Query 041430
Match_columns 1197
No_of_seqs 314 out of 512
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 11:34:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041430.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041430hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j7n_A RNA-dependent RNA polym 100.0 4E-121 1E-125 1142.6 36.3 543 421-995 131-776 (1022)
2 2lxi_A RNA-binding protein 10; 98.8 3.2E-09 1.1E-13 98.5 6.9 78 12-112 1-79 (91)
3 4fxv_A ELAV-like protein 1; RN 98.8 1.4E-08 4.7E-13 95.8 10.0 78 11-112 18-95 (99)
4 3s7r_A Heterogeneous nuclear r 98.8 1.6E-08 5.5E-13 92.0 9.9 82 6-112 5-86 (87)
5 3md1_A Nuclear and cytoplasmic 98.8 3.4E-08 1.2E-12 88.8 10.6 78 12-113 1-78 (83)
6 3ucg_A Polyadenylate-binding p 98.8 2.6E-08 8.9E-13 90.8 9.8 79 9-112 3-81 (89)
7 1s79_A Lupus LA protein; RRM, 98.8 2.2E-08 7.4E-13 95.3 9.5 80 7-112 6-85 (103)
8 3bs9_A Nucleolysin TIA-1 isofo 98.7 4E-08 1.4E-12 89.1 9.7 79 11-113 5-83 (87)
9 1whw_A Hypothetical protein ri 98.7 6E-08 2.1E-12 90.3 10.8 85 9-117 5-89 (99)
10 2cqc_A Arginine/serine-rich sp 98.7 8.1E-08 2.8E-12 88.5 11.3 80 9-112 12-91 (95)
11 2x1f_A MRNA 3'-END-processing 98.7 5.9E-08 2E-12 90.1 10.1 82 12-117 2-83 (96)
12 2jwn_A Embryonic polyadenylate 98.7 6E-08 2E-12 94.2 10.6 81 11-116 35-115 (124)
13 1x4h_A RNA-binding protein 28; 98.7 7.6E-08 2.6E-12 91.4 11.1 84 9-114 12-99 (111)
14 1uaw_A Mouse-musashi-1; RNP-ty 98.7 1.5E-08 5E-13 89.9 5.7 75 13-112 1-75 (77)
15 2dgs_A DAZ-associated protein 98.7 9.3E-08 3.2E-12 89.1 11.2 81 9-114 7-87 (99)
16 2cqd_A RNA-binding region cont 98.7 8.3E-08 2.8E-12 92.2 11.1 85 5-114 10-94 (116)
17 1x5u_A Splicing factor 3B subu 98.7 8.7E-08 3E-12 90.2 10.6 84 8-115 11-94 (105)
18 2dng_A Eukaryotic translation 98.7 9E-08 3.1E-12 90.0 10.6 81 9-115 12-92 (103)
19 2cqg_A TDP-43, TAR DNA-binding 98.7 1.5E-07 5.2E-12 88.3 12.0 79 10-114 13-91 (103)
20 2dh8_A DAZ-associated protein 98.7 6E-08 2E-12 91.5 9.2 80 9-113 13-92 (105)
21 2dnz_A Probable RNA-binding pr 98.7 8.7E-08 3E-12 88.4 10.1 81 11-115 4-84 (95)
22 2lkz_A RNA-binding protein 5; 98.7 2.8E-08 9.5E-13 93.4 6.7 81 10-112 7-91 (95)
23 4f25_A Polyadenylate-binding p 98.7 7.2E-08 2.5E-12 93.0 9.8 77 12-114 5-81 (115)
24 3mdf_A Peptidyl-prolyl CIS-tra 98.6 7.9E-08 2.7E-12 86.8 9.5 79 10-112 5-83 (85)
25 2mss_A Protein (musashi1); RNA 98.6 2.5E-08 8.7E-13 88.1 6.0 74 14-112 1-74 (75)
26 2dnm_A SRP46 splicing factor; 98.6 8.1E-08 2.8E-12 90.2 9.6 81 11-115 12-92 (103)
27 2cq4_A RNA binding motif prote 98.6 8E-08 2.7E-12 92.1 9.7 79 9-112 22-100 (114)
28 1iqt_A AUF1, heterogeneous nuc 98.6 2.2E-08 7.6E-13 88.4 5.3 74 14-112 1-74 (75)
29 3s8s_A Histone-lysine N-methyl 98.6 1.3E-07 4.4E-12 91.0 10.7 82 11-116 5-86 (110)
30 2e5h_A Zinc finger CCHC-type a 98.6 1.4E-07 4.6E-12 87.0 10.4 79 10-112 14-92 (94)
31 2rs2_A Musashi-1, RNA-binding 98.6 1E-07 3.5E-12 91.2 9.8 78 11-113 24-101 (109)
32 1p27_B RNA-binding protein 8A; 98.6 1.3E-07 4.6E-12 89.1 10.3 81 9-113 20-100 (106)
33 2dhg_A TRNA selenocysteine ass 98.6 1.4E-07 4.7E-12 88.7 10.2 82 11-115 8-89 (104)
34 2dgv_A HnRNP M, heterogeneous 98.6 1.3E-07 4.5E-12 86.7 9.8 79 9-113 5-83 (92)
35 4a8x_A RNA-binding protein wit 98.6 8.6E-08 3E-12 86.9 8.4 78 11-112 3-81 (88)
36 2ywk_A Putative RNA-binding pr 98.6 1.8E-07 6.1E-12 86.3 10.6 79 9-112 13-91 (95)
37 1oo0_B CG8781-PA, drosophila Y 98.6 1.6E-07 5.6E-12 89.2 10.6 82 8-113 22-103 (110)
38 2cq0_A Eukaryotic translation 98.6 1.7E-07 5.7E-12 88.1 10.4 82 10-115 13-94 (103)
39 3p5t_L Cleavage and polyadenyl 98.6 4E-08 1.4E-12 90.4 6.0 77 13-113 2-80 (90)
40 2cq3_A RNA-binding protein 9; 98.6 3.2E-07 1.1E-11 86.2 12.2 86 6-117 9-94 (103)
41 2dgo_A Cytotoxic granule-assoc 98.6 2.2E-07 7.6E-12 89.0 11.4 84 10-117 13-96 (115)
42 1x5t_A Splicing factor 3B subu 98.6 8.4E-08 2.9E-12 88.7 8.0 82 11-116 4-86 (96)
43 1wi8_A EIF-4B, eukaryotic tran 98.6 1.8E-07 6.2E-12 88.1 10.4 79 10-114 13-92 (104)
44 2do4_A Squamous cell carcinoma 98.6 1.8E-07 6.1E-12 87.4 10.3 80 9-113 14-93 (100)
45 1x4b_A Heterogeneous nuclear r 98.6 1.3E-07 4.3E-12 90.9 9.3 78 11-113 26-103 (116)
46 1x4a_A Splicing factor, argini 98.6 2.8E-07 9.6E-12 87.5 11.4 78 9-113 19-96 (109)
47 2cpf_A RNA binding motif prote 98.6 1.8E-07 6E-12 87.0 9.8 83 11-114 4-86 (98)
48 2cqb_A Peptidyl-prolyl CIS-tra 98.6 1.4E-07 4.9E-12 88.3 9.2 83 9-115 9-91 (102)
49 1x4e_A RNA binding motif, sing 98.6 6.5E-08 2.2E-12 87.5 6.6 78 11-112 4-81 (85)
50 1u6f_A Tcubp1, RNA-binding pro 98.6 2.9E-07 1E-11 91.1 11.8 86 8-117 38-123 (139)
51 3ns6_A Eukaryotic translation 98.6 1.1E-07 3.6E-12 89.6 8.2 78 11-112 5-89 (100)
52 2jrs_A RNA-binding protein 39; 98.6 1.9E-07 6.3E-12 89.3 9.9 81 9-113 23-103 (108)
53 2cqi_A Nucleolysin TIAR; RNA r 98.6 3.6E-07 1.2E-11 85.8 11.7 79 9-113 12-90 (103)
54 2d9p_A Polyadenylate-binding p 98.6 1.8E-07 6.1E-12 87.9 9.6 83 7-115 10-92 (103)
55 1x5s_A Cold-inducible RNA-bind 98.6 1.3E-07 4.3E-12 88.6 8.5 84 8-115 8-91 (102)
56 2nlw_A Eukaryotic translation 98.6 2.1E-07 7E-12 88.3 9.8 84 4-113 7-97 (105)
57 2cpe_A RNA-binding protein EWS 98.6 1.5E-07 5.2E-12 89.8 8.9 84 8-115 11-102 (113)
58 2xs2_A Deleted in azoospermia- 98.6 1.2E-07 4E-12 88.9 8.0 78 8-112 5-82 (102)
59 2err_A Ataxin-2-binding protei 98.6 1.5E-07 5E-12 90.0 8.8 83 5-113 22-104 (109)
60 2dnh_A Bruno-like 5, RNA bindi 98.6 3.1E-07 1.1E-11 86.4 10.9 83 10-116 13-97 (105)
61 2fy1_A RNA-binding motif prote 98.5 2.3E-07 8E-12 89.7 10.1 81 11-116 6-86 (116)
62 2la6_A RNA-binding protein FUS 98.5 1.3E-07 4.3E-12 88.4 7.9 79 10-112 11-97 (99)
63 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.5 3.1E-07 1.1E-11 90.6 11.0 80 9-112 60-139 (140)
64 2dgp_A Bruno-like 4, RNA bindi 98.5 1.6E-07 5.6E-12 88.5 8.5 85 7-114 8-94 (106)
65 1p1t_A Cleavage stimulation fa 98.5 1.2E-07 4E-12 89.0 7.4 81 10-114 6-86 (104)
66 2lmi_A GRSF-1, G-rich sequence 98.5 5.5E-08 1.9E-12 92.5 5.2 81 8-114 7-90 (107)
67 3r27_A HnRNP L, heterogeneous 98.5 3.5E-07 1.2E-11 87.0 10.6 74 11-112 20-93 (100)
68 2khc_A Testis-specific RNP-typ 98.5 2.1E-07 7.3E-12 89.5 9.4 79 10-112 38-116 (118)
69 2cpy_A RNA-binding protein 12; 98.5 1.2E-07 4E-12 91.3 7.5 80 9-114 12-92 (114)
70 2cpz_A CUG triplet repeat RNA- 98.5 2.6E-07 8.9E-12 88.6 9.7 80 11-114 24-103 (115)
71 1l3k_A Heterogeneous nuclear r 98.5 4.6E-07 1.6E-11 93.6 12.3 80 10-114 11-90 (196)
72 2dis_A Unnamed protein product 98.5 2.6E-07 8.8E-12 87.6 9.5 83 10-114 6-90 (109)
73 2j76_E EIF-4B, EIF4B, eukaryot 98.5 1.1E-07 3.8E-12 89.2 6.9 78 10-113 17-95 (100)
74 2div_A TRNA selenocysteine ass 98.5 2.6E-07 8.9E-12 86.0 9.2 80 9-112 6-90 (99)
75 2cph_A RNA binding motif prote 98.5 3.5E-07 1.2E-11 86.2 10.2 88 7-117 10-98 (107)
76 2krb_A Eukaryotic translation 98.5 1.7E-07 5.8E-12 84.3 7.5 73 13-111 2-81 (81)
77 3ulh_A THO complex subunit 4; 98.5 4.2E-07 1.4E-11 85.8 10.4 78 10-112 27-104 (107)
78 2do0_A HnRNP M, heterogeneous 98.5 8E-07 2.7E-11 84.8 12.2 80 10-114 13-92 (114)
79 1sjq_A Polypyrimidine tract-bi 98.5 3.8E-07 1.3E-11 87.5 9.8 79 11-117 15-93 (105)
80 2ki2_A SS-DNA binding protein 98.5 7E-08 2.4E-12 88.3 4.6 79 13-116 2-80 (90)
81 3ex7_B RNA-binding protein 8A; 98.5 3.2E-07 1.1E-11 89.3 9.4 82 8-113 18-99 (126)
82 2kn4_A Immunoglobulin G-bindin 98.5 4.7E-07 1.6E-11 91.4 10.9 81 10-114 68-148 (158)
83 2ek1_A RNA-binding protein 12; 98.5 1.2E-07 4.1E-12 87.5 5.9 79 10-112 13-91 (95)
84 2dnn_A RNA-binding protein 12; 98.5 2.4E-07 8.4E-12 89.1 8.1 78 11-115 15-92 (109)
85 2cq1_A PTB-like protein L; RRM 98.5 5.2E-07 1.8E-11 85.7 10.2 80 10-117 13-92 (101)
86 3n9u_C Cleavage and polyadenyl 98.5 4.1E-07 1.4E-11 92.9 10.1 79 11-113 54-134 (156)
87 2kxn_B Transformer-2 protein h 98.5 2.6E-07 9.1E-12 91.2 8.5 78 11-112 45-122 (129)
88 2dgw_A Probable RNA-binding pr 98.5 2.7E-07 9.1E-12 84.7 7.9 77 10-113 8-84 (91)
89 1wez_A HnRNP H', FTP-3, hetero 98.5 1.8E-07 6.1E-12 88.6 6.8 78 9-113 12-89 (102)
90 1wg5_A Heterogeneous nuclear r 98.5 3.6E-07 1.2E-11 86.4 8.9 82 10-117 13-95 (104)
91 2kt5_A RNA and export factor-b 98.5 4.5E-07 1.6E-11 88.2 9.8 83 10-117 33-115 (124)
92 2cpi_A CCR4-NOT transcription 98.5 4.4E-07 1.5E-11 86.9 9.2 87 7-114 10-99 (111)
93 1fjc_A Nucleolin RBD2, protein 98.5 4.1E-07 1.4E-11 84.1 8.8 81 4-113 8-88 (96)
94 1wex_A Hypothetical protein (r 98.4 5.9E-07 2E-11 85.7 9.7 80 10-117 13-92 (104)
95 3lqv_A PRE-mRNA branch site pr 98.4 5.4E-07 1.8E-11 86.3 9.4 75 11-112 7-81 (115)
96 2dgx_A KIAA0430 protein; RRM d 98.4 9.8E-07 3.4E-11 82.1 10.8 76 11-113 8-87 (96)
97 2db1_A Heterogeneous nuclear r 98.4 2.8E-07 9.6E-12 89.4 7.2 77 11-113 16-95 (118)
98 1h2v_Z 20 kDa nuclear CAP bind 98.4 7.1E-07 2.4E-11 90.2 10.4 79 11-113 38-116 (156)
99 2lea_A Serine/arginine-rich sp 98.4 2.7E-07 9.3E-12 91.8 7.1 80 11-114 46-125 (135)
100 1nu4_A U1A RNA binding domain; 98.4 2.7E-07 9.3E-12 85.4 6.6 80 11-117 7-90 (97)
101 2hgm_A HNRPF protein, heteroge 98.4 3.4E-07 1.2E-11 90.5 7.5 77 11-113 41-118 (126)
102 1fxl_A Paraneoplastic encephal 98.4 9.4E-07 3.2E-11 88.4 10.8 79 12-114 2-80 (167)
103 2ytc_A PRE-mRNA-splicing facto 98.4 9.8E-07 3.3E-11 79.6 9.8 76 8-112 8-83 (85)
104 2cqp_A RNA-binding protein 12; 98.4 2.4E-07 8.1E-12 86.1 5.8 80 10-113 13-92 (98)
105 2hgl_A HNRPF protein, heteroge 98.4 2.7E-07 9.3E-12 92.3 6.4 77 11-113 43-122 (136)
106 2e5g_A U6 snRNA-specific termi 98.4 1.9E-06 6.6E-11 79.6 11.2 80 8-117 4-83 (94)
107 2ad9_A Polypyrimidine tract-bi 98.4 5.1E-07 1.7E-11 88.5 7.6 81 9-117 28-108 (119)
108 2jvr_A Nucleolar protein 3; RN 98.4 6.5E-07 2.2E-11 86.5 8.0 76 11-114 27-103 (111)
109 1b7f_A Protein (SXL-lethal pro 98.4 9.9E-07 3.4E-11 88.7 9.7 78 12-113 3-80 (168)
110 2e5j_A Methenyltetrahydrofolat 98.4 7.6E-07 2.6E-11 82.8 8.1 76 8-112 15-90 (97)
111 2cjk_A Nuclear polyadenylated 98.3 8.5E-07 2.9E-11 89.2 8.9 75 12-112 3-77 (167)
112 1rk8_A CG8781-PA, CG8781-PA pr 98.3 1.2E-06 4E-11 89.7 10.1 82 10-115 70-151 (165)
113 2hzc_A Splicing factor U2AF 65 98.3 1.3E-06 4.4E-11 79.1 9.2 71 11-111 5-85 (87)
114 3md3_A Nuclear and cytoplasmic 98.3 1.2E-06 4.1E-11 87.6 9.6 76 13-113 1-76 (166)
115 4f02_A Polyadenylate-binding p 98.3 1.5E-06 5.2E-11 92.2 10.9 81 11-115 14-94 (213)
116 2hvz_A Splicing factor, argini 98.3 7.3E-07 2.5E-11 83.4 7.4 75 13-116 1-75 (101)
117 3d2w_A TAR DNA-binding protein 98.3 1.3E-06 4.5E-11 80.6 8.8 74 8-112 7-80 (89)
118 2dnq_A RNA-binding protein 4B; 98.3 2.1E-06 7.3E-11 78.5 10.1 74 9-114 5-78 (90)
119 3md3_A Nuclear and cytoplasmic 98.3 2.4E-06 8.1E-11 85.4 11.2 81 9-113 84-164 (166)
120 1x4d_A Matrin 3; structural ge 98.3 8.3E-07 2.8E-11 84.6 7.1 76 11-114 14-90 (102)
121 2j8a_A Histone-lysine N-methyl 98.3 1E-06 3.6E-11 87.2 7.9 83 12-116 2-96 (136)
122 1l3k_A Heterogeneous nuclear r 98.3 1.5E-06 5.2E-11 89.7 9.7 78 11-113 103-180 (196)
123 1fj7_A Nucleolin RBD1, protein 98.3 4E-07 1.4E-11 85.1 4.8 77 11-113 16-92 (101)
124 2fc9_A NCL protein; structure 98.3 2.6E-06 8.8E-11 79.6 10.2 77 9-113 12-88 (101)
125 2g4b_A Splicing factor U2AF 65 98.3 1.6E-06 5.6E-11 87.5 9.6 79 11-113 93-171 (172)
126 1x5o_A RNA binding motif, sing 98.3 1.8E-06 6E-11 82.5 8.9 66 9-97 22-87 (114)
127 2dha_A FLJ20171 protein; RRM d 98.3 5.3E-07 1.8E-11 88.7 5.3 78 11-113 22-102 (123)
128 2voo_A Lupus LA protein; RNA-b 98.3 1.9E-06 6.5E-11 90.8 9.9 77 10-112 107-183 (193)
129 2fc8_A NCL protein; structure 98.3 1.4E-06 4.9E-11 81.4 8.0 79 8-113 11-89 (102)
130 1wel_A RNA-binding protein 12; 98.3 3.1E-07 1.1E-11 89.5 3.4 78 11-113 24-101 (124)
131 2qfj_A FBP-interacting repress 98.3 1.9E-06 6.6E-11 90.3 9.7 78 11-112 27-104 (216)
132 2qfj_A FBP-interacting repress 98.3 2.5E-06 8.6E-11 89.4 10.5 80 11-114 124-203 (216)
133 2dgu_A Heterogeneous nuclear r 98.3 5E-06 1.7E-10 78.1 11.5 79 6-116 5-83 (103)
134 2cjk_A Nuclear polyadenylated 98.3 1.1E-06 3.9E-11 88.3 7.5 77 11-112 86-162 (167)
135 2cpx_A Hypothetical protein FL 98.3 1.8E-06 6.2E-11 82.5 8.5 78 11-116 24-105 (115)
136 1wg1_A KIAA1579 protein, homol 98.3 1.1E-06 3.6E-11 80.5 6.5 77 11-118 4-80 (88)
137 2m2b_A RNA-binding protein 10; 98.3 6.8E-07 2.3E-11 88.1 5.5 83 8-113 19-105 (131)
138 2dnl_A Cytoplasmic polyadenyla 98.3 1.1E-06 3.6E-11 84.6 6.7 78 10-111 6-83 (114)
139 3q2s_C Cleavage and polyadenyl 98.2 1.8E-06 6.1E-11 93.5 9.0 79 11-113 67-147 (229)
140 1x4g_A Nucleolysin TIAR; struc 98.2 3.5E-06 1.2E-10 80.0 10.0 78 10-117 23-100 (109)
141 2a3j_A U1 small nuclear ribonu 98.2 2.6E-06 8.9E-11 84.2 9.3 80 11-117 28-111 (127)
142 1why_A Hypothetical protein ri 98.2 3.2E-06 1.1E-10 78.5 9.4 76 8-113 13-90 (97)
143 2hgn_A Heterogeneous nuclear r 98.2 4.2E-07 1.4E-11 91.3 3.6 80 10-116 44-123 (139)
144 2cqh_A IGF-II mRNA-binding pro 98.2 1.9E-06 6.6E-11 79.2 7.6 79 9-117 5-84 (93)
145 1x4f_A Matrin 3; structural ge 98.2 7E-07 2.4E-11 86.5 4.7 76 10-113 23-99 (112)
146 1x4c_A Splicing factor, argini 98.2 9.6E-06 3.3E-10 77.0 12.4 78 8-116 11-93 (108)
147 2la4_A Nuclear and cytoplasmic 98.2 3.1E-06 1.1E-10 79.0 8.8 72 11-112 26-97 (101)
148 2jvo_A Nucleolar protein 3; nu 98.2 3E-06 1E-10 81.0 8.8 76 7-114 26-101 (108)
149 1whx_A Hypothetical protein ri 98.2 2.8E-06 9.7E-11 81.4 8.6 82 8-119 6-87 (111)
150 3nmr_A Cugbp ELAV-like family 98.2 3.1E-06 1.1E-10 85.4 9.3 78 12-111 3-83 (175)
151 2f3j_A RNA and export factor b 98.2 1.9E-06 6.4E-11 89.8 7.8 81 11-116 87-167 (177)
152 2cpj_A Non-POU domain-containi 98.2 3.2E-06 1.1E-10 78.8 8.0 74 11-114 14-87 (99)
153 2xnq_A Nuclear polyadenylated 98.2 7.4E-06 2.5E-10 76.5 10.4 73 9-113 19-92 (97)
154 3nmr_A Cugbp ELAV-like family 98.2 4.6E-06 1.6E-10 84.1 9.7 79 10-112 93-173 (175)
155 2cpd_A Apobec-1 stimulating pr 98.2 1.1E-05 3.7E-10 75.2 11.4 72 11-113 14-86 (99)
156 2dgt_A RNA-binding protein 30; 98.2 6.3E-06 2.2E-10 75.7 9.7 75 8-114 6-80 (92)
157 2i2y_A Fusion protein consists 98.2 5.1E-06 1.7E-10 83.4 9.6 75 9-112 70-144 (150)
158 2yh0_A Splicing factor U2AF 65 98.1 7.2E-06 2.5E-10 84.7 10.8 79 10-112 112-190 (198)
159 1wf0_A TDP-43, TAR DNA-binding 98.1 3.4E-06 1.2E-10 76.9 7.2 72 11-113 4-75 (88)
160 2dnp_A RNA-binding protein 14; 98.1 8.4E-06 2.9E-10 74.6 9.6 74 9-114 6-79 (90)
161 2lcw_A RNA-binding protein FUS 97.4 3.2E-07 1.1E-11 88.2 0.0 79 11-113 6-92 (116)
162 1wf1_A RNA-binding protein RAL 98.1 7.2E-06 2.5E-10 77.9 9.2 72 10-113 25-97 (110)
163 1b7f_A Protein (SXL-lethal pro 98.1 7.2E-06 2.5E-10 82.3 9.4 79 10-112 87-167 (168)
164 3egn_A RNA-binding protein 40; 98.1 3.2E-06 1.1E-10 84.2 6.4 76 11-113 44-127 (143)
165 4f02_A Polyadenylate-binding p 98.1 6.7E-06 2.3E-10 87.2 9.2 77 11-113 102-178 (213)
166 2ghp_A U4/U6 snRNA-associated 98.1 7E-06 2.4E-10 90.6 9.3 78 9-113 38-115 (292)
167 1x5p_A Negative elongation fac 98.0 2.3E-05 8E-10 72.7 11.0 74 10-115 13-86 (97)
168 1fje_B Nucleolin RBD12, protei 98.0 1.4E-05 4.8E-10 81.1 10.1 76 9-113 96-171 (175)
169 3pgw_S U1-70K; protein-RNA com 98.0 8.5E-06 2.9E-10 96.3 9.6 80 11-114 101-180 (437)
170 1fxl_A Paraneoplastic encephal 98.0 1.5E-05 5E-10 79.7 9.7 78 10-111 86-165 (167)
171 2e44_A Insulin-like growth fac 98.0 1E-05 3.6E-10 74.6 7.9 78 10-115 13-91 (96)
172 2kvi_A Nuclear polyadenylated 98.0 6.2E-06 2.1E-10 76.6 6.2 73 10-114 8-81 (96)
173 2g4b_A Splicing factor U2AF 65 98.0 2.2E-05 7.5E-10 79.2 10.3 71 12-112 4-84 (172)
174 1fje_B Nucleolin RBD12, protei 98.0 4.5E-06 1.6E-10 84.8 4.8 81 8-114 9-89 (175)
175 3u1l_A PRE-mRNA-splicing facto 98.0 1.6E-05 5.6E-10 86.7 9.3 82 9-118 131-231 (240)
176 3smz_A Protein raver-1, ribonu 97.9 3.1E-05 1.1E-09 85.1 11.1 79 12-114 95-173 (284)
177 2adc_A Polypyrimidine tract-bi 97.9 3.3E-05 1.1E-09 82.8 10.9 78 10-116 32-110 (229)
178 2wbr_A GW182, gawky, LD47780P; 97.9 3E-05 1E-09 72.0 8.7 76 11-116 6-81 (89)
179 2yh0_A Splicing factor U2AF 65 97.9 3.1E-05 1.1E-09 79.9 9.5 73 11-113 3-85 (198)
180 3tyt_A Heterogeneous nuclear r 97.9 2.6E-05 9.1E-10 82.8 9.2 74 12-114 4-78 (205)
181 3pgw_A U1-A; protein-RNA compl 97.9 2.6E-05 8.7E-10 85.7 9.2 76 11-113 8-87 (282)
182 2ghp_A U4/U6 snRNA-associated 97.9 2.2E-05 7.6E-10 86.6 8.7 79 10-113 208-288 (292)
183 3beg_B Splicing factor, argini 97.9 2E-05 6.8E-10 75.9 7.1 71 10-111 14-89 (115)
184 1qm9_A Polypyrimidine tract-bi 97.8 1.9E-05 6.5E-10 82.0 7.2 78 11-117 2-80 (198)
185 1sjr_A Polypyrimidine tract-bi 97.8 5.9E-05 2E-09 77.7 9.9 76 11-113 45-121 (164)
186 2cq2_A Hypothetical protein LO 97.8 4.4E-05 1.5E-09 74.2 8.2 79 11-117 24-107 (114)
187 3smz_A Protein raver-1, ribonu 97.8 4.2E-05 1.5E-09 84.0 8.7 80 10-114 182-262 (284)
188 2pe8_A Splicing factor 45; RRM 97.8 0.00014 4.8E-09 69.3 11.1 85 10-117 6-95 (105)
189 3sde_A Paraspeckle component 1 97.8 4.8E-05 1.7E-09 83.2 8.8 79 12-113 96-176 (261)
190 3sde_A Paraspeckle component 1 97.7 8.3E-05 2.8E-09 81.3 9.5 73 10-112 20-92 (261)
191 1jmt_A Splicing factor U2AF 35 97.7 4.5E-05 1.6E-09 72.5 6.4 73 17-113 20-103 (104)
192 2bz2_A Negative elongation fac 97.6 7.3E-05 2.5E-09 72.9 7.0 73 11-115 38-110 (121)
193 1qm9_A Polypyrimidine tract-bi 97.6 8E-05 2.7E-09 77.3 6.9 72 12-112 120-193 (198)
194 2adc_A Polypyrimidine tract-bi 97.6 0.00015 5E-09 77.7 8.8 72 12-112 151-224 (229)
195 3pgw_A U1-A; protein-RNA compl 97.5 0.00017 5.9E-09 79.1 9.4 73 11-112 206-279 (282)
196 3zzy_A Polypyrimidine tract-bi 97.4 0.00074 2.5E-08 67.0 10.3 75 11-113 27-103 (130)
197 2e5i_A Heterogeneous nuclear r 97.4 0.00096 3.3E-08 65.7 11.0 72 12-112 25-98 (124)
198 2dit_A HIV TAT specific factor 97.3 0.0007 2.4E-08 64.6 9.5 78 8-113 11-99 (112)
199 3tyt_A Heterogeneous nuclear r 97.3 0.00024 8.1E-09 75.4 6.2 62 12-97 123-186 (205)
200 2diu_A KIAA0430 protein; struc 97.2 0.0011 3.8E-08 62.3 8.7 76 11-119 8-87 (96)
201 2d9o_A DNAJ (HSP40) homolog, s 97.1 0.0012 4E-08 62.5 8.5 72 12-114 10-88 (100)
202 3v4m_A Splicing factor U2AF 65 97.1 0.0014 4.9E-08 62.2 9.0 85 11-117 4-98 (105)
203 3ue2_A Poly(U)-binding-splicin 96.8 0.0027 9.3E-08 61.8 8.3 88 11-118 19-111 (118)
204 3tht_A Alkylated DNA repair pr 96.8 0.002 6.8E-08 73.9 8.2 65 9-101 15-81 (345)
205 1owx_A Lupus LA protein, SS-B, 96.0 0.011 3.9E-07 57.9 7.1 77 8-112 14-92 (121)
206 3s6e_A RNA-binding protein 39; 95.9 0.0082 2.8E-07 58.1 5.8 78 12-117 7-94 (114)
207 2dhx_A Poly (ADP-ribose) polym 95.5 0.041 1.4E-06 52.3 8.4 78 9-116 5-84 (104)
208 3dxb_A Thioredoxin N-terminall 94.0 0.05 1.7E-06 57.6 5.5 45 72-119 171-216 (222)
209 2dnr_A Synaptojanin-1; RRM dom 93.1 0.21 7.2E-06 46.5 7.3 55 27-114 30-84 (91)
210 1ufw_A Synaptojanin 2; RNP dom 91.9 0.23 8E-06 46.5 6.0 54 27-113 39-92 (95)
211 1wwh_A Nucleoporin 35, nucleop 82.6 5.7 0.0002 38.7 9.5 71 9-111 21-92 (119)
212 2l9w_A U4/U6 snRNA-associated- 76.9 6.3 0.00021 38.0 7.5 71 12-111 21-95 (117)
213 2kn4_A Immunoglobulin G-bindin 66.0 4.7 0.00016 39.8 4.3 24 73-96 10-33 (158)
214 3p3d_A Nucleoporin 53; structu 54.1 40 0.0014 33.4 8.2 79 13-111 8-94 (132)
215 1whv_A Poly(A)-specific ribonu 47.3 16 0.00056 34.4 4.1 63 4-96 7-69 (100)
216 3pq1_A Poly(A) RNA polymerase; 45.1 11 0.00036 44.9 3.1 58 11-96 52-109 (464)
217 3ctr_A Poly(A)-specific ribonu 43.3 17 0.00059 34.3 3.6 53 15-97 8-60 (101)
218 2j7n_A RNA-dependent RNA polym 31.6 1.1 3.6E-05 57.9 -8.7 37 485-523 226-262 (1022)
219 2w7a_A LINE-1 ORF1P; RNA-bindi 28.3 1.5E+02 0.005 28.0 7.3 82 13-111 4-98 (100)
220 4ayb_A DNA-directed RNA polyme 25.2 20 0.00068 45.9 1.1 52 810-873 411-465 (880)
221 2i2y_A Fusion protein consists 24.4 65 0.0022 31.3 4.5 40 73-114 10-49 (150)
222 2a6h_D DNA-directed RNA polyme 22.0 41 0.0014 45.0 3.1 52 810-873 694-748 (1524)
223 1twf_A B220, DNA-directed RNA 21.2 37 0.0013 46.4 2.5 53 809-873 435-490 (1733)
224 3lu0_D DNA-directed RNA polyme 20.5 70 0.0024 42.4 4.7 52 811-874 416-470 (1407)
No 1
>2j7n_A RNA-dependent RNA polymerase; RNAI response, RNA-directed RNA polymerase, hydrolase; 2.30A {Neurospora crassa} PDB: 2j7o_A
Probab=100.00 E-value=3.7e-121 Score=1142.60 Aligned_cols=543 Identities=24% Similarity=0.350 Sum_probs=442.5
Q ss_pred CeeEecCCcccccchhhccCCCCCCcEEEEEEecCCccccccccccccccccccccccccccchhhHHHHHHHHhhCC-e
Q 041430 421 TKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGG-F 499 (1197)
Q Consensus 421 tri~~~~P~~e~sNRvlR~f~~~~D~FLRV~F~DE~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~i~~rv~~~L~~G-i 499 (1197)
.++.|.+|++++|||++|+|| +||||||+|++++... ++..+..+. ....+++|.++|.+| +
T Consensus 131 ~~l~L~p~~l~~s~R~~RrfG--sDrFL~V~fp~~~~~~-------~~~~~~~~~--------~~~~~~~v~~~l~~~~~ 193 (1022)
T 2j7n_A 131 YLVKLKPLMFEQGCRLTRRFG--PDRFFEILIPSPTSTS-------PSVPPVVSK--------QPAAVEEVIQWLTMGQH 193 (1022)
T ss_dssp EEEEECCCEEEECBHHHHHHC--GGGEEEEEEECTTCCC-------SSSCTTSSS--------SSSCHHHHHHHHHSSCE
T ss_pred eEEEecCCccCCCceEEEeeC--CceeEEEEecCCcccc-------ccccchhcc--------chHHHHHHHHHHhcCcE
Confidence 589999999999999999999 9999999999886431 111122211 112478899999877 5
Q ss_pred EEeeEEEEEEEeec---------CCCC--------cCceEEEeCCC------------------------CCCHHHHHHH
Q 041430 500 YLCGRKFSFLAFSS---------SQLR--------DCSAWFFSEDG------------------------KTSVLDIKKW 538 (1197)
Q Consensus 500 ~I~gR~y~FLa~S~---------SqlR--------~~s~wFfa~~~------------------------~lt~~~Ir~w 538 (1197)
.++||+|+.+..-. .|+| .+.||||+++| .+|+++||+|
T Consensus 194 ~~~gr~~r~f~~~d~~~r~~~~~~~l~~~~~~~~~~~Rv~~f~~~G~~i~~~~f~fl~~s~lre~s~~~~~ls~~~ir~w 273 (1022)
T 2j7n_A 194 SLVGRQWRAFFAKDAGYRKPLREFQLRAEDPKPIIKERVHFFAETGITFRPDVFKTRSVVPAEEPVEQRTEFKVSQMLDW 273 (1022)
T ss_dssp EETTEEEEEEEEEECC--------------CCCCCEEEEEEEEEEETTCBCCCC-------------CCBCCCHHHHHHH
T ss_pred EEecceeEEEeeccccccccccccccccccccccccceEEEEeccCccccCccccccccccccccccccCCCCHHHHHHh
Confidence 68899988764421 2333 24688888543 2799999999
Q ss_pred hCCCC-C--CCHhHHHHHhhccCCCCccceeeCCCcccccCCCccC---CCcccccccccccHHHHHHHHHHcCCCCCCC
Q 041430 539 MGRFT-D--KNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKR---NGYVFSDGIGKITPDLAMEVAQKLKLDVNPP 612 (1197)
Q Consensus 539 mG~F~-~--~~~aK~aARigq~FSsT~~tv~v~~~~i~~~I~DI~~---~g~~FTDG~G~IS~~lA~~I~~~l~l~~~~~ 612 (1197)
||+|+ + +++||||||||||||+|.+++.+++++|...+|||++ |||+||||||+||++||++|++++++. ..
