BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041430
(1197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SG02|RDR6_ARATH RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1
SV=1
Length = 1196
Score = 1719 bits (4452), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 835/1198 (69%), Positives = 989/1198 (82%), Gaps = 3/1198 (0%)
Query: 1 MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYV 60
M EG K V QVS GGF + A +L YLE+EVG VWRCRLKTS TP SYP+F +
Sbjct: 1 MGSEGNMKKSVVTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEI 60
Query: 61 TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRL 120
+T+ + D+Y+KVEPHAFVHFA+ RA+DAAG+ L L+G+ LKVSLGP+NP+ L
Sbjct: 61 ADTSNIPSIDEYKKVEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSL 120
Query: 121 NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180
NQR RT+ P+KL + +EIGTLVSRD+FFV+WR A G DFLVDPFD TCKFCF + AF
Sbjct: 121 NQRRRTTVPYKLAGITLEIGTLVSRDDFFVSWR--AEGVDFLVDPFDNTCKFCFRKSTAF 178
Query: 181 ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
+ K + HAVI C++K+E LVR+I V+QY ++LQLASSPRVWYRTADDDI
Sbjct: 179 SFKDAVMHAVINCDYKLELLVRDIQTVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDT 238
Query: 241 VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS 300
VP D+LDDDDPWIRTTDFT GAIGRC+SYR+ IS R+ KL + Y RRVQ + +
Sbjct: 239 VPGDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVR 298
Query: 301 RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRG 360
P IR EP F P+SD FFCIH++EGISFEIMFLVN+V+H+G+ NQ QL++ FFDLLR
Sbjct: 299 WPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRN 358
Query: 361 QSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP 420
Q ++VN+A+LKH+ +YK PVFDA KRLKLVQEW+ K+P+L +Q +DI E+RRLVITP
Sbjct: 359 QPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVITP 418
Query: 421 TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
T+AYCLPPEVELSNRVLR+YK +A+RFLRVTFMDE +QT+N+NVLSYF+APIV+D+T +S
Sbjct: 419 TRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSS 478
Query: 481 FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540
FSQKT VFKRV+SIL+ GF LCGRK+SFLAFS++QLRD SAWFF+EDGKT V DIK WMG
Sbjct: 479 FSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMG 538
Query: 541 RFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAME 600
+F DKN+AKCAARMG CFSSTYATV+V P EVD E+PDI+RNGYVFSDGIG ITPDLA E
Sbjct: 539 KFKDKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNGYVFSDGIGTITPDLADE 598
Query: 601 VAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSW 660
V +KLKLDV+ PCAYQIRYAG KGVVA WP+K DGIR++LR+SM KF S HT LEICSW
Sbjct: 599 VMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICSW 658
Query: 661 TRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGN 720
TRFQPGFLNRQIITLLS L VPDE+FW MQ+SML KLN++L D+DVAFEVLTA+CAEQGN
Sbjct: 659 TRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQGN 718
Query: 721 TAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGG 780
TAAIMLSAGF P+TEPHLRGML+ +R AQLWGLREK+RIFV +GRWLMGCLDE G+LE G
Sbjct: 719 TAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHG 778
Query: 781 QCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHPEL 839
QCFIQVS+P + NCFSKHGSRF ETK L+V+KG+V IAKNPCLHPGD+RILEAVD P+L
Sbjct: 779 QCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQL 838
Query: 840 HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTL 899
HH+YDCL+FPQKGDRPHTNEASGSDLDGDLYFV WD+ LIPP++KS+P M Y+AAE K+L
Sbjct: 839 HHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSL 898
Query: 900 TRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959
R V+ +DII+FFA+++ NE LGTICNAHVVHAD SEYGA+DE C+LLAELAATAVDFPK
Sbjct: 899 GRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPK 958
Query: 960 TGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPV 1019
TGKIV+MP HLKPKLYPDFMGKE YQ+YKSNKILGRLYR+ K+ YDED SSE +P
Sbjct: 959 TGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEESTDPS 1018
Query: 1020 DIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSR 1079
I YD LE+P D I +AW KC YDGQL GLL QYKV +EEE+VTGHIWSMPKY S+
Sbjct: 1019 AIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSK 1078
Query: 1080 KQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWV 1139
KQGELKERLKHSY++L+KEFR+VFE+ D E LSE+EKN L+E+KASAWY VTYHPEWV
Sbjct: 1079 KQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWV 1138
Query: 1140 KKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
KKSL+LQ+ D + +LSFAWIA DYLARIKIR REM +ID++KPV+ LA+++A R+
Sbjct: 1139 KKSLELQDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFLAQRL 1196
>sp|Q8LHH9|SHL2_ORYSJ Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp.
