Query 041437
Match_columns 156
No_of_seqs 112 out of 1048
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:03:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 1.5E-40 3.2E-45 244.2 17.5 150 4-154 2-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 2.8E-36 6.1E-41 220.7 19.8 144 6-153 1-147 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 7.6E-18 1.6E-22 119.3 16.3 135 7-151 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 1.8E-14 4E-19 101.8 19.4 107 6-125 2-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.7 3.1E-15 6.6E-20 107.4 15.0 136 8-152 1-143 (144)
6 cd07819 SRPBCC_2 Ligand-bindin 99.6 3.8E-13 8.2E-18 95.4 16.3 114 6-128 2-115 (140)
7 cd08861 OtcD1_ARO-CYC_like N-t 99.6 2.4E-13 5.2E-18 97.3 15.3 135 8-151 1-140 (142)
8 cd08865 SRPBCC_10 Ligand-bindi 99.6 3.3E-13 7E-18 95.2 15.4 108 8-125 1-108 (140)
9 cd07813 COQ10p_like Coenzyme Q 99.6 1E-13 2.2E-18 99.2 12.0 133 9-152 2-136 (138)
10 cd08862 SRPBCC_Smu440-like Lig 99.5 1E-11 2.2E-16 88.0 15.5 107 7-126 2-108 (138)
11 cd07812 SRPBCC START/RHO_alpha 99.4 9.5E-12 2.1E-16 85.8 14.5 113 9-129 2-114 (141)
12 cd07822 SRPBCC_4 Ligand-bindin 99.4 2.4E-11 5.2E-16 85.8 16.6 110 8-126 2-112 (141)
13 cd07825 SRPBCC_7 Ligand-bindin 99.4 3.9E-11 8.5E-16 85.9 15.5 138 8-151 2-143 (144)
14 cd07817 SRPBCC_8 Ligand-bindin 99.4 3.9E-11 8.5E-16 85.0 13.4 107 8-128 2-108 (139)
15 cd08860 TcmN_ARO-CYC_like N-te 99.4 9.7E-11 2.1E-15 85.5 15.7 114 7-129 2-116 (146)
16 cd05018 CoxG Carbon monoxide d 99.3 8.3E-11 1.8E-15 83.7 13.9 112 7-128 2-115 (144)
17 cd07820 SRPBCC_3 Ligand-bindin 99.3 5.9E-11 1.3E-15 85.0 13.2 110 8-126 1-112 (137)
18 cd07814 SRPBCC_CalC_Aha1-like 99.3 4.1E-11 9E-16 84.8 11.3 135 8-151 2-137 (139)
19 PRK10724 hypothetical protein; 99.3 8.1E-11 1.8E-15 87.0 12.6 133 7-150 16-150 (158)
20 cd07818 SRPBCC_1 Ligand-bindin 99.3 2.3E-10 4.9E-15 82.5 14.0 114 6-128 2-119 (150)
21 cd07824 SRPBCC_6 Ligand-bindin 99.3 3.7E-10 8.1E-15 81.7 15.1 110 7-127 2-113 (146)
22 PF03364 Polyketide_cyc: Polyk 99.2 1.9E-10 4E-15 81.1 10.7 104 14-128 1-106 (130)
23 cd07823 SRPBCC_5 Ligand-bindin 99.1 5.7E-09 1.2E-13 75.4 14.0 112 9-128 2-116 (146)
24 COG5637 Predicted integral mem 99.0 4.8E-09 1E-13 78.2 10.7 114 2-129 66-180 (217)
25 cd08899 SRPBCC_CalC_Aha1-like_ 98.8 1.4E-07 3E-12 69.2 12.4 130 6-156 11-140 (157)
26 cd08898 SRPBCC_CalC_Aha1-like_ 98.8 2.1E-07 4.5E-12 66.3 11.9 135 7-152 2-144 (145)
27 COG3427 Carbon monoxide dehydr 98.7 3.4E-07 7.3E-12 66.6 12.0 136 7-152 2-144 (146)
28 cd07826 SRPBCC_CalC_Aha1-like_ 98.7 3.7E-07 7.9E-12 65.8 11.9 139 8-153 2-142 (142)
29 cd08893 SRPBCC_CalC_Aha1-like_ 98.7 3.8E-07 8.2E-12 64.2 11.7 133 7-152 1-135 (136)
30 cd08900 SRPBCC_CalC_Aha1-like_ 98.7 3.3E-06 7.1E-11 60.7 16.0 137 8-152 2-142 (143)
31 cd08897 SRPBCC_CalC_Aha1-like_ 98.7 1.6E-06 3.5E-11 61.6 13.7 128 7-152 1-132 (133)
32 cd08894 SRPBCC_CalC_Aha1-like_ 98.6 8.5E-07 1.8E-11 63.5 11.3 134 8-152 2-138 (139)
33 cd08895 SRPBCC_CalC_Aha1-like_ 98.6 6.7E-06 1.4E-10 59.3 15.4 136 7-152 1-145 (146)
34 PF06240 COXG: Carbon monoxide 98.6 4.2E-06 9E-11 60.3 13.9 108 11-128 2-111 (140)
35 cd08896 SRPBCC_CalC_Aha1-like_ 98.5 1.9E-06 4.2E-11 62.2 11.4 137 8-153 2-146 (146)
36 COG2867 Oligoketide cyclase/li 98.5 8.8E-07 1.9E-11 64.1 8.2 113 6-128 2-114 (146)
37 cd08876 START_1 Uncharacterize 98.4 2.8E-05 6.1E-10 58.6 15.8 141 6-151 41-194 (195)
38 cd08891 SRPBCC_CalC Ligand-bin 98.3 3.5E-05 7.6E-10 55.7 13.7 132 8-152 2-148 (149)
39 COG3832 Uncharacterized conser 98.3 5.4E-05 1.2E-09 55.3 13.2 139 3-152 5-148 (149)
40 cd08901 SRPBCC_CalC_Aha1-like_ 98.2 3.6E-05 7.7E-10 54.9 10.7 125 8-153 2-132 (136)
41 PF08327 AHSA1: Activator of H 98.2 3.2E-05 7E-10 53.4 10.0 122 15-151 1-123 (124)
42 cd08892 SRPBCC_Aha1 Putative h 98.2 0.00013 2.9E-09 51.4 13.1 122 8-151 2-124 (126)
43 PTZ00220 Activator of HSP-90 A 97.8 0.00048 1E-08 49.2 10.6 122 14-152 1-127 (132)
44 cd08874 START_STARD9-like C-te 97.6 0.0065 1.4E-07 46.8 15.1 122 7-132 46-182 (205)
45 cd08873 START_STARD14_15-like 97.6 0.014 3.1E-07 45.8 16.4 144 7-154 78-235 (235)
46 cd08863 SRPBCC_DUF1857 DUF1857 97.4 0.019 4.2E-07 41.7 14.2 96 17-132 18-114 (141)
47 cd08906 START_STARD3-like Chol 97.1 0.053 1.1E-06 41.7 14.9 143 6-152 49-207 (209)
48 PF08982 DUF1857: Domain of un 97.0 0.044 9.5E-07 40.2 13.1 99 8-126 2-108 (149)
49 cd08905 START_STARD1-like Chol 97.0 0.035 7.6E-07 42.6 13.3 144 6-152 49-207 (209)
50 cd08868 START_STARD1_3_like Ch 97.0 0.11 2.3E-06 39.7 16.2 145 7-153 49-207 (208)
51 cd08913 START_STARD14-like Lip 96.9 0.12 2.5E-06 40.8 15.0 115 7-125 82-209 (240)
52 cd08914 START_STARD15-like Lip 96.8 0.095 2.1E-06 41.2 14.1 140 6-152 78-234 (236)
53 COG4276 Uncharacterized conser 96.5 0.19 4.1E-06 36.3 15.2 138 6-151 2-146 (153)
54 cd08877 START_2 Uncharacterize 96.3 0.26 5.6E-06 37.8 13.6 140 6-152 46-213 (215)
55 cd00177 START Lipid-binding ST 96.0 0.38 8.2E-06 35.2 15.1 119 6-128 39-167 (193)
56 cd08870 START_STARD2_7-like Li 96.0 0.5 1.1E-05 36.1 14.2 141 7-152 51-207 (209)
57 cd08903 START_STARD5-like Lipi 95.9 0.58 1.3E-05 35.8 15.1 140 8-152 48-206 (208)
58 cd08871 START_STARD10-like Lip 95.7 0.68 1.5E-05 35.6 15.6 117 8-128 49-175 (222)
59 cd08911 START_STARD7-like Lipi 95.7 0.7 1.5E-05 35.3 14.4 142 7-152 46-205 (207)
60 PF10698 DUF2505: Protein of u 95.2 0.85 1.8E-05 33.4 14.0 112 8-129 1-131 (159)
61 cd08872 START_STARD11-like Cer 94.0 2.3 4.9E-05 33.4 12.2 142 7-154 53-227 (235)
62 cd08867 START_STARD4_5_6-like 93.5 2.5 5.5E-05 32.0 15.5 141 7-151 47-205 (206)
63 smart00234 START in StAR and p 93.5 2.4 5.2E-05 31.7 16.7 143 6-153 45-202 (206)
64 cd08910 START_STARD2-like Lipi 91.5 5 0.00011 30.6 13.3 137 7-151 50-204 (207)
65 cd08869 START_RhoGAP C-termina 90.5 6.2 0.00013 29.8 16.3 116 7-128 45-170 (197)
66 PF01852 START: START domain; 83.2 16 0.00036 27.0 15.6 142 6-154 46-203 (206)
67 KOG3177 Oligoketide cyclase/li 82.3 9.7 0.00021 29.5 7.4 108 12-128 74-183 (227)
68 cd08908 START_STARD12-like C-t 72.4 42 0.0009 25.8 12.8 117 6-128 52-177 (204)
69 cd08904 START_STARD6-like Lipi 69.5 48 0.001 25.4 14.1 118 7-128 47-178 (204)
70 cd08902 START_STARD4-like Lipi 66.4 58 0.0013 25.1 12.0 118 8-128 49-176 (202)
71 PF11485 DUF3211: Protein of u 65.4 49 0.0011 23.9 11.4 99 7-124 2-101 (136)
72 PF11687 DUF3284: Domain of un 48.8 88 0.0019 21.7 10.5 101 10-127 3-104 (120)
73 TIGR02777 LigD_PE_dom DNA liga 38.1 43 0.00094 24.7 3.2 59 54-127 50-110 (156)
74 cd08885 RHO_alpha_C_1 C-termin 32.1 2E+02 0.0043 20.9 6.3 44 81-125 81-124 (190)
75 cd08864 SRPBCC_DUF3074 DUF3074 27.7 2.8E+02 0.0061 21.2 12.4 104 21-126 53-177 (208)
76 COG5569 Uncharacterized conser 26.7 46 0.001 22.7 1.6 43 52-95 40-82 (108)
77 PF11979 DUF3480: Domain of un 25.6 3.2E+02 0.0069 23.0 6.6 63 88-152 238-308 (356)
78 PF08868 YugN: YugN-like famil 25.6 69 0.0015 23.0 2.4 29 124-152 104-132 (132)
79 cd00222 CollagenBindB Collagen 24.0 1.9E+02 0.0042 21.9 4.7 73 14-94 3-75 (187)
80 KOG1538 Uncharacterized conser 22.7 1.7E+02 0.0037 27.1 4.7 64 55-125 14-86 (1081)
81 PF02922 CBM_48: Carbohydrate- 21.9 2.1E+02 0.0045 17.7 6.3 58 31-92 14-74 (85)
82 PF10651 DUF2479: Domain of un 20.6 3.4E+02 0.0075 19.7 8.2 59 68-128 68-126 (170)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=1.5e-40 Score=244.24 Aligned_cols=150 Identities=39% Similarity=0.644 Sum_probs=137.5
Q ss_pred CCeEEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccE
Q 041437 4 NGNKVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYI 83 (156)
Q Consensus 4 ~~~~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~ 83 (156)
+.++++.++++++||+|+|+++++..+.+|+++|++|++|+++|||||..||||.|+|.++++...+|||++.+|+++++
T Consensus 2 ~~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~ 81 (151)
T PF00407_consen 2 GVGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKT 81 (151)
T ss_dssp CEEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTE
T ss_pred CcEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCcE
Confidence 35899999999999999999999534479999999999999999995444599999999999989999999999999999
Q ss_pred EEEEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCchhHHHHHHHHHHHHHHHHhcC
Q 041437 84 TNYKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQMVIDVAKDIDAHLLSQ 154 (156)
Q Consensus 84 ~~y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~ 154 (156)
++|+++||+++..|++|..++++.|.++| +|+++|+++|++.++..++|+++++++..|+|+||+||++|
T Consensus 82 ~~y~viEGd~l~~~~~~~~~~~~~~~~~g-~~v~k~t~~Ye~~~~~~~~p~~~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 82 ITYTVIEGDVLGDYKSFKSTIQKIPKGDG-GCVVKWTIEYEKKGEDVPPPEKYLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp EEEEEEEETTGTTTEEEEEEEEEEEETTS-CEEEEEEEEEEESSTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeccccccEEEEEEEEEecCCCCC-ceEEEEEEEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999988899999999999998887 89999999999999988889999999999999999999987
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=2.8e-36 Score=220.70 Aligned_cols=144 Identities=32% Similarity=0.502 Sum_probs=132.3
Q ss_pred eEEEEEEEeCCCHHHHHHHHhcCCC-cc-cccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccE
Q 041437 6 NKVETVVEVKAPAAKFHQVFSCKPH-VA-ASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYI 83 (156)
Q Consensus 6 ~~v~~~~~i~apadkvW~~~~~d~~-~~-p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~ 83 (156)
++++.+++|+||||+||++++ +|. .+ +.|+| +|++|++++|+ +++||||.|+|.++++..+++|||+.+|+++|+
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~-~~~~~~~~~~~p-~v~~~~~~eG~-~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~ 77 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFV-LDSHLLPPKLPP-VIKSVELLEGD-GGPGSIKLITFGPGGKVKYVKERIDAVDEENKT 77 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHh-cChhhccccccc-cccEEEEEecC-CCCceEEEEEEcCCCcceEEEEEEEEEcccccE
Confidence 478999999999999999999 787 45 56677 79999999998 799999999999777778999999999999999
Q ss_pred EEEEEEeccccC-CeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCchhHHHHHHHHHHHHHHHHhc
Q 041437 84 TNYKVIEGNLLE-LYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQMVIDVAKDIDAHLLS 153 (156)
Q Consensus 84 ~~y~iieg~~~~-~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~ 153 (156)
++|++++|+++. +|++|.++++|.|.+++ +|+++|+++|++.++.+++|+++++.+..+++.+++|++.