T Consensus 274 mg~f~~n~~q~~aK~aARigq~FS~T~~tv~v~~~~I~~~~dDI~~~~g~g~vFTDGvG~IS~~lA~~I~~~l~l~--~~ 351 (1022)
T 2j7n_A 274 LLQLDNNTWQPHLKLFSRIQLGLSKTYAIMTLEPHQIRHHKTDLLSPSGTGEVMNDGVGRMSRSVAKRIRDVLGLG--DV 351 (1022)
T ss_dssp HHCGGGCTTSBHHHHHHTTHHHHSBCEEEEECCGGGEEECSSCCBCTTSSCCBSSTTEEEECHHHHHHHHHHHTCS--SC
T ss_pred ccChhhcccchHHHHHHHhhhhhcCccCcEEechHHEEEcCCccccCCCCCCeecCCchHhhHHHHHHHHHHcCCC--CC
Confidence 99998 4 5699999999999999999999999999533589986 779999999999999999999999997 48
Q ss_pred CcEEEEeccCceeEEEecCCCC-CCceeEeccccccccc-----CCceEEEeeec-CCccccccHHHHHHHhcCCCChHH
Q 041430 613 PCAYQIRYAGCKGVVACWPAKG-DGIRMSLRESMNKFQS-----HHTTLEICSWT-RFQPGFLNRQIITLLSTLNVPDEM 685 (1197)
Q Consensus 613 PSAfQiR~gG~KGvL~vdp~~~-~g~~I~lR~Sm~KF~s-----~~~~LEI~~~S-~~~p~~LNRQlI~iL~~lGVp~ev 685 (1197)
|||||||||||||||+|||++. ++.+|+|||||.||++ .+++||||++| ++.|++||||+|+||+++||+.++
T Consensus 352 PSAfQiR~gGaKGvl~vdp~~~~~~~~I~lRpSm~KF~~~~~d~~~~~LEIv~~s~~~~~~~LNRQlI~lL~~lGV~~~~ 431 (1022)
T 2j7n_A 352 PSAVQGRFGSAKGMWVIDVDDTGDEDWIETYPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRARDKVK 431 (1022)
T ss_dssp CSEEEEEETTEEEEEEECTTCCSCCCCEEECTTTBCSCCCCCSGGGSEEEEEEECCCCCCCCBCTTTHHHHHHTBSSHHH
T ss_pred CcEEEEEeccceEEEEECcccCCCcceEEeCCcceeecCCCCCcccCeEEEEeecCCCCCceecHHHHHHHHhCCcCHHH
Confidence 9999999999999999999863 3356999999999986 46899999998 689999999999999999999999
Q ss_pred HHHHHHHH-HHHH-------HHhhCCHHHHHHHHHHhhc-------------------cccchHHHHHHCCCCCCCchHH
Q 041430 686 FWSMQDSM-LSKL-------NQMLVDSDVAFEVLTAACA-------------------EQGNTAAIMLSAGFNPQTEPHL 738 (1197)
Q Consensus 686 F~~lq~~~-l~~l-------~~~l~d~~~A~~~L~~~~~-------------------~~~~~~~~ml~~Gf~~~~ePfl 738 (1197)
|++++.++ .+.| ..++.++..+...+..... ...+++..|+.+||+|.++|||
T Consensus 432 f~~~i~~~~~~~L~~~l~~~~~al~~~~~~r~~l~~~~~~~~~r~~~g~~~~~~glp~s~~~~l~~Ll~aGf~p~~epfL 511 (1022)
T 2j7n_A 432 MRQAIGDRLINDLQRQFSEQKHALNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDSQEETLNFLMNSGFDPKKQKYL 511 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSCCHHHHHHHTSCCEETTEESSHHHHHHHHHHTTCCTTTBHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhccccccccccccchhhccCccchHHHHHHHHHcCCCccccHHH
Confidence 98865444 2333 3456666655555432110 0124567899999999999999
Q ss_pred HHHHHHHHHHHHHhhccceeeeccCceeEeeecCCCCCCCCCcEEEEecCCccccccccCCCccccccceeEEe-eeEEE
Q 041430 739 RGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKKLQVIK-GFVVI 817 (1197)
Q Consensus 739 ~~ll~~~~~~~L~~Lk~K~RI~Vp~s~~L~GV~DetG~L~~GEVfvq~s~~~~~~~~~~~g~~~~~~~~~~vi~-G~VlV 817 (1197)
+++++.++..+|+.||+|+||+||+|++||||+||||+|+||||||+++.... ++ .+...++. |+|+|
T Consensus 512 ~~~l~~~~~~~l~~LK~k~rI~V~~s~~L~GV~DetG~L~eGEVfv~~s~~~~------~~-----~~~~~~l~gg~VlV 580 (1022)
T 2j7n_A 512 QDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGFSSKFR------DE-----EESFTLLSDCDVLV 580 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHHCCBCCSSEEEEEEEECTTSCCCTTEEEEEEEEEEE------ET-----TEEEEEECSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhccccccceEEEEEecCCCccCCCeEEEEeccccc------cC-----CCCceeecCceEEE
Confidence 99999999999999999999999999999999999999999999999985321 00 11245565 69999
Q ss_pred EeCCCCCCCcceEEEEecCCCCCcCCCeEEeCCCCCCCcccccCCCCCCCCeEEEeecCCcCCCCCCCCCCCC-----CC
Q 041430 818 AKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPME-----YN 892 (1197)
Q Consensus 818 ~RnP~lHPGDIr~v~AVd~P~L~hL~dvIVFp~kG~Rplps~lSGGDLDGD~y~ViWD~~Lvp~~~~~~~P~~-----Y~ 892 (1197)
+|||||||||||+|+||++|+||||+|||||||+|+|||||||||||||||+|||||||+|||++.+...|.. |.
T Consensus 581 tRnP~lhPGDIrvv~AV~~PeL~hL~DvIVFp~kG~Rplps~lSGGDLDGD~Y~ViWD~~Lv~~f~na~~p~~p~~~~y~ 660 (1022)
T 2j7n_A 581 ARSPAHFPSDIQRVRAVFKPELHSLKDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCWDPEIVDGFVNAEMPLEPDLSRYL 660 (1022)
T ss_dssp ECSSCCSGGGEEEEEECCCGGGTTCCSEEEECSCSSSCHHHHTTTCCSSSCEEEEECCHHHHHTBCCCCCCCCCCCTTTS
T ss_pred EeCCCcCcCceeEEEeccChhhhccCCeEEccCCCCCCChhHhcCCCCCCCeEEEEechhhcccccCCCCCCCCchhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999998765333322 32
Q ss_pred hhhhc---cc------C---CCCChhH-HHHHHHHhhccchhHhHHHHHHHHhccccCCCCCHHHHHHHHHHHhccCCCC
Q 041430 893 AAEAK---TL------T---RPVDQRD-IIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPK 959 (1197)
Q Consensus 893 ~~~~~---~l------~---r~vt~~d-i~dffv~ym~~d~LG~Ian~Hl~~aD~~~~G~~d~~Cl~LA~L~S~AVDf~K 959 (1197)
+..+. ++ + ++++.+| +.+||+.||++|.||+|||+|+..+|. +.|+.|++|++||+|||+||||||
T Consensus 661 ~k~~~~~~~~~~~~~~g~~~~~~~~~d~i~~ff~~~m~~d~LG~is~~h~~~~~~-~~g~~~~~cl~LA~L~S~AVD~~K 739 (1022)
T 2j7n_A 661 KKDKTTFKQLMASHGTGSAAKEQTTYDMIQKSFHFALQPNFLGMCTNYKERLCYI-NNSVSNKPAIILSSLVGNLVDQSK 739 (1022)
T ss_dssp EECCCBHHHHHTTTCSSHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-HTCSSSHHHHHHHHHHHHHTTHHH
T ss_pred cccccchhhhhhccccccccCchhHHHHHHHHHHHhcCcchHHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhhCccc
Confidence 11111 11 0 1233444 456889999999999999999877765 689999999999999999999999
Q ss_pred CCCeeec--CCCCCCCCCCCCCCCcccCCcccCChhcH
Q 041430 960 TGKIVTM--PAHLKPKLYPDFMGKEAYQSYKSNKILGR 995 (1197)
Q Consensus 960 TG~~v~~--p~~l~pk~~PdFM~k~~~~~Y~S~kiLG~ 995 (1197)
||++|++ ++.|+|+.|||||+ .++++|+|++++|+
T Consensus 740 tG~pv~~~~~~~lr~~~~p~~m~-~~~p~Y~s~~~~g~ 776 (1022)
T 2j7n_A 740 QGIVFNEASWAQLRRELLGGALS-LPDPMYKSDSWLGR 776 (1022)
T ss_dssp HTEECCHHHHHHHHHHHSCCSSC-CCCCGGGSSSCCSS
T ss_pred cCcccChhhhhhhhHhhCCCCCC-CCCCccccCcccCC
Confidence 9999998 77899999999999 56689999765443
No 2
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.85 E-value=3.2e-09 Score=98.48 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=67.4
Q ss_pred ccEEEEeCCCccccHHHHHHHHHhccc-cEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 12 DAQVSFGGFDRNVKAAELVKYLENEVG-GVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 12 ~~~i~v~gf~~~~~a~~l~~~le~~~G-~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
+++|.|+|+|.+++.+||.++|+. .| .|..|+|..+ +.++++++||||+|.+.++|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~-~G~~v~~v~i~~d---------------------~~t~~~rg~aFV~F~~~~~A~ 58 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQS-HGVQAREVRLMRN---------------------KSSGQSRGFAFVEFSHLQDAT 58 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHH-HTCCCSBCCSSSC---------------------SSSCCCSSEEEEECSSHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-hCCEeEEEEEEec---------------------CCCCCcCceEEEEecCHHHHH
Confidence 478999999999999999999998 67 7887877665 446889999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeec
Q 041430 91 RAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
.|+.+.. +.+.++|+.|+|..
T Consensus 59 ~Ai~~~~-~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 59 RWMEANQ-HSLNILGQKVSMHY 79 (91)
T ss_dssp HHHHTTT-TEEEETTEEEEEEC
T ss_pred HHHHhcC-CCeEECCEEEEEEE
Confidence 9998643 36789999999984
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.81 E-value=1.4e-08 Score=95.82 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=68.6
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|+++|+. +|.|..|+|..+ +.++++++||||+|.+.++|.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d---------------------~~tg~~kG~afV~f~~~~~A~ 75 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRD---------------------KVAGHSLGYGFVNYVTAKDAE 75 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEC---------------------SSSCCEEEEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEeEeeec---------------------CCCCcccccEEEEECCHHHHH
Confidence 3578999999999999999999987 899999999886 445789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeec
Q 041430 91 RAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
.|+.... ...++|+.|+|..
T Consensus 76 ~Ai~~ln--g~~~~gr~l~V~~ 95 (99)
T 4fxv_A 76 RAINTLN--GLRLQSKTIKVSY 95 (99)
T ss_dssp HHHHHHT--TCEETTEECEEEE
T ss_pred HHHHHhC--CCEECCEEEEEEE
Confidence 9998653 3478999999984
No 4
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.80 E-value=1.6e-08 Score=92.02 Aligned_cols=82 Identities=18% Similarity=0.338 Sum_probs=69.8
Q ss_pred ccccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecC
Q 041430 6 REKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAM 85 (1197)
Q Consensus 6 ~~~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~ 85 (1197)
+..+.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +.+++++++|||+|.+
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~ 62 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTK-FGEVVDCTIKMD---------------------PNTGRSRGFGFILFKD 62 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTT-TSCEEEEEEEEC---------------------TTTCCEEEEEEEEESS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEeec---------------------CCCCccccEEEEEECC
Confidence 344567889999999999999999999976 899999999876 3457899999999999
Q ss_pred hHHHHHHHHhccCCceeecCeeeeeec
Q 041430 86 PTYVTRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 86 ~~~a~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
.++|..|+.+.+ -.++|+.|+|..
T Consensus 63 ~~~a~~A~~~~~---~~~~g~~i~v~~ 86 (87)
T 3s7r_A 63 AASVEKVLDQKE---HRLDGRVIDPKK 86 (87)
T ss_dssp THHHHHHHHSSC---EEETTEEEEEEE
T ss_pred HHHHHHHHHhCC---CEECCEEEEEEe
Confidence 999999997643 369999999873
No 5
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.76 E-value=3.4e-08 Score=88.77 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=68.0
Q ss_pred ccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHHH
Q 041430 12 DAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTR 91 (1197)
Q Consensus 12 ~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~~ 91 (1197)
+.+|+|+|+|..++.++|.++|+. .|.|..|++..+ +..++++++|||+|.++++|..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~---------------------~~~~~~~g~afV~f~~~~~a~~ 58 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWD---------------------MQTGSSRGYGFVSFTSQDDAQN 58 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTT-STTEEEEEEEEC---------------------TTTCCEEEEEEEEESCHHHHHH
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEc---------------------CCCCCccceEEEEECCHHHHHH
Confidence 468999999999999999999987 899999999876 3457899999999999999999
Q ss_pred HHHhccCCceeecCeeeeeecC
Q 041430 92 AVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 92 a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|+.... ...++|+.|+|..+
T Consensus 59 a~~~l~--g~~~~g~~l~v~~a 78 (83)
T 3md1_A 59 AMDSMQ--GQDLNGRPLRINWA 78 (83)
T ss_dssp HHHHHT--TCEETTEECEEEEC
T ss_pred HHHHhc--CCeeCCcEEEEEec
Confidence 999653 23689999999853
No 6
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.76 E-value=2.6e-08 Score=90.75 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=68.5
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
+.-.++|+|+|+|..++.++|+++|+. .|.|..|++..+ ..+++++++|||+|.+.++
T Consensus 3 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~ 60 (89)
T 3ucg_A 3 EADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCD---------------------KFSGHPKGFAYIEFSDKES 60 (89)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHGG-GCCEEEEEEEES---------------------CSSSSCCEEEEEEESSTHH
T ss_pred CCcCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEec---------------------CCCCCcceEEEEEECCHHH
Confidence 345689999999999999999999997 899999999876 3357899999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeec
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
|..|+.+- ...++|+.|+|..
T Consensus 61 a~~a~~~~---g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 61 VRTSLALD---ESLFRGRQIKVIP 81 (89)
T ss_dssp HHHHGGGT---TCEETTEECEEEE
T ss_pred HHHHHhcC---CCEECCcEEEEEE
Confidence 99999433 3468999999995
No 7
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=2.2e-08 Score=95.32 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=70.0
Q ss_pred cccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecCh
Q 041430 7 EKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMP 86 (1197)
Q Consensus 7 ~~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~ 86 (1197)
..+...+||+|+|+|..++.++|.++|+. .|.|..|+|..+ +. ++++++|||+|.+.
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~-~G~v~~v~i~~d---------------------~~-g~~rG~aFV~F~~~ 62 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRT---------------------LH-KAFKGSIFVVFDSI 62 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHT-SSCEEEEEEECC---------------------CT-TSCCCEEEEEESSH
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhh-cCCEEEEEEEEC---------------------CC-CCCccEEEEEECCH
Confidence 34556799999999999999999999997 899999999886 33 78999999999999
Q ss_pred HHHHHHHHhccCCceeecCeeeeeec
Q 041430 87 TYVTRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 87 ~~a~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
++|..|+.+- ...++|+.|+|..
T Consensus 63 e~a~~Ai~~~---~~~~~gr~l~V~~ 85 (103)
T 1s79_A 63 ESAKKFVETP---GQKYKETDLLILF 85 (103)
T ss_dssp HHHHHHHTSS---CCCCTTTTCEEEE
T ss_pred HHHHHHHHcC---CCEECCEEEEEEE
Confidence 9999999942 4578999999983
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.72 E-value=4e-08 Score=89.12 Aligned_cols=79 Identities=18% Similarity=0.263 Sum_probs=68.2
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|.++|+. .|.|..|++..+ +..++++++|||+|.+.++|.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~A~ 62 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAP-FGRISDARVVKD---------------------MATGKSKGYGFVSFFNKWDAE 62 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEec---------------------CCCCccceEEEEEECCHHHHH
Confidence 3579999999999999999999997 899999999875 335789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
.|+..... ..++|+.|+|..+
T Consensus 63 ~A~~~l~g--~~~~g~~l~v~~a 83 (87)
T 3bs9_A 63 NAIQQMGG--QWLGGRQIRTNWA 83 (87)
T ss_dssp HHHHHHTT--CEETTEECEEEEE
T ss_pred HHHHHcCC--CEECCeEEEEEec
Confidence 99996542 4789999999853
No 9
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.71 E-value=6e-08 Score=90.33 Aligned_cols=85 Identities=16% Similarity=0.174 Sum_probs=71.9
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..++++++|||+|.+.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~ 62 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSA-YGPLSELHYPID---------------------SLTKKPKGFAFVTFMFPEH 62 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCCC---------------------TTTCCCCSEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEec---------------------CCCCCcCeEEEEEECCHHH
Confidence 346789999999999999999999987 799999998875 3357899999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecCCCCC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
|..|+.... ...++|+.|+|..+...+
T Consensus 63 a~~A~~~l~--g~~~~g~~l~V~~a~~~~ 89 (99)
T 1whw_A 63 AVKAYAEVD--GQVFQGRMLHVLPSTIKK 89 (99)
T ss_dssp HHHHHHHTT--TEESSSCEEEEEECCCCS
T ss_pred HHHHHHHhC--CCEECCcEEEEEEcCCCc
Confidence 999997654 357899999999644443
No 10
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=8.1e-08 Score=88.52 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=70.4
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ +.+++++++|||+|.+.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~ 69 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYD---------------------QQSRRSRGFAFVYFENVDD 69 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHT-TSCEEEEEEEEC---------------------SSSSSEEEEEEEEESSHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEEc---------------------CCCCCcccEEEEEECCHHH
Confidence 346789999999999999999999988 899999999886 3457899999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeec
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
|..|+.... ...++|+.|+|..
T Consensus 70 A~~A~~~l~--g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 70 AKEAKERAN--GMELDGRRIRVSG 91 (95)
T ss_dssp HHHHHHHHT--TEEETTEEEEEEC
T ss_pred HHHHHHHhC--CCEECCEEEEEEe
Confidence 999999653 4578999999984
No 11
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.69 E-value=5.9e-08 Score=90.13 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=70.3
Q ss_pred ccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHHH
Q 041430 12 DAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTR 91 (1197)
Q Consensus 12 ~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~~ 91 (1197)
.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ ...++++++|||+|.+.++|..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~A~~ 59 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSN-VGPVINLKMMFD---------------------PQTGRSKGYAFIEFRDLESSAS 59 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBC---------------------TTTCCBCSEEEEEESSHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEeC---------------------CCCCccceEEEEEECCHHHHHH
Confidence 479999999999999999999997 799999999875 3357899999999999999999
Q ss_pred HHHhccCCceeecCeeeeeecCCCCC
Q 041430 92 AVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 92 a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
|+.... ...++|+.|+|..+...+
T Consensus 60 Ai~~l~--g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 60 AVRNLN--GYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp HHHHHT--TCEETTEECEEEECSCSS
T ss_pred HHHHhC--CCeECCeEEEEEEcCCCC
Confidence 998654 347899999999654443
No 12
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.69 E-value=6e-08 Score=94.20 Aligned_cols=81 Identities=23% Similarity=0.259 Sum_probs=69.7
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|.++|+. +|.|..|+|..+ +..+++++||||+|.+.++|.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~a~ 92 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSS-CGSINRITILCD---------------------KFSGHPKGYAYIEFAERNSVD 92 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHT-TSCEEEEEEEEE---------------------CTTSSCEEEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEec---------------------CCCCCcccEEEEEECCHHHHH
Confidence 5689999999999999999999997 899999999876 345789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCCCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGPEN 116 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~~~ 116 (1197)
.|+.+- ...++|+.|+|..+..+
T Consensus 93 ~A~~l~---g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 93 AAVAMD---ETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp HHHTTT---TCEETTEECEEEESSCC
T ss_pred HHHhcC---CCeECCeEEEEEECCCC
Confidence 999433 34789999999964433
No 13
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.69 E-value=7.6e-08 Score=91.41 Aligned_cols=84 Identities=24% Similarity=0.283 Sum_probs=72.2
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..+++++||||+|.+.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~ 69 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQ-FGDLKYVRVVLH---------------------PDTEHSKGCAFAQFMTQEA 69 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBC---------------------SSSCCBCSEEEEEESSHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEec---------------------CCCCCCccEEEEEECCHHH
Confidence 345789999999999999999999987 899999999876 3457899999999999999
Q ss_pred HHHHHHhccCC----ceeecCeeeeeecCC
Q 041430 89 VTRAVDAAGRT----ELFLNGRALKVSLGP 114 (1197)
Q Consensus 89 a~~a~~~a~~~----~l~~~~~~lkv~~~~ 114 (1197)
|..|+....+. ...++|+.|+|..+.
T Consensus 70 A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~ 99 (111)
T 1x4h_A 70 AQKCLAAASLEAEGGGLKLDGRQLKVDLAV 99 (111)
T ss_dssp HHHHHHHHCTTTTTCCEESSSCEEEEECCC
T ss_pred HHHHHHHhccccccCCcEEcCEEEEEEECC
Confidence 99999987532 568899999999543
No 14
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.69 E-value=1.5e-08 Score=89.87 Aligned_cols=75 Identities=16% Similarity=0.291 Sum_probs=66.8
Q ss_pred cEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHHHH
Q 041430 13 AQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRA 92 (1197)
Q Consensus 13 ~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a 92 (1197)
+||+|+|+|..++.++|+++|+. .|.|..|++..+ +..++++++|||+|.+.++|..|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~a~~a 58 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRD---------------------PLTKRSRGFGFVTFMDQAGVDKV 58 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTT-TSCCCCEEEECC---------------------CCSSSCSSEEEECCCCTTHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEecC---------------------CCCCCcCceEEEEEcCHHHHHHH
Confidence 57999999999999999999988 799999999875 33578999999999999999999
Q ss_pred HHhccCCceeecCeeeeeec
Q 041430 93 VDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 93 ~~~a~~~~l~~~~~~lkv~~ 112 (1197)
+...+ ..++|+.|+|..
T Consensus 59 ~~~~~---~~~~g~~l~v~~ 75 (77)
T 1uaw_A 59 LAQSR---HELDSKTIDPKV 75 (77)
T ss_dssp HHTTT---CCCSSCCCEEEE
T ss_pred HHhCC---CccCCEEEEEEe
Confidence 99875 588999999874
No 15
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=9.3e-08 Score=89.14 Aligned_cols=81 Identities=19% Similarity=0.246 Sum_probs=70.0
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..+++++||||+|.+.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~ 64 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKK-FGVVTEVVMIYD---------------------AEKQRPRGFGFITFEDEQS 64 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSS-SSCEEEEEECCC---------------------TTTCSCCSEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEeC---------------------CCCCCCCceEEEEECCHHH
Confidence 346789999999999999999999998 799999999875 3457899999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecCC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
|..|+.+- ...++|+.|+|..+.
T Consensus 65 a~~A~~~~---~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 65 VDQAVNMH---FHDIMGKKVEVKRAE 87 (99)
T ss_dssp HHHHHHHC---CCBSSSCBCEEEECC
T ss_pred HHHHHHhC---CCEECCeEEEEEECC
Confidence 99999842 347899999999543
No 16
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=8.3e-08 Score=92.21 Aligned_cols=85 Identities=25% Similarity=0.321 Sum_probs=73.6
Q ss_pred cccccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEec
Q 041430 5 GREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFA 84 (1197)
Q Consensus 5 ~~~~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~ 84 (1197)
.+..+.-.++|+|+|+|..++.++|+++|+. +|.|..|+|..+ ..++++++||||+|.
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~ 67 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEG-FGDIEEAVVITD---------------------RQTGKSRGYGFVTMA 67 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHT-TSCEEEEEESCC---------------------SSSCCCCSEEEEEES
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeeEEEEEEc---------------------CCCCccceEEEEEEC
Confidence 3445567899999999999999999999986 899999999875 345789999999999
Q ss_pred ChHHHHHHHHhccCCceeecCeeeeeecCC
Q 041430 85 MPTYVTRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 85 ~~~~a~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
+.++|..|+..... .++|+.|+|..+.
T Consensus 68 ~~~~a~~Ai~~~~~---~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 68 DRAAAERACKDPNP---IIDGRKANVNLAY 94 (116)
T ss_dssp SHHHHHHHHTCSSC---EETTEECEEEEST
T ss_pred CHHHHHHHHHhCCC---cCCCEEEEEEEcc
Confidence 99999999998753 7999999999653
No 17
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=8.7e-08 Score=90.20 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=71.5
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
...-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ ...+++++||||+|.+.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~ 68 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQ-AGPVVNTHMPKD---------------------RVTGQHQGYGFVEFLSEE 68 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCBC---------------------SSSCSBCSCEEEEESSHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEec---------------------CCCCcCCcEEEEEECCHH
Confidence 3446789999999999999999999998 799999998875 335789999999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeecCCC
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSLGPE 115 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~~~~ 115 (1197)
+|..|+.... ...++|+.|+|..+..
T Consensus 69 ~a~~A~~~l~--g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 69 DADYAIKIMD--MIKLYGKPIRVNKASA 94 (105)
T ss_dssp HHHHHHHHSS--SCBCSSCBCEEEETTT
T ss_pred HHHHHHHHhC--CCeECCeEEEEEECCC
Confidence 9999999654 3468999999995433
No 18
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.66 E-value=9e-08 Score=90.00 Aligned_cols=81 Identities=16% Similarity=0.233 Sum_probs=69.5
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..-.++|+|+|+|..++.++|+++|+.. | |..|+|..+ ..++++++||||+|.+.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~ 68 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDL-S-IRSVRLVRD---------------------KDTDKFKGFCYVEFDEVDS 68 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTS-C-EEEEEEEEC---------------------SSSCSEEEEEEEEESSHHH
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC-C-ceEEEEeec---------------------CCCCccceEEEEEECCHHH
Confidence 3457899999999999999999999997 8 999999986 4457899999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecCCC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLGPE 115 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~~~ 115 (1197)
|..|+.+- ...++|+.|+|..+..
T Consensus 69 a~~A~~l~---g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 69 LKEALTYD---GALLGDRSLRVDIAEG 92 (103)
T ss_dssp HHHHGGGT---TCEETTEECEEEECCC
T ss_pred HHHHHhhC---CCeECCeEEEEEEecC
Confidence 99999433 4588999999995433
No 19
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=1.5e-07 Score=88.32 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=69.3
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ +.++++++||||+|.+.++|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~a 70 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFST-FGEVLMVQVKKD---------------------LKTGHSKGFGFVRFTEYETQ 70 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEEEC---------------------SSSCSEEEEEEEEESSHHHH
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHh-cCCeEEEEEEec---------------------CCCCCccceEEEEECCHHHH
Confidence 35689999999999999999999987 899999999886 44578999999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecCC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
..|+.. ...++|+.|+|..+.
T Consensus 71 ~~A~~~----~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 71 VKVMSQ----RHMIDGRWCDCKLPN 91 (103)
T ss_dssp HHHHHS----CEEETTEEEEEECCC
T ss_pred HHHHHc----CCeeCCeEEEEEecC
Confidence 999983 248999999999543
No 20
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=6e-08 Score=91.45 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=71.0
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..+++++||||+|.++++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~ 70 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQ-YGEVVDCVIMKD---------------------KTTNQSRGFGFVKFKDPNC 70 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHT-TSCEEEEEEEEC---------------------SSSCCEEEEEEEEESSTTH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC---------------------CCCCCcceEEEEEECCHHH
Confidence 346789999999999999999999988 899999999886 3457899999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|..|+.. +...++|+.|+|..+
T Consensus 71 a~~a~~~---~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 71 VGTVLAS---RPHTLDGRNIDPKPC 92 (105)
T ss_dssp HHHHHHH---CSEEETTEEEBCCCS
T ss_pred HHHHHHh---CCCeECCEEEEEEEc
Confidence 9999998 357899999999953
No 21
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=8.7e-08 Score=88.42 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=69.7
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|+++|+. .|.|..|++..+ +..++++++|||+|.+.++|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~a~ 61 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEP-FGKIDNIVLMKD---------------------SDTGRSKGYGFITFSDSECAR 61 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEECC---------------------SSSCCCCSEEEEEESCHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEeec---------------------CCCCceeeEEEEEECCHHHHH
Confidence 3579999999999999999999987 899999999876 345789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGPE 115 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~~ 115 (1197)
.|+.... ...++|+.|+|..+..
T Consensus 62 ~A~~~l~--g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 62 RALEQLN--GFELAGRPMRVGHVTE 84 (95)
T ss_dssp HHHHHHT--TCCSSSSCCEEEESSC
T ss_pred HHHHHhC--CCeeCCcEEEEEEccc
Confidence 9999653 3478999999996433
No 22
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.65 E-value=2.8e-08 Score=93.39 Aligned_cols=81 Identities=12% Similarity=0.171 Sum_probs=67.1
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhcccc--EEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGG--VWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~--v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
..-.||.|+|+|..+|.++|.++|+. .|. |..|+|..+ +.++++++||||+|.+.+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~-~G~i~v~~v~i~~d---------------------~~tg~srG~aFV~f~~~~ 64 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSP-YASLAVNNIRLIKD---------------------KQTQQNRGFAFVQLSSAM 64 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTT-TCCCCGGGEECCCC---------------------SSSSSCSSEEEEECSSSH
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHh-hCCccEEEEEEEec---------------------CCCCCCceEeEEEECCHH
Confidence 34578999999999999999999997 674 455666554 446889999999999999
Q ss_pred HHHHHHHhccCC--ceeecCeeeeeec
Q 041430 88 YVTRAVDAAGRT--ELFLNGRALKVSL 112 (1197)
Q Consensus 88 ~a~~a~~~a~~~--~l~~~~~~lkv~~ 112 (1197)
+|..|+...... .+.++|+.|+|+.
T Consensus 65 ~A~~Ai~~lng~~~~~~i~Gr~i~V~~ 91 (95)
T 2lkz_A 65 DASQLLQILQSLHPPLKIDGKTIGVDF 91 (95)
T ss_dssp HHHHHHHHHHSSSSCEEETTEEEEEEE
T ss_pred HHHHHHHHhcCCCCCceECCEEEEEEE
Confidence 999999976532 4789999999985
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.65 E-value=7.2e-08 Score=93.00 Aligned_cols=77 Identities=18% Similarity=0.346 Sum_probs=67.0
Q ss_pred ccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHHH
Q 041430 12 DAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTR 91 (1197)
Q Consensus 12 ~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~~ 91 (1197)
.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ ..++++||||+|.+.++|..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~-~G~v~~v~i~~d-----------------------~~~~kg~afV~f~~~~~A~~ 60 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCD-----------------------ENGSKGYGFVHFETQEAAER 60 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEE-----------------------TTEEEEEEEEEESCHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhc-cCCEEEEEEeec-----------------------CCCCCceEEEEECCHHHHHH
Confidence 578999999999999999999987 899999999876 24588999999999999999
Q ss_pred HHHhccCCceeecCeeeeeecCC
Q 041430 92 AVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 92 a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
|+.... ...++|+.|+|....
T Consensus 61 Ai~~l~--~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 61 AIEKMN--GMLLNDRKVFVGRFK 81 (115)
T ss_dssp HHHHHT--TCEETTEECEEEESS
T ss_pred HHHHcC--CCEECCEEEEEEECC
Confidence 998653 347899999998543
No 24
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.65 E-value=7.9e-08 Score=86.77 Aligned_cols=79 Identities=24% Similarity=0.323 Sum_probs=68.2
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-.++|+|+|+|..++.++|+++|+. .|.|..|++..+ +..++++++|||+|.++++|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~a 62 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLD---------------------YETEKHRGFAFVEFELAEDA 62 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCEE---------------------TTTTEECSEEEEEESSHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhc-cCCEEEEEEEEC---------------------CCCCccccEEEEEECCHHHH
Confidence 35789999999999999999999987 899999998765 34578899999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeec
Q 041430 90 TRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
..|+.... ...++|+.|+|..
T Consensus 63 ~~A~~~l~--g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 63 AAAIDNMN--ESELFGRTIRVNL 83 (85)
T ss_dssp HHHHHHHT--TCEETTEECEEEE
T ss_pred HHHHHHhC--CCEECCcEEEEEE
Confidence 99997553 3368999999984
No 25
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.65 E-value=2.5e-08 Score=88.13 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=64.0
Q ss_pred EEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHHHHH
Q 041430 14 QVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAV 93 (1197)
Q Consensus 14 ~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~ 93 (1197)
+|+|+|+|..++.++|+++|+. .|.|..|++..+ +..++++++|||+|.+.++|..|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~a~~a~ 58 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQ-FGKVDDAMLMFD---------------------KTTNRHRGFGFVTFESEDIVEKVC 58 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHT-TSCCSEECCCBC---------------------SSSTTSCBEEEEECSCHHHHHHHH
T ss_pred CEEEecCCCCCCHHHHHHHHHh-cCCEEEEEEEec---------------------CCCCCcCcEEEEEECCHHHHHHHH
Confidence 4899999999999999999998 799998888765 335789999999999999999999
Q ss_pred HhccCCceeecCeeeeeec
Q 041430 94 DAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 94 ~~a~~~~l~~~~~~lkv~~ 112 (1197)
.+- ...++|+.|+|..
T Consensus 59 ~~~---~~~~~g~~l~v~~ 74 (75)
T 2mss_A 59 EIH---FHEINNKMVECKK 74 (75)
T ss_dssp SSS---CCCSSSCCCEEEC
T ss_pred HCC---CCEECCEEEEEEe
Confidence 853 4478999999873
No 26
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=8.1e-08 Score=90.22 Aligned_cols=81 Identities=19% Similarity=0.169 Sum_probs=69.9
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +.+++++++|||+|.+.++|.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~A~ 69 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEK-YGRVGDVYIPRE---------------------PHTKAPRGFAFVRFHDRRDAQ 69 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCBC---------------------SSSCSBCSCEEEEESSSSHHH
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeC---------------------CCCCCCCeEEEEEECCHHHHH
Confidence 5689999999999999999999997 799999999876 345789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGPE 115 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~~ 115 (1197)
.|+..... ..++|+.|+|..+..
T Consensus 70 ~A~~~l~g--~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 70 DAEAAMDG--AELDGRELRVQVARY 92 (103)
T ss_dssp HHHHHHSS--CCBTTBCCEEEECSS
T ss_pred HHHHHcCC--CEECCcEEEEEECCc
Confidence 99996432 368999999996443
No 27
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=8e-08 Score=92.05 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=68.6
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
+...++|+|+|+|..++.++|+++|+. +|.|..|+|..+ +.++++++||||+|.+.++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~ 79 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSA-VGKVRDVRIISD---------------------RNSRRSKGIAYVEFCEIQS 79 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCS---------------------CCSSSCCCCEEEEESCGGG
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEeEEEEEec---------------------CCCCccCcEEEEEeCcHHH
Confidence 346789999999999999999999987 899999999876 3457899999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeec
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
|..|+.+- ...++|+.|+|..
T Consensus 80 a~~A~~l~---g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 80 VPLAIGLT---GQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHHHHT---TEEETTEEEEEEE
T ss_pred HHHHHHcC---CCEeCCeEEEEEe
Confidence 99999333 4578999999984
No 28
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.64 E-value=2.2e-08 Score=88.39 Aligned_cols=74 Identities=14% Similarity=0.246 Sum_probs=64.3
Q ss_pred EEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHHHHH
Q 041430 14 QVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAV 93 (1197)
Q Consensus 14 ~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~ 93 (1197)
||+|+|+|..++.++|+++|+. .|.|..|++..+ +..++++++|||+|.++++|..|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~a~~Ai 58 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGG-FGEVESIELPMD---------------------NKTNKRRGFCFITFKEEEPVKKIM 58 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHH-HSCCSEECCCCS---------------------CCCSSSCCCEEEECSSSHHHHHHH
T ss_pred CEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEec---------------------CCCCCcCCEEEEEECCHHHHHHHH
Confidence 6899999999999999999998 799988888765 335789999999999999999999
Q ss_pred HhccCCceeecCeeeeeec
Q 041430 94 DAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 94 ~~a~~~~l~~~~~~lkv~~ 112 (1197)
.+- ...++|+.|+|..