japonica GN=SHL2 PE=2 SV=1
Length = 1218
Score = 1438 bits (3723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 737/1199 (61%), Positives = 887/1199 (73%), Gaps = 18/1199 (1%)
Query: 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKT 69
LV QVS GGFD V A +L +LE+EVG VWRCR+KTS TP +SYPDF +
Sbjct: 27 LVTTQVSLGGFDAGVAAGDLADFLEHEVGLVWRCRVKTSWTPPDSYPDFALPTAPASASA 86
Query: 70 DD----YEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGR 125
Y++V PHAFVHFA P RA D AG T L L G+ L+V+ P++ R+++R
Sbjct: 87 AAAPPRYDRVPPHAFVHFARPEGARRAADLAGETRLILRGKPLRVASAPDSSLRVSRRSS 146
Query: 126 TSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSS 185
+ PF+ PDV +E+G L S F AWRGP +G D VDPFDG C+ FTRD AF
Sbjct: 147 IA-PFRFPDVRLEVGALPSPGAFLAAWRGPDAGLDLSVDPFDGCCRLVFTRDTAFTFPGF 205
Query: 186 TEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDM 245
E A I+C+ K+EF VR++ V+ Y C ++LL+LA++P V YRTADDD VPFD+
Sbjct: 206 REVAAIRCDVKLEFPVRDVLEVRLY-RLDC-SLLLRLAAAPLVHYRTADDDFHEPVPFDL 263
Query: 246 LDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLS----- 300
LDDDDPWIRTTD TPSGAIGRC YRIS S+R K+ + + Y+ ERRV +
Sbjct: 264 LDDDDPWIRTTDITPSGAIGRCGVYRISFSARFWPKMDRALDYMRERRVAIVDCGGGWGP 323
Query: 301 -RPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLR 359
R +T+R+E +F PM D FFC+ + EG+ F ++F+VNA++HKGIINQHQL+ FF LL
Sbjct: 324 RRGLTVRDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLLG 383
Query: 360 GQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVIT 419
VNVAAL+ + K+PVFDAC RLK + ++P+L K DD EVRRLVIT
Sbjct: 384 RSEENVNVAALRDFWGDKFPVFDACGRLKKALNRVARNPKLLCS-KVGDDHAEVRRLVIT 442
Query: 420 PTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLN 479
PT+AYCLPPEVE SNRVLR Y ++ADRFLRVTFMDEG+Q +N NVL+ F APIV+D+ N
Sbjct: 443 PTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSN 502
Query: 480 SFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWM 539
F QKT V+KRVR +L+ GF++CGRK+SFLAFSS+QLRD SAWFF+ED KT+V I+KWM
Sbjct: 503 FFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWM 562
Query: 540 GRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAM 599
GRFT KN+AK AARMGQCFSSTYATV + P EVD D+ N Y+FSDGIGKITPDLA+
Sbjct: 563 GRFTSKNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNEYIFSDGIGKITPDLAL 622
Query: 600 EVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICS 659
EVA++L+L NPP AYQIR+AG KGV+A W GDG R+ LR SM KF+S+H LE+ S
Sbjct: 623 EVAERLQLTDNPP-SAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVS 681
Query: 660 WTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQG 719
WT+FQPGFLNRQII LLS+LNVPD +FW MQ++MLS LN +L D DVAFEVLT +CA+ G
Sbjct: 682 WTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTTSCADDG 741
Query: 720 NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG 779
NTAA+MLSAGF P+TEPHL+ ML IR+AQL L EKARIFVP GRWLMGCLDELGVLE
Sbjct: 742 NTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQ 801
Query: 780 GQCFIQVSEPFLGNCFSKHGSRFAET-KKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPE 838
GQCFI+ + P L + F KHGSRF+ T K +VI G VVIAKNPCLHPGD+RILEAVD PE
Sbjct: 802 GQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRILEAVDVPE 861
Query: 839 LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKT 898
LHHL DCLVFPQKG+RPH NEASGSDLDGDLYFVTWDE LIPP KKSW PM+Y+ EAK
Sbjct: 862 LHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQ 921
Query: 899 LTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFP 958
L R V Q DII+FF K+M++ENLG ICNAHVVHAD SEYGA+DE CI LAELAATAVDFP
Sbjct: 922 LPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFP 981
Query: 959 KTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINP 1018
KTGK+ MP HLKPK+YPDFMGKE QSYKS KILGRLYR ++A + D+ VS EV P
Sbjct: 982 KTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNGDV-VSQEV-CTP 1039
Query: 1019 VDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNS 1078
D+ YD DLEVP + DF+A AW KCSYD QL+ LL QY+V E ELVTGHI + K +S
Sbjct: 1040 NDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKNSS 1099
Query: 1079 RKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEW 1138
+KQG++K+RLK +YSALRKEF+ FE + SD + +DEKN L+E KASAWYQVTYHP+W
Sbjct: 1100 KKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKW 1159
Query: 1139 VKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
V+KS + D LSFAWI DYLARIK+RC ++ KPV LA Y+++RI
Sbjct: 1160 VEKSRGILGPDGEEIPASLSFAWIPVDYLARIKLRCHGKVRVEGQKPVERLAAYISERI 1218
>sp|Q9LQV2|RDR1_ARATH RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2
SV=1
Length = 1107
Score = 573 bits (1477), Expect = e-162, Method: Compositional matrix adjust.