T Consensus 78 ~~y~vveg~~~~~~~~~y~~t~~v~~~~~~-~t~v~Wt~~ye~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd07816 78 YKYTVIEGDVLKDGYKSYKVEIKFVPKGDG-GCVVKWTIEYEKKGDAEPPEEEIKAGKEKALKMFKAVEAY 147 (148)
T ss_pred EEEEEEecccccCceEEEEEEEEEEECCCC-CEEEEEEEEEEECCCCCCCHHHHHhHHHHHHHHHHHHHhc
Confidence 999999999864 79999999999999766 9999999999999998899999999999999999999875
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.80 E-value=7.6e-18 Score=119.26 Aligned_cols=135 Identities=24% Similarity=0.367 Sum_probs=110.9
Q ss_pred EEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEE
Q 041437 7 KVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNY 86 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y 86 (156)
.++.+++|++|+++||+++. |++.+++|+|. +.++++.++.. ++|+++.+.+.. | ..+++++..+|+.+++++|
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~-d~~~~~~w~~~-~~~~~~~~~~~-~~g~~~~~~~~~-g--~~~~~~i~~~~~~~~~i~~ 75 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLS-DFGGLHKWHPA-VASCELEGGGP-GVGAVRTVTLKD-G--GTVRERLLALDDAERRYSY 75 (140)
T ss_pred cEEEEEEECCCHHHHHHHHh-CcCchhhhccC-cceEEeecCCC-CCCeEEEEEeCC-C--CEEEEEehhcCccCCEEEE
Confidence 57889999999999999999 99999999996 88989877653 689999999873 3 4789999999888789999
Q ss_pred EEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCch---hHHHHHHHHHHHHHHHH
Q 041437 87 KVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPT---GKLQMVIDVAKDIDAHL 151 (156)
Q Consensus 87 ~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~~---~~~~~~~~~~k~ie~~l 151 (156)
++.+|+. ++.++.+++++.|.++| +|.|.|+.+|++... .+.+. ...+.....++.|++++
T Consensus 76 ~~~~~~~--~~~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 76 RIVEGPL--PVKNYVATIRVTPEGDG-GTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EecCCCC--CcccceEEEEEEECCCC-ccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998854 67788999999998876 899999999999876 22221 22355667777887775
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.69 E-value=1.8e-14 Score=101.83 Aligned_cols=107 Identities=24% Similarity=0.374 Sum_probs=89.3
Q ss_pred eEEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEE
Q 041437 6 NKVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITN 85 (156)
Q Consensus 6 ~~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~ 85 (156)
.+++.++.|++|+++||++++ |+.++++|.|+ +.++++++++ ++|..+.+... |. ..+++++..+|++++.+.
T Consensus 2 ~~~~~~~~v~a~~e~V~~~l~-d~~~~~~w~~~-~~~~~~~~~~--~~~~~~~~~~~--g~-~~~~~~i~~~~~~~~~~~ 74 (139)
T PF10604_consen 2 FKVEVSIEVPAPPEAVWDLLS-DPENWPRWWPG-VKSVELLSGG--GPGTERTVRVA--GR-GTVREEITEYDPEPRRIT 74 (139)
T ss_dssp EEEEEEEEESS-HHHHHHHHT-TTTGGGGTSTT-EEEEEEEEEC--STEEEEEEEEC--SC-SEEEEEEEEEETTTTEEE
T ss_pred EEEEEEEEECCCHHHHHHHHh-Chhhhhhhhhc-eEEEEEcccc--ccceeEEEEec--cc-cceeEEEEEecCCCcEEE
Confidence 478999999999999999999 99999999996 8899987633 45666666653 33 479999999998899999
Q ss_pred EEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEE
Q 041437 86 YKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEK 125 (156)
Q Consensus 86 y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~ 125 (156)
|++. .. +...+.+++++.|.++ ||.|.|+.+|++
T Consensus 75 ~~~~--~~--~~~~~~~~~~~~~~~~--gt~v~~~~~~~~ 108 (139)
T PF10604_consen 75 WRFV--PS--GFTNGTGRWRFEPVGD--GTRVTWTVEFEP 108 (139)
T ss_dssp EEEE--SS--SSCEEEEEEEEEEETT--TEEEEEEEEEEE
T ss_pred EEEE--ec--ceeEEEEEEEEEEcCC--CEEEEEEEEEEE
Confidence 9996 22 5678899999999874 699999999998
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.68 E-value=3.1e-15 Score=107.38 Aligned_cols=136 Identities=17% Similarity=0.126 Sum_probs=95.2
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEec----CCCcceEEEEEEEeeCCccE
Q 041437 8 VETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFH----DGSPQIAKEIMEVIDNENYI 83 (156)
Q Consensus 8 v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~----~g~~~~~kErl~~~D~~~~~ 83 (156)
|..++.|++|+++||+++. |++++|+|+|+ +++++++++. +.+......... ..-...+..++.+.++.++.
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~-D~~~~~~w~p~-v~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 76 (144)
T cd08866 1 VVARVRVPAPPETVWAVLT-DYDNLAEFIPN-LAESRLLERN--GNRVVLEQTGKQGILFFKFEARVVLELREREEFPRE 76 (144)
T ss_pred CeEEEEECCCHHHHHHHHh-ChhhHHhhCcC-ceEEEEEEcC--CCEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCce
Confidence 4578999999999999999 99999999996 8899988764 222211111000 00012445556666666899
Q ss_pred EEEEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCc-hh--HHHHHHHHHHHHHHHHh
Q 041437 84 TNYKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDP-TG--KLQMVIDVAKDIDAHLL 152 (156)
Q Consensus 84 ~~y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~-~~--~~~~~~~~~k~ie~~l~ 152 (156)
+.|++++|++ ..|.+++++.|.++|++|.++|+.+|++... .+.+ .+ ..+.+..++++|.+.+.
T Consensus 77 i~~~~~~g~~----~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~-~p~~l~~~~~~~~~~~~l~~lr~~ae 143 (144)
T cd08866 77 LDFEMVEGDF----KRFEGSWRLEPLADGGGTLLTYEVEVKPDFF-APVFLVEFVLRQDLPTNLLAIRAEAE 143 (144)
T ss_pred EEEEEcCCch----hceEEEEEEEECCCCCeEEEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998864 6889999999998722899999999998764 3221 11 13455677777776653
No 6
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.57 E-value=3.8e-13 Score=95.41 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=82.9
Q ss_pred eEEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEE
Q 041437 6 NKVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITN 85 (156)
Q Consensus 6 ~~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~ 85 (156)
-+++.++.|++|+++||+++. |+.++|+|+|. +.+++.++++.++.+....++....+-.....-++. .++ .+.++
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l~-D~~~~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~ 77 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVLA-DVEAYPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYT-WDG-AGSVS 77 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHHh-ChhhhhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEE-EcC-CCcEE
Confidence 468999999999999999999 99999999996 889998665423333333444432221111222322 223 67899
Q ss_pred EEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCC
Q 041437 86 YKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNE 128 (156)
Q Consensus 86 y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~ 128 (156)
|+..++. +...+.+++++.|.++ ||.|.|+.++++...
T Consensus 78 ~~~~~~~---~~~~~~~~~~~~~~~~--~t~vt~~~~~~~~~~ 115 (140)
T cd07819 78 WTLVEGE---GNRSQEGSYTLTPKGD--GTRVTFDLTVELTVP 115 (140)
T ss_pred EEEeccc---ceeEEEEEEEEEECCC--CEEEEEEEEEEecCC
Confidence 9999875 4677889999999864 799999999998664
No 7
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.57 E-value=2.4e-13 Score=97.25 Aligned_cols=135 Identities=19% Similarity=0.172 Sum_probs=93.3
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEEE
Q 041437 8 VETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYK 87 (156)
Q Consensus 8 v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y~ 87 (156)
++.+++|++|+++||+++. |+..+|+|+|. .+++.++++ +....++.+....+|....+ +....+|++.+++.|.
T Consensus 1 ~~~s~~i~ap~~~V~~~l~-D~~~~p~~~p~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~ 75 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLA-DAERWPEFLPT--VHVERLELD-GGVERLRMWATAFDGSVHTW-TSRRVLDPEGRRIVFR 75 (142)
T ss_pred CeEEEEEcCCHHHHHHHHH-hHHhhhccCCC--ceEEEEEEc-CCEEEEEEEEEcCCCcEEEE-EEEEEEcCCCCEEEEE
Confidence 4688999999999999999 99999999995 455545543 22224555555433332233 3444678879999999
Q ss_pred EEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCchhH-----HHHHHHHHHHHHHHH
Q 041437 88 VIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK-----LQMVIDVAKDIDAHL 151 (156)
Q Consensus 88 iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~~~~-----~~~~~~~~k~ie~~l 151 (156)
.++++. .+..+.++++|.|.+++ +|.|+|+.+|++.... +-+... ...+..++++|.+++
T Consensus 76 ~~~~~~--~~~~~~g~w~~~~~~~~-~t~Vt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~lk~~~ 140 (142)
T cd08861 76 QEEPPP--PVASMSGEWRFEPLGGG-GTRVTLRHDFTLGIDS-PEAVPWIRRALDRNSRAELAALRAAA 140 (142)
T ss_pred EeeCCC--ChhhheeEEEEEECCCC-cEEEEEEEEEEECCCC-chhHHHHHHHHccccHHHHHHHHHHh
Confidence 998644 46788899999999866 8999999999988542 212211 123445666665554
No 8
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.57 E-value=3.3e-13 Score=95.21 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=86.7
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEEE
Q 041437 8 VETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYK 87 (156)
Q Consensus 8 v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y~ 87 (156)
++.++.|++|+|+||+++. |+..+++|.|. +.+++.+.+...++|+...+....+|....+++++...| +++.+.|.
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~-d~~~~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~-p~~~~~~~ 77 (140)
T cd08865 1 VEESIVIERPVEEVFAYLA-DFENAPEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYE-PGRRVVFR 77 (140)
T ss_pred CceEEEEcCCHHHHHHHHH-CccchhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEec-CCcEEEEE
Confidence 4678999999999999999 99999999996 778887654434678888887654444456789998876 56899999
Q ss_pred EEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEE
Q 041437 88 VIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEK 125 (156)
Q Consensus 88 iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~ 125 (156)
...+++ .+..++++.|.++ +|.++|+.+|+.
T Consensus 78 ~~~~~~-----~~~~~~~~~~~~~--~t~v~~~~~~~~ 108 (140)
T cd08865 78 GSSGPF-----PYEDTYTFEPVGG--GTRVRYTAELEP 108 (140)
T ss_pred ecCCCc-----ceEEEEEEEEcCC--ceEEEEEEEEcc
Confidence 876643 3578999998753 799999999987
No 9
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.55 E-value=1e-13 Score=99.17 Aligned_cols=133 Identities=9% Similarity=0.062 Sum_probs=97.8
Q ss_pred EEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEEEE
Q 041437 9 ETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKV 88 (156)
Q Consensus 9 ~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y~i 88 (156)
+.++.|++|++.||+++. |.+++|+|+|+ +.++++++++ +.+....+.....+....+..++. +++ ++++++..
T Consensus 2 ~~s~~i~ap~~~v~~~i~-D~~~~~~~~p~-~~~~~vl~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~ 75 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVA-DVERYPEFLPW-CTASRVLERD--EDELEAELTVGFGGIRESFTSRVT-LVP-PESIEAEL 75 (138)
T ss_pred eEEEEcCCCHHHHHHHHH-HHHhhhhhcCC-ccccEEEEcC--CCEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEe
Confidence 578999999999999999 99999999996 8899998865 234444555554444445556654 665 77899999
Q ss_pred EeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCch-hH-HHHHHHHHHHHHHHHh
Q 041437 89 IEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPT-GK-LQMVIDVAKDIDAHLL 152 (156)
Q Consensus 89 ieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~~-~~-~~~~~~~~k~ie~~l~ 152 (156)
++|+ ++.+.+++++.|.++| +|.|+|..+|++.++-..... .+ .+....+++++.+.+.
T Consensus 76 ~~g~----~~~~~g~w~~~p~~~~-~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~ 136 (138)
T cd07813 76 VDGP----FKHLEGEWRFKPLGEN-ACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAK 136 (138)
T ss_pred cCCC----hhhceeEEEEEECCCC-CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9884 3677899999999877 899999999999865211111 11 2455567777766553
No 10
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.45 E-value=1e-11 Score=87.96 Aligned_cols=107 Identities=11% Similarity=0.013 Sum_probs=81.2
Q ss_pred EEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEE
Q 041437 7 KVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNY 86 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y 86 (156)
+++.++.|+||+++||+++. |+.++++|+|+ +.++++..+. .++|+...++.. ++ ..+..++.++++ .++++|
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~-d~~~~~~w~~~-~~~~~~~~~~-~~~G~~~~~~~~-~~--~~~~~~i~~~~p-~~~~~~ 74 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLT-DVENWPAWTPS-VETVRLEGPP-PAVGSSFKMKPP-GL--VRSTFTVTELRP-GHSFTW 74 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHH-hhhhcccccCc-ceEEEEecCC-CCCCcEEEEecC-CC--CceEEEEEEecC-CCEEEE
Confidence 57899999999999999999 99999999996 8899876543 266776666543 22 356778888874 456888
Q ss_pred EEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEc
Q 041437 87 KVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKL 126 (156)
Q Consensus 87 ~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~ 126 (156)
+.... ...+..++++.|.+++ +|.+.|+.+|...
T Consensus 75 ~~~~~-----~~~~~~~~~~~~~~~~-~t~l~~~~~~~~~ 108 (138)
T cd08862 75 TGPAP-----GISAVHRHEFEAKPDG-GVRVTTSESLSGP 108 (138)
T ss_pred EecCC-----CEEEEEEEEEEEcCCC-cEEEEEEEEeecc
Confidence 75432 2344578999998755 8999999988754
No 11
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.44 E-value=9.5e-12 Score=85.75 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=89.5
Q ss_pred EEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEEEE
Q 041437 9 ETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKV 88 (156)
Q Consensus 9 ~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y~i 88 (156)
+.++.|++|+++||+++. |+..+++|.|+ +.+++..++.....|....+.+. ++.....+.++..+++ +..++|+.
T Consensus 2 ~~~~~i~a~~~~v~~~l~-d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~-~~~~~~~~ 77 (141)
T cd07812 2 EASIEIPAPPEAVWDLLS-DPERWPEWSPG-LERVEVLGGGEGGVGARFVGGRK-GGRRLTLTSEVTEVDP-PRPGRFRV 77 (141)
T ss_pred cEEEEeCCCHHHHHHHHh-ChhhhhhhCcc-cceEEEcCCCCccceeEEEEEec-CCccccceEEEEEecC-CCceEEEE
Confidence 578899999999999999 99999999997 88888776543456666666654 2333467888877766 77999999
Q ss_pred EeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCC
Q 041437 89 IEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNED 129 (156)
Q Consensus 89 ieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~ 129 (156)
..++.. ..+..++++.+.+++ +|.+.|+.++++....
T Consensus 78 ~~~~~~---~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 78 TGGGGG---VDGTGEWRLEPEGDG-GTRVTYTVEYDPPGPL 114 (141)
T ss_pred ecCCCC---cceeEEEEEEECCCC-cEEEEEEEEEecCCcc
Confidence 987752 577899999998664 8999999999988664
No 12
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.43 E-value=2.4e-11 Score=85.79 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=83.9
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecC-CCcceEEEEEEEeeCCccEEEE
Q 041437 8 VETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHD-GSPQIAKEIMEVIDNENYITNY 86 (156)
Q Consensus 8 v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~-g~~~~~kErl~~~D~~~~~~~y 86 (156)
++.++.|++|+++||+++. |++++++|+|. +..++... .++|+...+.+..+ +....+.+++.++|+ .+++.|
T Consensus 2 v~~~~~i~ap~~~Vw~~~~-d~~~~~~w~~~-~~~~~~~~---~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~ 75 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLT-DFPSYPEWNPF-VRSATGLS---LALGARLRFVVKLPGGPPRSFKPRVTEVEP-PRRLAW 75 (141)
T ss_pred eEEEEEecCCHHHHHHHHh-ccccccccChh-heeEeccc---cCCCCEEEEEEeCCCCCcEEEEEEEEEEcC-CCEeEE
Confidence 6789999999999999999 89999999995 66655321 25677777777543 244567888888865 579999
Q ss_pred EEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEc
Q 041437 87 KVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKL 126 (156)
Q Consensus 87 ~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~ 126 (156)
+...++. ..-....++++.|.+++ +|.+.|+..|...
