BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041437
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 161 bits (407), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 106/150 (70%)
Query: 6 NKVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDG 65
K+ET VE+KA A KFH +F+ KPH + SP +IQGCDL EG+WG G I+ W Y HDG
Sbjct: 17 GKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDG 76
Query: 66 SPQIAKEIMEVIDNENYITNYKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEK 125
++AKE +E ++ + + ++VIEG+L++ YKSF T++VTPK GS+VHW EYEK
Sbjct: 77 EAKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYEK 136
Query: 126 LNEDVPDPTGKLQMVIDVAKDIDAHLLSQQ 155
++E+V P LQ ++V+K+ID HLL+++
Sbjct: 137 ISEEVAHPETLLQFCVEVSKEIDEHLLAEE 166
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 35 MSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKVIEGNLL 94
++PQ+I+ ++LEG+ G PG I + K ++ ID ENY +Y +IEG+ L
Sbjct: 33 IAPQAIKHSEILEGDGG-PGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSYTLIEGDAL 91
>pdb|1VJH|A Chain A, Crystal Structure Of Gene Product Of At1g24000 From
Arabidopsis Thaliana
pdb|1VJH|B Chain B, Crystal Structure Of Gene Product Of At1g24000 From
Arabidopsis Thaliana
pdb|2Q3Q|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
At1g24000 From Arabidopsis Thaliana
pdb|2Q3Q|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
At1g24000 From Arabidopsis Thaliana
Length = 122
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 97 YKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQMVIDVAKDIDAHLLS 153
+K+ ++ VTP DGS V W F +EK+++D+ DP + + K +D +L+
Sbjct: 63 FKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSIIDESVKYFKKLDEAILN 119
>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1
A F30v Mutant In Complex With Deoxycholate
Length = 159
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 17 PAAKFHQVFSCKP-HVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSP-QIAKEIM 74
PAA+ + F ++ ++PQ+I + +EG G PG I F +G P + K+ +
Sbjct: 14 PAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGG-PGTIKKIS-FPEGFPFKYVKDRV 71
Query: 75 EVIDNENYITNYKVIEG 91
+ +D+ N+ NY VIEG
Sbjct: 72 DEVDHTNFKYNYSVIEG 88
>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1
Length = 159
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 17 PAAKFHQVFSCKP-HVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSP-QIAKEIM 74
PAA+ + F ++ ++PQ+I + +EG G PG I F +G P + K+ +
Sbjct: 14 PAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGG-PGTIKKIS-FPEGFPFKYVKDRV 71
Query: 75 EVIDNENYITNYKVIEG 91
+ +D+ N+ NY VIEG
Sbjct: 72 DEVDHTNFKYNYSVIEG 88
>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|D Chain D, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|G Chain G, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|J Chain J, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1BV1|A Chain A, Birch Pollen Allergen Bet V 1
pdb|1BTV|A Chain A, Structure Of Bet V 1, Nmr, 20 Structures
Length = 159
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 17 PAAKFHQVFSCKP-HVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSP-QIAKEIM 74
PAA+ + F ++ ++PQ+I + +EG G PG I F +G P + K+ +
Sbjct: 14 PAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGG-PGTIKKIS-FPEGLPFKYVKDRV 71
Query: 75 EVIDNENYITNYKVIEG 91
+ +D+ N+ NY VIEG
Sbjct: 72 DEVDHTNFKYNYSVIEG 88
>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1
A In Complex With 8-Anilinonaphthalene-1-Sulfonate
(Ans)
pdb|4A81|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1
A In Ternary Complex With
8-Anilinonaphthalene-1-Sulfonate ( Ans) And Deoxycholic
Acid
pdb|4A83|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1
A In Complex With Deoxycholate.
pdb|4A85|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1
A In Complex With Kinetin.
pdb|4A86|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1
A In Ternary Complex With Kinetin And
8-Anilinonaphthalene-1- Sulfonate (Ans)
pdb|4A87|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1
A In Complex With Naringenin.
