EKC38953.1| Translocon-associated protein subunit beta [Crassostrea gigas]
          Length = 1284

 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/267 (37%), Positives = 145/267 (54%), Gaps = 31/267 (11%)

Query: 405 KQIDDI----VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTM 460
           K+ DD+      +RR+V+TPTK    P E  + NR++R+Y +  + F+R+ F DE  + +
Sbjct: 449 KEADDMPPGYSNIRRIVLTPTKHVFYPKEPIVQNRIIRQYAE--EYFIRIVFRDEDYEKV 506

Query: 461 NANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCS 520
           +A      IAP   D  +++  Q           L  GF +  R++ FL  S+SQLR+  
Sbjct: 507 SA------IAPNSLDSVIDAMKQ----------FLCAGFRILTRRYEFLGCSNSQLREHG 550

Query: 521 AWFFSEDGKTSVLDIKKWMGR-FTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPEL--- 576
            WFF  +  T+   I+   G  + ++ +A   +R G CFS++  TV+V     D EL   
Sbjct: 551 FWFFCPNDDTNAQMIRDNCGDIYLERCVASYVSRFGLCFSASRDTVDVGMQ--DGELVHQ 608

Query: 577 PDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDG 636
            DI+ N Y FSDGIGKI+P LA +V + L   V   P A+QIRY GCKGVV+  P  G+ 
Sbjct: 609 KDIEWNNYCFSDGIGKISPCLANKVTKALGYKVK--PSAFQIRYGGCKGVVSQDPDLGEE 666

Query: 637 IR-MSLRESMNKFQSHHTTLEICSWTR 662
              + +RESMNKF S    LEI   T+
Sbjct: 667 KDVLVIRESMNKFNSESKKLEILQVTK 693


>gi|159120120|ref|XP_001710276.1| RNA-directed RNA polymerase, putative [Giardia lamblia ATCC 50803]
 gi|21666386|gb|AAM73688.1|AF393743_1 RNA dependent RNA polymerase [Giardia intestinalis]
 gi|157438394|gb|EDO82602.1| RNA-directed RNA polymerase, putative [Giardia lamblia ATCC 50803]
          Length = 2001

 Score =  146 bits (369), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 130/470 (27%), Positives = 205/470 (43%), Gaps = 101/470 (21%)

Query: 538 WMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDL 597
           W+G   +    K   R G CF  +  T++V   +V   + D + NGYVF+DG G+I+ DL
Sbjct: 428 WLGDIKEVQACKICTRRGLCFGKSLPTIKVREEDVQI-VSDKEYNGYVFTDGAGEISYDL 486

Query: 598 AMEVA---QKLKL----------------DVNPP---------------------PCAYQ 617
            +E+A    KLK+                D N                       P A Q
Sbjct: 487 MLEIALCLDKLKIEQLHKDTETYYDNGFADTNEDSEHTVPHLQPNLKTASNLIQVPSAVQ 546

Query: 618 IRYAGCKGVV---ACWPAKGDGIRMS-LRESMNKFQSHHTTLEICSWTRFQPGFLNRQII 673
           +R+AG KGV+   A  P +      S ++ S+        TLEI    +   G +N QII
Sbjct: 547 MRWAGTKGVLILNALLPPRTILFHKSQVKFSIPNPTETQQTLEILRVAQPSKGMINMQII 606

Query: 674 TLLSTLNVPDEMFWSM--QDSMLSKLNQMLVD-----SDVAFEVLTAACAEQGNTAAIML 726
            LLS + VPD++F ++  QD   + L    VD     +D+   V  A+ +  G     ML
Sbjct: 607 VLLSEMGVPDDVFLNLVYQDLQKTLLFLEPVDRCRHQADLYQLVSRASHSSSGKLILQML 666

Query: 727 SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQV 786
            AG +  TEP L+ +L  ++  QL  ++   R +VP  R  +G  D   +L+ G+ ++ +
Sbjct: 667 MAGVD-ITEPCLQFLLMKLQMMQLRSMKANMRFYVPDSRIFVGVYDCFDLLKEGEVYVGL 725

Query: 787 SEPF-------------LGNCFSKHG----------SRFAETKKLQVIKGFVVIAKNPCL 823
            EP              + N   +            S  A    +  ++G VV+AKNPC 
Sbjct: 726 QEPLSISKWAAATHLKAMSNDTQQEALLPPDLDLQISDIAVGLNISCVEGRVVVAKNPCF 785

Query: 824 HPGDIRILEAVD-----------------------HPELHHLYDCLV-FPQKGD-RPHTN 858
           + GD+RI  AV+                          +  +Y  ++ FP+  + RP T+
Sbjct: 786 YRGDVRIYHAVNIFERLRREASRQNLKPVLPSFVAQEAIRGMYRGVICFPKYYEGRPMTD 845

Query: 859 EASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDI 908
             SGSDLDGD+Y+V+WD +L+   ++ + P  + A   +     +D RDI
Sbjct: 846 CLSGSDLDGDIYWVSWDASLLGTIQREYEPASFQANPGEIDAHALDLRDI 895


>gi|769816|emb|CAA83245.1| unnamed protein product [Phanerochaete chrysosporium]
          Length = 953

 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 144/504 (28%), Positives = 229/504 (45%), Gaps = 68/504 (13%)

Query: 380 VFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRK 439
           +F  C+R     E++       +GP    DI +   + +TPT      P  E SNRV+R 
Sbjct: 404 LFTRCER-----EYVPVKRRRLRGPPN-QDIFDCLHVTVTPTTHRLDGPYPERSNRVMRM 457

Query: 440 YKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGF 499
           Y D  D F+R+ F+DE       +          R++   +F     + +RV  IL+ G 
Sbjct: 458 YPDYHDCFVRINFVDETDLQFRFD----------REVDGRAF-----IKRRVGEILTNGI 502

Query: 500 YLCGRKFSFLAFSSSQLRDCSAWFFSE----DGK-TSVLDIKKWMGRFT-DKNIAKCAAR 553
            + GR F FLA+S S L++ + WF  E    +G   +   I   +G FT D  +  C AR
Sbjct: 503 DIAGRHFEFLAYSQSALKEHAVWFVKEFMLPNGTIVNARTIIAGLGDFTRDHQLIYCPAR 562

Query: 554 MG----QCFSSTYATVEVPPTEVDPELPDIK--RNGYVFSDGIGKITPDLAMEVAQKLKL 607
            G    Q F++T ++V+V P EV  E+ DI+     + F+ G+G ++  LA ++ +KL  
Sbjct: 563 YGARISQAFTATDSSVKVQPDEVF-EIDDIEGPTGTWCFTSGVGTMSVQLARDIWKKLAA 621

Query: 608 DVNPP-----PCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHH--TTLEIC-S 659
                     P A QIR+ G KG+++       G  + LR SM KF++    T +EI  +
Sbjct: 622 RRGGSRWKTYPRALQIRFRGSKGMLSV-DHTLQGRAICLRPSMIKFEAPESLTDIEIARA 680

Query: 660 WTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL-TAACAEQ 718
           + R  P +LNR +I ++  L VP E+F  +QD  + +  + +   + A  +L T      
Sbjct: 681 FNRPGPFYLNRPLIMIMEHLGVPYEVFEELQDMAVEEAQESVESLEKAARLLETFGLGAS 740

Query: 719 GNTAAIMLS---AGFNPQT-EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDEL 774
               +I LS    G  P T +   + M+       L  L+  ARI VP    L+G  D  
Sbjct: 741 YRLTSIFLSLHKLGVGPLTGDEFWQKMMDFAINHVLRELKHHARIPVPNAWNLVGVADVH 800

Query: 775 GVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAV 834
           G LE  + F        G  +   G+          + G  ++ ++P +HPGD+++   +
Sbjct: 801 GYLEQDEVF--------GCIYPLDGT------GPIYLDGPTLVTRSPTIHPGDVQVAHGI 846

Query: 835 DHP------ELHHLYDCLVFPQKG 852
             P      E   L + LVF  KG
Sbjct: 847 GRPPRGSPFEHESLRNTLVFSTKG 870


>gi|313244084|emb|CBY14941.1| unnamed protein product [Oikopleura dioica]
          Length = 784

 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 150/524 (28%), Positives = 224/524 (42%), Gaps = 71/524 (13%)

Query: 538  WMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPEL-----PDIKRNGYVFSDGIG 591
            + G F   K ++K AAR+G   S T AT+ VP  +   E      P      Y F+DG G
Sbjct: 277  YFGNFNKIKIVSKYAARIGLLMSPTAATIFVPDKKWAREKDIVGGPPKNPEKYEFTDGCG 336

Query: 592  KITPDLAMEVAQKLKLD-------VNPPPCAYQIRYAGCKGVVACWPAKGDGIR--MSLR 642
            ++   +A     KL L            P   Q R  GCKG+    P   D  +  + +R
Sbjct: 337  RMCTRVAEMFRDKLNLKHLYRHQGAYCVPSVIQFRMMGCKGIFVHDPTLDDADKPWVMIR 396

Query: 643  ESMNKFQSHHTTLE---------------ICS--WTR-FQPGFLNRQIITLLSTLNVPDE 684
            +S  KF  +  T++               +CS  ++R F  G LN Q + LL  L + D 
Sbjct: 397  DSQWKFDWNMNTVKHLERDKDGNPGRAMGVCSNGFSRPFSFGKLNEQFVVLLDALGLEDN 456

Query: 685  MFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTC 744
             F ++Q     +L + + D   AFE+L++   ++ + A ++     +    P +   L  
Sbjct: 457  TFLNIQKDHFERLKRCMDDRIAAFEILSSE--KRMDEADLLDRTDEDSPYPPEVINTLKR 514

Query: 745  IR-------AAQLWGLREK----ARIFVP--AGRWLMGCLDELGVLEGGQCFIQVSEPFL 791
             R       +A+     EK    A  ++P    R + G  D  G L  G+CF+Q+++ + 
Sbjct: 515  FRKPVFDLPSAKPDRREEKNIKNAAFYIPISKSRNVYGVADISGKLRKGECFVQITQ-YE 573

Query: 792  GNCFSKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQ 850
                 K G+   E + L +  G  V++ K P  HPGD R+L+    PEL HL D +VFP 
Sbjct: 574  EVVDKKRGTSRKERRMLPLGNGAKVLVNKCPTYHPGDFRVLQNTHVPELMHLCDVIVFPV 633

Query: 851  KGD-------RPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPV 903
                      RPH +E   SDLDGD YFV+WDE LIP   +   P       A       
Sbjct: 634  YDKVYNPDLKRPHPHEMHESDLDGDEYFVSWDERLIPEKLEKPFPCPDKTIGANIKDEIT 693

Query: 904  DQRDIIEFFA-KHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGK 962
             Q  I EF A +H+V    G I N  +  A  +  GA    C  LA+L   +VD  K G 
Sbjct: 694  VQDLIREFTASEHLV----GRINNLFIDWAKLA--GASSNECRQLAKLFNQSVDTAKHGG 747

Query: 963  IVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDE 1006
             V +  HL         G+     +K+++   +   Q    YD+
Sbjct: 748  KVEISKHLT-------RGRRPTAPWKNDRANEKAAVQGDSRYDD 784


>gi|66736429|gb|AAY54273.1| RNA-dependent RNA polymerase [Caenorhabditis remanei]
          Length = 200

 Score =  144 bits (362), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/203 (40%), Positives = 122/203 (60%), Gaps = 13/203 (6%)

Query: 764 GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCL 823
           GR ++G +DE G L+ GQ F+Q +         +   +  + +  QV+ G V++ KNPC+
Sbjct: 6   GRSMLGIVDETGRLQYGQIFVQYTRNSNEKLPPRSNMQHMKVQGSQVVTGTVLLTKNPCI 65

Query: 824 HPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSK 883
             GD+RI EAVD PELHHL D +VFPQ G RPH +E +GSDLDGD Y V WD+ L+    
Sbjct: 66  VTGDVRIFEAVDIPELHHLCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQQLL--LD 123

Query: 884 KSWPPMEYNAAEAKTLTRPVDQRDII-----EFFAKHMVNENLGTICNAHVVHADHSEYG 938
           K+  P ++   E K +  P D R++I     EF+ K++  +++GTI N H+ ++D  +YG
Sbjct: 124 KNEAPFDF-TVEKKEM--PYD-REMIDQLMHEFYVKYLKLDSVGTISNNHLHNSD--QYG 177

Query: 939 ALDENCILLAELAATAVDFPKTG 961
                C+ LA+    AVDF K+G
Sbjct: 178 LNSRVCMDLAKKNCQAVDFTKSG 200


>gi|405974296|gb|EKC38952.1| Putative RNA-dependent RNA polymerase SHL2 [Crassostrea gigas]
          Length = 520

 Score =  143 bits (361), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 90/253 (35%), Positives = 139/253 (54%), Gaps = 24/253 (9%)

Query: 413 VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
           VRR V+TP++   L  E    NR+LR+Y   AD F+R+ + DE  + ++           
Sbjct: 255 VRRAVLTPSRLILLSKEPVYFNRILRQYN--ADYFIRLVYRDEDFEKISGM--------- 303

Query: 473 VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE-DGKTS 531
                   +     + + ++     GF +  R + FL  S+SQLR+ S WFFS  DG T+
Sbjct: 304 -------KYRGPQHLLEDMKQHFINGFTIYDRHYEFLGCSNSQLREHSFWFFSSYDGITA 356

Query: 532 VLDIKKWMGRFT-DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGI 590
              I++  G    ++ +A   +R G CFSS++ T+ +   E      D+ RNGY F+DGI
Sbjct: 357 EF-IRQSSGDLAKERCVASYVSRFGLCFSSSWNTLTIEEHEEVRFEKDVTRNGYCFTDGI 415

Query: 591 GKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR-MSLRESMNKFQ 649
           GKI+  LA +VA+   +D+N  P A+QIRY GCKGV+A  P+ G+    + +RESM KF+
Sbjct: 416 GKISKRLAAKVAK--SMDLNIVPSAFQIRYGGCKGVIAIDPSLGENREIIVIRESMKKFE 473

Query: 650 SHHTTLEICSWTR 662
           S+  +LE+   +R
Sbjct: 474 SNSKSLEVLQVSR 486


>gi|406867650|gb|EKD20688.1| RNA-dependent RNA polymerase 1 [Marssonina brunnea f. sp.
           'multigermtubi' MB_m1]
          Length = 901

 Score =  143 bits (360), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 157/574 (27%), Positives = 237/574 (41%), Gaps = 134/574 (23%)

Query: 409 DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTM--NANVLS 466
           ++  + R  +T T      P++E +NR LRKYK+  D F+RV+F  E  + +  ++ V +
Sbjct: 367 NVTSIHRARVTATSITLSGPQLESNNRTLRKYKEFHDYFMRVSFGAEDGEPLMYHSKVSN 426

Query: 467 YFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE 526
           Y +                    R + I   G  + GR FSFL F  S LR+ S W  + 
Sbjct: 427 YHV-----------------YHGRFQEIPDRGVKIGGRVFSFLGFPQSSLRERSYWLVAP 469

Query: 527 DGKTSVL----DIKKWMGRFT-DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKR 581
            G    L    DI   +G FT  ++ AKCAAR+GQ FS T + + + P  V   + DIKR
Sbjct: 470 FGSLGSLLLDRDITGGLGNFTLIRSPAKCAARIGQAFSDTRSFMTIDPLIVR-NMEDIKR 528

Query: 582 NGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSL 641
           +GYVFSDG G I                     A  +   G KG+++   ++ DG ++ L
Sbjct: 529 SGYVFSDGCGTI---------------------ALSLLCLGAKGMISL-DSRLDGDQLCL 566

Query: 642 RESMNKFQ-SHHTTLEICSWT-RFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN- 698
           R+SM KF  S    +EI   T R  P ++NR+ I +        E+  S++    S +N 
Sbjct: 567 RDSMIKFDGSTSNDIEIYDITYRPLPVYMNRKFIKIDHGEPATKEI-TSLRMITESPINA 625

Query: 699 ------QMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWG 752
                 Q + DS    E++     +  + A I +  G+      HL G+           
Sbjct: 626 SSFLKRQGVGDSFQFPELILRLLRKLKHEARIPVPRGW------HLHGI----------- 668

Query: 753 LREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIK 812
                             +DE G L+ G+ F    E  + N  +                
Sbjct: 669 ------------------MDETGSLKEGEIFCVGVEEGVKNVITSER------------- 697

Query: 813 GFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFV 872
             +VI + P L PGD+RI +AV  P    L                E  G DLDGD ++V
Sbjct: 698 --LVITRAPALDPGDVRIAKAVMPPAESPLM---------------ELGGGDLDGDRFYV 740

Query: 873 TWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQ---RDIIEFFAKHMVNENLGTICNAHV 929
            WD++ +P +       E+ AAE  +L R +        I   +  ++    G++ +  V
Sbjct: 741 IWDDDALPEN-------EFEAAEYPSLPRWILAALFNAKISLDSALIIKRTSGSVPSQLV 793

Query: 930 VHADH--SEYGALDENCILLAELAATAVDFPKTG 961
             +       G   E C   A L   AVDFPKTG
Sbjct: 794 TASQQIICRGGTDAEKCKTFAMLHGVAVDFPKTG 827


>gi|336378304|gb|EGO19462.1| hypothetical protein SERLADRAFT_478899 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 496

 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 124/398 (31%), Positives = 183/398 (45%), Gaps = 54/398 (13%)

Query: 742  LTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSR 801
            L C     L  L+ +A I VP    L+G  DE G L  G+ +  V +             
Sbjct: 47   LHCASTHALRELKYRAHIAVPGSYTLLGVSDEWGCLREGEIYATVQD------------- 93

Query: 802  FAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEAS 861
               T   + I+G VVI ++P +HPGD++ + AV  PEL HL + +VF  +GDR   +  +
Sbjct: 94   -ERTGLYKPIEGPVVITRSPQVHPGDLQFVTAVRRPELSHLTNVVVFSCEGDRSLASCLA 152

Query: 862  GSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENL 921
            G DLDGD + +  DE L P  +K   P  Y++   K  T P    D+++F   ++ ++ +
Sbjct: 153  GGDLDGDDFNLILDEALFP--EKVAMPGAYDSLPIKQTTSPCGISDVVDFVMNYIESDLI 210

Query: 922  GTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMP--AHLKPKLYPDFM 979
            G I   H+  AD  + G     C+ LA+ A+ AVD+PKTG  V M     L  K  PDF+
Sbjct: 211  GYISILHLRFADIKDPGC--NECLKLAQFASHAVDYPKTGSPVKMQDLPQLPGKERPDFL 268

Query: 980  GKEAYQS-----YKSNKILGRLYRQSKDAYDEDISVSSEVDINPVD--IHYDT------- 1025
             +E         Y+S K+LG+LYR+      E I V    D +P D  +  DT       
Sbjct: 269  AREGANLQGEDFYQSQKLLGKLYRRV--PVSEWIPVPWNRDYSPSDGGVIRDTLMRFNFR 326

Query: 1026 DLEVPE----SVDFIADAWNQKCSYDGQLNGLLEQYKVNR-------EEELVTGHI---W 1071
             L++P     S D I +       Y  QL  + + + ++R       E ELV+G I   W
Sbjct: 327  QLDLPSLDTPSDDLIEEMGYLLEDYSEQLLVIAKTHTISRHKDIYVSEAELVSGTIMANW 386

Query: 1072 SMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSD 1109
            S    + RK+ E    +      L K  RQ  +  D D
Sbjct: 387  S----DHRKRREAIGAMNLQTQVLAKNIRQALQWSDPD 420


>gi|34447177|dbj|BAC84970.1| RNA-directed RNA Polymerase [Vigna unguiculata]
          Length = 257

 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 141/264 (53%), Gaps = 20/264 (7%)

Query: 910  EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAH 969
            E+F  ++VN++LG I NAH V AD+    A+ E C+ LA+L +TAVDFPKTG    +P  
Sbjct: 3    EYFTNYIVNDSLGIIANAHTVFADNQPRKAMSEECLKLAKLFSTAVDFPKTGVPAVIPRV 62

Query: 970  LKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPV-DIHYDTDLE 1028
            L  K YPDFM K   ++Y S  ++G+LYR+  +A       S       V    YD D+E
Sbjct: 63   LYVKEYPDFMEKSDKETYISPNVIGKLYREVIEAISSSDGGSISSFTREVARTSYDFDME 122

Query: 1029 VPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPK-YNSRKQGELKER 1087
            V   +D++ DA+  K +YD +L  L++ Y +  E E+++G+I  + K +N R+  E    
Sbjct: 123  VDGFLDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILSGNIIKLSKCFNKRRDAEA--- 179

Query: 1088 LKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQE 1147
            +  + ++LRK+ R  F + ++      +DE       KASAWY VTYHP +         
Sbjct: 180  INKAVTSLRKDARSWFNEGNN-----GDDEY-----AKASAWYHVTYHPSY----WGCYN 225

Query: 1148 QDSARSVVLLSFAWIANDYLARIK 1171
            Q   R    LSF W     L +IK
Sbjct: 226  QGMGRD-HYLSFPWCVFPQLLQIK 248


>gi|253743974|gb|EET00246.1| RNA-directed RNA polymerase, putative [Giardia intestinalis ATCC
           50581]
          Length = 1989

 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 128/490 (26%), Positives = 207/490 (42%), Gaps = 112/490 (22%)

Query: 537 KWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPD 596
           KW+G  ++    K   R G CF  +  T++V   +V   +PD + + YVF+DG G+I+ D
Sbjct: 428 KWLGTISELQACKICTRRGLCFGKSLPTIKVKEQDVHI-IPDRQYHDYVFTDGAGEISYD 486

Query: 597 LAMEVAQKL------KLDVN--------------------------------------PP 612
           L +E+A  L      +L+ N                                        
Sbjct: 487 LMLEIAVCLDQIKTEQLNTNRDIGNFSDYNDDNEGEDGGTEDATLDLQTDLKVLSNSIQV 546

Query: 613 PCAYQIRYAGCKGVV---ACWPAKGDGIRMSLRESMNKFQ-----SHHTTLEICSWTRFQ 664
           P A Q+R+AG KGV+   A  P +     + L +S  KF          TLE+       
Sbjct: 547 PSALQMRWAGAKGVLILNALLPPRT----ILLHKSQVKFTIPNPTETQQTLEVLRVAYPS 602

Query: 665 PGFLNRQIITLLSTLNVPDEMFWSMQDSMLSK-------LNQMLVDSDVAFEVLTAACAE 717
            G +N QII LLS + VPDE+F ++    L K       +++    +D+   V  A+ + 
Sbjct: 603 RGMINMQIIVLLSEMGVPDEVFLNLVHQDLQKALVFSEPMDRCRHQADLYQLVSRASRSS 662

Query: 718 QGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVL 777
            G     ML AG +  TEP L+ +L  ++  QL  ++   R  VP  R L+G  D   +L
Sbjct: 663 SGKLILQMLMAGVDI-TEPCLQFVLMKLQMMQLRSMKANMRFSVPDSRILIGIYDCFNLL 721

Query: 778 EGGQCFIQVSEPFLGN--------------------CFSKHGSRFAETKKL--QVIKGFV 815
           + G+ +I +  P + +                      S H   F    +     ++G V
Sbjct: 722 KEGEVYIGLQSPLVISKWVASTHLKAISDAQHDTSISLSSHPHIFDMASEFGPSCVEGRV 781

Query: 816 VIAKNPCLHPGDIRILEAVDHPE-----------------------LHHLYDCLV-FPQK 851
           V+AKNPC + GD+R+ +AV+  E                       +  +Y  ++ FPQ 
Sbjct: 782 VVAKNPCFYRGDVRVYQAVNLLERLKREASEKTLVPSLPPFVTQEAIKAMYKGVICFPQY 841

Query: 852 GD-RPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIE 910
            + RP  +  SGSDLDGD+Y+V+WD ++I   +  + P  + A   +  T   +  D+  
Sbjct: 842 YEGRPMADCLSGSDLDGDIYWVSWDASIIGTIQYEYEPASFQANSGEINTCAPNLEDVEA 901

Query: 911 FFAKHMVNEN 920
                + NE+
Sbjct: 902 GLGNLLRNES 911


>gi|290976086|ref|XP_002670772.1| predicted protein [Naegleria gruberi]
 gi|284084334|gb|EFC38028.1| predicted protein [Naegleria gruberi]
          Length = 1384

 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 124/409 (30%), Positives = 176/409 (43%), Gaps = 99/409 (24%)

Query: 531 SVLDIKKWMGRFT-DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDG 589
           S+ D+K W    T ++++     ++ Q          V PT    E   I   G +F+DG
Sbjct: 324 SIHDVKTWAIPDTLNRDLYFENNKLKQSLRLALFNTPVIPTIGVSEYTVINDEG-LFTDG 382

Query: 590 IGKITPDLAMEVAQKLKLDVNPP----------------------------PCAYQIRYA 621
            G I+ +LAM+V + ++   N                              PCAYQIR+ 
Sbjct: 383 CGFISLELAMKVYEIVRKSKNLLKYQSKQSMDEDGIYEENDGVEFLVNEYLPCAYQIRFR 442

Query: 622 GCKGVVACWP--AKGDGIRMSLRESMNKFQSHHTTLEI------------CSWTRFQPGF 667
           G KG+V   P   K  G  + LR+SM K +  +T  +I            C + R     
Sbjct: 443 GAKGMVYIHPNAEKVYGHHLVLRKSMMKIEHPNTDDDIINNLCIVGYSSPCDFAR----- 497

Query: 668 LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQ------------MLVDSDVAFEVLTAAC 715
           +N  I+ +L      DE   + Q  +   LNQ             + +SD+  + +    
Sbjct: 498 INSTIMHILE--GCEDE---TKQGKIFEILNQKACKHIENLMKNYISESDI--DKVFDQY 550

Query: 716 AEQG-----NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGC 770
            +QG     N  +I+ S      T P+   +L+              RI   + R L G 
Sbjct: 551 VKQGDYASLNVLSILKSKKLAFLTGPYRNQILSL-------------RIPCYSSRRLYGI 597

Query: 771 LDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRI 830
            D  GVL+ GQ FIQVS                + KK  VI+  V++ K PCLH GD+R 
Sbjct: 598 ADPFGVLKEGQIFIQVSS-------------LNDPKKKNVIENTVIVTKEPCLHRGDLRK 644

Query: 831 LEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
           LEAV+ PEL+ LYD +VFP KG RP TN  +GSDLDGD YF  WD  L+
Sbjct: 645 LEAVNIPELNFLYDVIVFPTKGSRPITNMIAGSDLDGDQYFACWDNELV 693


>gi|302682736|ref|XP_003031049.1| hypothetical protein SCHCODRAFT_57049 [Schizophyllum commune H4-8]
 gi|300104741|gb|EFI96146.1| hypothetical protein SCHCODRAFT_57049 [Schizophyllum commune H4-8]
          Length = 739

 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 127/448 (28%), Positives = 203/448 (45%), Gaps = 60/448 (13%)

Query: 417 VITPTKAYCLPPEVELSNRVLRKYK-DLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475
           +ITPT+     P  E SNRV+R +     D FLRV+F +E         L Y      R+
Sbjct: 297 IITPTRIILQGPYPERSNRVIRMFDVQHHDSFLRVSFTEE-------TKLQYRFD---RE 346

Query: 476 ITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE----DGKTS 531
           +   SF     V  RV SIL  G  + GR+F FLA+S S L++ + +F       D + +
Sbjct: 347 VDTASF-----VRSRVGSILKNGLVIAGREFEFLAYSQSALKEHTVYFVKPFRVGDTEVN 401

Query: 532 VLDIKKWMGRFTDKNIAKC----AARMGQCFSSTYATVEVPPTEV----DPELPDIKRNG 583
              +   +G F   +   C    AAR+ Q F++T A++ V P E     D   PD     
Sbjct: 402 AASVIASIGNFEKSSDRLCPARYAARLSQAFTATDASIVVNPAETHIISDISTPD---GM 458

Query: 584 YVFSDGIGKITPDLAMEV------AQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGI 637
           Y F+DG+G ++ ++A++        +K  ++    P A+QIR+ G KG+++       G 
Sbjct: 459 YHFTDGVGTMSREMAVDAYTEVNRYRKRAMNGRGIPAAFQIRFMGSKGMLSV-DHTLQGR 517

Query: 638 RMSLRESMNKFQ-SHHTTLEICS-WTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLS 695
            + LR+SM KF   ++  LEI   + R    +LNR +I LL  L VP E F   QD+ + 
Sbjct: 518 VVCLRDSMIKFDCPNNRNLEIARVFDRPAKYYLNRPLIMLLEGLGVPYETFLQHQDAAVQ 577

Query: 696 KL---NQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQT---EPHLRGMLTCIRAAQ 749
                 + L  +    E L    + +  +  + L    N +          ML       
Sbjct: 578 DAYSSTESLTKAARMLEALGLGTSFRLPSLLLNLVKLCNIENLGDNKFYSRMLEFAIHHV 637

Query: 750 LWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQ 809
           L  L+  ARI +P    L+G  D  G L+  + F          C   H     ++ ++ 
Sbjct: 638 LRELKNHARIPIPGAYTLVGVADVHGYLKEWEIFA---------CIKAH-----DSDEVI 683

Query: 810 VIKGFVVIAKNPCLHPGDIRILEAVDHP 837
            ++G ++I ++P +HPGD++I  A+  P
Sbjct: 684 YLEGDILIPRSPSIHPGDVQIARAIGRP 711


>gi|409046080|gb|EKM55560.1| hypothetical protein PHACADRAFT_173707 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 876

 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 127/482 (26%), Positives = 217/482 (45%), Gaps = 71/482 (14%)

Query: 417 VITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDI 476
           ++TP+      P +E  NRV+RKY      FLRV F DE      +           R++
Sbjct: 420 IVTPSTVRLEGPFLEQCNRVIRKYARNTSCFLRVRFADEARLQFRSE----------REV 469

Query: 477 TLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF--------FSEDG 528
              +F     +  R  ++L  G  + GR F FL ++ + L++ +AWF         + DG
Sbjct: 470 DCRAF-----IHNRFGNVLRRGLVIAGRHFHFLGYTQASLKEHTAWFVRSFKQPAVTSDG 524

Query: 529 K---------TSVLDIKKWMGRFTDKNIAKCAARMG----QCFSSTYATVEVPPTEVDPE 575
                     T +  +  + G   D  +  C AR G    QCFSST A+V +   +++  
Sbjct: 525 TSCEETVTADTIIAGLGVFDGILYDPELIMCPARYGARQAQCFSSTSASVTIDLDDIEVV 584

Query: 576 LPDIKRNG-YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCA-----YQIRYAGCKGVVAC 629
              +  +G   F+DG+G I+P+LA E+  +L      PP       +QIR  G KG+V+ 
Sbjct: 585 EDIVDADGERSFTDGVGTISPNLAAEIWTRLCAASGRPPSERGPRRFQIRIQGAKGMVSV 644

Query: 630 WPAKGDGIRMSLRESMNKFQSHHT-TLEIC-SWTRFQPGFLNRQIITLLSTLNVPD--EM 685
                 G ++ LR SM KF +  + TLEI  ++ +    +LNR ++ LL  L++    + 
Sbjct: 645 -DHLLQGRKLCLRPSMIKFYAADSRTLEIADAFVKPSKFYLNRPLVMLLEELDILGGYDF 703

Query: 686 FWSMQDSMLSK----LNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGM 741
              +Q+S++ K    +  +   +D+  +       +  N    +   G     +   + +
Sbjct: 704 LKFLQESVVEKTEAAVQSLYAAADLFDDFNLGRTYDLSNVFRELHHMGIATLDDTFSQQV 763

Query: 742 LTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSR 801
           L   R   L  L+ +ARI VP+G  L+G  D  G LE G+ F  V  P+ G         
Sbjct: 764 LCFGRHHVLRDLKYRARIPVPSGWNLVGVADIHGCLEEGEIFACVI-PYEG--------- 813

Query: 802 FAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP------ELHHLYDCLVFPQKGDRP 855
               ++   + G  +I+++P +H GD++++ A+  P      E+  L++ +VF  KG   
Sbjct: 814 ----QEPIYLHGPTLISRSPVIHRGDVQVVRAIGPPPPGSPFEIEPLHNSVVFSTKGSSA 869

Query: 856 HT 857
            T
Sbjct: 870 FT 871


>gi|308161550|gb|EFO63991.1| RNA-directed RNA polymerase, putative [Giardia lamblia P15]
          Length = 1999

 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 123/469 (26%), Positives = 207/469 (44%), Gaps = 100/469 (21%)

Query: 538 WMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDL 597
           W+G   +    K   R G CF  +  T++V    V   + D + N YVF+DG G+I+ DL
Sbjct: 429 WLGDINEVQACKICTRRGLCFGKSLPTIKVREEHVQ-VVADRQYNNYVFTDGAGEISYDL 487

Query: 598 AMEVA---QKLKLD---------------------------VNPP----------PCAYQ 617
            +E+A    KLK++                           + P           P A Q
Sbjct: 488 MLEIALCLNKLKVEQLNKNTETHYLDEFADTSEDTEQNMSHLQPNLKTISNLIQVPSAVQ 547

Query: 618 IRYAGCKGVV---ACWPAKGDGIRMS-LRESMNKFQSHHTTLEICSWTRFQPGFLNRQII 673
           +R+AG KGV+   A  P K   +  S ++ S+        T+EI    +   G +N QII
Sbjct: 548 MRWAGAKGVLILNALLPPKTILLHNSQIKFSIPNPTETQQTIEILRVAQPSKGMINMQII 607

Query: 674 TLLSTLNVPDEMFWSM--QD-----SMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIML 726
            LLS + VPD++F ++  QD       L  +++    +D+   V   + +  G     ML
Sbjct: 608 VLLSEMGVPDDVFLNLVYQDLQKALLFLEPIDRCRYQADLYQLVSRTSHSPSGKIILQML 667

Query: 727 SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQV 786
            AG +   EP L+ +L  ++  QL  ++   R  VP  R  +G  D   +L+ G+ +I +
Sbjct: 668 MAGVDI-IEPCLQFILMKLQLMQLRSMKANMRFSVPDSRIFVGIYDCFDLLKEGEVYIGL 726

Query: 787 SEPFLGNCFSKHG---SRFAETKK-------------------LQVIKGFVVIAKNPCLH 824
            EP   + ++      + F +T++                   +  ++G V++AKNPC +
Sbjct: 727 QEPLSISKWTATTHLKAIFNDTQRESLLPPDLNLHISDVVGLDISCVEGRVIVAKNPCFY 786

Query: 825 PGDIRILEAVDHPE-----------------------LHHLYDCLV-FPQKGD-RPHTNE 859
            GD+RI +AV+  E                       +  +Y  ++ FP+  + RP T+ 
Sbjct: 787 RGDVRIYQAVNIFERLKQETSRQKLKAVLPSFVTREAIRGMYRGVICFPKYYEGRPMTDC 846

Query: 860 ASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDI 908
            SGSDLDGD+Y+V+WD +L+   ++ + P  + A   +      D +DI
Sbjct: 847 LSGSDLDGDIYWVSWDASLLGTIQREYEPASFQARPGEIDICTPDLKDI 895


>gi|241168347|ref|XP_002410232.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
 gi|215494759|gb|EEC04400.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
          Length = 632

 Score =  134 bits (336), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 184/430 (42%), Gaps = 86/430 (20%)

Query: 752  GLREKARIFVP--AGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQ 809
            GLR + RI VP   GR ++G +DE   LE G+ F+Q +                      
Sbjct: 1    GLRTRTRIAVPPNKGRNMLGVVDETYSLEYGEVFVQYT---------------------- 38

Query: 810  VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDL 869
                           P D    +     E           ++G R      +GSDLDGD 
Sbjct: 39   ---------------PLDTTAGQGAQKKE-----------EEGSR-RAQILTGSDLDGDE 71

Query: 870  YFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHV 929
            Y V W+E+L  P     P +  +++   T    +    +I+F   ++ N+N+G + NAH+
Sbjct: 72   YIVIWEEDLFFPGCNKQPMVFSDSSSTATSNNSLG---MIQFVCNYIKNDNVGIMSNAHL 128

Query: 930  VHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQ-SYK 988
              AD    G   + C+ +A+  +T +DF KTG+  ++    KP  YPDFM K  ++ +Y+
Sbjct: 129  AWADKEGDGIFSKRCLKIAQKISTCLDFAKTGETASLDRDEKPLQYPDFMEKGGFKDTYR 188

Query: 989  SNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTD-----LEVPESVDFIADAWNQK 1043
            S  +LG LYR  +       S+ + V  N  D   D D      E P   D    A    
Sbjct: 189  SQHVLGHLYRLHR-------SLEAVVSTNFQDRAADGDGNHALFEYPGWRDHEESAQTAL 241

Query: 1044 CSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRK--QGELKERLKHSYSALRKEFR- 1100
              Y  ++  +L Q+ +  E E+V+G I S+  YN  K  +  ++  ++  Y  L K  R 
Sbjct: 242  AVYGSRMEQILRQHGIKTEGEVVSGIINSVSDYNKSKTDKASVEALVEKQYRDLVKSTRE 301

Query: 1101 QVFEKMDSDCELL---SEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLL 1157
            Q F  +D+ C+ L   +E  K  +  + ASAWY VTY   W       QE +        
Sbjct: 302  QFFRDVDAACQSLKVPTEAGKLTVLLQVASAWYMVTYAGVW-------QESN------CY 348

Query: 1158 SFAWIANDYL 1167
            SF W  +D L
Sbjct: 349  SFPWSVSDVL 358


>gi|397614211|gb|EJK62661.1| hypothetical protein THAOC_16717 [Thalassiosira oceanica]
          Length = 540

 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 176/386 (45%), Gaps = 80/386 (20%)

Query: 767  LMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPG 826
            LMG +DE G+LE  Q FIQVS         KH ++       +VI G V++AK+P +HPG
Sbjct: 12   LMGGIDETGLLEENQIFIQVS---------KH-TKENNKPAYEVITGRVMVAKHPVIHPG 61

Query: 827  DIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW 886
            D+R+LEAVD PEL  + + ++F Q G RP TN  SGSDLDGD + + WD  L  P  K+ 
Sbjct: 62   DLRMLEAVDLPELRGVKNVVLFSQHGHRPVTNMMSGSDLDGDEFAICWDRRLFLP--KTV 119

Query: 887  PPMEYNAA---EAKTLTRPVDQRD--------IIEFFAKHMVNENLGTICNAHVVHADHS 935
              M Y++    E   L   V + +        ++  F  H  N+NLG I    + HA   
Sbjct: 120  EAMSYDSHSPDETGLLPLSVLEEEFGVTTNEALVRHFINHAKNDNLGKISMLWLDHAIDK 179

Query: 936  EYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKL-----YPDFMGKE---AYQSY 987
               +  E C+ LA L + +VDFPK+    ++PA L  +L     +P    +E      S+
Sbjct: 180  GSASCSE-CLELAALHSISVDFPKS----SIPAKLPDRLVLGSTFPRAHWREKAGGSPSF 234

Query: 988  KSNKILGRLY-----------RQSKDAY------DEDISVSSEVDINPVDIHYDTDLEVP 1030
                I+GRLY            Q + ++      D+D       D N   I    + ++ 
Sbjct: 235  HCRSIVGRLYDNVLHELKVMSDQDESSFNWGGGSDKDAMAGRYRDRNGQIIMQGNEEKIL 294

Query: 1031 ESVDFIAD-------AWN--------------------QKCSYDGQLNGLLEQYKVNREE 1063
             +   + D        W+                    Q+  ++ +L  L+ QY +  E 
Sbjct: 295  RAKKSLFDPSLVHRLGWSMDGKSQDYDLHRCLLDFALEQRNDFEDELVELMNQYHIKSEG 354

Query: 1064 ELVTGHIWSMPKYNSRKQGELKERLK 1089
            E+VTG +    K + RK+ +  E++K
Sbjct: 355  EVVTGCVLEYHKLHQRKRYDASEQVK 380


>gi|397621217|gb|EJK66181.1| hypothetical protein THAOC_12913, partial [Thalassiosira oceanica]
          Length = 906

 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/383 (30%), Positives = 180/383 (46%), Gaps = 60/383 (15%)

Query: 405 KQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLR----KYKDLADRFLRVTFMDEGLQTM 460
           K  D  V + R++++P +      + E+SNR +R    ++K     F+R+T  DE    +
Sbjct: 555 KDDDFCVSLPRVLLSPLRLSITAFQSEMSNRFVRLFINRHKFSESAFVRLTIGDENGDKL 614

Query: 461 NANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCS 520
               LS                   +V +R+R ++  G  L G+ + FLA+SSSQL++ S
Sbjct: 615 FGGELS------------------RQVEERIRQLILQGVRLGGKTYHFLAYSSSQLKEQS 656

Query: 521 AWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPP------TEVD 573
            W    +   SV  ++  MG F+  ++ +K AAR+GQCFS+T  TV            V 
Sbjct: 657 MWLVCAERGWSVDSMRDLMGDFSMCESPSKYAARVGQCFSTT-VTVSTRSHRRNDGLRVK 715

Query: 574 PELPDIKRN--GYVFSDGIGKITPDLAME-------VAQKLKLDVNPPPCAYQIRYAGCK 624
            +LPDI  +    V SDG G I  ++ ++        A + K D++    A Q R  G K
Sbjct: 716 DDLPDIPSSIESLVHSDGCGLIRHEVLLKSVLPLVPYAPRFKSDIS----AIQFRCGGAK 771

Query: 625 GVVACWPAKGDGIR---MSLRESMNKFQSHHTTLEICS---WTRFQPGFLNRQIITLLST 678
           GV+  W     GI+   + LR S          + IC        Q G   RQ+I L + 
Sbjct: 772 GVLVGWDFNTLGIQNYDVCLRPSQG--------VSICMRGIGGTHQLGIDWRQVILLGTH 823

Query: 679 LNVPDEMFWSMQDSMLSKLNQMLVDSDVAFE---VLTAACAEQGNTAAIMLSAGFNPQTE 735
           L +  E+F S+QD M+S LN+MLVD+  A +    +    AE   +   ML++G  P  +
Sbjct: 824 LGISGEVFLSLQDEMMSSLNRMLVDARFAAQYVPFIGGIDAEIVTSLCDMLASGLKPSRD 883

Query: 736 PHLRGMLTCIRAAQLWGLREKAR 758
           P L   L   R+  L GLR+KAR
Sbjct: 884 PFLYSCLHATRSHHLMGLRKKAR 906


>gi|238479184|ref|NP_001154496.1| uncharacterized protein [Arabidopsis thaliana]
 gi|61742572|gb|AAX55107.1| hypothetical protein At2g05370 [Arabidopsis thaliana]
 gi|330250828|gb|AEC05922.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 143

 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/151 (49%), Positives = 97/151 (64%), Gaps = 12/151 (7%)

Query: 1   MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGG-VWRCRLKTSCTPSESYPDFY 59
           ME EG  K LV +QV+  GF  + K  EL  YLEN+VG  VWRCRLKTS TP  SYP+F 
Sbjct: 1   MESEGNMKNLVVSQVTISGFGESTKTKELTDYLENKVGLLVWRCRLKTSWTPHGSYPNFE 60

Query: 60  VTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFR 119
           + +T+ + K D YE+V PHAFVH      +   +DAA +++L L G+ LK SL  ENP+ 
Sbjct: 61  IIDTSNIPKFDCYERVVPHAFVHCDAHKSL---MDAAEQSKLILGGQPLKFSLSSENPYT 117

Query: 120 LNQRGRTSTPFKLPDVCVEIGTLVSRDEFFV 150
           LN       P+KL  V +EIGT VS+D+FF+
Sbjct: 118 LN-------PYKLTGVSLEIGT-VSQDDFFL 140


>gi|290993091|ref|XP_002679167.1| RNA dependent RNA polymerase [Naegleria gruberi]
 gi|284092782|gb|EFC46423.1| RNA dependent RNA polymerase [Naegleria gruberi]
          Length = 1235

 Score =  130 bits (326), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 148/543 (27%), Positives = 228/543 (41%), Gaps = 122/543 (22%)

Query: 530  TSVLDIKKWM-------GRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPE---LPDI 579
            ++V  IK+W          +  KNI K   R+     + Y T  V PTE+      +PDI
Sbjct: 291  STVEQIKEWAIPKELNPTLYDSKNILKQRIRL-----ALYNT-PVIPTEIIQYFTVIPDI 344

Query: 580  KRNGYVFSDGIGKITPDLAMEVAQK----------------------------LKLDVNP 611
            +R+G+ F+DG G I+PD+A +V +                             L  D + 
Sbjct: 345  ERDGFNFTDGCGFISPDMAKKVYKHILNAENRVLIKTDQEEDEIGYDEQRGFDLFSDSSY 404

Query: 612  PPCAYQIRYAGCKGVVACWPAKGDGIRMS--LRESMNKFQSHH------TTLEI------ 657
             P A+QIR+ G KG++       +  R+   LRESM K +++       +TL+I      
Sbjct: 405  IPSAFQIRFRGAKGMLVVNTETFEKYRVHIVLRESMVKCKTNEKVDQSFSTLQIVGHSSP 464

Query: 658  CSWTRFQPGFLNRQIITLLSTLNVPDEM---FWSMQDSMLSKLNQMLVDSDVAFEVLTAA 714
            C  TR     +N  I+ LLS  +   E+      M  + +       V  D   EV+   
Sbjct: 465  CELTR-----VNSTIMHLLSGCDSNGEVRKRVLEMASAHVQNSLDKYVHEDT--EVIARQ 517

Query: 715  CAEQGNTAAIML-----SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMG 769
              +  N  ++ +     + GF     P+ + ++T ++            I     R L G
Sbjct: 518  YMKDNNLISLNVLSTTKNKGFAFLAGPY-KSLITSLK------------IPFSNSRRLYG 564

Query: 770  CLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIR 829
             +D   VL  G+ F+Q+S              F      QV++  +V+ K PCLH GD+R
Sbjct: 565  VVDPYEVLNEGEVFVQISS-------------FKNPSHKQVLQKEIVLTKEPCLHRGDLR 611

Query: 830  ILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPM 889
             ++AV +P+L HL D +VF  KG RP  N  SGSDLDGD +FV WD+ LI  + K + P 
Sbjct: 612  KIKAVYYPKLSHLCDVIVFSSKGKRPVPNMISGSDLDGDQFFVCWDD-LIVDNVKIFEPG 670

Query: 890  EYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDEN----CI 945
             ++    +   RP         F   +  + +G + +A+V H  H      DEN      
Sbjct: 671  LFDEEIKQEDIRP---------FEPDVFKDWVG-VRHAYVDH--HGSNWTNDENWNKEMR 718

Query: 946  LLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSY------KSNKILGRLYRQ 999
             L E+   AV  PK G I         +   +F G   Y         KS+ +   +Y+Q
Sbjct: 719  RLCEIVNHAVGSPKNGVISVATREEDLRFIDNFPGYPHYHQSKRGALKKSSSLASEVYQQ 778

Query: 1000 SKD 1002
              D
Sbjct: 779  MVD 781


>gi|27413485|gb|AAO11660.1| hypothetical protein [Arabidopsis thaliana]
          Length = 143

 Score =  130 bits (326), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/151 (49%), Positives = 96/151 (63%), Gaps = 12/151 (7%)

Query: 1   MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGG-VWRCRLKTSCTPSESYPDFY 59
           ME EG  K LV +QV+  GF  + K  EL  YLEN+VG  VWRCRLKTS TP  SYP+F 
Sbjct: 1   MESEGNMKNLVVSQVTISGFGESTKTKELTDYLENKVGLLVWRCRLKTSWTPHGSYPNFE 60

Query: 60  VTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFR 119
           + +T+ + K D YE+V PHAFVH      +   +DAA + +L L G+ LK SL  ENP+ 
Sbjct: 61  IIDTSNIPKFDCYERVVPHAFVHCDAHKSL---MDAAEQXKLILGGQPLKFSLSSENPYT 117

Query: 120 LNQRGRTSTPFKLPDVCVEIGTLVSRDEFFV 150
           LN       P+KL  V +EIGT VS+D+FF+
Sbjct: 118 LN-------PYKLTGVSLEIGT-VSQDDFFL 140


>gi|45861741|gb|AAS78669.1| RdRp1m truncated protein [Nicotiana benthamiana]
          Length = 479

 Score =  129 bits (325), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 169/335 (50%), Gaps = 45/335 (13%)

Query: 218 ILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSR 277
           +LLQL  +PR++ R  +        F     DD W+RTTDFTPS  IG  +S  +   + 
Sbjct: 166 LLLQLFGAPRIYKRLEES----CYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLEFHNG 220

Query: 278 HR-GKLSKVITYLGERRVQVD-------SLSRPITIREEPDFEVPMSDPFFCIHYEEGIS 329
            R     +   Y  E   QV        S S+ + +       VP+      +H   G+ 
Sbjct: 221 IRLPNFRESFFYYKESGNQVILRTGFTFSFSQKLAL-------VPI------VHLPNGVD 267

Query: 330 --FEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKH----IYSYKWPVFDA 383
             ++I+F +++++  G      L+ +FF L+  + R  N+A ++H    +Y  K   +D 
Sbjct: 268 LPYKILFKISSLIQHGCFPGVALNFNFFQLVDPRRR--NIACIEHALEKLYYLKECCYDP 325

Query: 384 CKRLKLVQEWLLKDPELYKGPK-QIDD-IVEVRRLVITPTKAYCLPPEVELSNRVLRKYK 441
            + L    +  LK  +L K P   +DD +V VRR+V+TP K Y   PEV +SNRVLR Y 
Sbjct: 326 VRWLTEQYDEYLKRRQLPKSPSITLDDGLVYVRRVVVTPCKVYFSGPEVNVSNRVLRNYS 385

Query: 442 DLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYL 501
           +  D FLRV+F+DE  + +++  L      + R  T N    +T ++ R+ S L  GF +
Sbjct: 386 EDIDNFLRVSFVDEEWEKIHSTDL------LPRASTGN--GMRTDIYLRILSTLRNGFVI 437

Query: 502 CGRKFSFLAFSSSQLRDCSAWFF-SEDGKTSVLDI 535
             +KF FLAFSSSQLRD S W F S  G T+  DI
Sbjct: 438 GDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDDI 472


>gi|241083169|ref|XP_002409050.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
 gi|215492623|gb|EEC02264.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
          Length = 167

 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 100/167 (59%), Gaps = 4/167 (2%)

Query: 763 AGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPC 822
            GR ++G LDE   LE G+ F+Q +E  L +   +   +   TK   ++ G V++ K PC
Sbjct: 5   TGRNMLGVLDETQSLEYGEVFVQFTEHQLDDGSCEDDPKVPTTK---ILVGAVLVTKCPC 61

Query: 823 LHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPS 882
           LHPGD+R   AVD P LHH+ DC+VFP KG RPH NE +GSDLDGD Y V W+++L+ P 
Sbjct: 62  LHPGDVRKFAAVDIPGLHHVKDCIVFPAKGPRPHPNEMAGSDLDGDEYIVIWEKDLLFPG 121

Query: 883 KKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHV 929
             + P M +    +   +    +  +++F   ++ N+N+G + NAH+
Sbjct: 122 -NNQPAMVFCDHSSVVPSDDSLEDGMVKFICNYIKNDNVGILSNAHL 167


>gi|402580635|gb|EJW74584.1| hypothetical protein WUBG_14509 [Wuchereria bancrofti]
          Length = 168

 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 11/169 (6%)

Query: 767 LMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPG 826
           + G +DE G L+ GQ F+Q +     N + K  S+ A      ++KG V++ KNPC+  G
Sbjct: 1   MFGVMDETGQLQWGQIFVQCTR----NIWLKTPSQSAAKI---ILKGKVMLTKNPCIVAG 53

Query: 827 DIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW 886
           D+R+ EAVD PELHHL D +VFPQ G RPH +E +GSDLDGD Y V WD+ LI   + + 
Sbjct: 54  DVRVFEAVDIPELHHLVDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQKLI--FEHNE 111

Query: 887 PPMEYNAAEA--KTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHAD 933
           PP+++  + +  K +       ++ +FF  ++  +++G+I NA +V+AD
Sbjct: 112 PPLDFTKSTSGNKIIDEAQVDLEMRKFFVNYIKQDSIGSISNAFLVNAD 160


>gi|241636823|ref|XP_002410661.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
 gi|215503493|gb|EEC12987.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
          Length = 385

 Score =  127 bits (319), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 165/342 (48%), Gaps = 18/342 (5%)

Query: 862  GSDLDGDLYFVTWDENLI-PPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNEN 920
            GSDLDGD Y V W+ +L  P S K+  PM ++ + +        +  +I+F   +++N+N
Sbjct: 12   GSDLDGDEYIVIWEPDLFFPGSNKT--PMTFSDSSSVGSADENLEEGMIKFICNYIINDN 69

Query: 921  LGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMG 980
            +G + NAH+  +D  E G     C+ +A+  +T VDF KTG    +  H KP LYPDFM 
Sbjct: 70   VGIMSNAHLAWSDQLEDGIFSPLCLGVAKKISTCVDFAKTGLASCLDRHEKPLLYPDFME 129

Query: 981  KEAYQ-SYKSNKILGRLYR--QSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIA 1037
            K   + +Y+S ++LG LYR  +S  A      ++    +   D H  T  E P   D   
Sbjct: 130  KGGSKDTYRSKRVLGHLYRLHRSLQAVINTDFMARTGQLAEGDGHC-TLFEYPGWKDHQE 188

Query: 1038 DAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYN--SRKQGELKERLKHSYSAL 1095
             A     +Y  Q++ +L QY V  E E+V+G I ++  YN  +  +  +K  +   Y++L
Sbjct: 189  VAEKALAAYTVQMSRILHQYGVGSEGEVVSGIIVNVSDYNKSNEDKNSVKALVAKQYASL 248

Query: 1096 RKEFRQV-FEKMDSDCE---LLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSA 1151
             K  R   F  + + C      ++  K  +  + ASAWY VTY   W +++         
Sbjct: 249  MKLTRDTFFSDVTAACNSNGASTDIAKKTILLQMASAWYMVTYAGVWHEQNCQSFPWPGF 308

Query: 1152 RSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYV 1193
            RS+V  +      + +AR+      +  +   K VN   RY+
Sbjct: 309  RSMVEQN-----EEVVARLFKDWSGVLEVSIRKQVNVSGRYL 345


>gi|268565349|ref|XP_002639417.1| Hypothetical protein CBG04006 [Caenorhabditis briggsae]
          Length = 797

 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 127/431 (29%), Positives = 190/431 (44%), Gaps = 75/431 (17%)

Query: 816  VIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 875
            ++ K P +  GDIR+ EAVD PELHHL D +VFPQ G R   +E +GSDLDGD Y V WD
Sbjct: 1    MVTKFPTMCAGDIRMYEAVDIPELHHLTDVIVFPQSGPRSQPDEMAGSDLDGDEYAVIWD 60

Query: 876  ENLIPPSKKSWPPMEY-NAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADH 934
              L    +K+ P   Y +  + K  T       + +FFA  M  E++G     H+  +D 
Sbjct: 61   PILF--FQKNAPAFGYCSEKKNKQFTLGEMDHKMNDFFALSMRQEDVGVTAINHLHQSD- 117

Query: 935  SEYGALDENCILLAELAATAVDFPKTGK---IVTMPAHLKPKL-----------YPDFMG 980
             ++G   +    L E  A A+DF K+G     +T    + P+             PDF  
Sbjct: 118  -QFGIDSDVANSLVEKNAMALDFAKSGDPPLPLTNEGRINPETGLWEPPERSERRPDFSQ 176

Query: 981  KE--AYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIAD 1038
                   SY S+++LG L+R+ +     D+ +SS     PV I    DL + E  +   D
Sbjct: 177  SRHAGSASYASSRLLGTLHRELRSI--NDVVMSSSEKQVPVVID---DLLIWEGWEKHKD 231

Query: 1039 -AWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGE----------LKER 1087
             A  Q   Y+GQL  ++E + V  E E+ +G    +    S ++ +          ++ +
Sbjct: 232  NATLQMIRYNGQLRSIMETFGVATEAEVFSGCFRDIRNRQSEREQDDMSMYNTESVIEGQ 291

Query: 1088 LKHSYSALRKEFRQVF----EKMDSDCELLSEDEKNALFER-----------------KA 1126
            +   Y   RKEF + F     +M +   L   +     +E                  KA
Sbjct: 292  MTDLYKKYRKEFFEEFVTPEARMPAYMRLTEPENVRRNYEEVDVLRRVCKQPSDAMMAKA 351

Query: 1127 SAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIR-CREMANIDTSKP 1185
             A+Y+V Y  E   K  D +          LSFAWIA D L  ++ +   EM N+    P
Sbjct: 352  IAYYRVCY--ENAMKGSDRK----------LSFAWIAYDILNFVRGKNIMEMENV----P 395

Query: 1186 VNYLARYVADR 1196
            V  L ++ A R
Sbjct: 396  VRRLPQFQAIR 406


>gi|134077480|emb|CAK40045.1| unnamed protein product [Aspergillus niger]
          Length = 377

 Score =  121 bits (303), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 109/205 (53%), Gaps = 18/205 (8%)

Query: 814  FVVIAKNPCLHPGDIRILEAVDHPELH---HLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
             V++ ++P LH GDI+  + V  P+ H    L + +VF  KG R   ++ SG DLDGD++
Sbjct: 1    MVLVTRSPALHDGDIQFAQNVIPPDNHPLAELTNSIVFSSKGYRDLPSQLSGGDLDGDIF 60

Query: 871  FVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVV 930
             V WD +  P   +++ P +Y       + RPV++ D+ +FF   M  ++LG I   H++
Sbjct: 61   NVIWDTDAYP--VRTFAPADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGVIATRHMI 118

Query: 931  HADHSEYGALDENCILLAELAATAVDFPKTGKIVTMP-----AHLKPKLYPDFMGKEAYQ 985
             AD    G     C  LA+L +TAVDF KTG  V M         +P LYP       ++
Sbjct: 119  MADQEAEGTSHPVCRKLAQLHSTAVDFSKTGIPVQMSEIPKGKPFRPDLYP------FHK 172

Query: 986  SYKSNKILGRLYR--QSKDAYDEDI 1008
             Y+S KILG+LYR    +  + EDI
Sbjct: 173  YYRSEKILGKLYRGVDERQIWQEDI 197


>gi|322695803|gb|EFY87605.1| Rnai Polymerase [Metarhizium acridum CQMa 102]
          Length = 685

 Score =  120 bits (301), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 191/435 (43%), Gaps = 72/435 (16%)

Query: 586 FSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKG--VVACWPAKGDGIRMSLRE 643
            +DGIG+I+  LAM++A KL L     PCA+Q R  G KG  ++   P  GDG  +    
Sbjct: 1   MNDGIGRISKALAMKIASKLGL--TELPCAFQARLGGAKGMWIIDSDPILGDGDWIVTYA 58

Query: 644 SMNKFQ-----SHHTTLEICSWTRF-QPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKL 697
           S  K+      SHH T E+  W++  +P  LN+Q I +L    +     + M+D++ + L
Sbjct: 59  SQIKWDCDHEDSHHRTFEVKEWSKEPRPASLNQQFIPVLEARAINP---YKMRDTISAHL 115

Query: 698 NQMLVDSDVAFEVLTAACAE------QGNTA-----------------------AIMLSA 728
            + L++   A        AE      QG  +                       A++L +
Sbjct: 116 RRGLLEELAAQRTAMEDSAELRLWLQQGGGSKPEGLDNSMAFLGCLPRDPKKVMAVLLDS 175

Query: 729 GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSE 788
           GF+P++  +L+ +       +   L+ K +I VP   +L+  +D    LE  +  +  S 
Sbjct: 176 GFHPKSCKYLQDLFRDAARDRAAFLKAKMKICVPCSAYLLMVVDFSSTLEEDEVHVSFST 235

Query: 789 PFLGNCFSKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLV 847
            F  + F              +++G  V++A+ P   P DI+ ++ V  P+L HL D +V
Sbjct: 236 KFQVDGFCD-----------TLLEGMDVLVARAPSHLPSDIQRVKVVSRPQLRHLKDVIV 284

Query: 848 FPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEA----KTLTRPV 903
           F  KG     ++ SG D DGD  +V WD+ ++     +  P +    E     + L R +
Sbjct: 285 FSTKGRSSLADKLSGGDYDGDRAWVCWDQEIVENFCNAAMPGDDTDPEKLGHLRKLNRSM 344

Query: 904 ---------DQRDIIEF----FAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAEL 950
                    D+R   +F    FA +M    LG   +    ++ H++     +N ++L+ L
Sbjct: 345 AQIRQEETGDERVCAKFLRESFAFNMQPFLLGKCTDYKERYSYHTK-SVSSKNILILSRL 403

Query: 951 AATAVDFPKTGKIVT 965
               VD PK G I T
Sbjct: 404 LGCLVDQPKQGYIFT 418


>gi|15224523|ref|NP_178605.1| uncharacterized protein [Arabidopsis thaliana]
 gi|4914363|gb|AAD32900.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250827|gb|AEC05921.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 211

 Score =  119 bits (298), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 87/138 (63%), Gaps = 11/138 (7%)

Query: 8   KLLVDAQVSFGGFDRNVKAAELVKYLENEVGG-VWRCRLKTSCTPSESYPDFYVTNTAEV 66
           K LV +QV+  GF  + K  EL  YLEN+VG  VWRCRLKTS TP  SYP+F + +T+ +
Sbjct: 2   KNLVVSQVTISGFGESTKTKELTDYLENKVGLLVWRCRLKTSWTPHGSYPNFEIIDTSNI 61

Query: 67  RKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGRT 126
            K D YE+V PHAFVH      +   +DAA +++L L G+ LK SL  ENP+ LN     
Sbjct: 62  PKFDCYERVVPHAFVHCDAHKSL---MDAAEQSKLILGGQPLKFSLSSENPYTLN----- 113

Query: 127 STPFKLPDVCVEIGTLVS 144
             P+KL  V +EIGTL S
Sbjct: 114 --PYKLTGVSLEIGTLAS 129



 Score =  100 bits (248), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 55/76 (72%)

Query: 222 LASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGK 281
           LASSPRVWYRTADDDI      D+LDD+DPWIRTTDFT SGAI RC  YR+ IS R   K
Sbjct: 127 LASSPRVWYRTADDDIYETSAVDLLDDNDPWIRTTDFTQSGAIRRCLGYRVFISPRDHNK 186

Query: 282 LSKVITYLGERRVQVD 297
            +KV+ YL  +RV  +
Sbjct: 187 WTKVLDYLKTQRVNTE 202


>gi|405974294|gb|EKC38950.1| Putative RNA-dependent RNA polymerase 1 [Crassostrea gigas]
          Length = 299

 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 135/257 (52%), Gaps = 24/257 (9%)

Query: 409 DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYF 468
           +   VR  V+TP++   LP +     R+LR Y +  D F+ + + D+    +   +  Y 
Sbjct: 23  NYTSVRMAVLTPSRFILLPNKPVHLTRILRLYNN--DYFILLDYRDDDFDKV-CGIHPYG 79

Query: 469 IAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE-D 527
              IV+D+               +     GF +  R + FL  S+S+LR+ S WFFS  D
Sbjct: 80  SMKIVQDM---------------KRFFINGFEIHDRHYDFLGCSNSELRNHSFWFFSSYD 124

Query: 528 GKTSVLDIKKWMGRFT-DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVF 586
           G T+   I++  G  + ++ +A   +++G CFS + +T+ +   +      D++RNG  F
Sbjct: 125 GITAEF-IRQNCGDLSMERCVASYVSKIGLCFSPSLSTLTMEEHQEVRFEEDVRRNGLCF 183

Query: 587 SDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR-MSLRESM 645
           +DGIGKI+  LA +VA+K+ L  N  P  +QI Y GCKG++A  P+ G+    + +R SM
Sbjct: 184 TDGIGKISRRLAAKVAKKMNL--NTVPSVFQICYGGCKGMIALDPSLGENREILVIRHSM 241

Query: 646 NKFQSHHTTLEICSWTR 662
            KF+S   +LE+   +R
Sbjct: 242 KKFESSSKSLEVLQVSR 258


>gi|443920944|gb|ELU40764.1| calcium:hydrogen antiporter [Rhizoctonia solani AG-1 IA]
          Length = 862

 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 154/304 (50%), Gaps = 42/304 (13%)

Query: 418 ITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDIT 477
           ITPT  +      E SNRV+R+Y      F+RV F DE      A+  + F      ++ 
Sbjct: 524 ITPTAVHL----NEQSNRVIRRYPGYETHFIRVAFTDE------ADGRARF----EYEVD 569

Query: 478 LNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE-DGKTSVLD-- 534
             +F+QK     RV   L     LC R++  L +S S  R+ + +F +  + K  +++  
Sbjct: 570 TMAFTQK-----RVGKFLKNAIRLCDREYELLGYSQSGFRENACFFVAPFEWKDEIINGE 624

Query: 535 -IKKWMGRFTDKNI---AKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGI 590
            I+  +G F DK I   A+  ARM Q FSST  +  +  +E+   +    R   +FSDG 
Sbjct: 625 YIRYSLGNF-DKVIDCPARYGARMSQAFSSTSQSTMLQESEIRHIMELKNRRDEMFSDGC 683

Query: 591 GKITPDLAMEVAQKLKLDVNP-----------PPCAYQIRYAGCKGVVACWPAKGDGIRM 639
           G I+ +LA +V + +   + P           PP A+QIR  G KG+V   P K +G  +
Sbjct: 684 GTISRELAKDVWKSMLQHLPPSRQGFHHENELPPPAFQIRIGGSKGMVRLDP-KLEGRVL 742

Query: 640 SLRESMNKFQSHH-TTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWS-MQDSMLSK 696
            LR SM KF++ H  +LEI  ++  + P FLNR ++ LL +  V D++F + M+D++   
Sbjct: 743 CLRPSMTKFEAEHDLSLEIARAFVTYSPCFLNRPLVVLLWSGGVEDDVFLNLMKDNLAET 802

Query: 697 LNQM 700
           ++ M
Sbjct: 803 MSGM 806


>gi|317031168|ref|XP_001392956.2| hypothetical protein ANI_1_2224074 [Aspergillus niger CBS 513.88]
          Length = 1206

 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 114/232 (49%), Gaps = 38/232 (16%)

Query: 813  GFVVIAKNPCLHPGDIRILEAVDHPELH---HLYDCLVFPQKGDRPHTNEASGSDLDGDL 869
            G V++ ++P LH GDI+  + V  P+ H    L + +VF  KG R   ++ SG DLDGD+
Sbjct: 797  GMVLVTRSPALHDGDIQFAQNVIPPDNHPLAELTNSIVFSSKGYRDLPSQLSGGDLDGDI 856

Query: 870  YFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHV 929
            + V WD +  P   +++ P +Y       + RPV++ D+ +FF   M  ++LG I   H+
Sbjct: 857  FNVIWDTDAYP--VRTFAPADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGVIATRHM 914

Query: 930  VHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY-PDFMG-------- 980
            + AD    G     C  LA+L +TAVDF KTG  V M    K K + PDFM         
Sbjct: 915  IMADQEAEGTSHPVCRKLAQLHSTAVDFSKTGIPVQMSEIPKGKPFRPDFMALGPVARIH 974

Query: 981  ------------KEAY----------QSYKSNKILGRLYR--QSKDAYDEDI 1008
                        + AY          + Y+S KILG+LYR    +  + EDI
Sbjct: 975  NKSDIELEEYVIQAAYDEDDDMEPFHKYYRSEKILGKLYRGVDERQIWQEDI 1026


>gi|391343492|ref|XP_003746043.1| PREDICTED: uncharacterized protein LOC100902078 [Metaseiulus
            occidentalis]
          Length = 1371

 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 176/756 (23%), Positives = 316/756 (41%), Gaps = 103/756 (13%)

Query: 409  DIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYF 468
            D+  V+R ++ P+K    PP V   + +LR      ++ + V   D+     +   L + 
Sbjct: 394  DLYLVKRAIVCPSKTIVKPPTVVRVSALLRSVD--PEKVMLVDVRDD-----DGTRLRFN 446

Query: 469  IAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS-ED 527
                 R     S ++K    KR       G  + G+ + FL  S SQ  D S W ++ E 
Sbjct: 447  TQNEARTFIQVSIAEK---IKR-------GIKIAGKTYYFLGNSKSQAEDFSFWAYAIEK 496

Query: 528  GKT-SVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVF 586
            G T ++  +++ +G     N+A+  A     F+     V + P+ V  E  D+      F
Sbjct: 497  GDTDTISSVRERLG--ITGNLARRIAVQDLVFAEALGAVSIDPSWVSEESEDVP-AASDF 553

Query: 587  SDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMN 646
              GIG+I+      V +           A ++ + G +G +   P+  +G R+  R+S  
Sbjct: 554  KHGIGRISEAALRTVVENCHWS-RTLCSAIRVIHGGRRGTLVYDPSL-EGSRIIYRKSQT 611

Query: 647  KFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVD--- 703
              +S  +TL +   +  +    +R +I+ LS+        +S++D  L+ L ++L +   
Sbjct: 612  VIRSEDSTLYLIGRSEMKNAAFDRTLISTLSSKADGLTEEFSVED-FLTPLYELLTEPLS 670

Query: 704  --------SDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLRE 755
                      VA E +      +G         G++ + +   R  + C     L  L+ 
Sbjct: 671  LYSTGARVKRVAAEPVLDHIFRKGEDLY-----GYDKRGDGLFRQAVRCKALKALRDLK- 724

Query: 756  KARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFV 815
            K +  +     +M  +DELG+LE G+ FIQVS P                  L+V+ G +
Sbjct: 725  KLKQHMTNAYEIMPVVDELGLLEEGEVFIQVSSP---------------GGDLRVLSGDL 769

Query: 816  VIAKNPCLHPGDIRILEAVDHPE----LHHLYDCLVFPQK-GDRPHTNEASGSDLDG--D 868
            V+A+   +H  + R + AV+ P+    L HL++C+V P K G RP    A  +   G  D
Sbjct: 770  VLARKDAMHLEEFRRVTAVNRPDVVGALGHLFNCVVLPSKGGSRPLEFLAREASYAGESD 829

Query: 869  LYFVTW--DENLIPPSKKSWPPMEYNAAEAKTLTRPVD-QRDIIEFFAKHMVNENLGTIC 925
            +  +    DE      K++ PP   + A    +    D +     + A    N+     C
Sbjct: 830  IILIASHPDEEPAFLFKRNDPPRSTSIAVGSEVDASCDTETHYFNYLAYVSFNDFEEVFC 889