T Consensus 59 ~~~---~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 59 EKK---YHNVGLSKCEIKV 74 (75)
T ss_dssp TTS---SCCBTTBCCCEEE
T ss_pred HhC---CCeECCEEEEEEE
Confidence 963 3468999999873
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.62 E-value=1.3e-07 Score=90.99 Aligned_cols=82 Identities=17% Similarity=0.112 Sum_probs=71.6
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +.++++++||||+|.+.++|.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~-~G~i~~v~i~~d---------------------~~tg~~rG~aFV~f~~~~~A~ 62 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRK-YGEVEEVEILLH---------------------PRTRKHLGLARVLFTSTRGAK 62 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEEC---------------------CCCCceeeEEEEEECCHHHHH
Confidence 4679999999999999999999987 899999999986 446889999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCCCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGPEN 116 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~~~ 116 (1197)
.|+..... -.++|+.|+|..+...
T Consensus 63 ~Ai~~lng--~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 63 ETVKNLHL--TSVMGNIIHAQLDIKG 86 (110)
T ss_dssp HHHHHHTT--CEETTEECEEEECSTT
T ss_pred HHHHHhCC--CEECCeEEEEEECCCC
Confidence 99986542 3789999999975544
No 30
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=1.4e-07 Score=86.97 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=68.9
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +.+++++++|||+|.++++|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~A 71 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSK-YGKVVKVTIMKD---------------------KDTRKSKGVAFILFLDKDSA 71 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTT-TSCEEEEEECCC---------------------SSSCCCTTCEEEEESCHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeC---------------------CCCCCcccEEEEEECCHHHH
Confidence 45689999999999999999999987 899999999875 34578899999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeec
Q 041430 90 TRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
..|+.... ...++|+.|+|..
T Consensus 72 ~~A~~~l~--g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 72 QNCTRAIN--NKQLFGRVIKASI 92 (94)
T ss_dssp HHHHHHTT--TEEETTEEEEEEE
T ss_pred HHHHHHcC--CCeeCCcEEEEEe
Confidence 99998654 4578999999974
No 31
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.62 E-value=1e-07 Score=91.18 Aligned_cols=78 Identities=15% Similarity=0.279 Sum_probs=68.6
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|.++|+. +|.|..|+|..+ ..++++++||||+|.+.++|.
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~---------------------~~tg~~kg~afV~f~~~~~A~ 81 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRD---------------------PLTKRSRGFGFVTFMDQAGVD 81 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCC---------------------TTTCCCTTCEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHc-cCCeEEEEEEEC---------------------CCCCCcCcEEEEEECCHHHHH
Confidence 5689999999999999999999987 899999999876 345789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
.|+...+ ..++|+.|+|..+
T Consensus 82 ~Ai~~~~---~~l~g~~l~V~~a 101 (109)
T 2rs2_A 82 KVLAQSR---HELDSKTIDPKVA 101 (109)
T ss_dssp HHHHSSC---EEETTEEEEEEEC
T ss_pred HHHHHCC---CcCCCEEEEEEEc
Confidence 9999753 6899999999953
No 32
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=1.3e-07 Score=89.05 Aligned_cols=81 Identities=10% Similarity=0.102 Sum_probs=69.8
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ ..+++++++|||+|.+.++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~ 77 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLD---------------------RRTGYLKGYTLVEYETYKE 77 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------TTTSSEEEEEEEEESCHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhc-cCCeEEEEEEec---------------------CCCCceeeEEEEEECCHHH
Confidence 345689999999999999999999988 799999999886 3457899999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|..|+.... ...++|+.|+|..+
T Consensus 78 a~~A~~~l~--g~~~~g~~l~V~~a 100 (106)
T 1p27_B 78 AQAAMEGLN--GQDLMGQPISVDWC 100 (106)
T ss_dssp HHHHHHHHT--TCBSSSSBCEEEES
T ss_pred HHHHHHHhc--CCEECCcEEEEEee
Confidence 999998643 23788999999853
No 33
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=1.4e-07 Score=88.69 Aligned_cols=82 Identities=12% Similarity=0.148 Sum_probs=70.6
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|.++|+...|.|..|+|..+ . .+++++||||+|.+.++|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~---------------------~-~g~~~g~afV~f~~~~~a~ 65 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD---------------------Q-TGVSKGYGFVKFTDELEQK 65 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEEC---------------------T-TCCEEEEEEEEESCHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEEC---------------------C-CCCccceEEEEECCHHHHH
Confidence 56899999999999999999999998999999999886 2 5779999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGPE 115 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~~ 115 (1197)
.|+..... ...++|+.|+|..+..
T Consensus 66 ~A~~~l~g-~~~~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 66 RALTECQG-AVGLGSKPVRLSVAIP 89 (104)
T ss_dssp HHHHHTTT-CCSSSSSCCCCCBCCC
T ss_pred HHHHHccC-CcccCCEeEEEEEccC
Confidence 99996543 2238999999996533
No 34
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.61 E-value=1.3e-07 Score=86.70 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=68.7
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ .++++++|||+|.+.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~~~i~~~-----------------------~g~~~g~afV~f~~~~~ 60 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNE-CGHVLYADIKME-----------------------NGKSKGCGVVKFESPEV 60 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHT-TSCEEEEEEEES-----------------------SSCEEEEEEEEESSHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcc-----------------------CCCcceEEEEEECCHHH
Confidence 345689999999999999999999998 899999999864 46799999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|..|+.... ...++|+.|+|..+
T Consensus 61 a~~a~~~l~--g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 61 AERACRMMN--GMKLSGREIDVRID 83 (92)
T ss_dssp HHHHHHHHT--TCCBTTBCCCCEEC
T ss_pred HHHHHHHhC--CCEECCcEEEEEEc
Confidence 999999654 24689999999953
No 35
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.60 E-value=8.6e-08 Score=86.95 Aligned_cols=78 Identities=15% Similarity=0.261 Sum_probs=66.9
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCC-ccceEEEEecChHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEK-VEPHAFVHFAMPTYV 89 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~V~F~~~~~a 89 (1197)
..++|+|+|+|..++.++|.++|+. .|.|..|+|..+ ...++ ++++|||+|.++++|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~---------------------~~~~~~~~g~afV~f~~~~~a 60 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVE---------------------RMHPHLSKGYAYVEFENPDEA 60 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEE---------------------TTEEEEECSEEEEEESSHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEeC---------------------CCCCCCCCcEEEEEEecHHHH
Confidence 4589999999999999999999987 899999999876 22233 899999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeec
Q 041430 90 TRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
..|+.... ...++|+.|+|+.
T Consensus 61 ~~A~~~l~--g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 61 EKALKHMD--GGQIDGQEITATA 81 (88)
T ss_dssp HHHHHHHT--TCEETTEECEEEE
T ss_pred HHHHHHcC--CCeECCeEEEEEE
Confidence 99999643 3478999999994
No 36
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.60 E-value=1.8e-07 Score=86.33 Aligned_cols=79 Identities=23% Similarity=0.289 Sum_probs=68.7
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
+...++|+|+|+|..++.++|+++|+. .|.|..|+|..+ + .++++++|||+|.++++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~-~G~i~~v~i~~~---------------------~-~g~~~g~afV~f~~~~~ 69 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQ-AGPLTKVTICKD---------------------R-EGKPKSFGFVCFKHPES 69 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------T-TSCEEEEEEEEESSTHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEEC---------------------C-CCCCceEEEEEECCHHH
Confidence 346789999999999999999999988 899999999886 2 36789999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeec
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
|..|+..... ..++|+.|+|..
T Consensus 70 a~~A~~~l~g--~~~~g~~l~V~~ 91 (95)
T 2ywk_A 70 VSYAIALLNG--IRLYGRPINVSG 91 (95)
T ss_dssp HHHHHHHHTT--CEETTEECEEEC
T ss_pred HHHHHHHhCC--CEECCCEEEEEE
Confidence 9999996542 368999999984
No 37
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.60 E-value=1.6e-07 Score=89.19 Aligned_cols=82 Identities=11% Similarity=0.095 Sum_probs=69.9
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
...-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ ...++++++|||+|.+.+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~ 79 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLD---------------------RRTGFSKGYALVEYETHK 79 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEECCBC---------------------TTTSSBCSEEEEEESSHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEec---------------------CCCCCcceEEEEEECCHH
Confidence 3446789999999999999999999988 799999998765 345789999999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeecC
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
+|..|+.... ...++|+.|+|..+
T Consensus 80 ~A~~Ai~~l~--g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 80 QALAAKEALN--GAEIMGQTIQVDWC 103 (110)
T ss_dssp HHHHHHHHHT--TCEETTEECEEEES
T ss_pred HHHHHHHHcC--CCEECCcEEEEEEc
Confidence 9999998543 24789999999853
No 38
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=1.7e-07 Score=88.08 Aligned_cols=82 Identities=15% Similarity=0.215 Sum_probs=70.9
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..+++++||||+|.+.++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~A 70 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRP-FGSISRIYLAKD---------------------KTTGQSKGFAFISFHRREDA 70 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTT-TCCEEEEEEEEC---------------------SSSCSEEEEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeec---------------------CCCCceeeEEEEEECCHHHH
Confidence 36799999999999999999999987 799999999876 33578999999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecCCC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLGPE 115 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~~~ 115 (1197)
..|+.... ...++|+.|+|..+..
T Consensus 71 ~~A~~~l~--g~~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 71 ARAIAGVS--GFGYDHLILNVEWAKP 94 (103)
T ss_dssp HHHHHHTT--TCEETTEECEEEESSC
T ss_pred HHHHHHcC--CCeeCCcEEEEEECCC
Confidence 99999654 3478999999995433
No 39
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.60 E-value=4e-08 Score=90.38 Aligned_cols=77 Identities=12% Similarity=0.163 Sum_probs=64.8
Q ss_pred cEEEEeCCCccccHHHHHHHHHhccc--cEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 13 AQVSFGGFDRNVKAAELVKYLENEVG--GVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 13 ~~i~v~gf~~~~~a~~l~~~le~~~G--~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
.+|+|+|+|..++.++|.++|+. .| .|..|+|..+ +.++++++||||+|.+.++|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~~~---------------------~~~g~~kG~afV~f~~~~~a~ 59 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFEN---------------------RANGQSKGFALVGVGSEASSK 59 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHT-TTCCCCCCEEEEEC---------------------TTTCCEEEEEEECC-CHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHH-hCCCceEEEEEEec---------------------CCCCccCcEEEEEECCHHHHH
Confidence 47999999999999999999987 89 8999999876 446789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
.|+..... ..++|+.|+|..+
T Consensus 60 ~Ai~~l~g--~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 60 KLMDLLPK--RELHGQNPVVTPS 80 (90)
T ss_dssp HHHHHGGG--SCSSSCCCEECCC
T ss_pred HHHHHcCC--CeeCCEEEEEEEC
Confidence 99976542 3789999999953
No 40
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=3.2e-07 Score=86.16 Aligned_cols=86 Identities=13% Similarity=0.186 Sum_probs=71.6
Q ss_pred ccccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecC
Q 041430 6 REKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAM 85 (1197)
Q Consensus 6 ~~~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~ 85 (1197)
.+.+.-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ ..+++++|||+|.+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~-----------------------~~~~~g~afV~f~~ 64 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFN-----------------------ERGSKGFGFVTFEN 64 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGG-TSCEEEEEEECC-----------------------TTTTCCEEEEEESC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEec-----------------------CCCCcEEEEEEECC
Confidence 344557799999999999999999999987 899999999875 13488999999999
Q ss_pred hHHHHHHHHhccCCceeecCeeeeeecCCCCC
Q 041430 86 PTYVTRAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 86 ~~~a~~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
.++|..|+.... ...++|+.|+|..+...+
T Consensus 65 ~~~a~~A~~~l~--g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 65 SADADRAREKLH--GTVVEGRKIEVNNATARV 94 (103)
T ss_dssp HHHHHHHHHHHT--TCEETTEECEEEECCSSC
T ss_pred HHHHHHHHHHhC--CCEECCEEEEEEEcccCC
Confidence 999999998653 346899999999644333
No 41
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.59 E-value=2.2e-07 Score=88.97 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=71.8
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-.++|+|+|+|..++.++|+++|+. +|.|..|+|..+ ...+++++||||+|.+.++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~a 70 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKD---------------------MATGKSKGYGFVSFFNKWDA 70 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEc---------------------CCCCCcceEEEEEECCHHHH
Confidence 36789999999999999999999996 899999999875 33578999999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecCCCCC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
..|+.... ...++|+.|+|..+...+
T Consensus 71 ~~A~~~l~--g~~~~g~~l~V~~a~~~~ 96 (115)
T 2dgo_A 71 ENAIQQMG--GQWLGGRQIRTNWATRKP 96 (115)
T ss_dssp HHHHHHTT--TCEETTEECEEEESSCCC
T ss_pred HHHHHHhC--CCEECCEEEEEEEccCCC
Confidence 99998654 347899999999654433
No 42
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=8.4e-08 Score=88.71 Aligned_cols=82 Identities=18% Similarity=0.277 Sum_probs=69.1
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEE-EEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRC-RLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
-.++|+|+|+|..++.++|.++|+. .|.|..| +|..+ +.+++++++|||+|.+.++|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~i~~~---------------------~~~g~~~g~afV~f~~~~~A 61 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSA-FGVILQTPKIMRD---------------------PDTGNSKGYAFINFASFDAS 61 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHT-TSCBSSCCEECCC---------------------TTTCSCCSEEEEEBSSHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEEc---------------------CCCCCcCeEEEEEECCHHHH
Confidence 3589999999999999999999998 7988877 87764 34578999999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecCCCC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLGPEN 116 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~~~~ 116 (1197)
..|+.... ...++|+.|+|..+...
T Consensus 62 ~~A~~~l~--g~~~~g~~l~v~~a~~~ 86 (96)
T 1x5t_A 62 DAAIEAMN--GQYLCNRPITVSYAFKK 86 (96)
T ss_dssp HHHHHTTT--TCEETTEECEEEESCCC
T ss_pred HHHHHHcC--CCEECCEEEEEEEeccc
Confidence 99999654 23689999999964433
No 43
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=1.8e-07 Score=88.07 Aligned_cols=79 Identities=13% Similarity=0.238 Sum_probs=67.0
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCC-CCccceEEEEecChHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDY-EKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~V~F~~~~~ 88 (1197)
.-.++|+|+|+|..++.++|+++|+. .| |..|+|..+ +.+ +++++||||+|.+.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G-i~~v~i~~~---------------------~~~~g~~~g~afV~f~~~~~ 69 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPRE---------------------PSNPERLKGFGYAEFEDLDS 69 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTT-SC-EEEEECCBC---------------------SSCTTSBCSCEEEEESSHHH
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHH-CC-ceEEEEecC---------------------CCCCCCcCeEEEEEECCHHH
Confidence 35689999999999999999999998 48 999998875 333 7889999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecCC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
|..|+.+- ...++|+.|+|..+.
T Consensus 70 a~~A~~l~---g~~~~g~~l~V~~a~ 92 (104)
T 1wi8_A 70 LLSALSLN---EESLGNKRIRVDVAD 92 (104)
T ss_dssp HHHHHGGG---TCEETTEECEEEECC
T ss_pred HHHHHhcC---CCEeCCcEEEEEEcc
Confidence 99999443 347899999999543
No 44
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1.8e-07 Score=87.39 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=69.8
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ + .++++++|||+|.+.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~-~g~~~g~afV~f~~~~~ 70 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKA-HGTVKDLRLVTN---------------------R-AGKPKGLAYVEYENESQ 70 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEEC---------------------T-TSCEEEEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEEC---------------------C-CCCEEeEEEEEECCHHH
Confidence 346789999999999999999999998 899999999886 2 57899999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|..|+.... ...++|+.|+|..+
T Consensus 71 a~~A~~~l~--g~~~~g~~l~v~~a 93 (100)
T 2do4_A 71 ASQAVMKMD--GMTIKENIIKVAIS 93 (100)
T ss_dssp HHHHHHHHT--TEESSSCEEEEEEC
T ss_pred HHHHHHHhC--CCEECCEEEEEEEC
Confidence 999997654 35789999999853
No 45
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=1.3e-07 Score=90.94 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=69.3
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +.++++++||||+|.+.++|.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~a~ 83 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQ-WGKLTDCVVMRD---------------------PASKRSRGFGFVTFSSMAEVD 83 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTS-SCCCSEEEEECC---------------------TTTSSCCSEEEEECSSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEEC---------------------CCCCCcCceEEEEeCCHHHHH
Confidence 5689999999999999999999976 899999999876 445789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
.|+.+ +...++|+.|+|..+
T Consensus 84 ~Ai~~---~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 84 AAMAA---RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTS---CSEEETTEEEEEECC
T ss_pred HHHHh---CCcEECCEEEEEEEC
Confidence 99988 256889999999953
No 46
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=2.8e-07 Score=87.50 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=67.7
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..-.++|+|+|+|..++.++|+++|+. .|.|..|+|+.. .+++++|||+|.+.++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~------------------------~~~~g~afV~f~~~~~ 73 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYK-YGAIRDIDLKNR------------------------RGGPPFAFVEFEDPRD 73 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEECCS------------------------SSSSCCEEEEESCHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC------------------------CCCCcEEEEEECCHHH
Confidence 335689999999999999999999998 899999999764 4589999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|..|+..... ..++|+.|+|..+
T Consensus 74 A~~A~~~l~g--~~~~g~~l~V~~a 96 (109)
T 1x4a_A 74 AEDAVYGRDG--YDYDGYRLRVEFP 96 (109)
T ss_dssp HHHHHHHHTT--CEETTEECEEECC
T ss_pred HHHHHHHcCC--CEECCeEEEEEEc
Confidence 9999976543 3789999999953
No 47
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.58 E-value=1.8e-07 Score=86.99 Aligned_cols=83 Identities=13% Similarity=0.224 Sum_probs=68.4
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+-. .+.++++++||||+|.+.++|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~------------------~~gt~~~~g~afV~f~~~~~a~ 64 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSK-VGAIKSCTISKKKN------------------KAGVLLSMGFGFVEYKKPEQAQ 64 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEEEC------------------TTCCEEEEEEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCC------------------CCCCcCcccEEEEEECCHHHHH
Confidence 3579999999999999999999986 89999999988600 0013478999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
.|+.... ...++|+.|+|..+.
T Consensus 65 ~A~~~l~--g~~~~g~~l~V~~a~ 86 (98)
T 2cpf_A 65 KALKQLQ--GHTVDGHKLEVRISE 86 (98)
T ss_dssp HHHHHST--TCEETTEECEEECSS
T ss_pred HHHHHhC--CCeeCCeEEEEEEcc
Confidence 9999654 247899999999543
No 48
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=1.4e-07 Score=88.27 Aligned_cols=83 Identities=23% Similarity=0.300 Sum_probs=70.6
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ +..+++++||||+|.+.++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~ 66 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLD---------------------YETEKHRGFAFVEFELAED 66 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTT-TSCCCCEECCCC---------------------SSSCCCSSEEEECCSSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhc-cCCEEEEEEEec---------------------CCCCCcceEEEEEECCHHH
Confidence 346789999999999999999999988 899988888765 3457899999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecCCC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLGPE 115 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~~~ 115 (1197)
|..|+.... ...++|+.|+|..+..
T Consensus 67 A~~A~~~l~--g~~~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 67 AAAAIDNMN--ESELFGRTIRVNLAKP 91 (102)
T ss_dssp HHHHHHHHT--TEEETTEEEEEEECCC
T ss_pred HHHHHHHhC--CCEECCcEEEEEeCCC
Confidence 999997653 4578999999995433
No 49
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=6.5e-08 Score=87.55 Aligned_cols=78 Identities=19% Similarity=0.208 Sum_probs=67.1
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..+++++||||+|.++++|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~---------------------~~~~~~~g~afV~f~~~~~a~ 61 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQP-YGKIVSTKAILD---------------------KTTNKCKGYGFVDFDSPSAAQ 61 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTT-TSCEEEEEEECC---------------------SSSCSCCSEEEEEESCHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEec---------------------CCCCCcCcEEEEEECCHHHHH
Confidence 3579999999999999999999996 799999999876 345789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeec
Q 041430 91 RAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
.|+.... ...++|+.||++.
T Consensus 62 ~A~~~l~--g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 62 KAVTALK--ASGVQAQMAKQSG 81 (85)
T ss_dssp HHHHHHH--HHTCCEESCCSSC
T ss_pred HHHHHhc--CCeEeeEEEeecC
Confidence 9998543 2367889998873
No 50
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.57 E-value=2.9e-07 Score=91.10 Aligned_cols=86 Identities=15% Similarity=0.192 Sum_probs=73.2
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
.+...++|+|+|+|..++.++|+++|+. +|.|..|+|..+ ..++++++||||+|.+.+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~ 95 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFER-YGPIESVKIVCD---------------------RETRQSRGYGFVKFQSGS 95 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHH-HSCEEEEEEEEE---------------------TTTTEEEEEEEEEESSHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEc---------------------CCCCCcceEEEEEECCHH
Confidence 3446789999999999999999999988 799999999886 345789999999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeecCCCCC
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
+|..|+.... ...++|+.|+|..+....
T Consensus 96 ~a~~A~~~l~--g~~~~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 96 SAQQAIAGLN--GFNILNKRLKVALAASGH 123 (139)
T ss_dssp HHHHHHHHTT--TEECSSCEEEEEESSCCC
T ss_pred HHHHHHHHhC--CCEECCeEEEEEECCCCC
Confidence 9999999653 357899999999644433
No 51
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.57 E-value=1.1e-07 Score=89.55 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=68.1
Q ss_pred cccEEEEeCCCc------cccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEec
Q 041430 11 VDAQVSFGGFDR------NVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFA 84 (1197)
Q Consensus 11 ~~~~i~v~gf~~------~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~ 84 (1197)
..++|.|+|+|. .++.++|.++|+. .|.|..|+|..+ +.++++++||||+|.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~-~G~i~~v~i~~d---------------------~~tg~~kG~afV~f~ 62 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSK-AGKVVNMEFPID---------------------EATGKTKGFLFVECG 62 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHT-TSCEEEEECCEE---------------------TTTTEECSEEEEEES
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHh-cCCEeEEEEEEc---------------------CCCCccceEEEEEEC
Confidence 578999999999 9999999999987 899999999886 445789999999999
Q ss_pred ChHHHHHHHHhccCCceeecC-eeeeeec
Q 041430 85 MPTYVTRAVDAAGRTELFLNG-RALKVSL 112 (1197)
Q Consensus 85 ~~~~a~~a~~~a~~~~l~~~~-~~lkv~~ 112 (1197)
++++|..|+..... ..++| +.|+|..
T Consensus 63 ~~~~A~~Ai~~lng--~~~~g~r~l~V~~ 89 (100)
T 3ns6_A 63 SMNDAKKIIKSFHG--KRLDLKHRLFLYT 89 (100)
T ss_dssp SHHHHHHHHHHHTT--CBSSSSCBCEEEE
T ss_pred CHHHHHHHHHHhCC--cccCCCeEEEEEE
Confidence 99999999986532 35677 9999984
No 52
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.57 E-value=1.9e-07 Score=89.28 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=69.9
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..-.++|+|+|+|..++.++|.++|+. +|.|..|+|..+ +..+++++||||+|.+.++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~F~~~~~ 80 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMD---------------------SETGRSKGYGFITFSDSEC 80 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTT-TSCEEEEEEEEE---------------------TTTTEEEEEEEEEESCHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEc---------------------CCCCccceEEEEEECCHHH
Confidence 335689999999999999999999977 899999999876 3457899999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|..|+.... ...++|+.|+|+.+
T Consensus 81 A~~Ai~~l~--g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 81 AKKALEQLN--GFELAGRPMKVGHV 103 (108)
T ss_dssp HHHHHHHHT--TCCSSSSCCEEECS
T ss_pred HHHHHHHcC--CCEECCEEEEEEEc
Confidence 999998654 34789999999953
No 53
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=3.6e-07 Score=85.76 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=67.9
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
+...++|+|+|+|..++.++|.++|+. .|.|..|+|..+ ...+++||||+|.+.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~-----------------------~~~~~g~afV~f~~~~~ 67 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQ-IGPCKSCKMITE-----------------------HTSNDPYCFVEFYEHRD 67 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHH-HSCEEEEEEECC-----------------------CCSSCCEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHh-cCCEeEEEEEec-----------------------CCCCCCEEEEEECCHHH
Confidence 346799999999999999999999987 899999999875 13468999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|..|+.... ...++|+.|+|..+
T Consensus 68 a~~A~~~l~--g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 68 AAAALAAMN--GRKILGKEVKVNWA 90 (103)
T ss_dssp HHHHHHHHT--TEEETTEEEEEEEC
T ss_pred HHHHHHHhC--CCCcCCCeEEEEEC
Confidence 999999553 34688999999953
No 54
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=1.8e-07 Score=87.88 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=71.1
Q ss_pred cccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecCh
Q 041430 7 EKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMP 86 (1197)
Q Consensus 7 ~~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~ 86 (1197)
..+.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ .+++++||||+|.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~-----------------------~g~~~g~afV~f~~~ 65 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSP-FGTITSAKVMME-----------------------GGRSKGFGFVCFSSP 65 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTT-TSCEEEEEEEEC-----------------------SSSEEEEEEEEESSH
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcC-----------------------CCCcCEEEEEEECCH
Confidence 34557889999999999999999999996 899999999874 467899999999999
Q ss_pred HHHHHHHHhccCCceeecCeeeeeecCCC
Q 041430 87 TYVTRAVDAAGRTELFLNGRALKVSLGPE 115 (1197)
Q Consensus 87 ~~a~~a~~~a~~~~l~~~~~~lkv~~~~~ 115 (1197)
++|..|+..... ..++|+.|+|..+..
T Consensus 66 ~~A~~A~~~l~g--~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 66 EEATKAVTEMNG--RIVATKPLYVALAQR 92 (103)
T ss_dssp HHHHHHHHHHTT--CBSSSSBCEEEECSS
T ss_pred HHHHHHHHHhCC--CEeCCcEEEEEEecc
Confidence 999999996542 367999999995443
No 55
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=1.3e-07 Score=88.60 Aligned_cols=84 Identities=14% Similarity=0.213 Sum_probs=70.7
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
...-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..+++++||||+|.+.+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~ 65 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSK-YGQISEVVVVKD---------------------RETQRSRGFGFVTFENID 65 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHH-HSCCCEEEECCC---------------------SSSCSCCSEEEEECSSHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeC---------------------CCCCCcccEEEEEECCHH
Confidence 3446789999999999999999999998 799999999875 335789999999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeecCCC
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSLGPE 115 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~~~~ 115 (1197)
+|..|+..... ..++|+.|+|..+..
T Consensus 66 ~A~~A~~~l~g--~~~~g~~l~v~~a~~ 91 (102)
T 1x5s_A 66 DAKDAMMAMNG--KSVDGRQIRVDQAGK 91 (102)
T ss_dssp HHHHHHHHHTT--CCTTSCCCEEEEEEC
T ss_pred HHHHHHHHhCC--CEECCeEEEEEECCC
Confidence 99999976542 368999999985433
No 56
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.55 E-value=2.1e-07 Score=88.26 Aligned_cols=84 Identities=17% Similarity=0.151 Sum_probs=69.2
Q ss_pred ccccccccccEEEEeCCCccc------cHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccc
Q 041430 4 EGREKLLVDAQVSFGGFDRNV------KAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEP 77 (1197)
Q Consensus 4 ~~~~~~~~~~~i~v~gf~~~~------~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (1197)
+....+...++|+|+|+|..+ +.++|.++|+. .|.|..|+|... .+++++
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~v~~v~i~~~-----------------------~g~~~G 62 (105)
T 2nlw_A 7 RPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYPEE-----------------------DGKTKG 62 (105)
T ss_dssp CCCSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGG-GSCEEEEECCCB-----------------------TTBSCC
T ss_pred CCCCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhc-CCCEEEEEeeCC-----------------------CCCeee
Confidence 344445568899999999999 78999999987 899999887632 468999
Q ss_pred eEEEEecChHHHHHHHHhccCCceeecCe-eeeeecC
Q 041430 78 HAFVHFAMPTYVTRAVDAAGRTELFLNGR-ALKVSLG 113 (1197)
Q Consensus 78 ~a~V~F~~~~~a~~a~~~a~~~~l~~~~~-~lkv~~~ 113 (1197)
||||+|.++++|..|+.... ...++|+ .|+|..+
T Consensus 63 ~afV~f~~~~~A~~Ai~~l~--g~~~~g~~~l~V~~a 97 (105)
T 2nlw_A 63 YIFLEYASPAHAVDAVKNAD--GYKLDKQHTFRVNLF 97 (105)
T ss_dssp EEEEEECSSSHHHHHHHHCS--SEECSTTCEEEEECS
T ss_pred EEEEEECCHHHHHHHHHHhC--CcccCCCceEEEEEc
Confidence 99999999999999999653 3467887 9999953
No 57
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=1.5e-07 Score=89.83 Aligned_cols=84 Identities=20% Similarity=0.242 Sum_probs=70.1
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhccccEE--------EEEEeecCCCCCCCCCccccccccccccCCCCCccceE
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVW--------RCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHA 79 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 79 (1197)
.+.-.++|+|+|+|..++.++|+++|+. .|.|. .|+|..+ ..++++++||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~---------------------~~~g~~~g~a 68 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQ-CGVVKMNKRTGQPMIHIYLD---------------------KETGKPKGDA 68 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTT-TSCBCBCSSSCCBSEECCBC---------------------TTTCSBCSEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCEeEccccCccCEEEEEe---------------------CCCCCeeeEE
Confidence 4457789999999999999999999998 78887 5777764 3457899999
Q ss_pred EEEecChHHHHHHHHhccCCceeecCeeeeeecCCC
Q 041430 80 FVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPE 115 (1197)
Q Consensus 80 ~V~F~~~~~a~~a~~~a~~~~l~~~~~~lkv~~~~~ 115 (1197)
||+|.+.++|..|+.... ...++|+.|+|..+..
T Consensus 69 fV~f~~~~~A~~Ai~~l~--g~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 69 TVSYEDPPTAKAAVEWFD--GKDFQGSKLKVSLARK 102 (113)
T ss_dssp EEEBSSHHHHHHHHHHHT--TCEETTEECEEECSSC
T ss_pred EEEECCHHHHHHHHHHcC--CCccCCCEEEEEECCC
Confidence 999999999999998643 2368999999995443
No 58
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.55 E-value=1.2e-07 Score=88.94 Aligned_cols=78 Identities=21% Similarity=0.345 Sum_probs=68.6
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
.+...++|+|+|+|..++.++|.++|+. .|.|..|+|..+ . .++++++|||+|.+.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~-~g~~~g~afV~f~~~~ 61 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFAR-YGSVKEVKIITD---------------------R-TGVSKGYGFVSFYNDV 61 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------T-TSCEEEEEEEEESSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEEC---------------------C-CCCccceEEEEECCHH
Confidence 4456789999999999999999999987 899999999986 2 5789999999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeec
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
+|..|+. +...++|+.|+|..
T Consensus 62 ~a~~Ai~----~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 62 DVQKIVE----SQINFHGKKLKLGP 82 (102)
T ss_dssp CHHHHTT----CCCEETTEECEEEE
T ss_pred HHHHHHh----CCCeECCEEEEEEE
Confidence 9999998 24588999999764
No 59
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=1.5e-07 Score=89.99 Aligned_cols=83 Identities=13% Similarity=0.196 Sum_probs=70.0
Q ss_pred cccccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEec
Q 041430 5 GREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFA 84 (1197)
Q Consensus 5 ~~~~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~ 84 (1197)
........++|+|+|+|..++.++|+++|+. .|.|..|+|..+ ..+++++|||+|.
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~-----------------------~~~~kg~afV~f~ 77 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFN-----------------------ERGSKGFGFVTFE 77 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGG-TCCCSCEEECCB-----------------------TTBCTTEEEEECC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHh-cCCEEEEEEEEC-----------------------CCCCceEEEEEEC
Confidence 3444557889999999999999999999987 799999998875 2358999999999
Q ss_pred ChHHHHHHHHhccCCceeecCeeeeeecC
Q 041430 85 MPTYVTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 85 ~~~~a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
+.++|..|+.... ...++|+.|+|..+
T Consensus 78 ~~~~A~~Ai~~l~--g~~~~g~~l~V~~a 104 (109)
T 2err_A 78 NSADADRAREKLH--GTVVEGRKIEVNNA 104 (109)
T ss_dssp CSHHHHHHHHHHT--TCEETTEECEEEEC
T ss_pred CHHHHHHHHHHcC--CCEECCEEEEEEEC
Confidence 9999999999543 23689999999854
No 60
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.55 E-value=3.1e-07 Score=86.43 Aligned_cols=83 Identities=17% Similarity=0.258 Sum_probs=69.2
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ + .+++++||||+|.+.++|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~-~g~~~g~afV~f~~~~~A 69 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQP-FGVIDECTVLRG---------------------P-DGSSKGCAFVKFSSHTEA 69 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEEC---------------------S-SSCEEEEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC---------------------C-CCCcCcEEEEEeCCHHHH
Confidence 45799999999999999999999987 899999999885 2 468899999999999999
Q ss_pred HHHHHhccCCceeecC--eeeeeecCCCC
Q 041430 90 TRAVDAAGRTELFLNG--RALKVSLGPEN 116 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~--~~lkv~~~~~~ 116 (1197)
..|+..... ..+.+| ++|+|..+...
T Consensus 70 ~~Ai~~l~g-~~~~gg~~~~l~V~~a~~~ 97 (105)
T 2dnh_A 70 QAAIHALHG-SQTMPGASSSLVVKFADTD 97 (105)
T ss_dssp HHHHHHHSS-CCCCTTCSSCCEEEESCSS
T ss_pred HHHHHHHcC-CccCCCCCccEEEEECccC
Confidence 999986543 334444 99999954433
No 61
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.55 E-value=2.3e-07 Score=89.72 Aligned_cols=81 Identities=21% Similarity=0.292 Sum_probs=69.4
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ . +++++++|||+|.+.++|.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~-~g~~~g~afV~F~~~~~A~ 62 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGK-HGPISEVLLIKD---------------------R-TSKSRGFAFITFENPADAK 62 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHT-SSCCSEEEEECS---------------------T-TTTCCCEEEEECSSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEEC---------------------C-CCCcccEEEEEECCHHHHH
Confidence 3589999999999999999999987 799999999875 2 5789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCCCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGPEN 116 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~~~ 116 (1197)
.|+.... ...++|+.|+|..+...
T Consensus 63 ~Ai~~l~--g~~~~g~~l~V~~a~~~ 86 (116)
T 2fy1_A 63 NAAKDMN--GKSLHGKAIKVEQAKKP 86 (116)
T ss_dssp HHHHHCS--SCBCSSSBCEEEECCCS
T ss_pred HHHHHhC--CCEECCEEEEEEECCCC
Confidence 9998654 34689999999865433
No 62
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.54 E-value=1.3e-07 Score=88.38 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=68.1
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEE--------EEEeecCCCCCCCCCccccccccccccCCCCCccceEEE
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWR--------CRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFV 81 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V 81 (1197)
.-.++|+|+|+|..++.++|+++|+. .|.|.. |+|..+ +.+++++++|||
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~---------------------~~~g~~~G~afV 68 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTD---------------------RETGKLKGEATV 68 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTT-TSCBCEETTTTEESEEEEEC---------------------TTTCSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-hCCEeeccccccccEEEEec---------------------CCCCCeeeEEEE
Confidence 46789999999999999999999997 898888 888876 445789999999
Q ss_pred EecChHHHHHHHHhccCCceeecCeeeeeec
Q 041430 82 HFAMPTYVTRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 82 ~F~~~~~a~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
+|.+.++|..|+..... ..++|+.|+|..
T Consensus 69 ~f~~~~~a~~Ai~~l~g--~~~~g~~l~V~~ 97 (99)
T 2la6_A 69 SFDDPPSAKAAIDWFDG--KEFSGNPIKVSF 97 (99)
T ss_dssp EBSSHHHHHHHHHHHTT--CBSSSSBCEEEE
T ss_pred EECCHHHHHHHHHHhCC--CEeCCcEEEEEe
Confidence 99999999999986542 367899999974
No 63
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.54 E-value=3.1e-07 Score=90.56 Aligned_cols=80 Identities=24% Similarity=0.314 Sum_probs=69.2
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..-.++|+|+|+|..++.++|+++|+. .|.|..++|..+ +..++++++|||+|.+.++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~ 117 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLD---------------------YETEKHRGFAFVEFELAED 117 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCCC---------------------TTTCCCCSEEEEEESCHHH
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHh-cCCEEEEEEeec---------------------CCCCCcCcEEEEEECCHHH
Confidence 346789999999999999999999987 799999998765 3457899999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeec
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
|..|+.... ...++|+.|+|..