pdb|4A88|A Chain A, Crystal Structure Of Native Major Birch Pollen Allergen
Bet V 1 Isoform A
pdb|4A8G|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1
A In Complex With Dimethylbenzylammonium Propane
Sulfonate
Length = 159
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 17 PAAKFHQVFSCKP-HVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSP-QIAKEIM 74
PAA+ + F ++ ++PQ+I + +EG G PG I F +G P + K+ +
Sbjct: 14 PAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGG-PGTIKKIS-FPEGFPFKYVKDRV 71
Query: 75 EVIDNENYITNYKVIEG 91
+ +D+ N+ NY VIEG
Sbjct: 72 DEVDHTNFKYNYSVIEG 88
>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l
Length = 159
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 17 PAAKFHQVFSCKP-HVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSP-QIAKEIM 74
PAA+ + F + ++PQ+I + +EG G PG I F +G P + K+ +
Sbjct: 14 PAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGG-PGTIKKIN-FPEGFPFKYVKDRV 71
Query: 75 EVIDNENYITNYKVIEG 91
+ +D+ N+ NY VIEG
Sbjct: 72 DEVDHTNFKYNYSVIEG 88
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 35 MSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKVIEGNLL 94
++PQ+I+ ++L G+ G PG I + K ++ ID ENY +Y +IEG+ L
Sbjct: 33 IAPQAIKHSEILWGDGG-PGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSYTLIEGDAL 91
>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e
Length = 170
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 17 PAAKFHQVFSCKP-HVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIME 75
PA K + F ++ ++PQ+++ ++LEG+ G PG I + K +
Sbjct: 15 PAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGG-PGTIKKITFGEGSHYGYVKHKIH 73
Query: 76 VIDNENYITNYKVIEGNLL 94
ID N+ +Y +IEG+ L
Sbjct: 74 SIDKVNHTYSYSLIEGDAL 92
>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s,
P108g
Length = 159
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 12/81 (14%)
Query: 17 PAAKFHQVF-----SCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSP-QIA 70
PAA+ + F + P VA PQ+I + + G G PG I F +G P +
Sbjct: 14 PAARLFKAFILDGDTLFPQVA----PQAISSVENISGNGG-PGTIKKIS-FPEGLPFKYV 67
Query: 71 KEIMEVIDNENYITNYKVIEG 91
K+ ++ +D+ N+ NY VIEG
Sbjct: 68 KDRVDEVDHTNFKYNYSVIEG 88
>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s
Length = 159
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 17 PAAKFHQVFSCKP-HVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSP-QIAKEIM 74
PAA+ + F ++ ++PQ+I + + G G PG I F +G P + K+ +
Sbjct: 14 PAARLFKAFILDGDNLFPKVAPQAISSVENISGNGG-PGTIKKIS-FPEGLPFKYVKDRV 71
Query: 75 EVIDNENYITNYKVIEG 91
+ +D+ N+ NY VIEG
Sbjct: 72 DEVDHTNFKYNYSVIEG 88
>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1a From Yellow Lupine
Length = 155
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 38 QSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKVIEGNLLE 95
+ IQ +++EG G PG I HDG ++ ID N NY +I G L+
Sbjct: 35 EPIQSVEIVEGNGG-PGTIKKIIAIHDGHTSFVLHKLDAIDEANLTYNYSIIGGEGLD 91
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V
1 Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1
Isoform J In Complex With
8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 17 PAAKFHQVFSCKP-HVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSP-QIAKEIM 74
PAA+ + F ++ ++PQ+I + +EG G PG I F +G P + K+ +
Sbjct: 14 PAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGG-PGTIKKIS-FPEGFPFKYVKDRV 71
Query: 75 EVIDNENYITNYKVIEG 91
+ +D+ N+ +Y VIEG
Sbjct: 72 DEVDHTNFKYSYSVIEG 88
>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With Cytokinin
pdb|3E85|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With
Diphenylurea
Length = 158
Score = 33.1 bits (74), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 19 AKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVID 78
AK ++ + + ++IQ +++EG G PG I + G + +E ID
Sbjct: 17 AKLYKALVTDADIIIPKAVETIQSVEIVEGNGG-PGTIKKLTFIEGGESKYVLHKIEAID 75
Query: 79 NENYITNYKVIEG 91
N NY ++ G
Sbjct: 76 EANLGYNYSIVGG 88
>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|3C0V|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
Length = 155
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 31 VAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKVIE 90