Query: 926  NAHVVHADHSEYGALDENCILLAELAATAVDFPKTGK-IVTMPAHLKPKLYPDFMGKEA- 983
                  AD     A  E+CI +         + + G+ +  +P  +    +P F+ K + 
Sbjct: 890  ----ALADSLPQHASSESCIRVGVQRRLLDKYRRGGREVAPLPKVVN---FPHFLEKISD 942

Query: 984  YQSYKSNKILGRLYRQSK---DAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAW 1040
             ++Y S + LG +YR+ +     Y ED  + +E      D+ +  +L V  S  F   A 
Sbjct: 943  RRTYCSARPLGHIYRKGRLIDTEYFEDTQMMTE------DLTFQHELRVEGSEAFAEIAA 996

Query: 1041 NQKCSYDGQLNGLLEQYKVNREEELVTGHIWS---MPKYNSRK---QGELKERLKHSYSA 1094
                 + G L G+   Y ++  +E++TG I+S       N R+   +  +K ++KH    
Sbjct: 997  RDIRQFRGDLEGIASLYGIS-VDEVLTGTIFSDRGQHSSNERRSDIEAAVKLQVKHLALI 1055

Query: 1095 LRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWY 1130
             R++F++  EK  S+ E+L          +K SA+Y
Sbjct: 1056 CRRKFKKGMEKA-SELEVL----------QKISAYY 1080


>gi|67537240|ref|XP_662394.1| hypothetical protein AN4790.2 [Aspergillus nidulans FGSC A4]
 gi|40741170|gb|EAA60360.1| hypothetical protein AN4790.2 [Aspergillus nidulans FGSC A4]
          Length = 854

 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 148/348 (42%), Gaps = 79/348 (22%)

Query: 431 ELSNRVLRKYKDLADRFLRVTFMD-EGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFK 489
           ++SN V+R+Y +LAD FLRV F D + +  ++A V          D T++       V  
Sbjct: 232 DISNCVIRRYANLADNFLRVRFTDAKHIGRIHATV----------DNTMDE------VLT 275

Query: 490 RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAK 549
           R++  L+ G  +   ++ FLAF +S                                   
Sbjct: 276 RIKRALANGITIGSTRYEFLAFGNS----------------------------------- 300

Query: 550 CAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV 609
                  CFS+T A      T    ++ DI+ NGY+FSDG+G+I+  LA  V  +LK+  
Sbjct: 301 -----SSCFSTTRAISGC--TAHVKKIDDIEGNGYIFSDGVGRISKFLAQIVKSELKIKT 353

Query: 610 --NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGF 667
               PP AYQ R  GCKG++  +P +     + +R+S  KF +    LEI  W++F    
Sbjct: 354 PTKEPPSAYQFRLVGCKGMLIVFP-QARPQEVHIRKSQFKFAALSQGLEIIRWSQFTVAS 412

Query: 668 LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLS 727
           LNRQ+I +LSTL + D++F     +ML  L++ +     A  +L         T  I L 
Sbjct: 413 LNRQLILVLSTLGITDKVFHLKLKTMLRNLDEAMESDPKAAHLLRKYVDPNQVTLTIYLP 472

Query: 728 A--------------GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761
                            NP   P   G +  +RA    GL     I V
Sbjct: 473 KNGEKYEIIEGICILARNPSLHP---GGIRVVRAVNAPGLHHLKDIVV 517



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 55/75 (73%)

Query: 806 KKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDL 865
           +K ++I+G  ++A+NP LHPG IR++ AV+ P LHHL D +V P+ GDR   +  SGSDL
Sbjct: 476 EKYEIIEGICILARNPSLHPGGIRVVRAVNAPGLHHLKDIVVLPRTGDRDIASMCSGSDL 535

Query: 866 DGDLYFVTWDENLIP 880
           DGD + V WD++L+P
Sbjct: 536 DGDDFLVIWDQDLLP 550


>gi|259482364|tpe|CBF76776.1| TPA: RNA-directed RNA polymerase (Sad-1), putative (AFU_orthologue;
           AFUA_3G06790) [Aspergillus nidulans FGSC A4]
          Length = 869

 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 148/348 (42%), Gaps = 79/348 (22%)

Query: 431 ELSNRVLRKYKDLADRFLRVTFMD-EGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFK 489
           ++SN V+R+Y +LAD FLRV F D + +  ++A V          D T++       V  
Sbjct: 247 DISNCVIRRYANLADNFLRVRFTDAKHIGRIHATV----------DNTMDE------VLT 290

Query: 490 RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAK 549
           R++  L+ G  +   ++ FLAF +S                                   
Sbjct: 291 RIKRALANGITIGSTRYEFLAFGNS----------------------------------- 315

Query: 550 CAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV 609
                  CFS+T A      T    ++ DI+ NGY+FSDG+G+I+  LA  V  +LK+  
Sbjct: 316 -----SSCFSTTRAISGC--TAHVKKIDDIEGNGYIFSDGVGRISKFLAQIVKSELKIKT 368

Query: 610 --NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGF 667
               PP AYQ R  GCKG++  +P +     + +R+S  KF +    LEI  W++F    
Sbjct: 369 PTKEPPSAYQFRLVGCKGMLIVFP-QARPQEVHIRKSQFKFAALSQGLEIIRWSQFTVAS 427

Query: 668 LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLS 727
           LNRQ+I +LSTL + D++F     +ML  L++ +     A  +L         T  I L 
Sbjct: 428 LNRQLILVLSTLGITDKVFHLKLKTMLRNLDEAMESDPKAAHLLRKYVDPNQVTLTIYLP 487

Query: 728 A--------------GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761
                            NP   P   G +  +RA    GL     I V
Sbjct: 488 KNGEKYEIIEGICILARNPSLHP---GGIRVVRAVNAPGLHHLKDIVV 532



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 55/75 (73%)

Query: 806 KKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDL 865
           +K ++I+G  ++A+NP LHPG IR++ AV+ P LHHL D +V P+ GDR   +  SGSDL
Sbjct: 491 EKYEIIEGICILARNPSLHPGGIRVVRAVNAPGLHHLKDIVVLPRTGDRDIASMCSGSDL 550

Query: 866 DGDLYFVTWDENLIP 880
           DGD + V WD++L+P
Sbjct: 551 DGDDFLVIWDQDLLP 565


>gi|297832162|ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297329803|gb|EFH60222.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 981

 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 203/484 (41%), Gaps = 78/484 (16%)

Query: 585  VFSDGIGKITPDLAMEV-----------AQKLKLDVNP-PPCAYQIR--YAG-------- 622
            + SDG G I+ DLA              ++ ++   N  PP   Q R  Y G        
Sbjct: 401  IHSDGTGYISEDLARMCPLNIFKGKCLRSENIQEACNQDPPLLIQFRMFYDGYAVKGTFL 460

Query: 623  -----CKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLS 677
                 C   V   P+    I++S   S++ F + +    + +    +   L++ ++ LLS
Sbjct: 461  LNKKLCPRTVQVRPSM---IKVSKDPSLSNFSTFNALEVVTTSNPPRRTKLSKNLVALLS 517

Query: 678  TLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPH 737
               +P+E F  +  + L +   +  +   A  V           AA M+  G  P  EPH
Sbjct: 518  YGGIPNEFFLDILLNTLEESKSIFYNKHAALNVALNYGEMDDQNAAQMILVGI-PLDEPH 576

Query: 738  LRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVL-EGGQCFIQVSEPFLGNCFS 796
            L+  L+ +   +   L+   R+ V    +LMG +D  G L E   C I  S         
Sbjct: 577  LKNHLSILLKTEKNDLK-AGRLPVTESYYLMGTVDPTGELKEDEVCVILES--------- 626

Query: 797  KHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD----CLVFPQKG 852
                          I G V++ +NP LH GDI IL+A     L          + FPQKG
Sbjct: 627  ------------GQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKYAVFFPQKG 674

Query: 853  DRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS--W----PPMEYNAAEAKTLTRPVDQR 906
             R   +E +G D DGD+YF++ +  L+   K S  W    PP + N+  A +   P +  
Sbjct: 675  PRSLGDEIAGGDFDGDMYFISRNPELLEHFKPSEPWVSLTPPSKSNSGRAPSQLSPEELE 734

Query: 907  DIIE-------FFAKHMVN---ENLGTICNAHVVHADH--SEYGALDENCILLAELAATA 954
            + +        F A +++    ++  TI +  ++  D    E   + +  + L ++   A
Sbjct: 735  EELFEMFLKAGFHASNVIGIAADSWLTIMDRLLILGDERAEEKAEMKKKMLKLIDIYYDA 794

Query: 955  VDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEV 1014
            +D PK G  V +P  L+P ++P +M +E  + +KS  ILG +Y   K    E+ + SSE+
Sbjct: 795  LDAPKKGDKVYLPNELRPDIFPHYMERE--KKFKSTSILGLIYDFVKSQTTEEPTPSSEI 852

Query: 1015 DINP 1018
               P
Sbjct: 853  SKLP 856


>gi|340515396|gb|EGR45650.1| predicted protein [Trichoderma reesei QM6a]
          Length = 989

 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 170/379 (44%), Gaps = 59/379 (15%)

Query: 541 RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAME 600
           R + + IAK  +R+    S T+ TV +   ++     D++R   V +DGIG+I+P LA +
Sbjct: 250 RNSQQPIAKLFSRLALSLSRTWPTVVLEKEQILVRRKDLEREK-VMNDGIGRISPSLAKK 308

Query: 601 VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR--MSLRESMNKFQ-----SHHT 653
           VA  L L  + P C +Q R    KG+        D  R  + +  S  K++      HH 
Sbjct: 309 VADALGLS-DCPSC-FQGRLGSAKGMWLI-DVDSDDERDWVEIYPSQTKWECDFDDPHHR 365

Query: 654 TLEICSW-TRFQPGFLNRQIITLLSTLN-VPD-------------------EMFWSMQDS 692
           TLEI +W +  +   LN+Q I +L   +  PD                   E   +M++ 
Sbjct: 366 TLEIRNWPSELKSASLNQQFIPILEAQSPEPDGMRRVMAEHLERALHADLGEQVAAMKEP 425

Query: 693 MLSKL---------NQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGML- 742
           M  +L         N  L+D    F  L        +  A +L +GF+ +   +L+ ++ 
Sbjct: 426 MSLRLWIHQSGPSKNDRLLDGSTKF--LAGLPDSNADKVAFLLDSGFDQKKMKYLQDIVW 483

Query: 743 -TCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSR 801
             C R A +  L+ K  I VP   ++    D    LE  +  +  S  F  + FS     
Sbjct: 484 DMCKRKADV--LKTKMNITVPCSAYIYMAADFTSTLEEDEVHLSFSTKFQADGFSD---- 537

Query: 802 FAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEA 860
                   +++G  +++A+ P   P DI+ ++ V  PEL  L D ++F  KG  P  ++ 
Sbjct: 538 -------TLLEGMDILVARVPAHLPSDIQRVKVVSRPELRKLKDVIIFSTKGGVPLAHKL 590

Query: 861 SGSDLDGDLYFVTWDENLI 879
           SG D DGD+ +V WD+N++
Sbjct: 591 SGGDYDGDMAWVCWDQNIV 609


>gi|336378305|gb|EGO19463.1| hypothetical protein SERLADRAFT_442939 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 733

 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 154/577 (26%), Positives = 240/577 (41%), Gaps = 121/577 (20%)

Query: 583  GYVFSDGIGKITPDLAMEVAQKLK-----LDVNPPPCAYQIRYAGCKGVVACWPAKGDGI 637
            G V +DG G I+  L  EV   L+       V   P AYQ R  G KGV+   P + +G 
Sbjct: 126  GNVMTDGCGTISVALCNEVWSSLRNRKKHKHVKNVPSAYQFRIGGAKGVLVQDP-RLEGN 184

Query: 638  RMSLRESMNKFQSHHT-TLEICSWTRFQPG--FLNRQIITLLSTLNVPDEMFWSMQDSML 694
             + LR S  KF +    TL+I S T  QP   FLNR +I LL  L        ++Q++ +
Sbjct: 185  VVCLRPSQTKFDAPGIRTLDIQS-TSSQPKAMFLNRPLIVLLEYLGTDSNHIIALQNNAI 243

Query: 695  SKL---NQMLVDSDVAFEVLTAACAEQ-----GNTAAIM------LSAGFNPQTEPH--L 738
            S+    +   +D+   F+      + +      N A ++       S G    +  H  +
Sbjct: 244  SEAQTAHNSFLDASKMFQKNNFGASFRLPSLFHNLATLLDIHPGDSSLGLVSTSWKHDLV 303

Query: 739  RGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKH 798
              +L C+    L  L+ +A I VP    L+G  DE                         
Sbjct: 304  AKLLQCVSTYALRELKYRAHIAVPGSYTLLG--DE------------------------- 336

Query: 799  GSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTN 858
                  T   + I+G V+I ++  +HPGD++++ AV HPEL HL + +VF  KG+R   +
Sbjct: 337  -----RTGLYKSIEGRVLITRSAQIHPGDVQVVTAVRHPELSHLTNVVVFSCKGNRSLAS 391

Query: 859  EASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVN 918
               G  L GD + +  DE+L P  KK   P  Y++   K    P    DI          
Sbjct: 392  CLGGGGLAGDDFNLLLDESLFP--KKVAKPGTYDSLPIKKTINPCSASDI---------- 439

Query: 919  ENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMP--AHLKPKLYP 976
                         AD  + G     C+ LA+ A+ AVDFPKTG  V M     L     P
Sbjct: 440  -------------ADVKDPGC--SECLQLAQYASHAVDFPKTGSPVRMKDLPQLSGLSKP 484

Query: 977  DFMGKEAY-----QSYKSNKILGRLYRQ------SKDAYDEDISVSSEVDI-----NPVD 1020
            DF+  E       Q Y S K+LG L+R+      +   ++ D S S    +     N + 
Sbjct: 485  DFLAPEGANIRSDQYYFSPKLLGVLHRRVPLSEWTPTPWNSDDSPSDWKTVWNALHNLIK 544

Query: 1021 IH---------YDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVN-REEELVTGHI 1070
            +          Y +D ++ + + F+ + ++++     +++ +     V+  E EL++G I
Sbjct: 545  MKNKQLGLLLIYPSD-DLLKEMTFLLNDYSEQLFVIAKVHTISRHNDVHVSEAELISGTI 603

Query: 1071 ---WSMPKYNSRKQGELKERLKHSYSALRKEFRQVFE 1104
               WS    N RK+ E  + +      L K  RQ  +
Sbjct: 604  MANWS----NHRKRSEAVDSMNLQTQVLAKNVRQALQ 636


>gi|401412157|ref|XP_003885526.1| hypothetical protein NCLIV_059230 [Neospora caninum Liverpool]
 gi|325119945|emb|CBZ55498.1| hypothetical protein NCLIV_059230 [Neospora caninum Liverpool]
          Length = 1367

 Score =  112 bits (281), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 139/537 (25%), Positives = 217/537 (40%), Gaps = 116/537 (21%)

Query: 394  LLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKY-KDLADRFL-RVT 451
            L + P L  G  Q    + V  L+ TP K        EL +RV R+Y +++A   L RV 
Sbjct: 508  LERGPPLAFGVNQAAAGIPVLHLLATPLKVLVRGIYCELGSRVTRQYAREVATGLLVRVA 567

Query: 452  FMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAF 511
            F++E  + M++++                 +Q   + +R+R ++ GG  +   ++ F A 
Sbjct: 568  FVEEDGRPMSSSL---------------HRAQDESLQERMRLMMVGGLSVGHERYKFFAA 612

Query: 512  SSSQLRDCSAWFF--SEDGKTSVLDIKKWMGRFTDKNIAK--CAARMGQCFSSTYATVEV 567
            S SQLR+   W    S D + S   I   +G F D +I+      R+G CFSST   +++
Sbjct: 613  SLSQLREGCCWMIRVSGDTRLSAEAILSRLGVF-DSSISPGVLTKRLGVCFSSTLPAIDI 671

Query: 568  PPTEVDPELPDIKRNG------------------------------YVFSDGIGKITPDL 597
               E+   +PD+  +                               +VF+DG G I+ DL
Sbjct: 672  RDEEML-LIPDVTSSAAAPTAREEAAENEGRQARARPIPLAVDSPEFVFTDGSGAISLDL 730

Query: 598  AMEVAQKL-KLDVNPPPCAYQIRYAGCKGVVACWPA--------KGDGIRMSL-RESMNK 647
               +  +L  L  +    A+QIR  G KG++   PA          + ++  L  +SM K
Sbjct: 731  WRRIVARLPALHTS---SAFQIRLGGIKGMLVLHPAFPRPVPHHPAESLKHILVSQSMQK 787

Query: 648  FQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLS------------ 695
            F S    LE+  ++R  P +LNRQ+I LL TL V   +F  +Q  ML             
Sbjct: 788  FHSSSRCLEVNDFSRRFPYYLNRQVILLLDTLGVGFPVFERLQKRMLQFLRDVDTRAGAI 847

Query: 696  -KLNQMLVDSDVAFEVLTAAC----AEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQL 750
              L+ + +D ++        C    A +G  A +     F   +  +  G  +   A   
Sbjct: 848  KFLSTLAIDQNLGMSSFAQVCLDFIALRGRGANLFGVPDFT-HSLAYDHGWRSSPSARVF 906

Query: 751  WGLREKARIFVPAGRWLM---GCLDELGVLEGGQCFIQVSEP-----------FLGNCFS 796
             GL E   +FV   R      G    + V  G       ++            F G   +
Sbjct: 907  AGLPE---VFVHVTRSPFSDEGMARHVAVATGKSWLSAEADAQAERARRRLGRFPGGSVA 963

Query: 797  KHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDH-------PELHHLYDCL 846
              GS        +VI+G V + +NPCL PGDI++  AV H       P L  L  CL
Sbjct: 964  AFGS--------EVIQGVVAVCRNPCLFPGDIQLCFAVAHGDLPDDSPLLRPLTGCL 1012


>gi|358377627|gb|EHK15310.1| hypothetical protein TRIVIDRAFT_122493, partial [Trichoderma virens
           Gv29-8]
          Length = 1284

 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 164/380 (43%), Gaps = 62/380 (16%)

Query: 543 TDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVA 602
           +++ + K  +R+    S T+ T+ +   ++  +  D+K    V +DGIG+I+P LA +V 
Sbjct: 546 SEQPVTKLFSRLALSLSRTWPTILLDDHQIIRKRRDLKPGKMVMNDGIGRISPSLAKKVT 605

Query: 603 QKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQS-----------H 651
           + L L  + P C +Q R    KG+   W    D    S R+ +  + S           H
Sbjct: 606 EALGLS-DCPSC-FQGRLGSAKGM---WLIDVDSEEDSERDWVEVYPSQRKWECDYDDPH 660

Query: 652 HTTLEICSW-TRFQPGFLNRQIITLLSTLN-VPDEM-------------------FWSMQ 690
           H TLEI +W +  +   LN+Q I +L   +  PD M                     +M+
Sbjct: 661 HRTLEIRNWPSELKSASLNQQFIPVLEARSPQPDAMRRVISEHLQRALHADLGEQAAAMK 720

Query: 691 DSMLSKL---------NQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGM 741
           + M  +L         N   +D    F  L        +  A +L +GF+ +   +L+ +
Sbjct: 721 EPMSLRLWIHQSGPSKNDRSLDGSAKF--LAGLPDSGADKVAFLLDSGFDQRRMKYLKEL 778

Query: 742 L--TCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHG 799
           +   C + A    L+ K  I +P   ++    D    LE G+  +  S  F    FS   
Sbjct: 779 VWDMCKKKADT--LKTKMNITIPCSAYIYMAADFSSTLEEGEVHLSFSTKFQAEGFSDTL 836

Query: 800 SRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNE 859
               +          +++A+ P   P DI+ +  V  PEL  L D ++F  KGD+P  + 
Sbjct: 837 LEHMD----------ILVARAPAHFPSDIQRVRVVSRPELRKLKDVIIFSTKGDKPLADM 886

Query: 860 ASGSDLDGDLYFVTWDENLI 879
            SG D DGD+ +V WD+N++
Sbjct: 887 LSGGDYDGDMAWVCWDQNIV 906


>gi|4138610|emb|CAA09895.1| RNA-directed RNA polymerase [Triticum aestivum]
          Length = 107

 Score =  111 bits (278), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/107 (53%), Positives = 70/107 (65%), Gaps = 2/107 (1%)

Query: 855 PHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAK 914
           PH NE SGSDLDGD+YFV+WD +LIP   +   PM+Y  A  +TL   V   ++ E+F  
Sbjct: 1   PHPNECSGSDLDGDIYFVSWDPDLIP--TRMVAPMDYTPAPTETLDHDVMIEEVHEYFTN 58

Query: 915 HMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
           ++VNE+LG I NAHVV AD     A    CI LAEL + AVDFPKTG
Sbjct: 59  YIVNESLGIIANAHVVFADREILKAESTPCIKLAELFSIAVDFPKTG 105


>gi|361130100|gb|EHL01954.1| putative RNA-dependent RNA polymerase 2 [Glarea lozoyensis 74030]
          Length = 263

 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 74/126 (58%), Gaps = 13/126 (10%)

Query: 755 EKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGF 814
           ++ RI +P  R L G  D  GVL+ G+C ++V+    G  ++  G               
Sbjct: 123 QRCRILIPKSRLLFGICDAWGVLKEGECAVKVTMDGDGQPYTLKGMD------------- 169

Query: 815 VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTW 874
           V++ +NPCLHPGD++  +AV+  EL HL DC+VFP +G RP  +  SG DLDGD +FV W
Sbjct: 170 VLVTRNPCLHPGDLQKFKAVERDELAHLVDCIVFPTRGARPAADLMSGGDLDGDTFFVCW 229

Query: 875 DENLIP 880
           D +LIP
Sbjct: 230 DSDLIP 235



 Score = 46.6 bits (109), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 575 ELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL---DVNPPPCAYQIRYAGCKGVVACWP 631
           ++PDI+   YVF+DG G I+  LA E+++ L++   +    P  +QIRY G KGV+   P
Sbjct: 10  DIPDIEAQDYVFTDGCGLISKHLARELSRVLRVAFRNTRYTPSVFQIRYRGYKGVLMLDP 69

Query: 632 A 632
            
Sbjct: 70  G 70


>gi|242051713|ref|XP_002455002.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
 gi|241926977|gb|EES00122.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
          Length = 1127

 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 174/404 (43%), Gaps = 54/404 (13%)

Query: 653  TTLEICSWTRFQP--GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEV 710
             +LE+ + T ++P   F +R +I+LL    V +E F  +  + L  +N        + EV
Sbjct: 629  NSLEVIT-TSYRPKRAFTSRFLISLLHYGRVREEFFLDLLRNALEDVNNARHRPRNSLEV 687

Query: 711  LTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGC 770
                     + +A M+ +G  P+ E +L+  L  +   +  GL+E  RI +    +LMG 
Sbjct: 688  AFNHADLDDSMSARMILSGIQPEDEAYLQSQLALMAKVERKGLKE-GRIPIDDTYYLMGT 746

Query: 771  LDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRI 830
             D  G L+  Q  I +    L                     G V++ K+P LH GDI I
Sbjct: 747  TDPTGTLKRDQVCIILDNGQL--------------------SGKVLVYKHPGLHFGDIHI 786

Query: 831  LEAVDHPELHHLYD----CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW 886
            L A     L  +       + FP  G R   +E + SD DGDLY+V+ +  L+    K  
Sbjct: 787  LTATYIDGLEKIVGNSKYAIFFPTCGPRSLADEMANSDFDGDLYWVSRNPQLLEGFTKQR 846

Query: 887  PPMEYNAAEAKT-LTRPVDQRD-------IIEFF-AKHMVNENLGTICNAHVVHADH--- 934
             P        KT L +P D            EF  A+   +  LG   N  +   D    
Sbjct: 847  KPWVRRIQPTKTELKKPQDYTGPKLESLLFHEFLRARFTPSYVLGAASNCWLALMDRLLT 906

Query: 935  -----SEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKS 989
                 SE  A+ +  + L ++   A+D PK G  +T+P  LK K YP FM ++  +SY S
Sbjct: 907  GGVPKSERQAIKKKMLDLVDIYYLALDAPKEGNKITVPGELKVKKYPHFMERDEKKSYTS 966

Query: 990  NKILGRLYRQSKDAYDEDISVSSEVD--INPVDIHYDTDLEVPE 1031
              +LG++       YDE +   SE+D  I  V +   T+++V E
Sbjct: 967  TSVLGKI-------YDEVMLKESEIDPEIKIVPLSCFTEVKVSE 1003


>gi|440633788|gb|ELR03707.1| hypothetical protein GMDG_06341 [Geomyces destructans 20631-21]
          Length = 1330

 Score =  109 bits (273), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 165/370 (44%), Gaps = 50/370 (13%)

Query: 549 KCAARMGQCFSSTYATVEVPPTEVDPELPDI-KRNGYVFSDGIGKITPDLAMEVAQKLKL 607
           K  +R+    S TYAT+ +  TE+     D   ++G V +DG G+I+  LA  +AQKLKL
Sbjct: 626 KLFSRISLGLSKTYATIPLRATEITFVRYDYCSKSGEVMNDGCGQISRKLAHHIAQKLKL 685

Query: 608 DVNPPPCAYQIRYAGCKGV-VACWPAKGDGIRMSLRESMNKFQSH-------HTTLEICS 659
           D  P   A+Q R  G KG+ +      GD   + +  S  K+ ++       H   E+  
Sbjct: 686 DYTP--SAFQARIGGAKGMWIVDVKDFGDKTNIKIYPSQVKWDNNSFFVDPSHRIFEVIC 743

Query: 660 WTR-FQPGFLNRQIITLL------STLNVPDEMFWSMQDSMLSKLNQM--LVDSDVAFEV 710
           W+R  +   LN Q + +L      +   + D +   +++ +  ++++    +DS  AF  
Sbjct: 744 WSRPVRSATLNLQFLPILEDRGRNNGKGMRDALSRVLENGLTYEISRQREAMDSPQAFRK 803

Query: 711 LTAACA--------------------EQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQL 750
                A                     QG    ++L AGFNP+    LR +      A+ 
Sbjct: 804 WVRETAPRITDRNKLGQVGYEAGLPKSQGEKMNLLLDAGFNPKELCFLRDLAWKANVARG 863

Query: 751 WGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
             L++K  I V    +++  +D  G+L   +  +  S       F    + F +T    +
Sbjct: 864 EILKKKLNISVGRSAYMLMVVDFAGILGPREVHVGFS-----TAFKDESTDFCDT----I 914

Query: 811 IKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDL 869
           +    +++A++P  +  DI+ + AV  PEL  L D +VF  +GD P   E SG D DGD+
Sbjct: 915 LSNMDILVARSPAHYTSDIQKVRAVFKPELSALKDVIVFSTRGDFPLAGELSGGDYDGDI 974

Query: 870 YFVTWDENLI 879
            +V W   ++
Sbjct: 975 AWVCWQTEIV 984


>gi|383145820|gb|AFG54512.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
          Length = 125

 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 81/119 (68%), Gaps = 5/119 (4%)

Query: 1070 IWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFE-KMDSDCELLSEDEKNALFERKASA 1128
            I ++ K NSRKQGE+KERL+H+Y ALR EFR +F+ K D +   + E  K + +E KASA
Sbjct: 1    ISTLSKLNSRKQGEIKERLQHAYRALRNEFRLIFQGKTDGE---IPEPCKRSEYEAKASA 57

Query: 1129 WYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVN 1187
            WY VTYHP WV+K+ +L E D   +  LLSF WI+ DYLA+IK++ +   N+D S  V 
Sbjct: 58   WYHVTYHPTWVQKARELTELDGYFTSPLLSFPWISVDYLAQIKLQ-KLCPNVDYSSRVK 115


>gi|361066837|gb|AEW07730.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
          Length = 125

 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 5/119 (4%)

Query: 1070 IWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFE-KMDSDCELLSEDEKNALFERKASA 1128
            I ++ K NSRKQGE+KERL+H+Y ALR EFR +F+ K D +     E  K + +E KASA
Sbjct: 1    ISTLSKLNSRKQGEIKERLQHAYRALRNEFRLIFQGKTDGET---PEPCKRSEYEAKASA 57

Query: 1129 WYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVN 1187
            WY VTYHP WV+K+ +L E D   +  LLSF WI+ DYLA+IK++ +   N+D S  V 
Sbjct: 58   WYHVTYHPTWVQKARELTESDGYFTSPLLSFPWISVDYLAQIKLQ-KLCPNVDYSSRVK 115


>gi|42569168|ref|NP_179583.3| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
 gi|322967572|sp|O82188.2|RDR5_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 5; Short=AtRDRP5;
            AltName: Full=RNA-directed RNA polymerase 5
 gi|330251850|gb|AEC06944.1| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
          Length = 977

 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 119/484 (24%), Positives = 199/484 (41%), Gaps = 78/484 (16%)

Query: 585  VFSDGIGKITPDLA------------MEVAQKLKLDVNPPPCAYQIR--YAG-------- 622
            + SDG G I+ DLA            +      +     PP   Q R  Y G        
Sbjct: 397  IHSDGTGYISEDLARMCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFL 456

Query: 623  -----CKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLS 677
                 C   V   P+    I++S   S++ F + +    + +    +   L++ ++ LLS
Sbjct: 457  LNKKLCPRTVQVRPSM---IKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLS 513

Query: 678  TLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPH 737
               +P+E F  +  + L +   +  +   A              AA M+  G  P  EPH
Sbjct: 514  YGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAAQMILVGI-PLDEPH 572

Query: 738  LRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVL-EGGQCFIQVSEPFLGNCFS 796
            L+  L+ +   +   L+   ++ V    +LMG +D  G L E   C I  S         
Sbjct: 573  LKNYLSILLKTEKNDLKA-GKLPVTESYYLMGTVDPTGALKEDEVCVILESGQ------- 624

Query: 797  KHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD----CLVFPQKG 852
                          I G V++ +NP LH GDI IL+A     L          + FPQKG
Sbjct: 625  --------------ISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKG 670

Query: 853  DRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS--W----PPMEYNAAEAKTLTRPVDQR 906
             R   +E +G D DGD+YF++ +  L+   K S  W    PP + N+  A +   P +  
Sbjct: 671  PRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELE 730

Query: 907  DIIE-------FFAKHMVN---ENLGTICNAHVVHADH--SEYGALDENCILLAELAATA 954
            + +        F A +++    ++  TI +  ++  D    E   + +  + L ++   A
Sbjct: 731  EELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDA 790

Query: 955  VDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEV 1014
            +D PK G  V +P  LKP ++P +M ++  + ++S  ILG ++   K    E+ S SSE+
Sbjct: 791  LDAPKKGDKVYLPNKLKPDIFPHYMERD--KKFQSTSILGLIFDFVKSQTTEEPSPSSEI 848

Query: 1015 DINP 1018
               P
Sbjct: 849  SKLP 852


>gi|358392113|gb|EHK41517.1| hypothetical protein TRIATDRAFT_321718 [Trichoderma atroviride IMI
           206040]
          Length = 1316

 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 108/445 (24%), Positives = 188/445 (42%), Gaps = 62/445 (13%)

Query: 529 KTSVLDIKKWM-----GRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG 583
           K  + D+ +W       R  ++ + K  +R+    S T+ TV++   ++     D+    
Sbjct: 551 KMKISDLLRWAISIDNKRNAEQPVTKLFSRLALSLSRTWPTVQLERHQIRIRTKDLGTGK 610

Query: 584 YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGV-VACWPAKGD------- 635
            V +DGIG+I+  LA +VA+ L L  + P C +Q R    KG+ +    ++GD       
Sbjct: 611 MVMNDGIGRISASLAKKVAELLGL-TDCPSC-FQGRLGSAKGMWLIDVDSEGDFEEDFEK 668

Query: 636 ---GIRMSLRESMNKFQS-HHTTLEICSW-TRFQPGFLNRQIITLLSTLNVPD------- 683
               I  S R+    F+  HH TLEI +W    +   LN+Q I +L   +          
Sbjct: 669 DWVEIYPSQRKWECDFKDVHHRTLEIRNWPAELKSASLNQQFIPVLEARSKDSGLMRRVM 728

Query: 684 -------------EMFWSMQDSMLSKL---------NQMLVDSDVAFEVLTAACAEQGNT 721
                        E   +M+D+M  +L         N  L+D    F  L        + 
Sbjct: 729 SSHLQRALHADLGEQTDAMKDTMSLRLWIHQSGPSRNDRLLDGSAEF--LAGLPNNSADK 786

Query: 722 AAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQ 781
            A +L +GF+ +   +L+  +  I   +   L+ K  I VP   ++    D    LE G+
Sbjct: 787 VAFLLDSGFDQKRLKYLKDAVLDIYQKKADTLKTKMNITVPCSAYVYMAADFSSTLEEGE 846

Query: 782 CFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHH 841
             +  S  F    FS       +T   Q+    +++A+ P   P DI+ +  V  PEL  
Sbjct: 847 VHLSFSTKFQVEGFS-------DTLLEQMD---ILVARAPAHLPSDIQRVRVVSRPELRR 896

Query: 842 LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR 901
           L D ++F  KG  P  ++ SG D DGD+ +V WD++++   + +  P + +  +   L +
Sbjct: 897 LKDVIIFSTKGSVPLADKLSGGDYDGDIAWVCWDQSIVQNFQNASVPEQMDFIKGGYLRK 956

Query: 902 PVDQ-RDIIEFFAKHMVNENLGTIC 925
              +  DI++       N+N   + 
Sbjct: 957 NTTKFTDILDGVTSGEFNQNADNVS 981


>gi|383145806|gb|AFG54505.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
 gi|383145808|gb|AFG54506.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
 gi|383145810|gb|AFG54507.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
 gi|383145812|gb|AFG54508.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
 gi|383145814|gb|AFG54509.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
 gi|383145816|gb|AFG54510.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
 gi|383145818|gb|AFG54511.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
 gi|383145822|gb|AFG54513.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
 gi|383145824|gb|AFG54514.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
 gi|383145826|gb|AFG54515.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
 gi|383145828|gb|AFG54516.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
 gi|383145830|gb|AFG54517.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
 gi|383145832|gb|AFG54518.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
 gi|383145834|gb|AFG54519.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
 gi|383145836|gb|AFG54520.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
 gi|383145838|gb|AFG54521.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
 gi|383145840|gb|AFG54522.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
          Length = 125

 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 5/119 (4%)

Query: 1070 IWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFE-KMDSDCELLSEDEKNALFERKASA 1128
            I ++ K NSRKQGE+KERL+H+Y ALR EFR +F+ K D +     E  K + +E KASA
Sbjct: 1    ISTLSKLNSRKQGEIKERLQHAYRALRNEFRLIFQGKTDGET---PEPCKRSEYEAKASA 57

Query: 1129 WYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVN 1187
            WY VTYHP WV+K+ +L E D   +  LLSF WI+ DYLA+IK++ +   N+D S  V 
Sbjct: 58   WYHVTYHPTWVQKARELTELDGYFTSPLLSFPWISVDYLAQIKLQ-KLCPNVDYSSRVK 115


>gi|402579794|gb|EJW73745.1| hypothetical protein WUBG_15348 [Wuchereria bancrofti]
          Length = 203

 Score =  107 bits (267), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/174 (38%), Positives = 95/174 (54%), Gaps = 10/174 (5%)

Query: 691 DSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQL 750
           D  L++L  ML++ D   E L      + N + + L+ GF    EP  R +L       L
Sbjct: 29  DVHLTQLADMLMNEDKCRERLNE-LPLRVNVSRLTLARGFALTQEPFFRSLLRAHIKCTL 87

Query: 751 WGLREKARIFVPA--GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKL 808
             L  K +I +P   GR + G +DE G L+ GQ F+Q +     N + K  S+ A     
Sbjct: 88  KKLIAKIQIQIPPHLGRSMFGVMDETGQLQWGQIFVQCTR----NIWLKTPSQSAAKI-- 141

Query: 809 QVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASG 862
            ++KG V++ KNPC+  GD+R+ EAVD PELHHL D +VFPQ G RPH +E +G
Sbjct: 142 -ILKGKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDVVVFPQHGPRPHPDEMAG 194


>gi|345568648|gb|EGX51541.1| hypothetical protein AOL_s00054g240 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1615

 Score =  107 bits (267), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 126/491 (25%), Positives = 196/491 (39%), Gaps = 89/491 (18%)

Query: 544  DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG-----------YVFSDGIGK 592
            D    K  AR+   FS+T  +V     E+D  + DIK  G           Y  +DG G 
Sbjct: 856  DSKQCKLYARIALGFSTTTPSVVFDKNEIDYSIKDIKAKGLELGRDGKLPEYSLTDGCGL 915

Query: 593  ITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVV---ACWPAKGDGIRMSLRESMNKF- 648
             +P +   VA++L L    PP A Q R    KG+       P   + +R+ +R   NKF 
Sbjct: 916  ASPAVFRAVARQLGLPY--PPSAVQARIGAAKGLWIMDPSIPLDSEELRIRIRPDQNKFD 973

Query: 649  ----QSHHTTLEICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSM-----QDSMLSKLN 698
                +  H TL+IC+ ++  +P  LN Q I +L    V +     +     ++ +    N
Sbjct: 974  GISLEPEHRTLDICNTSKPLKPSALNLQFIVILLHNGVTEATLEQLLREDIRNEVTELFN 1033

Query: 699  QMLVDSDVAF------EVLTAACAEQGNTAAI--------------MLSAGFNPQTEPHL 738
               +D D AF       V  +     G   A+              +++AGF  Q +  L
Sbjct: 1034 GGRLD-DGAFLRKYLERVKLSGSQRDGRAIAMKGRIPLGLAERAIDLINAGFTLQNQ-TL 1091

Query: 739  RGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKH 798
            +     +       L++K RI +P         D  G L+ GQ +++             
Sbjct: 1092 KDWFEKVLTDHCDTLKDKMRIRIPWSCQPYCVPDPSGKLKKGQVYLRFGPE--------- 1142

Query: 799  GSRFAETKKL---QVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVF---PQKG 852
             S+F + K +    V++G V++ +NP     DI+ + AVD PEL  L D +VF   P+  
Sbjct: 1143 -SKFIDPKTMMAIDVLRGGVLVGRNPAHFASDIQKVTAVDVPELRFLTDVIVFPADPESN 1201

Query: 853  DRPHTNEASGSDLDGDLYFVTWDENLIPPSK-------KSWPPMEYNAAEAKTLTRPVDQ 905
            DR   +  SG D DGD  +  WD+ L+   K        +   + Y   E K +      
Sbjct: 1202 DRSLADYLSGGDYDGDRVWTCWDQRLVGEFKGELVHGPSTVDMVGYFEPERKMMWEDFGG 1261

Query: 906  RD-----IIEFFAKHM---VNENLGTICNAHVVHADHSEYGALDENCILLAELA------ 951
             D        F  KH+   ++E L   C +      ++ YG  DE  +L  E+A      
Sbjct: 1262 SDESPDAFSNFIQKHLETAMDEELLGQCTSLFEKVVYNNYG--DERGVLNLEIAKKLGVA 1319

Query: 952  -ATAVDFPKTG 961
                VD PK G
Sbjct: 1320 CGMLVDAPKQG 1330


>gi|170579664|ref|XP_001894930.1| RNA-directed RNA polymerase 1 [Brugia malayi]
 gi|158598304|gb|EDP36223.1| RNA-directed RNA polymerase 1, putative [Brugia malayi]
          Length = 312

 Score =  107 bits (266), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 30/226 (13%)

Query: 413 VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
           VR+++ITPT+   + PE+ + NRVLR +    +  LR+ F D+    +  N +  F+   
Sbjct: 77  VRKVIITPTRIILVVPELLMGNRVLRTFDKDGNGALRIQFRDDDGTPLRVNTVGLFL--- 133

Query: 473 VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
           ++  T N+              LS G Y+  R F +L  S+SQ+RD   +F+ +      
Sbjct: 134 IQTTTFNT--------------LSRGIYIGDRHFVYLGSSNSQMRDNGCYFYDDGKGGQA 179

Query: 533 LDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDI------KRNGYVF 586
             I++ +G+F   NI K  +RMGQCF+       +   +   +  DI       +  Y+F
Sbjct: 180 HKIREQLGKFDSCNIPKMMSRMGQCFTQAKRCKVILKRQKYNKTYDIIGGRDTNQASYIF 239

Query: 587 SDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPA 632
           SDG+GK++     E A+K+  D+        IR+ G KGV++  P+
Sbjct: 240 SDGVGKVSK----EFAEKIAFDIG---LGTSIRHRGIKGVLSIDPS 278


>gi|105990550|gb|ABF81697.1| truncated MOP1 [Zea mays]
          Length = 310

 Score =  106 bits (264), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 143/308 (46%), Gaps = 45/308 (14%)

Query: 247 DDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITY------LGERRVQ----V 296
           D    W+R  DFTP+ + G C++  + +S      +S ++        LGE  +      
Sbjct: 31  DAKFAWVRALDFTPNSSFGECSTLVLKLSK--GASVSYILESLPFSGELGELAIASMDVF 88

Query: 297 DSLSRPITIREEPD-FEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFF 355
            S S  + + + P+ F VP               +E++F +N+++H G +    ++   F
Sbjct: 89  GSSSNVVPLVDCPNGFSVP---------------YEVLFRLNSLVHMGKLVARHVNADLF 133

Query: 356 DLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRR 415
            +L   S +      + +   K   ++  + ++     +    +     ++   ++   R
Sbjct: 134 KVLEDLSIDTLRRIFEKMSKLKSTCYEPLQFIRHEAHSMNMRKKALSNKRESGKLMRCYR 193

Query: 416 LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLS------YFI 469
           + ITP+K YCL PE E+SN V++ + + A  F RVTF+DE    ++ N LS      +F 
Sbjct: 194 IHITPSKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSARTEQGFFS 253

Query: 470 APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGK 529
            P+           KT ++ R+ SIL  GF +  +K+ FLAFS+SQLR  S W F+ +  
Sbjct: 254 KPL-----------KTGLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSS 302

Query: 530 TSVLDIKK 537
            +  +I++
Sbjct: 303 LTAENIRR 310


>gi|297738765|emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 189/452 (41%), Gaps = 64/452 (14%)

Query: 585 VFSDGIGKITPDLAMEVAQKL-----KLDVNPPPCAYQIRY--AGC--KGVVAC---WPA 632
           + +DG G I+ DLA+     L       + N  P   Q R    GC  KG +      P 
Sbjct: 355 ILTDGTGFISEDLALRCPNNLCRGKYMNNGNSDPLLIQCRLFNNGCAVKGTLLLNRKLPP 414

Query: 633 KGDGIRMSL--RESMNKFQSHHT--TLEICSWTRFQP--GFLNRQIITLLSTLNVPDEMF 686
           +   IR S+   E+  K     T  ++EI + T  QP   +L++ +I LLS   VP+E F
Sbjct: 415 RTIQIRPSMIKVETDPKLSDTQTVNSVEI-NGTSNQPRRSYLSKYLIALLSYGGVPNEYF 473

Query: 687 WSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIR 746
            ++    L     +      A  V         +    M+ +G  P  EP L   L+ + 
Sbjct: 474 MNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVTRMILSGI-PIDEPFLHHCLSFMV 532

Query: 747 AAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETK 806
             +  GLR   ++ V    +LMG  D  G L+  +  I +           HG       
Sbjct: 533 NEERKGLR-VGKLPVNDCFYLMGTADPTGTLKSDEVCIILD----------HGQ------ 575

Query: 807 KLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD----CLVFPQKGDRPHTNEASG 862
               ++G V++ K+P LH GDI +L A     L          + FP KG R   +E + 
Sbjct: 576 ----VQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMAN 631

Query: 863 SDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVD------QRDIIEFF--AK 914
           SD DGD+Y+V+ ++ L+   + S P M   +       RP D      + ++ + F   +
Sbjct: 632 SDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTR 691

Query: 915 HMVNENLGTICNAHVVHADH---------SEYGALDENCILLAELAATAVDFPKTGKIVT 965
              +  +G   +  +V  D           E   L    + L ++   A+D PK+G  V 
Sbjct: 692 FQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVN 751

Query: 966 MPAHLKPKLYPDFMGKEAYQSYKSNKILGRLY 997
           +   LK + +P FMG+E+  SY S  ILG++Y
Sbjct: 752 VSKELKAEKFPHFMGRES--SYHSTSILGQIY 781


>gi|346978355|gb|EGY21807.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
          Length = 1394

 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 118/465 (25%), Positives = 186/465 (40%), Gaps = 76/465 (16%)

Query: 561  TYATVEVPPTEVDPELPDI-KRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIR 619
            TY T+   P ++     DI  ++G V +DG+ +++P  A  +A+ L L     P AYQ R
Sbjct: 632  TYPTIIFEPGQITHHAEDICSKSGKVMNDGVAEMSPKAAKAIAEYLGL--TDTPSAYQGR 689

Query: 620  YAGCKGV--VACWPAKGDGIRMSLRESMNKFQ-----SHHTTLEICSWTR-FQPGFLNRQ 671
            +   KGV  V   P   D   +    S  K++       H T E+ +  R  +   LN Q
Sbjct: 690  FGSAKGVWIVGTDPENKDDFEIETYPSQRKWECDFWDEDHRTFEVKTEARPLRAANLNMQ 749

Query: 672  IITLL----------------------------------STLNVPDEMFWSMQDSMLSKL 697
             I +L                                  S+++ P +    + +S     
Sbjct: 750  FIPVLVNGDVKRGTDKHRMRNAIAKCLRTTLKEELARQRSSMDDPVQFRQWIHESFFQGY 809

Query: 698  -NQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREK 756
             N  L D ++ F  L      +     ++L AGF P+    LR M   +   +   L+ K
Sbjct: 810  RNDRLRDQNIRF--LAGLPDNEAERVNLLLDAGFQPKKLSFLREMSYKMAFRKCELLKSK 867

Query: 757  ARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGF-V 815
              I V    +    +D  GVLE G+  +  S  F+         +F++T    ++ G  V
Sbjct: 868  MNIKVGCSTYAKMVVDFKGVLEEGEIHLGFSTKFM-----DPDGQFSDT----LLHGMDV 918

Query: 816  VIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 875
            ++A+ P   P DI+ + AV  PEL HL D +VF  KGD P  +  SG D DGD  +V WD
Sbjct: 919  LVARAPAHFPSDIQRVRAVFRPELRHLKDVIVFSIKGDSPLADLLSGGDYDGDQAWVCWD 978

Query: 876  ENLIPPSKKSWPP-------MEYNAAEAKTLTRPVDQ------RDIIEF----FAKHMVN 918
              ++   +    P       + Y      T    V +      R + EF    F  +M  
Sbjct: 979  STIVNSFQNVAYPVVPDLFALGYLEKRKGTFQDLVQKNSSNMDRAVAEFMYESFTFNMKE 1038

Query: 919  ENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKI 963
            + LG IC A+     +   G  + + + L+ L    VD  K G +
Sbjct: 1039 QFLG-ICTAYKERLCYDYNGIDNSDAVALSHLVGNLVDQAKQGIV 1082


>gi|402468935|gb|EJW04011.1| hypothetical protein EDEG_01705 [Edhazardia aedis USNM 41457]
          Length = 1964

 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 98/198 (49%), Gaps = 40/198 (20%)

Query: 535  IKKWMGRF-TDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKI 593
            I++W+G F T KNI K A R+GQ  SST  T+E+        + D   NGY F+DGIG+I
Sbjct: 1262 IRQWLGTFSTIKNIGKYAIRLGQALSSTIGTIEIDNLVC---IDDKFFNGYCFTDGIGRI 1318

Query: 594  TPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSL------------ 641
                A +V + L + +N P  A+QIR  G KGVV+ +  K +     L            
Sbjct: 1319 DYSTAKKVCECLGI-INIPS-AFQIRIGGYKGVVSLYKLKNNNEEKKLKNIIYSSNTNTN 1376

Query: 642  ----------------------RESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTL 679
                                  R SM KF+S H TLE+ ++++  P +LNRQII +L  L
Sbjct: 1377 LNSTNIDTNSNISLVQSNSLYVRNSMKKFESTHRTLEVVAFSQNIPCYLNRQIILILCAL 1436

Query: 680  NVPDEMFWSMQDSMLSKL 697
             + D +   MQD+ + K+
Sbjct: 1437 GINDNIIIEMQDNYIEKI 1454



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 20/113 (17%)

Query: 411  VEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIA 470
            +  R +++TP +     P   L NRVLR +   AD F+RV+F DE L +           
Sbjct: 1091 ISTRSIIVTPLQQIYTYPTKTLGNRVLRTFN--ADFFIRVSFKDENLTS----------- 1137

Query: 471  PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF 523
              VR    N F     +F+++R I+  GF +  RK+ FLA S+SQL+  SAWF
Sbjct: 1138 --VRKYDSNKF-----IFEKIRKIMKEGFLIGNRKYFFLAMSASQLKTHSAWF 1183


>gi|226294787|gb|EEH50207.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 615

 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 121/244 (49%), Gaps = 37/244 (15%)

Query: 361 QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQID-DIVEVRRLVIT 419
           Q+ EV+V AL  +++                E +L++  L +  +QI  + + + R  +T
Sbjct: 378 QASEVDVVALMKLFANAL-------------EIVLRERALSRSNRQIHLNNILIHRAQVT 424

Query: 420 PTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLN 479
           P   Y   P++E  NRVLR Y+   D FLRV F+DE               PI  D    
Sbjct: 425 PCGIYLYGPQLETKNRVLRIYEANVDHFLRVEFVDESGD------------PIRYD---- 468

Query: 480 SFSQKTRVFK-RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE--DGKT--SVLD 534
           S +    +F+ R + +L  G  + GRKF FL FS S LR  + WF +    G T  +   
Sbjct: 469 SRASVDAIFQSRFKGVLKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGGTLYNATV 528

Query: 535 IKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKI 593
           I + +GRF    + AK AAR+GQ FS T  ++ +   ++     D++RNG VFSDG+G I
Sbjct: 529 IIQNLGRFDHIHSPAKQAARIGQTFSDTLTSIPI-SFDMLSVGEDVERNGRVFSDGVGTI 587

Query: 594 TPDL 597
           +P L
Sbjct: 588 SPSL 591


>gi|290988738|ref|XP_002677050.1| predicted protein [Naegleria gruberi]
 gi|284090655|gb|EFC44306.1| predicted protein [Naegleria gruberi]
          Length = 553

 Score =  103 bits (258), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 133/504 (26%), Positives = 203/504 (40%), Gaps = 128/504 (25%)

Query: 413 VRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPI 472
           +RR+  T  K++    E++  N+V R Y    D+F+RV F DE                 
Sbjct: 92  IRRVKSTNLKSFEFA-EIDY-NKVFRYYG--IDKFIRVDFEDE----------------- 130

Query: 473 VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSV 532
            RD T+   + K             GF L G+ F  +  SSS L +   +F  E+    +
Sbjct: 131 -RDSTVMQTTLK-------------GFCLYGQMFKPIGASSSLLSERGVYFTCEEDPMKM 176

Query: 533 LDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGK 592
           +DI    G +  + I    AR    F+ST  T+ V    V  ++      G V SDGIG 
Sbjct: 177 MDI---FGIYASE-IETKIARQCLNFTSTKETIRVHKYIVIDDINSRDGKGIV-SDGIGM 231

Query: 593 ITPDLAMEVA-----QKLKLDVNPPPCAYQIRYAGCKGVVACWPAK-GDGIRMSLRESMN 646
           I+   A  V      Q +       P A+QIR+ G KG++   P K  +G ++ LRESM 
Sbjct: 232 ISYSFAKAVCCSLRDQSIDGKYVHIPRAFQIRFLGFKGMLTVCPDKIMNGNQIILRESMK 291

Query: 647 KFQSH--HTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVD 703
           KF+ +     LEI           +NRQII LLS+L V DE+F + Q   L++ N+   D
Sbjct: 292 KFEGNPLFNKLEIVEGLNESDTANINRQIIILLSSLQVKDEVFLNAQKKALAR-NKCRND 350

Query: 704 SDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA 763
            +                                          A++   +EK + F+  
Sbjct: 351 EEF----------------------------------------RARIKNAKEKTKFFMKD 370

Query: 764 GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCL 823
                G LDE   L+  Q  +           +K+G      KK       V++ +NP L
Sbjct: 371 SVIAKGILDETKQLKDNQVIV----------ITKNGRMVPGGKK-------VIVFRNPGL 413

Query: 824 HPGDIRILEAVDHPELHHLY----------------DCLVFPQKGDRPHTNEASGSDL-- 865
           HP D+RI E V  P+ +  +                DC      G+  + +  S S+L  
Sbjct: 414 HPRDVRIFETVSIPDYYQKWFGHEVDLKGSVIIFAADCQQHNIPGELGNFHLFSISNLQF 473

Query: 866 -DGDLYFVTWDENLIPPSK--KSW 886
            DGD +F +W+  +IP ++  +SW
Sbjct: 474 KDGDRFFTSWNTEIIPQAQYIQSW 497


>gi|389627942|ref|XP_003711624.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
 gi|351643956|gb|EHA51817.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
          Length = 1261

 Score =  103 bits (258), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 204/480 (42%), Gaps = 64/480 (13%)

Query: 549  KCAARMGQCFSSTYATVEVPPTEVDPELPDIKR-NGYVFSDGIGKITPDLAMEVAQKLKL 607
            K  +R+    S T+ TV   P E+  E  D+    G V +DGIG ++  +A EV Q L  
Sbjct: 542  KLFSRIQLGLSRTHPTVVFAPLEIHAEEHDLMSPAGNVMNDGIGLMSRSVAREVQQIL-- 599

Query: 608  DVNPPPCAYQIRYAGCKGVVACWP-AKGDGIRMSLRESMNKFQ-----SHHTTLEICSWT 661
             +   PCA Q R    KG+    P  + D   +    S  K+      SHH TLEI +  
Sbjct: 600  GIQDLPCAVQGRLGSAKGMWIIDPFDQSDDRWIKTYPSQRKWNCTSADSHHRTLEIKTHA 659

Query: 662  R-FQPGFLNRQIITLLSTLN-----VPDEMFWSMQDSMLSKLNQMLVD------------ 703
            +  +   LN Q + +L   +     + D +   ++ S+ ++L  + V             
Sbjct: 660  KPLRSASLNLQFLPVLHDRSKHKHGMRDSIGELLRTSLRTELESVQVALRSPQQFLQWVH 719

Query: 704  ---------SDVAFEV--LTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWG 752
                      + +FEV  L        +  A M+ AGFNP+ + +L+ +   I+  +   
Sbjct: 720  ENSNHRQGLGNTSFEVPRLGGLPERDEDVMAEMVRAGFNPRGQKYLQDIAWNIQKQKCET 779

Query: 753  LREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIK 812
            LREK  I V    + +  +D  GV+  G+  +  SE F  + FS  G+   + +      
Sbjct: 780  LREKLNIKVGMSTYALMVVDFWGVVPEGEVHLCFSEKFTCDGFS--GTLLNDQE------ 831

Query: 813  GFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFV 872
              V++A++P  +  DI+ ++AV  PEL  L D +VF + G+    +  SG D DGD+ +V
Sbjct: 832  --VLVARSPAHYVSDIQKVKAVFRPELKDLKDVIVFSRNGNVALADRLSGGDYDGDIAWV 889

Query: 873  TWDENLIPPSKKSWPPMEYNAAEAKTLTR-PVDQRDII----------EFFAKHM---VN 918
             WD  ++   + +  P   +      L++ P    D++          E  A+     + 
Sbjct: 890  CWDSKIVDNFQNAAVPDSPDLFRQGYLSKIPGTMSDLVRELGLEKGTGEMIARGFEFNMR 949

Query: 919  ENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPA--HLKPKLYP 976
            +N   IC        +      D   +LL+ L +  VD  K G +    +   L+ +L+P
Sbjct: 950  QNFLGICTNFKERLCYKRKNVNDSVAVLLSTLVSNLVDQGKQGIVFDAGSWRRLQMELHP 1009


>gi|440464051|gb|ELQ33552.1| RNA-dependent RNA polymerase [Magnaporthe oryzae Y34]
 gi|440477644|gb|ELQ58660.1| RNA-dependent RNA polymerase [Magnaporthe oryzae P131]
          Length = 1738

 Score =  103 bits (258), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 163/362 (45%), Gaps = 48/362 (13%)

Query: 554 MGQCFSSTYATVEVPPTEVDPELPDIKR-NGYVFSDGIGKITPDLAMEVAQKLKLDVNPP 612
           +G   S T+ TV   P E+  E  D+    G V +DGIG ++  +A EV Q L   +   
Sbjct: 552 LGSGLSRTHPTVVFAPLEIHAEEHDLMSPAGNVMNDGIGLMSRSVAREVQQIL--GIQDL 609

Query: 613 PCAYQIRYAGCKGVVACWP-AKGDGIRMSLRESMNKFQ-----SHHTTLEICSWTR-FQP 665
           PCA Q R    KG+    P  + D   +    S  K+      SHH TLEI +  +  + 
Sbjct: 610 PCAVQGRLGSAKGMWIIDPFDQSDDRWIKTYPSQRKWNCTSADSHHRTLEIKTHAKPLRS 669

Query: 666 GFLNRQIITLLSTLN-----VPDEMFWSMQDSMLSKLNQMLVD----------------- 703
             LN Q + +L   +     + D +   ++ S+ ++L  + V                  
Sbjct: 670 ASLNLQFLPVLHDRSKHKHGMRDSIGELLRTSLRTELESVQVALRSPQQFLQWVHENSNH 729

Query: 704 ----SDVAFEV--LTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKA 757
                + +FEV  L        +  A M+ AGFNP+ + +L+ +   I+  +   LREK 
Sbjct: 730 RQGLGNTSFEVPRLGGLPERDEDVMAEMVRAGFNPRGQKYLQDIAWNIQKQKCETLREKL 789

Query: 758 RIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVI 817
            I V    + +  +D  GV+  G+  +  SE F  + FS  G+   + +        V++
Sbjct: 790 NIKVGMSTYALMVVDFWGVVPEGEVHLCFSEKFTCDGFS--GTLLNDQE--------VLV 839

Query: 818 AKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEN 877
           A++P  +  DI+ ++AV  PEL  L D +VF + G+    +  SG D DGD+ +V WD  
Sbjct: 840 ARSPAHYVSDIQKVKAVFRPELKDLKDVIVFSRNGNVALADRLSGGDYDGDIAWVCWDSK 899

Query: 878 LI 879
           ++
Sbjct: 900 IV 901


>gi|156374435|ref|XP_001629812.1| predicted protein [Nematostella vectensis]
 gi|156216821|gb|EDO37749.1| predicted protein [Nematostella vectensis]
          Length = 110

 Score =  103 bits (257), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 72/123 (58%), Gaps = 14/123 (11%)

Query: 754 REKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKG 813
           + + R+ VP  R + G  D   VL  G+C+ + S       F +    F    K+ VI+ 
Sbjct: 1   KTRLRVLVPKSRMVFGVCDPYEVLRQGECYFRPS------IFDEDEGDFQAANKVAVIR- 53

Query: 814 FVVIAKNPCLHPGDIRILEAV-DHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFV 872
                 NPC HPGD+R+L+ V + PEL+HL DC+VFP +G RPH  E SG+D+DGD +FV
Sbjct: 54  ------NPCYHPGDVRVLKLVRNKPELNHLRDCIVFPVRGRRPHALECSGADMDGDKFFV 107

Query: 873 TWD 875
           TWD
Sbjct: 108 TWD 110


>gi|451845380|gb|EMD58693.1| hypothetical protein COCSADRAFT_194603 [Cochliobolus sativus
           ND90Pr]
          Length = 1215

 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 151/345 (43%), Gaps = 50/345 (14%)

Query: 574 PELPDIKRNGYVFSDGIGKITPDLAMEV---AQKLKLDVNPPPCAYQIRYAGCKGVVACW 630
           P  PD    G V  DG   ++   A ++     K     +P P A+Q R  G KG+    
Sbjct: 526 PPFPD----GTVMDDGCCVMSVGAAKKIWDLYTKATGVTDPLPSAFQGRIGGAKGIWVIS 581

Query: 631 PAK----GDGIR--MSLRESMNKFQS------HHTTLEICSWTRF-QPGFLNRQIITLLS 677
             K     D +   + + ES  KFQ       +H T E+ +++    P  L+   I +L+
Sbjct: 582 AEKFTKDTDHLEPWIEINESQWKFQPPNDQSPYHRTFEVSNYSSTPSPSELHSSFIPILA 641

Query: 678 TLNVPDE-----MFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ----------GNTA 722
              V  E     M  S++   ++ LN +L D+    E +    A            G  A
Sbjct: 642 DRGVTKEAISDLMLDSLEKERINLLN-VLQDATKVHEWVYRNGANTKLREETHGRVGQPA 700

Query: 723 AI------MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGV 776
           ++      +L +GF+P   P+L   L     ++      K R+ +P   +L G  D LGV
Sbjct: 701 SLKEKALNLLESGFDPLKFPYLAQNLESFIMSRQIFQEAKLRVLLPKSTFLYGVADPLGV 760

Query: 777 LEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDH 836
           L  G+  I  S PF+    ++   R+++ + L+V+     +A+ P     DI+ +  V H
Sbjct: 761 LNPGEIQILFSWPFVDETTNE---RYSDLRDLEVL-----VARQPACRRSDIQKVRTVIH 812

Query: 837 PELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
           PEL HL D  VF  KG  P   +  G D DGD++++ W++ L+ P
Sbjct: 813 PELSHLVDVAVFSSKGPFPLAGKLQGGDYDGDIFWICWEDTLVQP 857


>gi|225445110|ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
           vinifera]
          Length = 943

 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 190/458 (41%), Gaps = 70/458 (15%)

Query: 585 VFSDGIGKITPDLAMEVAQKL---------KLDV--NPPPCAYQIRY--AGC--KGVVAC 629
           + +DG G I+ DLA+     L           DV  +  P   Q R    GC  KG +  
Sbjct: 363 ILTDGTGFISEDLALRCPNNLCRGKYMNNGNSDVCDSRYPLLIQCRLFNNGCAVKGTLLL 422

Query: 630 ---WPAKGDGIRMSL--RESMNKFQSHHT--TLEICSWTRFQP--GFLNRQIITLLSTLN 680
               P +   IR S+   E+  K     T  ++EI + T  QP   +L++ +I LLS   
Sbjct: 423 NRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEI-NGTSNQPRRSYLSKYLIALLSYGG 481

Query: 681 VPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRG 740
           VP+E F ++    L     +      A  V         +    M+ +G  P  EP L  
Sbjct: 482 VPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVTRMILSGI-PIDEPFLHH 540

Query: 741 MLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGS 800
            L+ +   +  GLR   ++ V    +LMG  D  G L+  +  I +           HG 
Sbjct: 541 CLSFMVNEERKGLR-VGKLPVNDCFYLMGTADPTGTLKSDEVCIILD----------HGQ 589

Query: 801 RFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD----CLVFPQKGDRPH 856
                     ++G V++ K+P LH GDI +L A     L          + FP KG R  
Sbjct: 590 ----------VQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSL 639

Query: 857 TNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVD------QRDIIE 910
            +E + SD DGD+Y+V+ ++ L+   + S P M   +       RP D      + ++ +
Sbjct: 640 ADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQ 699

Query: 911 FF--AKHMVNENLGTICNAHVVHADH---------SEYGALDENCILLAELAATAVDFPK 959
            F   +   +  +G   +  +V  D           E   L    + L ++   A+D PK
Sbjct: 700 LFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPK 759

Query: 960 TGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLY 997
           +G  V +   LK + +P FMG+E+  SY S  ILG++Y
Sbjct: 760 SGMKVNVSKELKAEKFPHFMGRES--SYHSTSILGQIY 795


>gi|333440980|gb|AEF32765.1| RdRP2 [Ascaris suum]
          Length = 384

 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 141/345 (40%), Gaps = 69/345 (20%)

Query: 380 VFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRK 439
            F+  +R  L +   LK  E+Y   +Q+D    VR++V+TPT+   + PE+ + NRVLR 
Sbjct: 62  TFECIRRDLLAETDQLK--EIY-AREQLDGYRRVRKVVLTPTRMLLVVPELLMGNRVLRT 118

Query: 440 YKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGF 499
           + +  DR LRV F D+    M  N     + P +   T             V + L  G 
Sbjct: 119 HDESGDRALRVQFRDDDGTRMKHNT----VGPYLIQTT-------------VHNALVRGV 161

Query: 500 YLCGRKFSFLAFSSSQLRDCSAWFF----------------SEDGKTSVLDIKKWMGRFT 543
           Y+  R F +LA S+SQ+RD   +FF                                   
Sbjct: 162 YIADRHFVYLASSNSQMRDNGCYFFDDGDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 221

Query: 544 DKNIAKCAARMGQCFS-STYATVEVPPTEVDPELP-----DIKRNGYVFSDGIGKITPDL 597
                   ARMGQCF+ +   ++++     +         D     Y FSDG G+++P+ 
Sbjct: 222 XXXXXXLMARMGQCFTQAKECSIKLLHRRYNKTFDIIGGMDSSGEPYTFSDGCGRLSPEF 281

Query: 598 AMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP---------------------AKGDG 636
           A  +A  L L    P C +QIR+ G KGVV+  P                      K + 
Sbjct: 282 AQRIADDLHLGKCVPSC-FQIRFRGIKGVVSVDPWLTERASWATEHNIADNMENYNKKNK 340

Query: 637 IRMSLRESMNKFQ---SHHTTLEICSWTRFQPGFLNRQIITLLST 678
           + M  R S +KF    SH   +EI  ++   P  LNR  I +L T
Sbjct: 341 LYMLFRPSQDKFHAPLSH--KIEIVKYSSPTPVCLNRPYIAILLT 383


>gi|290988454|ref|XP_002676936.1| predicted protein [Naegleria gruberi]
 gi|284090541|gb|EFC44192.1| predicted protein [Naegleria gruberi]
          Length = 1745

 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 143/594 (24%), Positives = 244/594 (41%), Gaps = 127/594 (21%)

Query: 478 LNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF----SEDGKTSVL 533
           L   SQ+ R  + ++S       + G  F  L  ++S +      ++    +++    V 
Sbjct: 381 LERISQEFRAARVLKSYQDSPITIAGYSFHQLCQNTSGMHSYKYTYYCGDLADELPLGVE 440

Query: 534 DIKKWM-------GRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVF 586
           D+K++          +  +N  K   R+    +    T+ +   +V   + D+     +F
Sbjct: 441 DVKEFFIPSHLNPDLYKPENQLKLTVRLSLLNTPISPTINISEYQV---IEDVG----LF 493

Query: 587 SDGIGKITPDLAMEVAQKLKL------------------------DVNPP--------PC 614
           +DG G I+PDLA E+ +K+K                         D +P         P 
Sbjct: 494 TDGCGFISPDLAREIYRKIKQAESREKVHVFENAQYMVDVQMIYQDSDPVEDDMDDNVPS 553

Query: 615 AYQIRYAGCKGVVACWP-AKGDGIRMSLRESMNKFQ-----------SHHTTLEICSWTR 662
           A+QIR+ G KG++   P  KG    + LRESM KF               + + +  ++ 
Sbjct: 554 AFQIRFRGAKGMLLQNPNVKG----IVLRESMVKFNVDLDEDLDEEDESLSNIHVVGYS- 608

Query: 663 FQP---GFLNRQIITLLSTLNVPDEMFWSMQDSMLSK-LNQML-VDSDVAFEVLTAACAE 717
            +P    F N  I+ ++S      E F  +  +M    +N +L   S+     L     +
Sbjct: 609 -EPSNFAFANSTILYMMSGCVDGGEKFEGIIMNMWKDYVNDILKTYSNEDTSQLMKKYFK 667

Query: 718 QGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVL 777
           +G+  A+ +   F    +  L  +    R  QL  L+    + +   R + G  D L VL
Sbjct: 668 EGDFHALNI---FGLTKDVALAFLAGPFRT-QLLNLK----LPIQNARRVYGVCDPLEVL 719

Query: 778 EGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP 837
           E  + F+++                 E   L+ ++G + I K PCLH GD+R+L+A    
Sbjct: 720 EPDEVFVRIR---------------MEDGTLKTLEGTIAITKEPCLHRGDLRLLKAKKIE 764

Query: 838 ELHHLYDCLVFPQKGD-RPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEA 896
            L +L + +VFP KG+ RP  N  +GSDLDGD Y V WDE L+    + + P  ++  E 
Sbjct: 765 SLEYLSEVIVFPIKGEKRPIPNMITGSDLDGDKYLVIWDEPLVSSFVQQFEPGNFD-EEI 823

Query: 897 KTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYG---ALDEN---CILLAEL 950
           +   R          F   +  + +G      + H+    YG   +  EN      L+++
Sbjct: 824 EGEKRN---------FEPDVFKDWIG------LRHSYVDSYGYEWSKGENWKTMQRLSDI 868

Query: 951 AATAVDFPKTGKIVTMPAHLK------PKLYPDFMGKEAYQSYK-SNKILGRLY 997
              AVD PK GK     A  K      PK YP F   +  ++ + S  ++G++Y
Sbjct: 869 VNMAVDAPKKGKTFKAGAMEKDIVRNFPK-YPHFHNSKTKEAVRVSTSVVGKMY 921


>gi|251765119|sp|Q5QMN5.2|RDR3_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 3; Short=OsRDR3
          Length = 1153

 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 179/402 (44%), Gaps = 52/402 (12%)

Query: 642  RESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
            ++S++  QS ++   + +  R +    +R +ITLL    VP+E F  +  S +       
Sbjct: 652  KKSLSGVQSVNSFEIVSTSNRPRRTLTSRFLITLLCYGGVPEEYFLELLQSAIEGAENAC 711

Query: 702  VDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761
             D + A  +  +    + + +A M+ +G  P  E +L+  L  +   +  G+++  +I +
Sbjct: 712  YDYEDALRIAFSYADMEDSMSARMILSGI-PLEESYLQHRLDFMAQQERKGIKQ-GKIPI 769

Query: 762  PAGRWLMGCLDELGVLEGGQ-CFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKN 820
                +LM   D  G L   + C I  +  F G+                     V++ K+
Sbjct: 770  DECYYLMDTTDPTGTLRPNEVCVILENGQFSGD---------------------VLVYKH 808