T Consensus 118 a~~A~~~l~--g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 118 AAAAIDNMN--ESELFGRTIRVNL 139 (140)
T ss_dssp HHHHHHHST--EEEETTEEEEEEC
T ss_pred HHHHHHHhC--CCEECCEEEEEEe
Confidence 999997653 4578999999973
No 64
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.54 E-value=1.6e-07 Score=88.45 Aligned_cols=85 Identities=16% Similarity=0.167 Sum_probs=70.8
Q ss_pred cccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecCh
Q 041430 7 EKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMP 86 (1197)
Q Consensus 7 ~~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~ 86 (1197)
..+.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +.++++++||||+|.+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~ 65 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEE-FGKIYELTVLKD---------------------RFTGMHKGCAFLTYCER 65 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHH-HSCCCEEECCCC---------------------SSSCSCCSEEEEEESSH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEec---------------------CCCCCcceEEEEEECCH
Confidence 34557789999999999999999999998 799999998775 34578999999999999
Q ss_pred HHHHHHHHhccCCceee--cCeeeeeecCC
Q 041430 87 TYVTRAVDAAGRTELFL--NGRALKVSLGP 114 (1197)
Q Consensus 87 ~~a~~a~~~a~~~~l~~--~~~~lkv~~~~ 114 (1197)
++|..|+...... .++ +|+.|+|..+.
T Consensus 66 ~~A~~A~~~l~g~-~~~~~~g~~l~v~~a~ 94 (106)
T 2dgp_A 66 ESALKAQSALHEQ-KTLPGMNRPIQVKPAD 94 (106)
T ss_dssp HHHHHHHHHHTTT-CCCTTCSSCCEEEECC
T ss_pred HHHHHHHHHhcCC-cccCCCCceEEEEECC
Confidence 9999999865432 233 78999999543
No 65
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=1.2e-07 Score=89.03 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=69.7
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..+++++||||+|.+.++|
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~---------------------~~~g~~~g~afV~f~~~~~a 63 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSE-VGPVVSFRLVYD---------------------RETGKPKGYGFCEYQDQETA 63 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHT-TSCCSEEEEEEE---------------------TTTTEEEEEEEEECSCHHHH
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHh-cCCeeEEEEEeC---------------------CCCCccceEEEEEECCHHHH
Confidence 35689999999999999999999997 899999999876 33578899999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecCC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
..|+.... ...++|+.|+|..+.
T Consensus 64 ~~A~~~l~--g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 64 LSAMRNLN--GREFSGRALRVDNAA 86 (104)
T ss_dssp HHHHHHSS--SBSCSSSCBEEEETT
T ss_pred HHHHHHhC--CCeeCCcEEEEEeCC
Confidence 99998654 346799999999543
No 66
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.53 E-value=5.5e-08 Score=92.52 Aligned_cols=81 Identities=10% Similarity=0.122 Sum_probs=67.7
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhcccc---EEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEec
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGG---VWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFA 84 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~---v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~ 84 (1197)
...-..+|+|+|+|..++.++|++||+. +|. |..|+|..+ .. ++++++|||+|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-~g~~~~v~~v~i~~~---------------------~~-g~~~G~afV~F~ 63 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLN---------------------RD-GKRRGDALIEME 63 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTT-SCBTTTTTTEECCCC---------------------TT-STTCSEEEEEBS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHh-cCCcCCcceEEEEEC---------------------CC-CCEeeEEEEEEC
Confidence 3446789999999999999999999997 565 778888765 33 789999999999
Q ss_pred ChHHHHHHHHhccCCceeecCeeeeeecCC
Q 041430 85 MPTYVTRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 85 ~~~~a~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
+.++|..|+.+- ...++|++|+|..+.
T Consensus 64 ~~~~a~~Al~~~---~~~~~gr~i~V~~a~ 90 (107)
T 2lmi_A 64 SEQDVQKALEKH---RMYMGQRYVEVYEIN 90 (107)
T ss_dssp SHHHHHHHHTTT---TCCSSSSCCCCEECC
T ss_pred CHHHHHHHHHhC---cceeCCeEEEEEECC
Confidence 999999999953 347899999998543
No 67
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.53 E-value=3.5e-07 Score=86.95 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=66.3
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|.+.|+. .|.|..+++.. ++++|||+|++.++|.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~-fG~V~~v~i~~---------------------------~kg~AFVef~~~~~A~ 71 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQE-FGPISYVVVMP---------------------------KKRQALVEFEDVLGAC 71 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEET---------------------------TTTEEEEEESSHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEEc---------------------------CCCEEEEEECCHHHHH
Confidence 5789999999999999999999998 79999998863 3589999999999999
Q ss_pred HHHHhccCCceeecCeeeeeec
Q 041430 91 RAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
.|++......+.++|++|+|.-
T Consensus 72 ~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 72 NAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp HHHHHHHHSCEEETTEEEEEEE
T ss_pred HHHHHhcCCCceeCCcEEEEEe
Confidence 9999876657889999999984
No 68
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.53 E-value=2.1e-07 Score=89.47 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=69.0
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +..+++++||||+|.+.++|
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~---------------------~~~g~~~g~afV~f~~~~~A 95 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLP-FGNVISAKVFID---------------------KQTSLSKCFGFVSFDNPDSA 95 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTT-SCEEEEEEECCC---------------------SSSSCCCCEEEEEEESSHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeC---------------------CCCCCcCcEEEEEECCHHHH
Confidence 35689999999999999999999997 899999999875 33578999999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeec
Q 041430 90 TRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
..|+.... ...++|+.|+|..
T Consensus 96 ~~A~~~l~--g~~~~g~~l~V~~ 116 (118)
T 2khc_A 96 QVAIKAMN--GFQVGTKRLKVQL 116 (118)
T ss_dssp HHHHHHCC--CCEETTEECCEEE
T ss_pred HHHHHHcC--CCEECCEEEEEEe
Confidence 99999654 3478999999974
No 69
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=1.2e-07 Score=91.26 Aligned_cols=80 Identities=13% Similarity=0.097 Sum_probs=69.0
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccE-EEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGV-WRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
+...++|+|+|+|..++.++|++||+. +|.| ..|+|..+ + .+++++||||+|.+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v~~~v~i~~d---------------------~-~g~~~G~afV~F~~~~ 68 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEG-IPVDENAVHVLVD---------------------N-NGQGLGQALVQFKNED 68 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTT-SCCCSTTEEECCC---------------------T-TSSCSSCEEEECSSHH
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHh-CCCcCCeEEEEEC---------------------C-CCCcceEEEEEECCHH
Confidence 445689999999999999999999998 4988 77888775 2 5789999999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeecCC
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
+|..|+.+ +...++|++|+|..+.
T Consensus 69 ~a~~Al~~---~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 69 DARKSERL---HRKKLNGREAFVHVVT 92 (114)
T ss_dssp HHHHHGGG---CSEEETTEEEEEEEEC
T ss_pred HHHHHHHh---CCCccCCeEEEEEECC
Confidence 99999887 3568999999998543
No 70
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.52 E-value=2.6e-07 Score=88.60 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=69.5
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|+++|+. +|.|..|+|..+ +..+++++||||+|.+.++|.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~a~ 81 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMP-FGNVVSAKVFID---------------------KQTNLSKCFGFVSYDNPVSAQ 81 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGG-GSCCSEEEEEEC---------------------SSSCSEEEEEEEECSSHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC---------------------CCCCCcCccEEEEECCHHHHH
Confidence 5689999999999999999999996 899999999886 335789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
.|+.... ...++|+.|+|..+.
T Consensus 82 ~A~~~l~--g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 82 AAIQSMN--GFQIGMKRLKVQLKR 103 (115)
T ss_dssp HHHHHHT--TCEETTEECEEECCC
T ss_pred HHHHHcC--CCEECCEEEEEEEcC
Confidence 9997654 347899999999543
No 71
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.52 E-value=4.6e-07 Score=93.57 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=70.5
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ +.++++++||||+|.+.++|
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~A 68 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVMRD---------------------PNTKRSRGFGFVTYATVEEV 68 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEEc---------------------CCCCCccceEEEEeCCHHHH
Confidence 46789999999999999999999997 799999999886 34578999999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecCC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
..|+.+- ...++|+.|+|..+.
T Consensus 69 ~~A~~~~---~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 69 DAAMNAR---PHKVDGRVVEPKRAV 90 (196)
T ss_dssp HHHHHTC---SCEETTEECEEEECC
T ss_pred HHHHhcC---CCEECCEEeeeeccc
Confidence 9999873 357899999998543
No 72
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=2.6e-07 Score=87.57 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=69.0
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhcccc-EEEEEEe-ecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGG-VWRCRLK-TSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~-v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
...++|+|+|+|..++.++|.++|+. .|. |..|++. .+ ...+++++||||+|.+.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~~v~~v~i~~~~---------------------~~~g~~~g~afV~f~~~~ 63 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAK-VTEGVLDVIVYASA---------------------ADKMKNRGFAFVEYESHR 63 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHH-HSTTEEEEECCSSS---------------------CTTTTTCCEEEEEESSHH
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHH-hcCCceEEEEEccC---------------------CCCCCcCcEEEEEecCHH
Confidence 35689999999999999999999998 676 9888886 32 224689999999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeecCC
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
+|..|+....++...++|+.|+|..+.
T Consensus 64 ~A~~A~~~l~~g~~~~~g~~l~V~~a~ 90 (109)
T 2dis_A 64 AAAMARRKLMPGRIQLWGHQIAVDWAE 90 (109)
T ss_dssp HHHHHHTTTTTCCSCBTTBCCEEEESC
T ss_pred HHHHHHHHhhCCCceecCCeEEEEEcC
Confidence 999999976433468899999998543
No 73
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.52 E-value=1.1e-07 Score=89.19 Aligned_cols=78 Identities=14% Similarity=0.252 Sum_probs=65.0
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccC-CCCCccceEEEEecChHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTD-DYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~V~F~~~~~ 88 (1197)
...++|+|+|+|..++.++|+++|+. .| |..|+|..+ . ..++++++|||+|.+.++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G-i~~v~i~~~---------------------~~~~g~~~g~afV~f~~~~~ 73 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPRE---------------------PSNPERLKGFGYAEFEDLDS 73 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCS-SC-EEEEECSCC---------------------TTTTCCCCSCEEEEECCHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEec---------------------CCcCCccCeEEEEEECCHHH
Confidence 46789999999999999999999998 59 999998775 2 257899999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|..|+.+- ...++|+.|+|..+
T Consensus 74 a~~Ai~l~---g~~~~g~~l~V~~a 95 (100)
T 2j76_E 74 LLSALSLN---EESLGNRRIRVDVA 95 (100)
T ss_dssp HHHHHHTT---TCCBTTBCCCCEEC
T ss_pred HHHHHhcC---CCEECCeEEEEEec
Confidence 99999443 34689999999853
No 74
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=2.6e-07 Score=85.99 Aligned_cols=80 Identities=13% Similarity=0.139 Sum_probs=68.4
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEE-EEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVW-RCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
....++|+|+|+|..++.++|+++|+. .|.|. .|+|..+ +.++++++||||+|.+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~v~i~~~---------------------~~~g~~~g~afV~f~~~~ 63 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFAT-MGETVMSVKIIRN---------------------RLTGIPAGYCFVEFADLA 63 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHH-TTCCCCEEEEEEC---------------------SSSCCEEEEEEEECSCHH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHH-hCCcceEEEEeec---------------------CCCCCcCCEEEEEeCCHH
Confidence 446789999999999999999999998 89888 9999876 335789999999999999
Q ss_pred HHHHHHHhccCCceeecCee----eeeec
Q 041430 88 YVTRAVDAAGRTELFLNGRA----LKVSL 112 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~----lkv~~ 112 (1197)
+|..|+.... ...++|+. |+|..
T Consensus 64 ~a~~A~~~l~--g~~~~g~~~~~~l~v~~ 90 (99)
T 2div_A 64 TAEKCLHKIN--GKPLPGATPAKRFKLNY 90 (99)
T ss_dssp HHHHHHHTTT--TSEESSCSSCEECCEEE
T ss_pred HHHHHHHHHc--CCccCCCCcceeEEEee
Confidence 9999998654 24678888 88874
No 75
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.51 E-value=3.5e-07 Score=86.18 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=72.3
Q ss_pred cccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecCh
Q 041430 7 EKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMP 86 (1197)
Q Consensus 7 ~~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~ 86 (1197)
..+.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ + ...+++++||||+|.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~--~------------------~~~~~~~g~afV~f~~~ 68 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFST-FGELKTVRLPKK--M------------------TGTGAHRGFGFVDFITK 68 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCCC--C------------------SSSCSSCSEEEEEESSH
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHc-cCCeEEEEEecC--C------------------CCCCCcCceEEEEECCH
Confidence 34557899999999999999999999988 899999998753 0 12478899999999999
Q ss_pred HHHHHHHHhc-cCCceeecCeeeeeecCCCCC
Q 041430 87 TYVTRAVDAA-GRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 87 ~~a~~a~~~a-~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
++|..|+... . ...++|+.|+|..+...+
T Consensus 69 ~~a~~A~~~l~~--~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 69 QDAKKAFNALCH--STHLYGRRLVLEWADSEV 98 (107)
T ss_dssp HHHHHHHHHHHT--CCBSSSCBCEEEECCCCC
T ss_pred HHHHHHHHHhcc--CCeECCCEEEEEeCCCCC
Confidence 9999999976 3 347889999999654443
No 76
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.51 E-value=1.7e-07 Score=84.35 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=61.7
Q ss_pred cEEEEeCCCccc------cHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecCh
Q 041430 13 AQVSFGGFDRNV------KAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMP 86 (1197)
Q Consensus 13 ~~i~v~gf~~~~------~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~ 86 (1197)
++|+|+|+|..+ +.++|.++|+. .|.|..|++... .++++++|||+|.++
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~i~~v~i~~~-----------------------~g~~~g~afV~f~~~ 57 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYPEE-----------------------DGKTKGYIFLEYASP 57 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHT-TCCEEEEECCCB-----------------------TTBCCCEEEEEESSH
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhh-cCCeEEEEecCC-----------------------CCcEeEEEEEEECCH
Confidence 689999999999 77999999987 899998887622 468999999999999
Q ss_pred HHHHHHHHhccCCceeecCe-eeeee
Q 041430 87 TYVTRAVDAAGRTELFLNGR-ALKVS 111 (1197)
Q Consensus 87 ~~a~~a~~~a~~~~l~~~~~-~lkv~ 111 (1197)
++|..|+.... ...++|+ .|+|+
T Consensus 58 ~~A~~Ai~~ln--g~~~~g~~~l~V~ 81 (81)
T 2krb_A 58 AHAVDAVKNAD--GYKLDKQHTFRVN 81 (81)
T ss_dssp HHHHHHHTTSS--SCCCSSSSCCCCC
T ss_pred HHHHHHHHHhc--CcccCCceeEEeC
Confidence 99999999654 2367787 88875
No 77
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.50 E-value=4.2e-07 Score=85.77 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=68.5
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
...++|+|+|+|..++.++|+++|+. .|.|..|+|..+ . .++++++|||+|.+.++|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~-~g~~~g~afV~f~~~~~a 83 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVHYD---------------------R-SGRSLGTADVHFERKADA 83 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEC---------------------T-TSCEEEEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC---------------------C-CCCcceEEEEEECCHHHH
Confidence 45789999999999999999999996 899999999986 2 578899999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeec
Q 041430 90 TRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
..|+.... ...++|+.|+|..
T Consensus 84 ~~A~~~l~--g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 84 LKAMKQYN--GVPLDGRPMNIQL 104 (107)
T ss_dssp HHHHHHHT--TCEETTEECEEEE
T ss_pred HHHHHHhC--CCEeCCcEEEEEE
Confidence 99999643 2367999999984
No 78
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=8e-07 Score=84.82 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=69.1
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
...++|+|+|+|..++.++|+++|+. +|.|..|+|..+ . .++++++|||+|.+.++|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~---------------------~-~g~~~g~afV~f~~~~~a 69 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSM-AGVVVRADILED---------------------K-DGKSRGIGTVTFEQSIEA 69 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEEC---------------------T-TCSEEEEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC---------------------C-CCCeeeEEEEEECCHHHH
Confidence 35789999999999999999999997 899999999885 2 367899999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecCC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
..|+.... ...++|+.|+|..+.
T Consensus 70 ~~A~~~l~--g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 70 VQAISMFN--GQLLFDRPMHVKMDE 92 (114)
T ss_dssp HHHHHHHT--TCEETTEECEEEECS
T ss_pred HHHHHHhC--CCEeCCCEEEEEEcc
Confidence 99999543 236799999998643
No 79
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=3.8e-07 Score=87.47 Aligned_cols=79 Identities=11% Similarity=0.153 Sum_probs=67.4
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
..++|+|+|+|..++.+||.++|+. .|.|..|+|..+ +++|||+|++.++|.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~-fG~V~~v~i~~~---------------------------kGfaFVeF~~~~~A~ 66 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG---------------------------KNQAFIEMNTEEAAN 66 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHH-HCCEEEEEEETT---------------------------TTEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcC---------------------------CCEEEEEECCHHHHH
Confidence 4689999999999999999999998 899999998752 589999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCCCCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
.|+.....+...++|++|+|..+...+
T Consensus 67 ~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 67 TMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp HHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred HHHHHhccCCceECCEEEEEEEcCCCC
Confidence 999965433467899999999654444
No 80
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.49 E-value=7e-08 Score=88.30 Aligned_cols=79 Identities=15% Similarity=0.284 Sum_probs=66.2
Q ss_pred cEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHHHH
Q 041430 13 AQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRA 92 (1197)
Q Consensus 13 ~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a 92 (1197)
++|+|+|+|..++.++|+++|+. .|.|..|++..+ +..++++++|||+|.+.+ |..|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~-a~~a 58 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQ-FGKVFNVKLIYD---------------------RETKKPKGFGFVEMQEES-VSEA 58 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHH-HTCCSEEEECCC---------------------SSSCCCCEEEEEEECTTH-HHHH
T ss_pred cEEEECCCCCCCCHHHHHHHHHh-cCCEEEEEEEEc---------------------CCCCCcceEEEEEECCHH-HHHH
Confidence 68999999999999999999998 799999998875 335789999999999999 9999
Q ss_pred HHhccCCceeecCeeeeeecCCCC
Q 041430 93 VDAAGRTELFLNGRALKVSLGPEN 116 (1197)
Q Consensus 93 ~~~a~~~~l~~~~~~lkv~~~~~~ 116 (1197)
+..... ..++|+.|+|..+...
T Consensus 59 ~~~l~g--~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 59 IAKLDN--TDFMGRTIRVTEANPK 80 (90)
T ss_dssp HHTSCS--SCCSSSSCSEEEC---
T ss_pred HHHhCC--CEECCeEEEEEEcCCC
Confidence 986543 4689999999964433
No 81
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.49 E-value=3.2e-07 Score=89.29 Aligned_cols=82 Identities=10% Similarity=0.112 Sum_probs=69.9
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
...-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ ..+++++++|||+|.+.+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~ 75 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLD---------------------RRTGYLKGYTLVEYETYK 75 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBC---------------------TTTSSBCSCEEEEESSHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEec---------------------CCCCccceEEEEEECCHH
Confidence 3345789999999999999999999987 899999998875 335788999999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeecC
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
+|..|+.... ...++|+.|+|..+
T Consensus 76 ~a~~A~~~l~--g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 76 EAQAAMEGLN--GQDLMGQPISVDWC 99 (126)
T ss_dssp HHHHHHHHHT--TCBSSSSBCEEEES
T ss_pred HHHHHHHHhC--CCeeCCeEEEEEEe
Confidence 9999998653 24679999999854
No 82
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.49 E-value=4.7e-07 Score=91.43 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=69.8
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
...++|+|+|+|..++.++|.++|+. .|.|..|+|..+ +.++++++||||+|.+.++|
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~v~~~~i~~~---------------------~~~g~~~g~afV~f~~~~~a 125 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEK-YGRVGDVYIPRD---------------------RYTKESRGFAFVRFHDKRDA 125 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHH-HSCEEEEECCCC---------------------SSCTTSCCEEEEEESBHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeec---------------------CCCCccceEEEEEECCHHHH
Confidence 45789999999999999999999976 899999999875 34578999999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecCC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
..|+.... ...++|++|+|..+.
T Consensus 126 ~~A~~~l~--g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 126 EDAMDAMD--GAVLDGRELRVQMAR 148 (158)
T ss_dssp HHHHHHST--TEESSSSEEEEEEEC
T ss_pred HHHHHHhC--CCEECCeEEEEEECC
Confidence 99998653 346899999999543
No 83
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.48 E-value=1.2e-07 Score=87.49 Aligned_cols=79 Identities=14% Similarity=0.054 Sum_probs=65.5
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-.++|+|+|+|..++.++|+++|+. .|.|..|++..+ +..++++++|||+|.+++.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~~~~~---------------------~~~g~~~g~afV~f~~~~~a 70 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKY---------------------NEKGMPTGEAMVAFESRDEA 70 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTT-SCBCTTCCEEEE---------------------CTTSCEEEEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEe---------------------CCCCCEeeEEEEEECCHHHH
Confidence 34589999999999999999999987 787766666654 34578999999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeec
Q 041430 90 TRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
..|+.... ...++|+.|+|..
T Consensus 71 ~~Ai~~l~--g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 71 TAAVIDLN--DRPIGSRKVKLSG 91 (95)
T ss_dssp HHHHHHHT--TCEETTEECEEEC
T ss_pred HHHHHHhC--CCeECCcEEEEEe
Confidence 99998543 3478999999984
No 84
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=2.4e-07 Score=89.14 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=66.0
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-..+|+|+|+|..++.+||++||+.. .|..|+|..+ + .++++++|||+|++.+.|.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~--~v~~v~i~~d---------------------~-~g~~~G~afV~F~~~~~a~ 70 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL--RVDAVHLLKD---------------------H-VGRNNGNGLVKFLSPQDTF 70 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS--CCCEEEECCC---------------------T-TCCCCSEEEEECSSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC--CeeEEEEEEC---------------------C-CCCCCeEEEEEECCHHHHH
Confidence 35799999999999999999999996 5778888765 2 3789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGPE 115 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~~ 115 (1197)
.|+.+- .-.++|++|+|..+..
T Consensus 71 ~Al~~~---~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 71 EALKRN---RMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHHTT---TEEETTEEEEEEECCH
T ss_pred HHHhcC---CCeECCeEEEEEECCc
Confidence 999653 4589999999986543
No 85
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=5.2e-07 Score=85.68 Aligned_cols=80 Identities=11% Similarity=0.098 Sum_probs=68.0
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-.++|+|+|+|..++.++|+++|+. .|.|..|++.. .+++|||+|++.++|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~-fG~v~~v~i~~---------------------------~kg~aFVef~~~~~A 64 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLP-FGKVTNILMLK---------------------------GKNQAFLELATEEAA 64 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEET---------------------------TTTEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEC---------------------------CCCEEEEEECCHHHH
Confidence 35689999999999999999999998 89999887763 278999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecCCCCC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
..|+.....+.+.++|++|+|..+....
T Consensus 65 ~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 65 ITMVNYYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp HHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred HHHHHHhccCCceECCcEEEEEEcCccc
Confidence 9999875434578999999999655444
No 86
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.47 E-value=4.1e-07 Score=92.89 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=68.5
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccc--cEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVG--GVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G--~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
-.++|+|+|+|..++.++|+++|+. +| .|..|+|..+ ..++++++||||+|.+.++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d---------------------~~tg~skGfaFV~f~~~~~ 111 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRS-IGVYDVVELKFAEN---------------------RANGQSKGYAEVVVASENS 111 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEEC---------------------TTTCCEEEEEEEEESCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HCCccEEEEEEEec---------------------CCCCccceEEEEEECCHHH
Confidence 3579999999999999999999976 89 8999999876 4468899999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|..|+.... ...++|+.|+|..+
T Consensus 112 A~~Ai~~ln--g~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 112 VHKLLELLP--GKVLNGEKVDVRPA 134 (156)
T ss_dssp HHHHHHHST--TCEETTEECEEEEC
T ss_pred HHHHHHHcC--CCEECCeEeEEEEc
Confidence 999999864 34789999999943
No 87
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.47 E-value=2.6e-07 Score=91.20 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=68.8
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|+++|+. +|.|..|+|..+ ..+++++++|||+|.+.++|.
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d---------------------~~tg~~~G~afV~F~~~~~A~ 102 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYD---------------------QQSRRSRGFAFVYFENVDDAK 102 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTT-TSCEEEEEEECC---------------------SSSSCCCCEEEEEESCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEec---------------------CCCCccceEEEEEECCHHHHH
Confidence 5689999999999999999999987 899999999876 345789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeec
Q 041430 91 RAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
.|+.... ...++|+.|+|..
T Consensus 103 ~Ai~~ln--g~~i~g~~l~V~~ 122 (129)
T 2kxn_B 103 EAKERAN--GMELDGRRIRVDF 122 (129)
T ss_dssp HHHHHHT--TCCSSSSCCEESC
T ss_pred HHHHHhC--CCEECCEEEEEEE
Confidence 9999654 3478999999984
No 88
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=2.7e-07 Score=84.71 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=65.9
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-.++|+|+|+|..++.++|+++|+.. .|..|+|..+ ..++++++|||+|.+.++|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~--~i~~v~i~~~----------------------~~g~~~g~afV~f~~~~~a 63 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL--KPVAIRIVRN----------------------AHGNKTGYIFVDFSNEEEV 63 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS--CCSEEEEEEC----------------------TTSCEEEEEEEECSSHHHH
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC--CceEEEEEEC----------------------CCCCCceEEEEEECCHHHH
Confidence 356899999999999999999999997 5777888763 2468899999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
..|+. .. ...++|++|+|..+
T Consensus 64 ~~A~~-~~--g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 64 KQALK-CN--REYMGGRYIEVFRE 84 (91)
T ss_dssp HHHHH-SC--SEEETTEEEEEEEE
T ss_pred HHHHH-hC--CceeCCcEEEEEEC
Confidence 99999 32 45889999999854
No 89
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=1.8e-07 Score=88.63 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=66.6
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
....++|+|+|+|..++.+||++||+. +|.| .|+|..+ + .++++++|||+|++.+.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~~-~v~i~~d---------------------~-~g~~~G~afV~F~~~~~ 67 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSP-LNPM-RVHIEIG---------------------P-DGRVTGEADVEFATHED 67 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCS-CCCS-EEEEEES---------------------S-SSCEEEEEEEECSSSHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-cCce-EEEEEEC---------------------C-CCCEeeEEEEEECCHHH
Confidence 345689999999999999999999998 7866 8888875 2 57899999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|..|+.+- ...+++++|+|..+
T Consensus 68 a~~Al~~~---~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 68 AVAAMAKD---KANMQHRYVELFLN 89 (102)
T ss_dssp HHHHHTTS---SCCSSSSCCEEEEE
T ss_pred HHHHHHhC---CCeECCcEEEEEEC
Confidence 99999652 45889999999853
No 90
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=3.6e-07 Score=86.39 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=67.9
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEE-EEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWR-CRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
.-..+|+|+|+|..++.++|++||+. +|.|.. ++|..+ .+++++++|||+|.+++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~v~i~~~----------------------~~g~~~G~afV~F~~~~~ 69 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSG-LEIVPNGMTLPVD----------------------FQGRSTGEAFVQFASQEI 69 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTT-CCEEEEEEECCBC----------------------SSSCBCSEEEEEESSHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCcceeEEEEEC----------------------CCCCcceEEEEEECCHHH
Confidence 45689999999999999999999998 788765 776553 357899999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecCCCCC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
|..|+.. . .-.++|++++|..+....
T Consensus 70 a~~A~~~-~--~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 70 AEKALKK-H--KERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp HHHHHTT-T--TCCSSSSCCEEEEECTTT
T ss_pred HHHHHHh-C--cchhCCcEEEEEECCHHH
Confidence 9999998 3 347899999998654433
No 91
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.46 E-value=4.5e-07 Score=88.16 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=70.8
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
...++|+|+|+|..++.++|+++|+. +|.|..|+|..+ . .++++++|||+|.+.++|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~---------------------~-~g~~~g~afV~f~~~~~A 89 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYD---------------------R-SGRSLGTADVHFERRADA 89 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHT-TSCCSEEEEECC---------------------S-SSSCCSEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEC---------------------C-CCCEeeEEEEEECCHHHH
Confidence 35689999999999999999999988 899999999875 2 578999999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecCCCCC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
..|+.... ...++|+.|+|..+....
T Consensus 90 ~~Ai~~l~--g~~~~g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 90 LKAMKQYK--GVPLDGRPMDIQLVASQI 115 (124)
T ss_dssp HHHHHHHT--TEESSSCEEEEEEECCTT
T ss_pred HHHHHHcC--CCEECCcEEEEEEeCCCC
Confidence 99999553 347899999999644433
No 92
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.45 E-value=4.4e-07 Score=86.87 Aligned_cols=87 Identities=20% Similarity=0.383 Sum_probs=70.7
Q ss_pred cccccccEEEEeCCCccccHHHHH---HHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEe
Q 041430 7 EKLLVDAQVSFGGFDRNVKAAELV---KYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHF 83 (1197)
Q Consensus 7 ~~~~~~~~i~v~gf~~~~~a~~l~---~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F 83 (1197)
.+....++|+|+|+|..++.++|+ ++|+. .|.|..|+|..+- ...+..+++++|||+|
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~-~G~i~~v~i~~~~------------------~~~~~~~~~G~afV~f 70 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGK-FGKIHKVVINNST------------------SYAGSQGPSASAYVTY 70 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTT-TSCEEEEEEECCS------------------SCCSSSCCCEEEEEEE
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhc-cCCEEEEEEecCC------------------CcCccCCCCeEEEEEE
Confidence 344567899999999999999999 99987 8999999997650 0122356789999999
Q ss_pred cChHHHHHHHHhccCCceeecCeeeeeecCC
Q 041430 84 AMPTYVTRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 84 ~~~~~a~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
.+.++|..|+.... ...++|+.|+|..+.
T Consensus 71 ~~~~~A~~Ai~~ln--g~~~~gr~l~V~~a~ 99 (111)
T 2cpi_A 71 IRSEDALRAIQCVN--NVVVDGRTLKASLGT 99 (111)
T ss_dssp SSHHHHHHHHHHHT--TEEETTEEEEEESCC
T ss_pred CcHHHHHHHHHHhC--CCEECCEEEEEEecc
Confidence 99999999999754 346899999999543
No 93
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.45 E-value=4.1e-07 Score=84.14 Aligned_cols=81 Identities=12% Similarity=0.154 Sum_probs=67.2
Q ss_pred ccccccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEe
Q 041430 4 EGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHF 83 (1197)
Q Consensus 4 ~~~~~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F 83 (1197)
....++.-.++|+|+|+|..++.++|+++|+. +|.|..+ +. .++++++|||+|
T Consensus 8 ~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~-~g~v~~~--~~------------------------~~~~~g~afV~f 60 (96)
T 1fjc_A 8 CTSKKVRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV--SQ------------------------DGKSKGIAYIEF 60 (96)
T ss_dssp TTTSTTTGGGEEEEESCCSSCCHHHHHHHHCS-EEEECCE--EE------------------------TTEEEEEEEEEE
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHhh-CCcEEEe--CC------------------------CCCcceEEEEEE
Confidence 34455667899999999999999999999998 5776655 22 367999999999
Q ss_pred cChHHHHHHHHhccCCceeecCeeeeeecC
Q 041430 84 AMPTYVTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 84 ~~~~~a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
.+.++|..|+.... ...++|+.|+|..+
T Consensus 61 ~~~~~a~~A~~~l~--g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 61 KSEADAEKNLEEKQ--GAEIDGRSVSLYYT 88 (96)
T ss_dssp SSHHHHHHHHHHTT--EEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHHhC--CCEECCeEEEEEEc
Confidence 99999999999653 35789999999953
No 94
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.44 E-value=5.9e-07 Score=85.72 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=67.6
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
...++|+|+|+|..++.++|+++|+. .|.|..|++.. .+++|||+|++.++|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~-fG~V~~v~i~~---------------------------~kg~aFVef~~~~~A 64 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEK-FGTICYVMMMP---------------------------FKRQALVEFENIDSA 64 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTT-TSCEEEEEEET---------------------------TTTEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEC---------------------------CCCEEEEEECCHHHH
Confidence 45789999999999999999999998 89999988763 268999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecCCCCC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
..|+.......+.++|++|+|..+....
T Consensus 65 ~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 65 KECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp HHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred HHHHHHhccCCceECCEEEEEEEccCcc
Confidence 9999865444678999999999654433
No 95
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.44 E-value=5.4e-07 Score=86.26 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=66.0
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
..++|+|+|+|..++.++|.++|+. .|.|..|+|..+ ++++++|||+|.+.++|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~------------------------~~~~g~afV~f~~~~~A~ 61 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGK-YGPIRQIRVGNT------------------------PETRGTAYVVYEDIFDAK 61 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEECS------------------------TTTTTCEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC------------------------CCCCcEEEEEECCHHHHH
Confidence 5689999999999999999999987 899999999864 456899999999999999
Q ss_pred HHHHhccCCceeecCeeeeeec
Q 041430 91 RAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
.|+.... ...++|+.|+|..
T Consensus 62 ~A~~~l~--g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 62 NAVDHLS--GFNVSNRYLVVLY 81 (115)
T ss_dssp HHHHHHT--TCBSSSCBCEEEE
T ss_pred HHHHHcC--CCEECCeEEEEEE
Confidence 9999653 2367999999985
No 96
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=9.8e-07 Score=82.11 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=64.9
Q ss_pred cccEEEEeCCCccccHHHHH----HHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecCh
Q 041430 11 VDAQVSFGGFDRNVKAAELV----KYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMP 86 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~----~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~ 86 (1197)
-.++|+|+|+|..++.++|+ ++|+. .|.|..|+|..+ .. . ++||||+|.+.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~-~G~v~~v~i~~~---------------------~~--~-rg~afV~f~~~ 62 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFAR-HGKVKSVELSPH---------------------TD--Y-QLKAVVQMENL 62 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECSC---------------------CS--T-TCCEEEEESSH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccc-cCcEEEEEEEeC---------------------CC--C-CeEEEEEECCH
Confidence 45789999999999999999 88876 799999999875 21 2 78999999999
Q ss_pred HHHHHHHHhccCCceeecCeeeeeecC
Q 041430 87 TYVTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 87 ~~a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
++|..|+.... ...++|+.|+|..+
T Consensus 63 ~~A~~Ai~~l~--g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 63 QDAIGAVNSLH--RYKIGSKKILVSLA 87 (96)
T ss_dssp HHHHHHHHHHT--TEEETTEEEEEEEC
T ss_pred HHHHHHHHHhC--CCEECCeEEEEEEc
Confidence 99999999654 34789999999954
No 97
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.43 E-value=2.8e-07 Score=89.41 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=67.0
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhcccc---EEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGG---VWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~---v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
-.++|+|+|+|..++.+||++||+. +|. |..|+|..+ . .++++++|||+|.+.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~---------------------~-~g~~~G~afV~F~~~~ 72 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYT---------------------R-EGRQSGEAFVELESED 72 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEEC---------------------S-SSCEEEEEEEEBSSHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCccCceeEEEEEC---------------------C-CCCCCeEEEEEECCHH
Confidence 4688999999999999999999998 676 788888875 3 3789999999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeecC
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
+|..|+.+- ...++|++|+|..+
T Consensus 73 ~a~~Al~~~---g~~~~gr~i~V~~a 95 (118)
T 2db1_A 73 DVKLALKKD---RESMGHRYIEVFKS 95 (118)
T ss_dssp HHHHHGGGT---TEEETTEEEEEEEE
T ss_pred HHHHHHhcC---CCeECCeEEEEEEC
Confidence 999999953 46899999999854
No 98
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.42 E-value=7.1e-07 Score=90.23 Aligned_cols=79 Identities=9% Similarity=0.132 Sum_probs=69.4
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
..++|+|+|+|..++.++|+++|+. +|.|..|+|..+ ..+++++++|||+|.+.++|.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~A~ 95 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSK-SGDIKKIIMGLD---------------------KMKKTACGFCFVEYYSRADAE 95 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEec---------------------CCCCccceEEEEEECCHHHHH
Confidence 5689999999999999999999987 899999999886 335779999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
.|+.... ...++|+.|+|..+
T Consensus 96 ~Ai~~l~--g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 96 NAMRYIN--GTRLDDRIIRTDWD 116 (156)
T ss_dssp HHHHHTT--TSEETTEECEEEEE
T ss_pred HHHHHhC--CCEECCeEEEEEEC
Confidence 9999653 34779999999954
No 99
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.42 E-value=2.7e-07 Score=91.77 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=68.8
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ ..++++++||||+|.+.++|.