T Consensus 76 ~~~~~~~--~~~~~~~~~~~~~~~~~-~T~~~~~~~~~g~ 112 (141)
T cd07822 76 RGGLPFP--GLLDGEHSFELEPLGDG-GTRFVHRETFSGL 112 (141)
T ss_pred EecCCCC--cEeeEEEEEEEEEcCCC-cEEEEEeeEEEEE
Confidence 9877754 22345678999998666 8999999888654
No 13
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.39 E-value=3.9e-11 Score=85.91 Aligned_cols=138 Identities=12% Similarity=0.096 Sum_probs=93.4
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCC-CCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEE
Q 041437 8 VETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGE-WGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNY 86 (156)
Q Consensus 8 v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd-~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y 86 (156)
++.++.|+||+++||+++. |+..+|+|.|... ......++ .-++|+...+.....|....+..++..+++ ++.++|
T Consensus 2 i~~~~~i~ap~e~Vw~~l~-d~~~~~~W~~~~~-~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~~~v~~~~p-~~~l~~ 78 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLA-DPRRHPEIDGSGT-VREAIDGPRILAVGDVFRMAMRLDGGPYRITNHVVAFEE-NRLIAW 78 (144)
T ss_pred eEEEEEEeCCHHHHHHHHh-CccccceeCCCCc-cccccCCCccCCCCCEEEEEEEcCCCceEEEEEEEEECC-CCEEEE
Confidence 6789999999999999999 9999999998522 22222332 137888887777643334456677777754 667999
Q ss_pred EEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCC--CC-CchhHHHHHHHHHHHHHHHH
Q 041437 87 KVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNED--VP-DPTGKLQMVIDVAKDIDAHL 151 (156)
Q Consensus 87 ~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~--~~-~~~~~~~~~~~~~k~ie~~l 151 (156)
+..-.+. +......++++.|.++| +|.++++.+|...+.. .. ............+..|++|+
T Consensus 79 ~~~~~~~--~~~~~~~~~~l~~~~~g-~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 79 RPGPAGQ--EPGGHRWRWELEPIGPG-RTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EccCCCC--CCCceeEEEEEEECCCC-cEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 8642111 12234568889898766 8999999998866431 11 11223455667888888876
No 14
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.36 E-value=3.9e-11 Score=85.00 Aligned_cols=107 Identities=15% Similarity=0.167 Sum_probs=80.1
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEEE
Q 041437 8 VETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYK 87 (156)
Q Consensus 8 v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y~ 87 (156)
++.++.|++|+++||+++. |+.++|+|.|+ +.+++.+.|. +....+... +|....+..++... +.++.+.|.
T Consensus 2 v~~~i~I~ap~e~V~~~~~-D~~~~~~w~~~-~~~~~~~~~~----~~~~~~~~~-~g~~~~~~~~v~~~-~~~~~i~~~ 73 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWR-DFENLPRFMSH-VESVEQLDDT----RSHWKAKGP-AGLSVEWDAEITEQ-VPNERIAWR 73 (139)
T ss_pred eeEEEEeCCCHHHHHHHHh-ChhhhHHHhhh-hcEEEEcCCC----ceEEEEecC-CCCcEEEEEEEecc-CCCCEEEEE
Confidence 6789999999999999999 99999999996 8898876442 222223222 25445667776554 456669999
Q ss_pred EEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCC
Q 041437 88 VIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNE 128 (156)
Q Consensus 88 iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~ 128 (156)
...|.+ .+.+++++.|.+++ +|.++++..|++...
T Consensus 74 ~~~~~~-----~~~~~~~f~~~~~~-~T~vt~~~~~~~~~~ 108 (139)
T cd07817 74 SVEGAD-----PNAGSVRFRPAPGR-GTRVTLTIEYEPPGG 108 (139)
T ss_pred ECCCCC-----CcceEEEEEECCCC-CeEEEEEEEEECCcc
Confidence 876542 45688999998765 899999999998754
No 15
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.36 E-value=9.7e-11 Score=85.46 Aligned_cols=114 Identities=11% Similarity=0.129 Sum_probs=83.3
Q ss_pred EEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEE
Q 041437 7 KVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNY 86 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y 86 (156)
..+++++|++||++||+++. |+..+|.|+|. +.++++++.++.+.|..-++.+..+|....+..+. .+|...+++.+
T Consensus 2 ~~~~si~i~a~~~~v~~lva-Dv~~~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~-~~~~~~~~i~~ 78 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTN-DIATWPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSER-TLDPVNRTVRA 78 (146)
T ss_pred cceeEEEEcCCHHHHHHHHH-hhhhhhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEE-EecCCCcEEEE
Confidence 46789999999999999999 99999999996 88999887542344532222232244344443332 37888888887
Q ss_pred E-EEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCC
Q 041437 87 K-VIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNED 129 (156)
Q Consensus 87 ~-iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~ 129 (156)
. ...+ ++.+..++++|.|.++ ||.|++..+|+..++.
T Consensus 79 ~~~~~~----p~~~m~~~W~f~~~~~--gT~V~~~~~~~~~~~~ 116 (146)
T cd08860 79 RRVETG----PFAYMNIRWEYTEVPE--GTRMRWVQDFEMKPGA 116 (146)
T ss_pred EEecCC----CcceeeeeEEEEECCC--CEEEEEEEEEEECCCC
Confidence 5 2222 4788999999999854 6999999999987643
No 16
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.33 E-value=8.3e-11 Score=83.67 Aligned_cols=112 Identities=11% Similarity=0.078 Sum_probs=76.9
Q ss_pred EEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCC--CcceEEEEEEEeeCCccEE
Q 041437 7 KVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDG--SPQIAKEIMEVIDNENYIT 84 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g--~~~~~kErl~~~D~~~~~~ 84 (156)
+++.++.+++|+++||+++. |+.++++|+|+ +++++.++++ .... .+++..++ .....+-++..+|+ ++.+
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~-D~~~~~~w~p~-~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 74 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALN-DPEVLARCIPG-CESLEKIGPN--EYEA--TVKLKVGPVKGTFKGKVELSDLDP-PESY 74 (144)
T ss_pred eeeeEEEecCCHHHHHHHhc-CHHHHHhhccc-hhhccccCCC--eEEE--EEEEEEccEEEEEEEEEEEEecCC-CcEE
Confidence 57889999999999999999 99999999996 7788766532 1111 12222121 11123455555544 4667
Q ss_pred EEEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCC
Q 041437 85 NYKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNE 128 (156)
Q Consensus 85 ~y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~ 128 (156)
.++....+. .....+.+++++.|. ++ ||.++|+.+|++.+.
T Consensus 75 ~~~~~~~~~-~~~~~~~~~~~l~~~-~~-gT~v~~~~~~~~~g~ 115 (144)
T cd05018 75 TITGEGKGG-AGFVKGTARVTLEPD-GG-GTRLTYTADAQVGGK 115 (144)
T ss_pred EEEEEEcCC-CceEEEEEEEEEEec-CC-cEEEEEEEEEEEccC
Confidence 777654322 135688999999998 45 899999999998754
No 17
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.33 E-value=5.9e-11 Score=85.00 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=86.0
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCC--CCCccEEEEEEecCCCcceEEEEEEEeeCCccEEE
Q 041437 8 VETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEW--GKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITN 85 (156)
Q Consensus 8 v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~--~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~ 85 (156)
++.++.|++|+++||+.+. |+.++|+|+|+ +.++++++.+. ..+|+.-.+.+...+....++-++..+ +.++.++
T Consensus 1 ~~~s~~I~ap~e~V~~~~~-d~~~~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~-~p~~~f~ 77 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHS-RPDNLERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEV-EPPRRFV 77 (137)
T ss_pred CeEEEEcCCCHHHHHHHHc-CcchHHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEE-cCCCeEE
Confidence 3678999999999999999 99999999997 77888874321 245788888877655334567777665 4567799
Q ss_pred EEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEc
Q 041437 86 YKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKL 126 (156)
Q Consensus 86 y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~ 126 (156)
+..+.|++ ..+..++.+.|.++ ||.++++++|+..
T Consensus 78 ~~~~~G~~----~~w~h~~~f~~~~~--gT~vt~~v~~~~p 112 (137)
T cd07820 78 DEQVSGPF----RSWRHTHRFEAIGG--GTLMTDRVEYRLP 112 (137)
T ss_pred EEeccCCc----hhCEEEEEEEECCC--ceEEEEEEEEeCC
Confidence 99887754 56778889988753 7999999999974
No 18
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.31 E-value=4.1e-11 Score=84.75 Aligned_cols=135 Identities=10% Similarity=0.014 Sum_probs=90.1
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEEE
Q 041437 8 VETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYK 87 (156)
Q Consensus 8 v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y~ 87 (156)
++.+++|+||+++||+++. |+.++|+|+|+ +..+. ++....|+.+.+....+|....++.++..+| +++.+.|+
T Consensus 2 i~~s~~I~a~~~~Vw~~l~-d~~~~~~w~~~-~~~~~---~~~~~Gg~~~~~~~~~~g~~~~~~~~i~~~~-~~~~i~~~ 75 (139)
T cd07814 2 ITIEREFDAPPELVWRALT-DPELLAQWFGP-TTTAE---MDLRVGGRWFFFMTGPDGEEGWVSGEVLEVE-PPRRLVFT 75 (139)
T ss_pred eEEEEEecCCHHHHHHHcC-CHHHHHhhhCc-CCceE---EcccCCceEEEEEECCCCCEEeccEEEEEEc-CCCeEEEE
Confidence 6789999999999999999 99999999995 32322 2211126666555443333456788888887 45789999
Q ss_pred EEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCC-CCchhHHHHHHHHHHHHHHHH
Q 041437 88 VIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDV-PDPTGKLQMVIDVAKDIDAHL 151 (156)
Q Consensus 88 iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~-~~~~~~~~~~~~~~k~ie~~l 151 (156)
...++. .+......++++.|.+ + +|.++|+.++.+..... ..-...+.....++..|.+|+
T Consensus 76 ~~~~~~-~~~~~~~~~~~~~~~~-~-~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 137 (139)
T cd07814 76 WAFSDE-TPGPETTVTVTLEETG-G-GTRLTLTHSGFPEEDAEQEAREGMEEGWTGTLDRLKALL 137 (139)
T ss_pred ecccCC-CCCCceEEEEEEEECC-C-CEEEEEEEEccChHhHHHHHHhCHhhHHHHHHHHHHHHh
Confidence 998753 1223457888999987 4 79999999988764310 001122334445666666655
No 19
>PRK10724 hypothetical protein; Provisional
Probab=99.30 E-value=8.1e-11 Score=87.05 Aligned_cols=133 Identities=13% Similarity=0.169 Sum_probs=96.0
Q ss_pred EEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEE
Q 041437 7 KVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNY 86 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y 86 (156)
.+..++.|++|++++|+++. |.+.+|+|+|. ..++++++-+++ +.+..++..-+|-...+..|.. +++ .+++.+
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~-Dve~yp~flp~-~~~s~vl~~~~~--~~~a~l~v~~~g~~~~f~srv~-~~~-~~~I~~ 89 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVN-DVQSYPQFLPG-CTGSRVLESTPG--QMTAAVDVSKAGISKTFTTRNQ-LTS-NQSILM 89 (158)
T ss_pred eEEEEEEecCCHHHHHHHHH-HHHHHHHhCcc-cCeEEEEEecCC--EEEEEEEEeeCCccEEEEEEEE-ecC-CCEEEE
Confidence 68889999999999999999 99999999996 777788764311 3344555544555566777754 544 448999
Q ss_pred EEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCch--hHHHHHHHHHHHHHHH
Q 041437 87 KVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPT--GKLQMVIDVAKDIDAH 150 (156)
Q Consensus 87 ~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~~--~~~~~~~~~~k~ie~~ 150 (156)
.+++|++ +.+.+.|++.|.+++ +|.|+++.+|+.......... -..+.+..|.+++++.
T Consensus 90 ~~~~GpF----~~l~g~W~f~p~~~~-~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~R 150 (158)
T PRK10724 90 QLVDGPF----KKLIGGWKFTPLSQE-ACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVR 150 (158)
T ss_pred EecCCCh----hhccceEEEEECCCC-CEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999864 778999999998766 899999999997655322111 1124455666666553
No 20
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.28 E-value=2.3e-10 Score=82.55 Aligned_cols=114 Identities=14% Similarity=0.061 Sum_probs=81.8
Q ss_pred eEEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceee---EEEec-CCCCCCccEEEEEEecCCCcceEEEEEEEeeCCc
Q 041437 6 NKVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQG---CDLLE-GEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNEN 81 (156)
Q Consensus 6 ~~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s---~~~~e-Gd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~ 81 (156)
.+++.++.|++|+++||+++. |+.++|+|.|. ... ++... +...++|+...++...+ ......++..++ .+
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~-D~~~~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~--~~~~~~~v~~~~-p~ 76 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVN-DLKNWPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDK--VGEGEMEITESV-PN 76 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHh-CcccCcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCc--ccceEEEEEecC-CC
Confidence 478999999999999999999 99999999995 333 22111 22246788877765421 123455666664 57
Q ss_pred cEEEEEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCC
Q 041437 82 YITNYKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNE 128 (156)
Q Consensus 82 ~~~~y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~ 128 (156)
+++.|+...++.. . ..+.+++++.|. ++ ||.++|+.+|+....
T Consensus 77 ~~i~~~~~~~~~~-~-~~~~~~~~~~~~-~~-gT~v~~~~~~~~~~~ 119 (150)
T cd07818 77 ERIEYELRFIKPF-E-ATNDVEFTLEPV-GG-GTKVTWGMSGELPFP 119 (150)
T ss_pred cEEEEEEEecCCc-c-ccceEEEEEEEc-CC-ceEEEEEEEecCCch
Confidence 7899999864321 1 366799999999 34 899999999987654
No 21
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.28 E-value=3.7e-10 Score=81.66 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=79.7
Q ss_pred EEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEec-CCCCCCccEEEEEEec-CCCcceEEEEEEEeeCCccEE
Q 041437 7 KVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLE-GEWGKPGCIICWRYFH-DGSPQIAKEIMEVIDNENYIT 84 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~e-Gd~~~~GsvR~~~~~~-~g~~~~~kErl~~~D~~~~~~ 84 (156)
.++.+..|++|+++||+++. |+..+|+|.|+ +.+++.++ |++.+.|+.-+..... .+....+.-++... +..+.+
T Consensus 2 ~~~~~~~i~ap~e~Vw~~~t-D~~~~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~-~p~~~~ 78 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDVLV-DAESWPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRI-EPLSLL 78 (146)
T ss_pred cceEEEEecCCHHHHHHHHh-Chhhcchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEee-cCCcEE
Confidence 35678899999999999999 99999999996 88998876 3324667665444321 22223455555554 567788
Q ss_pred EEEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcC
Q 041437 85 NYKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLN 127 (156)
Q Consensus 85 ~y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~ 127 (156)
+|+. +|++ + ...+++|.|.++ ||.|+++.+++..+
T Consensus 79 ~~~~-~g~~----~-~~~~~~~~~~~~--gt~vt~~~~~~~~~ 113 (146)
T cd07824 79 EVRA-SGDL----E-GVGRWTLAPDGS--GTVVRYDWEVRTTK 113 (146)
T ss_pred EEEE-EEee----e-EEEEEEEEEcCC--CEEEEEEEEEEcCH
Confidence 9984 6654 2 268899999643 79999999999765
No 22
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.22 E-value=1.9e-10 Score=81.10 Aligned_cols=104 Identities=18% Similarity=0.276 Sum_probs=75.7
Q ss_pred eCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEEEEEeccc
Q 041437 14 VKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKVIEGNL 93 (156)
Q Consensus 14 i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~ 93 (156)
|+||+++||+++. |.+++|+|+|. +.++++++.++ . +..-.+.....+....+..++... .... +.+..++|+
T Consensus 1 V~ap~~~V~~~i~-D~e~~~~~~p~-~~~v~vl~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~g~- 73 (130)
T PF03364_consen 1 VNAPPEEVWSVIT-DYENYPRFFPP-VKEVRVLERDG-D-GMRARWEVKFGGIKRSWTSRVTED-PPER-IRFEQISGP- 73 (130)
T ss_dssp ESS-HHHHHHHHT-TGGGHHHHCTT-EEEEEEEEEEC-C-EEEEEEEECTTTTCEEEEEEEEEE-CTTT-EEEESSETT-
T ss_pred CCCCHHHHHHHHH-HHHHHHHhCCC-CceEEEEEeCC-C-eEEEEEEEecCCEEEEEEEEEEEE-Eeee-eeeeecCCC-
Confidence 6899999999999 99999999996 88999987652 2 333355555455455667776543 4444 888888875
Q ss_pred cCCeEEEEEEEEEecCCC--CCCcEEEEEEEEEEcCC
Q 041437 94 LELYKSFCSTVKVTPKEN--DDGSLVHWIFEYEKLNE 128 (156)
Q Consensus 94 ~~~~~~y~~t~~v~p~~~--g~gs~v~W~~~~e~~~~ 128 (156)
++.+.+++++.|.++ | ||.++++.+++....