Query: 821  PCLHPGDIRILEAVDHPELHHLYD-----CLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 875
            P LH GDI +L+A    +L   Y       ++FP  G R   +E + SD DGD+Y+V+ +
Sbjct: 809  PGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIYWVSKN 868

Query: 876  ENLIPPSKKSWPPMEYNAAEAKTLTRPVD------QRDIIEFFAKHMVNEN--LGTICNA 927
              L+   K S P ++    +     +P D      +R +   F K     +  LGT  ++
Sbjct: 869  PKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPSFALGTAADS 928

Query: 928  HVVHADHSEYGALDE--------NCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFM 979
             + + D     +LDE          + L +L   A+D PKTG  V +P+ L  K YP FM
Sbjct: 929  WLAYMDRLLTDSLDEIEKKLIEEKMLKLVDLYYLALDAPKTGNKVNIPSDLMVKQYPHFM 988

Query: 980  GKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDI 1021
            G+    SY S+ ILG++Y ++     ED+      ++ P+ +
Sbjct: 989  GRSF--SYHSSSILGQIYDKA-----EDVESLRSCNVQPIGV 1023


>gi|302411624|ref|XP_003003645.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
 gi|261357550|gb|EEY19978.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
          Length = 1283

 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 150/640 (23%), Positives = 249/640 (38%), Gaps = 111/640 (17%)

Query: 418  ITPTKAYCLPP-EVELSNRVLRKYKDLADRFLRVTF-------MDEGLQTMNANVLSYFI 469
            I P  +  L P +++L +R+ R++   +DRFL + F       +   L  +N       I
Sbjct: 460  IGPLFSVSLQPLKLDLGHRLGRRFG--SDRFLEMNFPSFTATGVPPQLTRLNG-ATDTII 516

Query: 470  APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGK 529
              +  +    +  Q    F R    ++ G       +   A + ++L+ C    F+E G 
Sbjct: 517  KWLTTEKHFLAGRQWAAFFTRDVDKVTAGLAQGLTAWEGKATTKTRLKQCRVCCFAEGGH 576

Query: 530  T--------SVLDIKKWMGR----FTD---------KNIAKCAARMGQCFS---STYATV 565
            +        +  D K   GR     TD          N A+ + ++    +    TY T+
Sbjct: 577  SFSPSNRIPAKADAKNVNGRTKMKLTDMLEWAIAIRANAAQPSLKLFSRLALSNRTYPTI 636

Query: 566  EVPPTEVDPELPDI-KRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCK 624
               P ++     DI  ++G V +DG+ +++P  A  +A+ L L   P   AYQ R+   K
Sbjct: 637  VFEPGQIIHHAEDICSKSGKVMNDGVAEMSPKAAKVIAEYLGLADTP--SAYQGRFGSAK 694

Query: 625  GV--VACWPAKGDGIRMSLRESMNKFQ-----SHHTTLEICSWTR-FQPGFLNRQIITLL 676
            GV  V   P   D   +    S  K++       H T E+ +  R  +   LN Q I +L
Sbjct: 695  GVWIVGTDPDNKDDFEIETYPSQRKWECDFWDEDHRTFEVKTEARPLRAANLNMQFIPVL 754

Query: 677  ----------------------------------STLNVPDEMF-WSMQDSMLSKLNQML 701
                                              S++N P +   W  ++      +  +
Sbjct: 755  VNGDVKRGTDKHRMRNAIAGCLRTTLKEELARQRSSMNDPVQFRQWIHENFFQGYRSDRV 814

Query: 702  VDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761
             D ++ F  L      +     ++L AGF P+    LR +   +   +   L+ K  I V
Sbjct: 815  RDQNIRF--LAGLPDNEAERVNMLLDAGFRPKKLSFLREVSYKMAFRKCELLKSKMNIKV 872

Query: 762  PAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGF-VVIAKN 820
                +    +D  GVLE G+  +  S  F+         +F++T    ++ G  V++A+ 
Sbjct: 873  GCSTYAKMVVDFKGVLEEGEIHLGFSTKFM-----DPDGQFSDT----LLHGMDVLVARA 923

Query: 821  PCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD----- 875
            P   P DI+ + AV  PEL HL D +VF  KGD P  +  SG D DGD  +V WD     
Sbjct: 924  PAHFPSDIQRVRAVFRPELRHLKDVIVFSIKGDSPLADLLSGGDYDGDQAWVCWDPAIVN 983

Query: 876  --ENLIPPSKKSWPPMEYNAAEAKTLTRPVDQ------RDIIEF----FAKHMVNENLGT 923
              +N+  P       + Y      T    V        R + EF    F  +M  + LG 
Sbjct: 984  SFQNVAYPVVPDLFALGYLEKRKGTFQDLVQNNSSNMDRAVAEFMYESFTFNMKEQFLG- 1042

Query: 924  ICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKI 963
            IC A+     +   G  + + ++L+ L    VD  K G +
Sbjct: 1043 ICTAYKERLCYGYNGIDNNDAVVLSHLVGNLVDQAKQGIV 1082


>gi|452002294|gb|EMD94752.1| hypothetical protein COCHEDRAFT_1201293 [Cochliobolus heterostrophus
            C5]
          Length = 1666

 Score =  100 bits (248), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 172/415 (41%), Gaps = 76/415 (18%)

Query: 609  VNPPPCAYQIRYAGCKGVVACWPAKGDGIR---------MSLRESMNKFQS------HHT 653
             +P P A+Q R  G KG+   W    +            + + +S  KF+       +H 
Sbjct: 1011 TDPLPSAFQGRIGGAKGI---WVINAERFTKEPTHLEPWIMINDSQWKFEPPNDQSPYHR 1067

Query: 654  TLEICSWTRF-QPGFLNRQIITLLSTLNVPDE-----MFWSMQDSMLSKLNQMLVDSDVA 707
            T E+ +++    P  L+   I +L+   VP E     MF S++   ++ LN +L D+   
Sbjct: 1068 TFEVLNYSSTPSPSELHSLFIPILADRGVPKEAISDLMFDSLEKERMNLLN-VLQDTTKV 1126

Query: 708  FEVLTAACAEQ----------GNTAAI------MLSAGFNPQTEPHLRGMLTCIRAAQLW 751
             E +    A            G  A++      +L +GF+P   P+L   L     ++  
Sbjct: 1127 HEWVYRNGANTKLREETPGRAGQPASLEEKVLNLLESGFDPLKFPYLAQNLESFILSRQI 1186

Query: 752  GLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVI 811
                K R+ +P   +L G  D  GVL  G+  +  S PFL    ++   R+ E + L V+
Sbjct: 1187 FQEAKLRVLLPKSTFLYGVADPKGVLNPGEIQVLFSWPFLDETTNE---RYLELRDLNVL 1243

Query: 812  KGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYF 871
                 +A++P     DI+ +  V HPEL HL D  VF  KG  P   +  G D DGD+++
Sbjct: 1244 -----VARHPACRRSDIQKVRTVIHPELSHLVDVAVFSSKGSFPLAGKLQGGDYDGDIFW 1298

Query: 872  VTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVH 931
            + W+  L+ P   +  P++        + +  ++        KH+V+       +A +  
Sbjct: 1299 ICWENTLVQPFFNAPAPVQPPEPSLYGIEKRTEK-------LKHIVDVKRPDKVDAFLKR 1351

Query: 932  A----DHS----------EYGALDENCI------LLAELAATAVDFPKTGKIVTM 966
            A    DHS          E  A  ENC+       L ++    VD  K G I+T 
Sbjct: 1352 AFEFRDHSSLLGQATILAESQAYSENCVHSGTLEKLYDVHDLLVDASKQGYILTQ 1406


>gi|222617920|gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japonica Group]
          Length = 1243

 Score =  100 bits (248), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 179/402 (44%), Gaps = 52/402 (12%)

Query: 642  RESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
            ++S++  QS ++   + +  R +    +R +ITLL    VP+E F  +  S +       
Sbjct: 733  KKSLSGVQSVNSFEIVSTSNRPRRTLTSRFLITLLCYGGVPEEYFLELLQSAIEGAENAC 792

Query: 702  VDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761
             D + A  +  +    + + +A M+ +G  P  E +L+  L  +   +  G+++  +I +
Sbjct: 793  YDYEDALRIAFSYADMEDSMSARMILSGI-PLEESYLQHRLDFMAQQERKGIKQ-GKIPI 850

Query: 762  PAGRWLMGCLDELGVLEGGQ-CFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKN 820
                +LM   D  G L   + C I  +  F G+                     V++ K+
Sbjct: 851  DECYYLMDTTDPTGTLRPNEVCVILENGQFSGD---------------------VLVYKH 889

Query: 821  PCLHPGDIRILEAVDHPELHHLYD-----CLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 875
            P LH GDI +L+A    +L   Y       ++FP  G R   +E + SD DGD+Y+V+ +
Sbjct: 890  PGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIYWVSKN 949

Query: 876  ENLIPPSKKSWPPMEYNAAEAKTLTRPVD------QRDIIEFFAKHMVNEN--LGTICNA 927
              L+   K S P ++    +     +P D      +R +   F K     +  LGT  ++
Sbjct: 950  PKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPSFALGTAADS 1009

Query: 928  HVVHADHSEYGALDE--------NCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFM 979
             + + D     +LDE          + L +L   A+D PKTG  V +P+ L  K YP FM
Sbjct: 1010 WLAYMDRLLTDSLDEIEKKLIEEKMLKLVDLYYLALDAPKTGNKVNIPSDLMVKQYPHFM 1069

Query: 980  GKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDI 1021
            G+    SY S+ ILG++Y ++     ED+      ++ P+ +
Sbjct: 1070 GRSF--SYHSSSILGQIYDKA-----EDVESLRSCNVQPIGV 1104


>gi|222617921|gb|EEE54053.1| hypothetical protein OsJ_00746 [Oryza sativa Japonica Group]
          Length = 1148

 Score = 99.8 bits (247), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 116/474 (24%), Positives = 193/474 (40%), Gaps = 81/474 (17%)

Query: 585  VFSDGIGKITPDLAMEVA---QKLKLDVNPPPCAYQIR--YAG--CKGVVAC---WPAKG 634
            + +DG G I+ DLA +      K KL + P P   Q+R  Y G   KG V      P + 
Sbjct: 546  IHTDGTGLISEDLAQKCTYSNSKGKL-LEPQPLLIQLRLFYNGSAVKGTVLVDKRLPPRT 604

Query: 635  DGIRMSL--------------------------RESMNKFQSHHTTLEICSWTRFQPGFL 668
              IR S+                          ++S++  QS ++   + +  R    F 
Sbjct: 605  IHIRPSMLKIKTYPELSGVQSVNSLDIVSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFT 664

Query: 669  NRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSA 728
            +  +I LL    VP+E F  +  + + + +    D   A  +       + +  A M+ +
Sbjct: 665  SNNLIALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNIAFNYADMEDSMPARMILS 724

Query: 729  GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSE 788
            G  P  E +L+  L  +   +  G++   +I +    +LMG  D  G L   +  + +  
Sbjct: 725  GI-PLEESYLQSRLDFLSLLERKGIK-NGKIPIDDCYYLMGTADPTGKLGPNEVCVILD- 781

Query: 789  PFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD---- 844
                     +G           + G V++ K P LHPGDI +L+A    ++  +      
Sbjct: 782  ---------YGQ----------VSGDVLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKH 822

Query: 845  CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI---PPSKKSWPPMEYNAAEAK---- 897
             ++FP  G R   +E + SD DGD+Y+V+ +  L+    PSK   P +  N  + K    
Sbjct: 823  AILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPED 882

Query: 898  ----TLTRPVDQRDIIEFFAKHMVNENLGT-----ICNAHVVHADHSEYGALDENCILLA 948
                 L R +    +   FA         T     +     V  D SE   +++  + L 
Sbjct: 883  FNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDESEKKLIEKKMLKLV 942

Query: 949  ELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKD 1002
            +L   A+D PK G  V +P  L  K YP FM +    SY S+ ILG++Y ++ D
Sbjct: 943  DLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDRSP--SYHSSSILGKIYDKAGD 994


>gi|156390354|ref|XP_001635236.1| predicted protein [Nematostella vectensis]
 gi|156222327|gb|EDO43173.1| predicted protein [Nematostella vectensis]
          Length = 127

 Score = 99.8 bits (247), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 15/122 (12%)

Query: 756 KARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV-IKGF 814
           K RI VP  R + G  D  G LE GQC               H + + E +  +  +   
Sbjct: 19  KLRILVPNSRVVFGVCDPFGELEYGQCVF-------------HPTLYDEVRIAEYQVATE 65

Query: 815 VVIAKNPCLHPGDIRILEAVDH-PELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVT 873
           V++ +NPC +PGDIR+L+ V + P+  +L DC+VFP KG RPH +E+SG DLDGD +FV+
Sbjct: 66  VMVVRNPCYYPGDIRVLKLVKNLPQYAYLNDCIVFPTKGSRPHADESSGGDLDGDEFFVS 125

Query: 874 WD 875
           WD
Sbjct: 126 WD 127


>gi|302893516|ref|XP_003045639.1| hypothetical protein NECHADRAFT_39599 [Nectria haematococca mpVI
            77-13-4]
 gi|256726565|gb|EEU39926.1| hypothetical protein NECHADRAFT_39599 [Nectria haematococca mpVI
            77-13-4]
          Length = 1363

 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 145/654 (22%), Positives = 238/654 (36%), Gaps = 116/654 (17%)

Query: 427  PPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTR 486
            PP +EL +R+ R++   ADRF+ +                   +P  RD        +  
Sbjct: 509  PPRLELGHRLARRFG--ADRFMEIVM----------------PSPTTRDAPDVVKQDEGG 550

Query: 487  VFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDG------------------ 528
              K +R +     Y  G K       S  +     +FF+ DG                  
Sbjct: 551  PNKVIRWLTDSSHYFVGLKDPNPPHKSMTIMQERVYFFATDGINFRLPDHQQPPQEEATS 610

Query: 529  -----KTSVLDIKKW---MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK 580
                 K    D+  W   + R   + + K  +R+    S T  TV + P +   +   + 
Sbjct: 611  PGNRTKMRRCDLLNWAIGVERNCRQPVPKLFSRLALNLSKTVPTVVLAPNQFRHQDTMLG 670

Query: 581  RNGYV----------FSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKG---VV 627
             + Y+            DGIG+++  LA +VA  L L     PCA+Q R    KG   V 
Sbjct: 671  FHKYMREEDKIEQQDMGDGIGRMSRSLARKVATHLGL--LEAPCAFQARIGSAKGMWIVD 728

Query: 628  ACWPAKGDGIRMSLRESMNKFQS-----HHTTLEICSWTR-FQPGFLNRQIITLLST--- 678
                   D   +    S  K++      HH T E+  W+R  +P  LN+Q I +L     
Sbjct: 729  VEDDGLDDDDWIETYPSQRKWECDYLDVHHRTFEVREWSRELRPAALNQQFIPVLEAQAP 788

Query: 679  -------------LNVPDEMFWSMQDSMLSKLN------QMLVDSDVAFEVLTAACAEQG 719
                         +N  DE       +M    N      +    S V          E+ 
Sbjct: 789  RPRLMRDAIAAHLVNGLDEEIGGQMAAMAHPTNLRGWTHRGFDRSSVGHVPFLGGLPERD 848

Query: 720  -NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE 778
             +  + +L AGF      HLR ++  ++  Q   L+ K  I +P   +    +D  G LE
Sbjct: 849  EDVISYLLDAGFEATKCRHLRDLVWSMQKRQADQLKAKMNIKIPRSTYAYMVVDFTGTLE 908

Query: 779  GGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHP 837
             G+  +  S  F            A+ +   ++ G  +++A+ P     DI+ ++AV  P
Sbjct: 909  EGEVQLAFSSKFQ-----------ADGESDTLLDGIDILVARAPAHFVSDIQKVKAVFRP 957

Query: 838  ELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPME------- 890
             L  L D +VF  KG  P  +  SG D DGD  +V WD  ++     +  P+E       
Sbjct: 958  NLKRLKDVIVFSSKGKSPLADLLSGGDYDGDKAWVCWDPKIVSNFSNAAKPVEPDLVKQG 1017

Query: 891  ----YNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGT----ICNAHVVHADHSEYGALDE 942
                 N +    L+  +D       F    ++ ++      IC        + E G   E
Sbjct: 1018 YLRKSNPSFESILSTSMDVDSACADFLHSAISFSMQPSYLGICTVFKEKLCYFERGVNSE 1077

Query: 943  NCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEA-YQSYKSNKILGR 995
              + L+ L +  VD  K G + T   + + K      GK+  Y + +S++   R
Sbjct: 1078 RAVALSTLVSLLVDQAKQGLLFTREDYERLKRDMKMQGKDPEYHNDRSSRYTYR 1131


>gi|115435092|ref|NP_001042304.1| Os01g0198000 [Oryza sativa Japonica Group]
 gi|56201772|dbj|BAD73222.1| RNA-dependent RNA polymerase -like [Oryza sativa Japonica Group]
 gi|56201879|dbj|BAD73329.1| RNA-dependent RNA polymerase -like [Oryza sativa Japonica Group]
 gi|113531835|dbj|BAF04218.1| Os01g0198000 [Oryza sativa Japonica Group]
 gi|215693837|dbj|BAG89036.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 582

 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 164/381 (43%), Gaps = 44/381 (11%)

Query: 642  RESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
            ++S++  QS ++   + +  R    F +  +I LL    VP+E F  +  + + + +   
Sbjct: 72   KKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNAR 131

Query: 702  VDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761
             D   A  +       + +  A M+ +G  P  E +L+  L  +   +  G++   +I +
Sbjct: 132  FDYAGALNIAFNYADMEDSMPARMILSGI-PLEESYLQSRLDFLSLLERKGIKN-GKIPI 189

Query: 762  PAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNP 821
                +LMG  D  G L   +  + +           +G           + G V++ K P
Sbjct: 190  DDCYYLMGTADPTGKLGPNEVCVILD----------YGQ----------VSGDVLVYKYP 229

Query: 822  CLHPGDIRILEAVDHPELHHLYD----CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEN 877
             LHPGDI +L+A    ++  +       ++FP  G R   +E + SD DGD+Y+V+ +  
Sbjct: 230  GLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPK 289

Query: 878  LIPPSKKSWP--------------PMEYNAAE-AKTLTRPVDQRDIIEFFAKHMVNEN-L 921
            L+   K S P              P ++N +E  + L     +      +A+     N L
Sbjct: 290  LLEHFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWL 349

Query: 922  GTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGK 981
              +     V  D SE   +++  + L +L   A+D PK G  V +P  L  K YP FM +
Sbjct: 350  VYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDR 409

Query: 982  EAYQSYKSNKILGRLYRQSKD 1002
                SY S+ ILG++Y ++ D
Sbjct: 410  SP--SYHSSSILGKIYDKAGD 428


>gi|356497593|ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine
           max]
          Length = 953

 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 189/441 (42%), Gaps = 69/441 (15%)

Query: 596 DLAMEVAQKLKLDVNPPPCAYQIRY----AGCKGVVAC---WPAKGDGIRMSL----RES 644
           D++  + +  +L  + PP   Q R        KG +      P +   +R S+    ++ 
Sbjct: 394 DMSNAMGEAEQLSTHEPPLLIQCRLFHMGHAIKGTLLVNRKLPPRTIQVRPSMIKVEKDP 453

Query: 645 MNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDS 704
               QS ++   + +  + + G+L++ +I LLS   VP+E F  +  S +   N +  + 
Sbjct: 454 SVHMQSINSLEVVTTSNKPKRGYLSKHLIALLSFGGVPNEFFMDLLRSNMEDANHVYSNK 513

Query: 705 DVAFEVLTAACAEQGN-TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA 763
             A    +  C E+    AA M+  G  P  EP L+  L+     +   LR   ++++P 
Sbjct: 514 RSALRA-SINCGEKDEYNAAEMILCGI-PLDEPFLKHHLSRFAREEKKKLR-GGKLYMPD 570

Query: 764 GRWLMGCLDELGVLEGGQ-CFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPC 822
             +LMG +D  G L+  Q C I  +   +G+                     V++ +NP 
Sbjct: 571 CFYLMGTVDPTGHLKKNQVCIIHENSQIVGD---------------------VLVYRNPG 609

Query: 823 LHPGDIRILEAVDHPELH----HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVT----- 873
           LH GDI  ++A    EL     H    + FP+ G R   +E +G D DGD Y+V+     
Sbjct: 610 LHFGDIHKMDATYVKELESYVGHSKYGIFFPRVGTRSVADEIAGGDFDGDTYWVSNHPQL 669

Query: 874 ---------WDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNEN---- 920
                    W EN +P       P E++  E +     +  +   +      ++EN    
Sbjct: 670 LQYFRKGDPWIENSVPLDSSVKKPSEFSPEELEEELFRLFLKTRFQPSYAMGMSENSWMA 729

Query: 921 ----LGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYP 976
               L T+ N      + +E   + EN + L ++   A+D PK+G+ V +P  L  +L+P
Sbjct: 730 LMDRLLTLNNC----TNENEKERVKENMLKLIDIYYEALDAPKSGRKVQVPNDLIAELFP 785

Query: 977 DFMGKEAYQSYKSNKILGRLY 997
            +M K+  +S+ S  ILG +Y
Sbjct: 786 HYMEKD--KSFTSTSILGLIY 804


>gi|402584478|gb|EJW78419.1| hypothetical protein WUBG_10674, partial [Wuchereria bancrofti]
          Length = 355

 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 172/371 (46%), Gaps = 76/371 (20%)

Query: 861  SGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVD-------QRDIIEFFA 913
            +GSDLDGD Y V WD+ ++    +   PM+++      L RP D        R++  F+ 
Sbjct: 2    AGSDLDGDEYSVIWDDQMLFSYNEE--PMDFSK-----LVRPPDILKEDEVVREMRRFYV 54

Query: 914  KHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGK----IVT---- 965
            ++++ +++G I NA +V++D   +G   + C+ +AE  + +VDFPKTG+    +V     
Sbjct: 55   EYVMQDSIGIIANAFLVNSD--TFGIASDVCMSIAEKHSQSVDFPKTGQPPKPLVKEWSS 112

Query: 966  -----MPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVS------SEV 1014
                 M    +P+ +PDFM K    SY S +++G+L+R+ +   D+ ++++      SEV
Sbjct: 113  RPDGKMIPPERPERWPDFMCKTHEPSYVSTRLVGQLFRRIR-LIDDVLTITSTHKAQSEV 171

Query: 1015 DINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMP 1074
             ++P+       LE      +  DA     +Y   +  L++ Y +  E +L +G    + 
Sbjct: 172  KVDPL-------LEYIGWESYENDAVLNLTAYSAHIRALMDNYGIEDEYQLYSGCFCKIR 224

Query: 1075 KYNSRKQGELKERLKHSYSALRK--------------EFRQVFEKMDSDCELLSEDEKNA 1120
               S + G+   +   S+   RK              EF       + D +L ++D    
Sbjct: 225  NRISDRDGDDMSQFNTSFIIERKLTNIFMCFRCNFFAEFGDFMFCTEQDDDLRNKDVIER 284

Query: 1121 LF--------ERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKI 1172
             +        +RKASA+Y V Y     +K++        +   LLSF WIA D LA IK 
Sbjct: 285  RYCKYPTVEMKRKASAYYIVCY-----RKAM------KEKGERLLSFPWIAWDILADIKK 333

Query: 1173 RCREMANIDTS 1183
                + + +TS
Sbjct: 334  ENTMLTSQNTS 344


>gi|383127813|gb|AFG44556.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
 gi|383127815|gb|AFG44557.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
 gi|383127817|gb|AFG44558.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
 gi|383127819|gb|AFG44559.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
 gi|383127821|gb|AFG44560.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
 gi|383127823|gb|AFG44561.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
 gi|383127825|gb|AFG44562.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
          Length = 114

 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/116 (46%), Positives = 75/116 (64%), Gaps = 5/116 (4%)

Query: 1082 GELKERLKHSYSALRKEFRQVFEKM-DSDCELLSEDEKNALFERKASAWYQVTYHPEWVK 1140
            GE+KERL+H+Y ALRKEFR VFE   DS+     E  K + +E KASAWY V YHP WV+
Sbjct: 1    GEIKERLQHAYKALRKEFRLVFEGTKDSEN---PEPRKQSDYEAKASAWYHVAYHPTWVQ 57

Query: 1141 KSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADR 1196
            K+++L E +   S  LLSF WI+ DYLA+IK++ +   ++D S  V     ++  +
Sbjct: 58   KTMELIEPNGYHSAPLLSFPWISVDYLAQIKLQ-KLCPDVDYSSTVRSFTSFLVGK 112


>gi|218187687|gb|EEC70114.1| hypothetical protein OsI_00773 [Oryza sativa Indica Group]
          Length = 1172

 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 116/474 (24%), Positives = 193/474 (40%), Gaps = 81/474 (17%)

Query: 585  VFSDGIGKITPDLAMEVA---QKLKLDVNPPPCAYQIR--YAG--CKGVVAC---WPAKG 634
            + +DG G I+ DLA +      K KL + P P   Q+R  Y G   KG V      P + 
Sbjct: 557  IHTDGTGLISEDLAQKCTYSNSKGKL-LEPQPLLIQLRLFYNGSAVKGTVLVDKRLPPRT 615

Query: 635  DGIRMSL--------------------------RESMNKFQSHHTTLEICSWTRFQPGFL 668
              IR S+                          ++S++  QS ++   + +  R    F 
Sbjct: 616  IHIRPSMLKIKTYPELSGVQSVNSLDIVSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFT 675

Query: 669  NRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSA 728
            +  +I LL    VP+E F  +  + + + +    D   A  +       + +  A M+ +
Sbjct: 676  SNNLIALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNIAFNYADMEDSMPARMILS 735

Query: 729  GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSE 788
            G  P  E +L+  L  +   +  G++   +I +    +LMG  D  G L   +  + +  
Sbjct: 736  GI-PLEESYLQSRLDFLSLLERKGIK-NGKIPIDDCYYLMGTADPTGKLGPNEVCVILD- 792

Query: 789  PFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD---- 844
                     +G           + G V++ K P LHPGDI +L+A    ++  +      
Sbjct: 793  ---------YGQ----------VSGDVLVYKYPGLHPGDIHVLKATYSSDIGKVVGNSKH 833

Query: 845  CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI---PPSKKSWPPMEYNAAEAK---- 897
             ++FP  G R   +E + SD DGD+Y+V+ +  L+    PSK   P +  N  + K    
Sbjct: 834  AILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPED 893

Query: 898  ----TLTRPVDQRDIIEFFAKHMVNENLGT-----ICNAHVVHADHSEYGALDENCILLA 948
                 L R +    +   FA         T     +     V  D SE   +++  + L 
Sbjct: 894  FNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDESEKKLIEKKMLKLV 953

Query: 949  ELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKD 1002
            +L   A+D PK G  V +P  L  K YP FM +    SY S+ ILG++Y ++ D
Sbjct: 954  DLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDRSP--SYHSSSILGKIYDKAGD 1005


>gi|189208947|ref|XP_001940806.1| RNA-directed RNA polymerase 2 [Pyrenophora tritici-repentis
            Pt-1C-BFP]
 gi|187976899|gb|EDU43525.1| RNA-directed RNA polymerase 2 [Pyrenophora tritici-repentis
            Pt-1C-BFP]
          Length = 1436

 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 186/451 (41%), Gaps = 78/451 (17%)

Query: 574  PELPDIKRNGYVFSDGIGKITPDLAM---EVAQKLKLDVNPPPCAYQIRYAGCKGV---- 626
            P  PD    G V  DG   I+   A+   ++ +K      P P  +Q R AG KGV    
Sbjct: 749  PPFPD----GTVMDDGCSIISVGAALIIWQLYKKATGTTGPLPSIFQGRIAGAKGVWIIS 804

Query: 627  VACWPAKGDGIR--MSLRESMNKF---------QSHHTTLEICSWTRF-QPGFLNRQIIT 674
               +    + ++  + +  S  KF           HH T E+ +++    P  L+   I 
Sbjct: 805  AESYTKDPEHLKPWIMINASQWKFNPPEDALLDHEHHRTFELSNYSSSPTPSELHISFIP 864

Query: 675  LLSTLNVPDEMFWS-MQDSM---LSKLNQMLVD------------------SDVAFEVLT 712
            +L    VP  +  S M+DS+    +KL  +L D                  +DV ++   
Sbjct: 865  ILVDRKVPLTVIDSLMKDSLEAERTKLLDLLPDPVKMYDWVHRNGTKTQSGNDVPWQAAM 924

Query: 713  AACAEQGNTAAIMLSAGFNP-QTEPHLRGMLTCIRAAQLWGLRE-KARIFVPAGRWLMGC 770
                E+     ++L +GF+P + +P  + +   I+A Q+  L+E K R+ +    +L G 
Sbjct: 925  PVSLEE--KVKLLLESGFSPAKFQPLAQSLQRFIQAKQI--LQESKLRVPLAKSTFLFGI 980

Query: 771  LDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRI 830
            +D   VLE GQ  +Q S  F  +          + K L +    V++A+ P     DI+ 
Sbjct: 981  VDPFEVLEPGQIQVQFSSSFADDT--------TDEKYLGLRDMEVLVARQPACRRSDIQK 1032

Query: 831  LEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI------PPSKK 884
            +  V  PEL HL D +VFP +G  P   +  G D DGD++++ W+  L+      P   +
Sbjct: 1033 VRTVIRPELSHLVDVVVFPSRGRYPLAGKLQGGDYDGDIFWICWEPQLVLPFLNAPAPVQ 1092

Query: 885  SWPPMEYNAAEAKTLTRPV-DQR---DIIEFFAKHMVNENLGTICNAHVVHADHSEYGAL 940
            S  P  Y   +     R V D R   D+       +   +  ++     V A+   Y   
Sbjct: 1093 SPDPARYEIKKTTAKVRDVIDTRNPGDVDRLLEMAIEARSKSSMLGMVTVFAEKQAY--- 1149

Query: 941  DENCILLAELAA------TAVDFPKTGKIVT 965
             ENCI  A L A        VD PK G  ++
Sbjct: 1150 RENCIHSATLEALYDMHDLLVDAPKQGYFLS 1180


>gi|367029127|ref|XP_003663847.1| hypothetical protein MYCTH_2306054 [Myceliophthora thermophila ATCC
            42464]
 gi|347011117|gb|AEO58602.1| hypothetical protein MYCTH_2306054 [Myceliophthora thermophila ATCC
            42464]
          Length = 1364

 Score = 97.4 bits (241), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 112/473 (23%), Positives = 192/473 (40%), Gaps = 67/473 (14%)

Query: 549  KCAARMGQCFSSTYATVEVPPTEVDPELPDI-KRNGYVFSDGIGKITPDLAMEVAQKLKL 607
            K  +R+    S T  TV   P ++     DI      + +DGIG+++  +A ++   L L
Sbjct: 630  KLFSRIQLGLSKTTPTVTFEPGQIIHRPEDILSPTKKIMNDGIGRMSRSVARKIRDLLGL 689

Query: 608  -DVNPPPCAYQIRYAGCKGV-VACWPAKGDGIRMSLRESMNKF------QSHHTTLEICS 659
             D+   P A Q R    KG+ +      GD   +    S  K+      +  H TLE+  
Sbjct: 690  TDI---PSAVQGRIGSAKGMWLMDVTDHGDADWIETYPSQRKWNCDDADEPFHRTLEVRK 746

Query: 660  -WTRFQPGFLNRQIITLLSTLNVPDE-MFWSMQDSMLSKLNQMLVDSDVAFE-------- 709
              +  +P  LN Q + +L    V  + M  ++ + +L+ L +   D   A +        
Sbjct: 747  VASELKPASLNLQFLPVLEDRAVDKKAMRCAISNRLLNDLAKQFEDQKTALKRPLQFRQW 806

Query: 710  -------------------VLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQL 750
                                L    A++    A+++++GF+P+++ +LR +   ++  + 
Sbjct: 807  VHENSNNNRPERVKHGQVPFLGGLPADKNEILALLMNSGFDPKSQRYLRDLAWELQKQKC 866

Query: 751  WGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
              LR K  I V    ++   +D  GVLE  +  +  S  F         +  A+      
Sbjct: 867  DTLRTKLNIKVGRSAYIYMVVDFWGVLEENEVHVGFSSKFRDELDGVSYTLLADCD---- 922

Query: 811  IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
                V++A++P     DI+ + AV  PELH L D +VF  KGD P  ++ SG D DGD  
Sbjct: 923  ----VLVARSPAHFVSDIQKVRAVFKPELHALKDVIVFSTKGDIPLADKLSGGDYDGDFA 978

Query: 871  FVTWDENLIPPSKKSWPPMEYNAA-----------EAKTLTRPVDQR-------DIIEFF 912
            +V WD  ++   + +  P+E + +           E    T    +R       D+I+  
Sbjct: 979  WVCWDPEIVDNFENAEVPVEPDLSAYLRKDKTTFDELVCRTGKTGRRARHDAVYDMIDKS 1038

Query: 913  AKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT 965
             +  +  N   IC  +     +      DE  +LL+ L    VD  K G I T
Sbjct: 1039 FQFAMQPNYLGICTNYKERLCYYNNSVSDEGAVLLSSLVGKLVDQSKQGIIFT 1091


>gi|296417840|ref|XP_002838558.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634502|emb|CAZ82749.1| unnamed protein product [Tuber melanosporum]
          Length = 1700

 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 144/608 (23%), Positives = 245/608 (40%), Gaps = 95/608 (15%)

Query: 433  SNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS----FSQKTRVF 488
             NR   ++   +DRFL +   D   +  N +     +A  V D  +N      ++K R F
Sbjct: 861  GNRFFNRFG--SDRFLTLRLPDLTSRGQNGSTPGGMVAQRVEDWLVNEEIELANRKWRCF 918

Query: 489  ------KRVRSILSGGFYLCGRKFSFLAFSSSQL-----RDCSA--WFFSEDGK----TS 531
                   R RS+     ++       + F++S +     RD  A   F   D K     S
Sbjct: 919  YAKEGKSRKRSLEDEKAFINETFVQAVLFATSGVGIGDDRDEMARLGFRGLDRKIRREMS 978

Query: 532  VLDIKKW---MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRN-GYVFS 587
            V D+ KW   +    D  + K  +R+   FS+   + +  P++V+  + D+K   G V +
Sbjct: 979  VEDLLKWHIPLEGNEDVTVPKFWSRISLGFSTAVPSFKFEPSQVEI-VRDMKSTTGEVMN 1037

Query: 588  DGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPA---KGDGIRMSLRES 644
            DG   ++P +  E+  +  LD++  P A Q R  G KGV    P+     D I + + +S
Sbjct: 1038 DGCSVVSPKVMQEI--RRILDLHETPTAVQARLGGAKGVWMIDPSIDWSSDEIFIKVTDS 1095

Query: 645  MNKFQSH-------HTTLEICSWTRF-QPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSK 696
              K+  +         TL+I   +   +P  +N Q+I +L    VP +    + +  L +
Sbjct: 1096 QLKYSGYADDQDWARMTLDILHISHEPRPATINIQLIPILENRGVPFQALKELTEEHLEE 1155

Query: 697  LNQ---MLVDSDV--------------------AFEVLTAACAEQGNTAAIMLSAGFNPQ 733
                   ++D  V                      +V  +  + +   A ++L +GF  +
Sbjct: 1156 DLDELFQVIDKPVELRKWIYNRGSVGRARISFNGIQVTGSMPSTKHEMAILLLESGFLVR 1215

Query: 734  TEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGN 793
            +   L   +  +       L+EK  I +P    L+   D  G L  G+  ++ S  FL  
Sbjct: 1216 SCRVLMDHVRVMIDQYCEELKEKLHIRIPHSTTLLCVADPTGTLREGEVSLRFSNGFLDP 1275

Query: 794  CFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH-----HLYDCLVF 848
                        ++ QVI G +++A+NP   P DI+ ++AVD    H      L D +VF
Sbjct: 1276 ---------KTLRRTQVITGDILVARNPAHIPSDIQKVKAVDIQPYHSLALRELQDVIVF 1326

Query: 849  PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEA-------KTLTR 901
              +GD+   +  SG D DGD  +V W+E L+ P   S  P  Y   +A       K+ TR
Sbjct: 1327 STQGDQSLASLLSGGDYDGDKPWVCWEERLVKPFTNS--PTTYVEVDAMVAPWFNKSQTR 1384

Query: 902  --------PVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAAT 953
                    P      ++   +   N+N    C +      + +    D   + LA+L + 
Sbjct: 1385 VSGLNPSQPGFFERFLQIGLRSSFNDNFLGQCTSIWEKRCYEKNDIADLEALKLAKLCSL 1444

Query: 954  AVDFPKTG 961
             VD PK G
Sbjct: 1445 LVDAPKQG 1452


>gi|251765120|sp|Q5QMN4.2|RDR4_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 4; Short=OsRDR4
          Length = 1183

 Score = 97.1 bits (240), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 162/381 (42%), Gaps = 44/381 (11%)

Query: 642  RESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
            ++S++  QS ++   + +  R    F +  +I LL    VP+E F  +  + + + +   
Sbjct: 673  KKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNAR 732

Query: 702  VDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761
             D   A  +       + +  A M+ +G  P  E +L+  L  +   +  G++   +I +
Sbjct: 733  FDYAGALNIAFNYADMEDSMPARMILSGI-PLEESYLQSRLDFLSLLERKGIK-NGKIPI 790

Query: 762  PAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNP 821
                +LMG  D  G L   +  + +           +G           + G V++ K P
Sbjct: 791  DDCYYLMGTADPTGKLGPNEVCVILD----------YGQ----------VSGDVLVYKYP 830

Query: 822  CLHPGDIRILEAVDHPELHHLYD----CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEN 877
             LHPGDI +L+A    ++  +       ++FP  G R   +E + SD DGD+Y+V+ +  
Sbjct: 831  GLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPK 890

Query: 878  LI---PPSKKSWPPMEYNAAEAK--------TLTRPVDQRDIIEFFAKHMVNENLGT--- 923
            L+    PSK   P +  N  + K         L R +    +   FA         T   
Sbjct: 891  LLEHFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWL 950

Query: 924  --ICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGK 981
              +     V  D SE   +++  + L +L   A+D PK G  V +P  L  K YP FM +
Sbjct: 951  VYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDR 1010

Query: 982  EAYQSYKSNKILGRLYRQSKD 1002
                SY S+ ILG++Y ++ D
Sbjct: 1011 SP--SYHSSSILGKIYDKAGD 1029


>gi|169598368|ref|XP_001792607.1| hypothetical protein SNOG_01986 [Phaeosphaeria nodorum SN15]
 gi|111069078|gb|EAT90198.1| hypothetical protein SNOG_01986 [Phaeosphaeria nodorum SN15]
          Length = 1428

 Score = 96.7 bits (239), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 16/206 (7%)

Query: 722  AAIMLSAGFNPQTEPHL-RGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
            A ++L  GF P   P L R +   ++  QLW + EK R  +    +L+G  D LG+L+ G
Sbjct: 924  AKLLLRTGFQPYQSPFLARTLKRFVQQRQLW-MEEKLRAPLGRATYLIGLADPLGILKPG 982

Query: 781  QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH 840
            +  +Q S+PFL          +       +    VVI + P     D++ + AV HP+L 
Sbjct: 983  EVHVQFSKPFL--------DEYGRNTYRNLAGEEVVITRQPACRRSDMQKMRAVSHPQLS 1034

Query: 841  HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLT 900
            HL D +VF  +G  P   +  G D DGD ++V W+ +L+ P   +  P   N  E +   
Sbjct: 1035 HLVDVVVFSSRGIYPAAGKLQGGDYDGDTFWVCWEPDLVVPFLNA--PAPLNDLEPQKYG 1092

Query: 901  RPVDQRDIIEFFAKHMVNENLGTICN 926
               D R + +    H    +L T+ N
Sbjct: 1093 IKKDTRKLTDIMNPH----DLSTVDN 1114


>gi|443894414|dbj|GAC71762.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
          Length = 1339

 Score = 96.7 bits (239), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 138/554 (24%), Positives = 212/554 (38%), Gaps = 120/554 (21%)

Query: 422 KAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDI----- 476
           K   LPP++  S R  R++   ++  LR+T MD  L         + + P  R+      
Sbjct: 398 KVQLLPPKLGGSCRFARRFG--SENILRLT-MDRSLAR---EARRFPLHPKTREKHQEIS 451

Query: 477 -----TLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLR-DCSAWFFSEDGKT 530
                TL    ++ R F     I+   FYLC         SS+Q   DC  W F +    
Sbjct: 452 DFFGRTLQILGRRFRPFICKDDII---FYLC---IGSPGSSSAQPEFDC-VWDFVDHHAP 504

Query: 531 SVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVE----VPPTEVDPELPDIKRNGYVF 586
              +    +G+F  +       ++G   S   +T++    V     DP    +     + 
Sbjct: 505 FAANGSSQLGKFIQR------IQLGLSTSVPASTIDTITYVSDLRGDPH--PVTGEQVIM 556

Query: 587 SDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGV------VACW-PAKGDGIRM 639
           +DG   ++  +A +VAQ+L L     P A Q R AG KGV         W P +     +
Sbjct: 557 TDGAATMSLAVARDVAQRLSL--TSVPSAIQARVAGAKGVWYLDPNAQSWLPGEEPKRWI 614

Query: 640 SLRESMNKFQS--------HHTTLEICSWTRF-QPGFLNRQIITLLSTLNVPDEMF---- 686
            +R+S NK +             L++ + +R   P  L++QII +L +  VP E F    
Sbjct: 615 HIRKSQNKIEYPRDEPRDLSQQVLDLLTASRTTSPSSLSKQIILVLHSNGVPTETFAALQ 674

Query: 687 -------------WSMQDSMLSKLNQMLVDSDVAFEVLTAACA----------------- 716
                        W   D ++SK    +VD     E L A  +                 
Sbjct: 675 QAELRAITDSISNWEGPDLLVSKALAKVVDDLCQVEKLRAKRSTEAAEHRAQGMGLSDST 734

Query: 717 -------------EQG------------NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLW 751
                        E+G              A  ML  GF+P++  +L G L  I    + 
Sbjct: 735 QMDTVGDDRDFFFEKGRHIWNGMPLSKPERAHDMLKIGFHPRSCSYLAGFLVEIADTAMK 794

Query: 752 GLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVI 811
            + ++  + +      M   D  G LE G+   +    F G+      SR A      V 
Sbjct: 795 KVTQRFAVSIARSAEAMVIPDPTGTLEEGEIQFR----FSGDSICDPDSRLALH---HVP 847

Query: 812 KGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYF 871
           +G V++ ++PCL P DIR + AV   EL    D +VF  KG  P  +  SG D DGDL  
Sbjct: 848 EGDVLVTRHPCLLPTDIRKVRAVVRSELSRFQDVVVFSTKGHTPLASLLSGGDYDGDLIR 907

Query: 872 VTWDENLIPPSKKS 885
           V W+  L+ P K +
Sbjct: 908 VFWEPRLVDPFKNA 921


>gi|242211203|ref|XP_002471441.1| predicted protein [Postia placenta Mad-698-R]
 gi|220729496|gb|EED83369.1| predicted protein [Postia placenta Mad-698-R]
          Length = 865

 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 154/390 (39%), Gaps = 77/390 (19%)

Query: 625  GVVACWPAKGDGIRMSLRESMNKFQS--HHTTLEICSWTRFQPGFLNRQIITLLSTLNVP 682
            GV+   P       +  R S  KF +   +T   +     +  G LN  II LL++L V 
Sbjct: 7    GVLMLHPELNQDHHVHFRASQRKFSATRDNTFSMVDHSVPYAFGRLNNDIIVLLASLGVT 66

Query: 683  DEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGML 742
             E   + Q+S    +     D +VAF  L A    Q + A  +L  G   Q      G+ 
Sbjct: 67   PEALLAKQESYHQWIRAASSDWEVAFNFLCAV--GQYDFAERLLLDGIEAQ------GVQ 118

Query: 743  TCIRAAQLWGL-------REKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCF 795
            T IRA Q+  L       + ++R+ +   R L G  D  GVL  G+              
Sbjct: 119  TKIRACQMSELASFKKNEKFRSRMIILKSRLLFGVCDPYGVLREGEVH------------ 166

Query: 796  SKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRP 855
                                               L AVDHP+L HL DC+VF  KG R 
Sbjct: 167  -----------------------------------LWAVDHPKLAHLVDCVVFSSKGKRA 191

Query: 856  HTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKH 915
              + +SG DLDGD + V WD +L+P  KK      Y A + +  T+ V + D+ + FA +
Sbjct: 192  APSMSSGGDLDGDRFLVMWDPDLVP--KKVAESYTYPAPKERVGTQ-VTRADLAKHFAAY 248

Query: 916  MVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY 975
                 L  I   H      S  GA+ + C  L  L + AVD    G  + +P  L     
Sbjct: 249  NTMA-LAKITALHARWVRCSPKGAMGDECQELNALHSQAVD----GAPIKIPERLLSPPD 303

Query: 976  PDF-----MGKEAYQSYKSNKILGRLYRQS 1000
            PD      + +E+ + +  + I GRL   S
Sbjct: 304  PDTPYIIDLLQESAKHFFDSFIPGRLQSAS 333


>gi|46117554|ref|XP_384795.1| hypothetical protein FG04619.1 [Gibberella zeae PH-1]
          Length = 1079

 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 183/431 (42%), Gaps = 72/431 (16%)

Query: 583 GYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGV----VACWPAKGDGIR 638
           G V +DGIG+++  L  +V   L+LD    P A Q R    KG+    +   P++   I 
Sbjct: 394 GNVMNDGIGRVSLALMRKVQNALQLDY--LPAAIQGRIGSAKGLWVLDIGTQPSE---IW 448

Query: 639 MSLRESMNKFQ-----SHHTTLEICSWTR-FQPGFLNRQIITLLSTL-----NVPDEMFW 687
           +   ES  K+        H TLE+ S +   +   LN Q I++L +      N    M  
Sbjct: 449 LETYESQRKWNCDWKDPEHRTLEVLSQSSDLKTATLNHQFISILESRSVDRRNTRAAMVK 508

Query: 688 SMQDSMLSKLN-------------QMLVDSDVA----------FEVLTAACAEQGNTAAI 724
            M+ ++ + L+             + + ++  A             L  + AEQ    + 
Sbjct: 509 HMKINLQTSLDHAKESMKQPELFRKWIHETSYASYGGRNESWFIGGLPKSWAEQ---MSF 565

Query: 725 MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI 784
           +   GF P    +L  + T    +Q    +EK RI +    W +  +D  GVL   +  +
Sbjct: 566 LSDGGFEPLHLRYLHNLTTNHMESQWKNTKEKMRIEISQSTWALMVVDFQGVLGPDEVQL 625

Query: 785 QVSEPFLGNCFSKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLY 843
             S PF  + F K   R+        ++GF V++A+ P   P DI+ ++AV  PEL HL 
Sbjct: 626 CFSSPF-NDGFEK---RYD-------LEGFDVIVARCPAHLPSDIQKVKAVFKPELRHLK 674

Query: 844 DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPP--------MEYNAAE 895
           D +VFP  G  P   + SG D DGD  ++ WD +++   + S  P         E N   
Sbjct: 675 DVVVFPFVGQEPLAGKLSGGDYDGDKAWICWDADIVDNFRNSEVPQKPSFNGYFEANDHT 734

Query: 896 AKTLTRPVDQRDIIEF-----FAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAEL 950
            ++L     +   +++     F  H+  + +G +C  +     + +    D + I ++ L
Sbjct: 735 VESLILKHGKSHYLDYLLEEAFTFHLTPKLVG-LCTNYKERLAYDKNSIEDPSVINMSWL 793

Query: 951 AATAVDFPKTG 961
            +  VD PK+G
Sbjct: 794 LSALVDQPKSG 804


>gi|302782930|ref|XP_002973238.1| hypothetical protein SELMODRAFT_413790 [Selaginella moellendorffii]
 gi|300158991|gb|EFJ25612.1| hypothetical protein SELMODRAFT_413790 [Selaginella moellendorffii]
          Length = 878

 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 189/461 (40%), Gaps = 76/461 (16%)

Query: 585 VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIR--YAG--CKGVVACWPAKGDGIRMS 640
           + +DG G I+ DLA +VA     +    P   Q+R  Y G   KG +           + 
Sbjct: 274 IHTDGTGFISEDLAKQVAVNTSEEY---PALLQVRLFYHGIAVKGTLLTLKTLQHKT-IV 329

Query: 641 LRESMNKFQS--------HHTTLEICSWTRFQP-GFLNRQIITLLSTLNVPDEMFWSMQD 691
            R+SM K ++           +LEIC+ +   P   L+R +I LL    VP+  F  +  
Sbjct: 330 YRDSMLKVKADPKLANCPSFNSLEICTTSHKPPVASLSRYVIALLLEGGVPESFFIQVVQ 389

Query: 692 SMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLW 751
             ++K    L D   A  + +      G+    M+ AG  P T+  LR  L  +   QL 
Sbjct: 390 EAIAKAMTPLQDIAAAHRLCSRFSF--GDMPRRMILAGI-PLTDHFLRNSLMTMIRTQL- 445

Query: 752 GLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVI 811
               KA + +    +LMG  D    L   Q  I                   E   L   
Sbjct: 446 KRYAKANVPLEGSYYLMGSADPTNTLARNQVAI-----------------LLENGPLHRH 488

Query: 812 KGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD----CLVFPQKGDRPHTNEASGSDLDG 867
           K  V++ K+P +HPGD+ + EA  + EL          ++FP KG R   +E + SDLDG
Sbjct: 489 K--VLVYKHPGMHPGDVHVFEATWNQELESCLGNSKYVIIFPTKGPRSVVHEIANSDLDG 546

Query: 868 DLYFVTWDE---NLIPPSKKSWPPMEYNAAEAK----TLTRPVDQRDIIEFFAKHMVNEN 920
           DLY++  +E   NL  P +  W     N   A      ++  V    ++  F + +   N
Sbjct: 547 DLYWICTNEQVSNLYKP-QLPWQEKRTNGTTAVPSCLGMSPEVIMSRLVAMFLRAIFKPN 605

Query: 921 LGTICNAH--VVHADHSEYGALD--------ENCIL-LAELAATAVDFPKTGKIVTMPAH 969
                 A   ++H D     + D        +NC+L LA+L   A+D  KTG++VT+   
Sbjct: 606 FAISRAATNWLIHMDKYLSTSFDNVREREFRQNCLLELADLYYLALDADKTGEMVTIEDR 665

Query: 970 LK-PKLYPDFMGKEAYQS------------YKSNKILGRLY 997
           L   K+ P F+ +E   +            Y+S  I G++Y
Sbjct: 666 LLCDKIKPHFLVEENSNNPNRRKIQQQDNVYRSTSIFGKIY 706


>gi|330915603|ref|XP_003297095.1| hypothetical protein PTT_07392 [Pyrenophora teres f. teres 0-1]
 gi|311330417|gb|EFQ94809.1| hypothetical protein PTT_07392 [Pyrenophora teres f. teres 0-1]
          Length = 1415

 Score = 94.7 bits (234), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 150/343 (43%), Gaps = 55/343 (16%)

Query: 582  NGYVFSDGIGKITPDLAM---EVAQKLKLDVNPPPCAYQIRYAGCKGV----VACWPAKG 634
            +G V  DG   I+   A+    + +K      P P  +Q R AG KGV       +    
Sbjct: 735  DGAVMDDGCSIISVGAALIIWHLYRKATGTTGPLPSIFQGRIAGAKGVWMISAESYTKDP 794

Query: 635  DGIR--MSLRESMNKF---------QSHHTTLEICSWTRF-QPGFLNRQIITLLSTLNVP 682
            D ++  + +  S  KF           HH T E+ +++    P  L+   I +L    VP
Sbjct: 795  DHLKPWIMINASQWKFNPPEDAMLDHEHHRTFELSNYSSSPTPSELHISFIPILVDRKVP 854

Query: 683  DEMFWS-MQDSM---LSKLNQMLVD------------------SDVAFEVLTAACAEQGN 720
              +  S M+DS+    +KL  +L D                  +DV ++       E+  
Sbjct: 855  MTVIDSLMKDSLEVERTKLLDLLPDPVKIYDWVHRNGTKTQTGNDVPWQAAMPVSLEE-- 912

Query: 721  TAAIMLSAGFNP-QTEPHLRGMLTCIRAAQLWGLRE-KARIFVPAGRWLMGCLDELGVLE 778
               ++L +GF+P +  P  + +   I+A Q+  L+E K R+ +    +L G +D LGVLE
Sbjct: 913  KVKLLLESGFSPAKFSPLAQSLQRFIQAKQI--LQESKLRVPLAKSTFLFGIVDPLGVLE 970

Query: 779  GGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE 838
             G+  +Q S  F  +          + K L +    V++A+ P     DI+ +  V   E
Sbjct: 971  PGEIQVQFSSSFADDT--------TDEKYLCLRDMEVLVARQPACRRSDIQKVRTVIRSE 1022

Query: 839  LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
            L HL D +VFP KG  P   +  G D DGD++++ W+  L+ P
Sbjct: 1023 LSHLVDVVVFPSKGRYPLAGKLQGGDYDGDIFWICWEPQLVQP 1065


>gi|402577566|gb|EJW71522.1| hypothetical protein WUBG_17571 [Wuchereria bancrofti]
          Length = 89

 Score = 94.4 bits (233), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/96 (48%), Positives = 61/96 (63%), Gaps = 7/96 (7%)

Query: 767 LMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPG 826
           + G LDE G+L+ GQ F+Q    F  + F K   + A      ++KGFV+I KNP +  G
Sbjct: 1   MFGILDETGLLQYGQVFVQ----FTNDVFLKTPPKAAAKT---IVKGFVLITKNPSIVAG 53

Query: 827 DIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASG 862
           D+RI EAVD PEL HL D +VFPQ G RPHT+E +G
Sbjct: 54  DVRIFEAVDLPELRHLVDVVVFPQHGPRPHTDEMAG 89


>gi|396489578|ref|XP_003843139.1| similar to RNA-directed RNA polymerase 2 [Leptosphaeria maculans JN3]
 gi|312219717|emb|CBX99660.1| similar to RNA-directed RNA polymerase 2 [Leptosphaeria maculans JN3]
          Length = 1435

 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 159/407 (39%), Gaps = 74/407 (18%)

Query: 533  LDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEV----------DPELPDIKRN 582
             DI +W      +N+ K  +R+    S T  T+   P+++           PE  +    
Sbjct: 685  FDINQW------QNLYKAYSRIALGLSRTIPTLVFKPSQIRLVKDIRSDGTPEANEFNDE 738

Query: 583  GY----------VFSDGIGKITPDLAM---EVAQKLKLDVNPPPCAYQIRYAGCKGV--- 626
            G           V +DG  +I+   A    E+  +      P P A+Q R  G KG+   
Sbjct: 739  GLDWDEKCSQPQVMNDGCARISVGAARIIWEMYCRATGSDEPLPSAFQGRIRGAKGMWMV 798

Query: 627  ---VACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGF---------------- 667
                     + + I + + +S +K++ H       ++   +  F                
Sbjct: 799  SAEAHTRDEEHNDIWIEISDSQSKYEPHEADKNDATFNSHRLTFNYVKHSHVNGSTDLHI 858

Query: 668  ----------LNRQIIT--LLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL---T 712
                      + R +I   ++  LNV       M    +   N +   S     V+    
Sbjct: 859  SFIPILVDRGVKRDVIADFIIKHLNVERAQLLDMLSEPVKLHNWVTKQSSATSGVIPWEA 918

Query: 713  AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLD 772
            A    Q     ++L AGF PQ  P L  +L  +   +   + +K R  + +  +L+G  D
Sbjct: 919  ALPVSQSEKVKLLLRAGFTPQDSPFLAKVLINLIRQRQSVMEQKLRAPLGSATFLLGLAD 978

Query: 773  ELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILE 832
              GVLE GQ  I  S PF+ + FS+   R  +  +       V+IA+ P     DI+ + 
Sbjct: 979  PEGVLEPGQVHISFSLPFV-DEFSRQTYRHLDGLE-------VLIARQPACRRSDIQKVR 1030

Query: 833  AVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
             V + +L HL D +VFP +G  P   +  G D DGD+++  W+ +L+
Sbjct: 1031 VVTYSKLAHLRDVIVFPTRGQYPLAGKLQGGDYDGDIFWTCWENDLV 1077


>gi|361130936|gb|EHL02666.1| putative RNA-dependent RNA polymerase 2 [Glarea lozoyensis 74030]
          Length = 902

 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 84/181 (46%), Gaps = 34/181 (18%)

Query: 850 QKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDII 909
           QKG R   ++ SG DLDGD Y++ WDE   P  K+++   +Y       + R V++ D+ 
Sbjct: 536 QKGARDLPSKLSGGDLDGDRYYIMWDELARP--KRTFAAADYPKVSPVNIGRRVEREDMS 593

Query: 910 EFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAH 969
           +FF + M ++ LG I   H V AD    G  D  C+L+AE+ +TAVDF KTG  V M   
Sbjct: 594 DFFLQFMESDQLGRIAVNHRVKADQRPGGTNDPECLLMAEMHSTAVDFSKTGIPVDMSRM 653

Query: 970 -LKPKLYPDFMGK-------------------------------EAYQSYKSNKILGRLY 997
               K  PDF                                    Y+ YKS KILG+LY
Sbjct: 654 PFGNKYRPDFEAPGPHVHIEEDGINFDDPTFEDPMEIEDEDDEYSTYRYYKSEKILGKLY 713

Query: 998 R 998
           R
Sbjct: 714 R 714


>gi|3687225|gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana]
          Length = 929

 Score = 93.6 bits (231), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 146/331 (44%), Gaps = 52/331 (15%)

Query: 709  EVLTAACAEQG----NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAG 764
            ++  AA    G      AA M+  G  P  EPHL+  L+ +   +   L+   ++ V   
Sbjct: 461  QIFGAAALNYGEMDDQNAAQMILVGI-PLDEPHLKNYLSILLKTEKNDLK-AGKLPVTES 518

Query: 765  RWLMGCLDELGVL-EGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCL 823
             +LMG +D  G L E   C I  S                       I G V++ +NP L
Sbjct: 519  YYLMGTVDPTGALKEDEVCVILESGQ---------------------ISGEVLVYRNPGL 557

Query: 824  HPGDIRILEAVDHPELHHLYD----CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
            H GDI IL+A     L          + FPQKG R   +E +G D DGD+YF++ +  L+
Sbjct: 558  HFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELL 617

Query: 880  PPSKKS--W----PPMEYNAAEAKTLTRPVDQRDIIE-------FFAKHMVN---ENLGT 923
               K S  W    PP + N+  A +   P +  + +        F A +++    ++  T
Sbjct: 618  ENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLT 677

Query: 924  ICNAHVVHADH--SEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGK 981
            I +  ++  D    E   + +  + L ++   A+D PK G  V +P  LKP ++P +M +
Sbjct: 678  IMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMER 737

Query: 982  EAYQSYKSNKILGRLYRQSKDAYDEDISVSS 1012
            +  + ++S  ILG ++   K    E+ S SS
Sbjct: 738  D--KKFQSTSILGLIFDFVKSQTTEEPSPSS 766


>gi|345562071|gb|EGX45143.1| hypothetical protein AOL_s00173g244 [Arthrobotrys oligospora ATCC
           24927]
          Length = 1092

 Score = 93.2 bits (230), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 114/481 (23%), Positives = 196/481 (40%), Gaps = 76/481 (15%)

Query: 537 KWM---GRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKI 593
           KWM    +  + + AK  AR+   FS T   V +   ++  E   +    +  +DG G  
Sbjct: 356 KWMISPSQNQEMSTAKYNARIKLGFSRT-VLVPLENVQIKEEKDLVSTIKFPMTDGCGTA 414

Query: 594 TPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDG--IRMSLRESMNKFQSH 651
           T  +   +A+K+ LD    P  +QIR+ G KG++       D   +R++ R++  KF++ 
Sbjct: 415 TFAVLKAIAEKMGLDY--VPSYFQIRHGGRKGLILLDVENSDSESLRITYRKTQIKFETR 472

Query: 652 HT-TLEICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSK--LNQMLV----- 702
               +E+  + R  + G +  Q +T+L    V  E   ++    + K  + ++L      
Sbjct: 473 QDLNIEVVDYARPLKRGKITSQFLTILHNGGVSKETLGNLAKEEIEKDGIWELLERAGDP 532

Query: 703 ----------------DSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIR 746
                           D D  F+   +  A        M+ AGF       L+ +++   
Sbjct: 533 SFVKNFYQSGALKKRRDKDGCFKYAGSMPASAEERIIQMVDAGFAVSECLVLKNLISGCN 592

Query: 747 AAQL--WGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAE 804
             +L  W      +  +     +    D   VL  G+ F+Q         FS  G  F +
Sbjct: 593 KNRLDSWN---DLKFTISESTSVKCAPDFKKVLREGEVFLQ---------FSSDGFVFND 640

Query: 805 TKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLY----DCLVFPQKGDRPHTNEA 860
            K L+ + G V++ ++P     DI+   AV +PE+   Y    DC+VFP  G+    +  
Sbjct: 641 -KLLKFLSGKVLVGRSPAYIASDIQSAIAVMNPEVLEAYGDLVDCIVFPIVGEYSLASRL 699

Query: 861 SGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAK------ 914
           SG D DGD   V WD+ ++ P     PP   + +  K L +   ++D +  + K      
Sbjct: 700 SGGDYDGDSVLVIWDQRVVEPFSSRLPPK--STSVRKDLFKESTEQDTVGCYLKDNEMDE 757

Query: 915 -------------HMVNENLGTICNAHVVHADHSEYGALDEN-CILLAELAATAVDFPKT 960
                         M++++   IC   ++H   S Y  +D    I LAELA   +D PK 
Sbjct: 758 DATIKAILRAEIPKMLSDSNVGICT--LMHKKVSYYLGIDHPLSIRLAELACLLLDAPKQ 815

Query: 961 G 961
           G
Sbjct: 816 G 816


>gi|429856861|gb|ELA31752.1| RNA-dependent RNA polymerase [Colletotrichum gloeosporioides Nara
           gc5]
          Length = 1365

 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 142/337 (42%), Gaps = 58/337 (17%)

Query: 583 GYVFSDGIGKITPDLAMEVAQKLKL-DVNPPPCAYQIRYAGCKGV-VACWPAKGDGIRMS 640
           G V +DGIG+++P LA ++   L L D+   P A Q R+   KG+ +      GD + + 
Sbjct: 675 GKVMNDGIGRMSPKLAQKIKNVLGLQDI---PSAIQGRFGPAKGMWLIDIQDTGDDLWIE 731

Query: 641 LRESMNKFQ-----SHHTTLEICSWT-RFQPGFLNRQIITLLSTLNVPDE-MFWSMQDSM 693
              S  K+        H TLEI S     +   LN Q + +L    V    M  ++ DS+
Sbjct: 732 TWPSQRKWNCDYLDPEHRTLEIKSHAAEPRSASLNIQFLPVLEDRAVDKPGMRKAIGDSL 791

Query: 694 LSKLN----------------------------QMLVDSDVAFEVLTAACAEQGNTAAIM 725
           + +LN                            Q L+ + V F  L         T   +
Sbjct: 792 VDELNRELEGQKNAMKYPVQFRQWVNENSIGRKQRLIHNSVPF--LAGLPDSNEETMNFL 849

Query: 726 LSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQ 785
           +  GF P  +  ++ +   +R  +   L++K  I +P   +    +D  GVLE  +  + 
Sbjct: 850 IDGGFEPSKQKFIQDIAWNLRRQKCENLKKKMSIKIPNSAYFYMVIDFWGVLEENEVHLC 909

Query: 786 VSEPFLGNCFSK---HGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
            S  F    FS    HG               V++A++P     D++ ++AV  PELH L
Sbjct: 910 FSSKFQTESFSDSMLHGCD-------------VLVARSPAHFVSDVQRVKAVFKPELHAL 956

Query: 843 YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
            D +VF  KGD P  ++ SG D DGD  +V W+  ++
Sbjct: 957 KDVIVFSAKGDIPLADKLSGGDYDGDKAWVCWEPAIV 993


>gi|342881586|gb|EGU82475.1| hypothetical protein FOXB_07061 [Fusarium oxysporum Fo5176]
          Length = 1387

 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 123/538 (22%), Positives = 212/538 (39%), Gaps = 118/538 (21%)

Query: 427  PPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTR 486
            PP +EL +R+ R++   ADRFL V                   +P  RD   +   Q  +
Sbjct: 519  PPRLELGHRLARRFG--ADRFLEVIM----------------PSPTSRDAP-DVIKQDPQ 559

Query: 487  VFKRVRSILSGGF-YLCGRKFS--FLAFSSSQLRDCS------------AWFFSEDG--- 528
               +V   L+  F Y  GR ++  +   ++  ++D               +FF+ DG   
Sbjct: 560  GANKVIKWLTESFHYFVGRSWAAFYTREANKSIKDPRPPHKSLTIMQERVYFFATDGINF 619

Query: 529  --------------------KTSVLDIKKW---MGRFTDKNIAKCAARMGQCFSSTYATV 565
                                K    D+  W   + + + + + K  +R+    S T  T+
Sbjct: 620  QVPMSQFPPLEEAISLGHRTKMRRCDLLNWAINIEQNSSQPVPKLFSRLALSLSKTVPTI 679

Query: 566  EVPPTEVDPELPDIKRNGYV----------FSDGIGKITPDLAMEVAQKLKLDVNPPPCA 615
             + P +       +  + Y+            DGIG+++ +LA  +A  + L   P  CA
Sbjct: 680  VIEPHQFRHRDTMLGFHKYMSNKEKKEQKDMGDGIGRVSRNLARRIATHMGLLETP--CA 737

Query: 616  YQIRYAGCKGVVACWPAKGDGIRM--------SLRESMNKFQS-HHTTLEICSWTR-FQP 665
            +Q R    KG+      + DG+          S R+    F+  HH T E+  W+R  + 
Sbjct: 738  FQARIGSAKGMWIV-DVEDDGLDNDDWIETYPSQRKWNCDFEDVHHRTFEVREWSRELRS 796

Query: 666  GFLNRQIITLL-STLNVPDEM--------FWSMQDSMLSKLNQMLVDSDV------AFEV 710
              LN Q I +L +   VP +M           +Q+ +  +L  M   +++       F+ 
Sbjct: 797  AALNTQFIPVLEAQAPVPQDMRNVISRHLTNGLQEEIGGQLAAMTHPTNLRGFTHRGFDR 856

Query: 711  LT--------AACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVP 762
             T        A    + +  + ML AGF+      LR M+   +  Q   L+ K  I +P
Sbjct: 857  ATLGNVPFVGALPEREEDIISYMLDAGFDATKCRFLRDMVWNNQKRQADQLKAKMNIKIP 916

Query: 763  AGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGF-VVIAKNP 821
               +    +D  G LE G+  +  S  F            A+ +   ++ G  +++A+ P
Sbjct: 917  RSTYAFMTVDFTGTLEEGEVQLAFSSKFQ-----------ADGESDTLLDGIDILVARAP 965

Query: 822  CLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
                 DI+ ++AV  P L  L D +VF  KG  P  +  SG D DGDL ++ WD +++
Sbjct: 966  AHFVSDIQKVKAVFRPNLKRLKDVIVFSSKGKSPLADMLSGGDYDGDLAWICWDPDVV 1023


>gi|367049126|ref|XP_003654942.1| hypothetical protein THITE_2079458 [Thielavia terrestris NRRL 8126]
 gi|347002206|gb|AEO68606.1| hypothetical protein THITE_2079458 [Thielavia terrestris NRRL 8126]
          Length = 1373

 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 163/369 (44%), Gaps = 52/369 (14%)

Query: 549 KCAARMGQCFSSTYATVEVPPTEVDPELPDI-KRNGYVFSDGIGKITPDLAMEVAQKLKL 607
           K  +R+    S T+ TV   P ++     DI    G + +DGIG+++  +A ++   L L
Sbjct: 628 KLFSRIQLGLSKTFPTVTFEPNQIRHRTDDILSPAGKIMNDGIGRMSRSVARKIRDALGL 687

Query: 608 -DVNPPPCAYQIRYAGCKGVVACWPA-KGDGIRMSLRESMNKFQ-----SHHTTLEICS- 659
            D+   P A Q R    KG+     A  GD   +    S  K++     + H TLEI S 
Sbjct: 688 SDI---PSAIQGRMGSAKGMWLMDVADAGDDDWIETYPSQRKWKCDDADALHRTLEIRSV 744

Query: 660 WTRFQPGFLNRQIITLLST----------------LNVPDEMFWSMQDSMLSKL------ 697
            T  +P  LN Q + +L                  +N   + F S + ++   L      
Sbjct: 745 STELKPAALNLQFLPVLEDRAKDKARMRRAIAARLMNDLKKQFDSQKAAVERPLQFRQWV 804

Query: 698 -------NQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQL 750
                  ++ +    V F  L      +G   + +L++GF+ + + +++ +   ++  + 
Sbjct: 805 NECTNSRSERVRHGQVPF--LGGLPENKGEVLSFLLNSGFD-RRQKYIQDLAFDLQKQRC 861

Query: 751 WGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
             LR K  I V    ++   +D  GVLE  +  +  S  F  +          +T  + +
Sbjct: 862 EVLRTKLNIHVGRSAYMFMVVDFWGVLEENEVHVGFSSKFRDDV--------DDTTYMLL 913

Query: 811 IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
               V++A++P   P DI+ + AV  P+LH L D +VFP KGD P  ++ SG D DGD+ 
Sbjct: 914 TDCDVLVARSPAHFPSDIQKVRAVFKPQLHALKDVIVFPAKGDIPLADKLSGGDYDGDMA 973

Query: 871 FVTWDENLI 879
           +V WD +++
Sbjct: 974 WVCWDPDIV 982


>gi|122920829|pdb|2J7N|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
 gi|122920830|pdb|2J7N|B Chain B, Structure Of The Rnai Polymerase From Neurospora Crassa
 gi|122920831|pdb|2J7O|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
          Length = 1022

 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 155/372 (41%), Gaps = 57/372 (15%)

Query: 549 KCAARMGQCFSSTYATVEVPPTEVDPELPDI---KRNGYVFSDGIGKITPDLAMEVAQKL 605
           K  +R+    S TYA + + P ++     D+      G V +DG+G+++  +A  +   L
Sbjct: 287 KLFSRIQLGLSKTYAIMTLEPHQIRHHKTDLLSPSGTGEVMNDGVGRMSRSVAKRIRDVL 346