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~G~afV~F~~~~~A~ 103 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEK-YGRVGDVYIPRD---------------------RYTKESRGFAFVRFHDKRDAE 103 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGG-GSCCSEEECCCC---------------------SSSSSCCSCCEEECSCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEec---------------------CCCCccceEEEEEECCHHHHH
Confidence 5679999999999999999999988 899999988765 335789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
.|+.... ...++|+.|+|..+.
T Consensus 104 ~Ai~~l~--g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 104 DAMDAMD--GAVLDGRELRVQMAR 125 (135)
T ss_dssp HHHTTTT--TCCSSSSCCEEEECC
T ss_pred HHHHHcC--CCEECCEEEEEEECC
Confidence 9998654 236899999999543
No 100
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.42 E-value=2.7e-07 Score=85.41 Aligned_cols=80 Identities=15% Similarity=0.262 Sum_probs=66.4
Q ss_pred cccEEEEeCCCccccHHHHH----HHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecCh
Q 041430 11 VDAQVSFGGFDRNVKAAELV----KYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMP 86 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~----~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~ 86 (1197)
-.++|+|+|+|..++.++|. ++|+. .|.|..|++... ++++++|||+|.+.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~-~G~i~~v~i~~~------------------------~~~~g~afV~f~~~ 61 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSR-FGQILDILVSRS------------------------LKMRGQAFVIFKEV 61 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGG-GSCEEEEECCHH------------------------HHHTTCEEEEESSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-CCCEEEEEEEcC------------------------CCcCcEEEEEeCCH
Confidence 56899999999999999999 78876 789998888642 57889999999999
Q ss_pred HHHHHHHHhccCCceeecCeeeeeecCCCCC
Q 041430 87 TYVTRAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 87 ~~a~~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
++|..|+..... ..++|+.|+|..+...+
T Consensus 62 ~~A~~A~~~l~g--~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 62 SSATNALRSMQG--FPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp HHHHHHHHHHTT--CEETTEECEEEECSSCC
T ss_pred HHHHHHHHHhCC--CEECCcEEEEEEccCCC
Confidence 999999986432 36799999999644433
No 101
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.41 E-value=3.4e-07 Score=90.51 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=65.3
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEE-EEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVW-RCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
..++|+|+|+|..++.++|++||+.. |.+. .|+|..+ +. ++++++|||+|+++++|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d---------------------~~-GrsrGfaFV~F~~~e~A 97 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVD---------------------PE-GKITGEAFVQFASQELA 97 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCC---------------------SS-SSSCSEEEEEESSTTHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEEC---------------------CC-CCCceEEEEEECCHHHH
Confidence 56789999999999999999999997 6442 7888775 33 78999999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
..|+.+-+ -.++|++|+|..+
T Consensus 98 ~~Al~~~~---~~l~gR~I~V~~a 118 (126)
T 2hgm_A 98 EKALGKHK---ERIGHRYIEVFKS 118 (126)
T ss_dssp HHHHTTTT---CCBTTBCCCCEEE
T ss_pred HHHHHHCC---CEECCEEEEEEEC
Confidence 99998643 4789999999853
No 102
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.41 E-value=9.4e-07 Score=88.40 Aligned_cols=79 Identities=18% Similarity=0.301 Sum_probs=68.6
Q ss_pred ccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHHH
Q 041430 12 DAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTR 91 (1197)
Q Consensus 12 ~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~~ 91 (1197)
.++|+|+|+|..++.++|.++|+. .|.|..|++..+ +..++++++|||+|.++++|..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~~~~~---------------------~~~~~~~g~afV~f~~~~~A~~ 59 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGS-IGEIESCKLVRD---------------------KITGQSLGYGFVNYIDPKDAEK 59 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEeC---------------------CCCCcceeEEEEEECCHHHHHH
Confidence 479999999999999999999997 899999999886 3357899999999999999999
Q ss_pred HHHhccCCceeecCeeeeeecCC
Q 041430 92 AVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 92 a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
|+.... ...++|++|+|..+.
T Consensus 60 a~~~l~--~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 60 AINTLN--GLRLQTKTIKVSYAR 80 (167)
T ss_dssp HHHHHT--TCEETTEECEEEECC
T ss_pred HHHHcC--CCccCCceEEEEecC
Confidence 998543 347899999998543
No 103
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=9.8e-07 Score=79.64 Aligned_cols=76 Identities=20% Similarity=0.296 Sum_probs=64.8
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
.+.-.++|+|+|+|..++.++|+++|+. .|.|..|++.. ++++|||+|.+.+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~-~G~i~~~~~~~---------------------------~kg~afV~f~~~~ 59 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQ-FGEIRTITVVQ---------------------------RQQCAFIQFATRQ 59 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHT-TSCEEEEEEEG---------------------------GGTEEEEEESSHH
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHh-CCCEeEEEEEC---------------------------CCCEEEEEECCHH
Confidence 3456789999999999999999999987 79999998874 3589999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeec
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
+|..|+....+ ...++|+.|+|..
T Consensus 60 ~A~~a~~~l~~-~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 60 AAEVAAEKSFN-KLIVNGRRLNVKW 83 (85)
T ss_dssp HHHHHHHTTTT-TCEETTEECCEEE
T ss_pred HHHHHHHHhcC-CeeECCCEEEEEe
Confidence 99999995422 4578999999874
No 104
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.40 E-value=2.4e-07 Score=86.12 Aligned_cols=80 Identities=15% Similarity=0.101 Sum_probs=66.1
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-.++|+|+|+|..++.++|+++|+. .|.|..|++... +..++++++|||+|.+.+.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~~~~~~~---------------------~~~g~~~g~afV~f~~~~~a 70 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKY---------------------NEKGMPTGEAMVAFESRDEA 70 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTT-SCCCTTTCEEEE---------------------CSSSCEEEEEEEEESCHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccceEEEEE---------------------CCCCCeeeEEEEEECCHHHH
Confidence 35689999999999999999999987 687665555554 34578999999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
..|+.... ...++|+.|+|..+
T Consensus 71 ~~Ai~~l~--g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 71 TAAVIDLN--DRPIGSRKVKLVLG 92 (98)
T ss_dssp HHHHHHTT--TCEETTEECEEEES
T ss_pred HHHHHHhC--CCeeCCeEEEEEEc
Confidence 99997654 24789999999853
No 105
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.39 E-value=2.7e-07 Score=92.32 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=67.5
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhcccc---EEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGG---VWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~---v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
-.++|+|+|+|..++.+||++||+. +|. |..|+|..+ +. ++++++|||+|++.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d---------------------~~-g~srG~aFV~F~~~e 99 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYT---------------------RE-GRQSGEAFVELGSED 99 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEEC---------------------SS-SCEEEEEEEECSSHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEEC---------------------CC-CCCCeEEEEEECCHH
Confidence 4678999999999999999999998 787 788888875 33 789999999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeecC
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
+|..|+.+- ...++|++|+|..+
T Consensus 100 ~a~~Al~~~---g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 100 DVKMALKKD---RESMGHRYIEVFKS 122 (136)
T ss_dssp HHHHHHTTT---EEESSSSEEEEEEC
T ss_pred HHHHHHhcC---CCEECCEEEEEEEC
Confidence 999999943 45899999999854
No 106
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=1.9e-06 Score=79.62 Aligned_cols=80 Identities=21% Similarity=0.207 Sum_probs=63.2
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
+..-.++|+|+|+|..++.++|+++|+. .|.|..| +... ..++ ||||+|.+.+
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~v-~~~~----------------------~~g~---~afV~f~~~~ 56 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLA-FGPVASV-VMDK----------------------DKGV---FAIVEMGDVG 56 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGG-TSCEEEE-EECS----------------------SSCC---EEEEEESSHH
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEE-EEcC----------------------CCCc---EEEEEECCHH
Confidence 3445689999999999999999999997 8998877 2221 1222 9999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeecCCCCC
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
+|..|+.+- ...++|+.|+|..+....
T Consensus 57 ~a~~ai~l~---g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 57 AREAVLSQS---QHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp HHHHHHTCS---CCEETTEECCCBCSCCSC
T ss_pred HHHHHHhcC---CeEECCEEEEEEECCcCC
Confidence 999999933 457899999999654333
No 107
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=5.1e-07 Score=88.46 Aligned_cols=81 Identities=11% Similarity=0.139 Sum_probs=67.9
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +++|||+|++.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~-fG~V~~v~i~~~---------------------------kG~AFVeF~~~e~ 79 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG---------------------------KNQAFIEMNTEEA 79 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTT-TSCCCEEEEEGG---------------------------GTEEEEECSCHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeCC---------------------------CCEEEEEECCHHH
Confidence 345789999999999999999999987 899999988752 6899999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecCCCCC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
|..|+.........++|++|+|..+...+
T Consensus 80 A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 80 ANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp HHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred HHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 99999865432467999999999654443
No 108
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.36 E-value=6.5e-07 Score=86.52 Aligned_cols=76 Identities=8% Similarity=0.128 Sum_probs=65.0
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccc-cEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVG-GVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G-~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
-..+|+|+|+|..++.++|+++|+. +| .|..|+|.+. ++++||||+|++.+.|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~-~G~~v~~v~i~~~-------------------------~~rGfaFV~F~~~e~A 80 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARE-NSLETTFSSVNTR-------------------------DFDGTGALEFPSEEIL 80 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHH-HTCCCSEEECSSC-------------------------SSSCCEEEEESSHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-hCCeeEEEEEEcC-------------------------CCCCEEEEEECCHHHH
Confidence 4579999999999999999999998 68 7888877542 4789999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecCC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
..|+.... ...++|+.|+|..+.
T Consensus 81 ~~Ai~~ln--g~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 81 VEALERLN--NIEFRGSVITVERDD 103 (111)
T ss_dssp HHHHHHTT--TEEETTEEEEEEESC
T ss_pred HHHHHHcC--CCEECCeEEEEEECC
Confidence 99998653 457899999999543
No 109
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.36 E-value=9.9e-07 Score=88.65 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=67.9
Q ss_pred ccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHHH
Q 041430 12 DAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTR 91 (1197)
Q Consensus 12 ~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~~ 91 (1197)
.++|+|+|+|..++.++|.++|+. .|.|..|++..+ +..++++++|||+|.++++|..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~---------------------~~~~~~~g~afV~f~~~~~A~~ 60 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRA-IGPINTCRIMRD---------------------YKTGYSYGYAFVDFTSEMDSQR 60 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEE---------------------TTTTEECSEEEEEESSHHHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEe---------------------CCCCccceEEEEEECCHHHHHH
Confidence 479999999999999999999988 899999999875 3357899999999999999999
Q ss_pred HHHhccCCceeecCeeeeeecC
Q 041430 92 AVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 92 a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|+.... ...++|+.|+|..+
T Consensus 61 a~~~l~--~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 61 AIKVLN--GITVRNKRLKVSYA 80 (168)
T ss_dssp HHHHHT--TCEETTEECEEEEC
T ss_pred HHHhcC--CCEeCCcEEEEEec
Confidence 998543 34789999999854
No 110
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=7.6e-07 Score=82.83 Aligned_cols=76 Identities=26% Similarity=0.368 Sum_probs=64.2
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
+....++|+|+|+|..++.++|+++|+. .|.|. |++.+. ++++||||+|.+.+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~-~G~v~-~~~~~~-------------------------~~~g~afV~f~~~~ 67 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRE-LGSVP-LRLTWQ-------------------------GPRRRAFLHYPDSA 67 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHH-TTCCC-SEEEEE-------------------------TTTTEEEEECSSHH
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHh-cCCEE-EEEEcC-------------------------CCCcEEEEEECCHH
Confidence 3446789999999999999999999997 78875 666653 68899999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeec
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
+|..|+.... ...++|+.|+|..
T Consensus 68 ~a~~A~~~l~--g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 68 AAQQAVSCLQ--GLRLGTDTLRVAL 90 (97)
T ss_dssp HHHHHHHHHT--TCCSSSSCCEEEE
T ss_pred HHHHHHHHhC--CCEECCcEEEEEE
Confidence 9999997654 3468999999984
No 111
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.35 E-value=8.5e-07 Score=89.21 Aligned_cols=75 Identities=17% Similarity=0.363 Sum_probs=66.4
Q ss_pred ccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHHH
Q 041430 12 DAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTR 91 (1197)
Q Consensus 12 ~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~~ 91 (1197)
.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ +.+++++++|||+|.++++|..
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~a~~ 60 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGK-YGTVTDLKIMKD---------------------PATGRSRGFGFLSFEKPSSVDE 60 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTT-TCCEEEEECCCC---------------------TTTSSCCSCEEEEESSTHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEEC---------------------CCCCCccceEEEEEccHHHHHH
Confidence 579999999999999999999988 899999998875 3457899999999999999999
Q ss_pred HHHhccCCceeecCeeeeeec
Q 041430 92 AVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 92 a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
|+.. + ..++|+.|++..
T Consensus 61 A~~~-~---~~~~g~~i~v~~ 77 (167)
T 2cjk_A 61 VVKT-Q---HILDGKVIDPKR 77 (167)
T ss_dssp HHHS-C---CEETTEECCCEE
T ss_pred HHhc-c---cccCCeEccccc
Confidence 9984 2 378999999884
No 112
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.35 E-value=1.2e-06 Score=89.71 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=69.9
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|... ..++++++||||+|.+.++|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~A 127 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLD---------------------RRTGFSKGYALVEYETHKQA 127 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------TTTSSEEEEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhc-CCCEEEEEEEec---------------------CCCCcEeeEEEEEECCHHHH
Confidence 34678999999999999999999987 799999999886 34678999999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecCCC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLGPE 115 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~~~ 115 (1197)
..|+.... ...|+|+.|+|..+..
T Consensus 128 ~~Ai~~l~--g~~~~g~~l~V~~a~~ 151 (165)
T 1rk8_A 128 LAAKEALN--GAEIMGQTIQVDWCFV 151 (165)
T ss_dssp HHHHHHHT--TCEETTEECEEEESEE
T ss_pred HHHHHHhC--CCEECCEEEEEEEecC
Confidence 99998654 3478999999986433
No 113
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.35 E-value=1.3e-06 Score=79.06 Aligned_cols=71 Identities=15% Similarity=0.353 Sum_probs=60.5
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhcc---c-------cEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEE
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEV---G-------GVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAF 80 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~---G-------~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 80 (1197)
-.++|+|+|+|..++.++|+++|++.. | .|..|++.. +++|||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~---------------------------~kg~af 57 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---------------------------DKNFAF 57 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS---------------------------SSSEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC---------------------------CCcEEE
Confidence 468999999999999999999999863 7 788877753 368999
Q ss_pred EEecChHHHHHHHHhccCCceeecCeeeeee
Q 041430 81 VHFAMPTYVTRAVDAAGRTELFLNGRALKVS 111 (1197)
Q Consensus 81 V~F~~~~~a~~a~~~a~~~~l~~~~~~lkv~ 111 (1197)
|+|.+.++|..|+.+- ...++|+.|+|+
T Consensus 58 V~f~~~~~a~~A~~l~---g~~~~g~~l~V~ 85 (87)
T 2hzc_A 58 LEFRSVDETTQAMAFD---GIIFQGQSLKIR 85 (87)
T ss_dssp EEESSHHHHHHHGGGT---TCEETTEECEEE
T ss_pred EEcCCHHHHHHHHhcC---CCEECCeEEEEe
Confidence 9999999999999333 347899999998
No 114
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.2e-06 Score=87.58 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=65.2
Q ss_pred cEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHHHH
Q 041430 13 AQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRA 92 (1197)
Q Consensus 13 ~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a 92 (1197)
+||+|+|+|.+++.++|.++|+. .|.|..|+|..+ +.++++++|||+|.+.++|..|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~----------------------~~~~~~g~afV~f~~~~~a~~A 57 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQV-GGPIANIKIMID----------------------KNNKNVNYAFVEYHQSHDANIA 57 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGG-GSCEEEEEEECC----------------------CC-CCEEEEEEEESSHHHHHHH
T ss_pred CEEEECCCCCcCCHHHHHHHHHh-cCCeEEEEEEEC----------------------CCCCCCCEEEEEeCCHHHHHHH
Confidence 58999999999999999999997 799999999875 2356899999999999999999
Q ss_pred HHhccCCceeecCeeeeeecC
Q 041430 93 VDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 93 ~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
+.... ...++|+.|+|..+
T Consensus 58 ~~~l~--~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 58 LQTLN--GKQIENNIVKINWA 76 (166)
T ss_dssp HHHHT--TCEETTEECEEEEC
T ss_pred HHHcC--CCccCCCeeEEEEc
Confidence 95543 23789999999854
No 115
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.34 E-value=1.5e-06 Score=92.23 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=69.6
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.+||+|+|+|.+++.++|+++|+. +|.|..|+|..+ ..+++++++|||+|.+.++|.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~d---------------------~~tg~~~G~afV~F~~~~~A~ 71 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSP-AGPILSIRVCRD---------------------MITRRSLGYAYVNFQQPADAE 71 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-hCCEEEEEEecc---------------------cCCCCccccccceeCCHHHHH
Confidence 4579999999999999999999987 899999999886 345789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGPE 115 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~~ 115 (1197)
.|+.... ...++|+.+++..+..
T Consensus 72 ~Ai~~~~--~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 72 RALDTMN--FDVIKGKPVRIMWSQR 94 (213)
T ss_dssp HHHHHHT--TCEETTEECEEEECCC
T ss_pred HHHHHhh--hhhcCCcccccccccc
Confidence 9998764 3478999999985433
No 116
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.33 E-value=7.3e-07 Score=83.36 Aligned_cols=75 Identities=20% Similarity=0.264 Sum_probs=63.7
Q ss_pred cEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHHHH
Q 041430 13 AQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRA 92 (1197)
Q Consensus 13 ~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a 92 (1197)
++|+|+|+|..++.++|+++|+. .|.|..|++..+ ++++|||+|.+.++|..|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~--------------------------~~g~afV~f~~~~~a~~A 53 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSY-YGPLRTVWIARN--------------------------PPGFAFVEFEDPRDAEDA 53 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHH-HCCCSEEEEESS--------------------------SSSEEEEECSSHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC--------------------------CCCEEEEEECCHHHHHHH
Confidence 58999999999999999999987 799888888751 788999999999999999
Q ss_pred HHhccCCceeecCeeeeeecCCCC
Q 041430 93 VDAAGRTELFLNGRALKVSLGPEN 116 (1197)
Q Consensus 93 ~~~a~~~~l~~~~~~lkv~~~~~~ 116 (1197)
+..... ..++|+.|+|..+...
T Consensus 54 ~~~l~g--~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 54 VRGLDG--KVICGSRVRVELSTGM 75 (101)
T ss_dssp HHHHHH--SCSSSCCCEEEESSSC
T ss_pred HHHHCC--CeECCcEEEEEEccCC
Confidence 996432 2689999999964443
No 117
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.33 E-value=1.3e-06 Score=80.56 Aligned_cols=74 Identities=22% Similarity=0.336 Sum_probs=60.4
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
...-.++++|+|+|..++.++|.++|+. .|.|..|+|.. .+++||||+|.+++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~-~G~i~~v~i~~--------------------------~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQ-YGEVVDVFIPK--------------------------PFRAFAFVTFADDK 59 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCS--------------------------SCCSEEEEEESCHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEee--------------------------CCCCEEEEEECCHH
Confidence 3456789999999999999999999997 89999998875 27899999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeec
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
+|.. + -+. .+.++|+.|+|..
T Consensus 60 ~A~~-~--~~~-~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 60 VAQS-L--CGE-DLIIKGISVHISN 80 (89)
T ss_dssp HHHH-H--TTC-EEEETTEEEEEEE
T ss_pred HHHH-H--cCC-CcccCCEEEEEEE
Confidence 9983 2 222 6678899999984
No 118
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=2.1e-06 Score=78.54 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=63.5
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..-.++|+|+|+|..++.++|+++|+. .|.|..|++. +++|||+|.+.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~-----------------------------~g~afV~f~~~~~ 54 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQ-YGKVLECDII-----------------------------KNYGFVHIEDKTA 54 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHT-SSCEEEEEEE-----------------------------TTEEEEEESSHHH
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEE-----------------------------CCEEEEEECCHHH
Confidence 346789999999999999999999998 7999888875 3599999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecCC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
|..|+.... ...++|+.|+|..+.
T Consensus 55 A~~A~~~l~--g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 55 AEDAIRNLH--HYKLHGVNINVEASK 78 (90)
T ss_dssp HHHHHHHHT--TCBCSSCBCEEECSS
T ss_pred HHHHHHHhc--CCccCCcEEEEEECC
Confidence 999998654 347899999999543
No 119
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.32 E-value=2.4e-06 Score=85.40 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=69.6
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
....++|.|+|+|..++.++|+++|+. .|.|..+++..+ +.+++++++|||+|.+.++
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~---------------------~~~~~~~g~afV~f~~~~~ 141 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWD---------------------MQTGSSRGYGFVSFTSQDD 141 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTT-STTEEEEEEEEC---------------------TTTCCEEEEEEEEESCHHH
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhc-cCCeeEEEEEec---------------------CCCCCcceEEEEEeCCHHH
Confidence 345779999999999999999999976 899999999876 3457899999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|..|+..... ..++|+.|+|+.+
T Consensus 142 A~~A~~~l~g--~~~~g~~i~v~~a 164 (166)
T 3md3_A 142 AQNAMDSMQG--QDLNGRPLRINWA 164 (166)
T ss_dssp HHHHHHHHTT--CEETTEECEEEES
T ss_pred HHHHHHHhCC--CccCCcEEEEEec
Confidence 9999995532 3689999999853
No 120
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.31 E-value=8.3e-07 Score=84.56 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=65.6
Q ss_pred cccEEEEeCCCc-cccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 11 VDAQVSFGGFDR-NVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 11 ~~~~i~v~gf~~-~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
-.++|+|+|+|. .++.+||.++|+. .|.|..|+|..+ +++|||+|++.++|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~-fG~V~~v~i~~~---------------------------kg~aFVef~~~~~A 65 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEP-FGVISNHLILNK---------------------------INEAFIEMATTEDA 65 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGG-GSCEEEEEECSS---------------------------SSCEEEEESSHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHh-cCCEEEEEEEcC---------------------------CCEEEEEECCHHHH
Confidence 568999999999 9999999999997 799999998753 37999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecCC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
..|+.......+.++|++|+|..+.
T Consensus 66 ~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 66 QAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp HHHHHHHHHSCCEETTEECEEEEEC
T ss_pred HHHHHHHcCCCceECCcEEEEEECC
Confidence 9999875443567899999998543
No 121
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1e-06 Score=87.18 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=67.4
Q ss_pred ccEEEEeCC----CccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecC--
Q 041430 12 DAQVSFGGF----DRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAM-- 85 (1197)
Q Consensus 12 ~~~i~v~gf----~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~-- 85 (1197)
.++|+|||+ |..++..+|++||.+ .|.|-.|++.++ +.+++|++||||.|.+
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~-fGeV~~~~li~D---------------------p~Tg~slGfgfVef~d~~ 59 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKK-YGEISHFEAFND---------------------PNSALPLHVYLIKYASSD 59 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHT-TSCCSEEEEEEC---------------------TTTCCEEEEEEEECC---
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEEEEec---------------------CCCCceeeEEEEEECCCC
Confidence 479999999 999999999999995 999999999998 6789999999999996
Q ss_pred --h-HH---HHHHHHhccCCceeecCeeeeeecCCCC
Q 041430 86 --P-TY---VTRAVDAAGRTELFLNGRALKVSLGPEN 116 (1197)
Q Consensus 86 --~-~~---a~~a~~~a~~~~l~~~~~~lkv~~~~~~ 116 (1197)
+ ++ |..|+.-...+...++|+.|+|.+...+
T Consensus 60 g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 60 GKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHS 96 (136)
T ss_dssp ---CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTT
T ss_pred CCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECccc
Confidence 4 33 4444442233577999999999975443
No 122
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.30 E-value=1.5e-06 Score=89.69 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=68.7
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +.+++++++|||+|.+.++|.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~F~~~~~A~ 160 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQ-YGKIEVIEIMTD---------------------RGSGKKRGFAFVTFDDHDSVD 160 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTT-TSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHHH
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEeec---------------------CCCCCccceEEEEECCHHHHH
Confidence 4579999999999999999999986 899999999886 335789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
.|+... ...++|+.|+|+.+
T Consensus 161 ~A~~~~---~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 161 KIVIQK---YHTVNGHNCEVRKA 180 (196)
T ss_dssp HHHHCS---CCEETTEECEEEEC
T ss_pred HHHHhC---CcEECCEEEEEEec
Confidence 999873 34899999999853
No 123
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.30 E-value=4e-07 Score=85.12 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=61.8
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
..++|+|+|+|..++.++|+++|+. .|.|.. ++..+ ..++++++||||+|.+.++|.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~-~~~~~---------------------~~~g~~~g~afV~f~~~~~a~ 72 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISE-LFAKND-LAVVD---------------------VRTGTNRKFGYVDFESAEDLE 72 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHH-HHHHHT-CCCCE---------------------EEEETTTTEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCcce-EEEec---------------------CCCCCcCcEEEEEECCHHHHH
Confidence 5689999999999999999999998 675543 22221 224689999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
.|+.+- ...++|+.|+|..+
T Consensus 73 ~A~~l~---g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 73 KALELT---GLKVFGNEIKLEKP 92 (101)
T ss_dssp HHHHGG---GCCBTTBCCEEECC
T ss_pred HHHhcC---CcEECCcEEEEEEc
Confidence 999843 34788999999953
No 124
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=2.6e-06 Score=79.61 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=63.5
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
....++|+|+|+|..++.++|+++|+. +|.| ++.. +..++++++|||+|.+.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v---~~~~----------------------~~~g~~~g~afV~f~~~~~ 65 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEK-ATFI---KVPQ----------------------NQNGKSKGYAFIEFASFED 65 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSS-CSEE---ECCB----------------------CSSSCBCSEEEEECSSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCEE---EEEE----------------------CCCCCEeeEEEEEECCHHH
Confidence 346799999999999999999999998 6877 2222 1246789999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|..|+.... ...++|+.|+|..+
T Consensus 66 A~~A~~~l~--g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 66 AKEALNSCN--KREIEGRAIRLELQ 88 (101)
T ss_dssp HHHHHHHTS--SEEETTEEEEEEEC
T ss_pred HHHHHHHhC--CCEeCCeEEEEEEc
Confidence 999999654 35789999999954
No 125
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.30 E-value=1.6e-06 Score=87.52 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=68.8
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
..++|+|+|+|..++.++|.++|+. .|.|..|++..+ +.+++++++|||+|.+.++|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~A~ 150 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKD---------------------SATGLSKGYAFCEYVDINVTD 150 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHT-TSCEEEEEEEEC---------------------TTTCSEEEEEEEEESSTTHHH
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHh-cCCceEEEEEec---------------------CCCCCcceEEEEEeCCHHHHH
Confidence 3689999999999999999999996 899999999876 335789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
.|+.... ...++|+.|+|+.+
T Consensus 151 ~A~~~l~--g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 151 QAIAGLN--GMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHHHT--TCEETTEECEEEEC
T ss_pred HHHHHcC--CCEECCeEEEEEeC
Confidence 9999643 34789999999843
No 126
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.28 E-value=1.8e-06 Score=82.54 Aligned_cols=66 Identities=11% Similarity=0.102 Sum_probs=58.6
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
+.-.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ + .+++++||||+|.+.+.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~---------------------~-~g~~~g~afV~f~~~~~ 78 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKP-FGQVISTRILRD---------------------S-SGTSRGVGFARMESTEK 78 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEEEC---------------------S-SSCEEEEEEEEESCHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEEC---------------------C-CCCcceEEEEEECCHHH
Confidence 345689999999999999999999988 899999999886 2 57899999999999999
Q ss_pred HHHHHHhcc
Q 041430 89 VTRAVDAAG 97 (1197)
Q Consensus 89 a~~a~~~a~ 97 (1197)
|..|+....
T Consensus 79 a~~A~~~l~ 87 (114)
T 1x5o_A 79 CEAVIGHFN 87 (114)
T ss_dssp HHHHHHHHB
T ss_pred HHHHHHHhC
Confidence 999999543
No 127
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=5.3e-07 Score=88.71 Aligned_cols=78 Identities=22% Similarity=0.255 Sum_probs=64.8
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhcc---ccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEV---GGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~---G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
-..+|+|+|+|-.++.+||++||+... |.|..|+|..+ +.++++++|||+|++.+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d----------------------~~gr~~G~aFV~F~~~~ 79 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY----------------------PDGRPTGDAFVLFACEE 79 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC----------------------TTSCEEEEEEECCSSHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC----------------------CCCCEeeEEEEEECCHH
Confidence 357899999999999999999999843 33467777764 25789999999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeecC
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
.|..|+..- .-.+++++|+|..+
T Consensus 80 ~A~~Al~~~---~~~l~gR~i~V~~a 102 (123)
T 2dha_A 80 YAQNALRKH---KDLLGKRYIELFRS 102 (123)
T ss_dssp HHHHHHTTT---TEESSSCEECCEEE
T ss_pred HHHHHHHhC---CCeeCCeEEEEEEC
Confidence 999999862 35789999999753
No 128
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.28 E-value=1.9e-06 Score=90.85 Aligned_cols=77 Identities=17% Similarity=0.301 Sum_probs=67.7
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-.++|+|+|+|..++.++|.++|+. +|.|..|+|... . .+++++||||+|.+.++|
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i~~~---------------------~-~~~~kG~aFVeF~~~e~A 163 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRT---------------------L-HKAFKGSIFVVFDSIESA 163 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTT-SCCEEEEEEEEC---------------------T-TCCEEEEEEEEESSHHHH
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhc-CCCEEEEEEEEC---------------------C-CCCcccEEEEEECCHHHH
Confidence 34689999999999999999999997 899999999875 1 267899999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeec
Q 041430 90 TRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
..|+...+. .++|+.|+|..
T Consensus 164 ~~A~~~~~~---~~~Gr~l~V~~ 183 (193)
T 2voo_A 164 KKFVETPGQ---KYKETDLLILF 183 (193)
T ss_dssp HHHHHCTTC---EETTEECEEEE
T ss_pred HHHHHhCCC---eECCEEEEEEE
Confidence 999987643 79999999983
No 129
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=1.4e-06 Score=81.40 Aligned_cols=79 Identities=14% Similarity=0.212 Sum_probs=63.4
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
+..-.++|+|+|+|..++.++|+++|+.. + .|++... ...+++++||||+|.+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-~---~~~~~~~---------------------~~~~~~~g~afV~f~~~~ 65 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS-V---RARIVTD---------------------RETGSSKGFGFVDFNSEE 65 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC-S---EEEEEEC---------------------SSSCSEEEEEEEECSSHH
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC-e---EEEEEec---------------------CCCCCcCcEEEEEECCHH
Confidence 44567899999999999999999999964 3 3444443 224789999999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeecC
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
+|..|+.... ...++|+.|+|..+
T Consensus 66 ~A~~A~~~l~--g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 66 DAKAAKEAME--DGEIDGNKVTLDWA 89 (102)
T ss_dssp HHHHHHHHHT--TCEETTEECEEEEC
T ss_pred HHHHHHHHhC--CCeECCeEEEEEEe
Confidence 9999998643 24789999999954
No 130
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=3.1e-07 Score=89.55 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=63.9
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|.+||+. +|.|..|.+... +..+++++||||+|++.++|.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~~~~~~---------------------~~~g~~~G~afV~F~~~~~a~ 81 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKK-LDIVEDSIYIAY---------------------GPNGKATGEGFVEFRNEADYK 81 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCS-SCBCTTTCEEEE---------------------CTTSSEEEEEEEEBSSSHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEE---------------------CCCCCCCeEEEEEECCHHHHH
Confidence 4579999999999999999999987 787655333332 235789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
.|+.+- ...++|++|+|..+
T Consensus 82 ~Al~~~---g~~~~gr~i~V~~a 101 (124)
T 1wel_A 82 AALCRH---KQYMGNRFIQVHPI 101 (124)
T ss_dssp HHHTSC---SBCSTTSCBEEEEE
T ss_pred HHHHhC---CCeECCcEEEEEEC
Confidence 999943 45789999999854
No 131
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.27 E-value=1.9e-06 Score=90.26 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=65.7
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
..++|+|+|+|.+++.++|+++|+. +|.|..|+|..+ ...++++++|||+|.+.++|.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~---------------------~~~g~~~g~afV~f~~~~~A~ 84 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAP-FGPIKSIDMSWD---------------------SVTMKHKGFAFVEYEVPEAAQ 84 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEECCC----------------------CC-CCCSEEEEEESSHHHHH
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHh-CCCEEEEEEeec---------------------CCCCccCceEEEEeCCHHHHH
Confidence 4679999999999999999999988 799999999875 334679999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeec
Q 041430 91 RAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
.|+.... ...++|+.|+|..
T Consensus 85 ~A~~~l~--~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 85 LALEQMN--SVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHHHS--SCCCC-CCCEEEC
T ss_pred HHHHHcc--CCeeCCeeEEEec
Confidence 9999543 3478999999984
No 132
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.27 E-value=2.5e-06 Score=89.40 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=69.3
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
..++|+|+|+|..++.++|+++|+. .|.|..|+|... +.+++++++|||+|.+.++|.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~---------------------~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEA-FGKIKSATLARD---------------------PTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTT-SSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHHH
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhc-cCCeeEEEEEec---------------------CCCCCcCceEEEEecCHHHHH
Confidence 4579999999999999999999987 899999999886 335789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
.|+..... ..++|+.|+|..+-
T Consensus 182 ~A~~~l~g--~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 182 DAVSSMNL--FDLGGQYLRVGKAV 203 (216)
T ss_dssp HHHHHHTT--CBCSSSBCEEEECS
T ss_pred HHHHHccC--CEeCCcEEEEEEec
Confidence 99996542 36899999999533
No 133
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.27 E-value=5e-06 Score=78.12 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=64.9
Q ss_pred ccccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecC
Q 041430 6 REKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAM 85 (1197)
Q Consensus 6 ~~~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~ 85 (1197)
+....-.++|+|+|+|..++.++|+++|+. .|.|..|+|. +++|||+|.+
T Consensus 5 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~~~-----------------------------~~~afV~f~~ 54 (103)
T 2dgu_A 5 SSGMAKVKVLFVRNLANTVTEEILEKAFSQ-FGKLERVKKL-----------------------------KDYAFIHFDE 54 (103)
T ss_dssp CCCCCCCCCEEEECCCTTCCHHHHHHHHHH-HSCEEEEEEC-----------------------------SSCEEEEESS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEE-----------------------------CCEEEEEeCC
Confidence 334445789999999999999999999998 7998888764 2399999999
Q ss_pred hHHHHHHHHhccCCceeecCeeeeeecCCCC
Q 041430 86 PTYVTRAVDAAGRTELFLNGRALKVSLGPEN 116 (1197)
Q Consensus 86 ~~~a~~a~~~a~~~~l~~~~~~lkv~~~~~~ 116 (1197)
.++|..|+.... ...++|+.|+|..+...
T Consensus 55 ~~~a~~A~~~l~--g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 55 RDGAVKAMEEMN--GKDLEGENIEIVFAKPP 83 (103)
T ss_dssp HHHHHHHHHHHT--TEEETTEEEEEEECCCC
T ss_pred HHHHHHHHHHHC--CCccCCCEEEEEEcCCC
Confidence 999999999653 34789999999965433
No 134
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.27 E-value=1.1e-06 Score=88.28 Aligned_cols=77 Identities=16% Similarity=0.314 Sum_probs=67.7
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|+++|+. .|.|..|++..+ +.+++++++|||+|.+.++|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~---------------------~~~g~~~g~afV~f~~~~~a~ 143 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQ-WGTIIDAQLMLD---------------------KDTGQSRGFGFVTYDSADAVD 143 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHT-TSCCSEEECCCS---------------------SSSSTTSEEEEEEESSHHHHH
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHh-CccEEEEEEEEc---------------------CCCCccceEEEEEECCHHHHH
Confidence 3568999999999999999999997 799999988775 335789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeec
Q 041430 91 RAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
.|+.+ +...++|+.|+|..