Identities = 355/971 (36%), Positives = 531/971 (54%), Gaps = 72/971 (7%)
Query: 218 ILLQLASSPRVWYRTADDDILVLVPFDMLDD--DDPWIRTTDFTPSGAIGRCNSYRISIS 275
+++Q+ +P+++ + L+ D D D+ WIRTTDFT S IG+ ++ + +
Sbjct: 169 LVIQVIGAPKIFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELP 228
Query: 276 SR-HRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFCIHYEEGIS--FEI 332
+ + E R + + + VP+ DP G S FEI
Sbjct: 229 VHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDP------PPGFSLPFEI 282
Query: 333 MFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKR-----L 387
+F +N ++ ++ L F+ LL ++ + A + H + + + C
Sbjct: 283 LFKLNTLVQNACLSGPALDLDFYRLL--NQKKYDRALIDHCLEKLFHLGECCYEPAHWLR 340
Query: 388 KLVQEWLLKDPELYKGPKQIDD-IVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADR 446
++W+ K +DD +V + R+ +TP + Y PEV +SNRVLR Y +
Sbjct: 341 DEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINN 400
Query: 447 FLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKF 506
FLRV+F+DE L+ + + LS +S ++T+++ R+ S+L G + +KF
Sbjct: 401 FLRVSFVDEDLEKVRSMDLS----------PRSSTQRRTKLYDRIYSVLRDGIVIGDKKF 450
Query: 507 SFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATV 565
FLAFSSSQLR+ SAW F+ + + I+ WMG F +N+AK AAR+GQ FSS+ T+
Sbjct: 451 EFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETL 510
Query: 566 EVPPTEVDPELPDIK----RNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYA 621
V E++ +PD++ YVFSDGIGKI+ + A +VA+K L P A+QIRY
Sbjct: 511 NVRSDEIEV-IPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGL-TEFSPSAFQIRYG 568
Query: 622 GCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNV 681
G KGVVA P ++SLR+SM+KF+S +T L++ +W+++QP ++NRQ+ITLLSTL V
Sbjct: 569 GYKGVVAVDPNSSK--KLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGV 626
Query: 682 PDEMFWSMQDSMLSKLNQMLVDSDVAFEVL-TAACAEQGNTAAIMLSAGFNPQTEPHLRG 740
D +F Q ++ +L+ +L A E L A E N ++ G+ P EP L
Sbjct: 627 TDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSM 686
Query: 741 MLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGS 800
ML RA++L LR K RIF+ GR +MGCLDE LE GQ +Q S+P + G
Sbjct: 687 MLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPM------RPGR 740
Query: 801 RFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEA 860
RF +I G VV+AKNPCLHPGD+R+L+AV+ P L+H+ DC+VFPQKG RPH NE
Sbjct: 741 RF-------IITGPVVVAKNPCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNEC 793
Query: 861 SGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNEN 920
SGSDLDGD+YFV WD+ L+PP ++ PM+Y + L V ++ E+FA ++VN++
Sbjct: 794 SGSDLDGDIYFVCWDQELVPP--RTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDS 851
Query: 921 LGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMG 980
LG I NAH AD A + CI LA+ +TAVDFPKTG +P HL K YPDFM
Sbjct: 852 LGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFME 911
Query: 981 KEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAW 1040
K +Y+S ++G+L+R+ K+ IS+ S ++ YD D+EV +++ +A+
Sbjct: 912 KPDKPTYESKNVIGKLFREVKERAPPLISIKS-FTLDVASKSYDKDMEVDGFEEYVDEAF 970
Query: 1041 NQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFR 1100
QK +YD +L L++ Y + E E+++G I M K ++++ E + + ALRKE
Sbjct: 971 YQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD--AESIGRAVRALRKE-- 1026
Query: 1101 QVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFA 1160
L + E+ KASAWY VTYH + + +D LSFA
Sbjct: 1027 --------TLSLFNASEEEENESAKASAWYHVTYHSSYWGLYNEGLNRDH-----FLSFA 1073
Query: 1161 WIANDYLARIK 1171
W D L RIK
Sbjct: 1074 WCVYDKLVRIK 1084
>sp|Q7XM31|RDR2_ORYSJ Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp.
japonica GN=RDR2 PE=2 SV=1
Length = 1136
Score = 561 bits (1445), Expect = e-158, Method: Compositional matrix adjust.
Identities = 373/1017 (36%), Positives = 551/1017 (54%), Gaps = 108/1017 (10%)
Query: 217 AILLQLASSPRVWYRTADDDILVLVPFDMLDD------DDP---WIRTTDFTPSGAIGRC 267
AILLQL +PR+ TA V F +DD +D W+R DFTP+ + GRC
Sbjct: 177 AILLQLNYAPRI--HTAISGPAVNSRF--MDDRFHACKEDAKFSWVRALDFTPNYSFGRC 232
Query: 268 NSYRISIS-SRHRGKLSKVITY---LGERRVQ----VDSLSRPITIREEP-DFEVPMSDP 318
++ + + S + K + + LGE + V + S + + P D+ VP
Sbjct: 233 STLVLKLGKSALVSDILKSLPFSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVP---- 288
Query: 319 FFCIHYEEGISFEIMFLVNAVMHKG-IINQHQLSDSFFDLLRGQSREVNVAALKHIYSYK 377
+E++F +N++MH G I+ +H +D F L +E+ V + I+
Sbjct: 289 -----------YEVLFRLNSLMHMGKIVAKHVNADLFKAL-----QELPVDVSRRIFEKM 332
Query: 378 WPVFDAC-KRLKLVQE----------WLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCL 426
+ C L+ +Q+ LL + +G +++ ++ R+ ITP+K +C
Sbjct: 333 HKLESTCYGPLQFIQQEAYSMKRSHNVLLSNEGEGEGERKL---MKCYRVNITPSKIFCF 389
Query: 427 PPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTR 486
PE E++N V++ + A F+RVTF+DE +++N +S A I + F KT
Sbjct: 390 GPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAIS---ARIEQGFFSKPF--KTG 444
Query: 487 VFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTD-K 545
++ R+ SIL GF + + F FLAFS+SQLR S W F+ + + I++WMG F + +
Sbjct: 445 LYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASLNAGGIRRWMGHFENIR 504
Query: 546 NIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIK----RNGYVFSDGIGKITPDLAMEV 601
+++KCAARMGQ FSS+ T EV +V+ +PDI+ + Y+FSDGIGKI+ A V