Query: 606 KL-DVNPPPCAYQIRYAGCKGV-VACWPAKGDGIRMSLRESMNKFQ-----SHHTTLEIC 658
            L DV   P A Q R+   KG+ V      GD   +    S  K++      H  TLE+ 
Sbjct: 347 GLGDV---PSAVQGRFGSAKGMWVIDVDDTGDEDWIETYPSQRKWECDFVDKHQRTLEVR 403

Query: 659 S-WTRFQPGFLNRQIITLLS------------------------------TLNVPDEMFW 687
           S  +  +   LN Q++ +L                                LN P E   
Sbjct: 404 SVASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRLINDLQRQFSEQKHALNRPVEFRQ 463

Query: 688 SMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRA 747
            + +S  S+  ++   S      L      Q  T   ++++GF+P+ + +L+ +   ++ 
Sbjct: 464 WVYESYSSRATRV---SHGRVPFLAGLPDSQEETLNFLMNSGFDPKKQKYLQDIAWDLQK 520

Query: 748 AQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKK 807
            +   L+ K  I V    ++    D  GVLE  +  +  S  F          R  E   
Sbjct: 521 RKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGFSSKF----------RDEEESF 570

Query: 808 LQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDG 867
             +    V++A++P   P DI+ + AV  PELH L D ++F  KGD P   + SG D DG
Sbjct: 571 TLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHSLKDVIIFSTKGDVPLAKKLSGGDYDG 630

Query: 868 DLYFVTWDENLI 879
           D+ +V WD  ++
Sbjct: 631 DMAWVCWDPEIV 642


>gi|320587947|gb|EFX00422.1| RNA-dependent RNA polymerase [Grosmannia clavigera kw1407]
          Length = 1358

 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 184/420 (43%), Gaps = 54/420 (12%)

Query: 520 SAWFFSEDGKTSVLDIKKWM---GRFTDKNIA---KCAARMGQCFSSTYATVEVPPTEVD 573
           S W F  +    V D+ +W+    RF +       K  +R+    S T  TV   P ++ 
Sbjct: 561 SEWRFGHE--LQVHDMLEWLLQYNRFHENRTQPYLKLFSRIALGLSRTIPTVVFEPEQMR 618

Query: 574 PELPDIKR--NGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP 631
               DI     G V +DGIG+++  +A +V  + +L ++  P A Q R    KG+    P
Sbjct: 619 HHASDITAPATGKVMNDGIGRMSLSVARKV--RFELGLSDLPAAVQGRLGCAKGMWILDP 676

Query: 632 AKGDGIR-MSLRESMNKFQ-----SHHTTLEICSW-TRFQPGFLNRQIITLLSTLNV-PD 683
               G   +    S  K++       H TLE+ ++ +  +   LN+Q++ +L    +   
Sbjct: 677 TDTGGEDWIETYPSQRKWKCDFVDPDHRTLEVRNYASAVRSAGLNQQLLPVLEDRAIDKS 736

Query: 684 EMFWSMQDSMLSKLNQMLVDSDVAFE--VLTAACAEQGNTA------------------- 722
            M   + D +   L + L     A E  +L +A  ++ + +                   
Sbjct: 737 RMRTVIGDILRGNLYRDLATQRTALEHPLLFSAWVQENSRSRDERSAHCQVRFLGGLPDS 796

Query: 723 -----AIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVL 777
                  +LS GF+P+ +  +  +   I+ A+   L+EK  + V    +L   +D LGVL
Sbjct: 797 DSEVVQFLLSGGFDPRVQKMIWDVAYKIQKAKCEKLKEKLNVRVGRTAYLHMVVDFLGVL 856

Query: 778 EGGQCFIQVSEPFLGNCFSKHGSR-----FAETKKLQVIKGFVVIAKNPCLHPGDIRILE 832
           E G+  +  S  F  +  S+   R     F+++    ++   V++A++P     D++ + 
Sbjct: 857 EEGEVQVCFSSKFQVDADSEPDERGDDGSFSDS---LLVGTDVLVARSPAHFASDVQRVR 913

Query: 833 AVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYN 892
           AV   EL  L D ++F +KGD P  ++ SG D DGD+ +V WD  ++     +  P +Y+
Sbjct: 914 AVFRKELCVLKDVVIFSRKGDSPLADKLSGGDYDGDMAWVCWDGRIVENFSNAREPEKYD 973


>gi|3687227|gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
          Length = 966

 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 180/419 (42%), Gaps = 54/419 (12%)

Query: 668  LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLS 727
            L+R ++ LLS   VP++ F ++  + L +   +      AF+       +Q     I++ 
Sbjct: 491  LSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYTADMILVG 550

Query: 728  AGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVS 787
                P  EP+L+  L+ +   +   L+   R  +    ++MG +D  G L+  +      
Sbjct: 551  I---PLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKENEI----- 601

Query: 788  EPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD--- 844
                  C   H  +         I G V++ +NP LH GDI +L+A     L        
Sbjct: 602  ------CVILHSGQ---------ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAK 646

Query: 845  -CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI-------PPSKKSWPPMEYNAAEA 896
              + FPQKG R   +E +G D DGD+YF++ +  L+       P    S P   Y   + 
Sbjct: 647  FAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKP 706

Query: 897  KTLTRPVDQRDIIEFFAK---------HMVNENLGTICNAHVVHADHS--EYGALDENCI 945
              L+    + ++ + F K          M  +    I +  +   D S  E     +N +
Sbjct: 707  SELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNIL 766

Query: 946  LLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYD 1005
             L ++   A+D PK G  V +P  L+ K +P +M ++  + ++S  ILG ++  + D+++
Sbjct: 767  KLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIF-DTVDSHN 825

Query: 1006 EDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLN-GLLEQYKVNREE 1063
             +    SE+      + Y  D  VP+S      +W +  +Y  +++  ++E  KV R +
Sbjct: 826  AEEPPPSEIS----KLWYFEDEPVPKSHMDKFTSWYE--NYRSEMSQAMMETDKVKRNQ 878


>gi|42569164|ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
 gi|322967566|sp|O82190.2|RDR3_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 3; Short=AtRDRP3;
            AltName: Full=RNA-directed RNA polymerase 3
 gi|330251848|gb|AEC06942.1| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
          Length = 992

 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 180/419 (42%), Gaps = 54/419 (12%)

Query: 668  LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLS 727
            L+R ++ LLS   VP++ F ++  + L +   +      AF+       +Q     I++ 
Sbjct: 517  LSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYTADMILVG 576

Query: 728  AGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVS 787
                P  EP+L+  L+ +   +   L+   R  +    ++MG +D  G L+  +      
Sbjct: 577  I---PLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKENEI----- 627

Query: 788  EPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD--- 844
                  C   H  +         I G V++ +NP LH GDI +L+A     L        
Sbjct: 628  ------CVILHSGQ---------ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAK 672

Query: 845  -CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI-------PPSKKSWPPMEYNAAEA 896
              + FPQKG R   +E +G D DGD+YF++ +  L+       P    S P   Y   + 
Sbjct: 673  FAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKP 732

Query: 897  KTLTRPVDQRDIIEFFAK---------HMVNENLGTICNAHVVHADHS--EYGALDENCI 945
              L+    + ++ + F K          M  +    I +  +   D S  E     +N +
Sbjct: 733  SELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNIL 792

Query: 946  LLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYD 1005
             L ++   A+D PK G  V +P  L+ K +P +M ++  + ++S  ILG ++  + D+++
Sbjct: 793  KLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIF-DTVDSHN 851

Query: 1006 EDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLN-GLLEQYKVNREE 1063
             +    SE+      + Y  D  VP+S      +W +  +Y  +++  ++E  KV R +
Sbjct: 852  AEEPPPSEIS----KLWYFEDEPVPKSHMDKFTSWYE--NYRSEMSQAMMETDKVKRNQ 904


>gi|375281950|gb|AFA45121.1| RNA-directed RNA polymerase 2 [Plenodomus tracheiphilus]
          Length = 1382

 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 166/424 (39%), Gaps = 92/424 (21%)

Query: 539  MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEV-------------DPELPDIKRN--- 582
            + R  ++N  K  AR+    S T  T+   P+++             + E  D   N   
Sbjct: 635  LDRNQEQNFCKAYARLDLGLSRTIPTLVFKPSQIRRIRDEVSDGSLEEDEFNDKTLNWSE 694

Query: 583  ----GYVFSDGIGKITPDLAMEVAQKLKLDVN---PPPCAYQIRYAGCKGVVACWPAKGD 635
                  V +DG  +I+   A+++ +  +       P P A+Q R  G KG+   W    +
Sbjct: 695  KPGEPQVMNDGCARISVGAALKIWEAYRSATGSDEPFPSAFQGRIRGAKGM---WMVSAE 751

Query: 636  G---------IRMSLRESMNKFQ------------SHHTTLEICSWT----------RFQ 664
                      I + + +S +KF+            SH  T      +           F 
Sbjct: 752  AHTRNEEHKDIWIEIADSQSKFEPALEDEDDNTYNSHRLTFNYVQHSFVNGSTDLHISFI 811

Query: 665  PGFLNRQI-----------------ITLLSTLNVPDEMF-WSMQDSMLSKLNQMLVDSDV 706
            P  ++R +                   LL TL  P ++  W  +       N +     +
Sbjct: 812  PILVDRGVERHNIADFMEKHLDIERKQLLETLTEPVKLHNWVTKQGSAIPANGI-----I 866

Query: 707  AFEVLTAACAEQGNTAAIMLSAGFNPQTEPHL-RGMLTCIRAAQLWGLREKARIFVPAGR 765
            A E     C  +      +L AGF PQ  P L RG++  IR  Q   + +K R  + +  
Sbjct: 867  AREAALPKCIPE--KVKYLLRAGFTPQDSPFLARGLMQLIRQRQSV-MEQKLRAPLGSAT 923

Query: 766  WLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHP 825
            +L+G  D   VL  G+  I  S PF+ + F++   R  +  +       V+IA+ P    
Sbjct: 924  FLLGLADPENVLRPGEVHINFSSPFV-DEFNRQTYRHLDGLE-------VLIARQPACRQ 975

Query: 826  GDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS 885
             DI+ +  V HP+L HL D +VF  +G  P   +  G D DGD +++ W+  L+ P K +
Sbjct: 976  SDIQKVRVVAHPQLAHLRDVVVFATRGQYPLAGKLQGGDYDGDTFWICWESILVEPFKNA 1035

Query: 886  WPPM 889
              PM
Sbjct: 1036 PAPM 1039


>gi|85091735|ref|XP_959047.1| hypothetical protein NCU07534 [Neurospora crassa OR74A]
 gi|4803727|emb|CAB42634.1| RNA-dependent RNA polymerase [Neurospora crassa]
 gi|28920444|gb|EAA29811.1| predicted protein [Neurospora crassa OR74A]
          Length = 1402

 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 155/369 (42%), Gaps = 51/369 (13%)

Query: 549  KCAARMGQCFSSTYATVEVPPTEVDPELPDI---KRNGYVFSDGIGKITPDLAMEVAQKL 605
            K  +R+    S TYA + + P ++     D+      G V +DG+G+++  +A  +   L
Sbjct: 667  KLFSRIQLGLSKTYAIMTLEPHQIRHHKTDLLSPSGTGEVMNDGVGRMSRSVAKRIRDVL 726

Query: 606  KL-DVNPPPCAYQIRYAGCKGV-VACWPAKGDGIRMSLRESMNKFQ-----SHHTTLEIC 658
             L DV   P A Q R+   KG+ V      GD   +    S  K++      H  TLE+ 
Sbjct: 727  GLGDV---PSAVQGRFGSAKGMWVIDVDDTGDEDWIETYPSQRKWECDFVDKHQRTLEVR 783

Query: 659  S-WTRFQPGFLNRQIITLLSTLNVPD-EMFWSMQDSMLSKLNQMLVDSDVAFE------- 709
            S  +  +   LN Q++ +L        +M  ++ D +++ L +   +   A         
Sbjct: 784  SVASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRLINDLQRQFSEQKHALNRPVEFRQ 843

Query: 710  -------------------VLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQL 750
                                L      Q  T   ++++GF+P+ + +L+ +   ++  + 
Sbjct: 844  WVYESYSSRATRVSHGRVPFLAGLPDSQEETLNFLMNSGFDPKKQKYLQDIAWDLQKRKC 903

Query: 751  WGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
              L+ K  I V    ++    D  GVLE  +  +  S  F          R  E     +
Sbjct: 904  DTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGFSSKF----------RDEEESFTLL 953

Query: 811  IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
                V++A++P   P DI+ + AV  PELH L D ++F  KGD P   + SG D DGD+ 
Sbjct: 954  SDCDVLVARSPAHFPSDIQRVRAVFKPELHSLKDVIIFSTKGDVPLAKKLSGGDYDGDMA 1013

Query: 871  FVTWDENLI 879
            +V WD  ++
Sbjct: 1014 WVCWDPEIV 1022


>gi|119479435|ref|XP_001259746.1| RNA-directed RNA polymerase, putative [Neosartorya fischeri NRRL 181]
 gi|119407900|gb|EAW17849.1| RNA-directed RNA polymerase, putative [Neosartorya fischeri NRRL 181]
          Length = 1338

 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 149/603 (24%), Positives = 232/603 (38%), Gaps = 98/603 (16%)

Query: 549  KCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLD 608
            K   R+    S TYAT+ + P ++   L D+  N  V +DG   ++  LA  +  +L + 
Sbjct: 622  KLFQRISLGLSKTYATIALKPWQI-LHLGDVP-NRPVMNDGCALMSRRLANAICDQLGIT 679

Query: 609  VNPPPCAYQIRYAGCKGV------VACWPAKGDGIRMSLRESMNKFQSH----------- 651
             N P  A+Q R AG KG+       +     GD   + + +S  K Q H           
Sbjct: 680  GNTP-SAFQGRIAGAKGLWMVDRHNSGISGGGDDFWIQISDSQLKIQPHPQAWREPIDDE 738

Query: 652  HTTLEICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEV 710
              T E+  W++   P  LN Q++ +L       E    +  + +  ++Q           
Sbjct: 739  KLTFEVVKWSKPLHPVELNTQLLAILEHGGQVREYIAELTRAGIRAISQDF--------- 789

Query: 711  LTAACAEQGNTAAI--MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKA----------- 757
               A   + N+AA+   L     P  +    GM   ++  + W   +             
Sbjct: 790  ---ASVLESNSAALCRSLIQKIKPMADDGSSGMSQRMKRLEQWTANDAEAIIRLTEAGFA 846

Query: 758  -RIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGF-- 814
             R F P  + L  CL +L      +  I+V       C +     +   K+ +V  GF  
Sbjct: 847  LRSFYPLRKRLGRCLRDLLDRYADELHIEVPLSTYAFCIA---DPYGVLKEDEVHFGFSN 903

Query: 815  ------------------VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPH 856
                              V++ + P   P DI+   AV  PEL H  D +VFP  GD P 
Sbjct: 904  NWRDARGQFEDNLLDGVDVLVGRLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTTGDIPL 963

Query: 857  TNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR-PVDQRDI---IEF- 911
             +  SG D DGD  ++ WD+N++   + S  P E    E   LT+  V  RDI    EF 
Sbjct: 964  AHMLSGGDYDGDTPWICWDQNIVQRFQNSDLPTEEYPPEHFGLTKHSVSMRDIESTDEFL 1023

Query: 912  ---FAKHMVNENLG--TICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTM 966
               F  ++   NLG  T+ +  + + +  +     E   LL+ L    VD  K G  ++ 
Sbjct: 1024 QSAFTFNLTTSNLGRCTLEHEKIAYDESIDSARAKELACLLSHL----VDGRKGGVHLSE 1079

Query: 967  PA--HLKPKLYPDFMGKEAYQSY----KSNKILGRL----YRQSKDAYDEDISVSSEVDI 1016
             A    + K+ P      AY++     K   I+  L     R+ + A  ED+  +   D 
Sbjct: 1080 QAWQQYRKKISPKAREVPAYKNAGRKPKKTNIIDYLKFEVARKERHAVLEDLQRAFPEDD 1139

Query: 1017 NPVDIHYDTDLEVP-ESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPK 1075
            +  D   D DL  P       A+   Q  S  GQL   L +Y     E L +  I S+  
Sbjct: 1140 SVYD--RDEDLVRPWNEAQREAEIEKQGESEHGQLRAAL-KYAQREVERLYSQWISSISG 1196

Query: 1076 YNS 1078
             NS
Sbjct: 1197 ENS 1199


>gi|452845289|gb|EME47222.1| hypothetical protein DOTSEDRAFT_69242 [Dothistroma septosporum
           NZE10]
          Length = 816

 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 8/182 (4%)

Query: 718 QGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVL 777
           +G     ML +GF PQ + +L  ++  +    L   R+  +I VP    ++G  D LG L
Sbjct: 309 KGEQIIQMLESGFFPQEDAYLAELVVEMVGNYLTLKRKNFKIHVPRSTTVIGISDPLGCL 368

Query: 778 EGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHP 837
           + G+  I  S PF  +   K G+ +     + V+       +NP +   D++ L AV  P
Sbjct: 369 QPGEIHIGFSTPFRDH---KAGASWMHLHGMNVLS-----TRNPSMAGSDMQKLRAVYKP 420

Query: 838 ELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAK 897
           EL HL D +VFP +G RP   +  G D DGD +++ W+ +L+ P   +  P E +    +
Sbjct: 421 ELAHLRDVVVFPSQGMRPLAGKLQGGDYDGDTFWLCWEPSLVDPFLNAPAPWETDVPTPE 480

Query: 898 TL 899
            L
Sbjct: 481 QL 482


>gi|42569166|ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
 gi|322967571|sp|O82189.2|RDR4_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 4;
           Short=AtRDRP4; AltName: Full=RNA-directed RNA polymerase
           4
 gi|330251849|gb|AEC06943.1| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
          Length = 927

 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 115/475 (24%), Positives = 200/475 (42%), Gaps = 92/475 (19%)

Query: 579 IKRNGY--VFSDGIGKITPDLA------------MEVAQKLKLDVNPPPCAYQIRY---- 620
           + +NG   + SDG G I+ DLA            M         V  PP   QIR     
Sbjct: 393 LDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTCVQEPPLLIQIRMFNDG 452

Query: 621 AGCKGVVAC---WPAKGDGIRMSL-----RESMNKFQSHHTTLEICSWTRFQPGFLNRQI 672
           +  KG+       P +   +R S+      ++++ F + ++   + +    +   L++ +
Sbjct: 453 SAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAKLSKNL 512

Query: 673 ITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTA--ACAEQGN----TAAIML 726
           + LLS   VP++ F  +       LN +     + F+V  A  A    GN     A  M+
Sbjct: 513 VALLSYGGVPNDFFLDIL------LNTLEKKKTIFFKVRAAGKAALHYGNMDDKNALQMI 566

Query: 727 SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQV 786
            AG  P  EP+L+  L+ +   +   L+   ++ +    +LMG +D  G L+  +     
Sbjct: 567 MAGI-PLDEPYLKHYLSKLLKLEKDDLK-AGKLPIDESYYLMGTVDPTGELKEDEV---- 620

Query: 787 SEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD-- 844
                        S  A+++        V++ +NP LH GDI IL+A     L       
Sbjct: 621 -------------SGLAKSQD-------VLVYRNPGLHFGDIHILKATYVKSLEQYVGNS 660

Query: 845 --CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPME-------YNAAE 895
              + FPQKG R   +E +G D DGD+YF++ +  L+   K S P +        Y   +
Sbjct: 661 KYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQ 720

Query: 896 AKTLTRPVDQRDIIEFFAKHMVNEN--LGTICNAHVVHADHSEYGAL-DENC-------- 944
              L+    + ++ + F K   + +  +G   ++ +   D   +  L DEN         
Sbjct: 721 PSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMD--RFLTLGDENVKEKAEMKK 778

Query: 945 --ILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLY 997
             + L ++   A+D PKTG  V +P  +K  L+P +M  E  +++KS  ILG ++
Sbjct: 779 KMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYM--ERNKTFKSTSILGLIF 831


>gi|302823993|ref|XP_002993644.1| hypothetical protein SELMODRAFT_431698 [Selaginella moellendorffii]
 gi|300138572|gb|EFJ05336.1| hypothetical protein SELMODRAFT_431698 [Selaginella moellendorffii]
          Length = 884

 Score = 90.1 bits (222), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 127/497 (25%), Positives = 198/497 (39%), Gaps = 90/497 (18%)

Query: 551 AARMGQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQKLKLD 608
            +R+    S T+     P  E+      +  NG   + +DG G I+ DLA +        
Sbjct: 256 GSRLQLALSKTWTANHDPGGEIA-----VGCNGKPLIHTDGTGFISEDLAKQEY------ 304

Query: 609 VNPPPCAYQIR--YAG--CKGVVACWPAKGDGIRMSLRESMNKFQS--------HHTTLE 656
               P   Q+R  Y G   KG +           +  R+SM K ++           +LE
Sbjct: 305 ----PALLQVRLFYHGIAVKGTLLTLKTLQHKT-IVYRDSMLKVKADPKLANCPSFNSLE 359

Query: 657 ICSWTRFQP-GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAAC 715
           IC+ +   P   L+R +I LL    VP+  F  +    ++K    L D   A  + +   
Sbjct: 360 ICTTSHKPPVASLSRYVIALLLEGGVPESFFIQVVQEAIAKAMTPLQDIAAAHRLCSRFS 419

Query: 716 AEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELG 775
              G+    M+ AG  P T+  LR  L  +   QL     KA + +    +LMG  D   
Sbjct: 420 F--GDMPRRMILAGI-PLTDHFLRNSLMTMIRTQLKRY-AKANVPLEGSYYLMGSADPTN 475

Query: 776 VLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVD 835
            L   Q  I                   E   L   K  V++ K+P +HPGD+ + EA  
Sbjct: 476 TLARNQVAI-----------------LLENGPLHRHK--VLVYKHPGMHPGDVHVFEATW 516

Query: 836 HPELHHLYD----CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE---NLIPPSKKSWPP 888
           + EL          ++FP KG R   +E + SDLDGDLY++  +E   NL  P +  W  
Sbjct: 517 NQELESSLGNSKYVIIFPTKGPRSVVHEIANSDLDGDLYWICTNEQVSNLYKP-QLPWQE 575

Query: 889 MEYNAAEAK----TLTRPVDQRDIIEFFAKHMVNENLGTICNAH--VVHADHSEYGALD- 941
              N   A      ++  V    ++  F + +   N      A   ++H D     + D 
Sbjct: 576 KRTNGTTAVPSCLGMSPEVIMSRLVAMFLRAIFKPNFAISRAATNWLIHMDKYLSTSFDN 635

Query: 942 -------ENCIL-LAELAATAVDFPKTGKIVTMPAHLK-PKLYPDFMGKEAYQS------ 986
                  +NC+L LA+L   A+D  KTG++VT+   L   K+ P F+ +E   +      
Sbjct: 636 VREREFRQNCLLELADLYYLALDADKTGEMVTIEDRLLCDKIKPHFLVEENSNNPNRRKI 695

Query: 987 ------YKSNKILGRLY 997
                 Y+S  I G++Y
Sbjct: 696 QQQDNVYRSTSIFGKIY 712


>gi|336470141|gb|EGO58303.1| hypothetical protein NEUTE1DRAFT_82729 [Neurospora tetrasperma FGSC
            2508]
 gi|350290166|gb|EGZ71380.1| RNA-dependent RNA polymerase [Neurospora tetrasperma FGSC 2509]
          Length = 1402

 Score = 90.1 bits (222), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 155/369 (42%), Gaps = 51/369 (13%)

Query: 549  KCAARMGQCFSSTYATVEVPPTEVDPELPDI---KRNGYVFSDGIGKITPDLAMEVAQKL 605
            K  +R+    S TYA + + P ++     D+      G V +DG+G+++  +A  +   L
Sbjct: 667  KLFSRIQLGLSKTYAIMTLEPHQIRHHKTDLLSPSGTGEVMNDGVGRMSRSVAKRIRDVL 726

Query: 606  KL-DVNPPPCAYQIRYAGCKGV-VACWPAKGDGIRMSLRESMNKFQ-----SHHTTLEIC 658
             L DV   P A Q R+   KG+ V      GD   +    S  K++      H  TLE+ 
Sbjct: 727  GLGDV---PSAVQGRFGSAKGMWVIDVDDTGDEDWIETYPSQRKWECDFVDKHQRTLEVR 783

Query: 659  S-WTRFQPGFLNRQIITLLSTLNVPD-EMFWSMQDSMLSKLNQMLVDSDVAFE------- 709
            S  +  +   LN Q++ +L        +M  ++ D +++ L +   +   A         
Sbjct: 784  SVASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRLINDLQRQFSEQKHALNRPVEFRQ 843

Query: 710  -------------------VLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQL 750
                                L      Q  T   ++++GF+P+ + +L+ +   ++  + 
Sbjct: 844  WVYESYSSRATRVSHGRVPFLAGLPDSQEETLNFLMNSGFDPKKQKYLQDIAWDLQKRKC 903

Query: 751  WGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
              L+ K  I V    ++    D  GVLE  +  +  S  F          R  E     +
Sbjct: 904  DTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGFSSKF----------RDEEESFTLL 953

Query: 811  IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
                V++A++P   P DI+ + AV  PELH L D ++F  KGD P   + SG D DGD+ 
Sbjct: 954  SDCDVLVARSPAHFPSDIQRVRAVFKPELHSLKDVIIFSTKGDVPLAKKLSGGDYDGDMA 1013

Query: 871  FVTWDENLI 879
            +V WD  ++
Sbjct: 1014 WVCWDPAIV 1022


>gi|449436040|ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
            sativus]
          Length = 1056

 Score = 90.1 bits (222), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 168/394 (42%), Gaps = 46/394 (11%)

Query: 637  IRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSK 696
            I++ +   +  F++ ++   + +    +  FL+R +I LL+   VP E F ++    L  
Sbjct: 552  IKVEIDPDLENFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMNILVDALKD 611

Query: 697  LNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREK 756
            +  +      A  V            A M+ AG  P  E +L+  L+ +   +   L+  
Sbjct: 612  VQGVFSSKRAALRVSINNGEMDDFLVARMILAGI-PLDESYLQYRLSVLLKEEKKSLKS- 669

Query: 757  ARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVV 816
             R+ VP   +LMG +D    LE G+            C   +  +         I G V+
Sbjct: 670  GRLHVPECYYLMGTVDPTFTLESGEV-----------CVILYNGQ---------INGKVL 709

Query: 817  IAKNPCLHPGDIRILEA--VDH--PELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFV 872
            + +NP LH GDI +L A  V+   P + +    + F  KG R   +E +G D DGD+Y+V
Sbjct: 710  VYRNPGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWV 769

Query: 873  TWDENLIPPSKKSWPPMEYNAAEAKTLTRPVD------QRDIIEFF---------AKHMV 917
            + +  L+   +   P     + E  T  +P +      + ++ + F         AK + 
Sbjct: 770  SRNSQLLEYFRPCEPWRPSPSTEVVTNKKPKEFSADELENELFKLFLSTRFQPSYAKSVA 829

Query: 918  NENLGTICNAHVVHADH--SEYGALDENCILLAELAATAVDFPKT-GKIVTMPAHLKPKL 974
             +N   + +  ++  +    E   +    + L  +   A+D PK  GK + +P HLK   
Sbjct: 830  ADNWLALMDQFLMLGEERKEERNCIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGT 889

Query: 975  YPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDI 1008
             P FM +    SY S  ILG+++  + + Y E++
Sbjct: 890  LPHFM-ERGKNSYVSTSILGQIF-DTANMYQEEV 921


>gi|299740358|ref|XP_001838853.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
 gi|298404206|gb|EAU82968.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
          Length = 1548

 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 110/238 (46%), Gaps = 20/238 (8%)

Query: 494 ILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAA 552
           +   G +L G ++ F   S+SQLR  S +    +    + D    +G F+   NIAK A 
Sbjct: 41  MFKAGVFLNGVQYRFYHHSNSQLRGRSCFLREANSDKELDDRIYALGDFSRINNIAKRAK 100

Query: 553 RMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL---DV 609
           R+G  FSS      + PT V+ ++ DI+  G VFSDG G I+  L  ++A+  KL    +
Sbjct: 101 RIGLLFSSAEVDFNLDPTFVE-DIGDIEIGGEVFSDGCGLISKSLTKQIAKAKKLMFRGI 159

Query: 610 NPPPCAYQIRYAGCKGVVACWPAKGDGIRM----------SLRESMNKFQ--SHHTTLEI 657
              P   QIRY G KGV+   P   +  R             R+SM KF+  S H+   +
Sbjct: 160 RYTPVVIQIRYEGYKGVLMLHPDLDERNRQREPGTPPCYAQFRKSMKKFKATSDHSFSVV 219

Query: 658 CSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSM---LSKLNQMLVDSDVAFEVLT 712
                +  G LN  IITL+ +L V  E   + Q      ++ + Q+  D   A + L+
Sbjct: 220 GYSKPYSFGRLNNDIITLIHSLGVTKEKLVAKQQEYFDWIASITQLDTDPTAALDFLS 277



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 12/145 (8%)

Query: 831 LEAVDHPELHHLYDCLVFP----QKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW 886
           L AVDHP+L HL DCLVF     + G +P  + +SG DLDGD +FV WD++L+PP  +  
Sbjct: 309 LRAVDHPQLSHLVDCLVFASAVRRPGSKPAPSLSSGGDLDGDEFFVCWDQDLVPP--RVS 366

Query: 887 PPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCIL 946
            P +Y     +   + V + D+   FA +  +  +  +   H   A  S  GAL   C  
Sbjct: 367 EPYDY-PPNKEPRPKAVTRADLANHFASY-TSSGVAKVSALHNKWAISSPLGALCVECQE 424

Query: 947 LAELAATAVDFPKTGKIVTMPAHLK 971
           L  L + +VD    G  + +P  L+
Sbjct: 425 LNALHSQSVD----GAPIKIPERLQ 445


>gi|380489167|emb|CCF36884.1| RNA-directed RNA polymerase [Colletotrichum higginsianum]
          Length = 1354

 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 149/336 (44%), Gaps = 60/336 (17%)

Query: 585 VFSDGIGKITPDLAMEVAQKLKL-DVNPPPCAYQIRYAGCKGVVACWPAKGDG-IRMSLR 642
           V +DGIG+++  LA +V   L L DV   P A Q R+   KG+     ++ DG + +   
Sbjct: 654 VMNDGIGRMSRSLARKVRDVLGLSDV---PSAIQGRFGPAKGMWLTDISEEDGKLWLETW 710

Query: 643 ESMNKFQS-----HHTTLEICSWT----------RFQPGFLNRQI----------ITLLS 677
            S  K+ S      H TLE+ S            +F P   +R I            L+ 
Sbjct: 711 PSQRKWDSDFKDPEHRTLEVRSHAMDTKSASLNLQFLPVMEDRAIDKDLMRETIGKNLVD 770

Query: 678 TLNVP-DEMFWSMQDSML---------SKLNQMLVDSDVAF-EVLTAACAEQGNTAAIML 726
            LN   +E   +M+ S+L         S   Q L +  + F   L  +  E+ N    ++
Sbjct: 771 ELNREIEEQKNAMKYSLLFRQYVNKGASTRKQRLTNGRIPFLGGLPDSSEERMN---FLI 827

Query: 727 SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQV 786
             GF PQ++ +L+ +   +R A    L +K  I VP   +L   +D   VLE G+  +  
Sbjct: 828 DGGFEPQSQKYLQDLSWSLRRAHCDKLLKKMSIKVPESAYLFMVIDFWNVLEEGEVHLCF 887

Query: 787 SEPFLGNCFSK---HGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLY 843
           S  F  + FS    HG               V++A++P     D++ ++AV  PELH + 
Sbjct: 888 SSKFQTDTFSDSMLHGCD-------------VLVARSPAHFVSDVQRVKAVFKPELHAIK 934

Query: 844 DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
           D +VF  KG+ P  ++ SG D DGD  +V WD  ++
Sbjct: 935 DVIVFSAKGNVPLADKLSGGDYDGDKAWVCWDPAIV 970


>gi|407919378|gb|EKG12628.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
            MS6]
          Length = 1485

 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 108/466 (23%), Positives = 195/466 (41%), Gaps = 97/466 (20%)

Query: 531  SVLDIKKW---MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEV--------DPELPDI 579
            +V D+  W   + + + +   K  AR+    ++T  T++  P++V        D EL D 
Sbjct: 645  TVFDLINWFMPLAKNSHQPYLKAFARISLGLTATTPTLQFKPSQVRYVTDIVADGELEDP 704

Query: 580  ------------KRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGV- 626
                        KR   V +DG   I+   A ++ ++      P P  +Q R  G KG+ 
Sbjct: 705  AFNDKSLVWRNDKRPKRVMNDGCSLISVGAARKLWEQTN-RTEPLPSTFQGRIGGAKGMW 763

Query: 627  -VACWPAKGDG----IRMSLRESMNKFQSH------------------HTTL----EICS 659
             ++  P   D     + + + +S  KF++H                  H+T     E   
Sbjct: 764  MISDSPDTTDSRHLKVWIQISDSQLKFKAHSEDQSESEYDPHRLTFDLHSTTGTAGESSV 823

Query: 660  WTRFQPGFLNRQIIT------------------LLSTLNVPDEMFW-SMQDSMLSKLNQM 700
            +  F P   NR +                    L S  N      W + Q+S+  + N+ 
Sbjct: 824  YLSFFPILENRGVSAKALQKLFESHLDREREKILASVTNRVGLRTWLNQQNSLAEERNR- 882

Query: 701  LVDSDVAFEVLTAACAEQGNTAAIMLS-AGFNPQTEPHLRGMLTCIRAAQLWGLREKARI 759
              D ++ ++   A+   Q +  AI+L+ +GF+   + +L  +   + A  L  LR+  R+
Sbjct: 883  --DENMTWQ---ASMPLQLHEKAILLAESGFDISCD-YLADVAHRLLAKSLRLLRQNIRV 936

Query: 760  FVPAGRWLMGCLDELGVLEGGQCFIQVSEPFL----GNCFSKHGSRFAETKKLQVIKGFV 815
             +P   ++ G  D LGVL+ G+  +  +  F+    G+C S   +R             V
Sbjct: 937  PLPRCTYIKGVADPLGVLKPGEIHVHFTRRFVDEVSGDCLSYLNNRN------------V 984

Query: 816  VIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 875
            ++A+NP L   DI+ + +  +  L HL D +VFP +G  P   +  G D DGD +++ W+
Sbjct: 985  LVARNPALRASDIQKVRSTFNLRLGHLKDVVVFPTRGTFPLAGKLQGGDYDGDTFWICWE 1044

Query: 876  ENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENL 921
              ++ P K + PP+E    + K     VD+R + +      ++E L
Sbjct: 1045 PEMVEPFKNAPPPLE--DPDPKKCQIKVDKRKLADMCKGDSISEFL 1088


>gi|414588061|tpg|DAA38632.1| TPA: hypothetical protein ZEAMMB73_690745 [Zea mays]
          Length = 462

 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 149/330 (45%), Gaps = 65/330 (19%)

Query: 725  MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQ-CF 783
            M+ +G  P  EP+L   L+ +   ++   RE  ++ +    +LMG  D  G L+  + C 
Sbjct: 39   MIHSGI-PLEEPYLLSRLSFMAKQEMKVFRE-GKLPIDECYYLMGTTDPTGTLKPNEVCV 96

Query: 784  IQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEA--VDHPE--- 838
            I  S  + G+                     V++ K+P LH GDI IL A  +D  E   
Sbjct: 97   ILDSGQYSGD---------------------VLVFKHPGLHFGDIHILTARQIDGLEKNF 135

Query: 839  LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS---WPPMEYNAAE 895
            + +  + ++FP  G R   +E + SD DGD ++V+ +  L+   +K    W  +      
Sbjct: 136  IGYSKNAILFPTSGQRSLADEMANSDFDGDEFWVSRNNMLLKTFEKRSEPWVELLKLKET 195

Query: 896  AKTLTRPVDQRDIIEFFAKHMVNENLGTIC----------NAHVVH--------ADHSEY 937
               L++P D  ++I    + + NE L T+           +  + H         D  E 
Sbjct: 196  QHRLSKPGDLNELI--LERVLFNECLTTMFIPNYTKGLAPDCWLAHMDRLLTEGVDQDEK 253

Query: 938  GALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLY 997
             ++ EN I L +L   A+D    G  V +  HL+ K YP FM K+ ++SY S+ ILGR+Y
Sbjct: 254  KSIVENMIKLVDLYYAALD----GHKVDVDRHLRVKAYPHFMEKKGFESYHSSSILGRIY 309

Query: 998  RQSKDAY----DEDISVS-----SEVDINP 1018
             ++++      DE I ++     SEV+  P
Sbjct: 310  DETEEIIAQQCDEQIQITTLPCFSEVEATP 339


>gi|218187686|gb|EEC70113.1| hypothetical protein OsI_00772 [Oryza sativa Indica Group]
          Length = 1155

 Score = 89.7 bits (221), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 159/362 (43%), Gaps = 45/362 (12%)

Query: 642  RESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
            ++S++  QS ++   + +  R +    +R +ITLL    VP+E F  +  S +       
Sbjct: 672  KKSLSGVQSVNSFEIVSTSNRPRRTLTSRFLITLLCYGGVPEEYFLELLQSAIEGAENAC 731

Query: 702  VDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761
             D + A  +  +    + + +A M+ +G  P  E +L+  L  +   +  G+++  +I +
Sbjct: 732  YDYEDALRIAFSYADMEDSMSARMILSGI-PLEESYLQHRLDFMAQQERKGIKQ-GKIPI 789

Query: 762  PAGRWLMGCLDELGVLEGGQ-CFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKN 820
                +LM   D  G L   + C I  +  F G+                     V++ K+
Sbjct: 790  DECYYLMDTTDPTGTLRPNEVCVILENGQFSGD---------------------VLVYKH 828

Query: 821  PCLHPGDIRILEAVDHPELHHLYD-----CLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 875
            P LH GDI +L+A    +L   Y       ++FP  G R   +E + SD DGD+Y+V+ +
Sbjct: 829  PGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIYWVSKN 888

Query: 876  ENLIPPSKKSWPPMEYNAAEAKTLTRPVD------QRDIIEFFAKHMVNEN--LGTICNA 927
              L+   K S P ++    +     +P D      +R +   F K     +  LGT  ++
Sbjct: 889  PKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPSFALGTAADS 948

Query: 928  HVVHADHSEYGALDE--------NCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFM 979
             + + D     +LDE          I L +L   A+D PKTG  V +P+ L  K YP FM
Sbjct: 949  WLAYMDRLLTDSLDEIEKKLIEEKMIKLVDLYYLALDAPKTGNKVNIPSDLMVKQYPHFM 1008

Query: 980  GK 981
            G+
Sbjct: 1009 GR 1010


>gi|397594531|gb|EJK56264.1| hypothetical protein THAOC_23889, partial [Thalassiosira oceanica]
          Length = 225

 Score = 89.7 bits (221), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 77/141 (54%), Gaps = 6/141 (4%)

Query: 861 SGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEA-KTLTRPVDQRDIIEFFAKHMVNE 919
           SGSDLDGDL+ VTWDE L    ++S  PM+Y+        T P++   ++  F  H  N+
Sbjct: 2   SGSDLDGDLFAVTWDERLF--LRQSLDPMDYSPPPTLGQETPPINDASLLAHFVGHAKND 59

Query: 920 NLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPK-LYPDF 978
           NLG I    + HA     GA    C+ LA+LA+ AVDFPK+G   T+P  LK K   P  
Sbjct: 60  NLGRISMLWLDHAVTKGGGAGCHECVRLAKLASIAVDFPKSGIPATLPDDLKIKSTVPRA 119

Query: 979 MGKEAYQ--SYKSNKILGRLY 997
             +E     S+  N ILGRLY
Sbjct: 120 HWRELKNNTSFHCNSILGRLY 140


>gi|378728492|gb|EHY54951.1| RNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
          Length = 1308

 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 173/431 (40%), Gaps = 64/431 (14%)

Query: 585  VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGV--VACWPAKGD----GIR 638
            V +DG   ++ +LA  + Q+      PPP A Q R +G KG+  V    +  D    G  
Sbjct: 581  VMNDGCALMSYNLAKNIWQRCG-GQGPPPSAVQGRISGAKGLWLVDYHDSFADVSQRGFW 639

Query: 639  MSLRESMNKFQSH---------HTTLEIC-SWTRFQPGFLNRQIITLLSTLNVPDEMFWS 688
            + + +S  K + H           T E+  S    +   LN Q+IT+L    VP      
Sbjct: 640  IQVSDSQLKIKPHPRDRSADESQRTFEVLKSAGECKEAHLNIQLITILEDRGVPRAALRK 699

Query: 689  MQDSMLSKLNQMLVDSDVAFEVLTAACAEQG-------------------NTAAIMLSAG 729
            + +       + L ++    + L A   E G                   +    +L +G
Sbjct: 700  LLEDDTKSYFESLKEAMEDPKALRAWMQEHGLASRTEVTRFLGSFPLDRRDQMKYLLESG 759

Query: 730  FNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEP 789
            F+P     L+ +        +    E+  I VP    +    D LGVLE GQ FI  + P
Sbjct: 760  FDPTECARLKDLAAGFLQEYMTNYVERLWINVPCSTVVFCAPDPLGVLEEGQVFINFTSP 819

Query: 790  FLGNCFSKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVF 848
                    H +         V++G  V++A+NP     D+++ +AV   ELH   + ++F
Sbjct: 820  VYDPVKGYHDT---------VLEGLDVLVARNPAYLASDMQLCQAVYKHELHLYKNVILF 870

Query: 849  PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAK--TLTRPVD-- 904
            P KG +P  +  SG D DGD   V WD +++     + PP      +     ++RP+   
Sbjct: 871  PVKGKQPLASLLSGGDYDGDTVTVIWDPDIVRNFSNTSPPKLPTEEQCGMVQMSRPLSSI 930

Query: 905  ----QRDIIEFFAKHMVNEN-----LGTICNAH--VVHADHSEYGA---LDENCILLAEL 950
                Q   ++ F +H V+ N     +G   + H  +V++   + G      +  I LA L
Sbjct: 931  YDGVQAFPMQDFLEHCVSFNARPGLMGVCSSEHEKLVYSLSLKRGCDILAHQGAIKLAAL 990

Query: 951  AATAVDFPKTG 961
            A   VD  K G
Sbjct: 991  AGYLVDSSKQG 1001


>gi|342876307|gb|EGU77937.1| hypothetical protein FOXB_11547 [Fusarium oxysporum Fo5176]
          Length = 821

 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 111/461 (24%), Positives = 181/461 (39%), Gaps = 70/461 (15%)

Query: 554 MGQCFSSTYATVEVPPTEVDPELPDIKR-NGYVFSDGIGKITPDLAMEVAQKLKLDVNPP 612
           M  C S T  TV +    +     DI+  NG   +DGIG+I   L  EV   + LD    
Sbjct: 118 MRDCLSKTIPTVLLMGKSIRHRHTDIESSNGTPMNDGIGRIFHSLLREVRDVMGLDF--L 175

Query: 613 PCAYQIRYAGCKGV--VACWPAKGDGIRMSLRESMNKFQSH-----HTTLEICSWTRFQ- 664
           P A Q R  G KG+  +   P   D   + +  S  K+  +     H TLE+ S + +  
Sbjct: 176 PTAIQARIGGAKGLWMMDLSPYPSDERWIEIYPSQRKWHCNWSDPAHRTLEVVSVSSYTG 235

Query: 665 PGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQM----LVDSDVAFEV---------- 710
           P  LN Q I +L    +  ++   M+ ++  ++ +     L ++  A E+          
Sbjct: 236 PASLNLQFIPILEERAIDRKL---MRTTICERIEKHRRNDLGNAKAAMEIPEVFRKWIHE 292

Query: 711 ----------------LTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLR 754
                           +    A+   T + +   GF P+    L  M+   +  +   + 
Sbjct: 293 TSFTTFGDSQDGTSWFVGGLPADWPGTMSFLADGGFEPRRLDFLNTMMFNHQKQRWKQME 352

Query: 755 EKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGF 814
            K  I +      +  +D  GVL   +  +         CFS       +T  L  + GF
Sbjct: 353 TKLHIKIAKSTSALMTIDFQGVLAPNEVQL---------CFSPAFDDGQQT--LDDLGGF 401

Query: 815 -VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVT 873
            V++ + P   P DI+ + AV  PEL H  + ++F   GD P  N+ SG D DGD  +V 
Sbjct: 402 DVLVGRCPAHLPSDIQKVNAVFKPELRHFKNVIIFSSLGDEPLANKLSGGDYDGDKAWVC 461

Query: 874 WDENLIPPSKKSWPP-----MEYNAAEAKTLTRPVDQRD--------IIEFFAKHMVNEN 920
           WD +++   K +  P      EY     +TL     +          + E F  H+    
Sbjct: 462 WDADIVDNFKSTDVPSPHTFKEYFQPNTQTLGILASRYGKPHYLDMFLEEAFDFHLNPSF 521

Query: 921 LGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
           +GT C  +     + E    +E  + L+ L +  VD  K+G
Sbjct: 522 MGT-CTGYKESLAYHEGSIGNETVVKLSMLLSALVDQEKSG 561


>gi|115400193|ref|XP_001215685.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114191351|gb|EAU33051.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 1285

 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 121/477 (25%), Positives = 188/477 (39%), Gaps = 85/477 (17%)

Query: 544  DKNIAKCAARMGQ----CFSSTYATVEVPPTEV-----DPELPDIKRNGYVFSDGIGKIT 594
            D N+ +   ++ Q      S T+ TV++ P ++     +P  P       V +DG   ++
Sbjct: 570  DDNMGQSNCKLFQRTSLGLSKTFETVKLTPNQIIHLKDEPGRP-------VMNDGCALMS 622

Query: 595  PDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGD----GIRMSLRESMNKFQS 650
              LA ++   L +     P A+Q R AG KG+        D     I + + +S  K + 
Sbjct: 623  RGLAKKICVILGI-TGSIPSAFQGRIAGAKGLWMVDKHDSDVSEEDIWLQISDSQLKIKP 681

Query: 651  HHT-----------TLEICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLN 698
            H             T E+  W++   P  LN Q++ +L       E       + L++  
Sbjct: 682  HPAEWKTLIDPEKLTFEVVKWSKPLHPVSLNIQLLAILERGGPVRERI-----AELTRAG 736

Query: 699  QMLVDSDVAFEVLTAAC-------------------------AEQGNTAAIMLSAGFNPQ 733
               +  D A EVL   C                         A        +  AGF P+
Sbjct: 737  MQSIWKDFA-EVLERNCPILCRSLIQKTKPPGEQDRRMEDWAASNSECVIRLCEAGFKPR 795

Query: 734  TEPHLRGML-TCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLG 792
            +  +LR  L  C+R   L     +  I VP   +     D  GVL+  +        F  
Sbjct: 796  SFRYLRHRLRNCLREL-LERYENELHIEVPLSTYAFCIADPYGVLKPDEVHFG----FSS 850

Query: 793  NCFSKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQK 851
            N     G +F +     ++ G  V++A+ P   P DI+ + AV  PEL H  D +VFP  
Sbjct: 851  NWRDPQG-QFEDN----LLDGMDVLVARVPAHFPSDIQRVRAVWKPELRHFKDVIVFPTT 905

Query: 852  GDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDI--I 909
            GD P  ++ SG D DGD  +V WD+ ++   + S  P EY           V  RDI  +
Sbjct: 906  GDVPLAHKLSGGDYDGDTPWVCWDQEIVQNFQNSDLPREYPPEHFGLTNHSVPMRDIQSV 965

Query: 910  EFFAKHMVNENLGTICNAHVVHADHSEYGALDE-----NCILLAELAATAVDFPKTG 961
            + F +  +  NL T+ +      +H E  A DE     N + LA L +  VD  K G
Sbjct: 966  DEFLQSAITYNL-TLSSLGKCTIEH-ERLAYDESIGSPNAMKLASLLSHLVDARKAG 1020


>gi|238580928|ref|XP_002389446.1| hypothetical protein MPER_11425 [Moniliophthora perniciosa FA553]
 gi|215451719|gb|EEB90376.1| hypothetical protein MPER_11425 [Moniliophthora perniciosa FA553]
          Length = 316

 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 126/267 (47%), Gaps = 44/267 (16%)

Query: 408 DDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYK-DLADRFLRVTFMDEGLQTMNANVLS 466
           D I     + ITPT      P  E SNRV+R+YK +    FLRV+F DEG   +  N   
Sbjct: 49  DGIFLCMHVQITPTGMIFDGPIPERSNRVIRQYKSEHHHNFLRVSFNDEGRLQLQFN--- 105

Query: 467 YFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF--- 523
                  R+I  + F     + +RV+     G  + GR F FL +S S L++ + +F   
Sbjct: 106 -------REIDGDDF-----IKRRVQPFFREGLRVAGRVFYFLGYSQSALKEHAVYFMAS 153

Query: 524 FSEDGK-TSVLDIKKWMGRFTDKNI--------AKCAARMGQCFSSTY-ATVEVPPTEVD 573
           F +DGK  +   + + +G F D           A+ AAR+ Q F++T   T EV    +D
Sbjct: 154 FEQDGKQITTASVIESLGSFADLPFDSKLIYCPARYAARISQGFTATDPTTTEVENIVLD 213

Query: 574 PELPDIK---RNG--YVFSDGIGKITPDLAMEVAQK---LKLDVNPPPCAY----QIRYA 621
             LPDI+   +NG   + +DG+G ++P+ A  +  +    +     P   Y    QIR+ 
Sbjct: 214 --LPDIESTDKNGKKQIHTDGVGTMSPEFARSIHAERQSRRRGRRRPLSEYARVLQIRFL 271

Query: 622 GCKGVVACWPAKGDGIRMSLRESMNKF 648
           G KGV++       G  + LR SM KF
Sbjct: 272 GSKGVISVDHTL-SGKTVCLRPSMVKF 297


>gi|350635543|gb|EHA23904.1| hypothetical protein ASPNIDRAFT_40039 [Aspergillus niger ATCC 1015]
          Length = 1307

 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 124/490 (25%), Positives = 193/490 (39%), Gaps = 81/490 (16%)

Query: 549  KCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLD 608
            K   R     S TYATV + P +V P LPD+ +   V +DG   ++  LA ++   L L 
Sbjct: 594  KLFQRFSLALSKTYATVVLQPRQVLP-LPDVSKP--VMNDGCALMSRGLANKICDSLGL- 649

Query: 609  VNPPPCAYQIRYAGCKGV------VACWPAKGDGIRMSLRESMNKFQSH----------- 651
                P A+Q R AG KG+       +   A  + + + + +S  K + H           
Sbjct: 650  TGYTPSAFQGRIAGAKGLWMVDKHQSHVSADDNDVWIQISDSQLKIKPHPCQWDESVDDE 709

Query: 652  HTTLEICSWTR-FQPGFLNRQIITLLS-----TLNVPDEMFWSMQDSMLSKLNQMLVDSD 705
              T E+  W++   P  LN Q++++L        ++ D     +Q       N +  DS 
Sbjct: 710  KLTFEVVKWSKPLHPVNLNIQLLSILDHGGHIKEHLADLTRLGIQSVYQEFANVLQSDSA 769

Query: 706  VAFEVLTAACAEQGNTAAIMLS----------------------AGFNPQTEPHLRGML- 742
            V    L       G+     +S                      AGF P++   LR  L 
Sbjct: 770  VLCRSLVQKIRPSGDDGFGPVSQRTWRFENWMSSDAEFIIRLTEAGFCPRSFYFLRKRLG 829

Query: 743  TCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRF 802
             C+R   L    ++ RI VP   +     D  GVL+  +     S     N +     +F
Sbjct: 830  KCLREL-LKRHVDELRIEVPLSTYAFCIADPYGVLKEDEVHFGFS-----NNWRDGKGQF 883

Query: 803  AETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEAS 861
             +     ++ G  V++ + P   P DI+  +AV   EL H  D +VFP  G  P  +  S
Sbjct: 884  EDI----LLDGIDVLVGRLPAHLPSDIQRRKAVWKSELRHFKDVIVFPSVGSIPLAHMLS 939

Query: 862  GSDLDGDLYFVTWDENLIPPSKKS-WPPMEYNAAEAKTLTRPVDQRDII---EF----FA 913
            G D DGD  ++ WD+N++     S  P +E+ A         V  +DI    EF    F 
Sbjct: 940  GGDYDGDTPWICWDQNIVQNFNNSKLPDIEFPAEHYGLTKYAVGMKDIQSMDEFLQSSFT 999

Query: 914  KHMVNENLG--TICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK 971
             ++   NLG  T+ +  + + D  +     E   LL+ L    VD  K G       HL 
Sbjct: 1000 FNLTLSNLGRCTVEHEKIAYDDSIDSDKAKELACLLSHL----VDGRKAG------VHLS 1049

Query: 972  PKLYPDFMGK 981
             K +  +  K
Sbjct: 1050 EKAWQQYRKK 1059


>gi|121713002|ref|XP_001274112.1| RNA-directed RNA polymerase, putative [Aspergillus clavatus NRRL 1]
 gi|119402265|gb|EAW12686.1| RNA-directed RNA polymerase, putative [Aspergillus clavatus NRRL 1]
          Length = 1313

 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 166/410 (40%), Gaps = 68/410 (16%)

Query: 544 DKNIAKCA--ARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEV 601
           ++N + C    R+    S TYAT+ + P ++   L D+  N  V +DG   ++  LA  +
Sbjct: 593 NRNQSNCKLFQRISLGLSKTYATIILKPWQI-LHLKDVP-NRPVMNDGCALMSRGLANAI 650

Query: 602 AQKLKLDVNPPPCAYQIRYAGCKGVVACW---------PAKGDGIRMSLRESMNKFQSH- 651
              L +  N P C +Q R AG KG+   W            GD   + + +S  K   H 
Sbjct: 651 CDSLGITGNTPSC-FQGRIAGAKGL---WMVDRHQSDISVGGDEFWIQVSDSQLKIHPHP 706

Query: 652 ----------HTTLEICSWTR-FQPGFLNRQIITLL---------------STLNVPDEM 685
                       T E+  W++      LN Q++ +L               + +    + 
Sbjct: 707 QTWREPVDEEKLTFEVVKWSKPLHSVELNTQLLAILEHGGKLRDYIAQLTRTGIQTVYQD 766

Query: 686 FWSMQDS--------MLSKLNQMLVDSDVAFEVLTAACAEQ---GNTAAI--MLSAGFNP 732
           F  + DS        ++ K+ +++ D   A         EQ    +T AI  +  AGF P
Sbjct: 767 FAKVLDSDSPVLCRSLIQKI-KLVADDGSALASQRVKHLEQWTANDTEAIIRLTEAGFAP 825

Query: 733 QTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLG 792
           ++   LR  L       L    ++  I VP   +     D  GVL+  +     S     
Sbjct: 826 RSFYPLRKRLGRCLQDVLARYVDELHIKVPLSTYAFCIADPYGVLQENEVHFGFS----- 880

Query: 793 NCFSKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQK 851
           N +     +F +     ++ G  V++ + P   P DI+   AV  PEL H  D +VFP  
Sbjct: 881 NNWRDAQGQFEDN----LLDGMDVLVGRLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTA 936

Query: 852 GDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR 901
           GD P  +  SG D DGD+ ++ WD+N++   + S  P E    E   LT+
Sbjct: 937 GDIPLAHMLSGGDYDGDMPWICWDQNMVQDFRNSGLPTEEFPPEHFGLTK 986


>gi|116208690|ref|XP_001230154.1| hypothetical protein CHGG_03638 [Chaetomium globosum CBS 148.51]
 gi|88184235|gb|EAQ91703.1| hypothetical protein CHGG_03638 [Chaetomium globosum CBS 148.51]
          Length = 1372

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 158/369 (42%), Gaps = 51/369 (13%)

Query: 549 KCAARMGQCFSSTYATVEVPPTEVDPELPDI-KRNGYVFSDGIGKITPDLAMEVAQKLKL 607
           K  +R+    S T+  V+  P ++     DI    G V +DGIG+++  +A +V   L L
Sbjct: 631 KLFSRIQLGLSKTFPAVKFEPEQILHRPEDILSPTGKVMNDGIGRMSRGVARKVRDALGL 690

Query: 608 -DVNPPPCAYQIRYAGCKGV-VACWPAKGDGIRMSLRESMNKFQ-----SHHTTLEICS- 659
            D+   P A Q R    KG+ +      GD   +    S  K+       +H TLE+ S 
Sbjct: 691 SDI---PSAIQGRMGSAKGMWLMDVGNSGDTDWIETYPSQRKWNCDDTDPYHRTLEVRSV 747

Query: 660 WTRFQPGFLNRQIITLL---------------STLNVPDEMFWSMQDSMLSKLNQM---- 700
            +  +P  LN Q + +L               + L    E+ +  Q + L + +Q     
Sbjct: 748 ASELKPAGLNLQFLPVLEDRARDKRRMKHAIGNRLTNNLELQFENQKTALKRPSQFRQWV 807

Query: 701 ----------LVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQL 750
                     +    V F  L      +      +L++GF+P+++ +L+ +   ++  + 
Sbjct: 808 NENSNDRGSRVKHGQVPF--LGGLPESKSEILHFLLNSGFDPKSQKYLQDLAFELQKQKC 865

Query: 751 WGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
             LR K  I V    ++   +D  GVLE  +  +  S  F         +  A+      
Sbjct: 866 DILRTKLNIRVGRSAYIYMVIDFWGVLEENEVHVGFSSKFRDESDDISYTLLADCD---- 921

Query: 811 IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
               V++A++P     D++ + AV  PELH L D +VF  KG+ P  ++ SG D DGD+ 
Sbjct: 922 ----VLVARSPAHFVSDVQKVRAVFKPELHALKDVIVFSAKGNIPLADKLSGGDYDGDMA 977

Query: 871 FVTWDENLI 879
           +V WD +++
Sbjct: 978 WVCWDPDIV 986


>gi|70997928|ref|XP_753696.1| RNA-directed RNA polymerase [Aspergillus fumigatus Af293]
 gi|66851332|gb|EAL91658.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus Af293]
          Length = 1318

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 159/605 (26%), Positives = 237/605 (39%), Gaps = 102/605 (16%)

Query: 549  KCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLD 608
            K   R+    S TYATV + P ++   L D+  N  V +DG   ++  LA  +  +L + 
Sbjct: 602  KLFQRISLGLSKTYATVTLKPWQI-LHLRDVP-NRPVMNDGCALMSRPLANAICDQLGIT 659

Query: 609  VNPPPCAYQIRYAGCKGV------VACWPAKGDGIRMSLRESMNKFQSH----------- 651
             N P  A+Q R AG KG+       +     GD   + + +S  K Q H           
Sbjct: 660  GNTP-SAFQGRIAGAKGLWMVDRHNSGISGGGDDFWIQISDSQLKIQPHPQAWRGPVDDE 718

Query: 652  HTTLEICSWTR-FQPGFLNRQIITLL---------------STLNVPDEMFWS------- 688
              T E+  W++   P  LN Q++ +L               + +    + F S       
Sbjct: 719  KLTFEVVKWSKPLHPVELNTQLLAILEHGGQVREHIAELTRAGIRAISQDFASVLESNSA 778

Query: 689  ------------MQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLS-AGFNPQTE 735
                        M D  LS +NQ +       E  TA  AE    A I L+ AGF P++ 
Sbjct: 779  ALCRSLIQKIKPMADDGLSGINQRMK----RLEQWTANDAE----AIIRLTEAGFAPRSF 830

Query: 736  PHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCF 795
              LR  L       L    ++  I VP   +     D  GVL+  +     S     N +
Sbjct: 831  YPLRRRLGRCLRDLLDRYVDELHIEVPLSTYAFCIADPYGVLKEDEVHFGFS-----NNW 885

Query: 796  SKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDR 854
                 +F +     ++ G  V++ + P   P DI+   AV   EL H  D +VFP  GD 
Sbjct: 886  RDARGQFEDN----LLDGVDVLVGRLPAHVPSDIQRRRAVWKTELRHFKDVIVFPTTGDI 941

Query: 855  PHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR-PVDQRDII---E 910
            P  +  SG D DGD  ++ WD+N++   + S  P E    E   LT+ PV  RDI    E
Sbjct: 942  PLAHMLSGGDYDGDTPWICWDQNIVQRFQNSDLPTEEYPPEHFGLTKHPVSMRDIQSTDE 1001

Query: 911  F----FAKHMVNENLG--TICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIV 964
            F    F  ++   NLG  T+ +  + + +  +     E   LL+ L    VD  K G  +
Sbjct: 1002 FLQSAFTFNLTTSNLGRCTVEHEKIAYDESIDSARAKELACLLSHL----VDGRKGGVHL 1057

Query: 965  TMPA--HLKPKLYPDFMGKEAYQSY----KSNKILGRL----YRQSKDAYDEDISVSSEV 1014
            +  A    + K+ P      AY++     K   I+  L     R+ + A  ED+  +   
Sbjct: 1058 SEQAWQQYRKKVSPKAREVPAYKNAGRKPKKTSIIDYLKFEVARKERHAVLEDLQRAFPE 1117

Query: 1015 DINPVDIHYDTDLEVP-ESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSM 1073
            D +  D   D DL  P       A+   Q  S  GQL     +Y     E L +  I S 
Sbjct: 1118 DDSVYD--RDEDLVRPWNEAQREAEIEKQGTSEHGQLRAAF-KYAEREVERLYSQWISSF 1174

Query: 1074 PKYNS 1078
               NS
Sbjct: 1175 SGENS 1179


>gi|224093866|ref|XP_002310026.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
 gi|222852929|gb|EEE90476.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
          Length = 406

 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 27/228 (11%)

Query: 653 TTLEICSWT-RFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL 711
            +LEI   + R +  FL++ +I LLS   VP+E F  + ++ L   + +L +   A  V 
Sbjct: 190 NSLEIVGTSCRPKKTFLSKNLIALLSYGGVPEEFFMGILNNALEDAHGILSNKKAALRVA 249

Query: 712 TAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCL 771
                   N  A M+  G  P  EP+L+  L+ I   +     +  +I VP   +LMG  
Sbjct: 250 LNYGDMDDNIVATMIGCGI-PLEEPYLQHHLS-ILKKEEKKSLKGGKIPVPESYYLMGTA 307

Query: 772 DELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRIL 831
           D  G+LE  +  I +      +C                + G V++ +NP LH GDI IL
Sbjct: 308 DPTGLLESDEVCIIL------DCGQ--------------VSGEVLVYRNPGLHFGDIHIL 347

Query: 832 EAVDHPELHHLYD----CLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 875
           +A    EL          + FP KG R   +E SG D DGD++FV+ +
Sbjct: 348 KATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRN 395


>gi|327301211|ref|XP_003235298.1| hypothetical protein TERG_04355 [Trichophyton rubrum CBS 118892]
 gi|326462650|gb|EGD88103.1| hypothetical protein TERG_04355 [Trichophyton rubrum CBS 118892]
          Length = 1302

 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 125/516 (24%), Positives = 198/516 (38%), Gaps = 85/516 (16%)

Query: 541  RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAME 600
            R T +  +K   R+    S T AT+ + P E    + D        SDG   ++  L   
Sbjct: 590  RNTHQEYSKLFTRIRLGLSRTTATITLRPEEF---IYDDDPRQEKMSDGCAMMSRSLGRA 646

Query: 601  VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGD----GIR---------MSLRESMNK 647
            +A  L L  +  P  +Q R AG KG+        D    G+R         + +  S  K
Sbjct: 647  IADSLCL--SKVPTCFQGRIAGAKGIWVVAKDNRDIHVKGLRHFETERGYWLVINASQLK 704

Query: 648  FQ-----------SHHTTLEICSWTRF-QPGFLNRQIITLLSTLNVPDEMFWSMQDSMLS 695
             Q            H  T ++ S+++  QP  LN Q + +L       E   S+   +L 
Sbjct: 705  VQPPPCDTSLMIDKHQLTFDVSSYSQPPQPVHLNTQFLMVLQDRGTNKEYILSL---ILE 761

Query: 696  KLNQMLVDSDVAFEVLTAACA----EQGNTAA--------------------IMLSAGFN 731
            + ++   +  +     +AAC     + G  A+                    ++L AGF+
Sbjct: 762  EADKFYSEFLLVQNGDSAACRAWVRQNGGDASSQIPALNESTFSHSLTGRLNMLLDAGFS 821

Query: 732  PQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFL 791
            P T   +R +             E  +I  P   ++    D  GVLE GQ  +      L
Sbjct: 822  PSTLAFVRRLFKEYSLGGFVQKLEALKIKTPQSTYVYCIPDPYGVLEEGQVHLD-----L 876

Query: 792  GNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQK 851
            G+ +         T  L  I   V++A+ P   P DI+   AV HP L +L +  +FP K
Sbjct: 877  GDSWEDG------TTDLDGID--VLVARAPAHLPSDIQKCRAVFHPALRYLKNVAIFPTK 928

Query: 852  GDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWP------PMEYNAAEAKTLTRPVDQ 905
            G+ P  +  SG D DGD  +V WD+ ++ P   ++P      P EY   +       +  
Sbjct: 929  GEVPLASLLSGGDYDGDEVWVCWDQEIVKPF-VNYPMPDIPEPEEYGLVKVSRRVGDMPF 987

Query: 906  RDIIEF-FAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIV 964
               +E+ F  +M    LG   N H  +  H   G      I  + L +   D  K+G   
Sbjct: 988  DRFMEYSFIFNMSQNPLGLCTNEHERYCYHRG-GIGSPLAIHFSGLLSHLADIRKSG--Y 1044

Query: 965  TMPAHLKPK----LYPDFMGKEAYQSYKSNKILGRL 996
              PA  + K    L P  +   AY++ K+ +  G L
Sbjct: 1045 EYPAENRQKYRESLGPLTLRNPAYKTDKTPEQDGDL 1080


>gi|3687226|gb|AAC62124.1| hypothetical protein [Arabidopsis thaliana]
          Length = 905

 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 113/475 (23%), Positives = 193/475 (40%), Gaps = 101/475 (21%)

Query: 579 IKRNGY--VFSDGIGKITPDLA------------MEVAQKLKLDVNPPPCAYQIRY---- 620
           + +NG   + SDG G I+ DLA            M         V  PP   QIR     
Sbjct: 398 LDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTCVQEPPLLIQIRMFNDG 457

Query: 621 AGCKGVVAC---WPAKGDGIRMSL-----RESMNKFQSHHTTLEICSWTRFQPGFLNRQI 672
           +  KG+       P +   +R S+      ++++ F + ++   + +    +   L++ +
Sbjct: 458 SAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAKLSKNL 517

Query: 673 ITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTA--ACAEQGN----TAAIML 726
           + LLS   VP++ F  +       LN +     + F+V  A  A    GN     A  M+
Sbjct: 518 VALLSYGGVPNDFFLDIL------LNTLEKKKTIFFKVRAAGKAALHYGNMDDKNALQMI 571

Query: 727 SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQV 786
            AG  P  EP+L+  L+ +   +   L+   ++ +    +LMG +D  G L+  +     
Sbjct: 572 MAGI-PLDEPYLKHYLSKLLKLEKDDLK-AGKLPIDESYYLMGTVDPTGELKEDE----- 624

Query: 787 SEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD-- 844
                                       V +  NP LH GDI IL+A     L       
Sbjct: 625 ----------------------------VCVILNPGLHFGDIHILKATYVKSLEQYVGNS 656

Query: 845 --CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPME-------YNAAE 895
              + FPQKG R   +E +G D DGD+YF++ +  L+   K S P +        Y   +
Sbjct: 657 KYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQ 716

Query: 896 AKTLTRPVDQRDIIEFFAKHMVNEN--LGTICNAHVVHADHSEYGAL-DENC-------- 944
              L+    + ++ + F K   + +  +G   ++ +   D   +  L DEN         
Sbjct: 717 PSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMD--RFLTLGDENVKEKAEMKK 774

Query: 945 --ILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLY 997
             + L ++   A+D PKTG  V +P  +K  L+P +M  E  +++KS  ILG ++
Sbjct: 775 KMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYM--ERNKTFKSTSILGLIF 827


>gi|302501841|ref|XP_003012912.1| RNA-directed RNA polymerase, putative [Arthroderma benhamiae CBS
           112371]
 gi|291176473|gb|EFE32272.1| RNA-directed RNA polymerase, putative [Arthroderma benhamiae CBS
           112371]
          Length = 1125

 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 126/519 (24%), Positives = 189/519 (36%), Gaps = 95/519 (18%)

Query: 427 PPEVELSNRVLRKYKDLADRFLRVTF--------------MDEGLQTMNANVLSYFIAPI 472
           P ++E S+R  R+Y   ADRFL V                  + L    +N   Y +   
Sbjct: 186 PLKLEKSHRFARRYG--ADRFLEVLLPSKHPTKSGRDAEIFGKALGKWLSNEYHYLLGRR 243

Query: 473 VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSED----- 527
            R   L     K++         +  F   GRK    A          +     D     
Sbjct: 244 WRAFYLEDLKSKSK---------TTSFSGSGRKAFLFAVDGEDFLGTPSGISPMDETSEN 294

Query: 528 -GKTSVLDIKKW---MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG 583
               +V  +  W     R T +  +K   R+    S T AT+ + P E    + D     
Sbjct: 295 HAPMTVEQLVDWHIHYARNTHQEYSKLFTRIRLGLSRTTATITLRPEEF---IYDDDPRQ 351

Query: 584 YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGD------GI 637
              SDG   ++  L   +A  L L  +  P  +Q R AG KG+     AK D      G+
Sbjct: 352 EKMSDGFAMMSRSLGRAIADSLCL--SKVPTIFQGRIAGAKGIWLV--AKDDQDIHVKGL 407

Query: 638 R---------MSLRESMNKFQSHHT----TLEICSWTRF-QPGFLNRQIITLLSTLNVPD 683
           R         + +  S  K Q        T ++ S+++  QP  LN Q + +L    V  
Sbjct: 408 RNFETERGYWLVINASQLKVQPPPLVILLTFDVSSYSQPPQPVHLNIQFLMVLQDRGVNK 467