T Consensus 144 ~A~~~---~~~~~~g~~i~V~~ 162 (167)
T 2cjk_A 144 RVCQN---KFIDFKDRKIEIKR 162 (167)
T ss_dssp HHHHC---SEECSSSSCEEEEE
T ss_pred HHHhC---CCEEeCCeEEEEee
Confidence 99984 35789999999984
No 135
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.26 E-value=1.8e-06 Score=82.47 Aligned_cols=78 Identities=17% Similarity=0.278 Sum_probs=64.1
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccE----EEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecCh
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGV----WRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMP 86 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~ 86 (1197)
-.++|+|+|+|..++.++|.++|+. .|.| ..+++.+ +++++||||+|.+.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~~-------------------------g~~~g~afV~f~~~ 77 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFAR-FQEKKGPPIQFRMMT-------------------------GRMRGQAFITFPNK 77 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHH-HHHSSSSCCEEEEEC-------------------------SSSCSEEEEECSSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCccceEEEEEcCC-------------------------CccceEEEEEECCH
Confidence 4589999999999999999999998 6876 4555543 57899999999999
Q ss_pred HHHHHHHHhccCCceeecCeeeeeecCCCC
Q 041430 87 TYVTRAVDAAGRTELFLNGRALKVSLGPEN 116 (1197)
Q Consensus 87 ~~a~~a~~~a~~~~l~~~~~~lkv~~~~~~ 116 (1197)
++|..|+..... ..++|+.|+|..+...
T Consensus 78 ~~a~~Ai~~l~g--~~~~g~~l~v~~a~~~ 105 (115)
T 2cpx_A 78 EIAWQALHLVNG--YKLYGKILVIEFGKNK 105 (115)
T ss_dssp HHHHHHHHHSTT--CBCSSCBCEEEECCCC
T ss_pred HHHHHHHHHhCC--CEeCCcEEEEEEccCC
Confidence 999999986543 3579999999964433
No 136
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.26 E-value=1.1e-06 Score=80.46 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=64.5
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|+++|+.. .|..|++. +++++|||+|.++++|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~--~v~~~~i~---------------------------~~~g~afV~f~~~~~a~ 54 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY--DLKYCYVD---------------------------RNKRTAFVTLLNGEQAQ 54 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS--CCCCEEEE---------------------------GGGTEEEECCSCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC--CeEEEEEe---------------------------CCCcEEEEEECCHHHHH
Confidence 35789999999999999999999997 56666662 36789999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCCCCCc
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGPENPF 118 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~~~~~ 118 (1197)
.|+.... ...++|+.|+|..++.+.+
T Consensus 55 ~Ai~~l~--g~~~~g~~l~V~~a~~~~~ 80 (88)
T 1wg1_A 55 NAIQMFH--QYSFRGKDLIVQLQPTDAL 80 (88)
T ss_dssp HHHHHHT--TEEETTEEEEEEECCCCCC
T ss_pred HHHHHhC--CCeECCcEEEEEEcCCCce
Confidence 9999654 3578999999997766653
No 137
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.26 E-value=6.8e-07 Score=88.05 Aligned_cols=83 Identities=8% Similarity=0.150 Sum_probs=69.4
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhccccEEE--EEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecC
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWR--CRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAM 85 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~ 85 (1197)
.+...++|+|+|+|..++.++|+++|+. .|.|.. |+|..+ ..++++++||||+|.+
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~v~~~~v~i~~d---------------------~~tg~~rG~aFV~f~~ 76 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAP-YAVLSSSNVRVIKD---------------------KQTQLNRGFAFIQLST 76 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGG-GCCCCTTTEECCBC---------------------SSSSSBCSCEEEECCH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcceeeEEEEEc---------------------CCCCCcceEEEEEECC
Confidence 3456789999999999999999999986 898876 888876 4468899999999999
Q ss_pred hHHHHHHHHhccCC--ceeecCeeeeeecC
Q 041430 86 PTYVTRAVDAAGRT--ELFLNGRALKVSLG 113 (1197)
Q Consensus 86 ~~~a~~a~~~a~~~--~l~~~~~~lkv~~~ 113 (1197)
. .|..|+...... .+.++|+.|+|..+
T Consensus 77 ~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a 105 (131)
T 2m2b_A 77 I-EAAQLLQILQALHPPLTIDGKTINVEFA 105 (131)
T ss_dssp H-HHHHHHHHHTTCCCSCCGGGCCCCCEEC
T ss_pred H-HHHHHHHHhcCCCCCccCCCEEEEEEEC
Confidence 9 999998876532 23789999999854
No 138
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=1.1e-06 Score=84.57 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=61.5
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
...++|+|+|+|..++.++|+++|+. .|.|. +++... ...+..+++++||||+|.++++|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~-~~~~~~------------------~~~~~~g~~~G~aFV~f~~~~~a 65 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRR-FGPLV-VDWPHK------------------AESKSYFPPKGYAFLLFQEESSV 65 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTT-TCCCC-EECTTS------------------SSSCCCSCTTSEEEECCSSHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHh-cCCEE-EEEeec------------------CCCCCCCCcccEEEEEECCHHHH
Confidence 35689999999999999999999997 79877 655543 00011268999999999999999
Q ss_pred HHHHHhccCCceeecCeeeeee
Q 041430 90 TRAVDAAGRTELFLNGRALKVS 111 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~ 111 (1197)
..|+.... -++|+.|.+.
T Consensus 66 ~~Ai~~~~----~~~G~~~~~~ 83 (114)
T 2dnl_A 66 QALIDACL----EEDGKLYLCV 83 (114)
T ss_dssp HHHHHHSE----EETTEEEEEE
T ss_pred HHHHHhhh----hcCCcEEEec
Confidence 99998762 3677777766
No 139
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.24 E-value=1.8e-06 Score=93.50 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=68.0
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccc--cEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVG--GVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G--~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..++|+|+|++..++.++|+++|+. +| .|..|+|..+ ..++++++||||+|.+.++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~d---------------------~~tg~skGfaFV~f~~~~~ 124 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFEN---------------------RANGQSKGFALVGVGSEAS 124 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEEC---------------------TTTCCEEEEEEEEESCTTH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH-HCCcceEEEEEEec---------------------CCCCccceEEEEEECCHHH
Confidence 4568999999999999999999976 89 8999999986 4468899999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|..|+..... ..|+|+.|+|..+
T Consensus 125 a~~Ai~~lng--~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 125 SKKLMDLLPK--RELHGQNPVVTPV 147 (229)
T ss_dssp HHHHHTTSTT--SCBTTBCCEEEEC
T ss_pred HHHHHHHcCC--CeECCEEeEEEEC
Confidence 9999996542 3689999999953
No 140
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.24 E-value=3.5e-06 Score=79.96 Aligned_cols=78 Identities=18% Similarity=0.305 Sum_probs=66.2
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +++|||+|.+.++|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------------~g~afV~f~~~~~a 74 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSP-FGQIMEIRVFPE---------------------------KGYSFVRFSTHESA 74 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHH-HSCEEEEEEETT---------------------------TTEEEEEESSHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeCC---------------------------CCEEEEEECCHHHH
Confidence 35689999999999999999999997 899999988751 68999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecCCCCC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
..|+.... ...++|+.|+|..+...+
T Consensus 75 ~~A~~~l~--g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 75 AHAIVSVN--GTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp HHHHHHHT--TCEETTEECEEECCCCCC
T ss_pred HHHHHHcC--CCEECCcEEEEEecCCCC
Confidence 99997653 347899999999654443
No 141
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.24 E-value=2.6e-06 Score=84.20 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=64.7
Q ss_pred cccEEEEeCCCccccHHHHHH----HHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecCh
Q 041430 11 VDAQVSFGGFDRNVKAAELVK----YLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMP 86 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~----~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~ 86 (1197)
-.++|+|+|+|..++.++|++ +|+. .|.|..|.+..+ ++++++|||+|.+.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~-~G~I~~v~i~~~------------------------~~~rG~aFV~F~~~ 82 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASS-QGDILDIVVDLS------------------------DDNSGKAYIVFATQ 82 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECCC------------------------CSSCCCEEEEESSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhcc-CCCeEEEEeccC------------------------CCcCCEEEEEECCH
Confidence 467999999999999999875 5555 688988877543 57899999999999
Q ss_pred HHHHHHHHhccCCceeecCeeeeeecCCCCC
Q 041430 87 TYVTRAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 87 ~~a~~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
++|..|+..... ..+.|++|+|..+....
T Consensus 83 ~~A~~Ai~~lng--~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 83 ESAQAFVEAFQG--YPFQGNPLVITFSETPQ 111 (127)
T ss_dssp HHHHHHHHHSTT--CCCTTSCCEEEECCCCC
T ss_pred HHHHHHHHHHCC--CEeCCCEEEEEEccCcc
Confidence 999999987643 46789999998654443
No 142
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.24 E-value=3.2e-06 Score=78.51 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=64.0
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
+....++|+|+|+|..++.++|.++|+. .|.|..|++.+. +++|||+|.+.+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~~~~~---------------------------~g~afV~f~~~~ 64 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDR-FGSIRTIDHVKG---------------------------DSFAYIQYESLD 64 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHT-TSCEEEEEECSS---------------------------SCCEEEEESSHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEeCC---------------------------CCEEEEEECCHH
Confidence 3446789999999999999999999987 899999888641 579999999999
Q ss_pred HHHHHHHhccCCceeec--CeeeeeecC
Q 041430 88 YVTRAVDAAGRTELFLN--GRALKVSLG 113 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~--~~~lkv~~~ 113 (1197)
+|..|+..... ..++ |+.|+|..+
T Consensus 65 ~A~~A~~~l~g--~~~~~~g~~l~V~~a 90 (97)
T 1why_A 65 AAQAACAKMRG--FPLGGPDRRLRVDFA 90 (97)
T ss_dssp HHHHHHHHHTT--CBCSSSSCBCEEEEC
T ss_pred HHHHHHHHHCC--CEeCCCCcEEEEEEC
Confidence 99999996543 2556 999999953
No 143
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.24 E-value=4.2e-07 Score=91.30 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=65.7
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
...++|+|+|+|..++.+||++||+. +| +..|+|..+ + .++++++|||+|++.+.|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~-~G-i~~v~i~~d---------------------~-~g~srGfaFV~F~~~e~A 99 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSP-LN-PVRVHIEIG---------------------P-DGRVTGEADVEFATHEEA 99 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCS-CC-CSEEECCCS---------------------S-SSCSSCCCEEECSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEC---------------------C-CCCCceEEEEEeCCHHHH
Confidence 45679999999999999999999998 77 447777664 2 378999999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecCCCC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLGPEN 116 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~~~~ 116 (1197)
..|+.+ +...+++++|+|..+...
T Consensus 100 ~~Al~~---~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 100 VAAMSK---DRANMQHRYIELFLNSTT 123 (139)
T ss_dssp HHHTTC---CSCSSSSCCCCCEECCCS
T ss_pred HHHHhh---CCCEECCEEEEEEECCCC
Confidence 999944 346899999999854433
No 144
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=1.9e-06 Score=79.22 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=63.3
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhcccc-EEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGG-VWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~-v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
..-.++|+|+|+|..++.++|+++|+. .|. |..|.++ ++++|||+|.+.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~vv~~~~~~----------------------------~~g~afV~f~~~~ 55 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGD-RKLPLAGQVLL----------------------------KSGYAFVDYPDQN 55 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHH-TTCCCSSCEEE----------------------------ETTEEEECCSCHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHH-cCCceEEEEEc----------------------------CCCEEEEEECCHH
Confidence 345689999999999999999999988 676 5555442 4679999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeecCCCCC
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
+|..|+..... ...++|+.|+|..+...+
T Consensus 56 ~A~~A~~~l~g-~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 56 WAIRAIETLSG-KVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp HHHHHHHHHTT-TCEETTEECEEEECCCCC
T ss_pred HHHHHHHHccC-CeeECCEEEEEEEccCcc
Confidence 99999986542 257899999999654433
No 145
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.22 E-value=7e-07 Score=86.55 Aligned_cols=76 Identities=18% Similarity=0.316 Sum_probs=65.4
Q ss_pred ccccEEEEeCCCcc-ccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 10 LVDAQVSFGGFDRN-VKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~-~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
.-.++|+|+|+|.. ++.+||.++|+. .|.|..|+|.. ++++|||+|++.++
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~-fG~V~~v~i~~---------------------------~kg~aFVef~~~~~ 74 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEP-YGKIKNYILMR---------------------------MKSQAFIEMETRED 74 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTT-TSCCSEEEEET---------------------------TTTEEEEECSSHHH
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHh-cCCEEEEEEec---------------------------CCCEEEEEECCHHH
Confidence 35789999999998 999999999987 79999998852 46899999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|..|+.......+.++|+.|+|..+
T Consensus 75 A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 75 AMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp HHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred HHHHHHHhccCCceECCEEEEEEEC
Confidence 9999986543456789999999853
No 146
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.22 E-value=9.6e-06 Score=76.99 Aligned_cols=78 Identities=14% Similarity=0.154 Sum_probs=65.3
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
......+|+|+|+|..++.++|+++|+. +|.|..|+|.. . ++|||+|++.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~i~~-------------------------~---g~afV~f~~~~ 61 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYR-------------------------D---GTGVVEFVRKE 61 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEET-------------------------T---TEEEEEESSHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEec-------------------------C---CEEEEEECCHH
Confidence 3446789999999999999999999987 89999998875 1 89999999999
Q ss_pred HHHHHHHhccCCceeecC-----eeeeeecCCCC
Q 041430 88 YVTRAVDAAGRTELFLNG-----RALKVSLGPEN 116 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~-----~~lkv~~~~~~ 116 (1197)
+|..|+.... ...++| +.|+|..+...
T Consensus 62 ~a~~Ai~~l~--g~~~~g~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 62 DMTYAVRKLD--NTKFRSHEGETAYIRVKVDGPR 93 (108)
T ss_dssp HHHHHHHHSS--SEEEECTTSCEEEEEEEESSCC
T ss_pred HHHHHHHHHC--cCCccCCcCcceEEEEEeCCCC
Confidence 9999999654 346777 99999954443
No 147
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.22 E-value=3.1e-06 Score=79.04 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=62.3
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
..++|+|+|+|..++.++|+++|+. .|.|..|++. ++++||||+|.+.++|.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~~~---------------------------~~~g~afV~f~~~~~A~ 77 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQN-FGFILDFKHY---------------------------PEKGCCFIKYDTHEQAA 77 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHT-TSCCSEEEEE---------------------------TTTTEEEEECSSHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHh-CCCEEEEEEe---------------------------cCCCEEEEEECCHHHHH
Confidence 4689999999999999999999988 7988887775 25689999999999999
Q ss_pred HHHHhccCCceeecCeeeeeec
Q 041430 91 RAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
.|+.... ...++|+.|+|..
T Consensus 78 ~Ai~~l~--g~~~~g~~l~V~~ 97 (101)
T 2la4_A 78 VCIVALA--NFPFQGRNLRTGW 97 (101)
T ss_dssp HHHHHHT--TCEETTEECCCCB
T ss_pred HHHHHhC--CCeECCeEEEEEe
Confidence 9998654 3578999999984
No 148
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.21 E-value=3e-06 Score=80.96 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=63.4
Q ss_pred cccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecCh
Q 041430 7 EKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMP 86 (1197)
Q Consensus 7 ~~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~ 86 (1197)
..+.-.++|+|+|+|..++.++|.++|+. .|.|..|++. +++|||+|.+.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~-----------------------------kg~afV~f~~~ 75 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGP-FGPMKEVKIL-----------------------------NGFAFVEFEEA 75 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTT-TSCCCEEEEE-----------------------------TTEEEEECSSH
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEE-----------------------------CCEEEEEECCH
Confidence 34556789999999999999999999987 8988777765 57999999999
Q ss_pred HHHHHHHHhccCCceeecCeeeeeecCC
Q 041430 87 TYVTRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 87 ~~a~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
++|..|+..... ..++|+.|+|..+.
T Consensus 76 ~~A~~Ai~~l~g--~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 76 ESAAKAIEEVHG--KSFANQPLEVVYSK 101 (108)
T ss_dssp HHHHHHHHHHTT--CEETTEECEEESCS
T ss_pred HHHHHHHHHcCC--CEECCeEEEEEEec
Confidence 999999986543 36799999999543
No 149
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.21 E-value=2.8e-06 Score=81.41 Aligned_cols=82 Identities=17% Similarity=0.117 Sum_probs=67.9
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
++.-.++|+|+|+|..++.++|+++|+. .|.|..|+|.. ++++|||+|.+.+
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~---------------------------~~g~afV~f~~~~ 57 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSR-FGSLGRVLLPE---------------------------GGITAIVEFLEPL 57 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCS---------------------------SSSCEEEEESCHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeC---------------------------CCCEEEEEeCCHH
Confidence 3445789999999999999999999997 89998887652 4578999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeecCCCCCcc
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSLGPENPFR 119 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~~~~~~~~ 119 (1197)
+|..|+..... ..++|+.|+|..+..+.+.
T Consensus 58 ~A~~Ai~~l~g--~~~~g~~l~V~~a~~~~~~ 87 (111)
T 1whx_A 58 EARKAFRHLAY--SKFHHVPLYLEWAPIGVFG 87 (111)
T ss_dssp HHHHHHHHHTT--CBSSSSBCEEEEEETTTTC
T ss_pred HHHHHHHHhCC--CEECCeEEEEEECCCCccC
Confidence 99999986542 3688999999876666543
No 150
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.21 E-value=3.1e-06 Score=85.40 Aligned_cols=78 Identities=14% Similarity=0.225 Sum_probs=63.1
Q ss_pred ccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCC--CccceEEEEecChHHH
Q 041430 12 DAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYE--KVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 12 ~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~V~F~~~~~a 89 (1197)
.++|+|+|+|.+++.++|.++|+. .|.|..|+|..+ +..+ +++++|||+|.++++|
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~---------------------~~~~~~~~~g~afV~f~~~~~A 60 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQ-YGAVYEINVLRD---------------------RSQNPPQSKGCCFVTFYTRKAA 60 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEE---------------------CSSSSCEEEEEEEEEESSHHHH
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEec---------------------CCCCCCCcceEEEEEECCHHHH
Confidence 579999999999999999999987 799999999886 2233 7899999999999999
Q ss_pred HHHHHhccCCceeec-Ceeeeee
Q 041430 90 TRAVDAAGRTELFLN-GRALKVS 111 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~-~~~lkv~ 111 (1197)
..|+.......+.-+ +.++++.
T Consensus 61 ~~A~~~l~~~~~~~~~~~~~~~~ 83 (175)
T 3nmr_A 61 LEAQNALHNMKVLPGMHHPIQMK 83 (175)
T ss_dssp HHHHHHHTTTCCCTTCSSCCEEE
T ss_pred HHHHHHhcCcEEccCCccceEEc
Confidence 999986543233222 5666666
No 151
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.20 E-value=1.9e-06 Score=89.77 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=69.7
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|+++|+. +|.|..|+|..+ . .++++++|||+|.+.++|.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d---------------------~-~g~~kG~afV~F~~~~~A~ 143 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYD---------------------R-SGRSLGTADVHFERRADAL 143 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHH-TSCCSEEEECCC---------------------T-TSSCSCCEEEEESCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC---------------------C-CCCEeeEEEEEeCCHHHHH
Confidence 4579999999999999999999998 899999999875 2 5789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCCCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGPEN 116 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~~~ 116 (1197)
.|+.... ...++|+.|+|..+...
T Consensus 144 ~Ai~~ln--g~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 144 KAMKQYK--GVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp HHHHHST--TCBCSSSBCEEEEESSG
T ss_pred HHHHHhC--CCEECCEEEEEEEecCC
Confidence 9999654 34789999999864443
No 152
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.18 E-value=3.2e-06 Score=78.77 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=63.2
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|+++|+. .|.|..|++.. ++++|||+|.+.++|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~~---------------------------~kg~afV~f~~~~~a~ 65 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEK-YGKAGEVFIHK---------------------------DKGFGFIRLETRTLAE 65 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTST-TCCCSEEEEET---------------------------TTTEEEEECSSSHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhh-cCCeEEEEEec---------------------------CCCEEEEEECCHHHHH
Confidence 5679999999999999999999988 79888888763 2689999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
.|+..... ..++|+.|+|..+.
T Consensus 66 ~a~~~l~g--~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 66 IAKVELDN--MPLRGKQLRVRFAC 87 (99)
T ss_dssp HHHHHHTT--CCBTTBCCEEEESS
T ss_pred HHHHHhCC--CEeCCceEEEEEcC
Confidence 99976543 35889999999543
No 153
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.17 E-value=7.4e-06 Score=76.54 Aligned_cols=73 Identities=18% Similarity=0.367 Sum_probs=62.6
Q ss_pred cccccEEEEeCCCc-cccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 9 LLVDAQVSFGGFDR-NVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~-~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
....++|+|+|+|. .++.++|.++|+. .|.|..|++. +++|||+|.+.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~-~G~v~~v~i~-----------------------------~g~afV~f~~~~ 68 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINIK-----------------------------NAFGFIQFDNPQ 68 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGG-GSCEEEEEEC-----------------------------SSEEEEEESSHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEe-----------------------------CCEEEEEECCHH
Confidence 34678999999997 9999999999988 7999988872 479999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeecC
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
+|..|+.... ...++|+.|+|..+
T Consensus 69 ~A~~Ai~~l~--g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 69 SVRDAIEXES--QEMNFGKKLILEVS 92 (97)
T ss_dssp HHHHHHHHHT--TSEETTEECEEEEC
T ss_pred HHHHHHHHcC--CCEECCEEEEEEec
Confidence 9999999653 34788999999853
No 154
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.17 E-value=4.6e-06 Score=84.14 Aligned_cols=79 Identities=15% Similarity=0.288 Sum_probs=66.7
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
...++|+|+|+|..++.++|+++|+. .|.|..|++..+ + .++++++|||+|.+.++|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~~~~~---------------------~-~g~~~g~afV~f~~~~~A 149 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSS-FGQIEECRILRG---------------------P-DGLSRGCAFVTFTTRAMA 149 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------T-TSCEEEEEEEEESSHHHH
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHh-CCCEEEEEEEEC---------------------C-CCCEEEEEEEEECCHHHH
Confidence 36789999999999999999999987 899999999875 2 367899999999999999
Q ss_pred HHHHHhccCCceeec--Ceeeeeec
Q 041430 90 TRAVDAAGRTELFLN--GRALKVSL 112 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~--~~~lkv~~ 112 (1197)
..|+....... +++ +++|+|+.
T Consensus 150 ~~A~~~l~g~~-~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 150 QTAIKAMHQAQ-TMEGCSSPMVVKF 173 (175)
T ss_dssp HHHHHHHTTSC-CCTTCSSCCEEEE
T ss_pred HHHHHHhcCCc-ccCCCCCCeEEEe
Confidence 99998765433 444 58999874
No 155
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.17 E-value=1.1e-05 Score=75.17 Aligned_cols=72 Identities=22% Similarity=0.236 Sum_probs=60.5
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhcc-ccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEV-GGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~-G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
-.++|+|+|+|..++.++|+++|+..- |.|..|++. +++|||+|.+.++|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----------------------------~g~afV~f~~~~~A 64 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----------------------------RDYAFVHFSNREDA 64 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----------------------------SSEEEEEESSHHHH
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----------------------------CCeEEEEeCCHHHH
Confidence 568999999999999999999999842 778776532 45999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
..|+.... ...++|+.|+|..+
T Consensus 65 ~~A~~~l~--g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 65 VEAMKALN--GKVLDGSPIEVTLA 86 (99)
T ss_dssp HHHHHHHS--SEEETTEEEEEECC
T ss_pred HHHHHHhC--CCEeCCcEEEEEEC
Confidence 99999654 34789999999954
No 156
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.17 E-value=6.3e-06 Score=75.72 Aligned_cols=75 Identities=20% Similarity=0.315 Sum_probs=63.9
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
.....++|+|+|+|..++.++|+++|+. .|.|..|++.. .+|||+|.+.+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~v~~~~-----------------------------~~afV~f~~~~ 55 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEE-YGPVIECDIVK-----------------------------DYAFVHMERAE 55 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHT-TSCCCEEEECS-----------------------------SEEEEEESCHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEC-----------------------------CEEEEEECCHH
Confidence 4456789999999999999999999998 89888887752 19999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeecCC
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
+|..|+.... ...++|+.|+|..+.
T Consensus 56 ~a~~A~~~l~--g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 56 DAVEAIRGLD--NTEFQGKRMHVQLST 80 (92)
T ss_dssp HHHHHHHHHT--TEEETTEEEEEEESS
T ss_pred HHHHHHHHhC--CCeeCCcEEEEEEcc
Confidence 9999998654 347899999999643
No 157
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.16 E-value=5.1e-06 Score=83.38 Aligned_cols=75 Identities=24% Similarity=0.281 Sum_probs=65.1
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
....++|+|+|+|..++.++|.++|+. .|.|..|+|..+ +++||||+|.+.++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~--------------------------~~g~afV~f~~~~~ 122 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGY-YGPLRSVWVARN--------------------------PPGFAFVEFEDPRD 122 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHH-HSCEEEEEECSS--------------------------SCSEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-hCCEEEEEEeeC--------------------------CCcEEEEEECCHHH
Confidence 346789999999999999999999998 799999998752 68899999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeec
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
|..|+..... ..++|++|+|..
T Consensus 123 a~~A~~~l~g--~~~~g~~l~v~~ 144 (150)
T 2i2y_A 123 AADAVRELDG--RTLCGCRVRVEL 144 (150)
T ss_dssp HHHHHHHHSS--SCSSSSCCEEEE
T ss_pred HHHHHHHcCC--CEECCeEEEEEE
Confidence 9999986543 357999999984
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.15 E-value=7.2e-06 Score=84.72 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=69.2
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-.++|.|+|+|..++.++|+++|+. .|.|..|++..+ +..++++++|||+|.+.++|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~~---------------------~~~~~~~g~afV~f~~~~~a 169 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKD---------------------SATGLSKGYAFCEYVDINVT 169 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHT-BSCEEEEEEEEC---------------------TTTCSEEEEEEEEESSSSHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccEEEEeec---------------------CCCCCcceEEEEEECCHHHH
Confidence 35689999999999999999999998 899999999876 33578999999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeec
Q 041430 90 TRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
..|+.... ...++|+.|+|+.
T Consensus 170 ~~A~~~l~--g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 170 DQAIAGLN--GMQLGDKKLLVQR 190 (198)
T ss_dssp HHHHHHHT--TCEETTEECEEEE
T ss_pred HHHHHHcC--CCEECCEEEEEEE
Confidence 99999653 3478999999995
No 159
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.14 E-value=3.4e-06 Score=76.86 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=60.5
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
..++|+|+|+|..++.++|+++|+. .|.|..|+|..+ +++||||+|.+.++|.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~--------------------------~~g~afV~f~~~~~a~ 56 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQ-YGDVMDVFIPKP--------------------------FRAFAFVTFADDQIAQ 56 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTT-TSCCCEEECCSS--------------------------CCSCCEEECSCHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEEecC--------------------------CCCEEEEEECCHHHHH
Confidence 4689999999999999999999987 799888887642 7899999999999997
Q ss_pred HHHHhccCCceeecCeeeeeecC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
.| - ...+.++++.|+|..+
T Consensus 57 ~~---~-~~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 57 SL---C-GEDLIIKGISVHISNA 75 (88)
T ss_dssp HT---T-TCEEEETTEEEEEECC
T ss_pred HH---h-cCCceeCCEEEEEEec
Confidence 43 2 2267889999999843
No 160
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=8.4e-06 Score=74.56 Aligned_cols=74 Identities=20% Similarity=0.269 Sum_probs=63.5
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..-.++|+|+|+|..++.++|+++|+. .|.|..|++.. ++|||+|.+.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~~~-----------------------------~~afV~f~~~~~ 55 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFER-RGRVIECDVVK-----------------------------DYAFVHMEKEAD 55 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHH-HSCEEEEEECS-----------------------------SCEEEEESCHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHc-CCCEEEEEEEC-----------------------------CEEEEEECCHHH
Confidence 446789999999999999999999998 89999888762 199999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecCC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
|..|+.... ...++|+.|+|..+.
T Consensus 56 a~~A~~~l~--g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 56 AKAAIAQLN--GKEVKGKRINVELST 79 (90)
T ss_dssp HHHHHHHHT--TCEETTEECEEEESC
T ss_pred HHHHHHHhC--CCEECCcEEEEEECC
Confidence 999998654 347899999999543
No 161
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.41 E-value=3.2e-07 Score=88.16 Aligned_cols=79 Identities=23% Similarity=0.322 Sum_probs=66.4
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEE--------EEEeecCCCCCCCCCccccccccccccCCCCCccceEEEE
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWR--------CRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVH 82 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~ 82 (1197)
-.++|+|+|+|..++.++|+++|+. .|.|.. |+|..+ +.++++++||||+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~---------------------~~~g~~~g~afV~ 63 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTD---------------------RETGKLKGEATVS 63 (116)
Confidence 5689999999999999999999998 788877 666654 3457899999999
Q ss_pred ecChHHHHHHHHhccCCceeecCeeeeeecC
Q 041430 83 FAMPTYVTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 83 F~~~~~a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|.+.++|..|+.... ...++|+.|+|..+
T Consensus 64 f~~~~~A~~Ai~~l~--g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 64 FDDPPSAKAAIDWFD--GKEFSGNPIKVSFA 92 (116)
Confidence 999999999998543 24688999999854
No 162
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.12 E-value=7.2e-06 Score=77.95 Aligned_cols=72 Identities=21% Similarity=0.374 Sum_probs=62.0
Q ss_pred ccccEEEEeCCCcc-ccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 10 LVDAQVSFGGFDRN-VKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~-~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
...++|+|+|+|.. ++.++|.++|+. .|.|..|+| +++||||+|.+.++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~-~G~v~~v~i-----------------------------~~g~afV~f~~~~~ 74 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSK-YGRVAGCSV-----------------------------HKGYAFVQYSNERH 74 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGG-GSCCSEEEE-----------------------------ETTEEEEECSSSHH
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEE-----------------------------eCCEEEEEECCHHH
Confidence 35689999999999 999999999987 898888877 24799999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|..|+.... ...++|+.|+|..+
T Consensus 75 A~~A~~~l~--g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 75 ARAAVLGEN--GRVLAGQTLDINMA 97 (110)
T ss_dssp HHHHHHHHT--TCEETTEECCEEES
T ss_pred HHHHHHHcC--CCEECCeEEEEEEC
Confidence 999997654 24789999999964
No 163
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.10 E-value=7.2e-06 Score=82.30 Aligned_cols=79 Identities=16% Similarity=0.248 Sum_probs=66.4
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
...++|.|+|+|..++.++|.++|+. .|.|..+++..+ +.+++++++|||+|.+.++|
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~---------------------~~~~~~~g~afV~f~~~~~A 144 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGK-YGSIVQKNILRD---------------------KLTGRPRGVAFVRYNKREEA 144 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTS-SSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHH
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhc-CCcEEEEEEEEc---------------------CCCCCcceEEEEEECCHHHH
Confidence 35689999999999999999999987 899999999875 33577899999999999999
Q ss_pred HHHHHhccCCceeecC--eeeeeec
Q 041430 90 TRAVDAAGRTELFLNG--RALKVSL 112 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~--~~lkv~~ 112 (1197)
..|+...... .++| ++|+|+.
T Consensus 145 ~~A~~~l~g~--~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 145 QEAISALNNV--IPEGGSQPLSVRL 167 (168)
T ss_dssp HHHHHHHTTC--CCTTCSSCCEEEE
T ss_pred HHHHHHhcCC--EecCCCeEEEEEe
Confidence 9999965432 5555 8888873
No 164
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.09 E-value=3.2e-06 Score=84.21 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=63.0
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEE--------EEEeecCCCCCCCCCccccccccccccCCCCCccceEEEE
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWR--------CRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVH 82 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~ 82 (1197)
..++|+|+|+|..++.++|.++|+. .|.|.. +++.. ++++++||||+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~di~~~~------------------------~g~~~g~afV~ 98 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGR-YVDFSSETQRIMFDIRLMK------------------------EGRMKGQAFIG 98 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGG-GCCTTCHHHHHHCEEEEEE------------------------ETTTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCcccccccceeeEEecc------------------------CCCcccEEEEE
Confidence 4679999999999999999999987 786554 33333 36899999999
Q ss_pred ecChHHHHHHHHhccCCceeecCeeeeeecC
Q 041430 83 FAMPTYVTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 83 F~~~~~a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|.+.++|..|+.... ...++|+.|+|..+
T Consensus 99 f~~~~~A~~Ai~~ln--g~~~~g~~l~V~~a 127 (143)
T 3egn_A 99 LPNEKAAAKALKEAN--GYVLFGKPMVVQFA 127 (143)
T ss_dssp CSSHHHHHHHHHHHT--TBEETTEECEEEEC
T ss_pred eCCHHHHHHHHHHhC--CCEeCCcEEEEEEC
Confidence 999999999999654 34679999999954
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.09 E-value=6.7e-06 Score=87.24 Aligned_cols=77 Identities=18% Similarity=0.319 Sum_probs=66.8
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|.|+|+|..++.++|+++|+. .|.|..|+|..+ ..+++++|||+|.+.++|.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~d-----------------------~~~~~g~~fV~f~~~~~a~ 157 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCD-----------------------ENGSKGYGFVHFETQEAAE 157 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEE-----------------------TTEEEEEEEEEESSHHHHH
T ss_pred ccccceECCcccccHHHHHHHHHhh-cCCeEEEEeecc-----------------------CCCCceEEEEEeCCHHHHH
Confidence 3568999999999999999999987 899999999876 2457999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
.|+.... ...++|+.|+|..+
T Consensus 158 ~Ai~~ln--g~~~~g~~i~V~~a 178 (213)
T 4f02_A 158 RAIEKMN--GMLLNDRKVFVGRF 178 (213)
T ss_dssp HHHHHHT--TCEETTEECEEEEC
T ss_pred HHHHHhC--CCEECCEEEEEEEc
Confidence 9998653 34789999999854
No 166
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.07 E-value=7e-06 Score=90.65 Aligned_cols=78 Identities=17% Similarity=0.105 Sum_probs=65.6
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
+.-.++|+|+|+|.+++.++|.++|+. +|.|..|+|..+ + .+++++|||+|.++++
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---------------------~--~~~~g~afV~f~~~~~ 93 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKH-CGPIIHVDVADS---------------------L--KKNFRFARIEFARYDG 93 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------T--TSSSEEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC---------------------C--CCCcEEEEEEECCHHH
Confidence 346789999999999999999999998 899999999886 1 3368999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|..|+.+ +...++|+.|+|...
T Consensus 94 A~~A~~~---~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 94 ALAAITK---THKVVGQNEIIVSHL 115 (292)
T ss_dssp HHHHHTT---TTCEETTEECEEEEC
T ss_pred HHHHHHh---CCcEeCCcEEEEEEC
Confidence 9999965 346899999999853
No 167
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.05 E-value=2.3e-05 Score=72.68 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=62.3
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
...++|+|+|+ .++.++|.++|+. .|.|..|+|. +++++|||+|.+.++|
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~-~G~i~~v~i~---------------------------~~~g~afV~f~~~~~a 62 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD---------------------------PPRNCAFVTYEKMESA 62 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTT-TSCEEEEEEE---------------------------TTTTEEEEEESSHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhh-CCCEEEEEec---------------------------CCCCEEEEEECCHHHH
Confidence 36689999996 8999999999987 8999998883 3568999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecCCC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLGPE 115 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~~~ 115 (1197)
..|+.... ...++|+.|+|..+..