T Consensus 74 ---~~~~~g~W~~~~~~~~~~-g~~~~v~~~~~~~~~ 106 (130)
T PF03364_consen 74 ---FKSFEGSWRFEPLGGNEG-GTRTRVTYDYEVDPP 106 (130)
T ss_dssp ---EEEEEEEEEEEEETTECC-EEEEEEEEEEEEETS
T ss_pred ---chhcEEEEEEEECCCCcC-CCEEEEEEEEEEecC
Confidence 499999999999875 2 566777777766433
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.10 E-value=5.7e-09 Score=75.40 Aligned_cols=112 Identities=10% Similarity=0.001 Sum_probs=72.1
Q ss_pred EEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceE--EEEEEEeeCCccEEEE
Q 041437 9 ETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIA--KEIMEVIDNENYITNY 86 (156)
Q Consensus 9 ~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~--kErl~~~D~~~~~~~y 86 (156)
+.+++|++|+++||+++. |+..++.|.|+ +++++.++++ . ..-.++...++-...+ +=++..++.+.+.+++
T Consensus 2 ~~~~~v~a~pe~vw~~l~-D~~~~~~~~pg-~~~~~~~~~~--~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 75 (146)
T cd07823 2 ENEFTVPAPPDRVWALLL-DIERVAPCLPG-ASLTEVEGDD--E--YKGTVKVKLGPISASFKGTARLLEDDEAARRAVL 75 (146)
T ss_pred CceEEecCCHHHHHHHhc-CHHHHHhcCCC-ceeccccCCC--e--EEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEE
Confidence 568899999999999999 99999999997 8887754322 1 1122333322211122 2245555547888887
Q ss_pred EEEecccc-CCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCC
Q 041437 87 KVIEGNLL-ELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNE 128 (156)
Q Consensus 87 ~iieg~~~-~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~ 128 (156)
+.-..+.. .+--....++++.|. ++ +|.+.|+.+++..+.
T Consensus 76 ~~~g~~~~~~g~~~~~~~~~l~~~-~~-gT~v~~~~~~~~~g~ 116 (146)
T cd07823 76 EATGKDARGQGTAEATVTLRLSPA-GG-GTRVTVDTDLALTGK 116 (146)
T ss_pred EEEEecCCCcceEEEEEEEEEEec-CC-cEEEEEEEEEEEeeE
Confidence 75542111 111245667888884 34 899999999987655
No 24
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=99.02 E-value=4.8e-09 Score=78.23 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=90.2
Q ss_pred CCCCeEEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEec-CCCcceEEEEEEEeeCC
Q 041437 2 SQNGNKVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFH-DGSPQIAKEIMEVIDNE 80 (156)
Q Consensus 2 ~~~~~~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~-~g~~~~~kErl~~~D~~ 80 (156)
|+..-.++++++|+.|+|.||+.++ |+.++|.||.+ +.|+++.+-. + .+|+... .|-...+.-+|. -|..
T Consensus 66 ~~~~i~v~~~V~I~kPae~vy~~W~-dLe~lP~~Mkh-l~SVkVlddk---r---SrW~~~ap~g~~v~Wea~it-~d~~ 136 (217)
T COG5637 66 MAKPIEVEVQVTIDKPAEQVYAYWR-DLENLPLWMKH-LDSVKVLDDK---R---SRWKANAPLGLEVEWEAEIT-KDIP 136 (217)
T ss_pred ccCceEEEEEEEeCChHHHHHHHHH-hhhhhhHHHHh-hceeeccCCC---c---cceeEcCCCCceEEEeehhh-ccCC
Confidence 4556789999999999999999999 99999999997 9999976433 1 4566643 444456777765 5799
Q ss_pred ccEEEEEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCC
Q 041437 81 NYITNYKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNED 129 (156)
Q Consensus 81 ~~~~~y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~ 129 (156)
+.+|.|+=++|.-++. .+.++|.+..+. .|+|+.+.+|.+.++.
T Consensus 137 ~e~I~W~Sl~Ga~v~N----sG~VrF~~~pg~-~t~V~v~lsY~~Pgg~ 180 (217)
T COG5637 137 GERIQWESLPGARVEN----SGAVRFYDAPGD-STEVKVTLSYRPPGGL 180 (217)
T ss_pred CcEEeeecCCCCcCCC----CccEEeeeCCCC-ceEEEEEEEecCCccH
Confidence 9999999999964332 367888887765 8999999999988764
No 25
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.82 E-value=1.4e-07 Score=69.23 Aligned_cols=130 Identities=12% Similarity=0.048 Sum_probs=86.6
Q ss_pred eEEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEE
Q 041437 6 NKVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITN 85 (156)
Q Consensus 6 ~~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~ 85 (156)
..++.++.|++|+++||+++. |+..+++|+|. . .++ -.+|....+.+... .......++.++| +++++.
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~alt-dp~~~~~W~~~-~------~~~-~~~G~~~~~~~~~~-~~~~~~~~v~e~~-p~~~l~ 79 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALT-DPERLARWFAP-G------TGD-LRVGGRVEFVMDDE-EGPNATGTILACE-PPRLLA 79 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHc-CHHHHHhhcCC-C------CCC-cccCceEEEEecCC-CCCccceEEEEEc-CCcEEE
Confidence 468899999999999999999 99999999984 2 122 24455555555421 1234567777674 557888
Q ss_pred EEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCchhHHHHHHHHHHHHHHHHhcCCC
Q 041437 86 YKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQMVIDVAKDIDAHLLSQQP 156 (156)
Q Consensus 86 y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 156 (156)
|+...++ .....+++|.+.+ + ||.++.+.++.+... ......+.-..++..|.+|+-+..|
T Consensus 80 ~~~~~~~-----~~~~~~~~l~~~~-~-gT~v~~~~~~~~~~~---~~~~~~~GW~~~L~~Lk~~~e~~~~ 140 (157)
T cd08899 80 FTWGEGG-----GESEVRFELAPEG-D-GTRLTLTHRLLDERF---GAGAVGAGWHLCLDVLEAALEGGPP 140 (157)
T ss_pred EEecCCC-----CCceEEEEEEEcC-C-CEEEEEEEeccCchh---hhhhhcccHHHHHHHHHHHHcCCCC
Confidence 8876544 1225677888765 4 799988888765431 1222234455778888888876543
No 26
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.78 E-value=2.1e-07 Score=66.33 Aligned_cols=135 Identities=11% Similarity=0.096 Sum_probs=81.3
Q ss_pred EEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEE
Q 041437 7 KVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNY 86 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y 86 (156)
.++.++.|+||+++||+++. ++..+++|+|... ....-|. +..| .+.+. ++......-++..+ +..+.+.|
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~t-d~~~~~~W~~~~~--~~~~~~~-~~~g---~~~~~-~~~~~~~~~~i~~~-~p~~~l~~ 72 (145)
T cd08898 2 RIERTILIDAPRERVWRALT-DPEHFGQWFGVKL--GPFVVGE-GATG---EITYP-GYEHGVFPVTVVEV-DPPRRFSF 72 (145)
T ss_pred eeEEEEEecCCHHHHHHHhc-ChhhhhhcccccC--CCcccCC-ccee---EEecC-CCCccceEEEEEEe-CCCcEEEE
Confidence 57899999999999999999 9999999998632 1111121 1222 33333 22112445666666 56778888
Q ss_pred EEEecc----c-cCCeEEEEEEEEEecCCCCCCcEEEEEEE-EEEcCCCCC--CchhHHHHHHHHHHHHHHHHh
Q 041437 87 KVIEGN----L-LELYKSFCSTVKVTPKENDDGSLVHWIFE-YEKLNEDVP--DPTGKLQMVIDVAKDIDAHLL 152 (156)
Q Consensus 87 ~iieg~----~-~~~~~~y~~t~~v~p~~~g~gs~v~W~~~-~e~~~~~~~--~~~~~~~~~~~~~k~ie~~l~ 152 (156)
+..... . .........++++.+.+ + ||.|+++.. |...++... ......+.-..++..|++||-
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 73 RWHPPAIDPGEDYSAEPSTLVEFTLEPIA-G-GTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred EecCCCcccccccCCCCceEEEEEEEecC-C-cEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 865433 0 00112345788888875 3 799999976 432211100 111222444578888888875
No 27
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.74 E-value=3.4e-07 Score=66.60 Aligned_cols=136 Identities=13% Similarity=0.157 Sum_probs=89.2
Q ss_pred EEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcce--EEEEEEEeeCCccEE
Q 041437 7 KVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQI--AKEIMEVIDNENYIT 84 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~--~kErl~~~D~~~~~~ 84 (156)
.++.++.|++|+++||+.+. |++.+..-+|+ ++|++. +|+ . ..-.+.++.+--... .+=++..+|+..+++
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~-dpe~~a~ciPG-~qs~e~-~g~-e---~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~ 74 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLN-DPEQVAACIPG-VQSVET-NGD-E---YTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSI 74 (146)
T ss_pred cccceEEecCCHHHHHHHhc-CHHHHHhhcCC-cceeee-cCC-e---EEEEEEEeecceeEEEEEEEEEccccCCCcEE
Confidence 35678999999999999999 99999999997 999984 465 1 111222221111112 355666678889998
Q ss_pred EEEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCC-Cch---hH-HHHHHHHHHHHHHHHh
Q 041437 85 NYKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVP-DPT---GK-LQMVIDVAKDIDAHLL 152 (156)
Q Consensus 85 ~y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~-~~~---~~-~~~~~~~~k~ie~~l~ 152 (156)
+-+--.|. ....-...+.+.+.|.++ +|++.|.++-+..+.... -.. .. ...+...+..|..+|.
T Consensus 75 ~i~g~G~~-~~g~~~~~~~v~l~~~g~--gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~ 144 (146)
T COG3427 75 TINGSGGG-AAGFADGTVDVQLEPSGE--GTRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELA 144 (146)
T ss_pred EEEeeccc-ccceeeeeeEEEEEEcCC--CcEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88887733 335667778888888865 699999998776543211 011 11 1333456666666654
No 28
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.73 E-value=3.7e-07 Score=65.84 Aligned_cols=139 Identities=12% Similarity=-0.010 Sum_probs=81.1
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEe-cCCCcceEEEEEEEeeCCccEEEE
Q 041437 8 VETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYF-HDGSPQIAKEIMEVIDNENYITNY 86 (156)
Q Consensus 8 v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~-~~g~~~~~kErl~~~D~~~~~~~y 86 (156)
++.+..+++|+++||+++. +.+.+.+|+...--.+...+.|. .+|..-.+.+. .+|....+.=++++++ +.+++.|
T Consensus 2 l~i~r~~~ap~e~Vw~a~T-dpe~l~~W~~p~~~~~~~~~~d~-r~GG~~~~~~~~~~g~~~~~~g~~~ei~-p~~~l~~ 78 (142)
T cd07826 2 IVITREFDAPRELVFRAHT-DPELVKRWWGPRGLTMTVCECDI-RVGGSYRYVHRAPDGEEMGFHGVYHEVT-PPERIVQ 78 (142)
T ss_pred EEEEEEECCCHHHHHHHhC-CHHHHhhccCCCCCcceEEEEec-cCCCEEEEEEECCCCCEecceEEEEEEc-CCCEEEE
Confidence 5678899999999999999 88889999864322223334442 33333334333 2343334455667774 4555666
Q ss_pred EEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCC-CCchhHHHHHHHHHHHHHHHHhc
Q 041437 87 KVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDV-PDPTGKLQMVIDVAKDIDAHLLS 153 (156)
Q Consensus 87 ~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~-~~~~~~~~~~~~~~k~ie~~l~~ 153 (156)
+---.+.. + .....++++.+.+ | ||.++.+..|....... .......+.-..++.+|++||.+
T Consensus 79 t~~~~~~~-~-~~s~v~~~l~~~~-~-gT~l~l~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 142 (142)
T cd07826 79 TEEFEGLP-D-GVALETVTFTELG-G-RTRLTATSRYPSKEARDGVLASGMEEGMEESYDRLDELLAS 142 (142)
T ss_pred EeEecCCC-C-CceEEEEEEEECC-C-CEEEEEEEEeCCHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 54322211 1 2235688888875 4 79998886653211100 01112234556789999999863
No 29
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.72 E-value=3.8e-07 Score=64.21 Aligned_cols=133 Identities=14% Similarity=0.031 Sum_probs=79.8
Q ss_pred EEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEE
Q 041437 7 KVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNY 86 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y 86 (156)
+++.++.|+||+++||+++. |+..+++|.++.. .+++. .+|..-.+..... ....+.-++.+++ +++.+.|
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~t-d~~~~~~W~~~~~-----~~~~~-~~G~~~~~~~~~~-~~~~~~~~v~~~~-~~~~l~~ 71 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALT-DPEFTRQYWGGTT-----VESDW-KVGSAFEYRRGDD-GTVDVEGEVLESD-PPRRLVH 71 (136)
T ss_pred CeEEEEEecCCHHHHHHHHc-Cchhhhheecccc-----cccCC-cCCCeEEEEeCCC-cccccceEEEEec-CCCeEEE
Confidence 47889999999999999999 8999999998621 13332 3333323333311 1123455666664 6677777
Q ss_pred EEEecccc--CCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCchhHHHHHHHHHHHHHHHHh
Q 041437 87 KVIEGNLL--ELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQMVIDVAKDIDAHLL 152 (156)
Q Consensus 87 ~iieg~~~--~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 152 (156)
+...+... ..-.....++.+.|.++ +|.+..+.+....+. .......+....+++.|++||-
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~l~~~~~--~t~l~~~~~~~~~~~--~~~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 72 TWRAVWDPEMAAEPPSRVTFEIEPVGD--VVKLTVTHDGFPPGS--PTLEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred EEecCCCcccCCCCCEEEEEEEEecCC--cEEEEEEecCCCCch--hHHHhhhcCHHHHHHHHHHHhc
Confidence 76543321 12234567888888643 687777665432211 1122223445578888888763
No 30
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.69 E-value=3.3e-06 Score=60.68 Aligned_cols=137 Identities=19% Similarity=0.136 Sum_probs=80.3
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCCcccccCCCc-eeeEEEecCCCCCCccEEEEEE-ecCCCcceEEEEEEEeeCCccEEE
Q 041437 8 VETVVEVKAPAAKFHQVFSCKPHVAASMSPQS-IQGCDLLEGEWGKPGCIICWRY-FHDGSPQIAKEIMEVIDNENYITN 85 (156)
Q Consensus 8 v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~-i~s~~~~eGd~~~~GsvR~~~~-~~~g~~~~~kErl~~~D~~~~~~~ 85 (156)
++.+..++||+++||+++. +...+.+|+.+. --.+...+.|. .+|..-.+.+ ..+|......=++.++ ++.+++.