Query: 684 EMFWSMQDSMLSKLNQ--MLV-----------------DSDVAFEVLTAACAEQGNTAAI 724
           E   S+      K     +LV                 D+      L  +     +TA +
Sbjct: 468 EYILSLIPDEADKFYSEFLLVQNGDPVACRAWVRKNGGDASSQIPALNESTFPTNHTAQL 527

Query: 725 --MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQC 782
             +L AGF+P     +R +             E  +I +P   ++    D  GVLE GQ 
Sbjct: 528 NGLLDAGFSPSNLAFVRRLFKENSLGGFVQKLEALKIKIPQSTYVYCIPDPYGVLEEGQI 587

Query: 783 FIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
            +      LG+ +         T  L  I   V++A+ P   P DI+   AV HP L +L
Sbjct: 588 HLD-----LGDSWEDG------TTDLDGID--VLVARAPAHLPSDIQKCRAVFHPALRYL 634

Query: 843 YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
               +FP KGD P  +  SG D DGD  +V WD+ ++ P
Sbjct: 635 KHVAIFPTKGDVPLASLLSGGDYDGDEVWVCWDQEIVKP 673


>gi|358369575|dbj|GAA86189.1| RNA-directed RNA polymerase [Aspergillus kawachii IFO 4308]
          Length = 1306

 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 188/470 (40%), Gaps = 75/470 (15%)

Query: 549  KCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLD 608
            K   R     S TYATV + P +V P LPD+ +   V +DG   ++  LA ++   L L 
Sbjct: 593  KLFQRFSLALSKTYATVVLHPRQVLP-LPDVSKP--VMNDGCALMSRSLANQICDSLGL- 648

Query: 609  VNPPPCAYQIRYAGCKGVVACWPAKG-----DGIRMSLRESMNKFQSH-----------H 652
                P A+Q R AG KG+      +      D + + + +S  K + H            
Sbjct: 649  TGYTPSAFQGRIAGAKGLWMVDKHRSHVTADDDVWIQISDSQLKIRPHPHEWDGSVDDEK 708

Query: 653  TTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQD-------SMLSKLNQML-VDS 704
             T E+  W++  P     Q I LL+ L+    +   + D       S+  +   +L  DS
Sbjct: 709  LTFEVVKWSK--PLHPVNQTIQLLNILDHGGHIRGHLADLTRLGIQSLYQEFADVLESDS 766

Query: 705  DVAFEVLTAACAEQG-------------------NTAAIML---SAGFNPQTEPHLRGML 742
             V    L       G                   N A  ++    AGF P++   LR  L
Sbjct: 767  AVLCRSLVQKIRPSGDDGFGRVSQRTWRFENWMSNDAEFIIRLTEAGFCPRSFHFLRKRL 826

Query: 743  -TCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSR 801
              C+R   L    ++ RI VP   +     D  GVL+  +     S     N +     +
Sbjct: 827  GKCLREL-LKRHVDELRIEVPLSTYAFCIADPYGVLKEDEVHFGFS-----NVWRDGKGQ 880

Query: 802  FAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEA 860
            F +     ++ G  V++ + P   P DI+   AV   EL H  D +VFP  G+ P  +  
Sbjct: 881  FEDI----LLDGIDVLVGRLPAHLPSDIQRRTAVWKQELRHFKDVIVFPSVGNIPLAHML 936

Query: 861  SGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR-PVDQRDI--IEFFAKHMV 917
            SG D DGD  ++ WD+N++     S  P      E   LT+  VD +DI  ++ F +   
Sbjct: 937  SGGDYDGDTPWICWDQNIVRNFYNSGLPDTEFPPEHYGLTKYAVDMKDIQSMDEFLQSSF 996

Query: 918  NENLGTICNAHVVHADHSEYGALDENCI------LLAELAATAVDFPKTG 961
              NL T+ N      +H E  A DE  I       LA L +  VD  K G
Sbjct: 997  TFNL-TLSNLGRCTVEH-EMIAYDEESIDSDKAKELACLLSHLVDGRKAG 1044


>gi|402074256|gb|EJT69785.1| RNA-dependent RNA polymerase [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1442

 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 111/470 (23%), Positives = 193/470 (41%), Gaps = 77/470 (16%)

Query: 549  KCAARMGQCFSSTYATVEVPPTEVDPELPDI-KRNGYVFSDGIGKITPDLAMEVAQKLKL 607
            K  +R+    S TY TV   P ++  +  D+    G V +DG+G ++  +A ++ + L L
Sbjct: 694  KLFSRIALGLSPTYPTVTFEPHQIRAQAKDLLSPQGNVMNDGVGLMSRSVAQKIQKTLGL 753

Query: 608  DVNPPPCAYQIRYAGCKGV-------------VACWPAK-------GDGIRMSL--RESM 645
               P  CA Q R    KG+             +  +P++       GD  + +L  R   
Sbjct: 754  VTVP--CAVQGRLGSAKGMWIIDVEDLSGEDWIETYPSQRKWECDIGDPDQRTLEVRSHA 811

Query: 646  NKFQSHHTTLEIC----SWTRFQPGF-----------LNRQIITLLSTLNVP-DEMFWSM 689
            ++ +S    L+        +R +  F           L  ++  L + LN P     W  
Sbjct: 812  SELRSARLNLQFLPVLEDRSRDKDAFRTAVGDLLGENLQTELGGLRAALNRPIQHRQWVH 871

Query: 690  QDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQ 749
            ++S  S  +  +    V F  L  +  +      +ML  GF+P+ + +L+ +   ++  +
Sbjct: 872  ENS--SNRDTRVRHGQVPF--LGGSPDKDEELMNMMLDHGFDPKKQKYLQDLAWVLQKKK 927

Query: 750  LWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSK--HGSRFAETKK 807
               L+EK  I V    +    +D  G LE  +  +         CFS       FA+T  
Sbjct: 928  CETLKEKLNITVGKSAYAYMVVDFGGHLEPDEVHM---------CFSSKFQVDDFADT-- 976

Query: 808  LQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLD 866
              ++ G  +++A++P  +  DI+ ++AV  P L  L D +VFP+KG     ++ SG D D
Sbjct: 977  --LLDGIELLVARSPAHYISDIQKVKAVFKPALKDLKDVIVFPRKGRVALADKLSGGDYD 1034

Query: 867  GDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRD---------------IIEF 911
            GD  +V WD+ ++     S  P   +  E   L++  D+ D               I   
Sbjct: 1035 GDKAWVCWDQAIVKNFVNSPVPRAPDLFERGYLSKIKDKMDDLVKEHGLETATSELIERS 1094

Query: 912  FAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
            F  +M   +LG IC        +      D+  +LL+ L +  VD  K G
Sbjct: 1095 FLFNMRQNHLG-ICTNFKERLCYKRRNVYDDCAVLLSTLLSNLVDQSKQG 1143


>gi|336268466|ref|XP_003348998.1| hypothetical protein SMAC_02019 [Sordaria macrospora k-hell]
 gi|380094257|emb|CCC08474.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1403

 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 154/369 (41%), Gaps = 51/369 (13%)

Query: 549  KCAARMGQCFSSTYATVEVPPTEVDPELPDI---KRNGYVFSDGIGKITPDLAMEVAQKL 605
            K  +R+    S TYA + + P ++     DI        V +DG+G+++  +A ++   L
Sbjct: 668  KLFSRIQLGLSKTYAIMTLEPHQIIHHKSDILSPSGTDEVMNDGVGRMSRSVAKKIRDVL 727

Query: 606  KL-DVNPPPCAYQIRYAGCKGV-VACWPAKGDGIRMSLRESMNKFQ-----SHHTTLEIC 658
             L DV   P A Q R+   KG+ V      GD   +    S  K++      H  TLE+ 
Sbjct: 728  GLGDV---PSAVQGRFGSAKGMWVIDVNDMGDDDWIETYPSQRKWECDFVDKHQRTLEVR 784

Query: 659  S-WTRFQPGFLNRQIITLLSTLNVPD-EMFWSMQDSMLSKLNQMLVDSDVAFE------- 709
            S  +  +   LN Q++ +L    +   +M  ++ D +++ L +   +   A         
Sbjct: 785  SVASELKSAGLNLQLLPVLEDRAMDKVKMRQAIGDRLVNDLQRQFSEQKHALNRPVEFRQ 844

Query: 710  -------------------VLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQL 750
                                L      Q  T   ++++GF+P+ +  L+ +   ++  + 
Sbjct: 845  WVYESYSTRATRVSHGRVPFLAGLPDSQEETLNYLMNSGFDPKKQKFLQDIAWDLQKRKC 904

Query: 751  WGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
              L+ K  I V    ++    D   VLE  +  +  S  F          R  E     +
Sbjct: 905  DTLKSKLNIRVGRSAYIYMIADFWDVLEENEVHVGFSSKF----------RDEEESFTLL 954

Query: 811  IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
                V++A++P   P DI+ + AV  PELH L D ++F  KGD P   + SG D DGD+ 
Sbjct: 955  SDCDVLVARSPAHFPSDIQRVRAVFKPELHMLKDVIIFSTKGDIPLAKKLSGGDYDGDMA 1014

Query: 871  FVTWDENLI 879
            +V WD  ++
Sbjct: 1015 WVCWDPEIV 1023


>gi|238597177|ref|XP_002394255.1| hypothetical protein MPER_05887 [Moniliophthora perniciosa FA553]
 gi|215462994|gb|EEB95185.1| hypothetical protein MPER_05887 [Moniliophthora perniciosa FA553]
          Length = 279

 Score = 83.6 bits (205), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 108/220 (49%), Gaps = 23/220 (10%)

Query: 811  IKGFVVIAKNPCLHPGDIRILEAVDHPE------LHHLYDCLVFPQKGDRPHTNEASGSD 864
            ++G   I+++P  HPGD++ + A+  P         H+ + +V P +G R   ++  G D
Sbjct: 10   LEGRCTISRSPVAHPGDVQTVHAIGKPPTDKLCLFAHMKNVVVLPSRGKRSLASKLGGGD 69

Query: 865  LDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLT--RPVDQRDIIEFFAKHMVNENLG 922
            LDGDLY V     L PP      PM Y A E  TL   R V+ RDI +F   ++ ++ LG
Sbjct: 70   LDGDLYDVITYPELQPPLDNK--PMSYEAGETLTLKEDRTVEPRDICDFIVNYINSDVLG 127

Query: 923  TICNAHVVHADHSEYGALDENCILLAELAA----TAVDFPKTGKIVTMPAHLKP----KL 974
             + +  +V AD S+ G  D +C  LA+L +     AVD+PK G  V +     P    + 
Sbjct: 128  LLSDRLLVIADQSKDGIYDRDCEKLAKLCSQTTYQAVDYPKNGIPVDLDKDRLPNTLIRC 187

Query: 975  YPDFMGKEAYQS-----YKSNKILGRLYRQSKDAYDEDIS 1009
             PD+   E         Y S + LG ++R+ + A   DI+
Sbjct: 188  KPDWHAAEVVDPRGTDYYMSTRALGEMFRKVRLAEPTDIA 227


>gi|326475512|gb|EGD99521.1| hypothetical protein TESG_06788 [Trichophyton tonsurans CBS 112818]
          Length = 1298

 Score = 83.6 bits (205), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 126/526 (23%), Positives = 192/526 (36%), Gaps = 102/526 (19%)

Query: 427 PPEVELSNRVLRKYKDLADRFLRVTF--------------MDEGLQTMNANVLSYFIAPI 472
           P ++E S+R  R+Y   ADRFL +                  + L    +N   Y I   
Sbjct: 460 PLKLEKSHRFARRYG--ADRFLEILLPSKHPSKSGRDAEIFGKALGKWLSNEYHYLIGRR 517

Query: 473 VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSS----SQLRDCSAWFFSEDG 528
            R   L     K++         +  F   GRK    A         L   S    + + 
Sbjct: 518 WRAFYLEDLKSKSK---------ANSFSGSGRKAFLFAVDGEDFLGTLPGISPMDETSEN 568

Query: 529 KT--SVLDIKKW---MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG 583
            T  +V  +  W    GR T +  +K   R+    S T AT+ + P E    + D     
Sbjct: 569 HTPMTVEQLVDWHIHYGRNTHQEYSKLFTRIRLGLSRTTATITLRPEEF---IYDDDPRQ 625

Query: 584 YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGD------GI 637
              SDG   ++  L   +A  + L  +  P  +Q R AG KGV     AK D      G+
Sbjct: 626 EKMSDGFAMMSRSLGRAIADSICL--SKVPTCFQGRIAGAKGVWVV--AKDDQDIHVKGL 681

Query: 638 R---------MSLRESMNK-----------FQSHHTTLEICSWTR-FQPGFLNRQIITLL 676
           R         + +  S  K           F  H  T ++ S+++  QP  LN Q + +L
Sbjct: 682 RHFETERGYWLVINASQLKVQPPPCDTSLMFDKHQLTFDVSSYSQPPQPVHLNTQFLMVL 741

Query: 677 STLNVPDEMFWSMQDSMLSKL-NQMLVDSDVAFEVLTAACAEQGNTAA------------ 723
                  E   S+      K  ++ L+  +       A   + G  A+            
Sbjct: 742 QDRGTNKEYILSLIPEEADKFYSEFLLVQNGDSAACRAWVRQNGGDASSQIPALNESTFP 801

Query: 724 --------IMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELG 775
                   + L AGF P     +R +             E  +I +P   ++    D  G
Sbjct: 802 PSRTVQLNMFLDAGFLPSNLAFVRRLFKENFLGVFVQKLEALKIKIPKSTYVYCIPDPYG 861

Query: 776 VLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVD 835
           VLE GQ  +      LG+ +         T  L  I   V++A+ P   P DI+   AV 
Sbjct: 862 VLEEGQIHLD-----LGDSWEDG------TTDLDGID--VLVARAPAHLPSDIQKCRAVF 908

Query: 836 HPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
           HP L +L +  +FP KG+ P  +  SG D DGD  +V WD+ ++ P
Sbjct: 909 HPALRYLKNVAIFPTKGEVPLASLLSGGDYDGDEVWVCWDQEIVKP 954


>gi|391343490|ref|XP_003746042.1| PREDICTED: uncharacterized protein LOC100901929 [Metaseiulus
            occidentalis]
          Length = 1356

 Score = 83.6 bits (205), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 150/658 (22%), Positives = 277/658 (42%), Gaps = 78/658 (11%)

Query: 503  GRKFSFLAFSSSQLRDCSAWFFS-EDGKT-SVLDIKKWMGRFTDKNIAKCAARMGQCFSS 560
            G+ + FL  S SQ  D S W ++ E G T ++  +++ +G     N+A+  A     F+ 
Sbjct: 456  GKTYYFLGNSKSQAEDFSFWAYAIEKGDTDTISSVRERLG--ITGNLARRIAVQDLVFAE 513

Query: 561  TYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRY 620
                V + P+ V  E  D+      F  GIG+I+      V +           A ++ +
Sbjct: 514  ALGAVSIDPSWVSEESEDVP-AASDFKHGIGRISEAALRTVVENCHWS-RTLCSAIRVVH 571

Query: 621  AGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLN 680
             G +G +   P+  +G R+  R+S    +S  +TL +   +  +    +R  I+ LS+  
Sbjct: 572  GGRRGTLVYDPSL-EGSRIIYRKSQTVIKSEDSTLYLIERSEIKNAAFDRTFISTLSSKA 630

Query: 681  VPDEMFWSMQDSMLSKLNQMLVD-----------SDVAFEVLTAACAEQGNTAAIMLSAG 729
                  +S++D  L+ L ++L +             VA E +      +G         G
Sbjct: 631  DGLTEEFSVED-FLTPLYELLTEPLSLYSTGARVKRVAAEPVLDHIFREGEDLY-----G 684

Query: 730  FNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEP 789
            ++ + +   R  + C     L  L+ K +  +     +M  +DEL +LE G+ FIQV  P
Sbjct: 685  YDKRGDGLFRQAVRCKALKALRDLK-KLKQHMTNAYEIMPVVDELELLEEGEVFIQVCSP 743

Query: 790  FLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE----LHHLYDC 845
                              L+V+ G +V+A+   +H  + R + AV+ P+    L HL++C
Sbjct: 744  ---------------GGDLRVLSGDLVLARKDAMHLEEFRRVTAVNRPDVVGALGHLFNC 788

Query: 846  LVFPQK-GDRPHTNEASGSDLDG--DLYFVTW--DENLIPPSKKSWPPMEYNAAEAKTLT 900
            +V P K G RP    A  +   G  D+  +    DE      K++ PP   + A    + 
Sbjct: 789  VVLPSKGGSRPLEFLAREASYAGESDIILIASHPDEEPAFLFKRNDPPRSTSIAVGPAVD 848

Query: 901  RPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKT 960
                  DI   F  ++   +           AD+    A  E+CI           + + 
Sbjct: 849  SGC---DIETHFFNYLSYVSFNDFEEVFCALADYLPQHASSESCIRAGAQQRLLDKYRRG 905

Query: 961  GK-IVTMPAHLKPKLYPDFMGKEA-YQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP 1018
            G+    +P  +K   +P F+ K +  ++Y S + L  +Y++ +     D     E  +  
Sbjct: 906  GREGAPLPKVVK---FPHFLEKISDGKTYCSTRPLAHIYQKGRAI---DTKYFEETLMMT 959

Query: 1019 VDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWS-MPKYN 1077
             D+ +  +L+V  S  F   A     S+  +L G+   ++++  +E++TG I+S   +Y+
Sbjct: 960  DDVTFQPELQVEGSQVFAEVAERDMRSFKRELGGIAALHEIS-VDEVLTGTIFSNRGQYS 1018

Query: 1078 SRK-----QGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWY 1130
            S +     +  +K ++KH     R+ F++  EK  S+ E+L          +K SA+Y
Sbjct: 1019 SSERRSNIEATVKLQVKHLALICRRRFKKGVEKA-SEVEVL----------QKISAYY 1065


>gi|46124253|ref|XP_386680.1| hypothetical protein FG06504.1 [Gibberella zeae PH-1]
          Length = 1372

 Score = 83.6 bits (205), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 146/649 (22%), Positives = 245/649 (37%), Gaps = 135/649 (20%)

Query: 427  PPEVELSNRVLRKYKDLADRFLRVTF------------------MDEGLQTMNANVLSYF 468
            PP +EL +R+ R++   ADRF+ +                     D+ +  +N N L YF
Sbjct: 517  PPRLELGHRLARRFG--ADRFMEIIIPSPTSRDAPEIIRSDEQGADKVIGWLNDN-LHYF 573

Query: 469  IA---PIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFS 525
            +    P  + IT+     + RV+    +I    F L   +F  L  ++S           
Sbjct: 574  LGHPRPPHKSITI----MQERVY--FFAIDGNNFRLPENRFPALEEATS---------LE 618

Query: 526  EDGKTSVLDIKKW---MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRN 582
               K    DI KW   +     + + K  +R+    S T  TV + P +       +  +
Sbjct: 619  YRTKMRRSDILKWAIDVEANAFQPVPKLFSRLALSLSKTCPTVVLEPHQFRHRDTMLGFH 678

Query: 583  GYVFS----------DGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGV------ 626
             Y+ S          DGI +++  LA  V+  + L +   PCA+Q R    KG+      
Sbjct: 679  KYMSSRDREEQKDMGDGIARMSRGLARRVS--IHLGLLETPCAFQARIGSAKGMWIVDVE 736

Query: 627  ---------VACWPAKGDGIRMSLRESMNKFQS-HHTTLEICSWTR-FQPGFLNRQIITL 675
                     +  +P++        R+   +F+  HH T E+  W+R  +   LN Q I +
Sbjct: 737  DDGLDDDVWIETYPSQ--------RKWECEFEDVHHRTFEVREWSRELKSASLNTQFIPV 788

Query: 676  LSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEV--LTAACAEQGNT------------ 721
            L     P+    SM++ + + L   L D D+  ++  +T   + +G T            
Sbjct: 789  LEA-QAPNPN--SMRNVIANHLANGLQD-DIGGQLAAMTHPTSLRGWTHRGFDRSSLGRV 844

Query: 722  -------------AAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLM 768
                          + ML AGF+      LR ++   +  Q   L+ K  I +P   +  
Sbjct: 845  PFVGGLPDHDDDIVSFMLDAGFDATKCRFLRDLVWNNQKRQAEQLKAKMNIKIPRSAYAF 904

Query: 769  GCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDI 828
              +D  G LE G+  +  S  F  +          E+  L +    +++A+ P     D+
Sbjct: 905  MVVDFTGTLEEGEVQLAFSSKFQAD---------GESDTL-LDDIDILVARAPAHFVSDV 954

Query: 829  RILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPP 888
            + + AV  P L  L D +VF  KG  P  +  SG D DGD  +V WD +++     +  P
Sbjct: 955  QKVRAVFRPNLKRLKDVIVFSSKGKSPLADMLSGGDYDGDQAWVCWDPDIVRNFSNASKP 1014

Query: 889  ME-----------YNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGT----ICNAHVVHAD 933
             E            N +    L    D       F +  ++ N+      I         
Sbjct: 1015 AEPDLVKQGYLRKSNPSFQSILETTPDMESACTDFLRSAISFNMQPTYLGIATKFKEKLC 1074

Query: 934  HSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKE 982
            + E G   E  + L+ L A  VD  K G + T   + + K   +  GKE
Sbjct: 1075 YLEGGVNSERAVALSTLVALLVDQAKQGLLFTRGDYDRLKRDMEMRGKE 1123


>gi|405952890|gb|EKC20647.1| Putative RNA-dependent RNA polymerase 2 [Crassostrea gigas]
          Length = 266

 Score = 83.2 bits (204), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 68/109 (62%), Gaps = 5/109 (4%)

Query: 606 KLDVNPPPCAYQIRYAGCKGVVACWPAKG-DGIRMSLRESMNKFQSHHTTLEICSWTRFQ 664
           KL ++P P A+QIR+ GCKG+VA  P  G D   + +R+SM KF+S    LEI   T   
Sbjct: 129 KLQIHPVPSAFQIRFGGCKGMVAQDPTLGNDTDILVIRKSMKKFESKSNNLEILDVT--G 186

Query: 665 PG--FLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVL 711
           PG  +LN+Q+ITLLS L + D +F ++Q++ML  +  +L+   +A   L
Sbjct: 187 PGRLYLNKQVITLLSGLGIQDHVFLNLQENMLVDIADILLYDHLALPAL 235


>gi|115435090|ref|NP_001042303.1| Os01g0197900 [Oryza sativa Japonica Group]
 gi|56201770|dbj|BAD73220.1| unknown protein [Oryza sativa Japonica Group]
 gi|56201877|dbj|BAD73327.1| unknown protein [Oryza sativa Japonica Group]
 gi|113531834|dbj|BAF04217.1| Os01g0197900 [Oryza sativa Japonica Group]
          Length = 387

 Score = 83.2 bits (204), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 28/230 (12%)

Query: 813  GFVVIAKNPCLHPGDIRILEAVDHPELHHLY-----DCLVFPQKGDRPHTNEASGSDLDG 867
            G V++ K+P LH GDI +L+A    +L   Y       ++FP  G R   +E + SD DG
Sbjct: 26   GDVLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDG 85

Query: 868  DLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVD------QRDIIEFFAKHMVNEN- 920
            D+Y+V+ +  L+   K S P ++    +     +P D      +R +   F K     + 
Sbjct: 86   DIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPSF 145

Query: 921  -LGTICNAHVVHADHSEYGALDE--------NCILLAELAATAVDFPKTGKIVTMPAHLK 971
             LGT  ++ + + D     +LDE          + L +L   A+D PKTG  V +P+ L 
Sbjct: 146  ALGTAADSWLAYMDRLLTDSLDEIEKKLIEEKMLKLVDLYYLALDAPKTGNKVNIPSDLM 205

Query: 972  PKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDI 1021
             K YP FMG+    SY S+ ILG++Y ++     ED+      ++ P+ +
Sbjct: 206  VKQYPHFMGRSF--SYHSSSILGQIYDKA-----EDVESLRSCNVQPIGV 248


>gi|258570921|ref|XP_002544264.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237904534|gb|EEP78935.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1348

 Score = 83.2 bits (204), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 115/463 (24%), Positives = 176/463 (38%), Gaps = 79/463 (17%)

Query: 549  KCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQKLK 606
            K   R+    S T  TV V P  +      ++R     V +DG   ++  LA E+   L 
Sbjct: 655  KLFQRLSLALSRTIPTVVVRPGRI------VRRKDAEIVMNDGCALMSASLANEIKSCLG 708

Query: 607  LDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR-MSLRESMNKFQSH-----------HTT 654
            L    P C +Q R AG KG+     A  +G   + + +S  K + H             T
Sbjct: 709  LKDENPSC-FQGRIAGAKGIWMVDNADSNGDSWIEISDSQLKIKPHPSKCKIMLDDYQLT 767

Query: 655  LEICSWTR-FQPGFLNRQIITLLSTLNVPDEMF----------W------SMQDSMLSK- 696
             E+ SW+R  +P  LN Q++ +L    V  +            W      ++ + ++S+ 
Sbjct: 768  FEVVSWSRELRPVNLNVQLLMVLQHGGVQTDRLKELVRRESSAWYADFKNTITNEIVSRG 827

Query: 697  --LNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLT------CIRAA 748
                Q L D      +      E    A ++L +GF+P    +L+ +LT      C R  
Sbjct: 828  WIQKQGLYDRRKTRRI-DDFPTENAEQAILLLDSGFHPLRLAYLKELLTTFLKDYCNRLD 886

Query: 749  QLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKL 808
             L       +I +P   +     D   VL   +     S+P+             E+   
Sbjct: 887  SL-------KIRIPESTYAYCIADPYEVLAEDEVHFGFSKPW-------------ESYGY 926

Query: 809  QVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDG 867
              + G  V++ +NP   P DI+   AV   EL H  D +VFP  G  P     SG D DG
Sbjct: 927  TDLDGVDVLLGRNPAHLPNDIQKRRAVFKKELRHFKDVIVFPTVGKVPLAGMLSGGDYDG 986

Query: 868  DLYFVTWDENLI------PPSKKSWP-PMEYNAAE-AKTLTRPVDQRDII-EFFAKHMVN 918
            D  +V WD  L+      P   +  P P E+     ++ L  P D  + + + F  +   
Sbjct: 987  DQVWVCWDPELVNTFINTPFEPEKVPEPHEFGLVSCSEKLKEPFDFNEFLTKVFVFNAAP 1046

Query: 919  ENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
              LG   N H     + E G      I L+ L     D  KTG
Sbjct: 1047 SLLGHCTNEHEKLC-YYENGIASPGAIQLSHLLGHLADVRKTG 1088


>gi|451994085|gb|EMD86556.1| hypothetical protein COCHEDRAFT_1034368 [Cochliobolus heterostrophus
            C5]
          Length = 158

 Score = 83.2 bits (204), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 83/152 (54%), Gaps = 11/152 (7%)

Query: 911  FFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHL 970
            FF  ++ N+ LG I +AH+  AD +E G  D  C+ LAEL + AVDFPK+G    M   L
Sbjct: 4    FFVNYIKNDALGPIAHAHLAQADFNENGVGDPICLELAELHSRAVDFPKSGIPAEMKREL 63

Query: 971  KPKLYPDFMGKE---AYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDL 1027
            +PK +P FM K+    +Q YKS KILG LY + K   D +    ++ D   ++  +D D 
Sbjct: 64   RPKKWPHFMEKKYLSQHQIYKSKKILGLLYDEVK-LIDFEPQWENQFDKRILEA-FDLDQ 121

Query: 1028 EVPESVDFIADAWNQKCSYDGQLNGLLEQYKV 1059
            E+      +  A + K SYD  L  L+ ++ +
Sbjct: 122  EL------LDKAASLKLSYDEALRPLMAKHGI 147


>gi|119370384|gb|ABL68089.1| putative RNA-directed RNA polymerase 2 [Nicotiana attenuata]
          Length = 108

 Score = 83.2 bits (204), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 51/111 (45%), Positives = 70/111 (63%), Gaps = 9/111 (8%)

Query: 551 AARMGQCFSSTYATVEV--PPTEVDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQKLK 606
           AARMGQ FS+++ T+EV  P  E+ P++ ++  +G  Y FSDGIGKI+   A +VAQK  
Sbjct: 1   AARMGQLFSTSFQTMEVQSPHVEILPDI-EVTSDGVSYCFSDGIGKISQAFASQVAQKCG 59

Query: 607 LDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEI 657
           L   P   A+QIRY G KGV+A    +    ++SLR SM KF+S +  L I
Sbjct: 60  LSYTPS--AFQIRYGGYKGVIAV--DRNSFRKLSLRGSMLKFESKNRMLNI 106


>gi|343429506|emb|CBQ73079.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
          Length = 1287

 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 173/429 (40%), Gaps = 57/429 (13%)

Query: 725  MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI 784
            ML +GF+P+   +L  +L  I A  +  + ++  I V      M   D  G LE G+   
Sbjct: 731  MLLSGFHPEKCAYLADLLVEIAALAMSKVIKRFAIPVARSAEAMVIPDPTGTLEEGEIQF 790

Query: 785  QVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD 844
            +    F  +      +R   T    V +G V++ ++PCL P DIR + AV  PEL    D
Sbjct: 791  R----FSSDNIVDPDTRLRLT---HVPEGQVLVTRHPCLLPTDIRKVRAVVRPELSLYKD 843

Query: 845  CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS---WPPMEYNAAEAKTLTR 901
             +VF  KG RP  +  SG D DGDL  V W+  L+ P + +   +    +N  +    TR
Sbjct: 844  VVVFSTKGKRPLASLLSGGDYDGDLIRVFWEPKLVEPFENADVRFADCPFNVDD--VFTR 901

Query: 902  PVDQRDIIEFFAKH-----------MVNENL---------GTICNAHVVHADHSEYGALD 941
              +++ + EF A+H           ++ E +         G     H+  A   ++G   
Sbjct: 902  --NEKTVAEFVAEHKDKHKDERDRELIKELVVGAFDPQVRGLYGTMHLYAA--WQFGTRS 957

Query: 942  ENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSK 1001
               + LA      +D PKTG        LKP++       E Y        LG L + + 
Sbjct: 958  AEAVELAHKFCHCMDGPKTGLT------LKPRVR--ITDSELY--------LGELPKWAT 1001

Query: 1002 DAYDE-DISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQY--K 1058
            D  DE D     EV+     +    +   PESV  +   W++  +  G L   L++   K
Sbjct: 1002 DVKDEWDAKDWFEVESKNHSVKARKNASRPESV--LCALWSEGKTETGLLKARLQKQTEK 1059

Query: 1059 VNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEK 1118
            +   E+     +W   +   R   E+KE ++       + + +   +     E    D++
Sbjct: 1060 LRGVEDTDLSGVWREAERLERVSKEVKEAIRTHVKVAEESYARTNARTRQTIEAEQRDKR 1119

Query: 1119 NALFERKAS 1127
            N     K S
Sbjct: 1120 NGKATSKNS 1128



 Score = 47.4 bits (111), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 18/128 (14%)

Query: 586 FSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR------- 638
            +DG G ++  +A ++AQ L  D  P   A+Q R AG KGV    PA    +        
Sbjct: 513 MTDGAGCVSLAVARDIAQHLGYDSIP--SAFQGRVAGAKGVWYIDPAAERTLPNEKPVRW 570

Query: 639 MSLRESMNKFQS--------HHTTLEICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSM 689
           + +R+S NK Q             +++   +R F P  L+RQII +L +  VP   F  M
Sbjct: 571 IEIRDSQNKIQYPQDKPLDLSQLVVDLLGPSRTFAPSTLSRQIILVLQSNGVPISTFADM 630

Query: 690 QDSMLSKL 697
           Q + L  +
Sbjct: 631 QRAELQAI 638


>gi|226287106|gb|EEH42619.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1366

 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 179/775 (23%), Positives = 279/775 (36%), Gaps = 156/775 (20%)

Query: 399  ELYKGPKQIDDIVEVR-RLVITPTKAY----CLPPEVELSNRVLRKYKDLADRFLRVTF- 452
            E+Y+  +   D+V +  +L     K Y      P + E S R  R++   +DRFL +TF 
Sbjct: 468  EMYEDKRSTGDVVTLSGKLSWCKRKGYFDLSLNPLKFERSYRFCRRFG--SDRFLEITFP 525

Query: 453  ------------------MDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSI 494
                              + E +    AN   + +  + R   L    +K++   R   I
Sbjct: 526  VLTSPPSRLARDTEERGILLEAISRWLANSEHHLLGRVWRSFYLEDVKEKSKRTPRKNGI 585

Query: 495  LSGGFYLCGRKFS---FLAFSSSQLRDCSAWFFSED------GKTSVLDIKKWMGRFTD- 544
                    G K S     A + +   + +     +D       K S+  +  W     D 
Sbjct: 586  KMSPELETGSKRSRVFMFAINGTDFGESTMGIPLQDQTSGNRTKMSIDALINWHMPIADN 645

Query: 545  --KNIAKCAARMGQCFSSTYATVEVPPTEVD--PELPDIKRNGYVFSDGIGKITPDLAME 600
              ++  K   R+    S T +TV +   EV   P+ P     G V +DG   ++  L +E
Sbjct: 646  IHQSDCKLFQRLALGLSRTLSTVVLRREEVIFCPDPP-----GPVMNDGCALMSRSLGLE 700

Query: 601  VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR---------MSLRESMNKFQSH 651
            +  K  LD+   P  YQ R +G KG+   W    D  R         + + ES  K    
Sbjct: 701  I--KRILDLETLPACYQGRISGAKGI---WMVDRDDSRFKGGDRDFGLEITESQLKISYP 755

Query: 652  HT--------------TLEICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSK 696
            H               T E+  W++   P  LN Q++ +L    V       +    +S 
Sbjct: 756  HGPPHNPRLVADNTQLTFEVVQWSQPLNPSSLNLQVLKVLQHGGVGHSHIKKLIQQEVSI 815

Query: 697  -----LNQMLVDSDVAFEVLTAACAEQGN----------------------TAAIMLSAG 729
                 L  + + + VA           G+                       A ++L +G
Sbjct: 816  FYKEFLKVIHLSNGVACRKWLQKMKRFGDDGYSYKRQTRRIDNFFPSQYVEQAVLLLDSG 875

Query: 730  FNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEP 789
            F P   P+L  +   I    L  LR K ++ V    +     D LGVL   +     S  
Sbjct: 876  FLPLKLPYLTQLFRRILKDYLDSLR-KLKVSVSQSTYAYCIADPLGVLSPDEVHFGFSHK 934

Query: 790  FLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFP 849
            +        GS    T   ++    V++A+ P   P DI+   AV   EL H  D +VFP
Sbjct: 935  W------DDGSVVVGT---ELHDMNVLVARLPAHLPTDIQKRRAVYKNELRHFKDVIVFP 985

Query: 850  QKGDRPHTNEASGSDLDGDLYFVTWDENLIPP-SKKSWPPMEYNAAEAKTL---TRPVDQ 905
              GD P  +  SG D DGD  +V WD  ++   S   + P    ++E   L   + P++Q
Sbjct: 986  TTGDVPLASLLSGGDYDGDQCWVCWDPIIVREFSNSHFDPTTIPSSEQLGLVCHSLPMNQ 1045

Query: 906  -RDIIEFFAK----HMVNENLGTICNAHVVHADHSEYGALDENC---ILLAELAATAVDF 957
             R I +F AK    +     LG     H     H+     D  C   ++LA L +  VD 
Sbjct: 1046 VRSIDQFLAKVFLFNAKPSQLGPCTIEHETFCYHNN----DLGCKGAVMLAWLLSYLVDS 1101

Query: 958  PKTG-----------KIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDE 1006
             K G           +   MP  L+   Y  F  ++   S   + +L  + +   D   E
Sbjct: 1102 KKAGLELPGKAWRRLRAEYMPVKLEQPAYKTFDHEKRNSSNIIDYLLFDVIKAESDRILE 1161

Query: 1007 DISVSSEVDIN-PVDIHYDTDLEVPESVDFIADAWN---QKCSYDGQLNGLLEQY 1057
            D     E     P+D H             + DAWN   Q+ + + Q  G LE Y
Sbjct: 1162 DFDRFCEEHSGLPIDPH-------------LVDAWNKAEQRAANEKQ-GGKLELY 1202


>gi|310799490|gb|EFQ34383.1| RNA-directed RNA polymerase [Glomerella graminicola M1.001]
          Length = 1348

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 152/335 (45%), Gaps = 54/335 (16%)

Query: 583 GYVFSDGIGKITPDLAMEVAQKLKL-DVNPPPCAYQIRYAGCKG--VVACWPAKGDGIRM 639
           G V +DGIG+++  LA +    L L D+   P A Q R    KG  ++     KGD + +
Sbjct: 656 GKVMNDGIGRMSRSLARKTRDVLGLSDI---PSAIQGRIGPAKGMWLIDIADDKGD-LWL 711

Query: 640 SLRESMNKFQ-----SHHTTLEICSWTRFQPGF--LNRQIITLLSTLNVPDE-MFWSMQD 691
            L  S  K+        H TLE+ +  +  PG   LN Q + +L    +  E M   +  
Sbjct: 712 ELWPSQRKWNCDFGDPEHRTLEVRAHAK-DPGSACLNIQFLPVLEDRAINKEAMREVIGK 770

Query: 692 SMLSKLNQMLVDSDVAFEV---------LTAACAEQ----GNTAAI-------------M 725
           S++ +LN+ L +   A +           T++   Q    G+   +             +
Sbjct: 771 SLVDELNRQLEEQKDAMKYPLQFRQWISQTSSTRTQRLAHGHVPYMGGLPESNEEIMNSL 830

Query: 726 LSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQ 785
           + AGF+P+ + +L+ +   +R +    L++K  I V    +L   +D   VLE G+  + 
Sbjct: 831 IDAGFDPRRQRYLQELAWNLRYSLCESLKKKMSIKVSNSAYLFMVVDFWNVLEEGEVHLC 890

Query: 786 VSEPFLGNCFSKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYD 844
            S  F  + FS             ++ G  V++A++P     DI+ ++AV  PELH + D
Sbjct: 891 FSSKFQTDTFSD-----------SILHGCDVLVARSPAHFVSDIQRVKAVFKPELHTIKD 939

Query: 845 CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
            +VF  KG+ P  ++ SG D DGD  +V W+  ++
Sbjct: 940 VIVFSAKGNVPLADKLSGGDYDGDKAWVCWEPAIV 974


>gi|7505900|pir||T23669 hypothetical protein M01G12.12 - Caenorhabditis elegans  (fragment)
 gi|25395342|pir||F87936 protein M01G12.12 [imported] - Caenorhabditis elegans
          Length = 604

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 125/280 (44%), Gaps = 61/280 (21%)

Query: 322 IHYEEGISFEIMFLVNAVMHKGIINQHQ-LSD-----SFFDLLRG---QSREVNVAAL-- 370
           I+  +G  F I +L+  ++ +G I + Q L+D      F  L+     ++ ++  AAL  
Sbjct: 345 INENDGRQFAITYLIECLLSRGAIVKDQVLTDEICWGQFLGLITHYYLENDKLCEAALED 404

Query: 371 --------KHIYSYKWPVFDACKRLKLVQEWL--LKDPELYKGPKQIDDIVEVRRLVITP 420
                   K I S  W  F    + +LV +    + + E+ +G ++      VR+++ TP
Sbjct: 405 LIYLIDGRKRIGSI-WKCFHKICQKRLVMQLTNGMSEQEIEEGYQR------VRKVIFTP 457

Query: 421 TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
           T+    PPE+ + NRVLR +       LRVTF D+  + M AN     +     DI    
Sbjct: 458 TRVIYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRANATGELL-----DIC--- 509

Query: 481 FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDG------------ 528
                     V+  L  G  +  R F FL  SSSQ+RD  A+F  ++             
Sbjct: 510 ----------VKKYLEHGIVVANRDFGFLGCSSSQMRDNGAYFMVKNTDNRHKNACKMNS 559

Query: 529 --KTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATV 565
             K ++  ++  +G F   +NI K  AR+GQCF+ +  +V
Sbjct: 560 KFKPNIDSVRNQLGNFLQIENIPKLMARLGQCFTQSRVSV 599


>gi|212534570|ref|XP_002147441.1| RNA-directed RNA polymerase, putative [Talaromyces marneffei ATCC
            18224]
 gi|210069840|gb|EEA23930.1| RNA-directed RNA polymerase, putative [Talaromyces marneffei ATCC
            18224]
          Length = 1361

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 109/494 (22%), Positives = 182/494 (36%), Gaps = 75/494 (15%)

Query: 549  KCAARMGQCFSSTYATVEVPPTEV----DPELPDIKRNGYVFSDGIGKITPDLAMEVAQK 604
            K   R+G   S T+ATV + P +     DP          V +DG   ++  LA  +  +
Sbjct: 636  KLFNRIGLALSKTWATVVIQPHQFLKLSDP------LGKPVMNDGCALMSRPLARAICAE 689

Query: 605  LKLDVNPPPCAYQIRYAGCKGVVACWPAKGD-----GIRMSLRESMNKFQSH-------- 651
            L +D    P  +Q R AG KG+   W    D     G  + + +S  K + H        
Sbjct: 690  LGID-GITPSTFQGRIAGAKGL---WMVDRDLDDDKGFWIQISDSQLKVKPHPCDFFGHV 745

Query: 652  ---HTTLEICSWTR-FQPGFLNRQIITLLSTL-----------------------NVPDE 684
                 T E+ SW++  +   LN Q++ +L+                         NV + 
Sbjct: 746  DEEKITFEVASWSKPLRSSELNTQLLEVLNNRGQVRKRVADIAREAIRDIYKEFENVMER 805

Query: 685  MFWSMQDSMLSKLNQMLVD--SDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGML 742
                +  +++ K+     D  S      +    ++   +    L AGF+P+  P LR  +
Sbjct: 806  NSIPLARALIQKIRPTADDGYSRTNIRRIDQWLSQTIESVIRFLEAGFSPRDFPPLRERM 865

Query: 743  TCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRF 802
                   L     +  I +P   +     D  GVLE  +             FS      
Sbjct: 866  RICLNDTLNRYVNELHIPIPLSTYAYCIADPYGVLEENEVHF---------AFSGQWRDC 916

Query: 803  AETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASG 862
            +      V    V++ + P   P DI+   AV   EL H  D +VF  +G  P  +  SG
Sbjct: 917  SYFDDAMVDGADVLVGRTPAHCPWDIQRRRAVWKSELRHFKDVIVFSTRGTTPLASLLSG 976

Query: 863  SDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDII--------EFFAK 914
             D DGD  ++ WD+ ++     ++PP+E +  E   L +       +          F  
Sbjct: 977  GDYDGDRPWICWDQGIVETFTNTFPPLEESGPEHFGLVKHAQPMSTVGSVGDFLRNAFKF 1036

Query: 915  HMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMP--AHLKP 972
            ++   NLG     H   +   + G      + LA L +  VD  K+G  +T    +  + 
Sbjct: 1037 NLAMSNLGRCTVEHEKLSYDEKEGISSPLSLELATLLSHLVDSKKSGLQLTEEQWSRYRK 1096

Query: 973  KLYPDFMGKEAYQS 986
             + P   G  AY++
Sbjct: 1097 SISPRERGVPAYKN 1110


>gi|242790556|ref|XP_002481575.1| RNA-directed RNA polymerase, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218718163|gb|EED17583.1| RNA-directed RNA polymerase, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1360

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 181/468 (38%), Gaps = 67/468 (14%)

Query: 549  KCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLD 608
            K  +R+    S T+ATV V P +   +LPD   +  V +DG   ++  LA ++  KL +D
Sbjct: 636  KLFSRLSLALSKTWATVVVRPHQF-LKLPDAP-DKPVMNDGCALMSRSLARDICTKLGID 693

Query: 609  VNPPPCAYQIRYAGCKGVVACWPAKGDGIR--MSLRESMNKFQSH-----------HTTL 655
                P A+Q R AG KG+      +G+  R  + + +S  K + H             T 
Sbjct: 694  -GVTPSAFQGRIAGAKGLWMVDRDRGEDERFWIQVSDSQLKVKPHPRDFFGHVDKEKITF 752

Query: 656  EICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAA 714
            E+  W++  +   +N Q   LL  LN   ++   + D     +  +  + ++  E  +  
Sbjct: 753  EVVGWSKPLRSSEINTQ---LLEVLNNRGQVRNRVADIARDAIRSIYSEFEIVMEKNSIP 809

Query: 715  CA-----------EQG---------------NTAAIM--LSAGFNPQTEPHLRGML-TCI 745
             A           E G               N  +I+  L AGF+P+    LR  L  C+
Sbjct: 810  LARALIQKIRPNTEDGHSRTNIRRIDQWLSNNIESIIRFLEAGFSPRDFHPLRERLRICL 869

Query: 746  RAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET 805
            R   L     +  I +P   +     D  GVLE  +             FS      A  
Sbjct: 870  RDT-LDRYVTQLHIPIPLSTYAYCIADPYGVLEENEVHF---------AFSGQWRDCAYF 919

Query: 806  KKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDL 865
                V    V++ + P   P DI+   AV   EL H  D +VF  KG  P  +  SG D 
Sbjct: 920  DDAMVDGVDVLVGRTPAHCPWDIQRRRAVWKSELRHFKDVIVFSTKGTTPLASLLSGGDY 979

Query: 866  DGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL---TRPVDQRDIIE-----FFAKHMV 917
            DGD  +V WD  ++     + PP      E   L    RP++    +E      F  ++ 
Sbjct: 980  DGDRTWVCWDSGIVESFTNTTPPAIEPGPEHFGLVKHARPMETVSSVEDMLQNTFKFNLA 1039

Query: 918  NENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT 965
              NLG     H   A   + G      + LA L +  VD  K+G  +T
Sbjct: 1040 TTNLGQCTVEHNKLAYDEKEGISSPLSLELATLLSHLVDSTKSGLQLT 1087


>gi|255956165|ref|XP_002568835.1| Pc21g18410 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590546|emb|CAP96738.1| Pc21g18410 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1430

 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/480 (25%), Positives = 191/480 (39%), Gaps = 73/480 (15%)

Query: 531  SVLDIKKW-MGRFTDKNIAKCA--ARMGQCFSSTYATVEVPPTEV-----DPELPDIKRN 582
            SV  + +W M +  + N   C    R+    S T+ATV++ PT+V     DP  P     
Sbjct: 732  SVDALLEWHMPKTANANQTNCKLFQRISLGLSKTFATVKLKPTQVLRLRDDPTRP----- 786

Query: 583  GYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGD-GIRMSL 641
              V +DG   ++  LA ++  +L +    P C +Q R AG KG+     +     I    
Sbjct: 787  --VMNDGCALMSRTLANQICDQLGITTATPSC-FQGRIAGAKGLWMIQISDSQLKIHPHP 843

Query: 642  RESMNKFQSHHTTLEICSWTR-FQPGFLNRQIITLLS-TLNVPDEMFWSMQDSMLSKLNQ 699
            +E +        T E+ +W +   P  LN Q++ +L    NV + +    +D + S  + 
Sbjct: 844  QEWVGPVDEEKLTFEVVNWAKQLHPVDLNIQLLAILEYGGNVKEYIAKLTRDGVQSLYDD 903

Query: 700  ML----VDSDVAFEVLTA---ACAEQGNTAAIMLS---------------AGFNPQTEPH 737
             L     +S V    L        E G   A  L                AGF P+    
Sbjct: 904  FLEVLRSNSPVVCRALLQKLRPSGEDGTGKARRLEQWVTNDAESIIHFSEAGFAPRDFFP 963

Query: 738  LRGMLTCIRAAQLWGLR---EKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNC 794
            LR     IR    W L    E+ +I VP   +     D  GVL   +     S     N 
Sbjct: 964  LR---MKIRQYLTWLLERNVEELKIQVPLSTYAYCIADPYGVLGPDEVHFGFS-----NN 1015

Query: 795  FSKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGD 853
            +     +F +     ++ G  V++ + P   P DI+   AV   EL H  + +VFP  G+
Sbjct: 1016 WRDPQGQFEDN----LLDGVDVLVGRLPAHLPSDIQRRRAVWKSELRHFKNVIVFPTTGE 1071

Query: 854  RPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR---PVDQRDIIE 910
             P     SG D DGD  ++ WD  ++   + S  P +  +AE   LT+   P+   +  E
Sbjct: 1072 FPLAGMLSGGDYDGDTPWICWDPMIVERFQNSPMPTDEYSAEHYGLTKHSVPMASLESTE 1131

Query: 911  FFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHL 970
             F + + + NL  + N      +H E  A DE           +VD PK  ++  +  HL
Sbjct: 1132 DFLESVFDFNL-NVSNLGRCTVEH-EKLAYDE-----------SVDSPKAKELACLLGHL 1178


>gi|159126570|gb|EDP51686.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus A1163]
          Length = 1318

 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 158/605 (26%), Positives = 236/605 (39%), Gaps = 102/605 (16%)

Query: 549  KCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLD 608
            K   R+    S TYATV + P ++   L D+  N  V +DG   ++  LA  +  +L + 
Sbjct: 602  KLFQRISLGLSKTYATVTLKPWQI-LHLRDVP-NRPVMNDGCALMSRPLANAICDQLGIT 659

Query: 609  VNPPPCAYQIRYAGCKGV------VACWPAKGDGIRMSLRESMNKFQSH----------- 651
             N P  A+Q R AG KG+       +     GD   + + +S  K Q H           
Sbjct: 660  GNTP-SAFQGRIAGAKGLWMVDRHNSGISGGGDDFWIQISDSQLKIQPHPQAWRGPVDDE 718

Query: 652  HTTLEICSWTR-FQPGFLNRQIITLL---------------STLNVPDEMFWS------- 688
              T E+  W++   P  LN Q++ +L               + +    + F S       
Sbjct: 719  KLTFEVVKWSKPLHPVELNTQLLAILEHGGQVREHIAELTRAGIRAISQDFASVLESNSA 778

Query: 689  ------------MQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLS-AGFNPQTE 735
                        M D  LS +NQ +       E  TA  AE    A I L+ AGF P++ 
Sbjct: 779  ALCRSLIQKIKPMADDGLSGINQRMK----RLEQWTANDAE----AIIRLTEAGFAPRSF 830

Query: 736  PHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCF 795
              LR  L       L    ++  I VP   +     D  GVL+  +     S     N +
Sbjct: 831  YPLRRRLGRCLRDLLDRYVDELHIEVPLSTYAFCIADPYGVLKEDEVHFGFS-----NNW 885

Query: 796  SKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDR 854
                 +F +     ++ G  V++ + P   P DI+   AV   EL H  D +VFP  GD 
Sbjct: 886  RDVRGQFEDN----LLDGVDVLVGRLPAHVPSDIQRRRAVWKTELRHFKDVIVFPTTGDI 941

Query: 855  PHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR-PVDQRDII---E 910
            P  +  SG D DGD  ++ WD+N++   + S  P E    E   LT+  V  RDI    E
Sbjct: 942  PLAHMLSGGDYDGDTPWICWDQNIVQRFQNSDLPTEEYPPEHFGLTKHSVSMRDIQSTDE 1001

Query: 911  F----FAKHMVNENLG--TICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIV 964
            F    F  ++   NLG  T+ +  + + +  +     E   LL+ L    VD  K G  +
Sbjct: 1002 FLQSAFTFNLTTSNLGRCTVEHEKIAYDESIDSARAKELACLLSHL----VDGRKGGVHL 1057

Query: 965  TMPA--HLKPKLYPDFMGKEAYQSY----KSNKILGRL----YRQSKDAYDEDISVSSEV 1014
            +  A    + K+ P      AY++     K   I+  L     R+ + A  ED+  +   
Sbjct: 1058 SEQAWQQYRKKVSPKAREVPAYKNAGRKPKKTSIIDYLKFEVARKERHAVLEDLQRAFPE 1117

Query: 1015 DINPVDIHYDTDLEVP-ESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSM 1073
            D +  D   D DL  P       A+   Q  S  GQL     +Y     E L +  I S 
Sbjct: 1118 DDSVYD--RDEDLVRPWNEAQREAEIEKQGTSEHGQLRAAF-KYAEREVERLYSQWISSF 1174

Query: 1074 PKYNS 1078
               NS
Sbjct: 1175 SGENS 1179


>gi|242053113|ref|XP_002455702.1| hypothetical protein SORBIDRAFT_03g022060 [Sorghum bicolor]
 gi|241927677|gb|EES00822.1| hypothetical protein SORBIDRAFT_03g022060 [Sorghum bicolor]
          Length = 108

 Score = 81.3 bits (199), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/108 (37%), Positives = 58/108 (53%)

Query: 889 MEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLA 948
           M+Y A   + +   V   +I + F  +M N+ LG I   H++HADH+   A    C+ LA
Sbjct: 1   MDYTATRPRIMDHAVTLEEIQKHFDSYMTNDTLGVISTVHLIHADHNPLNAHTPKCLQLA 60

Query: 949 ELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRL 996
            L + AVDF KTG    M   L+P+ +PDFM +     Y SN +L +L
Sbjct: 61  ALHSMAVDFAKTGPPAEMSLTLRPREFPDFMEQWERPMYVSNNVLDKL 108


>gi|170091852|ref|XP_001877148.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648641|gb|EDR12884.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1193

 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 80/178 (44%), Gaps = 26/178 (14%)

Query: 721 TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
           T   ++ AGF PQT P LR  L  I  + +    +  RI VP         D LGVL+ G
Sbjct: 672 TVMYLIDAGFTPQTCPVLRSKLEKIVKSSVKNYIKAYRIDVPMSASAFLVPDILGVLKPG 731

Query: 781 QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRIL--------- 831
           + F + S         +   R  +  +  ++ G V+I ++PC  P DI+ +         
Sbjct: 732 EIFYKSS---------RRNLRQTDGTETDIMLGDVLITRHPCKLPTDIQKVRASSQFMFV 782

Query: 832 --------EAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
                   +AVD PELHHL D +V P  GDR   +  SG D DGD   +T    L+ P
Sbjct: 783 KHLYSPQWKAVDRPELHHLTDVIVLPTTGDRRAADLLSGGDYDGDKGLITNQPELVIP 840


>gi|347839298|emb|CCD53870.1| RNA Polymerase RNA dependante [Botryotinia fuckeliana]
          Length = 1007

 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 158/387 (40%), Gaps = 77/387 (19%)

Query: 549 KCAARMGQCFSSTYATVEVPPTEV----DPELPDIK--RNGYVFSDGIGKITPDLAMEVA 602
           K  AR     S   ATV V  T++    D   PD+      YV +DG G+++  LA ++ 
Sbjct: 622 KLFARTALVVSRNRATVTVEETQIRRKEDIRNPDVNDPSKTYVMTDGAGRMSLALARKIV 681

Query: 603 QKLKLDVNPPPCAYQIRYAGCKG---VVACWPAKGDGIRM---SLRESMNKFQSH----- 651
             LKL++   P A+Q R+   KG   V      + D I +     +    K  SH     
Sbjct: 682 --LKLELAYIPSAFQGRFGQAKGLWIVDRTQDIENDWIELYGEQCKWKRGKKGSHDYGHP 739

Query: 652 -HTTLEICSWTR-FQPGFLNRQIITLL------------------------------STL 679
            H T E+   +   +   LN Q++ +L                              S L
Sbjct: 740 SHRTFEVVGHSAPLKTADLNTQLLPILMHQATNPKTMENAIVGALKEGLKQSLEELRSAL 799

Query: 680 NVPDEMF-W------SMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNP 732
           N P E+  W      S+QD +           +   + L     +  +   ++L AGF+P
Sbjct: 800 NSPQELRCWNRLTNSSLQDRV----------KNGTLQWLGGLPTKNEDKLNLLLDAGFDP 849

Query: 733 QTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLG 792
           +   ++  ++      +   L+E+  I V     +    D  GVLE  +  +  S     
Sbjct: 850 RRLQYVMDLVKKSFDMKCAELKERLNITVAKSTKVYMVPDFWGVLEPNEVHLDFS----- 904

Query: 793 NCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKG 852
             F  + +  ++   +Q+    V++A+NP  +P DI+ + AV+  EL HL D +VF  KG
Sbjct: 905 -SFVDNETGLSD---IQLEDMDVLVARNPAHYPSDIQRVTAVNKHELRHLKDVIVFSTKG 960

Query: 853 DRPHTNEASGSDLDGDLYFVTWDENLI 879
                ++ SG D DGD+ +V WD  ++
Sbjct: 961 YPALADKLSGGDYDGDIAWVCWDRAIV 987


>gi|408399167|gb|EKJ78292.1| hypothetical protein FPSE_01753 [Fusarium pseudograminearum CS3096]
          Length = 1388

 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 143/654 (21%), Positives = 241/654 (36%), Gaps = 129/654 (19%)

Query: 427  PPEVELSNRVLRKYKDLADRFLRVTF------------------MDEGLQTMNANVLSYF 468
            PP +EL +R+ R++   ADRF+ +                     D+ +  +N N L YF
Sbjct: 517  PPRLELGHRLARRFG--ADRFMEIIIPSPTSRDAPEIIRNDEQGADKVIGWLNDN-LHYF 573

Query: 469  I----APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFF 524
            +    +P        S        K + +I+    Y       F A   +  R   + F 
Sbjct: 574  LGRSWSPFYNRAASKSVKDPRPPHKSI-TIMQERVY-------FFAIDGNNFRLPESQFP 625

Query: 525  SEDGKTSV--------LDIKKW---MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVD 573
            + +  TS+         D+ KW   +     + + K  +R+    S T  T+ + P +  
Sbjct: 626  ALEEATSLEYRTKMRRSDLLKWAIDVEANAFQPVPKLFSRLALSLSKTCPTIVLEPHQFR 685

Query: 574  PELPDIKRNGYVFS----------DGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGC 623
                 +  + Y+ S          DGI +++  LA  V+  L L   P  CA+Q R    
Sbjct: 686  HRDTMLGFHKYMSSRDREEQKDMGDGIARMSRGLARRVSTHLGLLETP--CAFQARIGSA 743

Query: 624  KGV---------------VACWPAKGDGIRMSLRESMNKFQS-HHTTLEICSWTR-FQPG 666
            KG+               +  +P++        R+   KF+  HH T E+  W+R  +  
Sbjct: 744  KGMWIVDVEDDGLDDDVWIETYPSQ--------RKWECKFEDVHHRTFEVREWSRELKSA 795

Query: 667  FLNRQIITLL--------STLNV-PDEMFWSMQDSMLSKLNQMLVDSDV------AFE-- 709
             LN Q I +L        S  NV  + +   +QD +  +L  M   + +       F+  
Sbjct: 796  SLNSQFIPVLEAQAPNPNSMRNVIANHLANGLQDEIGGQLAAMTHPTSLRGWTHRGFDRS 855

Query: 710  ------VLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA 763
                   +        +  + ML AGF+      LR ++   +  Q   L+ K  I +P 
Sbjct: 856  SLGRVPFVGGLPDHDDDIVSFMLDAGFDATKCRFLRDLVWNNQKRQAEQLKAKMNIKIPR 915

Query: 764  GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCL 823
              +    +D  G LE G+  +  S  F  +          E+  L +    +++A+ P  
Sbjct: 916  SAYAFMVVDFTGTLEEGEVQLAFSSKFQAD---------GESDTL-LDDIDILVARAPAH 965

Query: 824  HPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSK 883
               D++ + AV  P L  L D +VF  KG  P  +  SG D DGD  +V WD +++    
Sbjct: 966  FVSDVQKVRAVFRPNLKRLKDVIVFSSKGKSPLADMLSGGDYDGDQAWVCWDPDIVRNFS 1025

Query: 884  KSWPPME-----------YNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGT----ICNAH 928
             +  P E            N +    L    D       F +  ++ N+      I    
Sbjct: 1026 NASKPAEPDLVKQGYLRKSNPSFQSILETTPDMESACTGFLRSAISFNMQPTYLGIATKF 1085

Query: 929  VVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKE 982
                 + E G   E  + L+ L A  VD  K G + T   + + K   +  GKE
Sbjct: 1086 KERLCYLEGGVNSERAVALSTLVALLVDQAKQGLLFTRGDYDRLKRDMEMRGKE 1139


>gi|302653254|ref|XP_003018456.1| RNA-directed RNA polymerase, putative [Trichophyton verrucosum HKI
           0517]
 gi|291182103|gb|EFE37811.1| RNA-directed RNA polymerase, putative [Trichophyton verrucosum HKI
           0517]
          Length = 1082

 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 126/526 (23%), Positives = 191/526 (36%), Gaps = 103/526 (19%)

Query: 427 PPEVELSNRVLRKYKDLADRFLRVTF--------------MDEGLQTMNANVLSYFIAPI 472
           P ++E S+R  R+Y   ADRFL +                  + L    +N   Y +   
Sbjct: 245 PLKLEKSHRFARRYG--ADRFLEILLPSKHPTKSGRDAEIFGKALGKWLSNEYHYLLGRR 302

Query: 473 VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKT-- 530
            R   L  F  K++         +  F   GRK    A          +     D  +  
Sbjct: 303 WRAFYLEDFKSKSK---------TTSFSGSGRKTFLFAVDGEDFLGTPSGISPMDETSEN 353

Query: 531 ----SVLDIKKW---MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG 583
               +V  +  W     R T +  +K   R+    S T AT+ + P E    + D     
Sbjct: 354 HTPMTVEQLVDWHIHYARNTHQEYSKLFTRIRLGLSRTTATITLRPEEF---IYDDDPRQ 410

Query: 584 YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGD------GI 637
              SDG   ++  L   +A  L L  +  P  +Q R AG KG+     AK D      G+
Sbjct: 411 EKMSDGFAMMSRSLGKAIADSLCL--SKVPTIFQGRIAGAKGIWLV--AKDDHDIHVKGL 466

Query: 638 R---------MSLRESMNK-----------FQSHHTTLEICSWTRF-QPGFLNRQIITLL 676
           R         + +  S  K           F  H  T ++ S+++  QP  LN Q + +L
Sbjct: 467 RHFETERGYWLVINASQLKVQPPPCDTSLTFDEHQLTFDVSSYSQPPQPVHLNIQFLMVL 526

Query: 677 STLNVPDEMFWSMQDSMLSKLNQ--MLV-----------------DSDVAFEVLTAACAE 717
               V  E   S+      K     +LV                 D+      L  +   
Sbjct: 527 QDRGVNKEYILSLIPDEADKFYSEFLLVQNGDSVACRAWVRKNGGDASSQILALNESTFP 586

Query: 718 QGNTAAI--MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELG 775
             +TA +  +L AGF+P     +R +             E  +I +P   ++    D  G
Sbjct: 587 TNHTAQLNGLLDAGFSPSNLAFVRRLFKENSLGGFVQKLEALKIKIPHSTYVYCIPDPYG 646

Query: 776 VLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVD 835
           VLE GQ  +      LG+ +         T  L  I   V++A+ P   P DI+   AV 
Sbjct: 647 VLEEGQIHLD-----LGDSWEDG------TTDLDGID--VLVARAPAHLPSDIQKCRAVF 693

Query: 836 HPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
           HP L +L    +F  KGD P  +  SG D DGD  +V WD+ ++ P
Sbjct: 694 HPALRYLKHVAIF-TKGDVPLASLLSGGDYDGDEVWVCWDQEIVKP 738


>gi|389742384|gb|EIM83571.1| hypothetical protein STEHIDRAFT_101865 [Stereum hirsutum FP-91666
           SS1]
          Length = 987

 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 131/591 (22%), Positives = 212/591 (35%), Gaps = 125/591 (21%)

Query: 495 LSGGFYLCGRKF---------SFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFT-- 543
           LS  F L GR F          FL  ++      +     +D + S+     W   F+  
Sbjct: 176 LSRKFILLGRVFLVFASKDSKVFLMETNENYERVADPRQGDDRRLSLGQFLSWHNSFSRN 235

Query: 544 -DKNIAKCAARMGQCFSSTYATVEVPPTEV----DPELPDIKRNG----YVFSDGIGKIT 594
             + ++K   R     S++   ++  P ++    D    DI ++        +DG G + 
Sbjct: 236 SKQAVSKWVTRFDLGLSTSVPVLQFAPDDIEVIPDKYPKDIDQSNASTEQTLTDGCGFM- 294

Query: 595 PDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDG---IRMSLRESMNK---- 647
            ++A  VA    +    P  A Q R AG KGV    P   D     R+ +R+S  K    
Sbjct: 295 -NMAALVAVARSMGFLSPHTAVQGRIAGSKGVWMLHPVDRDPHSPPRIWIRDSQVKIKLG 353

Query: 648 ----FQSHHTTLEICSWTRFQ-PGFLNRQIITLLSTLNVPDEMFWSMQDSML-------- 694
               ++  H   +    +R   PG L+ Q I  +    VP+E F  + D  L        
Sbjct: 354 DQRLWKREHLIFDFLGPSRVTYPGRLSMQFIINMEHNGVPNEAFALLMDDGLREHIDPLM 413

Query: 695 -----------------------SKLNQMLVDSDVAF----------EVLTAACAEQGNT 721
                                  SK+ Q+   S  A           E   A   + G+ 
Sbjct: 414 KWDGPEAPHLLRDALDKMGNVSGSKVQQLAGSSRRALGLGQKFGRDNEQPLAGVEDGGDP 473

Query: 722 AA------------IMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMG 769
           AA            +ML+AGF P+   +LR  L  + + ++    +   I +P       
Sbjct: 474 AAEEAEIFCHERVMMMLAAGFTPKNAIYLRTELRELISREIEKWVKNYHIVIPHSAEAFI 533

Query: 770 CLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIR 829
             D  G+LE  Q F Q S P        +         + +++G  +I +NP   P DI+
Sbjct: 534 VPDPYGILEPDQIFFQSSVPL-------NDPATGMNMNISILEGPCLIGRNPARLPSDIQ 586

Query: 830 ILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW--- 886
            + AV  P+     D ++   KG        +G D DGD   + W   ++ P  + +   
Sbjct: 587 KVTAVYRPQYKEYKDVIICSIKGKVSAAFPLAGGDYDGDRALLQWSPTVVEPFSRPYAEV 646

Query: 887 ---PPM----------EYNAA---EAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAH-- 928
              PP           E  AA       ++      ++I+   + + +  +G   N H  
Sbjct: 647 VPPPPNFIEDHFDSEPEKVAAFHDRVAAMSSRERNHEVIKVLLRALNDSKVGKYSNFHDN 706

Query: 929 VVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFM 979
            V+A    YG  D   ILLA L  T +D  K+G        LKP ++   M
Sbjct: 707 AVYA----YGYDDPRSILLAYLFTTLLDSNKSG------LRLKPGIFERHM 747


>gi|156058730|ref|XP_001595288.1| hypothetical protein SS1G_03377 [Sclerotinia sclerotiorum 1980]
 gi|154701164|gb|EDO00903.1| hypothetical protein SS1G_03377 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1390

 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 127/536 (23%), Positives = 213/536 (39%), Gaps = 111/536 (20%)

Query: 427 PPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTR 486
           P +++L+NR+ R++   +DRF+     D  L++M     ++ + P   D  L S+     
Sbjct: 480 PMKLDLTNRLERRFG--SDRFIEFAVPD--LESMKRGSPAFKVDPNACD-ALKSW----- 529

Query: 487 VFKRVRSILSGGFYLCGRKF-SFLAFSSSQLRDCS---------------AWFFSEDGKT 530
                  +++G   L GR + +F   S  + R  S               A+ F+ DG  
Sbjct: 530 -------LVNGDHQLLGRTYKAFYVTSGKRKRKSSLKSDAEEESSATPYRAFLFATDGIG 582

Query: 531 SV-----------LDIKKWMG------RFTDKN----IAKCAARMGQCFSSTYATVEVPP 569
            V           + ++  +G      R T +N      K  AR     S   ATV V  
Sbjct: 583 FVKGSRARNPAPQVRVRMTVGEMLNCIRPTAENDYQPYMKLFARTALVVSRNRATVTVDQ 642

Query: 570 TEV----DPELPDIK--RNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGC 623
             +    D   PD+   +  YV +DG G+++  LA ++    +L+++  P A+Q R+   
Sbjct: 643 AHIRRREDIRNPDVNNPKKTYVMTDGAGRLSLALARKIV--FELELSYIPAAFQGRFGEA 700

Query: 624 KG---VVACWPAKGDGIRM--------SLRESMNKFQS-HHTTLEICSWTR-FQPGFLNR 670
           KG   V      + D I +           E   +F    H T E+   +   +   LN 
Sbjct: 701 KGLWIVDRSEDIESDWIELYDEQCKWERGEEGSPEFDHWSHRTFEVVGHSAPLKTADLNT 760

Query: 671 QIITLL------------STLNVPDEMFWSMQDSMLSKLNQ--------MLVDSDVAFEV 710
           Q++ LL            + LN   E      + + + L           L +S V   V
Sbjct: 761 QLLPLLVHQATDPRAMRNAILNALKEGLKQSLEELKTALTSPQELRSWIRLTNSSVQDRV 820

Query: 711 LTAACAEQGNTAA-------IMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA 763
              A   +G   A        +L AGF+P+   ++  +       +   L+E+  I V  
Sbjct: 821 KNGAIQWRGGLPAKHEDRLSTLLDAGFDPRKLHYIMELAKKAFDMKCEELKERLNITVAK 880

Query: 764 GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCL 823
              +    D  GVLE  +  +  S       F  + S  ++T   Q+    V++A+NP  
Sbjct: 881 STKVYMVPDFWGVLEPNEVHLNFS------SFVDNESGLSDT---QLENVDVLVARNPAH 931

Query: 824 HPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
           +P DI+ + AV   EL HL D +VF  KG     ++ SG D DGD+ +V WD  ++
Sbjct: 932 YPSDIQRVTAVSKHELRHLKDVIVFSTKGYPSLADKLSGGDYDGDIAWVCWDPAIV 987


>gi|342884280|gb|EGU84517.1| hypothetical protein FOXB_04968 [Fusarium oxysporum Fo5176]
          Length = 206

 Score = 79.7 bits (195), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 9/175 (5%)

Query: 545 KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQK 604
           + IA  A R+G  FSS      + P   + ++P+++   Y+F+DG G I   LA E+A++
Sbjct: 5   RRIAAKAKRIGLLFSSATTVTTINPDRCE-DIPNVETADYIFTDGCGLIALKLANELARR 63

Query: 605 LKL---DVNPPPCAYQIRYAGCKGVVACWP--AKGDGIRMSLRESMNKFQ-SHHTTLEIC 658
            ++   D    P  +QIRY G KGVV   P   K + + + LR+SM KF      +  + 
Sbjct: 64  TRILLRDNRYTPSVFQIRYRGYKGVVIVDPRMTKQNPL-LKLRKSMKKFNGGEDHSFAVV 122