V + P ++ L+EG+ G G I+ + + + SP +E + D ++ +VIE
Sbjct: 29 VVPKVLPHIVKDVQLIEGDGG-VGTILIFNFLPEVSPSYQREEITEFDESSHEIGLQVIE 87
Query: 91 GNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPD---PTGKLQMVIDVAKDI 147
G L S+ T + +D +LV+ Y+ + D+ + PT Q + + +
Sbjct: 88 GGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDH-DSDIEEKVTPTKTSQSTLMYLRRL 146
Query: 148 DAHL 151
+ +L
Sbjct: 147 ERYL 150
>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4
Length = 157
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 39 SIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKVIEGNLLELYK 98
S + + +EG G PG I + DG + +E ID N +Y V+ G L
Sbjct: 36 SFKSVENVEGNGG-PGTIKKITFLEDGETKFVLHKIESIDEANLGYSYSVVGGAALPDTA 94
Query: 99 ---SFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPD----PTGKLQMVIDVAKDIDAHL 151
+F S + P + GS +YE + P+ TGK + + K I+A+L
Sbjct: 95 EKITFDSKLVAGP---NGGSAGKLTVKYETKGDAEPNQDELKTGKAKADA-LFKAIEAYL 150
Query: 152 LSQ 154
L+
Sbjct: 151 LAH 153
>pdb|3RWS|A Chain A, Crystal Structure Of Medicago Truncatula Nodulin 13
(Mtn13) In Complex With Trans-Zeatin
Length = 168
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 37 PQSIQGCDLLEGEWGKPGCIICWRYFHD-GSPQIAKEIMEVIDNENYITNYKVIEGNLL 94
P+ I+ + LEG+ G PG I + D GS K+ ++++D EN Y V EG L
Sbjct: 41 PRFIEKAETLEGDGG-PGTIKKLTFVGDFGS---TKQHIDMVDRENCAYTYSVYEGIAL 95
>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
pdb|1IFV|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
Length = 155
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 38 QSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKVIEGNLLE 95
+ IQ +++EG G PG + H G ++ ID ++ NY ++ G L+
Sbjct: 35 EQIQSVEIVEGNGG-PGTVKKITASHGGHTSYVLHKIDAIDEASFEYNYSIVGGTGLD 91
>pdb|2VNE|A Chain A, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VNE|B Chain B, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VQ5|A Chain A, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
pdb|2VQ5|B Chain B, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
Length = 201
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 44 DLLEGEW--------GKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKVIEGNLLE 95
DLL G + G G I+ + P KE ++DNE+ + + IEG L+
Sbjct: 59 DLLPGAFEKLEIIGDGGVGTILDXTFVPGEFPHEYKEKFILVDNEHRLKKVQXIEGGYLD 118
Query: 96 L-YKSFCSTVKVTPKEND 112
L + T+ V P D
Sbjct: 119 LGVTYYXDTIHVVPTGKD 136
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 14/55 (25%)
Query: 53 PGCIICWRYFHDGS--------------PQIAKEIMEVIDNENYITNYKVIEGNL 93
PGC++ W++ DG+ Q A E+ EV+ N+ Y ++ +G L
Sbjct: 299 PGCVLRWQFMSDGADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTL 353
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 14/55 (25%)
Query: 53 PGCIICWRYFHDGS--------------PQIAKEIMEVIDNENYITNYKVIEGNL 93
PGC++ W++ DG+ Q A E+ EV+ N+ Y ++ +G L
Sbjct: 299 PGCVLRWQFMSDGADVGFGIFLKKKMGERQRAGEMTEVLPNQRYNSHLVPEDGTL 353
>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
pdb|1XDF|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
Length = 157
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 38 QSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKVIEG 91
++IQ + +EG G PG I G + +E +D N NY ++ G
Sbjct: 35 EAIQSIETVEGNGG-PGTIKKLTLIEGGETKYVLHKIEAVDEANLRYNYSIVGG 87
>pdb|3EYJ|A Chain A, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYK|A Chain A, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
Length = 323
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 3 QNGNKVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSI---QGCDLLEGEWGKPGC 55
+NG V+T+ + ++ K SP + Q CDL+ G G PGC
Sbjct: 13 ENGTSVKTLTDNHVEVVSAKELVETKHTDELCPSPLKLVDGQDCDLINGALGSPGC 68
>pdb|3EXM|A Chain A, Crystal Structure Of The Phosphatase Sc4828 With The
Non-Hydrolyzable Nucleotide Gpcp
Length = 237
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 48 GEWGKPGCIICWRYFHDGSP--QIAKEIMEVIDNENYITNY 86
G W PG I WRY +G P IA+ + V D+ + + +
Sbjct: 24 GHWA-PGSHILWRYRENGGPHVHIARPVTVVRDDADLLAVW 63
>pdb|3CBT|A Chain A, Crystal Structure Of Sc4828, A Unique Phosphatase From
Streptomyces Coelicolor
