BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041432
         (425 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VYO|A Chain A, Chitin Deacetylase Family Member From Encephalitozoon
           Cuniculi
          Length = 254

 Score = 32.7 bits (73), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 298 RGIVTVVRTFSPTHFEHGSWDTGGICNRTKPSDERQIIWVGEPWNIRKIQVEETERMGKE 357
           RG++ V  TF P  ++    +   +   + P     II + +    ++      E M K 
Sbjct: 145 RGVLPVGYTFCPYDYDDPVGEFESMIEGSDPKHHSFIILMHDG---QEADTSRLENMVKI 201

Query: 358 GKEQGKSFVAMDVTKAMLMRPDGHPGDYWGNLRNKDFRDCLHWCLP 403
           GK++G  FV MD     L    G PGD   +LR K         LP
Sbjct: 202 GKDKGYRFVNMD---ECLQGYKGAPGDPELSLRGKGVESIGKGFLP 244


>pdb|3HHT|B Chain B, A Mutant Of The Nitrile Hydratase From Geobacillus
           Pallidus Having Enhanced Thermostability
          Length = 229

 Score = 28.5 bits (62), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 168 KEEVPKFVYKDSAEQNRIWHFPEHDFILMNLWSRFL 203
           K E P+++Y+   E   +W + + D + ++LW  ++
Sbjct: 189 KGENPQYLYRVRFEAEELWGYKQKDSVYIDLWESYM 224


>pdb|2DPP|B Chain B, Crystal Structure Of Thermostable Bacillus Sp. Rapc8
           Nitrile Hydratase
          Length = 229

 Score = 28.5 bits (62), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 168 KEEVPKFVYKDSAEQNRIWHFPEHDFILMNLWSRFL 203
           K E P+++Y+   E   +W + + D + ++LW  ++
Sbjct: 189 KGENPQYLYRVRFEAEELWGYKQKDSVYIDLWESYM 224


>pdb|3B0H|A Chain A, Assimilatory Nitrite Reductase (Nii4) From Tobbaco Root
 pdb|3B0H|B Chain B, Assimilatory Nitrite Reductase (Nii4) From Tobbaco Root
          Length = 588

 Score = 28.1 bits (61), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 336 WVGEPWNIRKIQVEETERMGKEGKEQGKSFVAMDVTKAMLMRPDGHPGDYW 386
           W G P +  ++QV +   MG   +++GK+    DV     +  D H GD +
Sbjct: 505 WTGCPNSCAQVQVADIGFMGCLTRKEGKTVEGADVYLGGRIGSDSHLGDVY 555


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.140    0.457 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,804,837
Number of Sequences: 62578
Number of extensions: 583978
Number of successful extensions: 903
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 898
Number of HSP's gapped (non-prelim): 6
length of query: 425
length of database: 14,973,337
effective HSP length: 102
effective length of query: 323
effective length of database: 8,590,381
effective search space: 2774693063
effective search space used: 2774693063
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)