Query: 659 SWTR-FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT 712
            +++ F  G+LN + I LL  L +  E   S Q      L+    D   AF  L+
Sbjct: 123 EYSKPFSYGYLNDETIILLHALRISQETLLSKQRDHFRLLSNAKTDFRDAFRFLS 177


>gi|225557198|gb|EEH05485.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus G186AR]
          Length = 1388

 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 137/343 (39%), Gaps = 63/343 (18%)

Query: 583  GYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMS-- 640
            G V +DG   ++  L M VA  L LD +P    +Q R +G KGV   W    D  R    
Sbjct: 692  GTVMNDGCALMSKSLGMAVASALGLDGHP--AIFQARISGAKGV---WMVDLDDSRFKTG 746

Query: 641  -----LRESMNKFQSH-------------HTTLEICSWTR-FQPGFLNRQIITLLSTLNV 681
                 L+ + ++ + H               T E+  W+R   P  LN Q++ +L    +
Sbjct: 747  DRGFWLQITQSQLKIHPAPPHDTKPMDDTQLTFEVVQWSRPLSPASLNMQLLNILQHGGI 806

Query: 682  PDEMFWSMQDSMLSK-----LNQMLVDSDV-------AFEVLTAACAEQ----------- 718
             ++   ++    +S      L  +L  S V         + +T   +++           
Sbjct: 807  RNDHIRNLIKQEMSSFYDEFLRTLLCSSGVECRSWLQKMKWITNGSSKRQPKRTDNFFPS 866

Query: 719  --GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGV 776
                 A ++L AGF P   P+L  +   +    L  L+ K +I V    +     D  GV
Sbjct: 867  QYAEQAIMLLDAGFLPLKLPYLTKIFRRLLQDYLDNLK-KLKITVSQSTFAYCVADPFGV 925

Query: 777  LEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDH 836
            L   +  +  S  +      +HGS   E   + V+     +A+ P     DI+   +V  
Sbjct: 926  LRPDEVHLGFSREW------EHGSAGTELHDIDVL-----LARLPAHLATDIQKRRSVYK 974

Query: 837  PELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
             EL H+ D +VFP  GD P  +  SG D DGD  +V WD  ++
Sbjct: 975  NELRHMKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCWDPIIV 1017


>gi|296817563|ref|XP_002849118.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
 gi|238839571|gb|EEQ29233.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
          Length = 1255

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 150/382 (39%), Gaps = 82/382 (21%)

Query: 553 RMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPP 612
           R+G   S T  T+ + P EV   + D        SDG   I+  L   +   L L  +  
Sbjct: 608 RLG--LSRTTPTITLRPEEV---IYDNDPRQEQMSDGCALISKSLGKAITDSLGL--SKV 660

Query: 613 PCAYQIRYAGCKGV--VA----CWPAKG--------DGIRMSLRESMNKFQ--------- 649
           P  +Q R+AG KG+  VA    C    G         G  M +  S  K +         
Sbjct: 661 PACFQGRFAGAKGIWIVARDDQCPQVNGLRQTFETDRGYWMVINASQLKVKPPPCDRGVL 720

Query: 650 --SHHTTLEICSWTRF-QPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDS-- 704
              H  T ++ S+ R  Q  +LN Q + +L    +  E         LS + QM  D   
Sbjct: 721 LDKHQMTFDVSSYARTPQSVYLNTQFLMVLQNAGINKEY--------LSFIIQMEADKFY 772

Query: 705 DVAFEVL----TAACAE----QGNTAAI--MLSAGFNPQTEPHLRGMLTC-IRAAQLWGL 753
           D   E++    +AAC +     G + A+   +S GF P T   +  +L      ++L+ L
Sbjct: 773 DGYLEIIRTGDSAACRDWIKRMGGSTAVKATMSDGFPPDTLGQIIMLLDAGFLPSKLYFL 832

Query: 754 RE--------------KARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHG 799
           R                 +I +P   ++    D  GVLE G+  +              G
Sbjct: 833 RRLFKFYFDNYLQKLGDLKIKIPKSTYVYCIADPYGVLEEGEVHLA------------PG 880

Query: 800 SRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNE 859
             + +T  L  I   +++A+ P   P DI+   A+ HP L HL    +F  KGD P  + 
Sbjct: 881 DNWEDTPDLDGID--ILVARAPAHLPSDIQKCRAIFHPALRHLKGVAIFSTKGDVPLASL 938

Query: 860 ASGSDLDGDLYFVTWDENLIPP 881
            SG D DGD  +  W+  L+ P
Sbjct: 939 LSGGDYDGDEVWACWEPGLVNP 960


>gi|391867215|gb|EIT76465.1| hypothetical protein Ao3042_07438 [Aspergillus oryzae 3.042]
          Length = 1260

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 119/481 (24%), Positives = 181/481 (37%), Gaps = 75/481 (15%)

Query: 539  MGRFTDKNIAKCA--ARMGQCFSSTYATVEVPPTEVDP-ELPDIKRNGYVFSDGIGKITP 595
            M R  +   A C    R+    S T+ATV + P+++ P E P+      V +DG   ++ 
Sbjct: 538  MSRDDNIKQANCKLFQRISLGLSKTFATVALKPSQILPLEEPE---GTPVMNDGCALMSR 594

Query: 596  DLAMEVAQKLKLDVNPPPCAYQIRYAGCKGV------VACWPAKGDGIRMSLRESMNKFQ 649
             LA  +   L +     P A+Q R AG KG+       +    + D + + + +S  K +
Sbjct: 595  GLASRICDSLGI-TGATPSAFQGRIAGAKGLWMVDKHNSTISTESD-VWIQISDSQLKIK 652

Query: 650  SH-----------HTTLEICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSMQD------ 691
             H             T E+  W++      LN Q++ +L       E    +        
Sbjct: 653  PHPAGWQEPVDEEKLTFEVVKWSKPLHTVDLNTQLLAILEHGGQIKEYVAGLTRAGIRAV 712

Query: 692  -----------------SMLSKLNQMLVDSDVAF----EVLTAACAEQGNTAAIMLSAGF 730
                             S++ K+      S  A       +    A+       +  AGF
Sbjct: 713  CEDFATVVQSDSPVLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDAEAVVRLTEAGF 772

Query: 731  NPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPF 790
             P+T   LR  L       L    E+  I VP   +     D  GVL+  +        F
Sbjct: 773  APRTFRPLRKRLRKCLIGLLDQYVEQLHIEVPLSTYAFCIADPYGVLKEDEVHFG----F 828

Query: 791  LGNCFSKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFP 849
              N     G +F +     ++ G  V++A+ P   P DI+   AV  PEL H  D +VFP
Sbjct: 829  SSNWRDPEG-QFEDN----LLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFP 883

Query: 850  QKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS-WPPMEYNAAEAKTLTRPVDQRDI 908
              G  P  +  SG D DGD  +V WD+N++   + S    MEY A         V  +DI
Sbjct: 884  TVGTTPLAHMLSGGDYDGDTTWVCWDQNIVQKFRNSDLSTMEYPAEHFGLEEHNVPMKDI 943

Query: 909  IEF-------FAKHMVNENLGTICNAHVVHADHSEYGALDE-NCILLAELAATAVDFPKT 960
              +       F  ++   NLG      V H   S   ++D  N   LA L +  VD  K 
Sbjct: 944  DSWDEFLQSTFTFNLTMSNLGRCT---VEHEKISYDESIDSPNAKELACLLSHLVDGRKG 1000

Query: 961  G 961
            G
Sbjct: 1001 G 1001


>gi|340959153|gb|EGS20334.1| RNA polymerase-like protein [Chaetomium thermophilum var.
            thermophilum DSM 1495]
          Length = 1441

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 158/374 (42%), Gaps = 49/374 (13%)

Query: 544  DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRN-GYVFSDGIGKITPDLAMEVA 602
            D+   K  +R+    S T   +   P ++     DI    G V +DGIG+++  +A ++ 
Sbjct: 663  DQPYLKLFSRIQLGLSKTIPALTFEPHQIIHREKDILSPIGKVMNDGIGRMSRSVARKIR 722

Query: 603  QKLKL-DVNPPPCAYQIRYAGCKGVVACWPA-KGDGIRMSLRESMNKFQSH-----HTTL 655
              L L D+   P A Q R    KG+     A   D   +    S  K+  +     H TL
Sbjct: 723  DALGLTDI---PSAIQGRMGSAKGMWLMDVADTSDEDWIETYPSQRKWHCNWNDPAHRTL 779

Query: 656  EICSW-TRFQPGFLNRQIITLLST---------------LNVPDEMFWSMQDSML----- 694
            E+ S  T  +P  LN Q + +L                 L    E  + +Q S L     
Sbjct: 780  EVRSVPTELKPAGLNLQFLPILEAQAKDKAQMRYAIGERLKKDLETQFELQKSALNHPLK 839

Query: 695  ---------SKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCI 745
                     S  ++ + +  V F  L      +  T   +L++GF+P+ + +L+ +   +
Sbjct: 840  FRQWVNEDWSSRSERVRNGQVLF--LGGLPESKHETLFFLLNSGFDPKKQKYLQKLAWEL 897

Query: 746  RAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET 805
            +  +   L+ K  I V    ++   +D  G+LE  +  +  S  F  N      +   + 
Sbjct: 898  QYQRCELLKTKLNIKVGRSAYVYMVVDFWGMLEENEVHLGFSSRFCAN------TDLDQE 951

Query: 806  KKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDL 865
                +    V++A++P     D++ + AV  PELH L D +VFP KG+    ++ SG D 
Sbjct: 952  SFTLLADCDVLVARSPAHFVSDVQKVRAVFKPELHALKDVIVFPLKGNVALADKLSGGDY 1011

Query: 866  DGDLYFVTWDENLI 879
            DGD+ +V WD +++
Sbjct: 1012 DGDMAWVCWDPDIV 1025


>gi|449296300|gb|EMC92320.1| hypothetical protein BAUCODRAFT_569676 [Baudoinia compniacensis
           UAMH 10762]
          Length = 1367

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 131/589 (22%), Positives = 224/589 (38%), Gaps = 129/589 (21%)

Query: 481 FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSA------------WFFSEDG 528
             QK  +  R+  +L     L G+K++  AF + + +  S              FF+ +G
Sbjct: 397 IGQKGNITARILEMLKSDHMLLGQKWT--AFLNKKRKVTSVDPSYDDSKSFQISFFAVEG 454

Query: 529 ----KTSVLDIKKW---MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEV--------- 572
                 +V++   W   +    ++  AK  +R+    S T AT+   P  +         
Sbjct: 455 AGLDSINVVEAAGWAVPLRNNAEQYAAKAYSRLDLPVSRTDATIVFAPDAIEHIADIMSD 514

Query: 573 ---------DPELPDIKRNGY--VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYA 621
                    D  LP ++ +      +DG G IT   A  V   L L   P   A+Q+R A
Sbjct: 515 DVPDASDFNDASLPFLRSDQVPVAMTDGCGYITYAAARRVQSILNLTWLP--SAFQVRIA 572

Query: 622 GCKGVVACWP--AKGDGI--RMSLRESMNKFQSHHT--------TLEICSWTR------F 663
           G KG++       +GD    R+ L ++  K Q   +        TL++  +++       
Sbjct: 573 GAKGLLVVRQDITQGDMAQERIGLTQTQRKLQYSDSDLDDPARRTLDVVDYSKSVRSSHI 632

Query: 664 QPGFLNRQIITLLSTLNVPDEMFW----------------------SMQDSMLSKLNQML 701
            PGFL      +L    VP E                         ++   +L + N + 
Sbjct: 633 PPGFL-----PVLRDRGVPKEAILDVVGEQVKLETSGFLQALKSRSTLHRWVLCQRNVVG 687

Query: 702 VDSDVAFEVLTAAC-AEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKA-RI 759
             +     VLTA   A        +L + F P   P+LR  +    A  ++ ++ KA ++
Sbjct: 688 FRAAAGGIVLTAGFPANTIERILFLLESWFEPAQCPYLRKQVLDF-AGHVFDVKAKAWKL 746

Query: 760 FVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAK 819
            + +   +M   D    L+ G+ ++  S+P       +  S  A           +++A+
Sbjct: 747 HLGSCTSVMMIPDWTQTLKPGEAYLSFSKPIKDGTSGRVWSSLAGMD--------ILVAR 798

Query: 820 NPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
           NPC+   D++ L AV    L  ++D +VF  +G R   ++ SG D DGD+ +V WD  L+
Sbjct: 799 NPCIRNSDMQKLRAVSCAALAGIFDVIVFSTQGPRSLASKLSGGDYDGDIAWVCWDPRLV 858

Query: 880 PPSKKSWPPMEYNAAE--------------------------AKTLTRPVDQRDIIEFFA 913
            P K +  P +    +                          + TL     +R +    A
Sbjct: 859 LPFKNAPAPWKLTDIKNFGIVKDNTKLGEVLAIISSNGEVDASLTLDENAVRRWLHRGIA 918

Query: 914 KHMVNENLGTICNAHVVHADHSEYGAL-DENCILLAELAATAVDFPKTG 961
             M +  LGT+ N   +HA  +  G +  E   LLA+L    VD  K G
Sbjct: 919 SRMNSSLLGTVTN---LHAKLTYGGDISSEGATLLADLHDHLVDADKQG 964


>gi|295666726|ref|XP_002793913.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
 gi|226277566|gb|EEH33132.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
          Length = 1176

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 125/504 (24%), Positives = 198/504 (39%), Gaps = 80/504 (15%)

Query: 549 KCAARMGQCFSSTYATVEVPPTEVD--PELPDIKRNGYVFSDGIGKITPDLAMEVAQKLK 606
           K   R+    S T +TV +   EV   P+ P     G V +DG   ++  L +E+  K  
Sbjct: 493 KLFQRLALGLSRTLSTVVLRREEVIFCPDPP-----GSVMNDGCALMSRSLGLEI--KRI 545

Query: 607 LDVNPPPCAYQIRYAGCKGV--VACWPAK---GD-GIRMSLRESMNKFQ----------- 649
           LD+   P  YQ R +G KG+  V C  ++   GD G  + + ES  K             
Sbjct: 546 LDLEALPACYQGRISGAKGIWMVDCDDSRFKGGDRGFGLEITESQLKISYPPGPPHNPRL 605

Query: 650 --SHHTTLEICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSK-----LNQML 701
                 T E+  W++   P  LN Q++ +L    V       +    +S      L  + 
Sbjct: 606 VDDTQLTFEVVQWSQPLNPSSLNLQVLKVLQHGGVGHSHIKKLIQQEISIFYKEFLKVIH 665

Query: 702 VDSDVAFEVLTAACAEQGN----------------------TAAIMLSAGFNPQTEPHLR 739
           + + VA           G+                       A ++L +GF P   P+L 
Sbjct: 666 LSNGVACRKWLQKMKRFGDDGYSYKRQTRRIDNFFPSQYVEQAVLLLDSGFLPLKLPYLT 725

Query: 740 GMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHG 799
            +   I    L  LR K ++ V    +     D LGVL   +     S  +      + G
Sbjct: 726 QLFRWILKDYLDSLR-KLKVSVSQSTYAYCIADPLGVLSPDEVHFGFSHEW------EDG 778

Query: 800 SRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNE 859
           S    T+ L  I   V++A+ P   P DI+   AV   EL H  D ++FP  GD P  + 
Sbjct: 779 SVVVGTE-LHNIN--VLVARLPAHLPTDIQKRRAVYKNELRHFKDVIIFPTTGDVPLASL 835

Query: 860 ASGSDLDGDLYFVTWDENLIPP-SKKSWPPMEYNAAEAKTL---TRPVDQ-RDIIEFFAK 914
            SG D DGD  +V WD  ++   S   + P    ++E   L   + P++Q R I +F AK
Sbjct: 836 LSGGDYDGDQCWVCWDPIIVGEFSNTQFDPKTIPSSEQLGLVCYSLPMNQMRSIDQFLAK 895

Query: 915 HMVNENLGTICNAHVVHADHSEYGALDENC---ILLAELAATAVDFPKTGKIVTMPA--- 968
             +     +      +  +   Y   D  C   + LA L +  VD  K G  + +P    
Sbjct: 896 VFLFNAKPSQLGPCTIEHETLCYHNNDLGCKGAVTLAWLLSYLVDSKKAG--LELPGKAW 953

Query: 969 -HLKPKLYPDFMGKEAYQSYKSNK 991
             L+ +  P  + + AY++++  K
Sbjct: 954 RRLRAEYMPVKLEQPAYKTFEHEK 977


>gi|225683475|gb|EEH21759.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 1341

 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 174/751 (23%), Positives = 273/751 (36%), Gaps = 133/751 (17%)

Query: 399  ELYKGPKQIDDIVEVR-RLVITPTKAY----CLPPEVELSNRVLRKYKDLADRFLRVTF- 452
            E+Y+  +   D+V +  +L     K Y      P + E S R  R++   +DRFL +TF 
Sbjct: 468  EMYEDKRSTGDVVTLSGKLSWCKRKGYFDLSLNPLKFERSYRFCRRFG--SDRFLEITFP 525

Query: 453  ------------------MDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSI 494
                              + E +    AN   + +  + R   L    +K++   R   I
Sbjct: 526  VLTSPPSRLARDTEERGILLEAISRWLANSEHHLLGRVWRSFYLEDVKEKSKRTPRKNGI 585

Query: 495  LSGGFYLCGRKFS---FLAFSSSQLRDCSAWFFSED------GKTSVLDIKKWMGRFTD- 544
                    G K S     A + +   + +     +D       K S+  +  W     D 
Sbjct: 586  EMSPELETGSKRSRVFMFAINGTDFGESTMGIPLQDQTSGNRTKMSIDALINWHMPIADN 645

Query: 545  --KNIAKCAARMGQCFSSTYATVEVPPTEVD--PELPDIKRNGYVFSDGIGKITPDLAME 600
              ++  K   R+    S T +TV +   EV   P+ P     G V +DG   ++  L +E
Sbjct: 646  IHQSDCKLFQRLALGLSRTLSTVVLRREEVIFCPDPP-----GPVMNDGCALMSRSLGLE 700

Query: 601  VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSW 660
            +  K  LD+   P  YQ R +G KG+   W    D  R    +     +   + L+I   
Sbjct: 701  I--KRILDLETLPACYQGRISGAKGI---WMVDRDDSRFKGGDRDFGLEITESQLKIMV- 754

Query: 661  TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSK-----LNQMLVDSDVAFEVLTAAC 715
               Q   LN Q++ +L    V       +    +S      L  + + + VA        
Sbjct: 755  AATQSFLLNLQVLKVLQHGGVGHSHIKKLIHQEVSIFYKEFLKVIHLSNGVACRKWLQKM 814

Query: 716  AEQGN----------------------TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGL 753
               G+                       A ++L +GF P   P+L  +   I    L  L
Sbjct: 815  KRFGDDGYSYKRQTRRIDNFFPSQYVEQAVLLLDSGFLPLKLPYLTQLFRRILKDYLDSL 874

Query: 754  REKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKG 813
            R K ++ V    +     D LGVL   +     S  +        GS    T   ++   
Sbjct: 875  R-KLKVSVSQSTYAYCIADPLGVLSPDEVHFGFSHKW------DDGSVVVGT---ELHDM 924

Query: 814  FVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVT 873
             V++A+ P   P DI+   AV   EL H  D +VFP  GD P  +  SG D DGD  +V 
Sbjct: 925  NVLVARLPAHLPTDIQKRRAVYKNELRHFKDVIVFPTTGDVPLASLLSGGDYDGDQCWVC 984

Query: 874  WDENLIPP-SKKSWPPMEYNAAEAKTL---TRPVDQ-RDIIEFFAK----HMVNENLGTI 924
            WD  ++   S   + P    ++E   L   + P++Q R I +F AK    +     LG  
Sbjct: 985  WDPIIVREFSNSHFDPTTIPSSEQLGLVCHSLPMNQVRSIDQFLAKVFLFNAKPSQLGPC 1044

Query: 925  CNAHVVHADHSEYGALDENC---ILLAELAATAVDFPKTG-----------KIVTMPAHL 970
               H     H+     D  C   ++LA L +  VD  K G           +   MP  L
Sbjct: 1045 TIEHETFCYHNN----DLGCKGAVMLAWLLSYLVDSKKAGLELPGKAWRRLRAEYMPVKL 1100

Query: 971  KPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDIN-PVDIHYDTDLEV 1029
            +   Y  F  ++   S   + +L  + +   D   ED     E     P+D H       
Sbjct: 1101 EQPAYKTFDHEKRNSSNIIDYLLFDVIKAESDRILEDFDRFCEEHSGLPIDPH------- 1153

Query: 1030 PESVDFIADAWN---QKCSYDGQLNGLLEQY 1057
                  + DAWN   Q+ + + Q  G LE Y
Sbjct: 1154 ------LVDAWNKAEQRAANEKQ-GGKLELY 1177


>gi|325093828|gb|EGC47138.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
          Length = 1387

 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 150/381 (39%), Gaps = 74/381 (19%)

Query: 549  KCAARMGQCFSSTYATVEVPPTEV----DPELPDIKRNGYVFSDGIGKITPDLAMEVAQK 604
            K   R+    S T ATV +   E+    DP        G V +DG   ++  L M VA  
Sbjct: 661  KLFQRLHLGLSRTLATVILRREEIIYVKDPP-------GTVMNDGCALMSKSLGMAVASA 713

Query: 605  LKLDVNPPPCAYQIRYAGCKGVVACWPAKGD---------GIRMSLRESMNKF---QSHH 652
            L LD +P    +Q R +G KGV   W    D         G  + + +S  K      H 
Sbjct: 714  LGLDGHP--AIFQARISGAKGV---WMVDLDDSRFKTGDRGFWLQITQSQLKIYPAPPHD 768

Query: 653  T--------TLEICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSK-----LN 698
            T        T E+  W+R   P  LN Q++ +L    + ++   ++    +S      L 
Sbjct: 769  TKPMDDTQLTFEVVQWSRPLSPASLNMQLLNILQHGGIRNDHIRNLIRQEMSSFYDEFLR 828

Query: 699  QMLVDSDV-------AFEVLTAACAEQ-------------GNTAAIMLSAGFNPQTEPHL 738
             +L  S V         + +T   +++                A ++L AGF P   P+L
Sbjct: 829  TLLCSSGVECRSWLQKMKWITNESSKRQSKRTDNFFPPQYAEQAIMLLDAGFLPLKLPYL 888

Query: 739  RGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKH 798
              +   +    L  L+ K +I V    +     D  GVL   +  +  S  +      +H
Sbjct: 889  TKIFRRLLQDYLDNLK-KLKITVSQSTFAYCVADPFGVLRPDEVHLGFSREW------EH 941

Query: 799  GSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTN 858
            GS   E   + V+     +A+ P     DI+   +V   EL H+ D +VFP  GD P  +
Sbjct: 942  GSASTELHDIDVL-----LARLPAHLATDIQKRRSVYKNELRHMKDVIVFPTTGDTPLAS 996

Query: 859  EASGSDLDGDLYFVTWDENLI 879
              SG D DGD  +V WD  ++
Sbjct: 997  LLSGGDYDGDQCWVCWDPIIV 1017


>gi|240277746|gb|EER41254.1| RNA-directed RNA polymerase [Ajellomyces capsulatus H143]
          Length = 1317

 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 150/381 (39%), Gaps = 74/381 (19%)

Query: 549 KCAARMGQCFSSTYATVEVPPTEV----DPELPDIKRNGYVFSDGIGKITPDLAMEVAQK 604
           K   R+    S T ATV +   E+    DP        G V +DG   ++  L M VA  
Sbjct: 591 KLFQRLHLGLSRTLATVILRREEIIYVKDPP-------GTVMNDGCALMSKSLGMAVASA 643

Query: 605 LKLDVNPPPCAYQIRYAGCKGVVACWPAKGD---------GIRMSLRESMNKF---QSHH 652
           L LD +P    +Q R +G KGV   W    D         G  + + +S  K      H 
Sbjct: 644 LGLDGHP--AIFQARISGAKGV---WMVDLDDSRFKTGDRGFWLQITQSQLKIYPAPPHD 698

Query: 653 T--------TLEICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSK-----LN 698
           T        T E+  W+R   P  LN Q++ +L    + ++   ++    +S      L 
Sbjct: 699 TKPMDDTQLTFEVVQWSRPLSPASLNMQLLNILQHGGIRNDHIRNLIRQEMSSFYDEFLR 758

Query: 699 QMLVDSDV-------AFEVLTAACAEQ-------------GNTAAIMLSAGFNPQTEPHL 738
            +L  S V         + +T   +++                A ++L AGF P   P+L
Sbjct: 759 TLLCSSGVECRSWLQKMKWITNESSKRQSKRTDNFFPPQYAEQAIMLLDAGFLPLKLPYL 818

Query: 739 RGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKH 798
             +   +    L  L+ K +I V    +     D  GVL   +  +  S  +      +H
Sbjct: 819 TKIFRRLLQDYLDNLK-KLKITVSQSTFAYCVADPFGVLRPDEVHLGFSREW------EH 871

Query: 799 GSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTN 858
           GS   E   + V+     +A+ P     DI+   +V   EL H+ D +VFP  GD P  +
Sbjct: 872 GSASTELHDIDVL-----LARLPAHLATDIQKRRSVYKNELRHMKDVIVFPTTGDTPLAS 926

Query: 859 EASGSDLDGDLYFVTWDENLI 879
             SG D DGD  +V WD  ++
Sbjct: 927 LLSGGDYDGDQCWVCWDPIIV 947


>gi|168064128|ref|XP_001784017.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
 gi|162664466|gb|EDQ51185.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
          Length = 1042

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 156/368 (42%), Gaps = 66/368 (17%)

Query: 668 LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ---GNTAAI 724
           L++ +I LLS  NVP   F    +  L  L+         F  L   C++    G+    
Sbjct: 557 LSQDLIFLLSVNNVPASFFLEHVEKALENLHSFFTTRGQVFREL-KRCSQDYDVGDQTLR 615

Query: 725 MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI 784
           M+ A   P   P ++  L  I   ++  LR K  + +P   +LMG  D            
Sbjct: 616 MIMANI-PMNNPQMQKNLKKISQDKIALLR-KGCVPLPQSCYLMGTCDPTKE-------- 665

Query: 785 QVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAV----DHPELH 840
           +V +P          +  A  K    + G V++ KNP  H GD+ + +AV     +P + 
Sbjct: 666 RVLKP----------NEVAVIKNGDKVLGKVLVYKNPGKHWGDVHVFDAVWDERLNPYVG 715

Query: 841 HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEA---K 897
                + F  +G+RP  +E + SDLDGD Y+V ++      ++ +   ++Y +++    +
Sbjct: 716 PANQTIFFSVRGNRPVVDEIANSDLDGDFYWVCFN------TQATNSFLDYFSSKVVFCQ 769

Query: 898 TLTRPVDQRDIIEFFAKHMVNENLG----------------TICNAH------VVHADH- 934
            +   +   D + F +K  ++EN G                T   AH      + +AD  
Sbjct: 770 LIGVRIAAVD-LSFHSKPTLDENRGEDKLPGWECKPMPLSATYWIAHMDRYLTLKYADEY 828

Query: 935 -SEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQS----YKS 989
             E   L E  + L ++   A+D  KTG+ V +   L+PK YP FM K+   S    Y S
Sbjct: 829 SEELELLSETILELIDIFYRALDADKTGEEVKLRRGLEPKCYPHFMRKQNQTSRRTYYTS 888

Query: 990 NKILGRLY 997
             ILG++Y
Sbjct: 889 TSILGQIY 896


>gi|384496670|gb|EIE87161.1| hypothetical protein RO3G_11872 [Rhizopus delemar RA 99-880]
          Length = 1225

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 131/305 (42%), Gaps = 46/305 (15%)

Query: 725  MLSAGFNPQTEPHLRGMLTCIRAAQLWG-----LREKARIFVPAGRWLMGCLDELGVLEG 779
            +L +GF+      L  +    R + ++      L+ K +I +     +    D +G+LE 
Sbjct: 702  LLDSGFD------LSNVFVATRISNIFKQLMAPLKSKYKIEIEQSCTVTCIPDPIGILEP 755

Query: 780  GQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
             + ++Q+S   +     K G R        +I G VV+A+NPC    D++ ++A+D P L
Sbjct: 756  DEVYLQLSTRKVDE---KTGIRAG------LILGDVVVARNPCGLKSDVQKVKAIDCPAL 806

Query: 840  HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYN-AAEA-- 896
                D ++F  KG+    ++  G D DGDL F  WD+ ++ P   S    E    A+A  
Sbjct: 807  RMYTDLIIFSTKGESSLASKLGGGDYDGDLVFCCWDQRIVEPFTASPVVKELERVAQAFE 866

Query: 897  -------KTLTRPVDQRDIIE--FFAKHMVNENLGTICNAHVVHADHSEYGALDENCILL 947
                   + +    D    ++  F    M +  LG   N   V A+ S     D +   L
Sbjct: 867  KDKTTVGQQIGSFADTEKALQSHFIKAQMPDGTLGLYENWRTVLAEKSSLD--DPDVSYL 924

Query: 948  AELAATAVDFPKTGKIVTMPAHLKPKL------YPD-FMGK-----EAYQSYKSNKILGR 995
            A++ A  VD PK G  + + A+ + +       YP  FM K     EA +S+K      +
Sbjct: 925  AQMCARLVDAPKQGLCLKLSAYQRDRTNYSKIPYPTWFMDKKNKKREAQKSFKETSDAYK 984

Query: 996  LYRQS 1000
            L + S
Sbjct: 985  LPKNS 989



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 127/324 (39%), Gaps = 72/324 (22%)

Query: 428 PEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRV 487
           P+V  SNR  RK+    DRFL V        +M   +  Y + P                
Sbjct: 336 PKVSASNRFFRKFGQ--DRFLEVVLSATSSPSMVIKLKDYILKP---------------- 377

Query: 488 FKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGK----TSVLDIKKWMGRFT 543
                      F L  R F FL      ++D +  FF+ +G      S+  +  W     
Sbjct: 378 -----------FLLMQRVFRFLF-----IKDNALIFFATEGTDLEPISIQQVIDWHMPII 421

Query: 544 DK---NIAKCAARMGQCFSSTYATVEVPPTEVD------PELPDIKRNGYVFSDGIGKIT 594
           +    +++K A+RM   +SS+  T++  P+E++        +   K      +DG G I+
Sbjct: 422 ENWGMSMSKYASRMSLGYSSSIPTIQFEPSEIEYIDDIYSTISTTKDASACMTDGCGIIS 481

Query: 595 PDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAK--GDGIRMSLRESMNKFQS-- 650
                E+      D    PCA Q R AG KGV    P      G  + +R+S +KF++  
Sbjct: 482 CAAMREIMGCQATD--RLPCAIQGRIAGAKGVWIIAPDLDFNSGKYIKIRKSQDKFKTGL 539

Query: 651 ---------HHTTLE-----ICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSK 696
                    HH T +     IC +    P  LN Q I +L+   VP ++F  +    L +
Sbjct: 540 PQADSHLDPHHYTFDLVKNSICIY----PSNLNIQFIQVLAAGGVPTKVFVEILGEYLHR 595

Query: 697 LNQMLVDSDVAFEVLTAACAEQGN 720
           L   +V  +   ++L    A+ GN
Sbjct: 596 L-ATVVTKNQNVKILRDWVAKVGN 618


>gi|453087546|gb|EMF15587.1| hypothetical protein SEPMUDRAFT_123844 [Mycosphaerella populorum
            SO2202]
          Length = 1406

 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 150/382 (39%), Gaps = 91/382 (23%)

Query: 571  EVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACW 630
            E DPE+        V SDG  +++  +A + ++KL L   P     QIR AG KG+   W
Sbjct: 708  EYDPEM--------VMSDGCNRMSYWIAYQYSKKLCLKRVP--ATLQIRAAGAKGL---W 754

Query: 631  ----PAKGD-GIRMS---LRESMNKFQSHHTTLEICSWTRF-----------QPGFLNRQ 671
                PA GD  IR +   L  + ++ + H  T   C                +P  L+  
Sbjct: 755  YIDEPAHGDPDIRPAGPLLNLAPSQVKVHRDTFYGCDEETLSVNVVKANPGARPSLLHIG 814

Query: 672  IITLLSTLNVPDEMFWSMQDSMLSK-----LNQMLVDSDVAFEVLTAACAE----QGNTA 722
             + +L    VP E   ++   ++++     L  +  D  +      A+  E    +   A
Sbjct: 815  YLPILVDRGVPLENIRTLVRDLVTRQTDGFLEALAADGSLRLRQWIASHNEFFEARRREA 874

Query: 723  AI----------------MLSAGFNPQTEPHLRGMLTCI-----------------RAAQ 749
             I                ML AGF P+   +L   +  +                 ++  
Sbjct: 875  GIDLLAGFPKALEERIIQMLEAGFAPKQNKYLASEVKMLASSYFDLKNKNFKIELPKSTT 934

Query: 750  LWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQ 809
            LWG+ E      P    + G LD  G L  G+  +   EPF     +  G+R      + 
Sbjct: 935  LWGIAE------PKTGHMRGKLDPTGSLRPGEVCVCFEEPF---DVADVGTRVNFLDDID 985

Query: 810  VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDL 869
            ++     +A+NP + P DI+ + AV  P+L      ++F  +G RP  N+  G D DGD 
Sbjct: 986  IL-----VARNPAMGPSDIQKVRAVFKPQLAKYAGNIIFSARGMRPLANKLQGGDYDGDA 1040

Query: 870  YFVTWDENLIPPSKKS---WPP 888
            ++ TW+  L  P K +   W P
Sbjct: 1041 FWFTWEPLLTEPFKNAPAPWKP 1062


>gi|406863804|gb|EKD16851.1| hypothetical protein MBM_05320 [Marssonina brunnea f. sp.
            'multigermtubi' MB_m1]
          Length = 1323

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 106/474 (22%), Positives = 191/474 (40%), Gaps = 74/474 (15%)

Query: 549  KCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKITPDLAMEVAQKLK 606
            K   R     S T +TV + P ++     +I       V +DG G+++P LA+++ Q L 
Sbjct: 587  KLFNRTTLALSRTESTVVLMPDQIKIMAQNITFGDPKNVMNDGAGRMSPSLALKITQTLG 646

Query: 607  LDVNPPPCAYQIRYAGCKGV-------------VACWPAKGDGIRMSLRESMNKFQSHHT 653
            L   P   A+Q R    KG+             +  +P++   +R    +  +  +SH T
Sbjct: 647  LSYLP--AAFQGRIGEAKGLWITDLHYTGQDDWIETYPSQRKWVRKKTGDQESDDESHRT 704

Query: 654  -TLEICSWT--------RFQPGFLNRQIITLLSTLNVPDEMFWSMQDSML---------S 695
              +  CS          +F P  ++R    LL    + D +   +Q  +           
Sbjct: 705  FEVSKCSGPLKSADLNLQFLPILMDRAKDKLLMKRVLSDILKHGLQLRVQEIQEARDHPQ 764

Query: 696  KLNQMLVDSD----------VAFEV-LTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTC 744
               Q + DS+          + ++  L     E+ N   I+L AGF+P+    +  +   
Sbjct: 765  LFRQWVRDSNPNMKERERGSIGYKAGLPNVLEERLN---ILLDAGFHPKGIRFMEDLAKK 821

Query: 745  IRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAE 804
            +   ++  L+++  I V    +     D  GVLE G+ +I  S  F+ N     G+  + 
Sbjct: 822  VFTKRIDELKKRLNITVGRSTYAYMVPDFWGVLEEGEVYIDFSS-FVDNVSGLSGASPSG 880

Query: 805  TKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSD 864
            ++        +++A++P     DI+ ++AV   EL  L D ++F  KG     ++ SG D
Sbjct: 881  SQ--------ILVARSPAHFVSDIQKVKAVIREELVGLKDVIIFSVKGYPALADKLSGGD 932

Query: 865  LDGDLYFVTWDENLIPPSKKSWPP----------MEYNAAEAKTLTRPVDQRDIIEFFAK 914
             DGD+ +V W+  ++   + +  P          +  +    K L R +   D I  F K
Sbjct: 933  YDGDVAWVCWEPAIVDNFETAEVPKAIDLVARGLIRQDKTTYKDLVRGLSHEDGISLFLK 992

Query: 915  HMVNEN-----LGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKI 963
                 N     LGT C        +++     +   +L++L +  VD PK G I
Sbjct: 993  RSFEFNMRQGLLGT-CTTFKERVCYAQRSVDTKESRILSQLLSNLVDQPKQGFI 1045


>gi|297832164|ref|XP_002883964.1| hypothetical protein ARALYDRAFT_319567 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297329804|gb|EFH60223.1| hypothetical protein ARALYDRAFT_319567 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 893

 Score = 77.0 bits (188), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 117/490 (23%), Positives = 194/490 (39%), Gaps = 102/490 (20%)

Query: 579  IKRNGY--VFSDGIGKITPDLA------MEVAQKLKLDV-------NPPPCAYQIRY--- 620
            + +NG   + SDG G I+ DLA      +   + +K D+         PP   QIR    
Sbjct: 388  LDKNGKPRIHSDGTGYISEDLARMCPVNIFKGKNIKSDIIQGKTCGQEPPLLIQIRMFND 447

Query: 621  -AGCKGVVAC---WPAKGDGIRMSL-----RESMNKFQSHHTTLEICSWTRFQPGFLNRQ 671
             +  KG+       P +   +R S+      ++++ F + ++   + +    +   L++ 
Sbjct: 448  GSAVKGIFLLNKNLPPRTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAKLSKN 507

Query: 672  IITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVA------------FEVLTAACA--- 716
            ++ LLS   VP++ F  +  + L K N +      A            F  L   C+   
Sbjct: 508  LVALLSYGGVPNDFFLDILLNTLEKKNTVFFKIRAAGKGSMRSHMMALFLSLFVFCSCTS 567

Query: 717  ---EQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDE 773
                    A  M+ AG  P  EP+L+  L+ +   +   L+   R+ +    +LMG +D 
Sbjct: 568  LRNMDDKNALQMIMAGI-PLDEPYLKHHLSLLLKIKKDDLK-AGRLPIDESYYLMGTVDP 625

Query: 774  LGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEA 833
             G L+  +                                 V +  NP LH GDI IL+A
Sbjct: 626  TGELKEDE---------------------------------VCVILNPGLHFGDIHILQA 652

Query: 834  VDHPELHHLYD----CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS--W- 886
                 L          + FPQKG R   +E +G D DGD+YF++ +  L+   K S  W 
Sbjct: 653  TYVKTLEQYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWV 712

Query: 887  ---PPME-YNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDE 942
               PP + Y   +   L+    + ++   F K       G   +  +  A  S  G +D 
Sbjct: 713  SSSPPSKIYTGRKPSELSPEQLEEELFNMFLK------TGFSPSNVIGQAADSWLGIMDR 766

Query: 943  NCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKD 1002
               L  E    A+D PKTG  V +P  +K  ++P +M  E  + +KS  ILG ++     
Sbjct: 767  FLTLGDE---NAIDAPKTGTEVNLPFDVKADVFPHYM--ERNKIFKSISILGLIFDTVDS 821

Query: 1003 AYDEDISVSS 1012
               ED + S+
Sbjct: 822  HNAEDPTPSA 831


>gi|238505018|ref|XP_002383738.1| RNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
 gi|220689852|gb|EED46202.1| RNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
          Length = 1131

 Score = 77.0 bits (188), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 171/447 (38%), Gaps = 71/447 (15%)

Query: 539 MGRFTDKNIAKCA--ARMGQCFSSTYATVEVPPTEVDP-ELPDIKRNGYVFSDGIGKITP 595
           M R  +   A C    R+    S T+ATV + P+++ P E P+      V +DG   ++ 
Sbjct: 409 MSRDDNIKQANCKLFQRISLGLSKTFATVALKPSQILPLEEPE---GTPVMNDGCALMSR 465

Query: 596 DLAMEVAQKLKLDVNPPPCAYQIRYAGCKGV------VACWPAKGDGIRMSLRESMNKFQ 649
            LA  +   L +     P A+Q R AG KG+       +    + D + + + +S  K +
Sbjct: 466 SLASRICDSLGI-TGATPSAFQGRIAGAKGLWMVDKHNSTISTESD-VWIQISDSQLKIK 523

Query: 650 SH-----------HTTLEICSWTR-FQPGFLNRQIITLL---------------STLNVP 682
            H             T E+  W++      LN Q++ +L               + +   
Sbjct: 524 PHPAGWQEPVDEEKLTFEVVKWSKPLHTVDLNTQLLAILEHGGHIKEYVAGLTRAGIRAV 583

Query: 683 DEMFWSMQDS--------MLSKLNQMLVDSDVAF----EVLTAACAEQGNTAAIMLSAGF 730
            E F ++  S        ++ K+      S  A       +    A+       +  AGF
Sbjct: 584 YEDFATVVQSDSPVLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDVEAVVRLTEAGF 643

Query: 731 NPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPF 790
            P+T   LR  L       L    E+  I VP   +     D  GVL+  +        F
Sbjct: 644 APRTFRPLRKRLRKCLIGLLDQYVEQLHIEVPLSTYAFCIADPYGVLKEDEVHFG----F 699

Query: 791 LGNCFSKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFP 849
             N     G +F +     ++ G  V++A+ P   P DI+   AV  PEL H  D +VFP
Sbjct: 700 SSNWRDPEG-QFEDN----LLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFP 754

Query: 850 QKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS-WPPMEYNAAEAKTLTRPVDQRDI 908
             G  P  +  SG D DGD  +V WD+N++   + S    MEY A         V  +DI
Sbjct: 755 TVGTTPLAHMLSGGDYDGDTTWVCWDQNIVQKFRNSDLSTMEYPAEHFGLEEHNVPMKDI 814

Query: 909 IEF-------FAKHMVNENLGTICNAH 928
             +       F  ++   NLG     H
Sbjct: 815 DSWDEFLQSTFTFNLTMSNLGRCTVEH 841


>gi|224146916|ref|XP_002336366.1| rna-dependent RNA polymerase [Populus trichocarpa]
 gi|222834816|gb|EEE73265.1| rna-dependent RNA polymerase [Populus trichocarpa]
          Length = 320

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 130/316 (41%), Gaps = 60/316 (18%)

Query: 691 DSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQL 750
           ++ L   + +L + + A  V         N  A M+  G  P  EP+L+  L+ +   + 
Sbjct: 5   NNALEDAHGILSNKNAALRVALNYGDMDDNIVATMIGCGI-PLEEPYLQCRLSILMKEEK 63

Query: 751 WGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
             L+   +I VP   +LMG  D  G+LE  +  I +      +C                
Sbjct: 64  KSLK-GGKIPVPESYYLMGTADPTGLLESDEVCIIL------DCGQ-------------- 102

Query: 811 IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD----CLVFPQKGDRPHTNEASGSDLD 866
           I G V+I +NP LH GDI IL+A    EL          + FP KG R   +E SG D D
Sbjct: 103 ISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFD 162

Query: 867 GDLYFVTWDENLIPPSKKSWP--------------PMEYNAAEAKTLTRPVDQRDIIE-- 910
           GD++FV+ +  L+   K++ P              P E++  E +     +  R+  +  
Sbjct: 163 GDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPS 222

Query: 911 FFAKHMVNENLGTICNAHVVHADH----------------SEYGALDENCILLAELAATA 954
           F  K   ++ L T  +   V AD                  E   + EN  LL ++   A
Sbjct: 223 FITKFNASKLLATFSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDA 282

Query: 955 VDFPKTG--KIVTMPA 968
           +D PK G  +++T P+
Sbjct: 283 LDAPKKGGRRMITCPS 298


>gi|425774605|gb|EKV12907.1| RNA-directed RNA polymerase, putative [Penicillium digitatum Pd1]
 gi|425776464|gb|EKV14681.1| RNA-directed RNA polymerase, putative [Penicillium digitatum PHI26]
          Length = 1445

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 153/386 (39%), Gaps = 57/386 (14%)

Query: 539  MGRFTDKNIAKCA--ARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPD 596
            M +  + N + C    R+    S T+ATV++ PT+V     D  R   V +DG   I+  
Sbjct: 739  MPKTANANQSNCKLFQRISLGLSKTFATVKLKPTQVLRLRDDPTRT--VMNDGCALISRP 796

Query: 597  LAMEVAQKLKLDVNPPPCAYQIRYAGCKGV--VACWPA-----KGDGIRMSLRESMNKFQ 649
            LA ++  +L +    P C +Q R AG KG+  V C  +       D I + + +S  K  
Sbjct: 797  LANQICDQLGITAATPSC-FQGRIAGAKGLWMVDCHQSSITTLNDDNIWVQISDSQLKIH 855

Query: 650  SH-----------HTTLEICSWTR-FQPGFLNRQIITLLS-TLNVPDEMFWSMQDSMLSK 696
             H             T E+ +W +   P  LN Q++ +L    NV + +    +D + S 
Sbjct: 856  PHPQEWVDPVDDEKLTFEVVNWAKPLHPVDLNIQLLAILEYGGNVKEYIAKLTRDGVQSL 915

Query: 697  LNQML----VDSDVAFEVLTA---ACAEQGNTAAIMLS---------------AGFNPQT 734
             +  L     +S V    L        E G   A  L                AGF P+ 
Sbjct: 916  YDDFLEVLRSNSPVGCRALLQKLRPSGEDGTGKARRLEQWVTSDAESIIRFSEAGFAPRD 975

Query: 735  EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNC 794
               LR  L       L    E+ +I VP   +     D  GVL   +     S     N 
Sbjct: 976  FFPLRMKLRKFITWLLERHVEELKIQVPLSTYAYCIADPYGVLGPDEVHFGFS-----NN 1030

Query: 795  FSKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGD 853
            +     +F +     ++ G  V++ + P   P DI+  +AV   EL H  D +VFP  G+
Sbjct: 1031 WRDPQGQFEDN----LLDGVDVLVGRLPAHLPSDIQRRKAVWKTELRHFKDVIVFPTTGN 1086

Query: 854  RPHTNEASGSDLDGDLYFVTWDENLI 879
             P     SG D DGD  ++ WD  ++
Sbjct: 1087 FPLAGMLSGGDYDGDTPWICWDPIIV 1112


>gi|83773600|dbj|BAE63727.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 1260

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 115/481 (23%), Positives = 180/481 (37%), Gaps = 75/481 (15%)

Query: 539  MGRFTDKNIAKCA--ARMGQCFSSTYATVEVPPTEVDP-ELPDIKRNGYVFSDGIGKITP 595
            M R  +   A C    R+    S T+ATV + P+++ P E P+      V +DG   ++ 
Sbjct: 538  MSRDDNIKQANCKLFQRISLGLSKTFATVALKPSQILPLEEPE---GTPVMNDGCALMSR 594

Query: 596  DLAMEVAQKLKLDVNPPPCAYQIRYAGCKGV------VACWPAKGDGIRMSLRESMNKFQ 649
             LA  +   L +     P A+Q R AG KG+       +    + D + + + +S  K +
Sbjct: 595  GLASRICDSLGI-TGATPSAFQGRIAGAKGLWMVDKHNSTISTESD-VWIQISDSQLKIK 652

Query: 650  SH-----------HTTLEICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSMQD------ 691
             H             T E+  W++      LN Q++ +L       E    +        
Sbjct: 653  PHPAGWQEPVDEEKLTFEVVKWSKPLHTVDLNTQLLAILEHGGQIKEYVAGLTRAGIRAV 712

Query: 692  -----------------SMLSKLNQMLVDSDVAF----EVLTAACAEQGNTAAIMLSAGF 730
                             S++ K+      S  A       +    A+       +  AGF
Sbjct: 713  CEDFATVVQSDSPVLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDAEAVVRLTEAGF 772

Query: 731  NPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPF 790
             P+T   LR  L       L    E+  I VP   +     D   VL+  +        F
Sbjct: 773  APRTFRPLRKRLRKCLIGLLDQYVEQLHIEVPLSTYAFCIADPYRVLKEDEVHFG----F 828

Query: 791  LGNCFSKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFP 849
              N     G +F +     ++ G  V++A+ P   P DI+   AV  PEL H  D +VFP
Sbjct: 829  SSNWRDPEG-QFEDN----LLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFP 883

Query: 850  QKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS------WPPMEYNAAEAKTLTRPV 903
              G  P  +  SG D DGD  +V WD+N++   + S      +P   +   E     + +
Sbjct: 884  TVGTTPLAHMLSGGDYDGDTTWVCWDQNIVQKFRNSDLSTMEYPAEHFGLEEHNVPMKDI 943

Query: 904  DQRD--IIEFFAKHMVNENLGTICNAHVVHADHSEYGALDE-NCILLAELAATAVDFPKT 960
            D  D  +   F  ++   NLG      V H   S   ++D  N   LA L +  VD  K 
Sbjct: 944  DSWDEFLQSTFTFNLTMSNLGRCT---VEHEKISYDESIDSPNAKELACLLSHLVDGRKG 1000

Query: 961  G 961
            G
Sbjct: 1001 G 1001


>gi|317151716|ref|XP_001824860.2| RNA-directed RNA polymerase [Aspergillus oryzae RIB40]
          Length = 1291

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 115/481 (23%), Positives = 180/481 (37%), Gaps = 75/481 (15%)

Query: 539  MGRFTDKNIAKCA--ARMGQCFSSTYATVEVPPTEVDP-ELPDIKRNGYVFSDGIGKITP 595
            M R  +   A C    R+    S T+ATV + P+++ P E P+      V +DG   ++ 
Sbjct: 569  MSRDDNIKQANCKLFQRISLGLSKTFATVALKPSQILPLEEPE---GTPVMNDGCALMSR 625

Query: 596  DLAMEVAQKLKLDVNPPPCAYQIRYAGCKGV------VACWPAKGDGIRMSLRESMNKFQ 649
             LA  +   L +     P A+Q R AG KG+       +    + D + + + +S  K +
Sbjct: 626  GLASRICDSLGI-TGATPSAFQGRIAGAKGLWMVDKHNSTISTESD-VWIQISDSQLKIK 683

Query: 650  SH-----------HTTLEICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSMQD------ 691
             H             T E+  W++      LN Q++ +L       E    +        
Sbjct: 684  PHPAGWQEPVDEEKLTFEVVKWSKPLHTVDLNTQLLAILEHGGQIKEYVAGLTRAGIRAV 743

Query: 692  -----------------SMLSKLNQMLVDSDVAF----EVLTAACAEQGNTAAIMLSAGF 730
                             S++ K+      S  A       +    A+       +  AGF
Sbjct: 744  CEDFATVVQSDSPVLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDAEAVVRLTEAGF 803

Query: 731  NPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPF 790
             P+T   LR  L       L    E+  I VP   +     D   VL+  +        F
Sbjct: 804  APRTFRPLRKRLRKCLIGLLDQYVEQLHIEVPLSTYAFCIADPYRVLKEDEVHFG----F 859

Query: 791  LGNCFSKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFP 849
              N     G +F +     ++ G  V++A+ P   P DI+   AV  PEL H  D +VFP
Sbjct: 860  SSNWRDPEG-QFEDN----LLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFP 914

Query: 850  QKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS------WPPMEYNAAEAKTLTRPV 903
              G  P  +  SG D DGD  +V WD+N++   + S      +P   +   E     + +
Sbjct: 915  TVGTTPLAHMLSGGDYDGDTTWVCWDQNIVQKFRNSDLSTMEYPAEHFGLEEHNVPMKDI 974

Query: 904  DQRD--IIEFFAKHMVNENLGTICNAHVVHADHSEYGALDE-NCILLAELAATAVDFPKT 960
            D  D  +   F  ++   NLG      V H   S   ++D  N   LA L +  VD  K 
Sbjct: 975  DSWDEFLQSTFTFNLTMSNLGRCT---VEHEKISYDESIDSPNAKELACLLSHLVDGRKG 1031

Query: 961  G 961
            G
Sbjct: 1032 G 1032


>gi|398407389|ref|XP_003855160.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
 gi|339475044|gb|EGP90136.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
          Length = 1316

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 9/156 (5%)

Query: 725 MLSAGFNPQTEPHL-RGMLTCIRAAQLWGLREKA-RIFVPAGRWLMGCLDELGVLEGGQC 782
           +L +GF P   P+L R ++  ++    + L+++  +I +     LMG  D  G LE G+ 
Sbjct: 782 LLESGFVPTQCPYLARDVIDLVKYT--FDLKQRNFKIRLGRSTTLMGIADPKGCLEPGEV 839

Query: 783 FIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
            +  S PF+     +   +F      +V   F ++A+NP +   DI+ +  V  PEL HL
Sbjct: 840 HVNFSAPFIDPVTKE---QFQNLSSPEV--AFGLVARNPAMAAWDIQRVRFVYKPELKHL 894

Query: 843 YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENL 878
            D  VF  +G RP  ++  G D DGD +++ WD  L
Sbjct: 895 TDLAVFSSRGHRPLASKLQGGDYDGDTFWICWDRKL 930


>gi|393236487|gb|EJD44035.1| hypothetical protein AURDEDRAFT_114369 [Auricularia delicata
           TFB-10046 SS5]
          Length = 1203

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 119/292 (40%), Gaps = 28/292 (9%)

Query: 703 DSDVAFEVLTAACAEQ-GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761
           D D   E   AAC ++ G     +L A F+PQ+  +L  +L  +    +    +   I +
Sbjct: 676 DPDGVSESAVAACLDRWGEVCLRLLHARFHPQSCKYLYDILRSVIKTHIESFVKDYHIEL 735

Query: 762 PAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNP 821
           P         D  GVLE G+ F       L +    +G  F +     V+ G V++ ++P
Sbjct: 736 PLSAQAFIAPDPFGVLEVGEIFFHPRSHTLRDV---NGHEFDDN----VLLGDVLVGRHP 788

Query: 822 CLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
           C+ P D+R + AVD   L    D + F  KG R   N  SG D DGD   + W   ++ P
Sbjct: 789 CVLPTDVRKVVAVDSLALRPYRDIIFFSTKGTRSLANILSGGDYDGDTAVLIWQTEVVQP 848

Query: 882 SKKSW-----PPMEYNA---AEAKT----LTRPVDQRDIIEFFAKHMVNENLGTICNAHV 929
            + +      PP        AE ++    LT        + F    +    +G   N H+
Sbjct: 849 FQNAPLHLADPPANVETSFEAEMQSVKDLLTNGHFNHLRLSFLLSGLKKNPVGLYSNFHL 908

Query: 930 VHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGK 981
           +      Y   +E    LA ++   +D PKTGK       L P ++ +  GK
Sbjct: 909 LACYVQGY--RNEETRRLAHISGQLLDAPKTGK------RLVPGVFEEDKGK 952


>gi|409079756|gb|EKM80117.1| hypothetical protein AGABI1DRAFT_127795 [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 1114

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 115/268 (42%), Gaps = 49/268 (18%)

Query: 725 MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVP--AGRWLMGCLDELGVLEGGQC 782
            L +GF+PQT P LR  +  +  + +    E   I +P  AG W++   D  G LE  + 
Sbjct: 632 FLDSGFHPQTCPVLREKMHKVVRSAISRAVENYTIELPFSAGAWIIP--DPSGCLESNEV 689

Query: 783 FIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
           F Q S                +  +  +I G V+I ++PC  P D++  +A+D PELH  
Sbjct: 690 FFQCSRSLPA----------LDGTETHIITGDVLITRDPCRLPTDVQKWKAIDVPELHQY 739

Query: 843 YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP------PSKKSWPPMEYNAAEA 896
            D ++   +G R   +  +G D DGD   + W   L+       PS    PP+  ++   
Sbjct: 740 KDVIILSVQGPRRAADWLAGGDYDGDKAKLIWQPELVQDFVNAHPSFAD-PPLNLDSKFE 798

Query: 897 KTLTRPVDQRDIIEFFAK-------HMVNEN----LGTI---------CNAHVVHADHSE 936
                 ++ + + EF A+       + +NE     LGT+          N H V    + 
Sbjct: 799 ------IENKQVHEFLAEIEGCSEDNKINEVQKYLLGTLKDFTLVGKYSNFHEVSVYTNG 852

Query: 937 YGALDENCILLAELAATAVDFPKTGKIV 964
           Y +  +   LLA +  T +D  KTGK V
Sbjct: 853 YKS--KETKLLAYMFTTILDGRKTGKTV 878


>gi|320034225|gb|EFW16170.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 1289

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 141/385 (36%), Gaps = 79/385 (20%)

Query: 549 KCAARMGQCFSSTYATVEVPPTEV-------DPELPD---IKRNGYVFSDGIGKITPDLA 598
           K   R+    S T  TV V P  +       D  L D   +K +    SDG   ++  LA
Sbjct: 573 KIFQRLALGLSRTIPTVVVRPEHIIIHPRHIDIPLEDRGNMKSSQPDMSDGCALMSVSLA 632

Query: 599 MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMN------------ 646
             +   L L    P C +Q R AG KG+   W   G  I     E +             
Sbjct: 633 NRIKDCLGLKEENPSC-FQGRIAGAKGI---WMVDGRNIAFKGEECIQISGSQLKTKPHP 688

Query: 647 -----KFQSHHTTLEICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQM 700
                    H  T E+ SW+R  +P  LN Q++ +L    V  +   ++    ++   Q 
Sbjct: 689 SDCRMMLDDHQLTFEVVSWSRELRPVNLNVQLLMVLQHGGVQTDRLKNLVRCEMNTWYQE 748

Query: 701 LVDSDVAFEVLTAA-CAEQG------------------NTAAIMLSAGFNPQTEPHLRGM 741
             D  +  E+ + A   +QG                    A ++L +GF+P    +L   
Sbjct: 749 FKDI-ITNEIASRAWVQKQGLYEKRKTRRIDDFPTENVEQAILLLDSGFHPLKSVYLMNR 807

Query: 742 LT------CIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCF 795
           L       C R   L       +I +P   +     D   VL   +  +  S+P+    +
Sbjct: 808 LKTFLDDYCARLDSL-------KIRIPESTYAYCIADPYNVLAEDEVHLGFSKPWDSEGY 860

Query: 796 SKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDR 854
           +              + G  V++ +NP   P DI+   AV   EL +  D +VFP  G  
Sbjct: 861 TD-------------LDGMDVLVGRNPAHLPSDIQKRRAVFKKELRYFKDVIVFPTAGAL 907

Query: 855 PHTNEASGSDLDGDLYFVTWDENLI 879
           P  +  SG D DGD  +  WD  L+
Sbjct: 908 PLASMLSGGDYDGDQVWTCWDPQLV 932


>gi|168049572|ref|XP_001777236.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
 gi|162671338|gb|EDQ57891.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
          Length = 1040

 Score = 73.9 bits (180), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 184/467 (39%), Gaps = 80/467 (17%)

Query: 587 SDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGC---KGVV--ACWPAKGD--GIRM 639
           ++G  +I+PD+A  +   +       P  Y     GC   KG+     W       G+++
Sbjct: 452 TEGTSEISPDVARLLPCSVCKGRVGEPKGYPTLVQGCLFWKGMAIKGTWQVNHQLKGLQI 511

Query: 640 SLRESMNKFQSHHTTLEICSWTRFQ-----------PGFLNRQIITLLSTLNVPDEMFWS 688
             R SM K  S     +I +   F+              L++ +I LLS  NVP   F  
Sbjct: 512 LYRPSMVKVTSDPILKDIPTIKSFEVVNTNTCYKLEEARLSQDLIILLSINNVPASFFLE 571

Query: 689 MQDSMLSKLNQMLVDSDVAFEVLTAACAEQ--GNTAAIMLSAGFNPQTEPHLRGMLTCIR 746
           + +  L KL     +    F  L +   +   G+    M+ A   P + P ++  L  I 
Sbjct: 572 LVEKALEKLRTFFTERGQVFRELKSCSPDYAVGDQTLRMIMANI-PMSNPQMQNNLKKIT 630

Query: 747 AAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETK 806
             ++  LR K  + +P   +LMG  D            +V +P          +  A  K
Sbjct: 631 QDKIALLR-KGCLPLPQSYYLMGTSDPTKE--------KVLKP----------NEVAIVK 671

Query: 807 KLQVIKGFVVIAKNPCLHPGDIRILEAV----DHPELHHLYDCLVFPQKGDRPHTNEASG 862
             + + G V++ KNP  H GD+ I +AV     +P +      + F  +G+RP  +E + 
Sbjct: 672 NGEKVIGKVLVYKNPGKHWGDVHIFDAVWDERLNPYVGPTKHAIFFSVRGNRPVVDEIAN 731

Query: 863 SDLDGDLYFVTWDENLIPPS---KKSWPPMEYNAAEAKT-LTRPVDQRDIIEFFAKHMVN 918
           SDL GDL+   W  +L  PS   K+    + Y   +  + LT    +  + + F K    
Sbjct: 732 SDLCGDLF---WLISLFTPSLPWKRIGEKINYPIGDGPSNLTSRALEYTLFDKFLKSRFT 788

Query: 919 -----ENLGTICNAHVVH----ADHSEYG----ALDENCILLAELAATAVDFPKTGK--- 962
                   G    AH+       D  EY      + E+   L ++   A+D  KTG+   
Sbjct: 789 PYKPMSQAGIFWTAHMDRYLSLKDADEYSDELELISESLEELIDIFYRALDADKTGEELC 848

Query: 963 ---------IVTMPAHLKPKLYPDFMGKEAYQS---YKSNKILGRLY 997
                     V +P  L+P  +P F+ KE   +   Y S  ILG++Y
Sbjct: 849 LHRHTFAWMSVKLPRRLEPDCFPHFL-KEIQTNRTYYTSTSILGQIY 894


>gi|303319845|ref|XP_003069922.1| RNA dependent RNA polymerase family protein [Coccidioides posadasii
            C735 delta SOWgp]
 gi|240109608|gb|EER27777.1| RNA dependent RNA polymerase family protein [Coccidioides posadasii
            C735 delta SOWgp]
          Length = 1372

 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 141/385 (36%), Gaps = 79/385 (20%)

Query: 549  KCAARMGQCFSSTYATVEVPPTEV-------DPELPD---IKRNGYVFSDGIGKITPDLA 598
            K   R+    S T  TV V P  +       D  L D   +K +    SDG   ++  LA
Sbjct: 656  KIFQRLALGLSRTIPTVVVRPEHIIIHPRHIDIPLEDRGNMKSSQPDMSDGCALMSVSLA 715

Query: 599  MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMN------------ 646
              +   L L    P C +Q R AG KG+   W   G  I     E +             
Sbjct: 716  NRIKDCLGLKEENPSC-FQGRIAGAKGI---WMVDGRNIAFKGEECIQISGSQLKTKPHP 771

Query: 647  -----KFQSHHTTLEICSWTR-FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQM 700
                     H  T E+ SW+R  +P  LN Q++ +L    V  +   ++    ++   Q 
Sbjct: 772  SDCRMMLDDHQLTFEVVSWSRELRPVNLNVQLLMVLQHGGVQTDRLKNLVRCEMNTWYQE 831

Query: 701  LVDSDVAFEVLTAA-CAEQG------------------NTAAIMLSAGFNPQTEPHLRGM 741
              D  +  E+ + A   +QG                    A ++L +GF+P    +L   
Sbjct: 832  FKDI-ITNEIASRAWVQKQGLYEKRKTRRIDDFPTENVEQAILLLDSGFHPLKSVYLMNR 890

Query: 742  LT------CIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCF 795
            L       C R   L       +I +P   +     D   VL   +  +  S+P+    +
Sbjct: 891  LKTFLDDYCARLDSL-------KIRIPESTYAYCIADPYNVLAEDEVHLGFSKPWDSEGY 943

Query: 796  SKHGSRFAETKKLQVIKGF-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDR 854
            +              + G  V++ +NP   P DI+   AV   EL +  D +VFP  G  
Sbjct: 944  TD-------------LDGMDVLVGRNPAHLPSDIQKRRAVFKKELRYFKDVIVFPTAGAL 990

Query: 855  PHTNEASGSDLDGDLYFVTWDENLI 879
            P  +  SG D DGD  +  WD  L+
Sbjct: 991  PLASMLSGGDYDGDQVWTCWDPQLV 1015


>gi|171685170|ref|XP_001907526.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942546|emb|CAP68197.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1478

 Score = 73.6 bits (179), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 111/517 (21%), Positives = 199/517 (38%), Gaps = 88/517 (17%)

Query: 523  FFSEDGKT-------SVLDIKKWMGRFTDKNIA--------------------KCAARMG 555
            FF+E G         +V  + + MGR TD  ++                    K  +R+ 
Sbjct: 703  FFAETGTNFQRAKALTVPPLNEPMGRHTDCTVSQMLNWLLNLDEPKNQSQPHLKLFSRIQ 762

Query: 556  QCFSSTYATVEVPPTEVDPELPD-IKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPC 614
               S T+ TV    +++  +  D +   G V +DG+G+++  +A ++   + L     P 
Sbjct: 763  LGLSKTFPTVIFSASQIFVQPQDMLSPIGKVMNDGVGRMSRTVARKIRDIMGL--TEIPS 820

Query: 615  AYQIRYAGCKGV-VACWPAKGDGIRMSLRESMNKFQS-------HHTTLEICSW-TRFQP 665
            A Q R    KG+ +      GD   +    S  K++        H  TLEI ++ T  + 
Sbjct: 821  AVQGRIGSAKGMWIMDVLDTGDEEWIETWLSQRKWECDPQTVDIHQRTLEIRAYATELKS 880

Query: 666  GFLNRQIITLLST-LNVPDEMFWSMQDSMLSKLNQMLVDSDVAFE--------------- 709
              LN Q + +L        +M  ++   + + L +   D   AF+               
Sbjct: 881  AGLNLQFLPVLEDRAKDKAQMKRAIGARLTNDLKKEFDDQKAAFKHPLLLRQWLHENWSG 940

Query: 710  ----------VLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARI 759
                       L     ++     ++L +GF+P+ + +++ +   ++  +   L  K  I
Sbjct: 941  RADRVKNEVAFLGGLPEKKEEVLNLLLHSGFDPKHQKYIQDIAWELQKQKCDILSTKLNI 1000

Query: 760  FVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAK 819
             V    ++   +D   VLE G+  +  S  F G+      +  ++          V++A+
Sbjct: 1001 KVGRSAYIYMVVDFWEVLEEGEVHVGFSSKFRGDADDTSYTLLSDCD--------VLVAR 1052

Query: 820  NPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD---- 875
            +P     D++ + AV  P+LH L D +VF  KG+ P   + SG D DGD+ +V WD    
Sbjct: 1053 SPAHFASDVQRVRAVFKPQLHALKDVIVFSSKGNVPLAEKLSGGDYDGDMAWVCWDPLIV 1112

Query: 876  ENLIPPSKKSWPPME-YNAAEAKTLTRPVDQR----------DIIEFFAKHMVNENLGTI 924
            EN +       P +  Y   +  T +  +  R          D+IE   +  +  N   +
Sbjct: 1113 ENFVNAVVPEEPDLSAYLGKDKTTFSDLMLARGEQSPDAAVYDMIEKSFQFSMQPNFLGM 1172

Query: 925  CNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
            C  +     +      DE  I L  L    VD  K G
Sbjct: 1173 CTNYKEKLCYHNNSVGDETAIWLGALVGKLVDQSKQG 1209


>gi|384493387|gb|EIE83878.1| hypothetical protein RO3G_08583 [Rhizopus delemar RA 99-880]
          Length = 1222

 Score = 73.6 bits (179), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 106/249 (42%), Gaps = 24/249 (9%)

Query: 725 MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI 784
           +L +GF+  +   +   +T I    +  +  K ++ V     +    D  G LE  + F+
Sbjct: 701 LLDSGFD-LSNAFIASRVTFIFRQVMKSVNTKYKVEVAQSCTVTCIPDPTGTLEPDEVFL 759

Query: 785 QVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD 844
           Q+S         K   R      L  I G V++ +NPC    D++ ++AVD P L    D
Sbjct: 760 QLST-------RKVDERTGVCAGL--ITGDVIVTRNPCGLKSDVQKVKAVDCPALRMYTD 810

Query: 845 CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPME----YNAAE--AKT 898
            ++F  KGD    ++  G D DGDL +  WD+ ++ P K S    E    Y A E    T
Sbjct: 811 LIIFSVKGDTSLASKLGGGDYDGDLIYCCWDQRIVEPFKPSPVVKELKQVYQAFEQDKTT 870

Query: 899 LTRPVDQRDIIE------FFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAA 952
           + + V      E      F +  + +  LG   N   V A+ +     D N   LA++ A
Sbjct: 871 VGQQVSSHTNTEKALQMSFISAQIPDGTLGLYENWRTVLAERTSLD--DPNVSYLAQMCA 928

Query: 953 TAVDFPKTG 961
             VD PK G
Sbjct: 929 RLVDAPKQG 937



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 117/289 (40%), Gaps = 69/289 (23%)

Query: 427 PPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTR 486
           PP++  SNR+ RK+    DRFL +T  +    +M  +   +++ P++             
Sbjct: 335 PPKIAASNRLFRKFGQ--DRFLEITTSNACSPSMIRHFKDFYMKPLL------------- 379

Query: 487 VFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDG----KTSVLDIKKWMGRF 542
                         L  R F FL      ++D +  FF+ +G      S+  +  W    
Sbjct: 380 --------------LMQRVFRFLF-----IKDATLVFFATEGIDLEPISIQQVIDWHLPI 420

Query: 543 TDK---NIAKCAARMGQCFSSTYATVEVPPTEV----DPELPDIKRNGYVFSDGIGKITP 595
           T+     ++K  +RM   +SS+  T++  P ++    D      K +    +DG G I+ 
Sbjct: 421 TENWGMTMSKYVSRMSLGYSSSIPTIQFEPDQIEYIDDVYSKTAKGSAACMTDGCGIISC 480

Query: 596 DLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAK--GDGIRMSLRESMNKFQS--- 650
               E+      D    PCA Q R  G KG+    P      G  + +R+S NKF++   
Sbjct: 481 AAMKEIMGCQTTD--ELPCAVQGRIGGAKGIWIISPDLDFNSGKYIKIRKSQNKFKTGLP 538

Query: 651 --------HHTTLE-----ICSWTRFQPGFLNRQIITLLSTLNVPDEMF 686
                   HH T +     IC +    P FLN Q I +L+   VP E+F
Sbjct: 539 QSNLRLDPHHYTFDLVKNSICVY----PSFLNTQFIQVLAAGGVPTEVF 583