T Consensus 2 ~~i~r~~~ap~e~Vw~a~t-dp~~l~~W~~~~~~~~~~~~~~d~-~~Gg~~~~~~~~~~g~~~~~~g~~~~~-~p~~~l~ 78 (143)
T cd08900 2 FTLERTYPAPPERVFAAWS-DPAARARWFVPSPDWTVLEDEFDF-RVGGREVSRGGPKGGPEITVEARYHDI-VPDERIV 78 (143)
T ss_pred EEEEEEeCCCHHHHHHHhc-CHHHHHhcCCCCCCCceeeeEEec-CCCCEEEEEEECCCCCEEeeeEEEEEe-cCCceEE
Confidence 5667889999999999999 888999998530 11122223331 2333333333 2355444555667777 4566776
Q ss_pred EEEEe--ccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCchhHHHHHHHHHHHHHHHHh
Q 041437 86 YKVIE--GNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQMVIDVAKDIDAHLL 152 (156)
Q Consensus 86 y~iie--g~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 152 (156)
|+-.. ++. +......++.+.|.+ | +|.++.+...-...+. .......+.-..++..|++||-
T Consensus 79 ~t~~~~~~~~--~~~~s~v~~~l~~~~-~-gT~l~~~~~~~~~~~~-~~~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 79 YTYTMHIGGT--LLSASLATVEFAPEG-G-GTRLTLTEQGAFLDGD-DDPAGREQGTAALLDNLAAELE 142 (143)
T ss_pred EEEeeccCCc--cccceEEEEEEEECC-C-CEEEEEEEEEeccccc-chhhhHHHHHHHHHHHHHHHHh
Confidence 66532 221 112234788888875 3 7998888776332221 1122333445577888888874
No 31
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.67 E-value=1.6e-06 Score=61.63 Aligned_cols=128 Identities=18% Similarity=0.215 Sum_probs=78.9
Q ss_pred EEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceee--EEEecCCCCCCccEEEEEEe-cCCC-cceEEEEEEEeeCCcc
Q 041437 7 KVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQG--CDLLEGEWGKPGCIICWRYF-HDGS-PQIAKEIMEVIDNENY 82 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s--~~~~eGd~~~~GsvR~~~~~-~~g~-~~~~kErl~~~D~~~~ 82 (156)
+++.++.++||+++||+++. |.+.+.+|++. ... +...+.|. .+|..-.+.+. .+|. ...+.=++.++ ++.+
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~t-d~e~~~~W~~~-~~~~~~~~~~~d~-~~GG~~~~~~~~~~g~~~~~~~g~~~ei-~p~~ 76 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWT-TPEHITKWNFA-SDDWHCPSAENDL-RVGGKFSYRMEAKDGSMGFDFEGTYTEV-EPHK 76 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhC-CHHHHhhCCCC-CCCcccceeeecC-CcCCEEEEEEEcCCCCcccccceEEEEE-CCCC
Confidence 47788999999999999999 88899999643 111 11122342 34444333332 2332 12344556666 6678
Q ss_pred EEEEEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCchhHHHHHHHHHHHHHHHHh
Q 041437 83 ITNYKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQMVIDVAKDIDAHLL 152 (156)
Q Consensus 83 ~~~y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 152 (156)
++.|+..++ ...++++.|.+ + ||.++.+ +.+... ...+...+.-..++..|++||.
T Consensus 77 ~l~~~~~~~--------~~v~~~l~~~~-~-gT~l~l~--~~~~~~--~~~~~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 77 LIEYTMEDG--------REVEVEFTEEG-D-GTKVVET--FDAENE--NPVEMQRQGWQAILDNFKKYVE 132 (133)
T ss_pred EEEEEcCCC--------CEEEEEEEECC-C-CEEEEEE--ECCCCC--CcHHHHHHHHHHHHHHHHHHhh
Confidence 899986432 25788999875 4 7987765 433221 1223334555678889999885
No 32
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.63 E-value=8.5e-07 Score=63.53 Aligned_cols=134 Identities=16% Similarity=0.123 Sum_probs=77.9
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCCcccccCC-CceeeEEEecCCCCCCccEEEEEE-ecCCCcceEEEEEEEeeCCccEEE
Q 041437 8 VETVVEVKAPAAKFHQVFSCKPHVAASMSP-QSIQGCDLLEGEWGKPGCIICWRY-FHDGSPQIAKEIMEVIDNENYITN 85 (156)
Q Consensus 8 v~~~~~i~apadkvW~~~~~d~~~~p~~~p-~~i~s~~~~eGd~~~~GsvR~~~~-~~~g~~~~~kErl~~~D~~~~~~~ 85 (156)
++.+..|++|+++||+++. +...+.+|++ ..+.. ...+.+ ..+|..-.+.+ .++|......=++.++ +++++|.
T Consensus 2 l~~~r~i~ap~e~Vw~a~t-~p~~l~~W~~p~~~~~-~~~~~d-~~~GG~~~~~~~~~~g~~~~~~g~v~e~-~p~~~l~ 77 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWT-DPEHLAQWWGPEGFTN-TTHEFD-LRPGGRWRFVMHGPDGTDYPNRIVFLEI-EPPERIV 77 (139)
T ss_pred EEEEEEeCCCHHHHHHHhC-CHHHHhhccCcCCCcc-eEEEEE-ecCCCEEEEEEECCCCCEecceEEEEEE-cCCCEEE
Confidence 5778899999999999999 8888999974 22221 112223 12333323333 2244322234567777 5577888
Q ss_pred EEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCC-CchhHHHHHHHHHHHHHHHHh
Q 041437 86 YKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVP-DPTGKLQMVIDVAKDIDAHLL 152 (156)
Q Consensus 86 y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~-~~~~~~~~~~~~~k~ie~~l~ 152 (156)
|+...++ . ....++++.|.+ | ||.++.+..|........ ......+....++..|++||.
T Consensus 78 ~t~~~~~---~--~~~v~~~~~~~~-~-gT~ltl~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 78 YDHGSGP---P--RFRLTVTFEEQG-G-KTRLTWRQVFPTAAERCEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EEeccCC---C--cEEEEEEEEECC-C-CEEEEEEEEcCCHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 8875432 1 235788888875 4 899988876532110000 001112334577888888874
No 33
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.60 E-value=6.7e-06 Score=59.31 Aligned_cols=136 Identities=14% Similarity=0.083 Sum_probs=79.2
Q ss_pred EEEEEEEeCCCHHHHHHHHhcCCCcccccCCC-ceeeEEEecCCCCCCccEEEE--EEec------CCCcceEEEEEEEe
Q 041437 7 KVETVVEVKAPAAKFHQVFSCKPHVAASMSPQ-SIQGCDLLEGEWGKPGCIICW--RYFH------DGSPQIAKEIMEVI 77 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~-~i~s~~~~eGd~~~~GsvR~~--~~~~------~g~~~~~kErl~~~ 77 (156)
+++.+..|+||+++||+++. |...+.+|++. -+ .+...+.+ -.+|-.-.+ ++.. +|......=++.++
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~t-d~~~~~~W~~p~~~-~~~~~~~d-~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v 77 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFL-DPDALAKWLPPDGM-TGTVHEFD-AREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLEL 77 (146)
T ss_pred CEEEEEEECCCHHHHHHHHc-CHHHHhhcCCCCCe-EeEEEEEe-cccCCeEEEEEEcCCccccccCCcEeeeEEEEEEE
Confidence 36778899999999999999 89999999853 22 22222233 122222222 2221 12222344567777
Q ss_pred eCCccEEEEEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCchhHHHHHHHHHHHHHHHHh
Q 041437 78 DNENYITNYKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQMVIDVAKDIDAHLL 152 (156)
Q Consensus 78 D~~~~~~~y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 152 (156)
+.+++|.|+..-.+...+ .....++.+.+.+ + +|.++++...-+.. .......+.-..++..|++||-
T Consensus 78 -~p~~~i~~~~~~~~~~~~-~~~~v~~~~~~~~-~-~T~lt~~~~~~~~~---~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 78 -VPNERIVYTDVFDDPSLS-GEMTMTWTLSPVS-G-GTDVTIVQSGIPDG---IPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred -cCCCEEEEEEEecCCCCC-ceEEEEEEEEecC-C-CEEEEEEEeCCCch---hhhhHHHHHHHHHHHHHHHHhc
Confidence 456677777542211112 2346888888875 3 79998888643211 1122334555678888888874
No 34
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.58 E-value=4.2e-06 Score=60.34 Aligned_cols=108 Identities=17% Similarity=0.138 Sum_probs=68.3
Q ss_pred EEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCc--ceEEEEEEEeeCCccEEEEEE
Q 041437 11 VVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSP--QIAKEIMEVIDNENYITNYKV 88 (156)
Q Consensus 11 ~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~--~~~kErl~~~D~~~~~~~y~i 88 (156)
+++|++|+++||+++. |...+.+-+|+ +++++.+. + .--+. ++.+.+.-. ...+=++..+|++++.. .++
T Consensus 2 s~~v~a~~~~vw~~l~-D~~~l~~ciPG-~~~~e~~~-~-~~~~~---~~v~vG~i~~~~~g~~~~~~~~~~~~~~-~~~ 73 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLS-DPENLARCIPG-VESIEKVG-D-EYKGK---VKVKVGPIKGTFDGEVRITEIDPPESYT-LEF 73 (140)
T ss_dssp EEEECS-HHHHHHHHT--HHHHHHHSTT-EEEEEEEC-T-EEEEE---EEEESCCCEEEEEEEEEEEEEETTTEEE-EEE
T ss_pred cEEecCCHHHHHHHhc-CHHHHHhhCCC-cEEeeecC-c-EEEEE---EEEEeccEEEEEEEEEEEEEcCCCcceE-eee
Confidence 6789999999999999 99999999998 88988765 4 11111 222222211 12344555666666653 333
Q ss_pred EeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCC
Q 041437 89 IEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNE 128 (156)
Q Consensus 89 ieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~ 128 (156)
-..+.. .-.+..+.+++...+++ +|.|.|+++++..+.
T Consensus 74 ~g~g~~-~~~~~~~~~~~~~~~~~-~T~v~~~~~~~~~G~ 111 (140)
T PF06240_consen 74 EGRGRG-GGSSASANITLSLEDDG-GTRVTWSADVEVGGP 111 (140)
T ss_dssp EEEECT-CCEEEEEEEEEEECCCT-CEEEEEEEEEEEECH
T ss_pred eccCCc-cceEEEEEEEEEcCCCC-CcEEEEEEEEEEccC
Confidence 333322 22455566777666666 599999999997764
No 35
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.55 E-value=1.9e-06 Score=62.15 Aligned_cols=137 Identities=10% Similarity=-0.033 Sum_probs=76.6
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEE-ecCCCcceEEEEEEEeeCCccEEEE
Q 041437 8 VETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRY-FHDGSPQIAKEIMEVIDNENYITNY 86 (156)
Q Consensus 8 v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~-~~~g~~~~~kErl~~~D~~~~~~~y 86 (156)
+..+..|+||+++||+++. +...+.+|++..=-++...+.|. .+|..-++.+ ..+|......=++.++| ..+++.|
T Consensus 2 l~i~r~i~a~~e~Vw~a~t-~pe~~~~W~~p~~~~~~~~~~d~-~~GG~~~~~~~~~~g~~~~~~g~v~~i~-p~~~l~~ 78 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWT-EPELLKQWFCPKPWTTEVAELDL-RPGGAFRTVMRGPDGEEFPNPGCFLEVV-PGERLVF 78 (146)
T ss_pred eEEEEEeCCCHHHHHHHcC-CHHHHhccCCCCCccceEEEEEe-ecCcEEEEEEECCCCCEecceEEEEEEe-CCCEEEE
Confidence 5678899999999999999 88888999853100111112221 2222223333 23444333456677785 4566666
Q ss_pred EEE--eccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCchhH-----HHHHHHHHHHHHHHHhc
Q 041437 87 KVI--EGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK-----LQMVIDVAKDIDAHLLS 153 (156)
Q Consensus 87 ~ii--eg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~~~~-----~~~~~~~~k~ie~~l~~ 153 (156)
+-. ++.....-.....++++.|.+ + ||.++.+..+... ...+.. .+.-..++..|++||.+
T Consensus 79 t~~~~~~~~~~~~~~~~v~~~~~~~~-~-gT~Ltl~~~~~~~----~~~~~~~~~~~~~GW~~~l~~L~~~l~~ 146 (146)
T cd08896 79 TDALTPGWRPAEKPFMTAIITFEDEG-G-GTRYTARARHWTE----ADRKQHEEMGFHDGWGTAADQLAALAES 146 (146)
T ss_pred EEeecCCcCCCCCCcEEEEEEEEecC-C-cEEEEEEEEeCCH----HHHHHHHHcCHHHHHHHHHHHHHHHHhC
Confidence 632 221111111135688898874 3 7998876544211 011111 24456788899998853
No 36
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.49 E-value=8.8e-07 Score=64.13 Aligned_cols=113 Identities=15% Similarity=0.197 Sum_probs=86.6
Q ss_pred eEEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEE
Q 041437 6 NKVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITN 85 (156)
Q Consensus 6 ~~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~ 85 (156)
..++.+.-++.+|+++|+++. |....|+.+|- -...++.+.+ ....+-.++..-.|-..++.-|.. +++..+.|.
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~-dV~~YP~FlP~-C~~s~v~~~~--~~~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~ 76 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVN-DVESYPEFLPW-CSASRVLERN--ERELIAELDVGFKGIRETFTTRVT-LKPTARSID 76 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHH-HHHhCchhccc-cccceEeccC--cceeEEEEEEEhhheeeeeeeeee-ecCchhhhh
Confidence 357788889999999999999 89999999997 4455666665 233555565554454556666643 566666888
Q ss_pred EEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCC
Q 041437 86 YKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNE 128 (156)
Q Consensus 86 y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~ 128 (156)
-++++|++ +...++|++.|.+++ +|.|+...+|+..+-
T Consensus 77 ~~l~~GPF----k~L~~~W~F~pl~~~-~ckV~f~ldfeF~s~ 114 (146)
T COG2867 77 MKLIDGPF----KYLKGGWQFTPLSED-ACKVEFFLDFEFKSR 114 (146)
T ss_pred hhhhcCCh----hhhcCceEEEECCCC-ceEEEEEEEeeehhH
Confidence 88888875 667899999997665 999999999998865
No 37
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.44 E-value=2.8e-05 Score=58.57 Aligned_cols=141 Identities=11% Similarity=0.041 Sum_probs=85.5
Q ss_pred eEEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCC---cceEEEEEEEeeCCcc
Q 041437 6 NKVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGS---PQIAKEIMEVIDNENY 82 (156)
Q Consensus 6 ~~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~---~~~~kErl~~~D~~~~ 82 (156)
..+..+..|++|++++|+++. |.+..|+|.|. +.++++++-.+ ....+-.+.+....+ ...+..+-...+.++.