Sbjct: 505 SVSKCAARMGQLFSSSRQTFEVLRWDVEV-IPDIEITTDGSKYIFSDGIGKISLRFAKRV 563
Query: 602 AQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWT 661
A + LD P A+QIRY G KGV+A P I +SLR SM KF+S L I SW+
Sbjct: 564 AHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSS--IDLSLRPSMKKFESESRMLNITSWS 621
Query: 662 RFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNT 721
+ QP ++NR+II+LLSTL + DE+F +MQ + + +ML + +VA VL + T
Sbjct: 622 KSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSVLGKLGGSETKT 681
Query: 722 AAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQ 781
A ML G+ P +EP+L +L + +L +R + +I VP GR L+GCLDE GVLE GQ
Sbjct: 682 AVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGCLDETGVLEYGQ 741
Query: 782 CFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHH 841
+I++++ S + + K + G V I KNPCLHPGDIR+LEA+ P+L
Sbjct: 742 VYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDLVG 801
Query: 842 LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR 901
+ DCLVFPQ+G+RPH NE SG DLDGDLYF+TWD+ LIP +K PM+Y A + +
Sbjct: 802 MVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIP--EKVDTPMDYTATRPRIMDH 859
Query: 902 PVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961
V +I + F +M+N++LG I AH++HAD S A C+ LA L + AVDF KTG
Sbjct: 860 VVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTG 919
Query: 962 KIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQS----KDAYDEDISVSSEVDIN 1017
MP L+P+ YPDFM + Y SN +LG+LYR + + + D SS +
Sbjct: 920 APAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPS 979
Query: 1018 PVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKY- 1076
P YD DLEVP S +F+ A Y+ +L L+ Y+ E+E++TG+I + Y
Sbjct: 980 PT---YDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYL 1036
Query: 1077 --NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTY 1134
++++ E+K+R+ + AL +E R L S E++A R ASAWY+VTY
Sbjct: 1037 KRDNKRYFEMKDRIVAAVDALHREARGWL--------LSSRKEEDA--SRMASAWYRVTY 1086
Query: 1135 HPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIK----IRCREMANIDTSKPVN 1187
HP D R SF WIA D L IK +R R + D++ V
Sbjct: 1087 HP------------DRRRGKRFWSFPWIACDNLLAIKASSQLRRRRQKDDDSTAVVQ 1131
>sp|Q0DXS3|RDR1_ORYSJ Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp.
japonica GN=RDR1 PE=2 SV=2
Length = 740
Score = 550 bits (1418), Expect = e-155, Method: Compositional matrix adjust.
Identities = 328/757 (43%), Positives = 443/757 (58%), Gaps = 46/757 (6%)
Query: 421 TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNS 480
+ Y PE+ +SNRV+R + + FLR++F+DE + + A LS A
Sbjct: 7 STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSAS-------GH 59
Query: 481 FSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMG 540
+ +T ++KRV S+LS G + G+ F FLAFSSSQLRD SAW F+ + DI+ WMG
Sbjct: 60 DANRTALYKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMG 119
Query: 541 RFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNG--YVFSDGIGKITPDL 597
F + +N+AK AAR+GQ FSS+ T++V EV+ E+ DIK NG +VFSDGIGKI+
Sbjct: 120 DFRNIRNVAKYAARLGQSFSSSTETLKVQKYEVE-EISDIK-NGTQHVFSDGIGKISSAF 177
Query: 598 AMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEI 657
A EVA K L P A+QIRY G KGVVA P ++SLR+SM KFQS + T+++
Sbjct: 178 ANEVAMKCNLK-RFAPSAFQIRYGGYKGVVAVDPTSR--WKLSLRKSMLKFQSDNITVDV 234
Query: 658 CSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLT-AACA 716
+++++QPGFLNRQ+ITLLSTL V D +F Q+ +++LN+M+ D A E +
Sbjct: 235 LAYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMG 294
Query: 717 EQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGV 776
E N +L G+ P EP+L +L RA++L L+ K+RI +P GR +MGCLDE
Sbjct: 295 EITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRT 354
Query: 777 LEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDH 836
L+ GQ FI+ + N RF T G VVIAKNPCLHPGDIRIL AVD
Sbjct: 355 LKYGQVFIRATSGVNDN------DRFTVT-------GKVVIAKNPCLHPGDIRILHAVDV 401
Query: 837 PELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEA 896
P LHH+++C+VFPQ+G RPH NE SGSDLDGD+YFV+WD +LIPP + PM+Y A
Sbjct: 402 PVLHHMFNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPP--RMVTPMDYTPAPT 459
Query: 897 KTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVD 956
+TL V ++ E+F ++VNE+LG I NAHVV AD + A CI LA+L + AVD
Sbjct: 460 ETLDHDVTIEEVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVD 519
Query: 957 FPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDI 1016
FPKTG +P L K YPDFM K +Y+S ++G+LYR+ K + EV
Sbjct: 520 FPKTGVPALIPPELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIKHFTREV-- 577
Query: 1017 NPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKY 1076
YDTD+ V D+I +A K YD +L L++ Y + E E+++G I M K
Sbjct: 578 --ARRSYDTDMIVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKN 635
Query: 1077 NSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHP 1136
++K RL + +LRKE R F +M D D A KASAWY VTYHP
Sbjct: 636 FTKKSDADAIRL--AVRSLRKEARSRFSEMSLDDNGHGHDASEA----KASAWYHVTYHP 689
Query: 1137 EWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIR 1173
E+ + E+ +SF W + L RIK R
Sbjct: 690 EFWGCYNEGYERPH-----FISFPWCIYEKLLRIKQR 721
>sp|O82504|RDR2_ARATH RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=3
SV=1
Length = 1133
Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust.