>gi|393232270|gb|EJD39854.1| hypothetical protein AURDEDRAFT_171128 [Auricularia delicata
           TFB-10046 SS5]
          Length = 1291

 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 15/178 (8%)

Query: 702 VDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761
            D   A E LT A       A  ML +GF+P T P LR  +  +         +K R+ +
Sbjct: 787 TDHGDAQEYLTPAA-----MALRMLFSGFDPVTCPILRSHIRTVLRTSTEQYLKKFRVEI 841

Query: 762 PAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNP 821
                 M   D   VL   + F+  S+  L N            + +  + G V++ +NP
Sbjct: 842 TMSAEAMIISDTSLVLGENEIFLSSSKVLLDNS----------GRTMNHLSGDVLVYRNP 891

Query: 822 CLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
              P DI+ ++AV  PEL H  D +VF  KG R   ++ +G D DGD   V WD++++
Sbjct: 892 VRLPCDIQKVKAVYKPELDHYRDVIVFSAKGTRSLASKLAGGDYDGDTAVVIWDQDIV 949


>gi|110738636|dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]
          Length = 339

 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 24/215 (11%)

Query: 826  GDIRILEAVDHPELHHLYD----CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
            GDI IL+A     L          + FPQKG R   +E +G D DGD+YF++ +  L+  
Sbjct: 2    GDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEN 61

Query: 882  SKKS--W----PPMEYNAAEAKTLTRPVDQRDIIE-------FFAKHMVN---ENLGTIC 925
             K S  W    PP + N+  A +   P +  + +        F A +++    ++  TI 
Sbjct: 62   FKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIM 121

Query: 926  NAHVVHADH--SEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEA 983
            +  ++  D    E   + +  + L ++   A+D PK G  V +P  LKP ++P +M ++ 
Sbjct: 122  DRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERD- 180

Query: 984  YQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP 1018
             + ++S  ILG ++   K    E+ S SSE+   P
Sbjct: 181  -KKFQSTSILGLIFDFVKSQTTEEPSPSSEISKLP 214


>gi|119183445|ref|XP_001242762.1| hypothetical protein CIMG_06658 [Coccidioides immitis RS]
 gi|392865671|gb|EAS31478.2| hypothetical protein CIMG_06658 [Coccidioides immitis RS]
          Length = 1372

 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 134/359 (37%), Gaps = 70/359 (19%)

Query: 567  VPPTEVDPELPD---IKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGC 623
            + P  +D  L D   +K +    SDG   ++  LA  +   L L    P C +Q R AG 
Sbjct: 681  IHPRHIDIPLEDRGNMKSSQPDMSDGCALMSVSLANRIKDCLGLKEENPSC-FQGRIAGA 739

Query: 624  KGVVACWPAKGDGIRMSLRESMN-----------------KFQSHHTTLEICSWTR-FQP 665
            KG+   W   G  I     E +                      H  T E+ SW++  +P
Sbjct: 740  KGI---WMVDGRNIAFKGEECIQISGSQLKTKPHPSDCRMMLDDHQLTFEVVSWSKELRP 796

Query: 666  GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQM---LVDSDVAFE--VLTAACAEQGN 720
              LN Q++ +L    V  +   ++    ++   Q    ++ +++A    V      E+  
Sbjct: 797  VNLNVQLLMVLQHGGVQTDRLKNLVRCEMNTWYQEFKGIITNEIASRAWVQKQGLYEKRK 856

Query: 721  T-------------AAIMLSAGFNPQTEPHLRGMLT------CIRAAQLWGLREKARIFV 761
            T             A ++L +GF+P    +L   L       C R   L       +I +
Sbjct: 857  TRRIDDFPTENVEQAILLLDSGFHPLKSVYLMNRLKTFLDDYCARLDSL-------KIRI 909

Query: 762  PAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGF-VVIAKN 820
            P   +     D   VL   +  +  S P+    ++              + G  V++ +N
Sbjct: 910  PESTYAYCIADPYNVLAEDEVHLGFSRPWDSEGYTD-------------LDGMDVLVGRN 956

Query: 821  PCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
            P   P DI+   AV   EL H  D +VFP  G  P  +  SG D DGD  +  WD  L+
Sbjct: 957  PAHLPSDIQKRRAVFKKELRHFKDVIVFPTAGALPLASMLSGGDYDGDQVWTCWDPQLV 1015


>gi|388853529|emb|CCF52928.1| uncharacterized protein [Ustilago hordei]
          Length = 1363

 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 7/161 (4%)

Query: 725 MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI 784
           ML  GF+P++ P+L  +L  I    +  + ++  I VP     M   D  G LE G+   
Sbjct: 779 MLLVGFHPKSCPYLAELLVEIADNAMKRIIKRFTIPVPRSAEAMVMPDPTGTLEEGEIQF 838

Query: 785 QVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD 844
           +    F G+      +R    K   V +G V++ ++PCL P DIR + AV  PEL    D
Sbjct: 839 R----FSGDRLLDPETRL---KLNHVPEGDVLVTRHPCLLPTDIRKVRAVVRPELSTYED 891

Query: 845 CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS 885
            +VF  KG  P  +   G D DGD   V W+  L+ P + S
Sbjct: 892 VVVFSIKGQGPLASLLGGGDHDGDTIRVFWEPKLVEPFQNS 932


>gi|440493517|gb|ELQ75977.1| RNA-directed RNA polymerase QDE-1 [Trachipleistophora hominis]
          Length = 1082

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 36/162 (22%)

Query: 410 IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFI 469
           I  +R + + P    C+ P+  LSNR+LR + ++    +R+TF +    T + NV+ Y  
Sbjct: 828 IQPIRTVHVYPLSIACMYPKNNLSNRILRNFSNM----IRITFKN----TCDENVMEY-- 877

Query: 470 APIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGK 529
                                +R I+S G  +  R + F+A SSSQLR  SAWF S   K
Sbjct: 878 ---------------------IREIMSNGITI-DRPYYFVATSSSQLRSNSAWFISPYRK 915

Query: 530 TSVLD----IKKWMGRFTDKNIAKCAARMGQCFSSTYATVEV 567
            +VL     ++ WMG     NI K   R+G   SST++  EV
Sbjct: 916 GNVLVGSDYVRNWMGVIECDNIGKYMIRVGLGLSSTFSMFEV 957


>gi|237843439|ref|XP_002371017.1| RNA dependent RNA polymerase domain-containing protein [Toxoplasma
           gondii ME49]
 gi|211968681|gb|EEB03877.1| RNA dependent RNA polymerase domain-containing protein [Toxoplasma
           gondii ME49]
 gi|221502280|gb|EEE28013.1| RNA-dependent RNA polymerase, putative [Toxoplasma gondii VEG]
          Length = 1186

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 131/509 (25%), Positives = 188/509 (36%), Gaps = 141/509 (27%)

Query: 510 AFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDK-NIAKCAARMGQCFSSTYATVEVP 568
           A SSS  R   A     + + S   I   MG F    +      R+G CFSST  T++V 
Sbjct: 351 AMSSSLHRAQDAPLEDRNKELSAEAILSRMGVFNSSISPGVLTKRLGICFSSTLPTIDVR 410

Query: 569 PTEVDPELPDI--------------KRNG-------------------YVFSDGIGKITP 595
             E+   +PD+              +R G                   ++F+DG G I+ 
Sbjct: 411 DEEML-LVPDVTSSAVTAAMSGEAQRRKGDEERRISSRAIKLDPNSPEFIFTDGSGAISL 469

Query: 596 DLAMEVAQKL-KLDVNPPPCAYQIRYAGCKGVVACWPAKGDGI-------RMSLRESMNK 647
           DL   +   L  L  +    A+QIR  G KG++   PA             + + +SM K
Sbjct: 470 DLWRRIVACLPALRTS---SAFQIRLGGIKGMLLLHPAFPLPRPPAPRLKHLLISQSMYK 526

Query: 648 FQSHH----------------------------TTLEICSWTRFQPGFLNRQIITLLSTL 679
           F S                                LEI  ++R  P FLNRQ+I LL TL
Sbjct: 527 FHSRSRIRKSAEANPGKAKLAWRFSDMASVSLLQCLEINDFSRRLPYFLNRQVILLLDTL 586

Query: 680 NVPDEMFWSMQDSMLSKLNQMLVDSDVAF-----EVLTAACAEQGNTAAIMLSA-GFNPQ 733
            V   +F  +Q  ML      L D D        +  +   +    T    +S  G +P+
Sbjct: 587 GVEFSVFDRLQRRML----HFLRDIDTRGRKPRRDAESLGTSRFAQTCLEFVSVHGVSPK 642

Query: 734 TEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE---------GGQCFI 784
            EP LR  L  +R +    LR+KARIFV  G  L G  D    L           G+ + 
Sbjct: 643 -EPFLRACLEAMRNSLADDLRKKARIFVEKGANLFGVPDFTHSLAYDHGWRSSPSGRLYA 701

Query: 785 QVSE---------------PFLGNCFSKHGSRFAET--------KKL------------Q 809
            + E               P      S+HGS   E         ++L            +
Sbjct: 702 GLPEVCVHVTKSPVSDSEIPRRTAIASRHGSLSPEADAEAERPKRRLSSCGSHSLGAGAE 761

Query: 810 VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDL 869
           +I+G V + +NPCL PGDI++  AV + +L         P+  D P    +  S L GD 
Sbjct: 762 LIQGVVAVCRNPCLLPGDIQLCFAVGYDDL---------PE--DSP-LRRSLASGLGGDA 809

Query: 870 YFVTWDENLIPPSKKSWPPMEYNAAEAKT 898
             +   + ++ PS    P     AA A T
Sbjct: 810 GLLACRDVIVFPSPPLPPAKSSFAANAST 838



 Score = 44.7 bits (104), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 13/122 (10%)

Query: 921  LGTICNAHVVHADHSE-YG--------ALDENCILLAELAATAVDFPKTGKIVTMPAHLK 971
            LG +  AH+  A   + YG        AL   C+ LA LA  AVD P+TG +V MP  L 
Sbjct: 1063 LGRVSKAHMRLAHRPDIYGQRNWRQAKALHPKCLKLAALATLAVDAPQTGAVVVMPQELA 1122

Query: 972  PKLYPDFMGKEAYQSYKSNKILGRLYRQSKD---AYDEDISVSSEVDINP-VDIHYDTDL 1027
             +  P FM   A    ++N       R+  D   A  E +SV     ++P  ++H +TD+
Sbjct: 1123 CRQIPHFMATAAVSQAEANLPPCHERRRCDDCLHALLEKVSVGCSARLHPYTELHLETDV 1182

Query: 1028 EV 1029
             +
Sbjct: 1183 HM 1184


>gi|406700852|gb|EKD04014.1| RNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
           8904]
          Length = 1087

 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 142/343 (41%), Gaps = 53/343 (15%)

Query: 585 VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGD---GIRMSL 641
           + SDG G ++  +   +      D+  PPC+ Q+R  G KGV++    + +      + L
Sbjct: 447 ILSDGCGLMSQKI---LHHPFFADLRWPPCSVQMRLGGSKGVLSLMSREQEEEYDADVVL 503

Query: 642 RESMNKFQSHHT--------TLEICSWTRFQPGF-LNRQIITLLSTLNVPDEMFWSMQDS 692
           R SM K +S           TL++      + G  L+ + I ++    VP ++  +  + 
Sbjct: 504 RPSMIKSKSAAGFSDDPSVLTLDVLKVDGLKVGCNLSSEAIIIMEDRGVPPDVLIAKAEL 563

Query: 693 MLSKLNQMLV--------DSDVAFEVLTAA--------------CAEQGNTAAIMLSAGF 730
              K+ + L+        + DV   +L A               C + G +  +   AG 
Sbjct: 564 EFEKIRESLLPVPHPGENEDDVRQRLLHAVYTLGGVGSEREKRRCRQLGKSTKV---AGL 620

Query: 731 NPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCL--DELGVLEGGQCFIQVSE 788
           + ++            A +    R  +   +P  + L   +  D LGVL+  + +I  S 
Sbjct: 621 SLESTQQDEYEEDTSVAEKSLTDRAVSDFKLPVDQSLSALIVPDTLGVLKPNEIYIAPSS 680

Query: 789 PFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVF 848
             L N         +  + +  ++G V+I ++PC  P D+R + AV H +L HL DC+V 
Sbjct: 681 AALVNP--------STMRPMSCVEGDVLIFRSPCKLPTDVRKMRAVYHSKLKHLQDCIVM 732

Query: 849 PQKGDRPHTNEAS---GSDLDGDLYFVTWDENLIPPSKKSWPP 888
                    + AS   G D DGD   V WDE+L+ P + +  P
Sbjct: 733 SADSAMCTASPASLLAGGDYDGDTATVIWDEDLVKPFRNAPEP 775


>gi|221481781|gb|EEE20151.1| RNA-dependent RNA polymerase, putative [Toxoplasma gondii GT1]
          Length = 1186

 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 140/583 (24%), Positives = 224/583 (38%), Gaps = 140/583 (24%)

Query: 411 VEVRRLVITPTKAYCLPPEVELSNRVLRKYKD--LADRFLRVTFMDEGLQTMNANVLSYF 468
           + V ++++TP K        EL +R+ R+Y +   A   +R+ F++E  + M++++    
Sbjct: 301 IPVLQILVTPLKVLLKGVYSELGSRLTRQYANEVAAGLLVRLAFVEEDGKAMSSSLHRAQ 360

Query: 469 IAPIV---RDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSS----QLRDCSA 521
            AP+    ++++  +   +  VF    S +S G      K   + FSS+     +RD   
Sbjct: 361 DAPLEDRNKELSAEAILSRLGVFN---SSISPGVLT---KRLGICFSSTLPTIDVRDEEM 414

Query: 522 WFFSEDGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKR 581
               +   ++V          T     +   R G+        +     ++DP  P+   
Sbjct: 415 LLVPDVTSSAV----------TAAMSGEAQRRKGE----EERRISSRGIKLDPNSPE--- 457

Query: 582 NGYVFSDGIGKITPDLAMEVAQKL-KLDVNPPPCAYQIRYAGCKGVVACWPAKGDGI--- 637
             ++F+DG G I+ DL   +   L  L  +    A+QIR  G KG++   PA        
Sbjct: 458 --FIFTDGSGAISLDLWRRIVACLPALRTS---SAFQIRLGGIKGMLLLHPAFPLPRPPA 512

Query: 638 ----RMSLRESMNKFQSHH----------------------------TTLEICSWTRFQP 665
                + + +SM KF S                                LEI  ++R  P
Sbjct: 513 PRLKHLLISQSMYKFHSRSRIRKSAESNPGKAKLAWRFSGMASVSFLQCLEINDFSRRLP 572

Query: 666 GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAF-----EVLTAACAEQGN 720
            FLNRQ+I LL TL V   +F  +Q  ML      L D D        E  +   +    
Sbjct: 573 YFLNRQVILLLDTLGVEFSVFDRLQRRML----HFLRDIDTRGRKPRREAESLGTSRFAQ 628

Query: 721 TAAIMLSA-GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE- 778
           T    +S  G +P+ EP LR  L  +R +    LR+K RIFV  G  L G  D    L  
Sbjct: 629 TCLEFVSVHGVSPK-EPFLRACLEAMRNSLADDLRKKTRIFVEKGANLFGVPDFTHSLAY 687

Query: 779 --------GGQCFIQVSE---------------PFLGNCFSKHGSRFAET--------KK 807
                    G+ +  + E               P      S+HGS   E         ++
Sbjct: 688 DHGWRSSPSGRLYAGLPEVCVHVTKSPVSDSEIPRRTAIASRHGSLSPEADAEAERPKRR 747

Query: 808 L------------QVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRP 855
           L            ++I+G V + +NPCL PGDI++  AV + +L         P+  D P
Sbjct: 748 LISCGSHSLGAGAELIQGVVAVCRNPCLLPGDIQLCFAVGYDDL---------PE--DSP 796

Query: 856 HTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKT 898
               +  S L GD   +   + ++ PS    P     AA A T
Sbjct: 797 -LRRSLASGLGGDAGLLACRDVIVFPSPPLPPAKSSFAANAST 838



 Score = 41.6 bits (96), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 13/122 (10%)

Query: 921  LGTICNAHVVHADH---------SEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLK 971
            LG +  AH+  A            +  AL   C+ LA LA  AVD P+TG +V MP  L 
Sbjct: 1063 LGRVSKAHMRLAHRPDIYWQRNWRQAKALHPKCLKLAALATLAVDAPQTGAVVVMPQELA 1122

Query: 972  PKLYPDFMGKEAYQSYKSNKILGRLYRQSKD---AYDEDISVSSEVDINP-VDIHYDTDL 1027
             +  P FM   A    ++N       R+  D   A  + +SV     ++P  ++H +TD+
Sbjct: 1123 CRQIPHFMATAAVSQAEANLPPCHERRRCDDCLHALLDKVSVGCSARLHPYTELHLETDV 1182

Query: 1028 EV 1029
             +
Sbjct: 1183 HM 1184


>gi|238599737|ref|XP_002394960.1| hypothetical protein MPER_05070 [Moniliophthora perniciosa FA553]
 gi|215464849|gb|EEB95890.1| hypothetical protein MPER_05070 [Moniliophthora perniciosa FA553]
          Length = 346

 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 43/201 (21%)

Query: 416 LVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRD 475
           +  TPT+     P    S+R++R+YK   D F+RV F +E       +          R+
Sbjct: 158 VTFTPTRMITEGPYPTQSHRIIRRYKGFEDHFIRVDFCEEDRTKYGDD----------RE 207

Query: 476 ITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSE-----DGKT 530
           +    F +      RV +IL  GF L GR F FLA+S S LR  S WF SE     +G  
Sbjct: 208 VDSIPFLKG-----RVGNILKRGFPLGGRHFQFLAYSGSGLRSHSVWFMSEFHHPLEGLV 262

Query: 531 SVLDIKKWMGRFTDKNI---------------------AKCAARMGQCFSSTYATVEVPP 569
           +   I+  +G F D  I                     +K  AR+G  F++T  +V +  
Sbjct: 263 NAAKIRDSIGDFRDLRIEEYPEQERRFYQADQDLLRHPSKYGARLGLAFTATRPSVRIRR 322

Query: 570 TEVDPELPDIKRN-GYVFSDG 589
            + D  +PDI+ +   +F+DG
Sbjct: 323 DQWDI-VPDIEGDKSRLFTDG 342


>gi|145531992|ref|XP_001451757.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419423|emb|CAK84360.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1257

 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/409 (18%), Positives = 169/409 (41%), Gaps = 56/409 (13%)

Query: 495  LSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKW-MGRFTDKNIAKCAAR 553
            L+ GF +C  ++ FL +++ +LR    W      K S  ++  + +  F   +  +  A 
Sbjct: 629  LTEGFTICSEQWKFLGWNNKELRSNIIWM----NKVSNKELDNYILANFKQNSTLQQKAE 684

Query: 554  MGQCFSSTYA---TVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVN 610
            +   F + +    T E     +      I  N +      G+I+ +L  ++ +   + +N
Sbjct: 685  VKSRFRNFFIDGLTTEFKQLIIVVIRNQINENNF---SQFGQISRNLIDKIRE---IFMN 738

Query: 611  PPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNR 670
                  ++ + G + ++       D I + L      F S +  + I  + +++  FLNR
Sbjct: 739  QEISVVKVVFNGVQYILQLNNNLKDNI-IQLNSQYKIFSSFNDQITIIDYNKYRGAFLNR 797

Query: 671  QIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACA-----EQGNTAAIM 725
             +I L   + V +++F  + +  L ++++  +   V+ ++ +  C      EQ N   +M
Sbjct: 798  GLIRLFYQMGVKEDVFIQLLNWHLGQISKAFIVRSVSLDLKSELCGLSPIIEQIN---VM 854

Query: 726  LSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQ 785
                 N +    ++ +   ++  ++  L++K  I V     L G +D+ G+L  G+  I 
Sbjct: 855  KRNYLNEKNCLFIQKVYEKLKLLEIQQLKQKYNILVEKAERLFGVVDQYGILNEGEV-IC 913

Query: 786  VSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIA------KNPCLHPGDIRILEAVDHPEL 839
            + +P                 ++Q ++G +++       +   L+   +  LE +   + 
Sbjct: 914  IRKP---------------NDQVQYLEGKLIVVEDCNQDRQKTLNVIGLSRLEVIGRLKN 958

Query: 840  HHLYD----CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKK 884
               YD    C++F  K       + + +    + YFV+WD+ LI   +K
Sbjct: 959  KTAYDEYINCIIFSNK-------QQNSTPFCTNTYFVSWDKRLISKRQK 1000


>gi|302883308|ref|XP_003040555.1| hypothetical protein NECHADRAFT_106579 [Nectria haematococca mpVI
           77-13-4]
 gi|256721441|gb|EEU34842.1| hypothetical protein NECHADRAFT_106579 [Nectria haematococca mpVI
           77-13-4]
          Length = 936

 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 168/406 (41%), Gaps = 80/406 (19%)

Query: 583 GYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGV-VACWPAKGDGIRMSL 641
           G + +DGIG+++P L  EV   L L+  P     Q R    KG+ +    + GD   + +
Sbjct: 320 GVIMNDGIGRLSPSLMREVGNALSLESIP--LVIQGRIGSAKGLWITDMTSVGDEKWIEI 377

Query: 642 RESMNK-----FQSHHTTLEICSWTRFQPGFLNRQII--TLLSTLNVPDEMFWSMQDSML 694
             S  K     F   H TLE+      + G ++++++  T++  + V      S  +   
Sbjct: 378 YSSQRKWACDWFDPAHRTLEVFV-PILEAGAIDKELMRKTIVQHMAV---QLRSDLERAK 433

Query: 695 SKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLR 754
           + + Q     D  F  +     +  +    ++  GF+P                +L  L 
Sbjct: 434 NAMRQPESQGDSGF--VGGLPKDFADIMNFLVDGGFDP---------------LKLQFLN 476

Query: 755 EKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAE-TKKLQVIKG 813
           E               LD+L V       +   E  L  CFS   S F + T++L  ++G
Sbjct: 477 E---------------LDKLNVK-----VLAADEVHL--CFS---SIFNDGTRELHDLEG 511

Query: 814 F-VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFV 872
             V++ + P   P DI+ ++AV  PEL HL D ++FP  GD+P   + SG + DG+  ++
Sbjct: 512 MDVLVGRCPAHLPSDIQKVKAVFRPELRHLKDIIIFPCTGDKPLAQKLSGGNYDGNRAWI 571

Query: 873 TWDENL--------IPPSKKSWPPME-YNAAEAKTL--------TRPVDQRDIIEFFAKH 915
            WD ++        IPP     P  E Y     + L         +    R + E FA H
Sbjct: 572 CWDPDMVNNFEGVDIPPK----PSFERYFLPNTRQLGGLFSCHGKKHFLDRLLEEAFAFH 627

Query: 916 MVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
           +    +G IC +H     + +    +E+ I L+ L +  VD  K+G
Sbjct: 628 LAPTFIG-ICTSHKEKLAYHKNSISEESVINLSWLLSDLVDQDKSG 672


>gi|242216941|ref|XP_002474274.1| predicted protein [Postia placenta Mad-698-R]
 gi|220726566|gb|EED80511.1| predicted protein [Postia placenta Mad-698-R]
          Length = 998

 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 122/300 (40%), Gaps = 53/300 (17%)

Query: 498 GFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD----KNIAKCAAR 553
           G  L    ++FL F+   +++    FF ED   SV     ++G   D        K AAR
Sbjct: 74  GLLLRDEHYTFLGFTDGHVKEGKLVFFREDASWSVARFMDYIGNLRDVYSAYGYGKYAAR 133

Query: 554 MGQCFSSTYATVEVPPTEVDPELPDIK-RNGYVFSDGIGKITPDLAMEVAQKLKLDVNPP 612
           +   FSST  +++VP  +    +PD + R+G + SDG G I    AM+V +     + P 
Sbjct: 134 LALSFSSTVESLDVPFVKA-ARIPDRRARDGSLHSDGCGLIRHSFAMDVCR--NNGIAPD 190

Query: 613 PCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQI 672
            C +QIR  G KG++  +P              N+F                        
Sbjct: 191 TCVFQIRRGGIKGLLVRYPD-------------NQFDK---------------------- 215

Query: 673 ITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTA------AIML 726
           +TL   + +   +F  M    L  +  +L + D A + +         TA      AI+L
Sbjct: 216 VTL--RMAIRRAIFEKMLQDQLDLIGCILHNRDQAEKYIKGELDASNTTAFNQDLYAILL 273

Query: 727 SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQV 786
           +   +   EP++   L   +  Q   L +K  + V    ++ G +DE GVLE  + F+ +
Sbjct: 274 AK--HDLNEPYVEWKLRQFQQQQCNLLHKKLNLRVEDSCYVFGVIDESGVLEEDEVFLNL 331



 Score = 42.4 bits (98), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 862 GSDLDGDLYFVTWDENLIP-----PSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHM 916
           G DLDGD YFVTW+  LIP     P  ++  P   N    + LT        ++ F +H 
Sbjct: 345 GRDLDGDEYFVTWEPGLIPRDMPEPQHRAGTPTA-NTKPPRRLTEDAMNDAALDTFIRHK 403

Query: 917 VNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
            N+ L       +  AD + + A       LA +  +A+D  K+G
Sbjct: 404 YNKTLRFAAKKWLDVADATPHLANYPYAQELAPIIESALDCIKSG 448


>gi|392597508|gb|EIW86830.1| hypothetical protein CONPUDRAFT_115565 [Coniophora puteana
           RWD-64-598 SS2]
          Length = 1143

 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 19/164 (11%)

Query: 721 TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCL-----DELG 775
           TA  +L +GF PQ  P LR  LT +  + +     + ++ VP     M C+     D  G
Sbjct: 662 TAMALLDSGFTPQECPVLRDKLTAVVKSTVDRHVARYKLDVP-----MSCIAWMVPDPFG 716

Query: 776 VLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVD 835
           +L   +  I+ S+    N   K GS      K Q + G V++ ++PC  P D++ + AV 
Sbjct: 717 ILAPDEVHIRSSQ---DNLLQKDGS------KAQTVLGSVLLTRHPCKLPTDVQKVTAVQ 767

Query: 836 HPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
             EL    D +V   +GDR   +  +G D DGD   V W+  +I
Sbjct: 768 RGELAGYTDVIVCSIQGDRRFADLLAGGDYDGDKAIVIWEPTII 811


>gi|429863502|gb|ELA37949.1| RNA-dependent RNA polymerase, partial [Colletotrichum
           gloeosporioides Nara gc5]
          Length = 989

 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 158/396 (39%), Gaps = 73/396 (18%)

Query: 532 VLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRN-GYVFSDGI 590
           +LD    + R  D+   K  AR+    S T A   +   ++     D+    G V +DG+
Sbjct: 531 MLDWLLQLDRNEDQLYLKLFARIQLGLSKTTAVAVLDQDQIRHMQKDVVSPIGQVMNDGV 590

Query: 591 GKITPDLAMEVAQKLKL-DVNPPPCAYQIRYAGCKGV-------------VACWPAKGDG 636
           G+++  LA +V   L+L DV   P A Q R    KG+             +  WP++   
Sbjct: 591 GRMSLSLARKVRDVLELSDV---PSAIQGRLGSAKGMWIIDVEDTGSDIWIETWPSQ--- 644

Query: 637 IRMSLRESMNKFQSHHTTLEICSWT----------RFQPGFLNR----QIITLLSTLNV- 681
                + + +     H TLEI  +           +F P   +R    QI+  +   NV 
Sbjct: 645 ----RKWNCDFLHQEHRTLEIKDFVAEPRSANLNIQFLPILEDRAKDKQIMRKVVGDNVL 700

Query: 682 ---PDEM------------FWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIML 726
               DE+            F    D   +   + L  S V F  L      +    + + 
Sbjct: 701 RQLSDELEALRNAIKHPLQFRKWVDENSTARKKRLAHSSVPF--LAGLPESKEEQLSYLG 758

Query: 727 SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQV 786
             GF P  +  ++ M+  +++ +   + +K  I +P   +L   +D  G+LE  +  +  
Sbjct: 759 DGGFEPTKQKFMQDMMWKLQSKKCENVTKKMSIRIPNSAYLYMVVDFWGILEENEVHVCF 818

Query: 787 SEPFLGNCFSK---HGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLY 843
           S  F    FS    HG               V++A++P     DI+ ++AV  PEL  L 
Sbjct: 819 SSTFRTEGFSDSMLHGCD-------------VLVARSPAHLVSDIQRVKAVFKPELRALK 865

Query: 844 DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
           + +VFP KGD    ++ SG D DG   +V W+  ++
Sbjct: 866 NVIVFPAKGDVALADKLSGGDYDGGRAWVCWEPAIV 901


>gi|426198482|gb|EKV48408.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
          Length = 1114

 Score = 70.1 bits (170), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 114/268 (42%), Gaps = 49/268 (18%)

Query: 725 MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVP--AGRWLMGCLDELGVLEGGQC 782
            L +GF+P+T P LR  +  +  + +    E   I +P  AG W++   D  G L   + 
Sbjct: 632 FLDSGFHPKTCPVLREKMHKVVHSAISRAVENYTIELPFSAGAWIIP--DPSGCLGSNEV 689

Query: 783 FIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
           F Q S                +  +  +I G V+I ++PC  P D++  +A+D PELH  
Sbjct: 690 FFQCSRSLPA----------LDGTETHIITGDVLITRDPCRLPTDVQKWKAIDVPELHQY 739

Query: 843 YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP------PSKKSWPPMEYNAAEA 896
            D ++   +G R   +  +G D DGD   + W   L+       PS    PP+  ++   
Sbjct: 740 KDVIILSVQGPRRAADWLAGGDYDGDKAKLIWQPELVQDFVNANPSFAD-PPLNLDSKFE 798

Query: 897 KTLTRPVDQRDIIEFFAK-------HMVNEN----LGTI---------CNAHVVHADHSE 936
                 ++ + + EF A+       + +NE     LGT+          N H V    + 
Sbjct: 799 ------IENKQVHEFLAEIEGCSEDNKINEVQKYLLGTLKDFTLVGKYSNFHEVSVYTNG 852

Query: 937 YGALDENCILLAELAATAVDFPKTGKIV 964
           Y +  +   LLA +  T +D  KTGK V
Sbjct: 853 YKS--KETKLLAYMFTTILDGRKTGKTV 878


>gi|299747734|ref|XP_001837224.2| hypothetical protein CC1G_00360 [Coprinopsis cinerea okayama7#130]
 gi|298407654|gb|EAU84841.2| hypothetical protein CC1G_00360 [Coprinopsis cinerea okayama7#130]
          Length = 1039

 Score = 70.1 bits (170), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 15/170 (8%)

Query: 721 TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
           T   +L +GF+P   P L   L  +   ++  L    RI VP     M   D+ G+L+ G
Sbjct: 527 TVLALLQSGFHPGFCPVLAEKLKAVIRTRVSRLTHSYRIEVPMSCMAMIVPDKRGILKEG 586

Query: 781 QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIR--ILEAVDHPE 838
           + F + S     +   + G      +K  +I G V+I + PC  P DI+    +AVDHP 
Sbjct: 587 EIFFRSSH---RDLLDRDG------EKTDIITGDVLITRYPCKLPTDIQKASCKAVDHPG 637

Query: 839 LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPP 888
           LH L   ++   KG R   +   G D DGD   + W     PP  +++ P
Sbjct: 638 LHDLVGVIILSTKGTRRAADFIGGGDYDGDKAMIIWH----PPMVEAFTP 683


>gi|326483110|gb|EGE07120.1| RNA-directed RNA polymerase [Trichophyton equinum CBS 127.97]
          Length = 1286

 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 123/532 (23%), Positives = 190/532 (35%), Gaps = 126/532 (23%)

Query: 427 PPEVELSNRVLRKYKDLADRFLRVTF--------------MDEGLQTMNANVLSYFIAPI 472
           P ++E S+R  R+Y   ADRFL +                  + L    +N   Y I   
Sbjct: 460 PLKLEKSHRFARRYG--ADRFLEILLPSKHPSKSGRDAEIFGKALGKWLSNEYHYLIGRR 517

Query: 473 VRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSS----SQLRDCSAWFFSEDG 528
            R   L     K++         +  F   GRK    A         L   S    + + 
Sbjct: 518 WRAFYLEDLKSKSK---------ANSFSGSGRKAFLFAVDGEDFLGTLPGISPMDETSEN 568

Query: 529 KT--SVLDIKKW---MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG 583
            T  +V  +  W    GR T +  +K   R+    S T AT+ + P E    + D     
Sbjct: 569 HTPMTVEQLVDWHIHYGRNTHQEYSKLFTRIRLGLSRTTATITLRPEEF---IYDDDPRQ 625

Query: 584 YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGD------GI 637
              SDG   ++  L   +A  + L  +  P  +Q R AG KGV     AK D      G+
Sbjct: 626 EKMSDGFAMMSRSLGRAIADSICL--SKVPTCFQGRIAGAKGVWVV--AKDDQDIHVKGL 681

Query: 638 R---------MSLRESMNK-----------FQSHHTTLEICSWTRF-QPGFLNRQIITLL 676
           R         + +  S  K           F  H  T ++ S+++  QP  LN Q + +L
Sbjct: 682 RHFETERGYWLVINASQLKVQPPPCDTSLMFDKHQLTFDVSSYSQPPQPVHLNTQFLMVL 741

Query: 677 STLNVPDEMFWSMQDSMLSKL-NQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTE 735
                  E   S+      K  ++ L+  +       A   + G  A+  + A  N  T 
Sbjct: 742 QDRGTNKEYILSLIPKEADKFYSEFLLVQNGDSAACRAWVRQNGGDASSQIPA-LNESTF 800

Query: 736 PHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQ--VSEPFLGN 793
           P  R +              +  +F+ AG            L     F++    E FLG+
Sbjct: 801 PPSRTV--------------QLNMFLDAG-----------FLPSNLAFVRRLFKENFLGD 835

Query: 794 CFSKHGSRFAETKKLQVIKGF------------------------VVIAKNPCLHPGDIR 829
              K      E  K+++ K                          V++A+ P   P DI+
Sbjct: 836 FVQK-----LEALKIKIPKSTYKAQIHLDLGDSWEDGTTDLDGIDVLVARAPAHLPSDIQ 890

Query: 830 ILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
              AV HP L +L +  +FP KG+ P  +  SG D DGD  +V WD+ ++ P
Sbjct: 891 KCRAVFHPALRYLKNVAIFPTKGEVPLASLLSGGDYDGDEVWVCWDQEIVKP 942


>gi|242216295|ref|XP_002473956.1| predicted protein [Postia placenta Mad-698-R]
 gi|220726900|gb|EED80835.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1264

 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 9/155 (5%)

Query: 725 MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI 784
           +L AGF P   P L   L  + A ++       +I VP         D  GVLE GQ   
Sbjct: 793 LLQAGFQPLKLPLLYEKLRKVVADRIEDYIRNYKITVPRSAEAFIIPDPYGVLEEGQIHF 852

Query: 785 QVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD 844
           + ++               E     ++ G V+I +NP   P D+R ++AV HP+L    +
Sbjct: 853 KSTQNLKDPL---------EESNPTIVTGDVLIYRNPTRVPSDVRKVKAVSHPKLDKYVN 903

Query: 845 CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
            +V P KG R   N  +G D+DGD+    +D +L+
Sbjct: 904 VIVLPVKGSRSLANILAGGDVDGDVCTCIFDPDLV 938


>gi|325190799|emb|CCA25290.1| RNAdependent RNA Polymerase1 (RDR1) putative [Albugo laibachii Nc14]
          Length = 557

 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 112/273 (41%), Gaps = 36/273 (13%)

Query: 921  LGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMG 980
            LG   NAH+   D+S+ G+ D + + LA + +  VD  +  + + +   L P +YPDFM 
Sbjct: 7    LGIASNAHLARCDYSDKGSFDPDSMKLAWICSLQVDGHRAEEHLQVIRDLSPPIYPDFME 66

Query: 981  KEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAW 1040
             E + S++S+K LG LYR SK     D S      +   + H + +  V     + A   
Sbjct: 67   SERF-SHRSSKSLGTLYRSSKILTLLDHSC-----LKYDEQHVNDEFMVGNYTKYAALTK 120

Query: 1041 NQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFR 1100
                 Y      L+  Y    E EL +G I               ER + ++    +++R
Sbjct: 121  ILYRQYSRSTAALMRMYGAVLEGELASGLIIKTDDLYRTDYFRFGERCRDAFFKNVRQYR 180

Query: 1101 QVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFA 1160
            ++F  +   C  L+E E+  L    ASAWY   +  +          Q+       LSF 
Sbjct: 181  KIFSVL---CGTLNEFERCEL----ASAWYYAVFSCK--------NGQNR-----FLSFG 220

Query: 1161 WIANDYL----------ARIKIRCREMANIDTS 1183
            WI  D L           R K+    + N++ S
Sbjct: 221  WIIMDELLMSFSINQAQTRTKLHSAPLQNMNNS 253


>gi|336376861|gb|EGO05196.1| hypothetical protein SERLA73DRAFT_68825 [Serpula lacrymans var.
           lacrymans S7.3]
 gi|336389793|gb|EGO30936.1| hypothetical protein SERLADRAFT_432597 [Serpula lacrymans var.
           lacrymans S7.9]
          Length = 1094

 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 17/185 (9%)

Query: 721 TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
           T  ++L AGF P   P L   L  I    +    ++ R+ VP         D  G L  G
Sbjct: 606 TVMVLLDAGFTPGDCPILADKLKHIIDTSVDNYVQRYRVDVPMSCIAFMVPDPTGTLGPG 665

Query: 781 QCFIQVSEP-FLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
           +  I+ S P FL  C         +  +  ++ G V++ ++PC  P D++ + AV+  EL
Sbjct: 666 EIHIKSSHPKFL--C--------EDGTETDIVLGDVLLTRHPCKLPTDVQKVRAVEKAEL 715

Query: 840 HHLYDCLVFPQKG-DRPHTNEASGSDLDGDLYFVTWDENLIPPSKK-----SWPPMEYNA 893
            H  D +V P KG +R   +  +G D DGD     W + ++ P K      S PP +  A
Sbjct: 716 RHFKDVIVCPVKGTNRRFADLLAGGDYDGDKAIAIWQKEIVSPFKNADLKYSHPPADLPA 775

Query: 894 AEAKT 898
             +K 
Sbjct: 776 QFSKN 780


>gi|297832166|ref|XP_002883965.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297329805|gb|EFH60224.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 934

 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 124/273 (45%), Gaps = 29/273 (10%)

Query: 817  IAKNPCLHPGDIRILEAVDHPELHHLYD----CLVFPQKGDRPHTNEASGSDLDGDLYFV 872
            + +NP LH GDI +L+A     L          + FPQKG R   +E +G D DGD+YF+
Sbjct: 584  VYRNPGLHFGDIHVLKATYVKALEDYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFI 643

Query: 873  TWDENLI-------PPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAK---------HM 916
            + +  L+       P    S P   Y+  +   L+    + ++ + F K          M
Sbjct: 644  SRNPKLLEYFKPSEPWVSSSKPSKIYSGRKPSELSEEELEEELFKMFLKARFCKRDVIGM 703

Query: 917  VNENLGTICNAHVVHADHS--EYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKL 974
              +    I +  +   D S  E     +N + L ++   A+D PK G  V +P  L+ K 
Sbjct: 704  AADCWLGIMDPLLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKN 763

Query: 975  YPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVD 1034
            +P +M ++  + ++S  ILG ++  + D+++ +    SE+      + Y  D  VP+S  
Sbjct: 764  FPHYMERDPKRDFRSTSILGLIF-DTVDSHNAEEPPPSEIS----KLWYFEDEPVPKSHM 818

Query: 1035 FIADAWNQKCSYDGQLNGLLEQYKVNREEELVT 1067
                +W +  +Y  +++  +E+    ++++L  
Sbjct: 819  DKFTSWYE--NYRAEMSQAMEETDKVKKKQLAN 849


>gi|336365378|gb|EGN93729.1| hypothetical protein SERLA73DRAFT_163465 [Serpula lacrymans var.
           lacrymans S7.3]
          Length = 1089

 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 126/588 (21%), Positives = 212/588 (36%), Gaps = 137/588 (23%)

Query: 490 RVRSILSG-GFYLCGRKFS---------FLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWM 539
           ++R  LSG    LCGR +          ++  S    +     F+ ++ + S  +  KW 
Sbjct: 355 QLRGFLSGVKLVLCGRIYVPFHAKDNSLYMMESDEDYQRKPLPFYGDEHRLSFAEFVKWH 414

Query: 540 GRFT---DKNIAKCAARMGQCFSSTYATVEVPPTEV----DPELPDIKRNGY-----VFS 587
              +   ++ I+K + R     S++   +E  P ++    D   P  K  G        +
Sbjct: 415 NPLSLNSNQPISKWSTRWALGLSTSVPVLEFAPEDIFSIDDKIAPHDKSQGKPPAAKCMT 474

Query: 588 DGIGKITPDLAMEVAQKLKLDVNPP-PCAYQIRYAGCKGVVACWPAKGDGI-----RMSL 641
           DG G I       + Q +++   P  P A Q R AG KG+    P   +       ++ +
Sbjct: 475 DGCGFIN---GAGLTQIMRIMEYPNRPTAVQGRIAGSKGMWVLHPDPSEQFADGPPKIWI 531

Query: 642 RESMNKFQ--------SHHTTLEICSWTRFQ-PGFLNRQIITLLSTLNVPDEMF------ 686
           R S +K +          H   ++ + +R   P  ++ Q I  LS   VP+E+       
Sbjct: 532 RPSQDKIKLPPLALVDRAHLIFDLLAPSRTTIPSRISAQTIVNLSFNGVPNEVITSLMKE 591

Query: 687 -----------WSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNT-------------- 721
                      W+  D+M+S    +     V    L    A Q                 
Sbjct: 592 GLGEEVKSLTEWNGPDAMVSVWRAVERAGHVVHSRLRKRAAGQARALGLGRDRSEKDAEQ 651

Query: 722 ----------AAIMLSAGFNPQTEPHLRGMLTCIRAA----QLWGLREKARIFV------ 761
                     A+  LS G++ Q        +T I+A      L  L +K +I +      
Sbjct: 652 DSDDDFGKEEASSPLSPGYDGQPSSVYESAMTLIQAGFHPINLQPLFDKLKIILTMVINQ 711

Query: 762 -----------PAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
                       A  +++   D  GVL+ G+   + SE           +  A   +   
Sbjct: 712 YVSSFHMPVQESADAYIIP--DPFGVLKEGEIHFRSSESL---------TNPATGAQFDT 760

Query: 811 IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
           ++G V++ +NP   P DI+ + AV HP+L + Y  +VF  KGDR   +   G    GD  
Sbjct: 761 VRGEVLVTRNPTRLPSDIQKVTAVSHPKLDNYYGVIVFSTKGDRSLASWLGG----GDTV 816

Query: 871 FVTWDENLIPPSKKSWPPME-----YNAAEAK------------TLTRPVDQRDIIEFFA 913
            + W + L+   K S P  E      NA E+             TL+    Q++      
Sbjct: 817 TLIWSKPLVDSFKNS-PFTEELVGLLNAFESHVESVMDFDERVVTLSAGQAQKEFQTILL 875

Query: 914 KHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
             +    +G     H +     EYG   E  + +A +  T +D  KTG
Sbjct: 876 LGLAETKVGLYSKFHDLAV--YEYGYSSEQAVRMAYMFTTCLDSSKTG 921


>gi|401882100|gb|EJT46373.1| RNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
           2479]
          Length = 1106

 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 145/360 (40%), Gaps = 68/360 (18%)

Query: 585 VFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDG---IRMSL 641
           + SDG G ++  +   +      D+  PPC+ Q+R  G KGV++    + +      + L
Sbjct: 447 ILSDGCGLMSQKI---LHHPFFADLRWPPCSVQMRLGGSKGVLSLMSREQEEEYEADVIL 503

Query: 642 RESMNKFQSHH--------TTLEICSWTRFQPGF-LNRQIITLLSTLNVPDEMFWSMQDS 692
           R SM K +S           TL++      + G  L+ + I ++    VP ++  +  + 
Sbjct: 504 RPSMIKSKSAAGFSDDPSVLTLDVLKVDGLKVGCNLSSEAIIIMEDRGVPPDVLIAKAEL 563

Query: 693 MLSKLNQMLV--------DSDVAFEVLTAA--------------CAEQGNTAAIMLSAGF 730
              K+ + L+        + DV   +L A               C + G +  +   +  
Sbjct: 564 EFEKIRENLLPVPHPGENEDDVRQRLLHAVYTLGGVGSEREKRRCRQLGKSTKVAGLSLE 623

Query: 731 NPQTEPHLRGMLTC----IRAAQLWGLREKARIFV-------------PAGRWLMGCL-- 771
           + Q + H           +    +W + +K +  V             P  + L   +  
Sbjct: 624 STQQDEHEEDTSVAENGFLPDESVW-MSQKLKFMVRSLTDRAVSDFKLPVDQSLSALIVP 682

Query: 772 DELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRIL 831
           D LGVL+  + +I  S   L N  +         + +  ++G V+I ++PC  P D+R +
Sbjct: 683 DTLGVLKPNEIYIAPSSATLVNPRT--------MRPMSCVEGDVLIFRSPCKLPTDVRKM 734

Query: 832 EAVDHPELHHLYDCLVFPQKGDRPHTNEAS---GSDLDGDLYFVTWDENLIPPSKKSWPP 888
            AV H +L HL DC+V          + AS   G D DGD   V WDE+L+ P + +  P
Sbjct: 735 RAVYHSKLKHLQDCIVMSADSAMCTASPASLLAGGDYDGDTATVIWDEDLVKPFRNAPEP 794


>gi|327354916|gb|EGE83773.1| hypothetical protein BDDG_06718 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 1096

 Score = 66.6 bits (161), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 119/500 (23%), Positives = 190/500 (38%), Gaps = 99/500 (19%)

Query: 545 KNIAKCAARMGQCFSSTYATVEVPPTEV----DPELPDIKRNGYVFSDGIGKITPDLAME 600
           K+  K   R+    S T +TV +   E+    DP  P       V +DG   ++  L ME
Sbjct: 370 KSDLKLFQRLQLGLSRTLSTVVLRRDEIVYLKDPPPP-------VMNDGCALMSRSLGME 422

Query: 601 VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR---------MSLRESMNKFQ-- 649
           +A  L L+  P    +Q R +G KGV   W    D  R         + + ES  K    
Sbjct: 423 IACTLGLETVP--AIFQGRISGAKGV---WMVDRDDSRFRVGDRRFGLQITESQLKIHPA 477

Query: 650 ---------SHHTTLEICSWTR---------------FQPGFLNRQIITL---------- 675
                          E+  W+R                  G  N  I +L          
Sbjct: 478 PPYDTRPVDDTQLAFEVVQWSRPLSPAALNLQLLNILQHGGIRNDHIKSLIKQEMSSFYD 537

Query: 676 --LSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACA-----EQGNTAAIMLSA 728
             L TL VP+ +      +  S L +M   +D +++  T   +     +    A ++L A
Sbjct: 538 DFLETLRVPNGV------ACRSWLQKMKRITDESYKRQTKRTSNYFPPQYAEQAVLLLDA 591

Query: 729 GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSE 788
           GF P   P+L  +   +    L  L+   ++ V    +     D  GVL+  +  +  S 
Sbjct: 592 GFLPLKLPYLTELFKRLLHDYLNNLK-NLKVRVSQSTFAYCIADPFGVLKPDEVHLGFSS 650

Query: 789 PFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVF 848
            +      +HGS   E   + ++     +A+ P     DI+   +V    L H  D +VF
Sbjct: 651 AW------EHGSVGTELHGIDIL-----LARLPAHLSTDIQKRRSVYKNALRHFKDVIVF 699

Query: 849 PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS-WPPMEYNAAEAKTL----TRPV 903
           P  GD P  +  SG D DGD  +V WD  ++   K + + P    + E+  L    TR  
Sbjct: 700 PTTGDTPLASLLSGGDYDGDQCWVCWDPIIVREFKNTEFDPKTVPSEESLGLRDHSTRIS 759

Query: 904 DQRDIIEFFAK----HMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
           +     +F A     ++ +  LG     H     H +        + LA L +  VD  K
Sbjct: 760 EYVSTEKFLANAFKFNLKSSKLGPCTVEHETFCYH-QNNINSSLGVKLAWLLSYLVDSRK 818

Query: 960 TGKIVTMPA--HLKPKLYPD 977
           +G+ +T  A  +L+PK YP+
Sbjct: 819 SGRELTDDAWKNLRPK-YPN 837


>gi|443921571|gb|ELU41160.1| RdRP domain-containing protein [Rhizoctonia solani AG-1 IA]
          Length = 1096

 Score = 66.2 bits (160), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 89/420 (21%), Positives = 155/420 (36%), Gaps = 101/420 (24%)

Query: 545 KNIAKCAARMGQCFSSTYATVEVPPTEVD--PEL--PDIKRNGYVFSDGIGKITPDLAME 600
           + + K ++R    FS++   +   P+E+   PE   P    N  + +DG G I      +
Sbjct: 410 QTLNKWSSRFALGFSTSRPGLMFAPSEIYYLPETVAPGKSSNSAIMTDGAGFINTAAMNQ 469

Query: 601 VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAK---GDGIRMSLRESMNKFQSH------ 651
           +  ++K    P   + Q R+ G KG+    P      +  R+ +R S  K + H      
Sbjct: 470 LTAQMKWSTAP--VSVQARFGGSKGLFILHPNDRLLDNPPRIYIRPSQVKVKLHPDPRRW 527

Query: 652 ---HTTLEICSWTRFQPGF-LNRQIITLLSTLNVPDEMFWSMQDSML------------- 694
              H  L++ +      G  +  Q+I  LS   VP  +  SM  + +             
Sbjct: 528 CASHRVLDVLTRNTMAVGTQVTDQVIINLSHNGVPTTILDSMTRTYIESASLIPYVKEGR 587

Query: 695 -----------SKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPH------ 737
                      SK+ ++++       +  A   +       +L A F  Q +P+      
Sbjct: 588 FLQLWETIFTRSKVQELILKGLTPESMARAQGFKSIEKGQDLLDAKFTYQPDPYSGHPPS 647

Query: 738 -------------------LRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE 778
                              L   +  I+   L+G+  K    V     L G +D LG+L+
Sbjct: 648 FETQALGLLQSGFDLKFTPLFNRIESIQKMILFGMDGK----VLCQLVLNGLVDPLGILD 703

Query: 779 GGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILE------ 832
            G+ F     P   N  +           +  + G V++++NPC+ P D+R +       
Sbjct: 704 VGEVFCGFGRPVRDNSGTD----------ISTVLGPVLVSRNPCILPSDMRKVSTEGICG 753

Query: 833 -----------AVDHPEL--HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
                      AV+ PEL      D +VF  KG+R   +  +G D DGD   + W+E L+
Sbjct: 754 EIRAYSCSQVIAVECPELWAAGYTDVIVFSVKGERSLASMLAGGDYDGDTAILIWEEALV 813


>gi|302673317|ref|XP_003026345.1| expressed protein [Schizophyllum commune H4-8]
 gi|300100027|gb|EFI91442.1| expressed protein [Schizophyllum commune H4-8]
          Length = 984

 Score = 66.2 bits (160), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 11/150 (7%)

Query: 725 MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCL--DELGVLEGGQC 782
           +L AGF PQ   +LR  +  +         E  R+ VP  R L   +  D LGVL   + 
Sbjct: 508 LLQAGFKPQECEYLRIKMAKVLDMVCQSAVEDYRVPVPDSRGLNAFVVPDPLGVLNEDEI 567

Query: 783 FIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
           F   S  F+            E   +Q ++G V++ + P   P D+R ++AV+ P LH  
Sbjct: 568 FYMPSPSFMDP---------KEQVMVQAVEGEVIVGRYPIRLPSDLRKVKAVNRPALHQY 618

Query: 843 YDCLVFPQKGDRPHTNEASGSDLDGDLYFV 872
            + ++ P  G+R   +  SG D DGD+ F+
Sbjct: 619 TNVILVPTVGERSLVSLLSGGDCDGDILFM 648


>gi|402219719|gb|EJT99791.1| hypothetical protein DACRYDRAFT_100977 [Dacryopinax sp. DJM-731
           SS1]
          Length = 1204

 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 145/358 (40%), Gaps = 68/358 (18%)

Query: 586 FSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKG--VVACWPAKGDGIR----- 638
            +DG G +T  +A ++  +L L    PPCA Q R  G KG  V+    +  DG R     
Sbjct: 536 MTDGAGLMTYAVARDIQARLGL--RHPPCAVQYRTGGLKGMWVLRALTSDDDGHRFVWYR 593

Query: 639 ---MSLRESMNKFQSHHT-TLEICSWTRFQ-PGFLNRQIITLLSTLNVP-----DEMFWS 688
              + +R S ++ + +   T+E+ S ++   P  L  Q++ LL+   VP     D M  +
Sbjct: 594 PSQLKIRHSESQLEKNALRTIEVLSPSKLSAPARLTTQLVVLLAENGVPNKLLVDLMVKA 653

Query: 689 MQDSMLSKLNQMLVDSDVAF--EVLTAACAEQGNTAAIMLSAG----------------F 730
           ++ S+L   ++      +AF  E       ++ + A  +L  G                F
Sbjct: 654 LKSSLLPFFDKKSKPVHMAFALEEFCNLMVQRLSRAGSLLRGGSVRELAQEEEEEEEEDF 713

Query: 731 NPQTEPHLRGMLTCIRAAQLWG----LREKAR-------------IFVPAGRWLMGCL-- 771
                 +      C  +    G    LR K R             I     R + G +  
Sbjct: 714 EDHPGSYEELAYLCFLSGFTLGGSVYLRRKVRDILKKLIQATTADIRFRIERCVDGKIVP 773

Query: 772 DELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVI--AKNPCLHPGDIR 829
           D  G L+ G+ F+Q    +             +T+ ++++ G V++   +      G + 
Sbjct: 774 DPTGKLKPGEIFVQFRREY----------DVTDTESMKILTGDVLLLYQEKKFYAEGIVI 823

Query: 830 ILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWP 887
            ++AVD  ELH++YD +V   +G+R   +   G D DGD   V W+  ++ P K + P
Sbjct: 824 KMKAVDIDELHYMYDVIVMSTEGERSPASMLGGGDYDGDRATVIWEPQIVEPFKTADP 881


>gi|320170627|gb|EFW47526.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1247

 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 133/335 (39%), Gaps = 70/335 (20%)

Query: 579 IKRNGYVFSDG-IGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAG--------------- 622
           + RN    SDG       D A+E+   L  D +  P AYQIR+ G               
Sbjct: 385 VSRNVQYESDGSYQHELHDDALELPASLLEDNSFVPSAYQIRFGGFKGMLVVVTETVQEQ 444

Query: 623 -CKGVVACWPAKGDGIRMSLRESMNKFQS----HHTTLEI--CSWTRFQPGFLNRQIITL 675
            CKG+ A  P       M L  SM KFQ+     H  LE+  C++    P  LN +I+ +
Sbjct: 445 LCKGISAAAPMPS----MLLPRSMLKFQTPDFPEHRRLEVLGCAFPS-SPVTLNNEIVDM 499

Query: 676 LSTLN----VPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFN 731
           L  +     V       +  + L   N +L D   A   L     E+ +    ML+AG +
Sbjct: 500 LIGVATDSLVMRGFLKRLVTTFLDDCNFLLADQQKA---LAYYLQEKDDIGVRMLAAGHS 556

Query: 732 PQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFL 791
            +        LT    ++L  L     I +P+   L G  D   +L  G  ++   E  L
Sbjct: 557 LKFT-----YLTSFFRSKLIPLH----IPLPSTARLYGVADWSSLLPPGHVYVNSGETGL 607

Query: 792 GNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDH-----PELHHLYDCL 846
                              + G VV+ K PC    DI+  +A+D       +L HL + +
Sbjct: 608 -------------------VSGDVVMLKEPCFLRTDIQRFKAIDRDHVAFKQLCHLRNVV 648

Query: 847 VFPQKGDRPHTNEAS--GSDLDGDLYFVTWDENLI 879
           VF        ++ ++  GSDLDGD + V WD+ ++
Sbjct: 649 VFSTASSCTSSDASAMAGSDLDGDKFIVCWDQTIL 683


>gi|242207403|ref|XP_002469555.1| predicted protein [Postia placenta Mad-698-R]
 gi|220731359|gb|EED85204.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1264

 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 9/155 (5%)

Query: 725 MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI 784
           +L AGF P   P L   L  + A ++       +I VP         D  GVLE  +   
Sbjct: 793 LLQAGFQPLKLPLLYEKLRKVVADRIEDYIRNYKIAVPRSAEAFIIPDPYGVLEESEIHF 852

Query: 785 QVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD 844
           + ++               E     +I G V+I +NP   P D+R ++AV HP+L    +
Sbjct: 853 KSTQNLQDPL---------EESNPTIITGDVLIYRNPTRVPSDVRKVKAVSHPKLDKYVN 903

Query: 845 CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
            +V P KG R   N  +G D+DGD+    +D +L+
Sbjct: 904 VIVLPVKGSRSLANILAGGDVDGDVCTCIFDPDLV 938


>gi|242215346|ref|XP_002473489.1| predicted protein [Postia placenta Mad-698-R]
 gi|220727390|gb|EED81310.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1162

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 99/430 (23%), Positives = 166/430 (38%), Gaps = 89/430 (20%)

Query: 401 YKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTM 460
           ++ PK +      + +  TPT+     P    SN V+RKY    D F+RV F+DE L   
Sbjct: 335 HRNPKSV--FFACQHVTFTPTRMILEGPTRVQSNSVIRKYWPHRDHFIRVDFLDENLSQY 392

Query: 461 NANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCS 520
             +          R++   +F     +   V  +L GGF + G  F +   S  Q     
Sbjct: 393 RFD----------REVDGPAF-----LHDHVGKVLKGGFEVAGSPFDYSPDSEMQ----P 433

Query: 521 AWFFSEDGKTSVLDIKKWMGRFTDKNI-AKCAARMGQCFSSTYATVEVPP---TEVDPEL 576
           A   + D       I+  +G  ++  I AK AAR+GQ F+ST  ++ +      E+D E+
Sbjct: 434 AVRMTAD------RIRGALGDLSEIKIPAKYAARIGQAFTSTMCSMPISRDQWEEID-EI 486

Query: 577 PDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNP-------PPCAYQIRY--------- 620
            + + N    +DG+G+++  L M+    +  ++ P        P A Q R+         
Sbjct: 487 WEDRENPRSHTDGVGRLSQAL-MDRIWDIVCNLYPDYGVYGVKPSAVQFRFLGKSFNTIV 545

Query: 621 ---------AGCKGVVACWPAKGDGIRMSLRESMNKFQS------HHTTLEICSWTRFQP 665
                     G KGV+A  P +  G R+  R  M KF+           L+ C     Q 
Sbjct: 546 QKITHSSSPLGYKGVLAVDP-QLSGERICFRPEMRKFKPLICPYCREGNLDFCPHENDQN 604

Query: 666 ------------GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQ----------MLVD 703
                        +L R ++++L    V  + F  +Q     K  Q          +L  
Sbjct: 605 LHIADIFDSPKRAYLTRDLVSILEDRGVHLKAFMDLQQEAKMKTYQARDSVTQFMDILQT 664

Query: 704 SDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA 763
             + F+       E+ ++  +   A  N + +   R +        L  ++ +ARI VP 
Sbjct: 665 HHMGFQFRLPRLLERLDSLGV--DATRNQEADDFTRRVREHAIQHVLCDMKNRARIPVPR 722

Query: 764 GRWLMGCLDE 773
              L+G  DE
Sbjct: 723 SYLLVGVADE 732



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 126/305 (41%), Gaps = 60/305 (19%)

Query: 859  EASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVN 918
            E S +    DLY+V     L+P    +  P  YN  + K   RP D  D+ +F  ++M +
Sbjct: 849  ERSCASFRCDLYYVFQYYQLLPTIHIA--PASYN--DIKPPGRPFDWTDVCDFITEYMHS 904

Query: 919  ENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTM---PAHLKPKLY 975
            + L               +G+ D  C+ LAEL + AVD+PKTG+ V M   P  L  +  
Sbjct: 905  DAL---------------HGSHDPRCMRLAELCSDAVDYPKTGRPVDMRTAPGKLM-QYN 948

Query: 976  PDFMGKEAYQ------SYKSNKILGRLYRQSKDAYDE----------DISVS-------- 1011
            PD+   E         SY+S+++LG LYR  K    E          +IS+S        
Sbjct: 949  PDWYADEDTNANPLADSYQSDRVLGHLYRGIKLGVIEPSERTPGISPEISLSTQRLNDST 1008

Query: 1012 SEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVN-------REEE 1064
            S V +  V  H D    +P ++    D       Y  +L  +   + ++        EEE
Sbjct: 1009 SRVILPLVRGHLDG---IPAALTGYQDVLPTFKVYLAELRCIAFTHSLSLKAGSFITEEE 1065

Query: 1065 LVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFER 1124
            +V G I  M     R + +   R++   + L ++ R+    +  D    S DE  A   +
Sbjct: 1066 IVLGVIL-MTSSERRMKKDRTYRMRDDTTDLVQQIRRSLLSISGDTP--SVDELRAGLRK 1122

Query: 1125 KASAW 1129
              +AW
Sbjct: 1123 AWAAW 1127


>gi|449541618|gb|EMD32601.1| hypothetical protein CERSUDRAFT_126709 [Ceriporiopsis subvermispora
            B]
          Length = 1473

 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 106/459 (23%), Positives = 171/459 (37%), Gaps = 73/459 (15%)

Query: 725  MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI 784
            +L AGF+P    +L   L  I    +       R+ V          D  GVLE GQ   
Sbjct: 985  LLRAGFSPAQSQYLYDKLKMIVKLVVDRFVRDYRLPVAQSAEAFIVPDPYGVLEPGQIHF 1044

Query: 785  QVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD 844
            + ++  L +  +          +   + G V++ +NPC    D++ + AV HP+L    D
Sbjct: 1045 RATQ-LLKDSITD--------PEPDTLLGDVLVYRNPCRVASDVQKVTAVSHPKLTEYTD 1095

Query: 845  CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI-----PPSKKSWPPMEYNAAEAKTL 899
             +V P KGDR   +  +G D+DGD+    WD  ++     PP     PP E + +  +  
Sbjct: 1096 VIVLPTKGDRSLASLLAGGDVDGDVCVCIWDPEIVSQFQLPPG----PPREPDESFLEEY 1151

Query: 900  TRPVDQRDIIEFFAKHM-------VNENLGTICNAHVVHADHSEYGALDENCIL------ 946
              P    + +   +K +           L     A +      +Y    EN I       
Sbjct: 1152 FEPQGSVEQVSDLSKRLKELGAQDAQLELQKALLAGLNDLGVGQYSIFHENAIYAYGYDD 1211

Query: 947  -----LAELAATAVDFPKTGKIVT--------------MPAHLKPKLYPDFMGKEAYQSY 987
                 LA + AT +D  KTG  V                P  +KPK       ++ Y   
Sbjct: 1212 PVTRRLAFMFATVLDSRKTGLKVKGAVQKEDKNLYDREQPECMKPKA--KSKDQDPYSGG 1269

Query: 988  KSNKILGRLYRQS---KDAYDEDISVSSEV-----DINPVDIHYDTDLEVPESVDFIADA 1039
            K+ ++L R  + S   +  +DE   +S E       + P  +H   D    E +  + D 
Sbjct: 1270 KNQRVLKRQVKGSFILQQLFDEGKRLSDEKLAAFDKLAPNRMHEMRD----EDLLRVWDR 1325

Query: 1040 WNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEF 1099
              Q C++     G  ++    R ++ V  H        S    +     + S +A  K F
Sbjct: 1326 MLQDCNH--PFFGPGQRQFSERIQKFVKDHHLRWRDVCSTSPTKASPSKEKSSAARNKAF 1383

Query: 1100 RQVFEK-----MDSDCELLSEDEKNALFERKASAWYQVT 1133
            +QV  +      D DC L    E+  L   KAS  Y ++
Sbjct: 1384 QQVARQFGRSPFDDDCHLSWLGEQIELL--KASCAYTIS 1420


>gi|261202284|ref|XP_002628356.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
 gi|239590453|gb|EEQ73034.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
          Length = 1382

 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 120/500 (24%), Positives = 195/500 (39%), Gaps = 99/500 (19%)

Query: 545  KNIAKCAARMGQCFSSTYATVEVPPTEV----DPELPDIKRNGYVFSDGIGKITPDLAME 600
            K+  K   R+    S T +TV +   E+    DP  P       V +DG   ++  L ME
Sbjct: 656  KSDLKLFQRLQLGLSRTLSTVVLRRDEIVYLKDPPPP-------VMNDGCALMSRSLGME 708

Query: 601  VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGD----GI---RMSLRESMNKFQSH-- 651
            +A  L L+  P    +Q R +G KGV   W    D    G+   R  L+ + ++ + H  
Sbjct: 709  IACTLGLETVP--AIFQGRISGAKGV---WMVDRDDSRFGVGDRRFGLQITESQLKIHPA 763

Query: 652  -----------HTTLEICSWTR-FQP--------------GFLNRQIITL---------- 675
                           E+  W+R   P              G  N  I +L          
Sbjct: 764  PPYDTRPVDDTQLAFEVVQWSRPLSPAALNLQLLNILQHGGIRNDHIKSLIKQEMSSFYD 823

Query: 676  --LSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACA-----EQGNTAAIMLSA 728
              L TL VP+ +      +  S L +M   +D +++  T   +     +    A ++L A
Sbjct: 824  DFLETLRVPNGV------ACRSWLQKMKRITDESYKRQTKRTSNYFPPQYAEQAVLLLDA 877

Query: 729  GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSE 788
            GF P   P+L  +   +    L  L+   ++ V    +     D  GVL+  +  +  S 
Sbjct: 878  GFLPLKLPYLTELFKRLLHDYLNNLK-NLKVRVSQSTFAYCIADPFGVLKPDEVHLGFSS 936

Query: 789  PFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVF 848
             +      +HGS   E   + ++     +A+ P     DI+   +V    L H  D +VF
Sbjct: 937  AW------EHGSVGTELHGIDIL-----LARLPAHLSTDIQKRRSVYKNALRHFKDVIVF 985

Query: 849  PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS-WPPMEYNAAEAKTL----TRPV 903
            P  GD P  +  SG D DGD  +V WD  ++   K + + P    + E+  L    TR  
Sbjct: 986  PTTGDTPLASLLSGGDYDGDQCWVCWDPIIVREFKNTEFDPKTVPSEESLGLRDHSTRIS 1045

Query: 904  DQRDIIEFFAK----HMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
            +     +F A     ++ +  LG     H     H +        + LA L +  VD  K
Sbjct: 1046 EYVSTEKFLANAFKFNLKSSKLGPCTVEHETFCYH-QNNINSSLGVKLAWLLSYLVDSRK 1104

Query: 960  TGKIVTMPA--HLKPKLYPD 977
            +G+ +T  A  +L+PK YP+
Sbjct: 1105 SGRELTDDAWKNLRPK-YPN 1123


>gi|393224586|gb|EJD32918.1| hypothetical protein AURDEDRAFT_177990 [Auricularia delicata
           TFB-10046 SS5]
          Length = 655

 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 107/260 (41%), Gaps = 37/260 (14%)

Query: 723 AIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQC 782
           A +L A F PQ    L   L  +  + L    E   + +P         D  G LE G+ 
Sbjct: 187 ADLLKASFKPQDTAFLHRTLKEVIRSNLQRKVEGYHVDLPCS-----ASDPTGTLEPGEV 241

Query: 783 FIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
           + + S P L           ++  +  V++G  V+ ++PC+ P D++ + AV+  EL   
Sbjct: 242 YFRPSVPLLD----------SQGYQFDVLEGDCVMGRHPCMLPSDLQKVRAVNRAELGQY 291

Query: 843 YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS--------WPPME---- 890
            D +V   +G R   +  +G D DGD   +TW   ++ P + S         PP E    
Sbjct: 292 RDVVVCATRGRRSLASLLAGGDYDGDKVVITWYAPIVTPFEMSEEASERFATPPAELASC 351

Query: 891 YNAAEAKTL-----TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCI 945
           +    A TL     T P+  +              +G + N H+V A  + Y   +   +
Sbjct: 352 FEQESAPTLAELVSTGPLSDKGPAVILRGLRDKGRVGLVANFHLVSAYMTGYDGPE--TV 409

Query: 946 LLAELA---ATAVDFPKTGK 962
           LLA +    ++ +D  K+G+
Sbjct: 410 LLAHMHVSFSSLLDSAKSGR 429


>gi|239612171|gb|EEQ89158.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ER-3]
          Length = 1382

 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 120/500 (24%), Positives = 191/500 (38%), Gaps = 99/500 (19%)

Query: 545  KNIAKCAARMGQCFSSTYATVEVPPTEV----DPELPDIKRNGYVFSDGIGKITPDLAME 600
            K+  K   R+    S T +TV +   E+    DP  P       V +DG   ++  L ME
Sbjct: 656  KSDLKLFQRLQLGLSRTLSTVVLRRDEIVYLKDPPPP-------VMNDGCALMSRSLGME 708

Query: 601  VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR---------MSLRESMNKFQ-- 649
            +A  L L+  P    +Q R +G KGV   W    D  R         + + ES  K    
Sbjct: 709  IACTLGLETVP--AIFQGRISGAKGV---WMVDRDDSRFRVGDRRFGLQITESQLKIHPA 763

Query: 650  ---------SHHTTLEICSWTR-FQP--------------GFLNRQIITL---------- 675
                           E+  W+R   P              G  N  I +L          
Sbjct: 764  PPYDTRPVDDTQLAFEVVQWSRPLSPAALNLQLLNILQHGGIRNDHIKSLIKQEMSSFYD 823

Query: 676  --LSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACA-----EQGNTAAIMLSA 728
              L TL VP+ +      +  S L +M   +D +++  T   +     +    A ++L A
Sbjct: 824  DFLETLRVPNGV------ACRSWLQKMKRITDESYKRQTKRTSNYFPPQYAEQAVLLLDA 877