T Consensus 63 ~~Ai~~l~--g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 63 DQAVAELN--GTQVESVQLKVNIARK 86 (97)
T ss_dssp HHHHHHTT--TEEETTEEEEEECCSS
T ss_pred HHHHHHhC--CCeECCeEEEEEECCC
Confidence 99997754 3467999999995433
No 168
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.04 E-value=1.4e-05 Score=81.11 Aligned_cols=76 Identities=12% Similarity=0.163 Sum_probs=64.6
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..-.++|+|+|+|..++.++|+++|+. +|.|..+ .. .++++++|||+|.+.++
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~-~g~v~~~--~~------------------------~~~~~g~afV~f~~~~~ 148 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV--SQ------------------------DGKSKGIAYIEFKSEAD 148 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTT-CSEEEEE--CS------------------------SSSCCSEEEEECSSHHH
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHh-cCeEEEe--cC------------------------CCCCceEEEEEECCHHH
Confidence 346789999999999999999999998 7888766 22 36789999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|..|+.... ...++|+.|+|+.+
T Consensus 149 A~~A~~~l~--g~~~~g~~i~v~~a 171 (175)
T 1fje_B 149 AEKNLEEKQ--GAEIDGRSVSLYYT 171 (175)
T ss_dssp HHHHHHHHT--EEEETTEEEEEEEC
T ss_pred HHHHHHHhC--CCEECCeEEEEEec
Confidence 999999653 35889999999854
No 169
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.03 E-value=8.5e-06 Score=96.34 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=69.5
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
..++|+|+|+|..++.++|.++|+. +|.|..|.|... ..++++.+||||+|.+.++|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~-~G~I~~v~i~~d---------------------~~tg~~kG~aFV~F~~~e~A~ 158 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYS---------------------KRSGKPRGYAFIEYEHERDMH 158 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEeecc---------------------CCCCCccceEEEeeccHHHHH
Confidence 3479999999999999999999998 899999999875 335789999999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
.|+.+.. ...|+|+.|+|..+.
T Consensus 159 ~Ai~~ln--g~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 159 SAYKHAD--GKKIDGRRVLVDVER 180 (437)
T ss_pred HHHHHcC--CCEECCEEEEEEEeC
Confidence 9998754 347899999999544
No 170
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.02 E-value=1.5e-05 Score=79.69 Aligned_cols=78 Identities=15% Similarity=0.243 Sum_probs=64.2
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
...++|.|+|+|..++.++|+++|+. .|.|..+++..+ +.+++++++|||+|.+.++|
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~---------------------~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQ-YGRIITSRILVD---------------------QVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHH
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHh-cCCEeEEEEEec---------------------CCCCCccceEEEEeCCHHHH
Confidence 35678999999999999999999997 799999999875 33577899999999999999
Q ss_pred HHHHHhccCCceeecCee--eeee
Q 041430 90 TRAVDAAGRTELFLNGRA--LKVS 111 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~--lkv~ 111 (1197)
..|+..... ..++|+. |+|+
T Consensus 144 ~~A~~~l~g--~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 144 EEAIKGLNG--QKPSGATEPITVK 165 (167)
T ss_dssp HHHHHHHTT--CCCTTCSSCCEEE
T ss_pred HHHHHHhcC--CccCCCccceEEE
Confidence 999995532 2566654 5554
No 171
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=1e-05 Score=74.61 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=63.1
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEE-EeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCR-LKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
.-.++|+|+|+|..++.++|+++|+. .|.|..|+ |... +..+.|||+|.+.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~i~~~-------------------------~~~~~afV~f~~~~~ 66 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQ-YGVVESCEQVNTD-------------------------SETAVVNVTYSSKDQ 66 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHH-HSCEEEEEEECCS-------------------------SSSEEEEEEESSHHH
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHh-cCCeEEEEEeecC-------------------------CCCCEEEEEECCHHH
Confidence 35689999999999999999999997 89999996 6553 112229999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecCCC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLGPE 115 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~~~ 115 (1197)
|..|+.... ...++|+.|+|..+..
T Consensus 67 a~~Ai~~l~--g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 67 ARQALDKLN--GFQLENFTLKVAYIPD 91 (96)
T ss_dssp HHHHHHHHT--TCBCSSCBCEEEECCC
T ss_pred HHHHHHHhC--CCEECCcEEEEEEcCc
Confidence 999998654 3477999999985433
No 172
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.00 E-value=6.2e-06 Score=76.56 Aligned_cols=73 Identities=18% Similarity=0.365 Sum_probs=61.5
Q ss_pred ccccEEEEeCCCc-cccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 10 LVDAQVSFGGFDR-NVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 10 ~~~~~i~v~gf~~-~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
.-.++|+|+|+|. .++.++|.++|+. .|.|..|+|. +++|||+|.+.++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~-----------------------------~g~afV~f~~~~~ 57 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINIK-----------------------------NAFGFIQFDNPQS 57 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTT-TCCCCEEEEE-----------------------------TTEEEEEESCHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEe-----------------------------CCEEEEEECCHHH
Confidence 3578999999997 9999999999998 7988888772 4699999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecCC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
|..|+..... ..++|+.|+|..+.
T Consensus 58 A~~A~~~l~g--~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 58 VRDAIECESQ--EMNFGKKLILEVSS 81 (96)
T ss_dssp HHHHHHHHTC--SSCBTTTBCEEEEE
T ss_pred HHHHHHHcCC--CeeCCcEEEEEEcC
Confidence 9999996532 36789999998643
No 173
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.98 E-value=2.2e-05 Score=79.19 Aligned_cols=71 Identities=15% Similarity=0.331 Sum_probs=58.8
Q ss_pred ccEEEEeCCCccccHHHHHHHHHhc---cc-------cEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEE
Q 041430 12 DAQVSFGGFDRNVKAAELVKYLENE---VG-------GVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFV 81 (1197)
Q Consensus 12 ~~~i~v~gf~~~~~a~~l~~~le~~---~G-------~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V 81 (1197)
.++|+|+|+|..++.++|.++|+.. .| .|..+++. +++++|||
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---------------------------~~~g~afV 56 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------------------------QDKNFAFL 56 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---------------------------TTTTEEEE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---------------------------CCCCEEEE
Confidence 5799999999999999999999995 25 55555443 35799999
Q ss_pred EecChHHHHHHHHhccCCceeecCeeeeeec
Q 041430 82 HFAMPTYVTRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 82 ~F~~~~~a~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
+|.++++|..|+.+- ...++|+.|+|..
T Consensus 57 ~f~~~~~A~~A~~~~---~~~~~g~~i~v~~ 84 (172)
T 2g4b_A 57 EFRSVDETTQAMAFD---GIIFQGQSLKIRR 84 (172)
T ss_dssp EESSHHHHHHHGGGT---TCEETTEECEEEC
T ss_pred EeCCHHHHHHHHHhC---CcEecCceeeecC
Confidence 999999999999433 3478999999995
No 174
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.96 E-value=4.5e-06 Score=84.77 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=62.2
Q ss_pred ccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
...-.++|+|+|+|..++.++|+++|+. .|.+..+.+.. ...++++++|||+|.+++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~g~~~~~~~~~----------------------~~~~~~~g~afV~f~~~~ 65 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISE-LFAKNDLAVVD----------------------VRTGTNRKFGYVDFESAE 65 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHH-HHHHHTCCCCE----------------------EEEETTTTEEEEEESSHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHH-hCCcceEEEEE----------------------CCCCccccEEEEEECCHH
Confidence 3446789999999999999999999998 44332211111 123678999999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeecCC
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
+|..|+.+- ...++|++|+|..+.
T Consensus 66 ~a~~A~~l~---g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 66 DLEKALELT---GLKVFGNEIKLEKPK 89 (175)
T ss_dssp HHHHHHHGG---GEEETTEEEEEECCC
T ss_pred HHHHHHhcC---CCEeCCeEEEEecCC
Confidence 999999644 458889999999543
No 175
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.96 E-value=1.6e-05 Score=86.74 Aligned_cols=82 Identities=22% Similarity=0.306 Sum_probs=66.6
Q ss_pred cccccEEEEeCCCccc---------cHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceE
Q 041430 9 LLVDAQVSFGGFDRNV---------KAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHA 79 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~---------~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 79 (1197)
+...+||+|||++..+ +.++|.++|+. .|.|..|+|.. ++++|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~-fG~I~~v~v~~---------------------------~kG~A 182 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSR-LGDIDRIRYVE---------------------------SKNCG 182 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHT-TSCEEEEEEEG---------------------------GGTEE
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHc-cCCEEEEEEEC---------------------------CCCEE
Confidence 3457899999999998 79999999998 79999998874 36899
Q ss_pred EEEecChHHHHHHHHhccCCceee----------cCeeeeeecCCCCCc
Q 041430 80 FVHFAMPTYVTRAVDAAGRTELFL----------NGRALKVSLGPENPF 118 (1197)
Q Consensus 80 ~V~F~~~~~a~~a~~~a~~~~l~~----------~~~~lkv~~~~~~~~ 118 (1197)
||+|.+.++|..|+.+.....|++ +|+.|+|.-+-++|.
T Consensus 183 FV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 183 FVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp EEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 999999999999998876544433 899999997776663
No 176
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.93 E-value=3.1e-05 Score=85.11 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=68.1
Q ss_pred ccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHHH
Q 041430 12 DAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTR 91 (1197)
Q Consensus 12 ~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~~ 91 (1197)
.++|+|+|+|..++.++|.++|+. .|.|..|++..+ +.+++++++|||+|.+.++|..
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~---------------------~~~g~~~g~afV~f~~~~~a~~ 152 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRP-FGSLERCFLVYS---------------------ERTGQSKGYGFAEYMKKDSAAR 152 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---------------------TTTCCEEEEEEEEESSHHHHHH
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHh-cCCeeEEEEEee---------------------CCCCccceEEEEEECCHHHHHH
Confidence 478999999999999999999988 899999999875 3357899999999999999999
Q ss_pred HHHhccCCceeecCeeeeeecCC
Q 041430 92 AVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 92 a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
|+..... ..++|+.|+|..+.
T Consensus 153 A~~~l~~--~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 153 AKSDLLG--KPLGPRTLYVHWTD 173 (284)
T ss_dssp HHHHHTT--CEETTEECEEEECC
T ss_pred HHHHhCC--CEeCCcEEEEEECC
Confidence 9965432 37899999998543
No 177
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.92 E-value=3.3e-05 Score=82.77 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=65.9
Q ss_pred ccccEEEEeCCCc-cccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 10 LVDAQVSFGGFDR-NVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 10 ~~~~~i~v~gf~~-~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
.-.++|+|+|+|. .++.++|.++|+. .|.|..|+|..+ .+++|||+|.+.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~-~G~i~~v~i~~~--------------------------~~g~afV~F~~~~~ 84 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFN--------------------------KKENALVQMADGNQ 84 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHH-HTCEEEEEECCT--------------------------TSCCEEEEESCHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEEEEC--------------------------CCCEEEEEECCHHH
Confidence 3568999999999 9999999999987 899999999875 17899999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecCCCC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLGPEN 116 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~~~~ 116 (1197)
|..|+.... ...++|+.|+|..+...
T Consensus 85 A~~Ai~~l~--g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 85 AQLAMSHLN--GHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp HHHHHHHHT--TCBCSSSBCEEECCSCC
T ss_pred HHHHHHHhC--CCeECCeEEEEEEecCc
Confidence 999998443 24779999999854433
No 178
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.90 E-value=3e-05 Score=72.02 Aligned_cols=76 Identities=11% Similarity=0.052 Sum_probs=66.4
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
...-|+|+|++..++.++|.+.|.+ .|.|..|+|.. +++||||+|.+++.|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q-~G~V~~~~l~~---------------------------~kGfaFVey~~~~eA~ 57 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQ-HGPLVSFHPYL---------------------------NQGIALCKYTTREEAN 57 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHH-HSCEEEEEEET---------------------------TTTEEEEEESSHHHHH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHh-hCCEEEEEEcC---------------------------CCcEEEEEECCHHHHH
Confidence 4567999999999999999999998 89999999853 5899999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCCCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGPEN 116 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~~~ 116 (1197)
.|+.+.. ..-++|+.|+|..+.++
T Consensus 58 ~Ai~~Ln--~~~l~gr~I~V~~A~e~ 81 (89)
T 2wbr_A 58 KAQMALN--NCVLANTTIFAESPSEN 81 (89)
T ss_dssp HHHHHHT--TEEETTEEEEEECCCHH
T ss_pred HHHHHhc--CCEECCcEEEEEECCHH
Confidence 9999775 46899999999866443
No 179
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.88 E-value=3.1e-05 Score=79.90 Aligned_cols=73 Identities=15% Similarity=0.323 Sum_probs=58.6
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhc---cc-------cEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEE
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENE---VG-------GVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAF 80 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~---~G-------~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 80 (1197)
..++|+|+|+|..++.++|.++|+.. .| .|..+.+ .+++++||
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~---------------------------~~~~g~af 55 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---------------------------NQDKNFAF 55 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE---------------------------ETTTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe---------------------------cCCCCEEE
Confidence 46899999999999999999999985 14 3444433 24679999
Q ss_pred EEecChHHHHHHHHhccCCceeecCeeeeeecC
Q 041430 81 VHFAMPTYVTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 81 V~F~~~~~a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
|+|.+.++|..|+.+- ...++|++|+|..+
T Consensus 56 V~F~~~~~A~~Al~l~---g~~~~g~~i~v~~~ 85 (198)
T 2yh0_A 56 LEFRSVDETTQAMAFD---GIIFQGQSLKIRRP 85 (198)
T ss_dssp EEESCSHHHHHHGGGT---TEEETTEEEEEECC
T ss_pred EEeCCHHHHHHHHHhc---CCEEcCceEEEeCC
Confidence 9999999999999443 45789999999953
No 180
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.88 E-value=2.6e-05 Score=82.77 Aligned_cols=74 Identities=19% Similarity=0.247 Sum_probs=63.6
Q ss_pred ccEEEEeCCC-ccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 12 DAQVSFGGFD-RNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 12 ~~~i~v~gf~-~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
.+||+|+|+| ..++.++|.+.|+. .|.|..|+|..+ .+++|||+|.++++|.
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~-~G~v~~v~i~~~--------------------------~~g~afV~f~~~~~A~ 56 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCL-YGNVEKVKFMKS--------------------------KPGAAMVEMADGYAVD 56 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTT-TSCEEEEEECTT--------------------------STTCEEEEESSHHHHH
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHh-cCCeEEEEEecC--------------------------CCCEEEEEECCHHHHH
Confidence 5799999999 89999999999986 899999988653 3799999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
.|+..... ..++|+.|+|..+.
T Consensus 57 ~Ai~~lng--~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 57 RAITHLNN--NFMFGQKMNVCVSK 78 (205)
T ss_dssp HHHHHHTT--CEETTEECEEEECS
T ss_pred HHHHHhCC--CEECCceEEEEEcc
Confidence 99986542 37889999999543
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.88 E-value=2.6e-05 Score=85.71 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=64.5
Q ss_pred cccEEEEeCCCccccHHHHH----HHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecCh
Q 041430 11 VDAQVSFGGFDRNVKAAELV----KYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMP 86 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~----~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~ 86 (1197)
-.++|+|+|+|..++.++|+ ++|+. .|.|..|++..+ +++++||||+|.+.
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~-~G~i~~v~~~~~------------------------~~~~g~afV~f~~~ 62 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQ-FGQILDILVSRS------------------------LKMRGQAFVIFKEV 62 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEEcCC------------------------CCcceEEEEEECCH
Confidence 47899999999999999987 66654 789999988754 67899999999999
Q ss_pred HHHHHHHHhccCCceeecCeeeeeecC
Q 041430 87 TYVTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 87 ~~a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
++|..|+.... ...++|+.|+|..+
T Consensus 63 ~~a~~A~~~l~--g~~~~g~~l~v~~a 87 (282)
T 3pgw_A 63 SSATNALRSMQ--GFPFYDKPMRIQYA 87 (282)
T ss_pred HHHHHHHHHhc--CCeeCCcEEEEEEe
Confidence 99999997654 35778999999854
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.87 E-value=2.2e-05 Score=86.64 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=66.1
Q ss_pred ccccEEEEeCCCcc-ccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCC-CCCccceEEEEecChH
Q 041430 10 LVDAQVSFGGFDRN-VKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDD-YEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~-~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~V~F~~~~ 87 (1197)
...++|+|+|+|.. ++.++|+++|+. .|.|..|+|..+ .. +++++++|||+|.+.+
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~~~---------------------~~~tg~~~g~afV~F~~~~ 265 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEG-FGSIEKINIPAG---------------------QKEHSFNNCCAFMVFENKD 265 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGG-GSCEEEEECCSC---------------------CC---CCCEEEEEEESSHH
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhc-cCCeeEEEEEec---------------------CCcCCCCceEEEEEeCCHH
Confidence 35689999999999 999999999997 799999988764 11 3689999999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeeecC
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
+|..|+ ... ...++|++|+|+.+
T Consensus 266 ~A~~A~-~l~--g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 266 SAERAL-QMN--RSLLGNREISVSLA 288 (292)
T ss_dssp HHHHHG-GGT--TEEETTEEEEEEEC
T ss_pred HHHHHH-Hhc--CCEECCcEEEEEEe
Confidence 999999 432 34789999999853
No 183
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.86 E-value=2e-05 Score=75.88 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=57.9
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-..+|+|+|+|..++.++|+++|+. +|.|..|.|.. . +||||+|++.++|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~-------------------------~---g~afV~f~~~~~a 64 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYR-------------------------D---GTGVVEFVRKEDM 64 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGG-GSCEEEEEECT-------------------------T---SEEEEEESSHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEec-------------------------C---CEEEEEECCHHHH
Confidence 34678999999999999999999997 89999988864 1 8999999999999
Q ss_pred HHHHHhccCCceeecCee-----eeee
Q 041430 90 TRAVDAAGRTELFLNGRA-----LKVS 111 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~-----lkv~ 111 (1197)
..|+..... ..++|+. ++|.
T Consensus 65 ~~Ai~~l~g--~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 65 TYAVRKLDN--TKFRSHEGETAYIRVK 89 (115)
T ss_dssp HHHHHHHTT--CBCCCTTSCCCBCEEE
T ss_pred HHHHHHhCC--CEECCcEeeeEEEEec
Confidence 999996543 3567766 6666
No 184
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.85 E-value=1.9e-05 Score=82.02 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=64.9
Q ss_pred cccEEEEeCCCc-cccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 11 VDAQVSFGGFDR-NVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 11 ~~~~i~v~gf~~-~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
-.++|+|+|+|. .++.++|.++|+. .|.|..|++..+ .+++|||+|.++++|
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~-~G~i~~v~i~~~--------------------------~~g~afV~f~~~~~a 54 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFN--------------------------KKENALVQMADGNQA 54 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHT-TCCCSEEECSTT--------------------------CSSCCEEECTTTHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEEeC--------------------------CCCEEEEEECCHHHH
Confidence 358999999999 9999999999987 798888888764 177999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeecCCCCC
Q 041430 90 TRAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
..|+..-. ...++|+.|+|..+....
T Consensus 55 ~~A~~~l~--~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 55 QLAMSHLN--GHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp HHHHHHHT--TCCCSSCCCEEEECCCCS
T ss_pred HHHHHHhC--CCeecCeEEEEEEecCCC
Confidence 99998443 236799999998654443
No 185
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.81 E-value=5.9e-05 Score=77.74 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=63.6
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
.+.+|+|+|++..++.++|.+.|+. .|.|.+++|.+. +++++|||+|.+.++|.
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~-fG~V~~V~i~~k-------------------------~~rgfAFVeF~d~~~A~ 98 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTK-------------------------NNQFQALLQYADPVSAQ 98 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHH-HSCEEEEEEEES-------------------------SSCEEEEEEESCHHHHH
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHh-cCCEEEEEEEeC-------------------------CCCCEEEEEECCHHHHH
Confidence 4677999999999999999999988 699999999764 36789999999999999
Q ss_pred HHHHhccCCceee-cCeeeeeecC
Q 041430 91 RAVDAAGRTELFL-NGRALKVSLG 113 (1197)
Q Consensus 91 ~a~~~a~~~~l~~-~~~~lkv~~~ 113 (1197)
.|+..-.. .-++ +++.|+|.-+
T Consensus 99 ~Ai~~LnG-~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 99 HAKLSLDG-QNIYNACCTLRIDFS 121 (164)
T ss_dssp HHHHHSTT-BCSSSSCSCEEEEEC
T ss_pred HHHHHhCC-CEecCCCcEEEEEEe
Confidence 99997643 3344 3589999843
No 186
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.79 E-value=4.4e-05 Score=74.19 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=62.3
Q ss_pred cccEEEE--eCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 11 VDAQVSF--GGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 11 ~~~~i~v--~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
.+++++| ||++..++.++|.++|+. .|.|..|.+.+ .++||||+|++.++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~-fG~v~~v~i~~---------------------------~rgfaFV~f~~~~~ 75 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPP---------------------------NKPYSFARYRTTEE 75 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHH-HSCEEEEECCT---------------------------TCSCEEEEESSHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHh-cCCeEEEEEeC---------------------------CCCEEEEEECCHHH
Confidence 5788999 889999999999999998 89998876642 26899999999999
Q ss_pred HHHHHHhccCCcee--e-cCeeeeeecCCCCC
Q 041430 89 VTRAVDAAGRTELF--L-NGRALKVSLGPENP 117 (1197)
Q Consensus 89 a~~a~~~a~~~~l~--~-~~~~lkv~~~~~~~ 117 (1197)
|..|+......+|+ + +|.+|.|...-+-|
T Consensus 76 A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 76 SKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp HHHHHHHTTTCEEECTTSCEEECEEEEESCCC
T ss_pred HHHHHHHhCCCEEccccCCCcEEEEEecccCc
Confidence 99999976544441 2 47888877433333
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.77 E-value=4.2e-05 Score=84.02 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=68.4
Q ss_pred ccccEEEEeCCCccc-cHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 10 LVDAQVSFGGFDRNV-KAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~-~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
...++|+|+|+|..+ +.++|+++|+. .|.|..|+|..+ ..++++++|||+|.+.++
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~-~G~i~~v~i~~~----------------------~~g~~~g~afV~f~~~~~ 238 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSA-VHSPTFCQLACG----------------------QDGQLKGFAVLEYETAEM 238 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCS-SSCCSEEEEEEC----------------------SSCCEEEEEEEECSSHHH
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhC-CCCeEEEEEEEC----------------------CCCCcccEEEEEeCCHHH
Confidence 457899999999996 89999999997 799999998875 246889999999999999
Q ss_pred HHHHHHhccCCceeecCeeeeeecCC
Q 041430 89 VTRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
|..|+..... ..++|+.|+|+.+.
T Consensus 239 A~~A~~~l~g--~~~~g~~l~v~~a~ 262 (284)
T 3smz_A 239 AEEAQQQADG--LSLGGSHLRVSFCA 262 (284)
T ss_dssp HHHHHHHHTT--CEETTEECEEEECC
T ss_pred HHHHHHHhCC--CccCCeEEEEEEec
Confidence 9999996532 36799999999643
No 188
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.76 E-value=0.00014 Score=69.31 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=66.4
Q ss_pred ccccEEEEeCCCc-----cccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEec
Q 041430 10 LVDAQVSFGGFDR-----NVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFA 84 (1197)
Q Consensus 10 ~~~~~i~v~gf~~-----~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~ 84 (1197)
..+++|.|.|+-. ..+.+||++.|+. .|.|..|+|..+ |. ..++++++|||+|+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~-~G~V~~v~i~~~---~~-----------------~~~~~~G~~FV~f~ 64 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEK-YGKVGKCVIFEI---PG-----------------APDDEAVRIFLEFE 64 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGG-GSCEEEEEEEEC---SS-----------------CCTTTSEEEEEEES
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHh-cCCEEEEEEecC---CC-----------------CCCCCcEEEEEEEC
Confidence 4678999999963 3478999999975 899999999875 11 12578999999999
Q ss_pred ChHHHHHHHHhccCCceeecCeeeeeecCCCCC
Q 041430 85 MPTYVTRAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 85 ~~~~a~~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
++++|..|+..... -+|+|+.|+|.....+.
T Consensus 65 ~~~~A~~Ai~~lnG--~~~~Gr~i~v~~a~~~~ 95 (105)
T 2pe8_A 65 RVESAIKAVVDLNG--RYFGGRVVKACFYNLDK 95 (105)
T ss_dssp SHHHHHHHHHHHTT--CEETTEECEEEECCHHH
T ss_pred CHHHHHHHHHHHCC--CEECCcEEEEEEcCHHH
Confidence 99999999985432 28899999999765544
No 189
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.75 E-value=4.8e-05 Score=83.19 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=66.3
Q ss_pred ccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHHH
Q 041430 12 DAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTR 91 (1197)
Q Consensus 12 ~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~~ 91 (1197)
.++|+|+|+|..++.++|.++|+. .|.|..|+|..+ +.++++++|||+|.+.++|..
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~----------------------~~g~~~g~afV~f~~~~~A~~ 152 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQ-FGPVEKAVVVVD----------------------DRGRATGKGFVEFAAKPPARK 152 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEE----------------------TTSCEEEEEEEEESSHHHHHH
T ss_pred CCcccccCCCCCCCHHHHHHHHHh-cCCeEEEEeeeC----------------------CCCCcCcEEEEEeCCHHHHHH
Confidence 468999999999999999999976 899999999875 246799999999999999999
Q ss_pred HHHhccCCceee--cCeeeeeecC
Q 041430 92 AVDAAGRTELFL--NGRALKVSLG 113 (1197)
Q Consensus 92 a~~~a~~~~l~~--~~~~lkv~~~ 113 (1197)
|+.....+.+++ .++++.|.+.
T Consensus 153 A~~~l~~~~~~~~~~~r~i~v~~~ 176 (261)
T 3sde_A 153 ALERCGDGAFLLTTTPRPVIVEPM 176 (261)
T ss_dssp HHHHHHHSCEESSSSCCBCEEEEC
T ss_pred HHHHhcCCeEEecCCCceEEEeec
Confidence 999874434433 3788888843
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.69 E-value=8.3e-05 Score=81.31 Aligned_cols=73 Identities=12% Similarity=0.230 Sum_probs=62.5
Q ss_pred ccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 10 ~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.-.++|+|+|+|.+++.++|.++|+. +|.|..|+|.. ++++|||+|.+.++|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~---------------------------~kg~afV~f~~~~~A 71 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFER-YGEPSEVFINR---------------------------DRGFGFIRLESRTLA 71 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGG-GCCCSEEEEET---------------------------TTTEEEEECSSHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEeC---------------------------CCcEEEEEECCHHHH
Confidence 45679999999999999999999977 89998888853 368999999999999
Q ss_pred HHHHHhccCCceeecCeeeeeec
Q 041430 90 TRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
..|+.... ...++|++|+|..
T Consensus 72 ~~A~~~l~--g~~i~g~~l~v~~ 92 (261)
T 3sde_A 72 EIAKAELD--GTILKSRPLRIRF 92 (261)
T ss_dssp HHHHHHHT--TCEETTEECEEEE
T ss_pred HHHHHHcC--CcEECCceeEeee
Confidence 99998443 2378999999984
No 191
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=97.69 E-value=4.5e-05 Score=72.51 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=57.6
Q ss_pred EeCCCccccHHHHHHHH-----------HhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecC
Q 041430 17 FGGFDRNVKAAELVKYL-----------ENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAM 85 (1197)
Q Consensus 17 v~gf~~~~~a~~l~~~l-----------e~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~ 85 (1197)
+.|.+..++.++|.+.+ ++..|.|..|+|... +.++++++|||+|.+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~----------------------~~~~~~G~~fV~f~~ 77 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN----------------------LGDHLVGNVYVKFRR 77 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCS----------------------SSSSSEEEEEEEESC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeC----------------------CCCCccEEEEEEECC
Confidence 56777788888777665 256899999999764 235799999999999
Q ss_pred hHHHHHHHHhccCCceeecCeeeeeecC
Q 041430 86 PTYVTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 86 ~~~a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
+++|..|+..... -.|+|+.|+|...
T Consensus 78 ~~~A~~A~~~lng--~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 78 EEDAEKAVIDLNN--RWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHHTT--CEETTEECCEEEC
T ss_pred HHHHHHHHHHHCC--CEECCEEEEEEEc
Confidence 9999999986532 3799999999754
No 192
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.63 E-value=7.3e-05 Score=72.92 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=60.6
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
..++|+|+|+ .++.++|.++|+. .|.|..|++. +++++|||+|.+.++|.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~-~G~I~~v~i~---------------------------~~kg~aFV~f~~~~~A~ 87 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD---------------------------PPRNCAFVTYEKMESAD 87 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHST-TCCCSCEEEE---------------------------TTTTEEEEECSSHHHHH
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHc-cCCEEEEEEe---------------------------CCCCEEEEEECCHHHHH
Confidence 5789999996 5999999999987 8988888774 36789999999999999
Q ss_pred HHHHhccCCceeecCeeeeeecCCC
Q 041430 91 RAVDAAGRTELFLNGRALKVSLGPE 115 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~~~lkv~~~~~ 115 (1197)
.|+..... ..++|+.|+|..+..
T Consensus 88 ~Ai~~lng--~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 88 QAVAELNG--TQVESVQLKVNIARK 110 (121)
T ss_dssp HHHHHHTT--CBCSSCBCEEEECCS
T ss_pred HHHHHhCC--CEECCeEEEEEEeCC
Confidence 99976543 367999999995443
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.58 E-value=8e-05 Score=77.27 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=61.4
Q ss_pred ccEEEEeCCCccccHHHHHHHHHhccc-cEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 12 DAQVSFGGFDRNVKAAELVKYLENEVG-GVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 12 ~~~i~v~gf~~~~~a~~l~~~le~~~G-~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
.++|+|+|+|..++.++|+++|+.. | .|..|++..+ .+++|||+|.+.++|.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~-G~~v~~v~i~~~--------------------------~~g~afV~f~~~~~A~ 172 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSN-GGVVKGFKFFQK--------------------------DRKMALIQMGSVEEAV 172 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHT-TSCCCEEEESST--------------------------TSSCEEEECSSHHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHc-CCCceEEEEEeC--------------------------CCcEEEEEeCCHHHHH
Confidence 7899999999999999999999995 9 8988888643 2689999999999999
Q ss_pred HHHHhccCCceeec-Ceeeeeec
Q 041430 91 RAVDAAGRTELFLN-GRALKVSL 112 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~-~~~lkv~~ 112 (1197)
.|+..... ..++ |+.|+|+.
T Consensus 173 ~A~~~l~g--~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 173 QALIDLHN--HDLGENHHLRVSF 193 (198)
T ss_dssp HHHHHHTS--SCCSSCCSCCEEE
T ss_pred HHHHHhcC--CccCCCCeEEEEe
Confidence 99996543 2456 99999984
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.56 E-value=0.00015 Score=77.74 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=61.5
Q ss_pred ccEEEEeCCCccccHHHHHHHHHhccc-cEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 12 DAQVSFGGFDRNVKAAELVKYLENEVG-GVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 12 ~~~i~v~gf~~~~~a~~l~~~le~~~G-~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
.++|+|+|+|..++.++|+++|+.. | .|..|++... ++++|||+|.+.++|.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~-G~~i~~v~i~~~--------------------------~~g~afV~f~~~~~A~ 203 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSN-GGVVKGFKFFQK--------------------------DRKMALIQMGSVEEAV 203 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTT-SCCEEEEEECSS--------------------------STTCEEEEESSHHHHH
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHc-CCCeeEEEEEEC--------------------------CCcEEEEEECCHHHHH
Confidence 6899999999999999999999995 9 8998888642 3689999999999999
Q ss_pred HHHHhccCCceeec-Ceeeeeec
Q 041430 91 RAVDAAGRTELFLN-GRALKVSL 112 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~-~~~lkv~~ 112 (1197)
.|+..... ..++ |+.|+|+.
T Consensus 204 ~Ai~~l~g--~~~~~g~~l~v~~ 224 (229)
T 2adc_A 204 QALIDLHN--HDLGENHHLRVSF 224 (229)
T ss_dssp HHHHHHTT--CBSSSSCBCEEEE
T ss_pred HHHHHHCC--CccCCCCeEEEEE
Confidence 99995543 2557 99999984
No 195
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.54 E-value=0.00017 Score=79.06 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=62.9
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
-.++|+|+|+|..++.++|+++|+. .|.|..|+|... .+++|||+|.+.++|.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~-~G~i~~v~~~~~--------------------------~~g~afV~f~~~~~A~ 258 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQ-FPGFKEVRLVPG--------------------------RHDIAFVEFDNEVQAG 258 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHh-cCCeEEEEEecC--------------------------CCcEEEEEeCCHHHHH
Confidence 4688999999999999999999997 799999999864 1579999999999999
Q ss_pred HHHHhccCCceeec-Ceeeeeec
Q 041430 91 RAVDAAGRTELFLN-GRALKVSL 112 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~-~~~lkv~~ 112 (1197)
.|+..... ..++ |+.|+|+-
T Consensus 259 ~A~~~l~g--~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 259 AARDALQG--FKITQNNAMKISF 279 (282)
T ss_pred HHHHHcCC--cEeCCCCEEEEEE
Confidence 99997643 3555 99999984
No 196
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.35 E-value=0.00074 Score=67.04 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=62.0
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccce-EEEEecChHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPH-AFVHFAMPTYV 89 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~V~F~~~~~a 89 (1197)
-+-.|+|+|.+..++.++|.+.|+. .|.|.+|+|... .+++ |||+|.+.++|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~-yG~V~~V~i~~~--------------------------~~gfqAFVef~~~~~A 79 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTK--------------------------NNQFQALLQYADPVSA 79 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTT-SSCEEEEEEEEE--------------------------TTEEEEEEEESCHHHH
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhC-cCCEEEEEEEcC--------------------------CCCcEEEEEECCHHHH
Confidence 4567889999999999999999997 799999988764 2466 99999999999
Q ss_pred HHHHHhccCCceeec-CeeeeeecC
Q 041430 90 TRAVDAAGRTELFLN-GRALKVSLG 113 (1197)
Q Consensus 90 ~~a~~~a~~~~l~~~-~~~lkv~~~ 113 (1197)
..|+..-.. .-++| ...|+|.-+
T Consensus 80 ~~Ai~~LnG-~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 80 QHAKLSLDG-QNIYNACCTLRIDFS 103 (130)
T ss_dssp HHHHHHHTT-CEEETTEEEEEEEEC
T ss_pred HHHHHHcCC-CeecCCCcEEEEEec
Confidence 999997753 44555 478888853
No 197
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.35 E-value=0.00096 Score=65.66 Aligned_cols=72 Identities=19% Similarity=0.110 Sum_probs=58.2
Q ss_pred ccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccce-EEEEecChHHHH
Q 041430 12 DAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPH-AFVHFAMPTYVT 90 (1197)
Q Consensus 12 ~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~V~F~~~~~a~ 90 (1197)
+-.|+|+|++..++.++|.+.|+. .|.|..|+|... .++ |||+|.+.++|.
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~-yG~V~~v~i~~~---------------------------~Gf~aFVef~~~~~A~ 76 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNP-VGKVQRIVIFKR---------------------------NGIQAMVEFESVLCAQ 76 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTT-TSCEEEEEEEES---------------------------SSEEEEEEESSHHHHH
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHh-cCCEEEEEEEeC---------------------------CCCEEEEEECCHHHHH
Confidence 345789999999999999999998 799999998542 265 999999999999
Q ss_pred HHHHhccCCceeecC-eeeeeec
Q 041430 91 RAVDAAGRTELFLNG-RALKVSL 112 (1197)
Q Consensus 91 ~a~~~a~~~~l~~~~-~~lkv~~ 112 (1197)
.|+..... .-++|+ ..|+|.-
T Consensus 77 ~A~~~LnG-~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 77 KAKAALNG-ADIYAGCCTLKIEY 98 (124)
T ss_dssp HHHHHHTT-CCCBTTBSEEEEEC
T ss_pred HHHHHhCC-CEecCCCeEEEEEE
Confidence 99987643 234543 6899884
No 198
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.33 E-value=0.0007 Score=64.63 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=61.0
Q ss_pred ccccccEEEEeCCCccc-----------cHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCcc
Q 041430 8 KLLVDAQVSFGGFDRNV-----------KAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVE 76 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~~-----------~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (1197)
+...+++|.|.|+-... +.++|+++|+. .|.|..|.|. + ..++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~-~G~v~~v~i~-~------------------------~~~~ 64 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK-FGQIRKLLLF-D------------------------RHPD 64 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG-TSCCSEEEEE-T------------------------TCTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc-cCCEeEEEEe-c------------------------CCCC
Confidence 33468899999983332 25799999986 8999888773 2 2378
Q ss_pred ceEEEEecChHHHHHHHHhccCCceeecCeeeeeecC
Q 041430 77 PHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLG 113 (1197)
Q Consensus 77 ~~a~V~F~~~~~a~~a~~~a~~~~l~~~~~~lkv~~~ 113 (1197)
++|||+|.+.++|..|+.... ...|+|+.|+|...