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~-d~e~~~~w~~~-~~~~~vie~~~-~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~ 117 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLR-DTESYPQWMPN-CKESRVLKRTD-DNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDG 117 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHh-hhHhHHHHHhh-cceEEEeecCC-CCcEEEEEEEecccccCCceEEEEEEEEEcCCCC
Confidence 567788899999999999999 99999999996 88999987541 112233333332211 1222222112222233
Q ss_pred EEEEEEEeccc--c--CC---eEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCC-chh-H-HHHHHHHHHHHHHHH
Q 041437 83 ITNYKVIEGNL--L--EL---YKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPD-PTG-K-LQMVIDVAKDIDAHL 151 (156)
Q Consensus 83 ~~~y~iieg~~--~--~~---~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~-~~~-~-~~~~~~~~k~ie~~l 151 (156)
.+...+...+. + .+ ...+.+.+.+.|.+++ +|.+.+...+++.+. .|. ... . ......+++++++.+
T Consensus 118 ~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~-~t~vt~~~~~dp~g~-iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 118 SVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNG-KTRVTYQAYADPGGS-IPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred EEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCC-eEEEEEEEEeCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444433321 1 11 4677788999998876 899999999988754 332 111 1 233446666666543
No 38
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.34 E-value=3.5e-05 Score=55.72 Aligned_cols=132 Identities=14% Similarity=-0.022 Sum_probs=73.7
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCCcccccCCCc-------eeeEEEecCCCCCC-ccEEEEEEecCCCcceEEEEEEEeeC
Q 041437 8 VETVVEVKAPAAKFHQVFSCKPHVAASMSPQS-------IQGCDLLEGEWGKP-GCIICWRYFHDGSPQIAKEIMEVIDN 79 (156)
Q Consensus 8 v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~-------i~s~~~~eGd~~~~-GsvR~~~~~~~g~~~~~kErl~~~D~ 79 (156)
++.++.|+||+++||+++. + .+.+|++.- ...|++ +- .+ |..+ +. ..+|. ....=++.++ +
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t-~--~l~~W~~p~~~~~~~~~~~~~~-d~---~~GG~~~-~~-~~~g~-~~~~g~v~~v-~ 70 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFT-E--GFGAWWPPEYHFVFSPGAEVVF-EP---RAGGRWY-EI-GEDGT-ECEWGTVLAW-E 70 (149)
T ss_pred eEEEEEecCCHHHHHHHHH-h--chhhccCCCcccccCCCccEEE-cc---cCCcEEE-Ee-cCCCc-EeceEEEEEE-c
Confidence 6789999999999999999 6 367786431 123332 21 12 3332 22 12343 2234566777 4
Q ss_pred CccEEEEEEEecc-c--cCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCC-CCC---chhHHHHHHHHHHHHHHHHh
Q 041437 80 ENYITNYKVIEGN-L--LELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNED-VPD---PTGKLQMVIDVAKDIDAHLL 152 (156)
Q Consensus 80 ~~~~~~y~iieg~-~--~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~-~~~---~~~~~~~~~~~~k~ie~~l~ 152 (156)
+.+++.|+-.-++ . .... .-..++++.|.+++ +|.++.+...-....+ ... .....+.-..++..|++||-
T Consensus 71 p~~~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~-gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~ 148 (149)
T cd08891 71 PPSRLVFTWQINADWRPDPDK-ASEVEVRFEAVGAE-GTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAE 148 (149)
T ss_pred CCCEEEEEeccCCCcCcCCCC-ceEEEEEEEECCCC-CeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhc
Confidence 5666777754221 1 1111 23578888887534 8999888876543221 001 11222334467788887763
No 39
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=5.4e-05 Score=55.26 Aligned_cols=139 Identities=15% Similarity=0.073 Sum_probs=79.5
Q ss_pred CCCeEEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCcc
Q 041437 3 QNGNKVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENY 82 (156)
Q Consensus 3 ~~~~~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~ 82 (156)
.....++.+..|++|+++||+++. |.+.+.+|+.+-=.+.+..-| .+....+... +|+.....-++.++ ..++
T Consensus 5 ~~~~~~~~er~i~aP~e~Vf~A~T-dpe~l~~W~~~~~~~~d~r~g----g~~~~~~~~~-~g~~~~~~~~~~~v-~p~~ 77 (149)
T COG3832 5 VEDRTLEIERLIDAPPEKVFEALT-DPELLARWFMPGGAEFDARTG----GGERVRFRGP-DGPVHSFEGEYLEV-VPPE 77 (149)
T ss_pred CCCceEEEEEeecCCHHHHHHHhc-CHHHHHhhcCCCCCccceecC----CceEEeeecC-CCCeeecceEEEEE-cCCc
Confidence 346789999999999999999999 899999998620011111112 1233344444 44444566777777 5567
Q ss_pred EEEEEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCch---hH--HHHHHHHHHHHHHHHh
Q 041437 83 ITNYKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPT---GK--LQMVIDVAKDIDAHLL 152 (156)
Q Consensus 83 ~~~y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~~---~~--~~~~~~~~k~ie~~l~ 152 (156)
+|.|+-.-.+...+...=..++++.+..+| + .++..........++.. .. .+.-..++..++++|.
T Consensus 78 rIv~tw~~~~~~~~~~~~~v~~~l~~~~~g-~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 78 RIVFTWDFDEDGEPFLKSLVTITLTPEDDG-G---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EEEEEeccCCCCCcccCceEEEEEEEecCC-C---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 777776655432122222467777776554 3 22333322222111211 11 3445678888887764
No 40
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.19 E-value=3.6e-05 Score=54.95 Aligned_cols=125 Identities=14% Similarity=0.061 Sum_probs=76.3
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEEE
Q 041437 8 VETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYK 87 (156)
Q Consensus 8 v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y~ 87 (156)
++.++.|+||+++||+++. +...+.+|.+. -.+.++. +|..-.+.+...+. ...=++.++ +..+++.|+
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t-~p~~l~~W~~~-~~~~~~~------~Gg~~~~~~~~~~~--~~~g~~~~~-~p~~~l~~~ 70 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFV-DPEITTKFWFT-GSSGRLE------EGKTVTWDWEMYGA--SVPVNVLEI-EPNKRIVIE 70 (136)
T ss_pred eeEEEEecCCHHHHHHHhc-CHHHhcccccc-CCCcccc------CCCEEEEEEEccCC--ceEEEEEEE-cCCCEEEEE
Confidence 5688999999999999999 88889997653 2233332 23233455544332 233456667 566788887
Q ss_pred EEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCchh------HHHHHHHHHHHHHHHHhc
Q 041437 88 VIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTG------KLQMVIDVAKDIDAHLLS 153 (156)
Q Consensus 88 iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~~~------~~~~~~~~~k~ie~~l~~ 153 (156)
.-.++ +. -..++++.+.++| +|.+..+...-+.. +++. ....-..++..|++||.+
T Consensus 71 w~~~~---~~--s~v~~~l~~~~~g-gT~ltl~~~~~~~~----~~~~~~~~~~~~~GW~~~L~~L~~~le~ 132 (136)
T cd08901 71 WGDPG---EP--TTVEWTFEELDDG-RTFVTITESGFPGT----DDEGLKQALGSTEGWTLVLAGLKAYLEH 132 (136)
T ss_pred ecCCC---CC--EEEEEEEEECCCC-cEEEEEEECCCCCC----cHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 65321 22 2468888887645 79887775532211 1111 113345678888888864
No 41
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.17 E-value=3.2e-05 Score=53.44 Aligned_cols=122 Identities=13% Similarity=0.033 Sum_probs=71.8
Q ss_pred CCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEEEEEecccc
Q 041437 15 KAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKVIEGNLL 94 (156)
Q Consensus 15 ~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~ 94 (156)
+||+++||+++. +...+.+|++......+...| |..+. . ..+|......=++.++++ +++|.|+.--++..
T Consensus 1 ~ap~e~Vw~a~t-~~~~~~~W~~~~~~~~~~~~G-----g~~~~-~-~~~g~~~~~~~~v~~~~p-~~~i~~~~~~~~~~ 71 (124)
T PF08327_consen 1 DAPPERVWEALT-DPEGLAQWFTTSEAEMDFRPG-----GSFRF-M-DPDGGEFGFDGTVLEVEP-PERIVFTWRMPDDP 71 (124)
T ss_dssp SSSHHHHHHHHH-SHHHHHHHSEEEEEEEECSTT-----EEEEE-E-ETTSEEEEEEEEEEEEET-TTEEEEEEEEETSS
T ss_pred CcCHHHHHHHHC-CHhHHhhccCCCcceeeeecC-----CEEEE-E-ecCCCCceeeEEEEEEeC-CEEEEEEEEccCCC
Confidence 689999999999 888899994321222222111 34444 2 245544445555778854 55688886544332
Q ss_pred CCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCchh-HHHHHHHHHHHHHHHH
Q 041437 95 ELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTG-KLQMVIDVAKDIDAHL 151 (156)
Q Consensus 95 ~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~~~-~~~~~~~~~k~ie~~l 151 (156)
. -.....++.|.+ .++ +|.+..+..-.+... .... .......++..|++||
T Consensus 72 ~-~~~~~v~~~~~~-~~~-~T~l~~~~~~~~~~~---~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 72 D-GPESRVTFEFEE-EGG-GTRLTLTHSGFPDDD---EEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp S-CEEEEEEEEEEE-ETT-EEEEEEEEEEEHSHH---HHHHCHHHHHHHHHHHHHHHH
T ss_pred C-CCceEEEEEEEE-cCC-cEEEEEEEEcCCccH---HHHHHHHHHHHHHHHHHHHHh
Confidence 1 234578889988 444 788887773221111 0111 3345567778888876
No 42
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.16 E-value=0.00013 Score=51.37 Aligned_cols=122 Identities=11% Similarity=0.016 Sum_probs=71.7
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEEE
Q 041437 8 VETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYK 87 (156)
Q Consensus 8 v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y~ 87 (156)
++.+..++||+++||+++. +...+.+|+.. ..+.+...| |..+ +. +| .+.=++.+++ ++++++|+
T Consensus 2 i~~~r~i~ap~e~Vw~A~T-~~e~l~~W~~~-~~~~d~~~G-----G~~~---~~-~g---~~~g~~~~i~-p~~~l~~~ 66 (126)
T cd08892 2 ISLTETFQVPAEELYEALT-DEERVQAFTRS-PAKVDAKVG-----GKFS---LF-GG---NITGEFVELV-PGKKIVQK 66 (126)
T ss_pred eEEEEEECCCHHHHHHHHC-CHHHHHhhcCC-CceecCCCC-----CEEE---Ee-CC---ceEEEEEEEc-CCCEEEEE
Confidence 5678899999999999999 88889999864 334433222 3333 22 33 2344566664 45666665
Q ss_pred EEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCchhHHHHHH-HHHHHHHHHH
Q 041437 88 VIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQMVI-DVAKDIDAHL 151 (156)
Q Consensus 88 iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~~~~~~~~~-~~~k~ie~~l 151 (156)
---.+.... ..-..++.+.+.+ + ||.+..+....+.. +.+...+.-. .++..|.++|
T Consensus 67 w~~~~~~~~-~~s~v~~~l~~~~-~-gT~ltl~~~g~~~~----~~~~~~~GW~~~~~~~l~~~~ 124 (126)
T cd08892 67 WRFKSWPEG-HYSTVTLTFTEKD-D-ETELKLTQTGVPAG----EEERTREGWERYYFESIKQTF 124 (126)
T ss_pred EEcCCCCCC-CcEEEEEEEEECC-C-CEEEEEEEECCCCc----hHHHHHhhHHHHHHHHHHHHh
Confidence 542221111 2235788888873 4 79887776654321 2222233333 4677777765
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.80 E-value=0.00048 Score=49.16 Aligned_cols=122 Identities=11% Similarity=-0.019 Sum_probs=65.7
Q ss_pred eCCCHHHHHHHHhcCCCcccccC-CCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEEEEEecc
Q 041437 14 VKAPAAKFHQVFSCKPHVAASMS-PQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKVIEGN 92 (156)
Q Consensus 14 i~apadkvW~~~~~d~~~~p~~~-p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~ 92 (156)
++||+++||+++- |.+.+.+|. +. ...++...| |.-+.+ .+ .+.=+.+++|+ .++|.|+---.+
T Consensus 1 f~ap~e~Vw~A~T-dp~~l~~w~~~~-~~~~d~~~G-----G~f~~~----~~---~~~G~~~ev~p-p~rlv~tw~~~~ 65 (132)
T PTZ00220 1 FYVPPEVLYNAFL-DAYTLTRLSLGS-PAEMDAKVG-----GKFSLF----NG---SVEGEFTELEK-PKKIVQKWRFRD 65 (132)
T ss_pred CCCCHHHHHHHHc-CHHHHHHHhcCC-CccccCCcC-----CEEEEe----cC---ceEEEEEEEcC-CCEEEEEEecCC
Confidence 4799999999999 888888884 32 222222222 222322 12 23335556644 445555543221
Q ss_pred ccCCeEEEEEEEEEecCCCCCCcEEEEEEE-EEEcCCC-C-CCchhHHHHHHH-HHHHHHHHHh
Q 041437 93 LLELYKSFCSTVKVTPKENDDGSLVHWIFE-YEKLNED-V-PDPTGKLQMVID-VAKDIDAHLL 152 (156)
Q Consensus 93 ~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~-~e~~~~~-~-~~~~~~~~~~~~-~~k~ie~~l~ 152 (156)
...... -..|+.+.|.++| +|.++.+.. +...... . ...+...+.-.. ++..|++||-
T Consensus 66 ~~~~~~-s~vt~~~~~~~~g-~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l~ 127 (132)
T PTZ00220 66 WEEDVY-SKVTIEFRAVEED-HTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKILG 127 (132)
T ss_pred CCCCCc-eEEEEEEEeCCCC-cEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHhC
Confidence 111111 2478888887655 899888877 4322110 0 112333344444 6888888773
No 44
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.62 E-value=0.0065 Score=46.76 Aligned_cols=122 Identities=14% Similarity=0.080 Sum_probs=76.7
Q ss_pred EEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEe-c--C--CCcceEEEEEEEeeCCc
Q 041437 7 KVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYF-H--D--GSPQIAKEIMEVIDNEN 81 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~-~--~--g~~~~~kErl~~~D~~~ 81 (156)
.+..+.++++|++++|+++. |....++|.+. ++++++++--+... .+-++.+. + . .+...+.-+....+...
T Consensus 46 ~~~ge~~v~as~~~v~~ll~-D~~~r~~Wd~~-~~~~~vl~~~~~d~-~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~ 122 (205)
T cd08874 46 GFLGAGVIKAPLATVWKAVK-DPRTRFLYDTM-IKTARIHKTFTEDI-CLVYLVHETPLCLLKQPRDFCCLQVEAKEGEL 122 (205)
T ss_pred eEEEEEEEcCCHHHHHHHHh-CcchhhhhHHh-hhheeeeeecCCCe-EEEEEEecCCCCCCCCCCeEEEEEEEEECCCc
Confidence 34567889999999999999 99999999995 99999987431122 33333332 1 1 12223333322223333
Q ss_pred cEEEEEEEecc-cc--C----CeEEEEEEEEEecC---CCCCCcEEEEEEEEEEcCCCCCC
Q 041437 82 YITNYKVIEGN-LL--E----LYKSFCSTVKVTPK---ENDDGSLVHWIFEYEKLNEDVPD 132 (156)
Q Consensus 82 ~~~~y~iieg~-~~--~----~~~~y~~t~~v~p~---~~g~gs~v~W~~~~e~~~~~~~~ 132 (156)
..+.-+-+.-+ .+ . ....+.+-+.+.|. ++| .|.+.+....+|.++++|.
T Consensus 123 ~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~-~t~vty~~q~DPggg~iP~ 182 (205)
T cd08874 123 SVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQ-YTRVIYIAQVALCGPDVPA 182 (205)
T ss_pred EEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCC-cEEEEEEEEECCCCCCCCH
Confidence 33333333332 11 1 23667788899997 666 8999999999998766654
No 45
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.56 E-value=0.014 Score=45.84 Aligned_cols=144 Identities=10% Similarity=0.089 Sum_probs=90.5
Q ss_pred EEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEec---CCCcceEEEEEEE--eeCCc
Q 041437 7 KVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFH---DGSPQIAKEIMEV--IDNEN 81 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~---~g~~~~~kErl~~--~D~~~ 81 (156)
.+..+..+++|++++++++. |....++|.+. ..++++++--+...+ +-++.+.. -.+...+.-+-.. .+..+
T Consensus 78 ~fk~e~~vd~s~~~v~dlL~-D~~~R~~WD~~-~~e~evI~~id~d~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~ 154 (235)
T cd08873 78 SFCVELKVQTCASDAFDLLS-DPFKRPEWDPH-GRSCEEVKRVGEDDG-IYHTTMPSLTSEKPNDFVLLVSRRKPATDGD 154 (235)
T ss_pred EEEEEEEecCCHHHHHHHHh-Ccchhhhhhhc-ccEEEEEEEeCCCcE-EEEEEcCCCCCCCCceEEEEEEEEeccCCCC
Confidence 46778889999999999999 89999999996 889999873211222 23333321 1112223222221 22222
Q ss_pred -cEEEEEEEeccc-c--C---CeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCC--CCCchhHHHHHHHHHHHHHHHHh
Q 041437 82 -YITNYKVIEGNL-L--E---LYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNED--VPDPTGKLQMVIDVAKDIDAHLL 152 (156)
Q Consensus 82 -~~~~y~iieg~~-~--~---~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~--~~~~~~~~~~~~~~~k~ie~~l~ 152 (156)
..+..+-+.-+. + + ....+.+-+.+.|.++| +|.|.+....+|.--. ..+..++-..+...|+..+.||.