Query: 729  GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSE 788
            GF P   P+L  +   +    L  L+   ++ V    +     D  GVL+  +  +  S 
Sbjct: 878  GFLPLKLPYLTELFKRLLHDYLNNLK-NLKVRVSQSTFAYCIADPFGVLKPDEVHLGFSS 936

Query: 789  PFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVF 848
             +      +HGS   E   + ++     +A+ P     DI+   +V    L H  D +VF
Sbjct: 937  AW------EHGSVGTELHGIDIL-----LARLPAHLSTDIQKRRSVYKNALRHFKDVIVF 985

Query: 849  PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS-WPPMEYNAAEAKTL----TRPV 903
            P  GD P  +  SG D DGD  +V WD  ++   K + + P    + E+  L    TR  
Sbjct: 986  PTTGDTPLASLLSGGDYDGDQCWVCWDPIIVREFKNTEFDPKTVPSEESLGLRDHSTRIS 1045

Query: 904  DQRDIIEFFAK----HMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
            +     +F A     ++ +  LG     H     H +        + LA L +  VD  K
Sbjct: 1046 EYVSTEKFLANAFKFNLKSSKLGPCTVEHETFCYH-QNNINSSLGVKLAWLLSYLVDSRK 1104

Query: 960  TGKIVTMPA--HLKPKLYPD 977
            +G+ +T  A  +L+PK YP+
Sbjct: 1105 SGRELTDDAWKNLRPK-YPN 1123


>gi|389740950|gb|EIM82140.1| hypothetical protein STEHIDRAFT_124929 [Stereum hirsutum FP-91666
           SS1]
          Length = 982

 Score = 63.5 bits (153), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 9/159 (5%)

Query: 721 TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
           T  ++L +GF PQ  P L   L  +    +     + ++ VP         D  GVL  G
Sbjct: 484 TVCVLLDSGFTPQNNPVLASKLEKVIKGAVNKRLARCKVEVPMACTAFIIPDPFGVLNEG 543

Query: 781 QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH 840
           +  I+ S   L N   + G   A+      I G V++ +NPC  P DI+ + AV   EL 
Sbjct: 544 EIHIKSS---LTNLQRQDGLSTAQ------ILGPVLVTRNPCKLPSDIQKVTAVFCAELR 594

Query: 841 HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
              D +VF  KG R   +  +  D DGD     W   ++
Sbjct: 595 DYDDVIVFSTKGRRSLASLLATGDYDGDKAVAIWQPEIV 633


>gi|403411358|emb|CCL98058.1| predicted protein [Fibroporia radiculosa]
          Length = 1270

 Score = 63.5 bits (153), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 34/258 (13%)

Query: 725  MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQC-F 783
            +L AGF+P   P L   L  I   ++    ++ RI +          D  GVLE GQ  F
Sbjct: 783  LLQAGFHPLELPILYEKLRQIVEKRIEEFIKEYRIVLENSAEAFIMPDPYGVLEEGQIQF 842

Query: 784  I---QVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH 840
            I    + +P              E      I G V++ +NP   P D+R + AV HP+L 
Sbjct: 843  IATQNLKDPL-------------EDPMPMAITGEVLLYRNPARVPSDVRKVIAVVHPKLV 889

Query: 841  HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSW---PP---MEYNAA 894
               + +V P KG R   N  +G D+DGD+    ++ +L+ P +      PP    E N  
Sbjct: 890  EYVNVIVLPTKGKRSLANILAGGDVDGDVAVCIYEPSLVKPFRNGPINDPPPRFKENNFE 949

Query: 895  EAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDEN----------- 943
               ++ R  D  D ++          L  +  + +  A    Y    EN           
Sbjct: 950  TEGSIERVCDFSDRLKSLPPAAAQSELQKVLLSGLSKAAVGTYSIFHENTAYTLGYDHLE 1009

Query: 944  CILLAELAATAVDFPKTG 961
             + LA +  T +D  KTG
Sbjct: 1010 TLRLAFMFTTVLDSRKTG 1027


>gi|392597983|gb|EIW87305.1| hypothetical protein CONPUDRAFT_87147 [Coniophora puteana
           RWD-64-598 SS2]
          Length = 1075

 Score = 63.2 bits (152), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 13/110 (11%)

Query: 772 DELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRIL 831
           D  GVL+ G+ + + S+ F      + G+RF       ++KG V++ +NP   P D++ +
Sbjct: 664 DPYGVLKEGEIYFRSSDGFKD---PETGARF------DILKGDVLVLRNPTRLPSDVQKV 714

Query: 832 EAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
            AV +PEL   YD ++FP  G R   +   G    GD   V WD+ L+ P
Sbjct: 715 RAVTYPELEKYYDVIIFPTCGARSLASYLGG----GDTVLVVWDKQLVQP 760


>gi|409051063|gb|EKM60539.1| hypothetical protein PHACADRAFT_82474, partial [Phanerochaete
           carnosa HHB-10118-sp]
          Length = 639

 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 101/256 (39%), Gaps = 35/256 (13%)

Query: 756 KARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFV 815
           K R+ VP         D  GVLE G+ +++ S P L    S  G   A+     VI G V
Sbjct: 393 KYRVNVPMSCSAWAVPDPTGVLEAGEIYVESSAPLL----SADGKTEAD-----VIVGDV 443

Query: 816 VIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHT--------NEASGSDLDG 867
           +I ++PC  P D++ ++AV+  EL    D +V   KG R  T        +   G D DG
Sbjct: 444 LITRHPCKVPSDVQKVKAVNRRELRGYKDLVVVSTKGHRVQTQLLDRHLLSMLGGGDYDG 503

Query: 868 DLYFVTWDENLI-----------PPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHM 916
           D   V W+  L+            P K     +E N    ++  R V      +     +
Sbjct: 504 DRVQVFWNPELVDGFQPADPAFATPPKSVELGLEKNTESVESFLRRVPDTAPRKQRIFEL 563

Query: 917 VNENLGTICNAHVVHADHS-------EYGALDENCILLAELAATAVDFPKTGKIVTMPAH 969
               LG + N  +V    +       ++G      I LA L    +D  KTG  V     
Sbjct: 564 QRVLLGPLQNTSLVGKYSTFWENAVYQHGYGSTEAIRLAYLFCAVLDGSKTGVTVKAEQW 623

Query: 970 LKPKLYPDFMGKEAYQ 985
            K K + +  GK A++
Sbjct: 624 GKDKKHYEAQGKPAWK 639


>gi|392562423|gb|EIW55603.1| hypothetical protein TRAVEDRAFT_128797, partial [Trametes
           versicolor FP-101664 SS1]
          Length = 894

 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 17/167 (10%)

Query: 721 TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
           T   ++ AGF PQT P LR  L  +    +   + K R  VP         D  GVL   
Sbjct: 414 TCLTLIDAGFTPQTCPVLRAKLMEVAKKVVTTFKTKYRFAVPMSCSAFIVPDPYGVLGPN 473

Query: 781 QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH 840
           +  ++ S     +          E ++  ++ G V++ ++PC  P D++ ++AV H  L 
Sbjct: 474 EIHVKCSRRDFVD---------QEGRQTDIVLGDVLVTRHPCKVPSDVQKVKAVFHERLR 524

Query: 841 HLYDCLVFPQKG--------DRPHTNEASGSDLDGDLYFVTWDENLI 879
           H  + +V   K         DR   +   G D DGD   V WD  L+
Sbjct: 525 HYCNVIVVSTKSHTYQGVPLDRHLASLTGGGDYDGDTMEVFWDPALV 571


>gi|452985629|gb|EME85385.1| hypothetical protein MYCFIDRAFT_83458, partial [Pseudocercospora
            fijiensis CIRAD86]
          Length = 1527

 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 15/174 (8%)

Query: 725  MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCL--DELGVLEGGQC 782
            ML +G  P  E  L   +  +    L   ++  +I +     L+G    D L  L  G+ 
Sbjct: 1010 MLESGLVPSQEAFLASEVRTMVKTVLDTKKKNFKIPLSRSTTLLGVALADPLNCLAPGEI 1069

Query: 783  FIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
             +  +  F   C    G  ++   +++ +     IA+NP + P D++ ++AV  PEL HL
Sbjct: 1070 HVNFARTF---CDKITGMPWSILHEMECL-----IARNPAMAPWDMQKVKAVFKPELAHL 1121

Query: 843  YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKK---SW--PPMEY 891
             + ++   KG RP      G D DGD +++ W+  L+ P +     W  PP+++
Sbjct: 1122 PNVVILSAKGKRPLAELLQGGDYDGDTFWLCWEPRLVRPFRNHPAPWDPPPIDF 1175


>gi|403160269|ref|XP_003320812.2| hypothetical protein PGTG_02834 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|375169485|gb|EFP76393.2| hypothetical protein PGTG_02834 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1164

 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 131/333 (39%), Gaps = 68/333 (20%)

Query: 613 PCAYQIRYAGCKGV-VACWPAKGDGIRMSLRESMNKFQ-----SHHTTLEICSW-TRFQP 665
           P AYQ R    KG+         DG  + +R+S  K           T  IC++ TR + 
Sbjct: 479 PAAYQARILKSKGLWYLSRDLDKDGFWIEIRDSQWKGDVRCKPGDAITFNICNFSTRAKA 538

Query: 666 GFLNRQIITLLSTLNVP--------DEMFWSMQDSMLS----KLNQML------------ 701
           G +NRQ I ++ + NVP         E F ++ D + S     L+Q L            
Sbjct: 539 GHVNRQSIPVIVSRNVPVSVFTDRQREAFKAVLDELTSTNPVHLSQALEVHGHLLNLKAK 598

Query: 702 -------------VDS-DVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRA 747
                        VD   V +E  +            +L +GF  +    +  +   +  
Sbjct: 599 RLTTTTNSFVRKEVDEVGVTWEKYSNRPCNAMEEIVELLKSGFTARNNRVVDRL--NVAG 656

Query: 748 AQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKK 807
            Q+       ++ + +   +    D  G L+ G+ F+++S             RF + K 
Sbjct: 657 KQICEKMMNFKVEISSSATIYAIPDPTGTLKEGEVFLRLS-------------RFRDPKT 703

Query: 808 ---LQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSD 864
              + ++KG  V+A++PC+ P D R ++AV +  L    D LV   +G +   +  SG D
Sbjct: 704 SVPVNILKGDCVVARSPCVLPTDARKVKAVTNQRLACYEDVLVCSIQGKKSLLDYLSGGD 763

Query: 865 LDGDLYFVTWDE----NLIPPSKKSWPPME-YN 892
            DGD+  V WD+    N +    K   P E YN
Sbjct: 764 YDGDVVIVIWDDAFTKNFVNADDKHLLPTEKYN 796


>gi|313243221|emb|CBY39877.1| unnamed protein product [Oikopleura dioica]
          Length = 265

 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 30/186 (16%)

Query: 535 IKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKI 593
           I K+ G F   K + K AAR+G   S+T     +   +   E  DI  +G  F+DG G++
Sbjct: 26  IWKYFGDFEKIKTVPKYAARLGLLISATRHAEFIEDGKWQLE-KDIVHHGCNFTDGCGRM 84

Query: 594 TPDLAM------EVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKG-DGIRMSLRESMN 646
           +  LA         A + K      P   QIR+ GCKG++   P+    G  + LRES  
Sbjct: 85  STQLAQRFTLNKHCANRYKHQSFEVPSIVQIRFMGCKGILVHDPSLDFSGKDVILRESQK 144

Query: 647 KFQSHHTTLE------------------ICSWTRFQP---GFLNRQIITLLSTLNVPDEM 685
           KF+ +  T++                  IC     +P   G LN+Q + +LS L +P+  
Sbjct: 145 KFEWNFNTIKGRLKYTEKKQGRTGRLLGICRGGESKPFVFGRLNKQFVLVLSALGIPNTT 204

Query: 686 FWSMQD 691
              +Q+
Sbjct: 205 LLEIQN 210


>gi|403414080|emb|CCM00780.1| predicted protein [Fibroporia radiculosa]
          Length = 1620

 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 19/196 (9%)

Query: 694  LSKLNQMLVDSDVAF--EVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLW 751
            L+ L++ + D   A+  + ++   +    T  ++L AGFNP+T P L   L  +    + 
Sbjct: 1077 LNHLDEAIEDHSTAWWDDPISGCPSSLEETVMVLLDAGFNPKTCPVLAAKLKEVVKRVIT 1136

Query: 752  GLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVI 811
             +  K +I V      +   D   VL  G+  ++ S+    N   + G      K+  +I
Sbjct: 1137 TMVRKYQIEVSQSLSAVIVPDPCNVLRPGEIHVKSSQ---RNLVDQDG------KRTDII 1187

Query: 812  KGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKG--------DRPHTNEASGS 863
             G V++ ++PC  P D++ ++AV H +L +  D +V   K         +R   +   G 
Sbjct: 1188 LGDVLVTRHPCKVPTDVQKVQAVYHEKLRNYVDVIVVSTKDHIYGNKLLNRHLASCTGGG 1247

Query: 864  DLDGDLYFVTWDENLI 879
            D DGD+  V W   L+
Sbjct: 1248 DYDGDMMEVFWKRELV 1263


>gi|299747708|ref|XP_001837206.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
 gi|298407644|gb|EAU84823.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
          Length = 1221

 Score = 60.8 bits (146), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 19/168 (11%)

Query: 725 MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCL-----DELGVLEG 779
            L +GF PQ+    R  L  I    +  + +  R+       LM C      D  GVLE 
Sbjct: 676 FLDSGFMPQSCHVQREKLKHIIRRFIKNISKTYRMTA-----LMSCSAWIIPDTRGVLEE 730

Query: 780 GQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
           G+ + + S     N    +G+   E      + G V++ +NP   P D++   AV  PEL
Sbjct: 731 GEIYFKSSS---RNLLRPNGTLTDE------LIGDVLVTRNPSKLPTDVQKWRAVHRPEL 781

Query: 840 HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWP 887
             L D +V   KG R   +  +G D DGD   V WD  ++ P K + P
Sbjct: 782 RDLVDVVVLSTKGARRAADWLAGGDYDGDKVTVIWDPKIVDPFKTADP 829


>gi|426200996|gb|EKV50919.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
          Length = 1000

 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 13/159 (8%)

Query: 725 MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCL--DELGVLEGGQC 782
           +L AGF+P+    L+  L+ I   ++    +K  I  P    L G +  D LG+L+ G+ 
Sbjct: 552 LLQAGFHPRHSAVLKDKLSFIIEQEIEHCVKKYAI--PLAESLSGFVAPDPLGILDEGEI 609

Query: 783 FIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
           + + SE  L         R   T    ++ G V++ + P     D++ ++AV+ PEL+  
Sbjct: 610 YFRSSESLLD-------PRTQLT--YDIVTGDVILGRYPVRLASDLQKVKAVNKPELYRW 660

Query: 843 YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
            D ++   KG R   +  SG D+DGD  F+  + +++ P
Sbjct: 661 PDVIIVSTKGKRSLASLLSGGDMDGDTLFMLREPDIVEP 699


>gi|402224034|gb|EJU04097.1| hypothetical protein DACRYDRAFT_14289 [Dacryopinax sp. DJM-731 SS1]
          Length = 1239

 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 721 TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDEL-GVLEG 779
           +A   L +GF  +T  +LR  +  I    L     K ++ VP           +   L+ 
Sbjct: 824 SALFALDSGFTLETCSYLRRKVGKILEQILTSHISKFKLVVPPSAEGFAIPSPIPSALKP 883

Query: 780 GQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
           G+ F+++S   +    S+ G          V+ G V+I ++PC  P DI++++AVD PEL
Sbjct: 884 GEIFLRMSRERVD---SRTG------MATDVVVGDVLIVRHPCKLPSDIQLVKAVDCPEL 934

Query: 840 HHLYDCLVFPQKGDRPHT--NEASGSDLDGDLYFVTWDENLI 879
            H  D ++      +P +  ++ +G D DGD   + WD++LI
Sbjct: 935 RHWKDVIITSVDRSQPRSLLSKLAGGDYDGDTVVIYWDKDLI 976


>gi|392575871|gb|EIW69003.1| hypothetical protein TREMEDRAFT_73994 [Tremella mesenterica DSM 1558]
          Length = 1405

 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 807  KLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGD--RPHTNEASGSD 864
            ++  ++G V+  ++PC  P DIR   AV  PEL HL DC+V   + D  R   +   G D
Sbjct: 957  RISYLEGPVLALRSPCKLPSDIRKFTAVYRPELVHLTDCIVMSARDDCRRSPASFLGGGD 1016

Query: 865  LDGDLYFVTWDENLIPPSKKS 885
             DGD   + WD  ++ P K +
Sbjct: 1017 YDGDTVQIIWDPEIVGPFKNA 1037


>gi|409047033|gb|EKM56512.1| hypothetical protein PHACADRAFT_118286 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 965

 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 9/154 (5%)

Query: 726 LSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQ 785
           + AGF+P T+ HL   L  +    +    +   I VP         D  G+LE  +   +
Sbjct: 500 IQAGFSPLTDIHLYNELKTLLKIVMESYIKDYHIIVPESAEAFIVPDPYGLLEEDEIHFK 559

Query: 786 VSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDC 845
            S+     C         E    + + G V+I +NP   P D++ + AV  PE     D 
Sbjct: 560 SSQDLKDAC---------EHLNPKSVVGDVLIYRNPARVPSDVQKVRAVCRPEYADYLDV 610

Query: 846 LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
           ++ P KG R   +  +G D DGD+    +D  ++
Sbjct: 611 IILPTKGRRSLASLLAGGDYDGDVATCIFDPQIV 644


>gi|389740949|gb|EIM82139.1| hypothetical protein STEHIDRAFT_161484 [Stereum hirsutum FP-91666
           SS1]
          Length = 1302

 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 152/409 (37%), Gaps = 77/409 (18%)

Query: 543 TDKNIAKCAAR--MGQCFSSTYATVEVPPTEVDPELPDIKRNGYV---------FSDGIG 591
           +++ IAK AAR  +G   S     +E     ++PE+     N  +          +DG G
Sbjct: 452 SNQTIAKWAARIPLGLSNSVPGPKLECNQIRLEPEIISSSWNPSMGPKPPSEMEMTDGCG 511

Query: 592 KITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIR----MSLRESMNK 647
            I      E+      D  P   A Q+R AG KG++   P+          + +R S  K
Sbjct: 512 FINQTALQELHSNKFWDSIP--VAIQVRVAGNKGLLTRHPSNDANYLKYPCIWVRPSQTK 569

Query: 648 FQ------SHHT---TLEICSWTRFQPGF-LNRQIITLLSTLNVPDEMFWSMQDSMLSKL 697
                   +H     T+++   +  + G   +++++   +   VP E+        L +L
Sbjct: 570 IHYSDQDLAHEPAKRTIDVLRASHMRSGIQASKEVLVNFAENGVPHEILSRRMRESLEEL 629

Query: 698 NQMLVDSDVAFEVLTAACAEQGNTAAIM-------------------------------- 725
            + L+  D   ++      E G   A M                                
Sbjct: 630 MEQLLQWDDMLQLYRLVFKEGGILGARMAREAAGEARVRGYRAYDNEDDDKEEDERISEE 689

Query: 726 -----LSAGFNPQTEPHLRGMLTCI--RAAQLWGLREKARIFVPAGRWLMGCLDELGVLE 778
                L +GF PQ    L   L  +  +A +    R K  I +    W++   D  G L+
Sbjct: 690 TVCYFLDSGFTPQNNAILAEKLKEVITKAMKKRIARCKVEIPMSCSAWIIP--DPTGTLK 747

Query: 779 GGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE 838
            G+  I+ S P L         +  + +  + + G V+++++PC  P D++ + AV + +
Sbjct: 748 EGEIHIRSSAPNL---------KGQDGQLTEQVLGPVLVSRHPCKLPTDVQKVTAVYYSQ 798

Query: 839 LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWP 887
           L    D +VF  KG R   +     D DGD     WD  +  P + + P
Sbjct: 799 LEKYVDVIVFSTKGCRSLASMLGTGDYDGDKVEAVWDPEIAGPFRNADP 847


>gi|147767777|emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
          Length = 1202

 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 140/350 (40%), Gaps = 80/350 (22%)

Query: 661  TRFQP--GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ 718
            T  QP   +L++ +I LLS   VP+E F ++       L   L D+  + + ++    E 
Sbjct: 782  TSNQPRRSYLSKYLIALLSYGGVPNEYFMNL-------LKDALEDAP-SVQSISLRFDEM 833

Query: 719  GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE 778
             ++    +     P  EP L+  L+ +   +  GLR   ++ V    +LMG  D  G L+
Sbjct: 834  DDSIVTRMILSGIPIDEPFLQHRLSFMVNEERKGLR-VGKLPVNDCFYLMGTADPTGKLK 892

Query: 779  GGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE 838
              +  I +           HG           ++G V++ K+P LH GDI +L A     
Sbjct: 893  SDEVCIILD----------HGQ----------VQGRVLVYKHPGLHFGDIHVLNATYVEA 932

Query: 839  LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKT 898
            L          ++   P   + S   +               PSK+   P +++  E   
Sbjct: 933  L----------EEASEPWMRKXSTRHV---------------PSKR---PTDFSPDEL-- 962

Query: 899  LTRPVDQRDIIEFF--AKHMVNENLGTICNAHVVHADH---------SEYGALDENCILL 947
                  + ++ + F   +   +  +G   +  +V  D           E   L    + L
Sbjct: 963  ------EHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLEL 1016

Query: 948  AELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLY 997
             ++   A+D PK+G  V +   LK + +P FMG+E+  SY S  ILG++Y
Sbjct: 1017 TDIYYDALDAPKSGMKVNVSKELKAEKFPHFMGRES--SYHSTSILGQIY 1064


>gi|328861348|gb|EGG10451.1| hypothetical protein MELLADRAFT_103030 [Melampsora larici-populina
           98AG31]
          Length = 1075

 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 810 VIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLY-DCLVFPQKGDRPHTNEASGSDLDGD 868
           ++ G  +I ++PC  P D+R ++ V +  L  +Y D +V   +GDR   +  SG D DGD
Sbjct: 595 ILAGPALIWRSPCAAPIDVRKIQLVANEHLQRVYFDVIVCSTRGDRAMLSMLSGGDYDGD 654

Query: 869 LYFVTWDENLIPPSKKSWP 887
              VTWD+ L+ P + + P
Sbjct: 655 QVSVTWDKRLVDPFQNADP 673


>gi|302413491|ref|XP_003004578.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
 gi|261357154|gb|EEY19582.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
          Length = 99

 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 839 LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKT 898
           L  L +C+VF Q GD+   ++ SG DL+GD Y + WD    P  K+ +   +Y+      
Sbjct: 10  LRDLRNCIVFSQHGDQDLPSQLSGGDLNGDQYNIIWDRQACP--KRFFASADYSRITPTE 67

Query: 899 LTRPVDQRDIIEFFAKHMVNENLGTICNAHVV 930
           L R V +     FF   M ++ LG I   H++
Sbjct: 68  LNRQVTRDGKAGFFVDFMKSDMLGMITTEHLI 99


>gi|242048812|ref|XP_002462152.1| hypothetical protein SORBIDRAFT_02g020722 [Sorghum bicolor]
 gi|241925529|gb|EER98673.1| hypothetical protein SORBIDRAFT_02g020722 [Sorghum bicolor]
          Length = 88

 Score = 55.8 bits (133), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 6/91 (6%)

Query: 871 FVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIE-FFAKHMVNENLGTICNAHV 929
            +TW   +IP  +K   PM+Y A     +   V   +I + F + +M N+ LG I   H+
Sbjct: 3   LITW---MIP--EKVDAPMDYTATRPCIMDHAVTLEEIQKHFVSYYMTNDTLGVISIVHL 57

Query: 930 VHADHSEYGALDENCILLAELAATAVDFPKT 960
           +HADH+   A    C+ LA L + AVDF KT
Sbjct: 58  IHADHNPLKAHSPECLQLAALHSMAVDFAKT 88


>gi|315048949|ref|XP_003173849.1| RNA directed RNA polymerase [Arthroderma gypseum CBS 118893]
 gi|311341816|gb|EFR01019.1| RNA directed RNA polymerase [Arthroderma gypseum CBS 118893]
          Length = 1245

 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 13/110 (11%)

Query: 772 DELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRIL 831
           D  GVLE G+ ++   + +              T  L  I   V++++ P   P D++  
Sbjct: 795 DHYGVLEEGEIYLDFGDTWEDG-----------TTDLDGID--VLVSRAPAHFPSDVQKC 841

Query: 832 EAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
            AV  PEL HL +  +F  KG  P  +  SG D DGD  +V W+  ++ P
Sbjct: 842 RAVYRPELRHLKNVAIFSTKGKVPLASLLSGGDYDGDQVWVCWEPEIVKP 891


>gi|324526384|gb|ADY48663.1| RNA-dependent RNA polymerase 2 [Ascaris suum]
          Length = 156

 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 29/155 (18%)

Query: 552 ARMGQCFS-STYATVEVPPTEVDPELP-----DIKRNGYVFSDGIGKITPDLAMEVAQKL 605
           ARMGQCF+ +   ++++     +         D     Y FSDG G+++P+ A  +A  L
Sbjct: 2   ARMGQCFTQAKECSIKLLHRRYNKTFDIIGGMDSSGEPYTFSDGCGRLSPEFAQRIADDL 61

Query: 606 KLDVNPPPCAYQIRYAGCKGVV---------ACWPA------------KGDGIRMSLRES 644
            L    P C +QIR+ G KGVV         A W              K + + M  R S
Sbjct: 62  HLGKCVPSC-FQIRFRGIKGVVSVDPWLTERASWATEHNIADNMENYNKKNKLYMLFRPS 120

Query: 645 MNKFQSHHT-TLEICSWTRFQPGFLNRQIITLLST 678
            +KF +  +  +EI  ++   P  LNR  I +L T
Sbjct: 121 QDKFHAPLSHKIEIVKYSSPTPVCLNRPYIAILLT 155


>gi|242208189|ref|XP_002469946.1| predicted protein [Postia placenta Mad-698-R]
 gi|220731008|gb|EED84857.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1427

 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 111/284 (39%), Gaps = 53/284 (18%)

Query: 721 TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
           T  ++L +GF P T P L   L  +    +     + R+ VP         D LGVLE G
Sbjct: 637 TVLVLLDSGFKPDTCPVLAAKLKEVVKRAINSYVRRYRVDVPQSCTAYIVPDPLGVLEPG 696

Query: 781 QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELH 840
           Q  I+ S     N   + G      +   ++ G V++ ++PC  P D++ + AV + +L 
Sbjct: 697 QVHIKSSRR---NLVDQDG------RPTDIVLGEVLVTRHPCKVPTDVQKVTAVFNQKLS 747

Query: 841 HLYDCLVFPQKG--------DRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYN 892
              D +V   K         +R   +   G D DGD     W+ +L+   K         
Sbjct: 748 SYVDVIVVSIKDHVSNKKLMNRHLASCTGGGDYDGDTMEAFWNSDLVEGFKN-------- 799

Query: 893 AAEAKTLTRP--------VDQRDIIEFFAKHMVNEN------------LGTICNAHVVHA 932
            AE K L  P         +   + +F +++ ++ +            LG++ ++ +V  
Sbjct: 800 -AETKFLNEPKNVQKCLVKNTETVAQFLSRNPLSTDKDIMQPEIQKYLLGSLRDSSMVGT 858

Query: 933 DHS-------EYGALDENCILLAELAATAVDFPKTGKIVTMPAH 969
             +        YG      + LA +    +D  KTG +V   A+
Sbjct: 859 YSTWWENAIYRYGYQHNRTVFLAYMFCAILDGSKTGVMVAESAY 902


>gi|353241158|emb|CCA72990.1| related to qde-1 RNA-dependent RNA polymerase (RdRP) [Piriformospora
            indica DSM 11827]
          Length = 1766

 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 81/186 (43%), Gaps = 35/186 (18%)

Query: 545  KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRN-GYVFSDGIGKITPDLAMEVAQ 603
            ++++K A R+   FS T   V + P  +   + DI+ + G VF+DG G +TP LA  +A+
Sbjct: 949  QDMSKLATRLELGFSDTLPGVLLEPAHIH-VVNDIENDDGTVFTDGAGLMTPSLARTLAR 1007

Query: 604  KLKL------DVNPPPCAYQIRYAGCKGVVACWP-----AKGDGI-RMSLRESMNKFQSH 651
            K         D    P AYQIR    KGVV   P        DG  R+ L +SM K    
Sbjct: 1008 KYPTKDQRDRDALDTPVAYQIRVQTAKGVVLIDPDMLVDRNFDGPHRLLLSKSMCKAARG 1067

Query: 652  HTTLEI-------------CSWTRFQPG--------FLNRQIITLLSTLNVPDEMFWSMQ 690
            +  L               C     +P          L+ Q IT+LS+  VPD++F  +Q
Sbjct: 1068 NKPLRPGPVNGMHILDAADCIVCIVKPAPVSASTGVRLSSQFITVLSSCGVPDDVFLQIQ 1127

Query: 691  DSMLSK 696
               L K
Sbjct: 1128 HDALEK 1133



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 11/135 (8%)

Query: 753  LREKARIFVPAGRWLMGCL--DELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQV 810
            +R  A+  +P  R   G L  D  G L+ G+ F     P      S+ G        +Q 
Sbjct: 1282 MRVVAKFHLPVERSACGFLQPDFTGSLKEGEVFFS---PKSAMVDSETG------LAVQF 1332

Query: 811  IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
            I+G V++ ++P L P D+R ++AV  P+L      L     G+ P  +  +G D DGD  
Sbjct: 1333 IEGDVIVGRHPALLPTDMRKVKAVFVPKLQDFKGILFCSIHGELPLASILAGGDYDGDEG 1392

Query: 871  FVTWDENLIPPSKKS 885
             + W++ ++ P K +
Sbjct: 1393 TIIWEQRIVHPFKNA 1407


>gi|154285562|ref|XP_001543576.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150407217|gb|EDN02758.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1055

 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 14/150 (9%)

Query: 732 PQTEPHLRGMLTCIRAAQ--LWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEP 789
           P  EP L   +   R  Q  L  L+ K +I V    +     D  GVL   +  +  S  
Sbjct: 546 PMDEPQLTFEVVQWRLLQDYLDNLK-KLKITVSQSTFAYCVADPFGVLRPDEVHLGFSRE 604

Query: 790 FLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFP 849
           +      +HGS   E   + V+     +A+ P     DI+  ++V   EL H+ D +VFP
Sbjct: 605 W------EHGSAGTELHDIDVL-----LARLPAHLATDIQKRKSVYKNELRHMKDVIVFP 653

Query: 850 QKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
             GD P  +  SG D DGD  +V WD  ++
Sbjct: 654 TTGDTPLASLLSGGDYDGDQCWVCWDPIIV 683


>gi|414588065|tpg|DAA38636.1| TPA: hypothetical protein ZEAMMB73_143695 [Zea mays]
          Length = 214

 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 13/95 (13%)

Query: 933  DHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKI 992
            D  E  ++ EN I L +L   A+D    G  V +  HL+ K YP FM K+ ++SY S+ I
Sbjct: 10   DQDEKKSIVENMIKLVDLYYAALD----GHKVDVDRHLRVKAYPHFMEKKGFESYHSSSI 65

Query: 993  LGRLYRQSKDAY----DEDISVS-----SEVDINP 1018
            LGR+Y ++++      DE I ++     SEV+  P
Sbjct: 66   LGRIYDETEEIIAQQCDEQIQITTLACFSEVESTP 100


>gi|341039071|gb|EGS24063.1| hypothetical protein CTHT_0007750 [Chaetomium thermophilum var.
            thermophilum DSM 1495]
          Length = 392

 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 68/150 (45%), Gaps = 29/150 (19%)

Query: 861  SGSDLDGDLYFVTWDENLI--PPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVN 918
            SG DLDGDL+ V WD  L    P  +++ P +Y       L   +  RD+  FFA     
Sbjct: 110  SGGDLDGDLFHVIWDPALFNAKPKLETFEPADYPRIPPLELEGEITIRDMANFFA----- 164

Query: 919  ENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLY-PD 977
             +  TI                D +C+ LA+LA++AV+  KTG+ V M    K + + PD
Sbjct: 165  -DFKTILA--------------DPDCMKLAKLASSAVNLSKTGRPVDMTQLPKCRRWRPD 209

Query: 978  FMGKEAYQSYKSNKILGRLYRQSKDAYDED 1007
            F     +    + KIL + Y    + YD D
Sbjct: 210  F-----FAPASNLKILHK-YEIELEQYDMD 233


>gi|290980534|ref|XP_002672987.1| predicted protein [Naegleria gruberi]
 gi|284086567|gb|EFC40243.1| predicted protein [Naegleria gruberi]
          Length = 942

 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 134/338 (39%), Gaps = 67/338 (19%)

Query: 615 AYQIRYAGCKGVV-----ACWP------AKGDGIRMSLRESMNKFQSHHTT---LEICSW 660
           A Q+R  G KGV+     + W             ++ LR SM KF+ +++    ++I + 
Sbjct: 320 AMQVRILGAKGVIQKVNKSMWAELLKKHKLPSNTKVILRNSMVKFEGNYSIYNKIDILNV 379

Query: 661 TRFQPGFLNRQIIT-LLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQG 719
            R   G +NR I++ LL      +EM    ++   ++L +++ + D    +     ++ G
Sbjct: 380 ARVHGGNINRNIMSCLLQMTTNEEEMEKLFKNFYETQLMEIVENKDNPEYLCNVLLSQSG 439

Query: 720 NTAA-------IM---------LSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPA 763
            T+        IM         +S+      E     M+     +    ++ K   F+  
Sbjct: 440 ETSQESIARDLIMAEHSLDNYFISSVVKDNIESKFESMV-----SDKLSMKCKHPGFLSG 494

Query: 764 GRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCL 823
               MG  DE   L+  +  I  S+             +A+  K       V++ +NP  
Sbjct: 495 ----MGVYDESSTLKHDEVHIPCSKLI-------RSLDYAKIDK-------VLVYRNPLA 536

Query: 824 HPGDIRILEAVDHPELHHLY---DCLVFPQKGDRPHTNE----ASGSDLDGDLYFVTWDE 876
           + GDI+ L+ V HP    L    D +VF    +     E     +G DLDGDLY + +D 
Sbjct: 537 YEGDIQCLKLVKHPPTEFLQSRRDVIVFGHNPNYKKVPEPLCYMAGGDLDGDLYEIIFDP 596

Query: 877 NLIPPSKKSW-PPMEYNAAEA-----KTLTRPVDQRDI 908
            ++    ++  P + YN   A     KT+   +   D+
Sbjct: 597 EIVKLFDQNLKPKLNYNDGAATNKVTKTVKNSLSMEDV 634


>gi|395331410|gb|EJF63791.1| hypothetical protein DICSQDRAFT_55194 [Dichomitus squalens LYAD-421
           SS1]
          Length = 1069

 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 119/307 (38%), Gaps = 39/307 (12%)

Query: 694 LSKLNQMLVDSDVAF--EVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLW 751
           LS+L+  L     A+  + ++ + +    T   ++ +GF P     L   L  +    + 
Sbjct: 536 LSQLDTALRQQSSAWWEDPISGSPSSLEETCMTLIDSGFRPDDCAVLGAKLREVAKKVVK 595

Query: 752 GLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVI 811
             + K R  VP         D  GVL+  +  ++ S   L +    H  R  +     ++
Sbjct: 596 TFQTKYRFAVPMSCSAFIVPDPYGVLKANEVHVRSSRRNLPD----HQGRLTD-----LV 646

Query: 812 KGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKG--------DRPHTNEASGS 863
            G V++ ++PC  P D++ ++AV H  L H  D +V   +         +R   +   G 
Sbjct: 647 LGDVLVTRHPCKVPSDVQKVKAVFHERLRHYCDVIVVSTESQTFRGEPLNRHLASLTGGG 706

Query: 864 DLDGDLYFVTWDENLI-------PPSKKSWPPM-----EYNAAEAKTLTRPVDQRDIIEF 911
           D DGD   V WD +++       P      PPM     + N A        +      EF
Sbjct: 707 DYDGDTMEVFWDPDIVNAFHIPDPRVFAVEPPMVRACLQKNTAMVTEYLSQIPSTASEEF 766

Query: 912 FAKHMVNENLGTICNAHVVHA-----DHSEY--GALDENCILLAELAATAVDFPKTGKIV 964
               +    LG + +  +V       ++S Y  G    + I LA +    +D  KTG + 
Sbjct: 767 KIYSLQKYLLGALQDKSLVGQYSTWWENSTYANGYNHSDTIFLAYMFCAILDGSKTG-VT 825

Query: 965 TMPAHLK 971
            +PA  K
Sbjct: 826 VVPAKYK 832


>gi|328855319|gb|EGG04446.1| hypothetical protein MELLADRAFT_117081 [Melampsora larici-populina
           98AG31]
          Length = 789

 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 14/110 (12%)

Query: 772 DELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRIL 831
           D  G L+ G+ F+Q+S       F    +       +QV++G  ++A++PC+HP D R +
Sbjct: 508 DPTGTLKEGEVFLQLSH------FVDQDTALP----IQVLRGECIVARSPCVHPCDARKV 557

Query: 832 EAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
            AV +  L    D LV    G+R   +  SG    GD   V WD ++  P
Sbjct: 558 TAVANQNLVRYDDVLVCSVLGERSLLDYLSG----GDTVTVIWDPHITEP 603


>gi|323448091|gb|EGB03994.1| hypothetical protein AURANDRAFT_67557 [Aureococcus anophagefferens]
          Length = 1507

 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 152/402 (37%), Gaps = 67/402 (16%)

Query: 508 FLAFSSSQLRDCSAWFFSEDGKTSVL--DIKKWMGRFTDKNIAKCAARMGQCFSSTYATV 565
           F A +   LRD S     E  + +++  ++++ +GR       K A R+   FS T   V
Sbjct: 476 FFAEAGPGLRDVSV----EAVRDAIVPPEVRRALGRR------KAAKRLRLAFSKTLRGV 525

Query: 566 EVPPTEVD-PELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCK 624
           ++ P +V  P  P    +G    DG+  ++   A+  +     D      A QIR+ G K
Sbjct: 526 DLAPDQVAYPREPIRAGDGEDAVDGLALVS-RTALRESGLWSFD------AVQIRFRGAK 578

Query: 625 GVVACWPAK------GDGIRMSLRESMNKF---QSHHTTLEICSWTRFQPGFLNRQIITL 675
            +             GDG  ++L  S  KF   ++    LE  S  R +   L+ Q +  
Sbjct: 579 AMALAVDDAYLRENFGDGCHLALYPSAVKFRFAEAASAPLEFVSCARRRSANLSEQHVAA 638

Query: 676 LSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAA-----IMLSAGF 730
           L       +   ++ D    +L   L D +           + G+TA       ML AGF
Sbjct: 639 LVARGARADDLAALADETREELVCDLAD-ERRARRAFRGGGDDGDTAPWVLGPNMLRAGF 697

Query: 731 NPQTEPHLRGMLTCIRAAQLWGLR-----EKARIFVP--AGRWLMGCLDELGVLEGGQCF 783
             + EP L+  L      +L G +     + +RI +P  A   L    D    L  G C 
Sbjct: 698 ALE-EPLLQHCLRICAKQKLRGWKGDGDEDTSRIALPRSAAARLYVVADPTSSLAPGHCV 756

Query: 784 IQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE--LHH 841
           + V +               E K    I+G V I  +P L P D+ +L+AV  P   L  
Sbjct: 757 VGVDDD--------------EVK----IEGPVAIMTDPTLAPEDVLVLDAVPPPPALLEA 798

Query: 842 L----YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
           L       L+ P     P      G D DGD   V W   ++
Sbjct: 799 LGRVPRGVLMLPTTARHPTAEFLCGGDYDGDTAVVLWRREIV 840


>gi|328850109|gb|EGF99278.1| hypothetical protein MELLADRAFT_79506 [Melampsora larici-populina
           98AG31]
          Length = 1048

 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 19/151 (12%)

Query: 742 LTCIRAAQLWGLREKARIFVPAGRWL----MGCLDELGVLEGGQCFIQVSEPFLGNCFSK 797
           L C+  A   G     R+ V   RW+    +  +  L +     C++  + P   +  ++
Sbjct: 502 LICLLEA---GFSASNRLVVEKLRWVKTHKLLQMRRLSIPISLSCYV-YAIPDPDSTGTR 557

Query: 798 HGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLY-DCLVFPQKGDRPH 856
           HG          ++    +I ++PC  P DI+ +  V + +L  LY D LV   +G R  
Sbjct: 558 HG----------ILARHALIWRSPCAAPIDIQKVRLVANEQLQRLYFDVLVCSTRGGRAV 607

Query: 857 TNEASGSDLDGDLYFVTWDENLIPPSKKSWP 887
            +  SG D DGD   VTWD+ L+ P + + P
Sbjct: 608 LSLLSGGDYDGDQVAVTWDKRLVDPFQNADP 638


>gi|353241842|emb|CCA73629.1| hypothetical protein PIIN_07582 [Piriformospora indica DSM 11827]
          Length = 1021

 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 21/177 (11%)

Query: 803 AETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASG 862
            + + +   KG V+I ++P L P DI+ +   +   L      ++   +G RP  +  SG
Sbjct: 621 GDNRAVDFTKGEVLIGRHPALLPTDIQKVRLANITSLKQKRGLIICSTQGSRPLADLLSG 680

Query: 863 SDLDGDLYFVTWDENLI-----PPSKKSWPPMEYNAAEAK-------------TLTRPVD 904
            D DGD   + WD N++       ++ S+ P E +A+  K             +++   +
Sbjct: 681 GDYDGDEAIIIWDRNVVNAFQNADTQLSFKPAEVDASFVKDSQTIQDLCHKIESMSEDQE 740

Query: 905 QRDIIEFFAKHMVNENLGTICNAHVVHA-DHSEYGALDENCILLAELAATAVDFPKT 960
           +  I E F + +    +  I N++ + A D   + +LD    +LA  +   +D PKT
Sbjct: 741 RATIAEHFLESLKMPLIHGIYNSYYLKAIDKFGFDSLDAR--ILAHKSNMLLDAPKT 795


>gi|170084677|ref|XP_001873562.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651114|gb|EDR15354.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1268

 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 12/164 (7%)

Query: 725 MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI 784
           ++ AGF+P     L+  +  +    +    EK RI +          D  G+LE GQ + 
Sbjct: 798 LIQAGFHPSQCKILQDKIKFMVQQTINSSVEKYRIPIKESTGGYIVADPTGLLEEGQIYY 857

Query: 785 QVSEPFLGNCFSKHGSRFAETK-KLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLY 843
           + S P              +T+    V++G VV+ + P   P D++ + AVD PEL +  
Sbjct: 858 RSSVPMTD----------PDTEMDYFVLQGEVVLGRYPIRLPSDMQKVTAVDIPELFNWP 907

Query: 844 DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWP 887
           D ++   KG     +  SG D DGD   V  D+ LI  S K+ P
Sbjct: 908 DVIIVSTKGKFSLASLLSGGDQDGDELLVIKDK-LIVDSFKNQP 950


>gi|313237377|emb|CBY12568.1| unnamed protein product [Oikopleura dioica]
          Length = 316

 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 9/130 (6%)

Query: 535 IKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKI 593
           I K+ G F   K + K AAR+G   S+T     +   +   E  DI  +G  F+DG G++
Sbjct: 26  IWKYFGDFEKIKTVPKYAARLGLLISATRHAEFIEDGKWQLE-KDIVHHGCNFTDGCGRM 84

Query: 594 TPDLAM------EVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKG-DGIRMSLRESMN 646
           +  LA         A + K      P   QIR+ GCKG++   P+    G  + LRES  
Sbjct: 85  STQLAQRFTLNKHCANRYKHQSFEVPSIVQIRFMGCKGILVHDPSLDFSGKDVILRESQK 144

Query: 647 KFQSHHTTLE 656
           KF+ +  T++
Sbjct: 145 KFEWNFNTIK 154


>gi|384495848|gb|EIE86339.1| hypothetical protein RO3G_11050 [Rhizopus delemar RA 99-880]
          Length = 150

 Score = 50.8 bits (120), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 27/148 (18%)

Query: 1033 VDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGEL----KERL 1088
            V +I  A   +  YD +L  L+  + V  E EL+TG++    K+  + +G+      + +
Sbjct: 2    VSYINKARELRDHYDVKLAALINHHGVKTETELLTGYV---VKWEKKGKGKTVYKQDDNM 58

Query: 1089 KHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFER-----KASAWYQVTYHPEWVKKSL 1143
              S   L+ E+   FE+     E + + ++  L +R     KA+AWY VTYHP+  KK  
Sbjct: 59   LKSVRQLKNEWVDEFER-----EFIGKHKQIDLSKRNEIYAKAAAWYYVTYHPDERKK-- 111

Query: 1144 DLQEQDSARSVVLLSFAWIANDYLARIK 1171
                      +   SF W    YL  IK
Sbjct: 112  --------YGLEYFSFPWTIYKYLCHIK 131


>gi|393904651|gb|EJD73759.1| hypothetical protein LOAG_18838 [Loa loa]
          Length = 543

 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 90/190 (47%), Gaps = 33/190 (17%)

Query: 330 FEIMFLVNAVMHKGIINQHQL------SDSFFDLLRGQ---SREVNVAALKHIYSY---- 376
           F + +L+ A++ +G + + Q+       D+F D++  +   + E+ + AL+ + +     
Sbjct: 366 FGLEYLIAALLSRGAVVKDQILIDNKTRDAFIDMILQRFKDNEELTLEALERLINMIDET 425

Query: 377 -----KWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVE 431
                 +  F   +   L Q+ +L+  E+Y+  K+ +    VR++VITPT+   + PE+ 
Sbjct: 426 KEVPCLFTSFQKIRNSLLGQKDVLE--EIYQENKR-EGYQRVRKVVITPTRVLLVVPELL 482

Query: 432 LSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRV 491
           + NRVLR +    +  LR+ F D+    +  N    F   +++  T N+ S         
Sbjct: 483 MGNRVLRTFDKDGNGALRIQFRDDDGTPLRLNTTGLF---LIQTTTFNTLS--------- 530

Query: 492 RSILSGGFYL 501
           R I  GG +L
Sbjct: 531 RGIYIGGIFL 540


>gi|393218056|gb|EJD03544.1| hypothetical protein FOMMEDRAFT_154620 [Fomitiporia mediterranea
            MF3/22]
          Length = 1331

 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 102/257 (39%), Gaps = 39/257 (15%)

Query: 725  MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVP--AGRWLMGCLDELGVLEGGQC 782
            ML AGF P   P LR  L  +    +   ++   + VP  A  ++    D  GVLE  + 
Sbjct: 842  MLRAGFTPLKCPVLREKLKNVLTQTVKAYQDNYHVPVPRSAEAFIAPDPDPHGVLEEDEI 901

Query: 783  FIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
            F + SEP      S     F          G V++++NP     D++ + AV H +L   
Sbjct: 902  FFRCSEPISDPTVSIDPHTFL---------GPVLVSRNPTRVASDVQKVTAVHHDKLLSY 952

Query: 843  YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI-----------PPSKKSWPPMEY 891
             D ++F  KG R      S ++ DGD   V  +  L+           PP+ ++    E 
Sbjct: 953  TDVIIFSVKGAR------SLANYDGDTVTVFAEPALVDAFSNSDYVAEPPTVRAAFQEEV 1006

Query: 892  NAAEA-----KTLTRPVDQRDIIEFFAKHMVNENLGTICNAH--VVHADHSEYGALDENC 944
                      K + R   + +I +     + +  +G   N H  VV++     G  +   
Sbjct: 1007 EKVSVFLDRMKGMGREERRTEIAKKVLTGLSDGKVGLYSNMHDNVVYS----TGYNNSEA 1062

Query: 945  ILLAELAATAVDFPKTG 961
            I LA +  T +D  K+G
Sbjct: 1063 IRLAYMFTTCLDASKSG 1079


>gi|224144332|ref|XP_002336131.1| hypothetical protein POPTRDRAFT_584507 [Populus trichocarpa]
 gi|222873590|gb|EEF10721.1| hypothetical protein POPTRDRAFT_584507 [Populus trichocarpa]
          Length = 211

 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 936  EYGALDENCILLAELAATAVDFPKTG-KIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILG 994
            E   + +N  LL ++   A+D PK G + + +P  LK +L+P FM K   ++Y+S  ILG
Sbjct: 14   EIACVKKNINLLIDIYYDALDAPKKGGRKIEVPEALKAELFPHFMEKHEKKTYRSTSILG 73

Query: 995  RLYRQSKDAYDEDISVSSEV 1014
            ++Y + K AY ED+ +SS V
Sbjct: 74   KIYDKVK-AY-EDMDLSSNV 91


>gi|392570629|gb|EIW63801.1| hypothetical protein TRAVEDRAFT_138069 [Trametes versicolor
           FP-101664 SS1]
          Length = 1030

 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 9/155 (5%)

Query: 725 MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFI 784
           +L AGF+P   P L   L  I +  +  +     + +P         D  GVL+ G+   
Sbjct: 538 LLQAGFHPLRLPALYEKLRKITSNVIEDIIRDFHVSIPLSAEAFIVPDPYGVLKPGEIHF 597

Query: 785 QVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD 844
           + S+               E     ++ G V+I +NP   P D++ + AV H  L    D
Sbjct: 598 RSSKDLKSAL---------EDLNPNILLGDVLIYRNPNRLPSDVQKVTAVQHELLADYAD 648

Query: 845 CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
            +V P +G     +  +G D DGD+    +D  L+
Sbjct: 649 VIVLPSRGPCSFASMLAGGDYDGDVCVCIYDPRLV 683


>gi|402576653|gb|EJW70611.1| hypothetical protein WUBG_18482, partial [Wuchereria bancrofti]
          Length = 59

 Score = 49.3 bits (116), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 504 RKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFS 559
           R F +L  S+SQ+RD   +F+ +        I++ +G+F   NI K  +RMGQCF+
Sbjct: 1   RHFVYLGSSNSQMRDNGCYFYDDGKGGQAHKIREQLGKFDSCNIPKMMSRMGQCFT 56


>gi|403159921|ref|XP_003890550.1| hypothetical protein PGTG_20838 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|375169335|gb|EHS63855.1| hypothetical protein PGTG_20838 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1158

 Score = 48.5 bits (114), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 17/158 (10%)

Query: 725 MLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGR--WLMGCLDELGVLEGGQC 782
           ML+AGF    EP  R ++T +R  +   +    +  VP  +  +L    D  G L+  + 
Sbjct: 595 MLAAGF----EPRNRYIVTKLRKIKEDKISNAIKFRVPIAQSTYLYVMPDPTGTLKEDEA 650

Query: 783 FIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
           F+Q S       F  + +      KL  +    +++++PC+   D R +  VD+  L  +
Sbjct: 651 FLQFS------SFEDYQTGI----KLSNLVCPAIVSRSPCVASIDARKINLVDNDILRDV 700

Query: 843 Y-DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
           Y D LV   +G     +  SG D DGD   V WD  L+
Sbjct: 701 YYDVLVCSIQGKTSLLSLLSGGDYDGDQVMVIWDPVLV 738


>gi|395335049|gb|EJF67425.1| hypothetical protein DICSQDRAFT_177042 [Dichomitus squalens
           LYAD-421 SS1]
          Length = 1306

 Score = 48.5 bits (114), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%)

Query: 813 GFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFV 872
           G V+I +NPC  P D++ + AV    L    D +V P  G R   +  +G D DGD+  V
Sbjct: 871 GEVLIYRNPCRLPSDVQKVTAVQCDVLAAYTDVIVLPTVGARSFASYLAGGDYDGDVAVV 930

Query: 873 TWDENLI 879
            +D+ L+
Sbjct: 931 IYDDRLV 937


>gi|224093872|ref|XP_002310028.1| hypothetical protein POPTRDRAFT_654879 [Populus trichocarpa]
 gi|222852931|gb|EEE90478.1| hypothetical protein POPTRDRAFT_654879 [Populus trichocarpa]
          Length = 189

 Score = 48.1 bits (113), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 56/187 (29%)

Query: 957  FPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDI 1016
            FP T K + +P  LK +L+P FMGK   ++Y+S  ILG++Y + K AY ED+ +SS    
Sbjct: 4    FP-TLKQIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVK-AY-EDMDLSSN--- 57

Query: 1017 NPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLN--------GLLEQYKVNREEELVTG 1068
                                 D W   C +DG+++        GL  QY+      L  G
Sbjct: 58   ---------------------DVWKLPC-FDGEVHESCLVKWKGLYGQYRTEMRNALQAG 95

Query: 1069 HIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASA 1128
                            KE+   +   ++K    ++E  + +   LS      +FE +A A
Sbjct: 96   ----------------KEKNNEANEVIKKYKEILYEAAEFN---LSRRRDEEIFE-EARA 135

Query: 1129 WYQVTYH 1135
             YQVTY+
Sbjct: 136  LYQVTYN 142


>gi|402576169|gb|EJW70128.1| hypothetical protein WUBG_18968 [Wuchereria bancrofti]
          Length = 123

 Score = 48.1 bits (113), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 578 DIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP 631
           D  +  Y FSDG+GK++ + A ++A  + L  + P C YQIR+ G KGV++  P
Sbjct: 26  DTNQASYTFSDGVGKVSKEFAEKIAFDIGLGTSVPSC-YQIRHRGIKGVLSVDP 78


>gi|409052182|gb|EKM61658.1| hypothetical protein PHACADRAFT_135496 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 913

 Score = 47.8 bits (112), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%)

Query: 809 QVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGD 868
            ++ G  ++ +NP     D+R + AVD PEL    D +V P KG     +  +G D+DGD
Sbjct: 509 HLMLGDCLLYRNPARLASDVRKVRAVDVPELVLYKDVIVVPCKGPVSLPSMLAGGDVDGD 568

Query: 869 LYFVTWDENLIPP 881
                WD  L+ P
Sbjct: 569 TAVCIWDPALVKP 581


>gi|302693755|ref|XP_003036556.1| hypothetical protein SCHCODRAFT_102609 [Schizophyllum commune H4-8]
 gi|300110253|gb|EFJ01654.1| hypothetical protein SCHCODRAFT_102609, partial [Schizophyllum
           commune H4-8]
          Length = 1168

 Score = 47.4 bits (111), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 29/148 (19%)

Query: 725 MLSAGFNPQTEPHLRGMLTCI--RAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQC 782
           ML AGF PQT   LR  L  +  R AQ    + +  +      W++   D  G L+ GQ 
Sbjct: 646 MLQAGFQPQTCEFLRAKLEWLTKRVAQRSIKQMRIDVAHSFSAWIVP--DPTGRLQPGQM 703

Query: 783 FIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEA--------- 833
           + + S        S+       T   QV+ G  +I +NPC  P D++ +           
Sbjct: 704 YFKSS--------SRDLVGLDGTPTDQVL-GDALITRNPCKLPTDVQKVRMPLGRADAAA 754

Query: 834 -------VDHPELHHLYDCLVFPQKGDR 854
                  VD P+L HL+D +V P  G R
Sbjct: 755 HPLQWTFVDEPQLRHLFDVIVLPINGPR 782


>gi|390599418|gb|EIN08814.1| hypothetical protein PUNSTDRAFT_44349 [Punctularia strigosozonata
           HHB-11173 SS5]
          Length = 1065

 Score = 47.0 bits (110), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 24/166 (14%)

Query: 721 TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLRE-KARIFVPAGRWLMGCLDELGVLEG 779
           T   +L +GF P        +   IR+  +  ++  + +I +P         D  G L+ 
Sbjct: 655 TVMALLDSGFTPACGVLASKLDNVIRSILMNFVKPPRFKIELPMSCTAFITPDPTGTLDP 714

Query: 780 GQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
           G+ FI+          S H +       L  IK   +I        G++ +++AV  P L
Sbjct: 715 GEIFIR----------SSHDNVIG----LDGIKTDTII--------GEV-LVKAVYRPAL 751

Query: 840 HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS 885
           H   + +V   KGDR   +  +G D DGD  FVTWD  ++ P K +
Sbjct: 752 HRYTNQIVISVKGDRSLASILAGGDYDGDKCFVTWDPAIVEPFKNA 797


>gi|302413493|ref|XP_003004579.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
 gi|261357155|gb|EEY19583.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
          Length = 139

 Score = 46.6 bits (109), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 27/163 (16%)

Query: 668 LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLS 727
           LNRQ+I +L  + V DE F+S Q   L + +              A  A   NT A   S
Sbjct: 3   LNRQMIKILEDMGVRDEWFFSQQKRELERRH--------------AVTAGAWNTGAFCSS 48

Query: 728 -AGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQV 786
            A     T  H     T ++  +L  L+ KARI +P G  L G +DE G L  G+  +  
Sbjct: 49  KASARHLTSRHSSRRSTMLKELRL--LKFKARIPMPQGVTLFGIMDESGFLSEGEVSVCY 106

Query: 787 SEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIR 829
                 +C+  +GS   ++    +  G + + ++P L+PGDI+
Sbjct: 107 D-----SCY--NGSLPIDST---LNDGNIPVIRSPALYPGDIQ 139


>gi|361124327|gb|EHK96429.1| putative RNA-dependent RNA polymerase 1 [Glarea lozoyensis 74030]
          Length = 900

 Score = 46.2 bits (108), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 815 VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTW 874
           V++A++P     DI+ ++AV   EL  L D +VF  KG+     + SG D DGDL ++ W
Sbjct: 486 VLVARSPAHFVSDIQKVKAVAKVELIGLKDVIVFSTKGNPSLAAKLSGGDYDGDLAWLCW 545

Query: 875 DENLI 879
           + +++
Sbjct: 546 EPSIV 550


>gi|403415588|emb|CCM02288.1| predicted protein [Fibroporia radiculosa]
          Length = 1313

 Score = 45.8 bits (107), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 105/275 (38%), Gaps = 60/275 (21%)

Query: 724  IMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCF 783
            ++L+AGF P           C+  A+L G  +KA I   A  +       + V    + F
Sbjct: 823  VLLAAGFMPDK--------LCVLEAKLNGTVKKA-IQSNANSF------HIEVPMSAKAF 867

Query: 784  IQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLY 843
            +   E    N  +  G      + +  I G V++ ++PC  P D++ L +V +  L    
Sbjct: 868  VVPGESSSRNLLALDG------QWMDQILGEVIVTRHPCKTPTDMQKLVSVFNNRLIRFV 921

Query: 844  DCLVFPQKGD--------RPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWP-----PME 890
            D +V   KG         R   +   G D DGD   V WD  LI   + + P     P E
Sbjct: 922  DVIVVSVKGHLFNNEFLPRHLASMTGGGDYDGDTVEVYWDPRLIENFRNANPNFAKEPPE 981

Query: 891  YNAAEAKTLTRPVDQRDIIEFFAKHMVNEN-----------LGTICNAHVV-------HA 932
              A+  K      +   + EF  +     N           LG++ N   V        A
Sbjct: 982  VQASLVK------NSETVAEFLERTASLRNGELLHEYQKFLLGSLLNTSRVGTYSTWWEA 1035

Query: 933  DHSEYGALDENCILLAELAATAVDFPKTGKIVTMP 967
               + G   +  I LA + +  +D PKTG  V++P
Sbjct: 1036 SIYKNGYSHKTTIFLAYMFSAILDGPKTG--VSVP 1068


>gi|219117572|ref|XP_002179579.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408632|gb|EEC48565.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|225382106|gb|ACN89265.1| putative RNA-dependent RNA polymerase [Phaeodactylum tricornutum]
          Length = 976

 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 33/127 (25%)

Query: 766 WLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHP 825
           ++ G  D  G +  G  F+  S+PF  N                     + + ++PC+ P
Sbjct: 748 FMPGYADPTGAIPHGHVFVTGSKPFQEN--------------------LLFVTRSPCIFP 787

Query: 826 GDIRIL-EAVDHPE---------LHHL-YDCLVFPQK--GDRPHTNEASGSDLDGDLYFV 872
            D R+L   V  P          L+ L +  L+F     G +P     +  DLDGDLYFV
Sbjct: 788 SDGRLLPNLVTKPNAMVIDDWNWLNSLPFGALIFADATPGMKPLPAHIANGDLDGDLYFV 847

Query: 873 TWDENLI 879
            WD  ++
Sbjct: 848 CWDSEIL 854


>gi|408399323|gb|EKJ78431.1| hypothetical protein FPSE_01388 [Fusarium pseudograminearum CS3096]
          Length = 1860

 Score = 45.4 bits (106), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 33/99 (33%)

Query: 950  LAATAVDFPKTGKIVTMPAHLKPKLY-PDF------------------------------ 978
            + +TAVDF KTG  V +    KP  Y PDF                              
Sbjct: 1    MHSTAVDFSKTGIPVDVKKLPKPPFYRPDFLATVPPLKVYDIDQIDLIVDHQEPVHEEDT 60

Query: 979  MGKEAYQSYKSNKILGRLYR--QSKDAYDEDISVSSEVD 1015
            MG+  ++ Y+S+KILGRLYR    K  +DEDI  S+ +D
Sbjct: 61   MGQAKHKYYRSDKILGRLYRNVNEKKIWDEDIHRSTTMD 99


>gi|451994086|gb|EMD86557.1| hypothetical protein COCHEDRAFT_1034369 [Cochliobolus
           heterostrophus C5]
          Length = 110

 Score = 45.4 bits (106), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 33/122 (27%)

Query: 723 AIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG-- 780
           A M+   F    EP +  +L   RA  +  L+EKARI +  G +L+GC+DE   L+    
Sbjct: 2   AAMVLDDFMGSREPFIMSLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETKKLKEHFN 61

Query: 781 ------------------QCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPC 822
                             + F+QVS P      +  G          +I+G  ++A+NP 
Sbjct: 62  DPRSRRDATRDGKLATLPEIFLQVSNP------NSKGHYI-------IIEGICIVARNPS 108

Query: 823 LH 824
           LH
Sbjct: 109 LH 110


>gi|397613827|gb|EJK62448.1| hypothetical protein THAOC_16940 [Thalassiosira oceanica]
          Length = 552

 Score = 44.3 bits (103), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 16/137 (11%)

Query: 806 KKLQVIKGFVVIAKNPCLHPGDIRILEAV-------DHPELHHL----YDCLVFPQ--KG 852
           K ++  +  V+++++PC++  D+R  + V       +H E   L    +  LVFP    G
Sbjct: 292 KHIKTYQDKVIVSRSPCINNLDMRTAKTVVAKPRKMNHDEWEWLNSLPFGVLVFPNPPTG 351

Query: 853 DRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFF 912
            +    + +  DLDGD YF+ WD+ L+  +  + P  E  A+   T T   + +D   +F
Sbjct: 352 TQSMPEQIANGDLDGDRYFICWDDALV-GNIVTQPIEERKASPDTTSTAVQEGKDPSRWF 410

Query: 913 A--KHMVNENLGTICNA 927
           +  + M  E +G + ++
Sbjct: 411 SSMQEMTLEMVGEMAHS 427


>gi|340960195|gb|EGS21376.1| hypothetical protein CTHT_0032310 [Chaetomium thermophilum var.
            thermophilum DSM 1495]
          Length = 1946

 Score = 44.3 bits (103), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 123/326 (37%), Gaps = 80/326 (24%)

Query: 806  KKLQVIKGFVVI--AKNPCLHPGDIRILEAVDHPELHHLYD------------CLVFPQK 851
            +K+   K F++   A+    H   IR L+ +  P L    +             L   + 
Sbjct: 721  QKVTGAKAFIIQSEAQGASQHSTAIRDLDTISTPLLETARNNASYVIKFIVNRALNSTKS 780

Query: 852  GDRPHTNEASGSDLDGDLY---FVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDI 908
            GD P+ N         DL+   F+T  +N        WP  E        +   + + D 
Sbjct: 781  GDTPYRNLL-------DLFVEDFITCLDN------PDWPAAELLLRLLMLMMVGLVENDK 827

Query: 909  IEFFAKHMVNENLGTICNAHVVHADHSEYGA----LDENCILLAELAATAVDFPKTGKIV 964
                AK+M  E LGT+C A      H    A     DE  + L++LAA+A++      + 
Sbjct: 828  SSIMAKNMALELLGTMCAAISKLRGHVRKMASALEADELSLFLSDLAASALE------LK 881

Query: 965  TMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYD 1024
            + P H+     P          Y++       Y QS+  ++ED  +SS            
Sbjct: 882  SRPEHMVAWTGP----------YRAT----LEYLQSRSRFNEDAQLSS------------ 915

Query: 1025 TDLEVPESVDFIADAWNQK-CS-YDGQLNGLLEQYK-----VNREEELVTGHIWSMPKYN 1077
                   ++ FI   W  K C+ YDG  + +LE+ +       R  E++    W   +Y 
Sbjct: 916  -------AMTFIISEWGSKICTCYDGYQDDVLERDQELGRLAYRLREMILDRKWLSTEYT 968

Query: 1078 SRKQGELKERLKHSYSALRKEFRQVF 1103
             +    L+ +L +S   LR +F + F
Sbjct: 969  YKDVSPLQAKLSYSIILLRSQFCEAF 994


>gi|255546343|ref|XP_002514231.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
 gi|223546687|gb|EEF48185.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
          Length = 114

 Score = 44.3 bits (103), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 811 IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD----CLVFPQKGDRPHTNEASGSDLD 866
           I G V++ +NP LH GDI +L+A     L          + FP KG +   +E +G D +
Sbjct: 28  ISGKVLVYRNPGLHFGDIHVLKATYVKALEDFVGNAKYAIFFPCKGPQSLADEIAGGDFN 87

Query: 867 GDLYFVT 873
            D+YFV+
Sbjct: 88  NDMYFVS 94


>gi|403364990|gb|EJY82270.1| RNA-dependent RNA polymerase [Oxytricha trifallax]
          Length = 126

 Score = 43.5 bits (101), Expect = 0.73,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 10/109 (9%)

Query: 552 ARMGQCFSSTYATVEVPPTEVDPELPDI--KRNGYVFSDGIGKITPDLAMEVAQKLKLDV 609
           AR  Q F+ T    E+  T+++  + DI   R G  F+DG G I+ +LA  + +   L+ 
Sbjct: 12  ARAAQLFTGTRYICELKKTQIE-YIGDIVNYRKGN-FTDGNGCISQELANRINRMYGLE- 68

Query: 610 NPPPC-AYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEI 657
               C AYQ R  GCKG +       + + + +R +M KF++  T+L I
Sbjct: 69  ---DCSAYQFRLGGCKGTLVVNQELQEEV-IQIRNTMKKFENSDTSLNI 113


>gi|242208926|ref|XP_002470312.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730619|gb|EED84473.1| predicted protein [Postia placenta Mad-698-R]
          Length = 842

 Score = 43.1 bits (100), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 53/233 (22%)

Query: 772 DELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRIL 831
           D LGVLE GQ  I+ S     N   + G      +   ++ G V++ ++PC  P D++ +
Sbjct: 513 DPLGVLEPGQVHIKSSR---RNLVDQDG------RPTDIVLGEVLVTRHPCKVPTDVQKV 563

Query: 832 EAVDHPELHHLYDCLVFPQKG--------DRPHTNEASGSDLDGDLYFVTWDENLIPPSK 883
            AV + +L    D +V   K         +R   +   G D DGD     W+  L+    
Sbjct: 564 TAVFNQKLSSYVDVIVVSIKDHVFNKKLLNRHLASCTGGGDYDGDTMEAFWNPALVE--- 620

Query: 884 KSWPPMEYNAAEAKTLTRP--------VDQRDIIEFFAKHMVNEN------------LGT 923
                  +  AE K L  P         +   + +F +++ ++ +            LG+
Sbjct: 621 ------GFRNAETKFLNEPKNVEKCLVKNTETVAQFLSRNPLSTDKDIMQPEIQKYLLGS 674

Query: 924 ICNAHVVHADHS-------EYGALDENCILLAELAATAVDFPKTGKIVTMPAH 969
           + ++ +V    +        YG      + LA +    +D  KTG +V   A+
Sbjct: 675 LRDSSMVGTYSTWWENAIYRYGYQHNRTVFLAYMFCAILDGSKTGVMVAQAAY 727


>gi|390604892|gb|EIN14283.1| hypothetical protein PUNSTDRAFT_49107 [Punctularia strigosozonata
           HHB-11173 SS5]
          Length = 166

 Score = 43.1 bits (100), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 772 DELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRIL 831
           D LGVL  G+ +   ++P                +    IKG V+I +NPC  P D++ +
Sbjct: 45  DPLGVLNPGEIYFSSTKPLRDEV---------TLENYNHIKGEVLIYRNPCRLPSDVQKV 95

Query: 832 EAVDHPELHHLYDCLVFPQKGDR 854
            AV   EL    D +++  KGD+
Sbjct: 96  NAVYRSELESWQDIILYSTKGDQ 118


>gi|290977359|ref|XP_002671405.1| predicted protein [Naegleria gruberi]
 gi|284084974|gb|EFC38661.1| predicted protein [Naegleria gruberi]
          Length = 283

 Score = 42.4 bits (98), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 828 IRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI 879
           +R+ +AV    L HL D +VF   G     +  SG+DLDGD +++ WD  L+
Sbjct: 1   MRLFQAVKKDCLTHLKDVVVFSSLGPEFVPSLISGADLDGDHFYIFWDSELV 52


>gi|238575571|ref|XP_002387758.1| hypothetical protein MPER_13331 [Moniliophthora perniciosa FA553]
 gi|215444192|gb|EEB88688.1| hypothetical protein MPER_13331 [Moniliophthora perniciosa FA553]
          Length = 59

 Score = 42.0 bits (97), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 13/62 (20%)

Query: 862 GSDLDGDLYFVTWDENLIPPS-------KKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAK 914
           G DLDGD+Y      NLIP S         ++ P EY  AE K L RP    D+ EF  +
Sbjct: 1   GGDLDGDVY------NLIPLSVLTEFTPANTYQPAEYKKAEKKMLNRPSTMADVAEFVME 54

Query: 915 HM 916
           ++
Sbjct: 55  YI 56


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.137    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,002,748,932
Number of Sequences: 23463169
Number of extensions: 804960727
Number of successful extensions: 1681507
Number of sequences better than 100.0: 782
Number of HSP's better than 100.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 1675730
Number of HSP's gapped (non-prelim): 1319
length of query: 1197
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 1043
effective length of database: 8,745,867,341
effective search space: 9121939636663
effective search space used: 9121939636663
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 83 (36.6 bits)