Identities = 393/1148 (34%), Positives = 580/1148 (50%), Gaps = 117/1148 (10%)
Query: 65 EVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPEN--PFRLNQ 122
E+ T D K A V F +RA + +++L L++S ++ P ++
Sbjct: 43 EIPTTRDNWKPRDFARVQFTTLEVKSRAQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDP 102
Query: 123 RGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFT--RDIAF 180
R R L D+ + +G S ++ F A ++ +DG + T R + F
Sbjct: 103 RKR------LDDIVLTVGFPESDEKRFCA-----------LEKWDGVRCWILTEKRRVEF 145
Query: 181 ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240
+ S + K E + E ++ ++ A LL+L P+V+ R + +
Sbjct: 146 WVWESGD--CYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPKVFKRVT---VHIA 200
Query: 241 VPFD-------MLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERR 293
F D D WIRTTDF+ S +IG + + + H G + + + G
Sbjct: 201 TKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEV---HNGS-TMLDIFSGLPY 256
Query: 294 VQVDSLSRPITIREEPDFE-----VPMSDPFFCIHYEEGISF--EIMFLVNAVMHKGIIN 346
+ D+LS +T + F VP+ + G+ F EI+F +NA++H I+
Sbjct: 257 YREDTLS--LTYVDGKTFASAAQIVPLLNAAIL-----GLEFPYEILFQLNALVHAQKIS 309
Query: 347 QHQLSD-SFFDLLRGQSREVNVAALKHIYSYKW----PVFDACKRLKLVQEWLLKDPELY 401
SD +LRG S E + LK ++ PVF +++ V + + P
Sbjct: 310 LFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPASA 369
Query: 402 KGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMN 461
+I+ +R +TP+K Y L PE+E +N V++ + + F+RVTF++E +
Sbjct: 370 YKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLP 429
Query: 462 ANVLS------YFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQ 515
AN LS YF+ P +T ++ RV SIL G + ++F FLAFS+SQ
Sbjct: 430 ANALSVNSKEGYFVKP-----------SRTNIYNRVLSILGEGITVGPKRFEFLAFSASQ 478
Query: 516 LRDCSAWFFSEDGKTSVLDIKKWMGRFTD-KNIAKCAARMGQCFSSTYATVEVPPTEVDP 574
LR S W F+ + K DI++WMG F ++I+KCAARMGQ FS++ T+ V +V+
Sbjct: 479 LRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVE- 537
Query: 575 ELPDIKRNG----YVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACW 630
++PDI+ Y FSDGIGKI+ A +VAQK L + P A+QIRY G KGV+A
Sbjct: 538 QIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL--SHVPSAFQIRYGGYKGVIAV- 594
Query: 631 PAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQ 690
+ ++SLR+SM KF S++ L + WT P FLNR+II LLSTL + D MF +MQ
Sbjct: 595 -DRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQ 653
Query: 691 DSMLSKLNQMLVDSDVAFEVLTAACAEQG-NTAAIMLSAGFNPQTEPHLRGMLTCIRAAQ 749
LS L ML D D A VL E N ML G+ P +EP+L ML +Q
Sbjct: 654 AVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQ 713
Query: 750 LWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET-KKL 808
L L+ + RI VP GR L+GC+DE+G+LE GQ +++V+ S+ S F + ++
Sbjct: 714 LSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLT-KAELKSRDQSYFRKIDEET 772
Query: 809 QVIKGFVVIAKNPCLHPGDIRILEAV--DHPELHHLYDCLVFPQKGDRPHTNEASGSDLD 866
V+ G VV+ KNPCLHPGDIR+L+A+ H E DC++FPQKG+RPH NE SG DLD
Sbjct: 773 SVVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLD 832
Query: 867 GDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICN 926
GD +FV+WDE +IP PPM+Y + + + V +I +FF +M+++ LG I
Sbjct: 833 GDQFFVSWDEKIIPSEMD--PPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVIST 890
Query: 927 AHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQS 986
AH+VHAD A + C+ LA L + AVDF KTG MP LKP+ +PDF+ + +
Sbjct: 891 AHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPT 950
Query: 987 YKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSY 1046
Y S + G+LYR K + + + D + YD LE FI A + Y
Sbjct: 951 YISESVFGKLYRAVKSSLAQRKPEAESEDT----VAYDVTLEEAGFESFIETAKAHRDMY 1006
Query: 1047 DGQLNGLLEQYKVNREEELVTGHIWSMPKY---NSRKQGELKERLKHSYSALRKEFRQVF 1103
+L L+ Y EEE++TG + + Y ++R+ G++K+R+ S L KE F