T Consensus 155 ~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~-~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (235)
T cd08873 155 PYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGT-CTEVSYYNETNPKLLSYVTCNLAGLSALYCRTFHCCEQFLV 233 (235)
T ss_pred eEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCC-cEEEEEEEEcCCCccceeeecchhhhHHHHHHHHHHHHHhc
Confidence 344444444221 1 1 34778899999999877 8999999888775321 12345555667778888899987
Q ss_pred cC
Q 041437 153 SQ 154 (156)
Q Consensus 153 ~~ 154 (156)
.|
T Consensus 234 ~~ 235 (235)
T cd08873 234 TN 235 (235)
T ss_pred cC
Confidence 54
No 46
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=97.40 E-value=0.019 Score=41.68 Aligned_cols=96 Identities=13% Similarity=0.173 Sum_probs=64.8
Q ss_pred CHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEEEEEe-ccccC
Q 041437 17 PAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKVIE-GNLLE 95 (156)
Q Consensus 17 padkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iie-g~~~~ 95 (156)
..+++|+-+......-..+.|+ +.+|++++.+ +.-..|.++|+. ..++|++.. ....++.|.+-. |+.
T Consensus 18 Tr~QlW~GL~~kar~p~~Fvp~-i~~c~Vl~e~--~~~l~Rel~f~~----~~v~e~vt~--~~~~~v~f~~~~~g~~-- 86 (141)
T cd08863 18 TRAQLWRGLVLRAREPQLFVPG-LDRCEVLSES--GTVLERELTFGP----AKIRETVTL--EPPSRVHFLQADAGGT-- 86 (141)
T ss_pred CHHHHHhHHHhhhCCchhcccc-cceEEEEecC--CCEEEEEEEECC----ceEEEEEEe--cCCcEEEEEecCCCCe--
Confidence 3569999998666666677785 9999999865 224569999973 389999764 567889999887 322
Q ss_pred CeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCC
Q 041437 96 LYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPD 132 (156)
Q Consensus 96 ~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~ 132 (156)
.++.+....+| .+-.++.|+....+..+
T Consensus 87 ------l~~~iee~~~g---~L~lrf~ye~~~p~~~~ 114 (141)
T cd08863 87 ------LTNTIEEPEDG---ALYLRFVYETTLPEVAE 114 (141)
T ss_pred ------EEEEeccCCCC---cEEEEEEEEecCCCcCc
Confidence 23333322222 35677788876655443
No 47
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=97.12 E-value=0.053 Score=41.72 Aligned_cols=143 Identities=10% Similarity=0.098 Sum_probs=78.2
Q ss_pred eEEEEEEEeCCCHHHHH-HHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEec-CCC---cceEEEEEEEeeCC
Q 041437 6 NKVETVVEVKAPAAKFH-QVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFH-DGS---PQIAKEIMEVIDNE 80 (156)
Q Consensus 6 ~~v~~~~~i~apadkvW-~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~-~g~---~~~~kErl~~~D~~ 80 (156)
..+..+..+++|++++| .++. |....++|.+. +.++++++--+..---++.++... +++ ..++.-|-..-+..
T Consensus 49 ~~fk~~~~v~~~~~~l~~~ll~-D~~~~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~ 126 (209)
T cd08906 49 KTFILKAFMQCPAELVYQEVIL-QPEKMVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRD 126 (209)
T ss_pred cEEEEEEEEcCCHHHHHHHHHh-ChhhccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCC
Confidence 55778899999999998 5777 99999999996 888888763211111112222211 111 23344343333344
Q ss_pred ccE-EEEEEEecccc--CCe---E-EEEEEEEEec-CCCCCCcEEEEEEEEEEcCCCCCC-ch--hHHHHHHHHHHHHHH
Q 041437 81 NYI-TNYKVIEGNLL--ELY---K-SFCSTVKVTP-KENDDGSLVHWIFEYEKLNEDVPD-PT--GKLQMVIDVAKDIDA 149 (156)
Q Consensus 81 ~~~-~~y~iieg~~~--~~~---~-~y~~t~~v~p-~~~g~gs~v~W~~~~e~~~~~~~~-~~--~~~~~~~~~~k~ie~ 149 (156)
+.. +..++.-...+ ++| . ...+-+...+ .+.+ +|.+.|....+|.+. .|. .. ...+....+++.|.+
T Consensus 127 ~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~-~t~vt~~~~~Dp~G~-lP~~lvN~~~~~~~~~~~~~LR~ 204 (209)
T cd08906 127 RYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPS-VCTFIWILNTDLKGR-LPRYLIHQSLAATMFEFASHLRQ 204 (209)
T ss_pred cEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCC-ceEEEEEEecCCCCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 422 33333222221 122 2 2223333333 4444 899999999998875 332 11 112444567777777
Q ss_pred HHh
Q 041437 150 HLL 152 (156)
Q Consensus 150 ~l~ 152 (156)
++.
T Consensus 205 ~~~ 207 (209)
T cd08906 205 RIR 207 (209)
T ss_pred HHh
Confidence 664
No 48
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=97.05 E-value=0.044 Score=40.17 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=56.3
Q ss_pred EEEEEEeCCCH--------HHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeC
Q 041437 8 VETVVEVKAPA--------AKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDN 79 (156)
Q Consensus 8 v~~~~~i~apa--------dkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~ 79 (156)
+++.+.||-|. ++||+-+......-..++|+ |.+|++++-. +..-.|.++|. + ..++|++.. .
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~p~~Fvp~-i~~c~Vl~e~--~~~~~R~v~fg--~--~~v~E~v~~--~ 72 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLVLKARNPQLFVPG-IDSCEVLSES--DTVLTREVTFG--G--ATVRERVTL--Y 72 (149)
T ss_dssp EEEEEE------------HHHHHHHHHHHHH-GGGT-TT---EEEEEEE---SSEEEEEEEET--T--EEEEEEEEE--E
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHHHHHhChhhCccc-cCeEEEEecC--CCeEEEEEEEC--C--cEEEEEEEE--e
Confidence 45555555544 57999998655566678885 9999998754 44678999993 3 489999764 4
Q ss_pred CccEEEEEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEc
Q 041437 80 ENYITNYKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKL 126 (156)
Q Consensus 80 ~~~~~~y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~ 126 (156)
+..++.|....|. + -++.+.... ...+-.++.|+-.
T Consensus 73 ~~~~V~f~~~~Gs------~--lt~~I~e~~---~g~L~ltf~ye~~ 108 (149)
T PF08982_consen 73 PPERVDFAQHDGS------S--LTNIISEPE---PGDLFLTFTYEWR 108 (149)
T ss_dssp TTTEEEESSSBEE------E--EEEEEEEEE---TTEEEEEEEEEEE
T ss_pred CCcEEEEEcCCCC------E--EEEEEecCC---CCcEEEEEEEEec
Confidence 5667888222222 2 333333222 2256667777665
No 49
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=97.05 E-value=0.035 Score=42.64 Aligned_cols=144 Identities=8% Similarity=0.045 Sum_probs=83.9
Q ss_pred eEEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEec-CC---CcceEEEEEEEeeCCc
Q 041437 6 NKVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFH-DG---SPQIAKEIMEVIDNEN 81 (156)
Q Consensus 6 ~~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~-~g---~~~~~kErl~~~D~~~ 81 (156)
..+..+..+++|+++++..+-+|.+..++|.+. +.++++++--+...--++.+.... ++ +...+.-|....++.+
T Consensus 49 k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~ 127 (209)
T cd08905 49 KVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST 127 (209)
T ss_pred cEEEEEEEecCCHHHHHHHHHhchhhhceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence 456788899999999994444488899999996 778887763211111123222111 11 1223333333333444
Q ss_pred cEEEEEEEeccccC------CeEEEEEEEEEecCCC--CCCcEEEEEEEEEEcCCCCCC-c-hhH-HHHHHHHHHHHHHH
Q 041437 82 YITNYKVIEGNLLE------LYKSFCSTVKVTPKEN--DDGSLVHWIFEYEKLNEDVPD-P-TGK-LQMVIDVAKDIDAH 150 (156)
Q Consensus 82 ~~~~y~iieg~~~~------~~~~y~~t~~v~p~~~--g~gs~v~W~~~~e~~~~~~~~-~-~~~-~~~~~~~~k~ie~~ 150 (156)
..+.....+-+..+ ....+.+-+.+.|.++ + +|.+.|.+..++.+. .|. . ... .+.....++.|.++
T Consensus 128 ~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~-~t~v~~~~~~DpkG~-iP~~lvN~~~~~~~~~~~~~Lr~~ 205 (209)
T cd08905 128 CVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPS-KTKLTWLLSIDLKGW-LPKSIINQVLSQTQVDFANHLRQR 205 (209)
T ss_pred EEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCC-ceEEEEEEeecCCCC-CCHHHHHHHhHHhHHHHHHHHHHH
Confidence 33322223333221 2356678888999865 4 899999999998877 332 1 122 24445777777777
Q ss_pred Hh
Q 041437 151 LL 152 (156)
Q Consensus 151 l~ 152 (156)
+.
T Consensus 206 ~~ 207 (209)
T cd08905 206 MA 207 (209)
T ss_pred Hh
Confidence 65
No 50
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=96.97 E-value=0.11 Score=39.71 Aligned_cols=145 Identities=10% Similarity=0.095 Sum_probs=83.7
Q ss_pred EEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecC-CC---cceEEEEEEEeeCCcc
Q 041437 7 KVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHD-GS---PQIAKEIMEVIDNENY 82 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~-g~---~~~~kErl~~~D~~~~ 82 (156)
.+..+..+++|+++++..+-.|.+..++|.+. +.++++++.-++..--+......+. .+ ...+--|....++...
T Consensus 49 ~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~ 127 (208)
T cd08868 49 VFRLTGVLDCPAEFLYNELVLNVESLPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY 127 (208)
T ss_pred EEEEEEEEcCCHHHHHHHHHcCccccceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeE
Confidence 46678899999999987554488889999996 7777777643112111222221111 11 1223223223334333
Q ss_pred EEEEEEEecccc---CC---eEEEEEEEEEecCCCC-CCcEEEEEEEEEEcCCCCCC-ch-hH-HHHHHHHHHHHHHHHh
Q 041437 83 ITNYKVIEGNLL---EL---YKSFCSTVKVTPKEND-DGSLVHWIFEYEKLNEDVPD-PT-GK-LQMVIDVAKDIDAHLL 152 (156)
Q Consensus 83 ~~~y~iieg~~~---~~---~~~y~~t~~v~p~~~g-~gs~v~W~~~~e~~~~~~~~-~~-~~-~~~~~~~~k~ie~~l~ 152 (156)
.+...-++-+.. .+ ...+.+.+.+.|.+++ ++|.+.|.+..++.+. .|. .. .. ......+++.|.+++.
T Consensus 128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~~lvN~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08868 128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQYLVDQALASVLLDFMKHLRKRIA 206 (208)
T ss_pred EEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-CcceeeehhhHHHHHHHHHHHHHHHh
Confidence 333333442221 12 3456677888887543 3799999999998866 332 22 22 3455578888888875
Q ss_pred c
Q 041437 153 S 153 (156)
Q Consensus 153 ~ 153 (156)
+
T Consensus 207 ~ 207 (208)
T cd08868 207 T 207 (208)
T ss_pred h
Confidence 3
No 51
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.86 E-value=0.12 Score=40.83 Aligned_cols=115 Identities=10% Similarity=0.046 Sum_probs=70.0
Q ss_pred EEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecC-CC---cceEEEEEEEeeCCcc
Q 041437 7 KVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHD-GS---PQIAKEIMEVIDNENY 82 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~-g~---~~~~kErl~~~D~~~~ 82 (156)
.+..+..+++|++++++++. |....++|.++ +.++++++--+..- .+..++..+- ++ ...+.-+-...+.++.
T Consensus 82 ~fK~e~~vd~s~e~v~~lL~-D~~~r~~Wd~~-~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g 158 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLLS-DLRRRPEWDKH-YRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDNG 158 (240)
T ss_pred EEEEEEEEcCCHHHHHHHHh-ChhhhhhhHhh-ccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCCC
Confidence 45677899999999999998 99999999996 88999986421122 2554443321 11 1222222111222222
Q ss_pred ---EEEEEEEecc-cc--C---CeEEEEEEEEEecCCCCCCcEEEEEEEEEE
Q 041437 83 ---ITNYKVIEGN-LL--E---LYKSFCSTVKVTPKENDDGSLVHWIFEYEK 125 (156)
Q Consensus 83 ---~~~y~iieg~-~~--~---~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~ 125 (156)
.+....+.-+ .+ + ...++.+-+.+.|.+++ +|.+.+...-+|
T Consensus 159 ~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~-~t~vtY~~~~dP 209 (240)
T cd08913 159 DPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQ-LTKVSYYNQATP 209 (240)
T ss_pred ccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCC-cEEEEEEEEeCC
Confidence 2333334333 22 1 23667788999998776 899988665554
No 52
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.82 E-value=0.095 Score=41.25 Aligned_cols=140 Identities=12% Similarity=0.086 Sum_probs=79.1
Q ss_pred eEEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEec--CCC-cceEEEEE--EEeeCC
Q 041437 6 NKVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFH--DGS-PQIAKEIM--EVIDNE 80 (156)
Q Consensus 6 ~~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~--~g~-~~~~kErl--~~~D~~ 80 (156)
..+..+..+++|++++++++. |....++|.++ ..++++++--+..-- |..++-.+ ..+ ...+.-+- ...++.
T Consensus 78 l~fk~e~~vdvs~~~l~~LL~-D~~~r~~Wd~~-~~e~~vI~qld~~~~-vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg 154 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLLS-DFTKRPLWDPH-FLSCEVIDWVSEDDQ-IYHITCPIVNNDKPKDLVVLVSRRKPLKDG 154 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHHh-ChhhhchhHHh-hceEEEEEEeCCCcC-EEEEecCCCCCCCCceEEEEEEEEecCCCC
Confidence 357778899999999999999 99999999996 778888763211112 66654322 111 11222111 111122
Q ss_pred c-cEEEEEEEecc-cc--C---CeEE-EEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCC----chhHHHHHHHHHHHHH
Q 041437 81 N-YITNYKVIEGN-LL--E---LYKS-FCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPD----PTGKLQMVIDVAKDID 148 (156)
Q Consensus 81 ~-~~~~y~iieg~-~~--~---~~~~-y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~----~~~~~~~~~~~~k~ie 148 (156)
+ ..+.-.-+..+ ++ + .... +.|. .+.|.+++ +|.|.+....+| +..|- ..++...+...|+.-.
T Consensus 155 ~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~-~~~VtY~~~~dP--g~lp~~~~n~~~~~~~~~~~~~~~~ 230 (236)
T cd08914 155 NTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSN-SCTVSYFNQISA--SILPYFAGNLGGWSKSIEETAASCI 230 (236)
T ss_pred CEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCC-cEEEEEEEEcCC--ccchheEEecchhhhHHHHHHHHHH
Confidence 2 33333333332 21 1 2344 4444 78898777 999999999988 43432 2343333334444444
Q ss_pred HHHh
Q 041437 149 AHLL 152 (156)
Q Consensus 149 ~~l~ 152 (156)
.||.
T Consensus 231 ~~~~ 234 (236)
T cd08914 231 QFLE 234 (236)
T ss_pred HHHh
Confidence 4443
No 53
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.19 Score=36.29 Aligned_cols=138 Identities=14% Similarity=0.062 Sum_probs=87.1
Q ss_pred eEEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEec-CCC-cceEEEEEEE--eeCCc
Q 041437 6 NKVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFH-DGS-PQIAKEIMEV--IDNEN 81 (156)
Q Consensus 6 ~~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~-~g~-~~~~kErl~~--~D~~~ 81 (156)
+++.....|++|.|-||+..+ ..+++...-|..+ +-.-+|+.-..|+--.+.+.+ +-+ ..+++-|+++ .| ..