Length = 237
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 48 GEWGKPGCIICWRYFHDGSP--QIAKEIMEVIDNENYITNY 86
G W PG I WRY +G P IA+ + V D+ + + +
Sbjct: 24 GHWA-PGSHILWRYRENGGPHVHIARPVTVVRDDADLLAVW 63
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 14/55 (25%)
Query: 53 PGCIICWRYFHDGS--------------PQIAKEIMEVIDNENYITNYKVIEGNL 93
PGC++ W++ DG+ Q A E EV+ N+ Y ++ +G L
Sbjct: 299 PGCVLRWQFXSDGADVGFGIFLKTKXGERQRAGEXTEVLPNQRYNSHLVPEDGTL 353
>pdb|3KLX|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl3
pdb|3KLX|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl3
pdb|4DS8|A Chain A, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 209
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 72 EIMEVIDNENYITNYKVIEG-NLLELYKSFCSTVKVTPKENDDGSLVHWI 120
EI+EV+D E I +++V+ G + L Y+S S + E D V+ +
Sbjct: 118 EILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSV 167
>pdb|4DSC|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of H32 At 1.95a
pdb|4DSC|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of H32 At 1.95a
Length = 188
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 72 EIMEVIDNENYITNYKVIEG-NLLELYKSFCSTVKVTPKENDDGSLVHWI 120
EI+EV+D E I +++V+ G + L Y+S S + E D V+ +
Sbjct: 97 EILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSV 146
>pdb|3OJI|A Chain A, X-Ray Crystal Structure Of The Py13 -Pyrabactin Complex
pdb|3OJI|B Chain B, X-Ray Crystal Structure Of The Py13 -Pyrabactin Complex
Length = 189
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 72 EIMEVIDNENYITNYKVIEG-NLLELYKSFCSTVKVTPKENDDGSLVHWI 120
EI+EV+D E I +++V+ G + L Y+S S + E D V+ +
Sbjct: 98 EILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSV 147
>pdb|4DSB|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of I 212121 At 2.70a
pdb|4DSB|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of I 212121 At 2.70a
Length = 186
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 72 EIMEVIDNENYITNYKVIEG-NLLELYKSFCSTVKVTPKENDDGSLVHWI 120
EI+EV+D E I +++V+ G + L Y+S S + E D V+ +
Sbjct: 95 EILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSV 144
>pdb|3BTS|A Chain A, Crystal Structure Of A Ternary Complex Of The
Transcriptional Repressor Gal80p (Gal80s0 [g301r]) And
The Acidic Activation Domain Of Gal4p (Aa 854-874) From
Saccharomyces Cerevisiae With Nad
pdb|3BTS|B Chain B, Crystal Structure Of A Ternary Complex Of The
Transcriptional Repressor Gal80p (Gal80s0 [g301r]) And
The Acidic Activation Domain Of Gal4p (Aa 854-874) From
Saccharomyces Cerevisiae With Nad
pdb|3BTV|A Chain A, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S0)-[g301r]
pdb|3BTV|B Chain B, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S0)-[g301r]
Length = 438
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 70 AKEIMEVIDNENYITNYKVIEGNLLELYKSFC 101
KEIMEV ++ NY I GN+ LY+S
Sbjct: 349 GKEIMEVY----HLRNYNAIVGNIHRLYQSIS 376
>pdb|3V2U|A Chain A, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|B Chain B, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 438
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 70 AKEIMEVIDNENYITNYKVIEGNLLELYKSFC 101
KEIMEV ++ NY I GN+ LY+S
Sbjct: 349 GKEIMEVY----HLRNYNAIVGNIHRLYQSIS 376
>pdb|2PPV|A Chain A, Crystal Structure Of A Protein Belonging To The Upf0052
(Se_0549) From Staphylococcus Epidermidis Atcc 12228 At
2.00 A Resolution
Length = 332
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 77 IDNENYIT-NYKVIEGNLLELYKSFCSTVKVTPKE 110
I NE+Y+ N KV+ + EL ST++ TP +
Sbjct: 295 ISNEHYVRHNTKVLSKXIYELALELTSTIRFTPSD 329
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 26.2 bits (56), Expect = 7.2, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 66 SPQIAKEIMEVIDNENYITNYKVIEGNLLELYKSFCSTVKVTPKENDDGS 115
S ++ K + I+N+++ + + +ELY++F ST DDGS
Sbjct: 341 SVKLTKSVATAIENKDFDKAISLRDTEFIELYENFLSTTV-----KDDGS 385
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,020,286
Number of Sequences: 62578
Number of extensions: 210229
Number of successful extensions: 575
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 35
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)