Sbjct: 1007 GEKLTSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWF 1066
Query: 1104 EKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIA 1163
EK CE E +K L ASAWY VTY+P + L LSF WI
Sbjct: 1067 EK---SCE--DEQQKKKL----ASAWYYVTYNPNHRDEKL-----------TFLSFPWIV 1106
Query: 1164 NDYLARIK 1171
D L IK
Sbjct: 1107 GDVLLDIK 1114
>sp|O14227|RDR1_SCHPO RNA-dependent RNA polymerase 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rdr1 PE=1 SV=1
Length = 1215
Score = 340 bits (872), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 273/949 (28%), Positives = 451/949 (47%), Gaps = 80/949 (8%)
Query: 261 SGAIGRCNSYRISISSRHRGKLSKVITYLGE-RRVQVDSLSRPITIREEPDFEVPMSDPF 319
+ IGRCN +S S R + L + + S + PD++ S
Sbjct: 315 NAPIGRCNVLVLSFSIRDESDKDDIAFLLHNLEKFNLKSQLDKVVFHLVPDYKHRCS--- 371
Query: 320 FCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWP 379
+ ++ I EI +L+ A + K ++++ L +L + S+E L+ I + K
Sbjct: 372 --LINDKEIEEEIAYLLQACLSKNLLSEIDLPIILANL-KKLSKERAKKFLRLILTSKTA 428
Query: 380 VFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRK 439
+ + + L + ++ D + +++L +TPT + +E NRV+R
Sbjct: 429 LINPSE-LDFTKSFVFYDLSSASS-------IHIKKLYVTPTTLRIVEDSLEAGNRVIRN 480
Query: 440 YKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGF 499
+KD A+RF+RV DE + +R + + F + +++ R++ +L+ G
Sbjct: 481 FKDFANRFMRVQITDE------------YYKQKIRGGS-DGF-RNEKLYSRIQQLLTYGI 526
Query: 500 YLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKN-IAKCAARMGQCF 558
+ + + FLAF +SQLR+ A+FF+ + I++WMG F++ N ++K AARMGQCF
Sbjct: 527 KVGNQIYEFLAFGNSQLREHGAYFFASGSDLNAKQIREWMGDFSEINSVSKYAARMGQCF 586
Query: 559 SSTYATVEVPPTEVDPELPD-IKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPP---PC 614
S+T E+ VD L D I RN + F+DG+G + + V ++L L+V P
Sbjct: 587 STTK---EINRFCVDISLQDDIVRNNHCFTDGVGMAS----LSVIRRLSLEVKNHDMFPS 639
Query: 615 AYQIRYAGCKGVVACWPAKG----DGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNR 670
A+Q R G KGV++ P G + R S +KF+S H+TLE+ +RF LN
Sbjct: 640 AFQFRMGGYKGVLSLAPPTKLEYHQGNLVFPRRSQDKFKSFHSTLEVIKISRFSNAHLNM 699
Query: 671 QIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAI--MLSA 728
Q+ITLL L V +F + S LSK+N+ + + +L E +T I + A
Sbjct: 700 QLITLLEGLGVEKTVFLELTRSQLSKMNESINSKQKSILMLRDNVDEYHSTLIIADFIQA 759
Query: 729 GFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEG--GQCFIQV 786
GF + + +L L ++EK ++ VP G +L+G DE G L+G + V
Sbjct: 760 GFLERDDAFTENLLNLYYEWVLRLIKEKQKVSVPKGAYLLGVADETGTLKGHYDDAVLSV 819
Query: 787 SEPFL--GNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD 844
E F+ + + GS K +VI G ++A+NP LHPGD+R+ +AV EL HL +
Sbjct: 820 PEIFIQITDTSTSFGSYSTGKLKTRVIVGLCIVARNPSLHPGDVRVCKAVRCDELMHLKN 879
Query: 845 CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI------PPSKKSWPPMEYNAAEAKT 898
+VFP GDR SG DLDGD Y V WD+ L+ PP +S P + E K
Sbjct: 880 VIVFPTTGDRSIPAMCSGGDLDGDEYTVIWDQRLLPKIVNYPPLLESSPKKSIDFLEGKP 939
Query: 899 LTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHA---DHSEYGALDENCILLAELAATAV 955
L V EFF ++ ++LG I NA A D++ G C+ LAE+ + AV
Sbjct: 940 LIDSVK-----EFFVNYIKYDSLGLISNAWKAWAHDHDNNPEGIFGNVCLELAEMHSKAV 994
Query: 956 DFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVD 1015
DF K+G M A PK YPDFM K +S++S +G+++R + E
Sbjct: 995 DFAKSGVACKMQAKYHPKRYPDFMQKTKTRSFRSETAVGKIFRYAARFQRES---GRPAT 1051
Query: 1016 INPV-DIHYDTDLEVPE-SVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHI-WS 1072
NP+ + YD +++P +++ A K YD L ++ ++ ++ E E+ T I +
Sbjct: 1052 YNPIMNTVYDPCMKLPRFKTEYLNVAEEVKKHYDNDLRSIMARFDISTEYEVYTAFILFK 1111
Query: 1073 MPKYNSRKQGELKERLKHSYSALRKEFRQVF-EKMD-SDCELLSEDEKNALFERKASAWY 1130
+ + L+E + + L+K++ Q + EK S+ E +A Y
Sbjct: 1112 DDLAKTVNEYGLREEVSFQFDLLKKKYTQEYLEKCALSNQSAFDSSEYEERINSAVAATY 1171
Query: 1131 QVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMAN 1179