T Consensus 65 G~afV~f~~~~~A~~Ai~~ln--g~~~~gr~l~v~~a 99 (112)
T 2dit_A 65 GVASVSFRDPEEADYCIQTLD--GRWFGGRQITAQAW 99 (112)
T ss_dssp CEEEEECSCHHHHHHHHHHST--TCEETTEECEEEEC
T ss_pred EEEEEEECCHHHHHHHHHHcC--CCEECCcEEEEEEe
Confidence 999999999999999997654 24789999999953
No 199
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.29 E-value=0.00024 Score=75.41 Aligned_cols=62 Identities=5% Similarity=0.062 Sum_probs=53.3
Q ss_pred ccEEEEeCCCccccHHHHHHHHHhccccE--EEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHH
Q 041430 12 DAQVSFGGFDRNVKAAELVKYLENEVGGV--WRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYV 89 (1197)
Q Consensus 12 ~~~i~v~gf~~~~~a~~l~~~le~~~G~v--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a 89 (1197)
.++|+|+|+|.+++.++|+++|+. .|.| ..+++..+ ..+++++|||+|.+.+.|
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~-~G~v~~~~v~~~~~-----------------------~~~~~g~gfV~f~~~~~A 178 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDE-LGVKRPTSVKVFSG-----------------------KSERSSSGLLEWDSKSDA 178 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHH-HTCCCCSEEEECSC-----------------------CSSSSEEEEEECSSHHHH
T ss_pred cceEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEEEcC-----------------------CCCCceEEEEEeCCHHHH
Confidence 468999999999999999999998 8887 77777654 134569999999999999
Q ss_pred HHHHHhcc
Q 041430 90 TRAVDAAG 97 (1197)
Q Consensus 90 ~~a~~~a~ 97 (1197)
..|+....
T Consensus 179 ~~Ai~~ln 186 (205)
T 3tyt_A 179 LETLGFLN 186 (205)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 99998764
No 200
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.18 E-value=0.0011 Score=62.29 Aligned_cols=76 Identities=17% Similarity=0.136 Sum_probs=58.6
Q ss_pred cccEEEEeCCCccccHHHHH----HHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecCh
Q 041430 11 VDAQVSFGGFDRNVKAAELV----KYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMP 86 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~----~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~ 86 (1197)
+.|+|+|+|+|-.++.++|+ +.|++.=|.|-.+ . + ++|||.|.+.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----t------------------------g---G~AfV~F~~~ 56 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----T------------------------G---CSAILRFINQ 56 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----C------------------------T---TCEEEEESSH
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----e------------------------c---CEEEEEECCH
Confidence 55669999999999999966 5666632566544 2 2 9999999999
Q ss_pred HHHHHHHHhccCCceeecCeeeeeecCCCCCcc
Q 041430 87 TYVTRAVDAAGRTELFLNGRALKVSLGPENPFR 119 (1197)
Q Consensus 87 ~~a~~a~~~a~~~~l~~~~~~lkv~~~~~~~~~ 119 (1197)
|+|+.|+...... -+.|++++|+-+..++..
T Consensus 57 esA~~A~~~l~G~--~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 57 DSAERAQKRMENE--DVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp HHHHHHHHHHTTC--CSSSSCCEEESSCCSCCC
T ss_pred HHHHHHHHHhcCC--ccCCceEEEEecCCCcce
Confidence 9999999865432 577999999976666543
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=0.0012 Score=62.54 Aligned_cols=72 Identities=22% Similarity=0.144 Sum_probs=56.6
Q ss_pred ccEEEEeCCC-------ccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEec
Q 041430 12 DAQVSFGGFD-------RNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFA 84 (1197)
Q Consensus 12 ~~~i~v~gf~-------~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~ 84 (1197)
.+++.|.=-. ..++.++|.++|+. .|.|..|+|.. ++++||||+|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~-~G~V~~v~i~~--------------------------~~rGfaFVeF~ 62 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQK-YGEVLNLVLSS--------------------------KKPGTAVVEFA 62 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHT-TSCEEEEEEES--------------------------SSSSEEEEEES
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHh-cCCEEEEEEcc--------------------------CCCCEEEEEEC
Confidence 4455554433 45889999999988 89999998862 57899999999
Q ss_pred ChHHHHHHHHhccCCceeecCeeeeeecCC
Q 041430 85 MPTYVTRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 85 ~~~~a~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
+.++|..|+.. .. -+.+++|+|.-+.
T Consensus 63 ~~~~A~~Ai~~-~~---~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 63 TVKAAELAVQN-EV---GLVDNPLKISWLE 88 (100)
T ss_dssp CHHHHHHHHHT-CC---BCSSSBCEEECSS
T ss_pred CHHHHHHHHHh-cC---CCCCCeEEEEEcc
Confidence 99999999997 33 2578999998533
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.10 E-value=0.0014 Score=62.23 Aligned_cols=85 Identities=8% Similarity=0.017 Sum_probs=61.5
Q ss_pred cccEEEEeCC--Cccc--------cHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEE
Q 041430 11 VDAQVSFGGF--DRNV--------KAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAF 80 (1197)
Q Consensus 11 ~~~~i~v~gf--~~~~--------~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 80 (1197)
-++.|.+.|. |..+ ..+||++.++. .|.|..|+|... +.+ ...+++++||
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k-~G~V~~v~i~~~---~~~----------------~~~~~~G~~f 63 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-YGLVKSIEIPRP---VDG----------------VEVPGCGKIF 63 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT-TSCEEEEECCCC---BTT----------------BCCTTTTEEE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHc-cCCEEEEEEecc---CCC----------------CCcCCcEEEE
Confidence 4567788886 3333 23577777774 799999998764 111 0136889999
Q ss_pred EEecChHHHHHHHHhccCCceeecCeeeeeecCCCCC
Q 041430 81 VHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 81 V~F~~~~~a~~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
|+|+++++|..|+..... -+|+|+.|+|+..+.+.
T Consensus 64 V~f~~~~~A~~Ai~~lnG--~~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 64 VEFTSVFDCQKAMQGLTG--RKFANRVVVTKYCDPDS 98 (105)
T ss_dssp EEESSHHHHHHHHHHHTT--CEETTEECEEEEECHHH
T ss_pred EEECCHHHHHHHHHHhCC--CEeCCCEEEEEEeCHHH
Confidence 999999999999986642 38899999999655444
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=96.83 E-value=0.0027 Score=61.79 Aligned_cols=88 Identities=14% Similarity=0.225 Sum_probs=64.4
Q ss_pred cccEEEEeCCCcc-----ccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecC
Q 041430 11 VDAQVSFGGFDRN-----VKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAM 85 (1197)
Q Consensus 11 ~~~~i~v~gf~~~-----~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~ 85 (1197)
-+++|.+.|.-.. ...+||++.++. .|.|..|.|... + .+ ...+.+++++|||+|++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k-~G~V~~v~I~~~--~-~~--------------~~~~~~~~G~~FV~F~~ 80 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGK-FGAVNRVIIYQE--K-QG--------------EEEDAEIIVKIFVEFSI 80 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTT-TSCEEEEEEEEE--E-ES--------------SSTTCEEEEEEEEEESS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhc-cCCEeEEEEeec--C-CC--------------cccCCcceEEEEEEECC
Confidence 4788999997321 235778888874 799999999875 0 00 01235688999999999
Q ss_pred hHHHHHHHHhccCCceeecCeeeeeecCCCCCc
Q 041430 86 PTYVTRAVDAAGRTELFLNGRALKVSLGPENPF 118 (1197)
Q Consensus 86 ~~~a~~a~~~a~~~~l~~~~~~lkv~~~~~~~~ 118 (1197)
+++|..|+..... -+|+|+.|+|...+.+.+
T Consensus 81 ~e~A~~Ai~~LnG--r~f~GR~i~v~~~~~~~f 111 (118)
T 3ue2_A 81 ASETHKAIQALNG--RWFAGRKVVAEVYDQERF 111 (118)
T ss_dssp HHHHHHHHHHHTT--CEETTEECEEEEECHHHH
T ss_pred HHHHHHHHHHHCC--CEECCcEEEEEEcChHhc
Confidence 9999999986542 289999999996555443
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=96.80 E-value=0.002 Score=73.88 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=53.6
Q ss_pred cccccEEEEeC--CCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecCh
Q 041430 9 LLVDAQVSFGG--FDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMP 86 (1197)
Q Consensus 9 ~~~~~~i~v~g--f~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~ 86 (1197)
..-+++++||| ++..++.++|.+.|++ .|.|..+.+.. +++||||+|.+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G~V~~v~~~~---------------------------~kgfaFV~f~~~ 66 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPP---------------------------NKPYSFARYRTT 66 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHT-TSCEEEEECCT---------------------------TCSEEEEEESSH
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHh-cCCeEEEEEeC---------------------------CCCEEEEEECCH
Confidence 34578999988 5778999999999999 79997765421 468999999999
Q ss_pred HHHHHHHHhccCCce
Q 041430 87 TYVTRAVDAAGRTEL 101 (1197)
Q Consensus 87 ~~a~~a~~~a~~~~l 101 (1197)
|.|+.|++.....++
T Consensus 67 ~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 67 EESKRAYVTLNGKEV 81 (345)
T ss_dssp HHHHHHHHHTTTCEE
T ss_pred HHHHHHHHHhCCCcc
Confidence 999999998765455
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.01 E-value=0.011 Score=57.88 Aligned_cols=77 Identities=12% Similarity=0.129 Sum_probs=64.8
Q ss_pred ccccccEEEEeCCCcc-ccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecC-
Q 041430 8 KLLVDAQVSFGGFDRN-VKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAM- 85 (1197)
Q Consensus 8 ~~~~~~~i~v~gf~~~-~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~- 85 (1197)
.-....-|+|+|.+.. ++.++|+++|.. .|.|--|.+... ...|||.|.+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~-~G~V~~Vd~~~g---------------------------~~tgfVrf~~~ 65 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSN-HGEIKWIDFVRG---------------------------AKEGIILFKEK 65 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCS-SCCEEEEECCTT---------------------------CSEEEEEESSC
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHh-cCCEEEEEEecC---------------------------CCEEEEEECCC
Confidence 3446678999999999 999999999997 899988887654 1239999999
Q ss_pred hHHHHHHHHhccCCceeecCeeeeeec
Q 041430 86 PTYVTRAVDAAGRTELFLNGRALKVSL 112 (1197)
Q Consensus 86 ~~~a~~a~~~a~~~~l~~~~~~lkv~~ 112 (1197)
+++|..|+..+..+++-+.++.+++..
T Consensus 66 ~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 66 AKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp HHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred hHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 789999999888888999998888763
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=95.95 E-value=0.0082 Score=58.09 Aligned_cols=78 Identities=12% Similarity=0.173 Sum_probs=54.2
Q ss_pred ccEEEEeCCCccc----------cHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEE
Q 041430 12 DAQVSFGGFDRNV----------KAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFV 81 (1197)
Q Consensus 12 ~~~i~v~gf~~~~----------~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V 81 (1197)
++.|.+.|.=... ..+||++.++ ..|.|..|.|... .++++|||
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~-kfG~V~~v~i~~~-------------------------~~~G~~fV 60 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECN-KHGGVIHIYVDKN-------------------------SAQGNVYV 60 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHT-TTTCCSEEEECTT-------------------------CTTCCEEE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHh-ccCCEEEEEEecC-------------------------CCcEEEEE
Confidence 4556666653322 2245555554 3688888877543 25899999
Q ss_pred EecChHHHHHHHHhccCCceeecCeeeeeecCCCCC
Q 041430 82 HFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENP 117 (1197)
Q Consensus 82 ~F~~~~~a~~a~~~a~~~~l~~~~~~lkv~~~~~~~ 117 (1197)
+|.++++|..|+..... -+|+|+.|+|...+.+.
T Consensus 61 ~f~~~e~A~~Ai~~lnG--~~f~GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 61 KCPSIAAAIAAVNALHG--RWFAGKMITAAYVPLPT 94 (114)
T ss_dssp ECSSHHHHHHHHHHHTT--CEETTEECEEEEECHHH
T ss_pred EECCHHHHHHHHHHhCC--CEECCEEEEEEEEcHHH
Confidence 99999999999986542 38999999999655543
No 207
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.48 E-value=0.041 Score=52.28 Aligned_cols=78 Identities=22% Similarity=0.232 Sum_probs=60.9
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhc--cccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecCh
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENE--VGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMP 86 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~--~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~ 86 (1197)
..+..+|.|.|+|..+..+-|.-|||+. -|.+-.-.++.. . .-|.|.|.++
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-------------------------~--~~AvItF~d~ 57 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-------------------------G--CGGVLTFREP 57 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-------------------------T--TEEEEEESSH
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-------------------------C--CcEEEEEcCh
Confidence 3577899999999999999999999995 354333333332 1 5689999999
Q ss_pred HHHHHHHHhccCCceeecCeeeeeecCCCC
Q 041430 87 TYVTRAVDAAGRTELFLNGRALKVSLGPEN 116 (1197)
Q Consensus 87 ~~a~~a~~~a~~~~l~~~~~~lkv~~~~~~ 116 (1197)
+.|..++... ...|++..|+|.+.+..
T Consensus 58 ~va~rVL~k~---~H~L~~~~LsV~P~~~~ 84 (104)
T 2dhx_A 58 ADAERVLAQA---DHELHGAQLSLRPAPPR 84 (104)
T ss_dssp HHHHHHHTCS---CCBSSSSBCEEEECCCC
T ss_pred HHHHHHhcCC---cceecCeEEEEEcCCCC
Confidence 9999998765 56899999999964443
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=93.97 E-value=0.05 Score=57.62 Aligned_cols=45 Identities=22% Similarity=0.457 Sum_probs=38.1
Q ss_pred CCCccceEEEEecChHHHHHHHHh-ccCCceeecCeeeeeecCCCCCcc
Q 041430 72 YEKVEPHAFVHFAMPTYVTRAVDA-AGRTELFLNGRALKVSLGPENPFR 119 (1197)
Q Consensus 72 ~~~~~~~a~V~F~~~~~a~~a~~~-a~~~~l~~~~~~lkv~~~~~~~~~ 119 (1197)
++++++++||+|.+.++|..|+.. .|+ +|+|+.|.|...+++.+.
T Consensus 171 ~~~~~G~~fv~f~~~~~a~~a~~~l~gr---~~~gr~i~~~~~~~~~f~ 216 (222)
T 3dxb_A 171 DAEIIVKIFVEFSIASETHKAIQALNGR---WFAGRKVVAEVYDQERFD 216 (222)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTC---BSSSSBCEEEECCHHHHH
T ss_pred CcCceeEEEEEECCHHHHHHHHHHhcCc---eECCeEEEEEEcCHHHhh
Confidence 458999999999999999999985 445 899999999977666654
No 209
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.07 E-value=0.21 Score=46.49 Aligned_cols=55 Identities=22% Similarity=0.334 Sum_probs=45.3
Q ss_pred HHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHHHHHHhccCCceeecCe
Q 041430 27 AELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGR 106 (1197)
Q Consensus 27 ~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~a~~~~l~~~~~ 106 (1197)
.+|.+-|.+ .|.|.-+|+-.. + +||.|.+.++|..|+++-|. -++|+
T Consensus 30 ~~L~~~F~~-~G~Vi~vr~~~d-------------------------~----~fVtF~d~~sAlaAi~mnG~---~v~Gr 76 (91)
T 2dnr_A 30 DELLQQFAS-FGEVILIRFVED-------------------------K----MWVTFLEGSSALNVLSLNGK---ELLNR 76 (91)
T ss_dssp HHHHHHHHT-TCCEEEEEECSS-------------------------S----EEEEESSHHHHHHGGGGTTC---EETTE
T ss_pred HHHHHHHHh-CCCeEEEEEecC-------------------------C----EEEEECChHHHHHHHhcCCe---EeCCe
Confidence 457777777 789888888875 1 89999999999999996654 79999
Q ss_pred eeeeecCC
Q 041430 107 ALKVSLGP 114 (1197)
Q Consensus 107 ~lkv~~~~ 114 (1197)
.|||.+..
T Consensus 77 ~LkV~lkt 84 (91)
T 2dnr_A 77 TITIALKS 84 (91)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99999544
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.90 E-value=0.23 Score=46.52 Aligned_cols=54 Identities=28% Similarity=0.388 Sum_probs=46.0
Q ss_pred HHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHHHHHHhccCCceeecCe
Q 041430 27 AELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGR 106 (1197)
Q Consensus 27 ~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~a~~~~l~~~~~ 106 (1197)
.+|++.|.+ .|.|.-+|+-++ + +||.|.+.++|..|+++-|. -++|+
T Consensus 39 ~~L~~~F~~-~G~Vilvr~v~d-------------------------~----~fVtF~d~~sAl~AI~ldG~---~v~Gr 85 (95)
T 1ufw_A 39 TELMQTLGS-YGTIVLVRINQG-------------------------Q----MLVTFADSHSALSVLDVDGM---KVKGR 85 (95)
T ss_dssp HHHHHHHHH-HSCCSEEEEETT-------------------------E----EEEECSCSHHHHHHHHGGGS---EETTE
T ss_pred HHHHHHHHH-CCCEEEEEEecC-------------------------c----EEEEEcChHHHHHHHhcCCe---eeCCe
Confidence 458888887 899888898875 1 99999999999999997654 89999
Q ss_pred eeeeecC
Q 041430 107 ALKVSLG 113 (1197)
Q Consensus 107 ~lkv~~~ 113 (1197)
.|||++.
T Consensus 86 ~L~V~~k 92 (95)
T 1ufw_A 86 AVKISGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999953
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=82.58 E-value=5.7 Score=38.68 Aligned_cols=71 Identities=15% Similarity=0.264 Sum_probs=54.3
Q ss_pred cccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHH
Q 041430 9 LLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88 (1197)
Q Consensus 9 ~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~ 88 (1197)
..-.+-|.|+|||... +..|..+|++ +|.+-..+. . .....--|+|.++.+
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~-~G~Iv~~~~-~--------------------------~~~NWihI~Y~s~~~ 71 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQ-YGNILKHVM-S--------------------------NTGNWMHIRYQSKLQ 71 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHT-TSCEEEEEE-C--------------------------SSSSEEEEEESSHHH
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHh-hCcEEEecc-C--------------------------CCCCeEEEEeCCHHH
Confidence 3456789999999995 8889999998 998776554 1 123568899999999
Q ss_pred HHHHHHhccCCceeec-Ceeeeee
Q 041430 89 VTRAVDAAGRTELFLN-GRALKVS 111 (1197)
Q Consensus 89 a~~a~~~a~~~~l~~~-~~~lkv~ 111 (1197)
|..||..-|+ +++ +--+=|.
T Consensus 72 A~rAL~kNG~---ii~g~~mIGV~ 92 (119)
T 1wwh_A 72 ARKALSKDGR---IFGESIMIGVK 92 (119)
T ss_dssp HHHHHTTTTC---EETTTEECEEE
T ss_pred HHHHHHhCCe---EecCCEEEEEE
Confidence 9999998764 666 4555565
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=76.90 E-value=6.3 Score=38.01 Aligned_cols=71 Identities=10% Similarity=0.290 Sum_probs=55.3
Q ss_pred ccEEEEeCCCccccHHHHHHHHHhcc----ccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChH
Q 041430 12 DAQVSFGGFDRNVKAAELVKYLENEV----GGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPT 87 (1197)
Q Consensus 12 ~~~i~v~gf~~~~~a~~l~~~le~~~----G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~ 87 (1197)
.+||.+.|+|-+|+..-+..|+|.+. |....+-|-.+ ++ =|+|.|++..
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----------------------H~----GAivef~d~~ 73 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----------------------FN----GAIIIFRDSK 73 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----------------------TT----EEEEECSCHH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----------------------CC----ceEEEEccch
Confidence 67999999999999999999999973 44444444433 33 4999999999
Q ss_pred HHHHHHHhccCCceeecCeeeeee
Q 041430 88 YVTRAVDAAGRTELFLNGRALKVS 111 (1197)
Q Consensus 88 ~a~~a~~~a~~~~l~~~~~~lkv~ 111 (1197)
+|..|..+-. .+-|+|+.|++.
T Consensus 74 ~AgKasLaL~--G~ef~gr~Lr~g 95 (117)
T 2l9w_A 74 FAAKMLMILN--GSQFQGKVIRSG 95 (117)
T ss_dssp HHHHHHHHHS--SEEETTEEEEEE
T ss_pred hhHHHHhhcC--CeeecCeEEEec
Confidence 9888875432 357889999987
No 213
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=66.05 E-value=4.7 Score=39.77 Aligned_cols=24 Identities=0% Similarity=-0.043 Sum_probs=21.4
Q ss_pred CCccceEEEEecChHHHHHHHHhc
Q 041430 73 EKVEPHAFVHFAMPTYVTRAVDAA 96 (1197)
Q Consensus 73 ~~~~~~a~V~F~~~~~a~~a~~~a 96 (1197)
.+++++|||+|+++++|..|+...
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~ 33 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQY 33 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhh
Confidence 368999999999999999999654
No 214
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=54.08 E-value=40 Score=33.39 Aligned_cols=79 Identities=16% Similarity=0.304 Sum_probs=49.5
Q ss_pred cEEEEeCCCccccHHHHHHHHHhccccEEE-EEE-eec------CCCCCCCCCccccccccccccCCCCCccceEEEEec
Q 041430 13 AQVSFGGFDRNVKAAELVKYLENEVGGVWR-CRL-KTS------CTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFA 84 (1197)
Q Consensus 13 ~~i~v~gf~~~~~a~~l~~~le~~~G~v~~-~~l-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~ 84 (1197)
+-|.|.|||... +..+.++|++ +|.+-. ... +.+ -++++.||-|. -.....|+|.
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~-~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~---------------g~NWikItYd 70 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQE-FGTILEDFEVLRKPQAMTVGLQDRQFVPIFS---------------GNSWTKITYD 70 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGG-GSCBCSCCGGGCCC-----------CCCCCE---------------ETTEEEEEBS
T ss_pred eEEEEEecCHHH-HHHHHHHHHh-hceEeeeccccccccccccccccccccCccC---------------CCcEEEEEcC
Confidence 568899997765 5677788888 586311 000 000 00112222111 2345799999
Q ss_pred ChHHHHHHHHhccCCceeecCeeeeee
Q 041430 85 MPTYVTRAVDAAGRTELFLNGRALKVS 111 (1197)
Q Consensus 85 ~~~~a~~a~~~a~~~~l~~~~~~lkv~ 111 (1197)
++.+|.+|+..-|+ +++|..+=|.
T Consensus 71 s~~~A~rAL~~NG~---ii~G~mIGV~ 94 (132)
T 3p3d_A 71 NPASAVDALLENGA---VFNGVLLGVI 94 (132)
T ss_dssp SHHHHHHHHTTTTC---EETTEECEEE
T ss_pred CHHHHHHHHHhCCe---EeCcEEEEEE
Confidence 99999999999886 7899877776
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=47.26 E-value=16 Score=34.39 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=48.2
Q ss_pred ccccccccccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEe
Q 041430 4 EGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHF 83 (1197)
Q Consensus 4 ~~~~~~~~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F 83 (1197)
+|.+.+..+.-|-+-+||+.....||.+-|... |.| ..+ |---.+|+|-|
T Consensus 7 ~g~d~~p~r~HVf~l~FP~ewKt~DI~~lFs~f-ggv-----~I~------------------------WidDTsAlvvf 56 (100)
T 1whv_A 7 GGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAF-GNI-----QIS------------------------WIDDTSAFVSL 56 (100)
T ss_dssp CCSCCCCCCCSEEEEECCTTCCHHHHHHHHTTT-CSC-----CCE------------------------EEETTEEEEEC
T ss_pred CCCCCCCCCCeEEEEeCChhhhhHHHHHHhhcc-CCE-----EEE------------------------EEcCCeEEEEe
Confidence 344445555556656999999999999999984 522 222 56678999999
Q ss_pred cChHHHHHHHHhc
Q 041430 84 AMPTYVTRAVDAA 96 (1197)
Q Consensus 84 ~~~~~a~~a~~~a 96 (1197)
.+++.|..|++..
T Consensus 57 ~~~~~a~~al~~i 69 (100)
T 1whv_A 57 SQPEQVQIAVNTS 69 (100)
T ss_dssp SCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhc
Confidence 9999999999964
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=45.14 E-value=11 Score=44.86 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=41.2
Q ss_pred cccEEEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHH
Q 041430 11 VDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVT 90 (1197)
Q Consensus 11 ~~~~i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~ 90 (1197)
.-++|-|. +|+.++.++|.+|| +..|.|...-.-.+ ++ -||.|+|.+.+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~-~~~g~i~~~~~~~~-----------------------~g---~~~~vef~~~~~~~ 103 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYL-SQFGPINNHFFYES-----------------------FG---LYAVVEFCQKESIG 103 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHH-GGGSCCCCEEEECS-----------------------SS---EEEEEECC---CCH
T ss_pred hcceEEEE-cCCCCCHHHHHHHH-HhcCCcceEEEEcc-----------------------CC---eEEEEEeCCHHHHH
Confidence 45789898 79999999999999 56898766655544 22 89999999999999
Q ss_pred HHHHhc
Q 041430 91 RAVDAA 96 (1197)
Q Consensus 91 ~a~~~a 96 (1197)
.+++.+
T Consensus 104 ~~~~~~ 109 (464)
T 3pq1_A 104 SLQNGT 109 (464)
T ss_dssp HHHSSC
T ss_pred HHHhcc
Confidence 877664
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=43.30 E-value=17 Score=34.30 Aligned_cols=53 Identities=25% Similarity=0.344 Sum_probs=42.4
Q ss_pred EEEeCCCccccHHHHHHHHHhccccEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEEEEecChHHHHHHHH
Q 041430 15 VSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVD 94 (1197)
Q Consensus 15 i~v~gf~~~~~a~~l~~~le~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~ 94 (1197)
|-+-+||+.....||..-|.. .|. +..+ |-.-++|+|-|.+++.|..|++
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~-fgg-----v~I~------------------------WidDTsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSA-FGN-----IQIS------------------------WIDDTSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTT-SEE-----EEEE------------------------EEETTEEEEEEEEECHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHHhc-cCC-----EEEE------------------------EEcCCeEEEEecCHHHHHHHHH
Confidence 444499999999999999988 462 2233 5567899999999999999999
Q ss_pred hcc
Q 041430 95 AAG 97 (1197)
Q Consensus 95 ~a~ 97 (1197)
...
T Consensus 58 ~i~ 60 (101)
T 3ctr_A 58 TSK 60 (101)
T ss_dssp HHT
T ss_pred hcc
Confidence 643
No 218
>2j7n_A RNA-dependent RNA polymerase; RNAI response, RNA-directed RNA polymerase, hydrolase; 2.30A {Neurospora crassa} PDB: 2j7o_A
Probab=31.62 E-value=1.1 Score=57.87 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=20.1
Q ss_pred hhHHHHHHHHhhCCeEEeeEEEEEEEeecCCCCcCceEE
Q 041430 485 TRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWF 523 (1197)
Q Consensus 485 ~~i~~rv~~~L~~Gi~I~gR~y~FLa~S~SqlR~~s~wF 523 (1197)
+.++.|+..++.+|+.|++++|+|+++ ||+|++++|.
T Consensus 226 ~~~~~Rv~~f~~~G~~i~~~~f~fl~~--s~lre~s~~~ 262 (1022)
T 2j7n_A 226 PIIKERVHFFAETGITFRPDVFKTRSV--VPAEEPVEQR 262 (1022)
T ss_dssp CCCEEEEEEEEEEETTCBCCCC---------------CC
T ss_pred ccccceEEEEeccCccccCcccccccc--cccccccccc
Confidence 345567888999999999999999999 7999999986
No 219
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=28.26 E-value=1.5e+02 Score=27.99 Aligned_cols=82 Identities=15% Similarity=0.246 Sum_probs=54.2
Q ss_pred cEEEEeCCCccccHHH--HHHHHHhccc----------cEEEEEEeecCCCCCCCCCccccccccccccCCCCCccceEE
Q 041430 13 AQVSFGGFDRNVKAAE--LVKYLENEVG----------GVWRCRLKTSCTPSESYPDFYVTNTAEVRKTDDYEKVEPHAF 80 (1197)
Q Consensus 13 ~~i~v~gf~~~~~a~~--l~~~le~~~G----------~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 80 (1197)
+-|++-|+|.+...+. +..+|+..+. .+-.=+..-+ |.+- +.-.....|-.
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rs--p~~~---------------~~kr~tPRhII 66 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRT--PQRY---------------SSRRATPRHII 66 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEE--SSSC---------------CSSCCSCCEEE
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcC--CCcc---------------CCCCCCCCeEE
Confidence 4588999999855444 5556555532 1112222222 2221 11233567999
Q ss_pred EEecChHHHHHHHHhccCC-ceeecCeeeeee
Q 041430 81 VHFAMPTYVTRAVDAAGRT-ELFLNGRALKVS 111 (1197)
Q Consensus 81 V~F~~~~~a~~a~~~a~~~-~l~~~~~~lkv~ 111 (1197)
|.|..-.....+|.+|.+. .+-|.|.+++++
T Consensus 67 vK~~~~~~KErILkaar~k~~vtykg~pirls 98 (100)
T 2w7a_A 67 VRFTKVEMKEKMLRAAREKGRVTLKGKPIRLT 98 (100)
T ss_dssp EEESCHHHHHHHHHHHHHHCCEEETTEEEEEE
T ss_pred EEecccccHHHHHHHHHHhCceeeCCcceeec
Confidence 9999999999999999865 589999999988
No 220
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A 2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Probab=25.17 E-value=20 Score=45.89 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=37.6
Q ss_pred EEee-eEEEEeCCCCCCCcceEEEEecCCCCCcCCCeEEeCCCCCCCcccccC--CCCCCCCeEEEe
Q 041430 810 VIKG-FVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEAS--GSDLDGDLYFVT 873 (1197)
Q Consensus 810 vi~G-~VlV~RnP~lHPGDIr~v~AVd~P~L~hL~dvIVFp~kG~Rplps~lS--GGDLDGD~y~Vi 873 (1197)
++.| .|+.-|.|.||.--||=++++=.|. +-=|=||.-|+ ..|+|||+-.|-
T Consensus 411 l~dgd~VLlNRqPTLHr~si~a~~~~l~~g------------ktirlhp~vC~~yNADFDGDeMnvH 465 (880)
T 4ayb_A 411 LTDGDVVLFNRQPSLHRISMMAHRVRVLKG------------LTFRLNLLVCPPYNADFDGDEMNLH 465 (880)
T ss_dssp CCTTCEEEEECSSCCSGGGEEEEEEEECSS------------SSEEECGGGHHHHTCCSSSCEEEEE
T ss_pred eecCcEEEecCCCcccccceeeeeeecccC------------ceeeeccccccccccCcccceeEEe
Confidence 4456 5899999999999999999876663 11122344443 579999999864
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=24.43 E-value=65 Score=31.26 Aligned_cols=40 Identities=3% Similarity=-0.004 Sum_probs=29.8
Q ss_pred CCccceEEEEecChHHHHHHHHhccCCceeecCeeeeeecCC
Q 041430 73 EKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGP 114 (1197)
Q Consensus 73 ~~~~~~a~V~F~~~~~a~~a~~~a~~~~l~~~~~~lkv~~~~ 114 (1197)
.+..++++|+|+++++|..|+....++. .++| .+++..+.
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~-~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDN-GVDG-EWTYDDAT 49 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHH-TCCC-EEEEETTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCC-CCCC-ceeccccc
Confidence 4678999999999999999997652212 4556 88887443
No 222
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Probab=21.98 E-value=41 Score=45.02 Aligned_cols=52 Identities=29% Similarity=0.411 Sum_probs=37.8
Q ss_pred EEee-eEEEEeCCCCCCCcceEEEEecCCCCCcCCCeEEeCCCCCCCcccccC--CCCCCCCeEEEe
Q 041430 810 VIKG-FVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEAS--GSDLDGDLYFVT 873 (1197)
Q Consensus 810 vi~G-~VlV~RnP~lHPGDIr~v~AVd~P~L~hL~dvIVFp~kG~Rplps~lS--GGDLDGD~y~Vi 873 (1197)
++.| .|+.-|.|.||.--||=++++=.|. +-=|=||.-|+ ..|+|||+-.|-
T Consensus 694 vidgd~VLlNRqPTLHRlSIqAf~~kl~~g------------kTiRLhplVC~pyNADFDGDEMnvH 748 (1524)
T 2a6h_D 694 VIHGKVVLLNRAPTLHRLGIQAFQPVLVEG------------QSIQLHPLVCEAFNADFDGDQMAVH 748 (1524)
T ss_dssp HSTTCCEEEECSSCCSGGGEEEEEEEEESS------------SCEEECSGGGTTTTCCTTTCEEEEE
T ss_pred eccCceEEEccCCcccccccceeEEEEcCC------------ccceeChhhcCCccCCcccceeeEe
Confidence 4567 6999999999999999998864332 22233444554 589999999874
No 223
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=21.16 E-value=37 Score=46.43 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=39.4
Q ss_pred eEEee-eEEEEeCCCCCCCcceEEEEecCCCCCcCCCeEEeCCCCCCCcccccC--CCCCCCCeEEEe
Q 041430 809 QVIKG-FVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEAS--GSDLDGDLYFVT 873 (1197)
Q Consensus 809 ~vi~G-~VlV~RnP~lHPGDIr~v~AVd~P~L~hL~dvIVFp~kG~Rplps~lS--GGDLDGD~y~Vi 873 (1197)
.++.| .|++-|.|.||.--||=.+++-.|. +-=|=||.-|+ ..|+|||+-.|-
T Consensus 435 ~l~~gd~VllNRqPTLHr~si~a~~~~v~~~------------~tirlnp~vC~~yNADFDGDeMnvH 490 (1733)
T 1twf_A 435 HIMDNDPVLFNRQPSLHKMSMMAHRVKVIPY------------STFRLNLSVTSPYNADFDGDEMNLH 490 (1733)
T ss_dssp ECCTTCEEEEECSSCCSGGGEEEEEEEEESS------------SSEEECGGGHHHHTCCSSSCEEEEE
T ss_pred eeccCCEEEEeCCCccccccceeEEEEEccC------------CeEEeChhhcCCCCccchhhhhhhh
Confidence 45567 6999999999999999888765442 32344555555 589999999876
No 224
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=20.49 E-value=70 Score=42.44 Aligned_cols=52 Identities=29% Similarity=0.342 Sum_probs=37.6
Q ss_pred Eee-eEEEEeCCCCCCCcceEEEEecCCCCCcCCCeEEeCCCCCCCcccccC--CCCCCCCeEEEee
Q 041430 811 IKG-FVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEAS--GSDLDGDLYFVTW 874 (1197)
Q Consensus 811 i~G-~VlV~RnP~lHPGDIr~v~AVd~P~L~hL~dvIVFp~kG~Rplps~lS--GGDLDGD~y~ViW 874 (1197)
+.| .|+.-|.|+||.--||=++++-.|. +-=|=||.-|+ +.|+|||+..|--
T Consensus 416 i~gd~VLlNRqPTLHr~sIma~~~~l~~~------------ktirlnp~vC~~yNADFDGDeMnvHv 470 (1407)
T 3lu0_D 416 IREHPVLLNRAPTLHRLGIQAFEPVLIEG------------KAIQLHPLVCAAYNADFDGDQMAVHV 470 (1407)
T ss_dssp TTSCCEEEEESSCCSGGGEEEEEEEEESS------------SSEEECTGGGGTTTCCSSSCEEEEEC
T ss_pred hhceeeeecCCcccccccceeeeEEecCC------------ceEEeChhhcccccCCcccceeeeec
Confidence 345 5999999999999999998864443 22233455554 5899999998753
Done!