BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041430
(1197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J7N|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
pdb|2J7N|B Chain B, Structure Of The Rnai Polymerase From Neurospora Crassa
pdb|2J7O|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
Length = 1022
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 155/372 (41%), Gaps = 57/372 (15%)
Query: 549 KCAARMGQCFSSTYATVEVPPTEVDPELPDI---KRNGYVFSDGIGKITPDLAMEVAQKL 605
K +R+ S TYA + + P ++ D+ G V +DG+G+++ +A + L
Sbjct: 287 KLFSRIQLGLSKTYAIMTLEPHQIRHHKTDLLSPSGTGEVMNDGVGRMSRSVAKRIRDVL 346
Query: 606 KL-DVNPPPCAYQIRYAGCKGV-VACWPAKGDGIRMSLRESMNKFQ-----SHHTTLEIC 658
L DV P A Q R+ KG+ V GD + S K++ H TLE+
Sbjct: 347 GLGDV---PSAVQGRFGSAKGMWVIDVDDTGDEDWIETYPSQRKWECDFVDKHQRTLEVR 403
Query: 659 S-WTRFQPGFLNRQIITLLS------------------------------TLNVPDEMFW 687
S + + LN Q++ +L LN P E
Sbjct: 404 SVASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRLINDLQRQFSEQKHALNRPVEFRQ 463
Query: 688 SMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRA 747
+ +S S+ ++ S L Q T ++++GF+P+ + +L+ + ++
Sbjct: 464 WVYESYSSRATRV---SHGRVPFLAGLPDSQEETLNFLMNSGFDPKKQKYLQDIAWDLQK 520
Query: 748 AQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKK 807
+ L+ K I V ++ D GVLE + + S F R E
Sbjct: 521 RKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGFSSKF----------RDEEESF 570
Query: 808 LQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDG 867
+ V++A++P P DI+ + AV PELH L D ++F KGD P + SG D DG
Sbjct: 571 TLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHSLKDVIIFSTKGDVPLAKKLSGGDYDG 630
Query: 868 DLYFVTWDENLI 879
D+ +V WD ++
Sbjct: 631 DMAWVCWDPEIV 642
>pdb|3RQ0|A Chain A, The Crystal Structure Of A Glycosyl Hydrolases (Gh) Family
Protein 16 From Mycobacterium Smegmatis Str. Mc2 155
Length = 269
Score = 33.1 bits (74), Expect = 0.96, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 26 AAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAE 65
+A+L E G W R+K +C + ++P F++ NT E
Sbjct: 112 SAKLASVWEGGAGHTWEARIKFNCLTAGAWPAFWLGNTGE 151
>pdb|2FVZ|A Chain A, Human Inositol Monophosphosphatase 2
pdb|2FVZ|B Chain B, Human Inositol Monophosphosphatase 2
pdb|2FVZ|C Chain C, Human Inositol Monophosphosphatase 2
pdb|2FVZ|D Chain D, Human Inositol Monophosphosphatase 2
Length = 273
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 24/96 (25%)
Query: 120 LNQRGRTSTPFKLPDVCVEIGTLVS-------RDEF----FVAWRGPASGTD-------- 160
L + R ST D+ E LV R+ F F+A ASG
Sbjct: 23 LTEEKRVSTKTSAADLVTETDHLVEDLIISELRERFPSHRFIAEEAAASGAKCVLTHSPT 82
Query: 161 FLVDPFDGTCKFC-----FTRDIAFALKSSTEHAVI 191
+++DP DGTC F I FA++ E VI
Sbjct: 83 WIIDPIDGTCNFVHRFPTVAVSIGFAVRQELEFGVI 118
>pdb|2CQB|A Chain A, Solution Structure Of The Rna Recognition Motif In
Peptidyl- Prolyl Cis-Trans Isomerase E
Length = 102
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 71 DYEKVEPH---AFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGRTS 127
DYE E H AFV F + A+D +ELF GR ++V+L P R+ + G +S
Sbjct: 47 DYE-TEKHRGFAFVEFELAEDAAAAIDNMNESELF--GRTIRVNLA--KPMRIKESGPSS 101
>pdb|2CZH|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) With Phosphate Ion (Orthorhombic Form)
pdb|2CZH|B Chain B, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) With Phosphate Ion (Orthorhombic Form)
pdb|2CZI|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) With Calcium And Phosphate Ions
pdb|2CZK|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) (Trigonal Form)
pdb|2DDK|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) (Orthorhombic Form)
pdb|2DDK|B Chain B, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) (Orthorhombic Form)
Length = 299
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 24/96 (25%)
Query: 120 LNQRGRTSTPFKLPDVCVEIGTLVS-------RDEF----FVAWRGPASGTD-------- 160
L + R ST D+ E LV R+ F F+A ASG
Sbjct: 49 LTEEKRVSTKTSAADLVTETDHLVEDLIISELRERFPSHRFIAEEAAASGAKCVLTHSPT 108
Query: 161 FLVDPFDGTCKFC-----FTRDIAFALKSSTEHAVI 191
+++DP DGTC F I FA++ E VI
Sbjct: 109 WIIDPIDGTCNFVHRFPTVAVSIGFAVRQELEFGVI 144
>pdb|3EYJ|B Chain B, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYK|B Chain B, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
Length = 172
Score = 31.6 bits (70), Expect = 3.0, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 1047 DGQLNGLLEQ-----YKVNREEELVTGHIWSMPKYNSRKQGEL----KERL-----KHSY 1092
+G+LN L+E+ +++ +E E V G I + KY + +L E L +H+
Sbjct: 49 NGKLNRLIEKTNEKYHQIEKEFEQVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTI 108
Query: 1093 SALRKEFRQVFEKMDSDCELLSEDEKNALFE 1123
E ++FE++ +ED+ N FE
Sbjct: 109 DVTDSEMNKLFERVRRQLRENAEDQGNGCFE 139
>pdb|3MPR|A Chain A, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
pdb|3MPR|B Chain B, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
pdb|3MPR|C Chain C, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
pdb|3MPR|D Chain D, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
Length = 298
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 1015 DINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMP 1074
D N H D V + V + D++ +KC Y LNG + N E HI+ P
Sbjct: 178 DFNVDQTHQSYDAFVSKGV--LCDSY-EKCDYRYALNGTFNNFDPNSFTESRIDHIFVSP 234
Query: 1075 KYNSRKQGELKERLKHSYSALRKE 1098
++ ++ G L + + +KE
Sbjct: 235 SFHVKRYGVLTDTYRSVRENSKKE 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,374,073
Number of Sequences: 62578
Number of extensions: 1542632
Number of successful extensions: 3064
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3058
Number of HSP's gapped (non-prelim): 14
length of query: 1197
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1087
effective length of database: 8,089,757
effective search space: 8793565859
effective search space used: 8793565859
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)