VTY ++ + + VL+SF ++ + L ++ + AN
Sbjct: 1172 DVTYDQR-------VKSVGNGTTEVLISFPYLFSSRLCQLSRKAMLTAN 1213
>sp|O82188|RDR5_ARATH Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana
GN=RDR5 PE=2 SV=2
Length = 977
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 119/484 (24%), Positives = 199/484 (41%), Gaps = 78/484 (16%)
Query: 585 VFSDGIGKITPDLA------------MEVAQKLKLDVNPPPCAYQIR--YAG-------- 622
+ SDG G I+ DLA + + PP Q R Y G
Sbjct: 397 IHSDGTGYISEDLARMCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFL 456
Query: 623 -----CKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLS 677
C V P+ I++S S++ F + + + + + L++ ++ LLS
Sbjct: 457 LNKKLCPRTVQVRPSM---IKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLS 513
Query: 678 TLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPH 737
+P+E F + + L + + + A AA M+ G P EPH
Sbjct: 514 YGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAAQMILVGI-PLDEPH 572
Query: 738 LRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVL-EGGQCFIQVSEPFLGNCFS 796
L+ L+ + + L+ ++ V +LMG +D G L E C I S
Sbjct: 573 LKNYLSILLKTEKNDLKA-GKLPVTESYYLMGTVDPTGALKEDEVCVILESGQ------- 624
Query: 797 KHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD----CLVFPQKG 852
I G V++ +NP LH GDI IL+A L + FPQKG
Sbjct: 625 --------------ISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKG 670
Query: 853 DRPHTNEASGSDLDGDLYFVTWDENLIPPSKKS--W----PPMEYNAAEAKTLTRPVDQR 906
R +E +G D DGD+YF++ + L+ K S W PP + N+ A + P +
Sbjct: 671 PRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELE 730
Query: 907 DIIE-------FFAKHMVN---ENLGTICNAHVVHADH--SEYGALDENCILLAELAATA 954
+ + F A +++ ++ TI + ++ D E + + + L ++ A
Sbjct: 731 EELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDA 790
Query: 955 VDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEV 1014
+D PK G V +P LKP ++P +M ++ + ++S ILG ++ K E+ S SSE+
Sbjct: 791 LDAPKKGDKVYLPNKLKPDIFPHYMERD--KKFQSTSILGLIFDFVKSQTTEEPSPSSEI 848
Query: 1015 DINP 1018
P
Sbjct: 849 SKLP 852
>sp|Q5QMN5|RDR3_ORYSJ Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa subsp.
japonica GN=RDR3 PE=2 SV=2
Length = 1153
Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 101/402 (25%), Positives = 179/402 (44%), Gaps = 52/402 (12%)
Query: 642 RESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
++S++ QS ++ + + R + +R +ITLL VP+E F + S +
Sbjct: 652 KKSLSGVQSVNSFEIVSTSNRPRRTLTSRFLITLLCYGGVPEEYFLELLQSAIEGAENAC 711
Query: 702 VDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761
D + A + + + + +A M+ +G P E +L+ L + + G+++ +I +
Sbjct: 712 YDYEDALRIAFSYADMEDSMSARMILSGI-PLEESYLQHRLDFMAQQERKGIKQ-GKIPI 769
Query: 762 PAGRWLMGCLDELGVLEGGQ-CFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKN 820
+LM D G L + C I + F G+ V++ K+
Sbjct: 770 DECYYLMDTTDPTGTLRPNEVCVILENGQFSGD---------------------VLVYKH 808
Query: 821 PCLHPGDIRILEAVDHPELHHLYD-----CLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 875
P LH GDI +L+A +L Y ++FP G R +E + SD DGD+Y+V+ +
Sbjct: 809 PGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIYWVSKN 868
Query: 876 ENLIPPSKKSWPPMEYNAAEAKTLTRPVD------QRDIIEFFAKHMVNEN--LGTICNA 927
L+ K S P ++ + +P D +R + F K + LGT ++
Sbjct: 869 PKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPSFALGTAADS 928
Query: 928 HVVHADHSEYGALDE--------NCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFM 979
+ + D +LDE + L +L A+D PKTG V +P+ L K YP FM
Sbjct: 929 WLAYMDRLLTDSLDEIEKKLIEEKMLKLVDLYYLALDAPKTGNKVNIPSDLMVKQYPHFM 988
Query: 980 GKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDI 1021
G+ SY S+ ILG++Y ++ ED+ ++ P+ +
Sbjct: 989 GRSF--SYHSSSILGQIYDKA-----EDVESLRSCNVQPIGV 1023
>sp|Q5QMN4|RDR4_ORYSJ Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa subsp.
japonica GN=RDR4 PE=2 SV=2
Length = 1183
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 93/381 (24%), Positives = 162/381 (42%), Gaps = 44/381 (11%)
Query: 642 RESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701
++S++ QS ++ + + R F + +I LL VP+E F + + + + +
Sbjct: 673 KKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNAR 732
Query: 702 VDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761
D A + + + A M+ +G P E +L+ L + + G++ +I +
Sbjct: 733 FDYAGALNIAFNYADMEDSMPARMILSGI-PLEESYLQSRLDFLSLLERKGIK-NGKIPI 790
Query: 762 PAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNP 821
+LMG D G L + + + +G + G V++ K P
Sbjct: 791 DDCYYLMGTADPTGKLGPNEVCVILD----------YGQ----------VSGDVLVYKYP 830
Query: 822 CLHPGDIRILEAVDHPELHHLYD----CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEN 877
LHPGDI +L+A ++ + ++FP G R +E + SD DGD+Y+V+ +
Sbjct: 831 GLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPK 890
Query: 878 LI---PPSKKSWPPMEYNAAEAK--------TLTRPVDQRDIIEFFAKHMVNENLGT--- 923
L+ PSK P + N + K L R + + FA T
Sbjct: 891 LLEHFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWL 950
Query: 924 --ICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGK 981
+ V D SE +++ + L +L A+D PK G V +P L K YP FM +
Sbjct: 951 VYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDR 1010
Query: 982 EAYQSYKSNKILGRLYRQSKD 1002
SY S+ ILG++Y ++ D
Sbjct: 1011 SP--SYHSSSILGKIYDKAGD 1029
>sp|O82190|RDR3_ARATH Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis thaliana
GN=RDR3 PE=3 SV=2
Length = 992
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 98/419 (23%), Positives = 180/419 (42%), Gaps = 54/419 (12%)
Query: 668 LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLS 727
L+R ++ LLS VP++ F ++ + L + + AF+ +Q I++
Sbjct: 517 LSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYTADMILVG 576
Query: 728 AGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVS 787
P EP+L+ L+ + + L+ R + ++MG +D G L+ +
Sbjct: 577 I---PLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKENEI----- 627
Query: 788 EPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD--- 844
C H + I G V++ +NP LH GDI +L+A L
Sbjct: 628 ------CVILHSGQ---------ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAK 672
Query: 845 -CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLI-------PPSKKSWPPMEYNAAEA 896
+ FPQKG R +E +G D DGD+YF++ + L+ P S P Y +
Sbjct: 673 FAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKP 732
Query: 897 KTLTRPVDQRDIIEFFAK---------HMVNENLGTICNAHVVHADHS--EYGALDENCI 945
L+ + ++ + F K M + I + + D S E +N +
Sbjct: 733 SELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNIL 792
Query: 946 LLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYD 1005
L ++ A+D PK G V +P L+ K +P +M ++ + ++S ILG ++ + D+++
Sbjct: 793 KLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIF-DTVDSHN 851
Query: 1006 EDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLN-GLLEQYKVNREE 1063
+ SE+ + Y D VP+S +W + +Y +++ ++E KV R +
Sbjct: 852 AEEPPPSEIS----KLWYFEDEPVPKSHMDKFTSWYE--NYRSEMSQAMMETDKVKRNQ 904
>sp|O82189|RDR4_ARATH Probable RNA-dependent RNA polymerase 4 OS=Arabidopsis thaliana
GN=RDR4 PE=3 SV=2
Length = 927
Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 115/475 (24%), Positives = 200/475 (42%), Gaps = 92/475 (19%)
Query: 579 IKRNGY--VFSDGIGKITPDLA------------MEVAQKLKLDVNPPPCAYQIRY---- 620
+ +NG + SDG G I+ DLA M V PP QIR
Sbjct: 393 LDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTCVQEPPLLIQIRMFNDG 452
Query: 621 AGCKGVVAC---WPAKGDGIRMSL-----RESMNKFQSHHTTLEICSWTRFQPGFLNRQI 672
+ KG+ P + +R S+ ++++ F + ++ + + + L++ +
Sbjct: 453 SAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAKLSKNL 512
Query: 673 ITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTA--ACAEQGN----TAAIML 726
+ LLS VP++ F + LN + + F+V A A GN A M+
Sbjct: 513 VALLSYGGVPNDFFLDIL------LNTLEKKKTIFFKVRAAGKAALHYGNMDDKNALQMI 566
Query: 727 SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQV 786
AG P EP+L+ L+ + + L+ ++ + +LMG +D G L+ +
Sbjct: 567 MAGI-PLDEPYLKHYLSKLLKLEKDDLK-AGKLPIDESYYLMGTVDPTGELKEDEV---- 620
Query: 787 SEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD-- 844
S A+++ V++ +NP LH GDI IL+A L
Sbjct: 621 -------------SGLAKSQD-------VLVYRNPGLHFGDIHILKATYVKSLEQYVGNS 660
Query: 845 --CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPME-------YNAAE 895
+ FPQKG R +E +G D DGD+YF++ + L+ K S P + Y +
Sbjct: 661 KYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQ 720
Query: 896 AKTLTRPVDQRDIIEFFAKHMVNEN--LGTICNAHVVHADHSEYGAL-DENC-------- 944
L+ + ++ + F K + + +G ++ + D + L DEN
Sbjct: 721 PSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMD--RFLTLGDENVKEKAEMKK 778
Query: 945 --ILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLY 997
+ L ++ A+D PKTG V +P +K L+P +M E +++KS ILG ++
Sbjct: 779 KMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYM--ERNKTFKSTSILGLIF 831
>sp|P13830|RESA_PLAFF Ring-infected erythrocyte surface antigen OS=Plasmodium falciparum
(isolate FC27 / Papua New Guinea) GN=RESA PE=2 SV=1
Length = 1073
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 20/121 (16%)
Query: 1077 NSRKQGELKERLKHSYSALRKEF---RQVFEKMDSDCELLSEDEKNALFERKASA---WY 1130
N RK LKE+L+ +YS + ++ ++ +E + C L + L ER S WY
Sbjct: 203 NKRKYDSLKEKLQKTYSQYKVQYDMPKEAYESKWTQCIKLIDQGGENLEERLNSQFKNWY 262
Query: 1131 QVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTS--KPVNY 1188
+ Y L+L+E R VL AW A +I+ CR++ N D S K +N
Sbjct: 263 RQKY--------LNLEE--YRRLTVLNQIAWKA--LSNQIQYSCRKIMNSDISSFKHINE 310
Query: 1189 L 1189
L
Sbjct: 311 L 311
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,955,878
Number of Sequences: 539616
Number of extensions: 19277517
Number of successful extensions: 42277
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 42171
Number of HSP's gapped (non-prelim): 30
length of query: 1197
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1068
effective length of database: 121,958,995
effective search space: 130252206660
effective search space used: 130252206660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)