T Consensus 2 ~tF~~~~~i~aP~E~VWafhs-rpd~lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d-~~ 77 (153)
T COG4276 2 GTFVYRTTITAPHEMVWAFHS-RPDALQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFD-NG 77 (153)
T ss_pred cceEEeeEecCCHHHHhhhhc-CccHHHhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccC-Cc
Confidence 567888999999999999999 7788877777533 323345311223322222221 211 2478888777 64 45
Q ss_pred cEEEEEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCchhHH--H-HHHHHHHHHHHHH
Q 041437 82 YITNYKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKL--Q-MVIDVAKDIDAHL 151 (156)
Q Consensus 82 ~~~~y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~~~~~--~-~~~~~~k~ie~~l 151 (156)
..++=..+.|++ +.-+..-+.++.+.++ +|.+.=++.|+...+..-..-.++ . ....||+.-+.-+
T Consensus 78 ~~FtDv~i~gPf--p~~~WrHtH~F~~egg--~TvliD~Vsye~p~g~~~~~~g~~l~q~~l~~mFr~Rhs~l 146 (153)
T COG4276 78 SRFTDVCITGPF--PALNWRHTHNFVDEGG--GTVLIDSVSYELPAGTLTGMFGYRLTQLILDLMFRSRHSTL 146 (153)
T ss_pred ceeeeeeecCCc--cceeeEEEeeeecCCC--cEEEEeeEEeeccCcceechhhhhhHHHHHHHHHHHHHHHH
Confidence 667778888887 4446778888888753 799999999998766322222222 2 3346776554444
No 54
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.35 E-value=0.26 Score=37.76 Aligned_cols=140 Identities=11% Similarity=0.071 Sum_probs=80.5
Q ss_pred eEEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCc-ceEEEEE------EEee
Q 041437 6 NKVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSP-QIAKEIM------EVID 78 (156)
Q Consensus 6 ~~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~-~~~kErl------~~~D 78 (156)
..+..+..|++|++++.+++. |.+..++|.|.+. +++.++.. +..-.+-++.+. .+. ..-||=+ +.++
T Consensus 46 ~~~k~e~~i~~~~~~~~~vl~-d~~~~~~W~p~~~-~~~~l~~~-~~~~~v~y~~~~--~PwPv~~RD~v~~~~~~~~~~ 120 (215)
T cd08877 46 LSLRMEGEIDGPLFNLLALLN-EVELYKTWVPFCI-RSKKVKQL-GRADKVCYLRVD--LPWPLSNREAVFRGFGVDRLE 120 (215)
T ss_pred EEEEEEEEecCChhHeEEEEe-hhhhHhhhcccce-eeEEEeec-CCceEEEEEEEe--CceEecceEEEEEEEEEeeec
Confidence 457788899999999999999 8899999999744 54555432 111222333322 110 0112211 2222
Q ss_pred CCccEEE--EEEEecc----------ccC------CeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCC-chh--HH
Q 041437 79 NENYITN--YKVIEGN----------LLE------LYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPD-PTG--KL 137 (156)
Q Consensus 79 ~~~~~~~--y~iieg~----------~~~------~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~-~~~--~~ 137 (156)
++..+. -.-+..+ ++. ....+.+-+.++|.+++ +|.+++.+..+|.+.-+|. ... .+
T Consensus 121 -~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~-~t~v~~~~~~DP~g~~IP~~liN~~~k 198 (215)
T cd08877 121 -ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPT-KCYLRFVANVDPKMSLVPKSLLNFVAR 198 (215)
T ss_pred -cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCC-CeEEEEEEEcCCCcccCCHHHHHHHHH
Confidence 333322 2222210 111 23677888899998877 8999999888876653332 111 13
Q ss_pred HHHHHHHHHHHHHHh
Q 041437 138 QMVIDVAKDIDAHLL 152 (156)
Q Consensus 138 ~~~~~~~k~ie~~l~ 152 (156)
+++..+++.|.+.+.
T Consensus 199 ~~~~~~~~~l~k~~~ 213 (215)
T cd08877 199 KFAGLLFEKIQKAAK 213 (215)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555577777776654
No 55
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=96.04 E-value=0.38 Score=35.20 Aligned_cols=119 Identities=8% Similarity=0.042 Sum_probs=71.4
Q ss_pred eEEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCC---cceEEEEEEEeeC-Cc
Q 041437 6 NKVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGS---PQIAKEIMEVIDN-EN 81 (156)
Q Consensus 6 ~~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~---~~~~kErl~~~D~-~~ 81 (156)
..+..+..+++|++++|+++. |.+..++|-|. +.++++++-.. ..-.+.+..+....+ ...+--+-...++ ..
T Consensus 39 ~~~k~~~~i~~~~~~v~~~l~-d~~~~~~w~~~-~~~~~vl~~~~-~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~ 115 (193)
T cd00177 39 KLLKAEGVIPASPEQVFELLM-DIDLRKKWDKN-FEEFEVIEEID-EHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGT 115 (193)
T ss_pred eeEEEEEEECCCHHHHHHHHh-CCchhhchhhc-ceEEEEEEEeC-CCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCe
Confidence 456678889999999999999 78888999995 88888887531 223455555543221 1122222112223 22
Q ss_pred cEEEEEEEecc-cc--CC-e--EEEEEEEEEecCCCCCCcEEEEEEEEEEcCC
Q 041437 82 YITNYKVIEGN-LL--EL-Y--KSFCSTVKVTPKENDDGSLVHWIFEYEKLNE 128 (156)
Q Consensus 82 ~~~~y~iieg~-~~--~~-~--~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~ 128 (156)
..+...=++.+ .+ .+ . ..+.+-+.+.|.+++ +|.+.+....++.+.
T Consensus 116 ~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~-~~~vt~~~~~D~~g~ 167 (193)
T cd00177 116 YVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPG-KTKVTYVLQVDPKGS 167 (193)
T ss_pred EEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCC-CEEEEEEEeeCCCCC
Confidence 22222222222 11 11 1 233456778888666 899999999988865
No 56
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=95.98 E-value=0.5 Score=36.08 Aligned_cols=141 Identities=9% Similarity=0.037 Sum_probs=80.2
Q ss_pred EEEEEEEe-CCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCC-CCccEEEEEEecC---CCcceEEEEEEEee-CC
Q 041437 7 KVETVVEV-KAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWG-KPGCIICWRYFHD---GSPQIAKEIMEVID-NE 80 (156)
Q Consensus 7 ~v~~~~~i-~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~-~~GsvR~~~~~~~---g~~~~~kErl~~~D-~~ 80 (156)
.+....++ ++|++.+++++. |....++|.+. +.++++++-+.. +.- |-++.+..- ....++--|-...| +.
T Consensus 51 ~~k~~~~~~~~s~~~~~~~l~-D~~~r~~Wd~~-~~~~~~le~~~~~~~~-i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 127 (209)
T cd08870 51 EYLVRGVFEDCTPELLRDFYW-DDEYRKKWDET-VIEHETLEEDEKSGTE-IVRWVKKFPFPLSDREYVIARRLWESDDR 127 (209)
T ss_pred EEEEEEEEcCCCHHHHHHHHc-ChhhHhhhhhh-eeeEEEEEecCCCCcE-EEEEEEECCCcCCCceEEEEEEEEEcCCC
Confidence 46666777 679999999999 88888999996 667777765411 122 223333210 11123333322233 33
Q ss_pred ccEEEEEEEeccc-cC----CeEEEEEEEEEecC--CCCCCcEEEEEEEEEEcCCCCCC-chhH--HHHHHHHHHHHHHH
Q 041437 81 NYITNYKVIEGNL-LE----LYKSFCSTVKVTPK--ENDDGSLVHWIFEYEKLNEDVPD-PTGK--LQMVIDVAKDIDAH 150 (156)
Q Consensus 81 ~~~~~y~iieg~~-~~----~~~~y~~t~~v~p~--~~g~gs~v~W~~~~e~~~~~~~~-~~~~--~~~~~~~~k~ie~~ 150 (156)
...+...-+.-+. +. .+..|.+.+.+.|. +++ +|.+.++..-+|.+. +|. .... ....-.+++.|.+.
T Consensus 128 ~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~-~t~~~~~~~~dp~G~-IP~wlvN~~~~~~~~~~l~~l~~a 205 (209)
T cd08870 128 SYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQ-GSACEVTYFHNPDGG-IPRELAKLAVKRGMPGFLKKLENA 205 (209)
T ss_pred EEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCC-ceEEEEEEEECCCCC-CCHHHHHHHHHhhhHHHHHHHHHH
Confidence 3333333333221 11 36788999999998 555 788888887776444 332 1111 23334667777665
Q ss_pred Hh
Q 041437 151 LL 152 (156)
Q Consensus 151 l~ 152 (156)
+.
T Consensus 206 ~~ 207 (209)
T cd08870 206 LR 207 (209)
T ss_pred Hh
Confidence 53
No 57
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=95.86 E-value=0.58 Score=35.84 Aligned_cols=140 Identities=8% Similarity=0.051 Sum_probs=76.9
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCCcc--cccCCCceeeEEEecCCCCCCccEEEEEEec--CC---CcceEEEEE-EEeeC
Q 041437 8 VETVVEVKAPAAKFHQVFSCKPHVA--ASMSPQSIQGCDLLEGEWGKPGCIICWRYFH--DG---SPQIAKEIM-EVIDN 79 (156)
Q Consensus 8 v~~~~~i~apadkvW~~~~~d~~~~--p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~--~g---~~~~~kErl-~~~D~ 79 (156)
+..+..++++++++++++. |..+. ++|-+. +.+++++|--+....-++. .... .+ +...+--|. ...++
T Consensus 48 ~k~e~~i~~s~~~~~~~l~-d~~~~~r~~W~~~-~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d 124 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLK-PAAGGLRVKWDQN-VKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYED 124 (208)
T ss_pred EEEEEEecCCHHHHHHHHH-hccchhhhhhhhc-cccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCC
Confidence 6688899999999999998 55433 899995 8888888742122222222 2221 11 112222221 22333
Q ss_pred CccEEEEEEEecccc---CCe-EE----EEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCCc--hhH-HHHHHHHHHHHH
Q 041437 80 ENYITNYKVIEGNLL---ELY-KS----FCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDP--TGK-LQMVIDVAKDID 148 (156)
Q Consensus 80 ~~~~~~y~iieg~~~---~~~-~~----y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~~--~~~-~~~~~~~~k~ie 148 (156)
....+.+..++-+.. .++ .. +...++..|.+++ +|.++|.+..++.+. .|.. ..+ .+.....++.|.
T Consensus 125 ~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~-~t~v~~~~~~DpkG~-iP~~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 125 GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPD-KTQLVSFFQTDLSGY-LPQTVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCC-ceEEEEEEEeccCCC-cCHHHHHHHhhHHHHHHHHHHH
Confidence 334445544554322 122 11 2344555555554 899999999998755 4321 121 234446677777
Q ss_pred HHHh
Q 041437 149 AHLL 152 (156)
Q Consensus 149 ~~l~ 152 (156)
+++.
T Consensus 203 ~~~~ 206 (208)
T cd08903 203 KAVK 206 (208)
T ss_pred HHHh
Confidence 6663
No 58
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=95.72 E-value=0.68 Score=35.59 Aligned_cols=117 Identities=9% Similarity=0.028 Sum_probs=67.7
Q ss_pred EEEEEEe-CCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecC---CCcceEEEEEEEeeCCccE
Q 041437 8 VETVVEV-KAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHD---GSPQIAKEIMEVIDNENYI 83 (156)
Q Consensus 8 v~~~~~i-~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~---g~~~~~kErl~~~D~~~~~ 83 (156)
+..+..+ ++|++.+++++. |....++|-+. +..++.++--+ .--.|-++.+..- .....+--|....++....
T Consensus 49 ~k~~~~~~~~s~e~~~~~l~-D~~~r~~Wd~~-~~e~~~ie~~d-~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~v 125 (222)
T cd08871 49 IKVSAIFPDVPAETLYDVLH-DPEYRKTWDSN-MIESFDICQLN-PNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYI 125 (222)
T ss_pred EEEEEEeCCCCHHHHHHHHH-Chhhhhhhhhh-hceeEEEEEcC-CCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEE
Confidence 4455555 699999999999 88888999996 66777766421 1123444444321 1122333332222332222
Q ss_pred EEEEEEecc-cc--CC---eEEEEEEEEEecCCCCCCcEEEEEEEEEEcCC
Q 041437 84 TNYKVIEGN-LL--EL---YKSFCSTVKVTPKENDDGSLVHWIFEYEKLNE 128 (156)
Q Consensus 84 ~~y~iieg~-~~--~~---~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~ 128 (156)
+...-++-+ .+ .+ ...+.+-+.+.|.+++ +|.+.|.+..++.+.
T Consensus 126 i~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~-~t~vt~~~~~Dp~G~ 175 (222)
T cd08871 126 IFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPK-GCTLTYVTQNDPKGS 175 (222)
T ss_pred EEeccccCCCCCCCCCeEEeEEEccEEEEEECCCC-CEEEEEEEecCCCCC
Confidence 222222222 11 12 2456677888898766 899999998888775
No 59
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=95.67 E-value=0.7 Score=35.34 Aligned_cols=142 Identities=13% Similarity=0.113 Sum_probs=79.3
Q ss_pred EEEEEEEe-CCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecC---CCcceEEEEEEEeeCCcc
Q 041437 7 KVETVVEV-KAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHD---GSPQIAKEIMEVIDNENY 82 (156)
Q Consensus 7 ~v~~~~~i-~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~---g~~~~~kErl~~~D~~~~ 82 (156)
.+..+..+ ++|++.+.+++. |.+..++|.+. +.++++++-+....--+-++....- .....+-.|-...|+++.
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~-D~~~r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~ 123 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQL-DLEYRKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENK 123 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHh-CHHHHHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCC
Confidence 35555556 999999999999 88889999996 7778888753111112233333211 111344444445665554
Q ss_pred E--EEEEEEec-ccc--C---CeEEEEEEEEEecCC---CCCCcEEEEEEEEEEcCCCCCC-chhH--HHHHHHHHHHHH
Q 041437 83 I--TNYKVIEG-NLL--E---LYKSFCSTVKVTPKE---NDDGSLVHWIFEYEKLNEDVPD-PTGK--LQMVIDVAKDID 148 (156)
Q Consensus 83 ~--~~y~iieg-~~~--~---~~~~y~~t~~v~p~~---~g~gs~v~W~~~~e~~~~~~~~-~~~~--~~~~~~~~k~ie 148 (156)
. +...-++. ..+ . ...+|.+.+.+.|.+ ++ ||.+.++..-+|.+. +|. .... .....++++.|.
T Consensus 124 ~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~-~~~~~~~~~~dPgG~-IP~~lvN~~~~~~~~~~l~~l~ 201 (207)
T cd08911 124 LIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEP-GFEFVLTYFDNPGVN-IPSYITSWVAMSGMPDFLERLR 201 (207)
T ss_pred EEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCC-CeEEEEEEEeCCCCc-cCHHHHHHHHHhhccHHHHHHH
Confidence 3 22222222 111 1 457889999999874 34 788876665443332 332 2211 133346667666
Q ss_pred HHHh
Q 041437 149 AHLL 152 (156)
Q Consensus 149 ~~l~ 152 (156)
+.++
T Consensus 202 ~a~~ 205 (207)
T cd08911 202 NAAL 205 (207)
T ss_pred HHHh
Confidence 6554
No 60
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.18 E-value=0.85 Score=33.37 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=63.7
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCCccc---ccCCC---ceeeEEEecCCCCCCccEEEEE-EecC----------CCcceE
Q 041437 8 VETVVEVKAPAAKFHQVFSCKPHVAA---SMSPQ---SIQGCDLLEGEWGKPGCIICWR-YFHD----------GSPQIA 70 (156)
Q Consensus 8 v~~~~~i~apadkvW~~~~~d~~~~p---~~~p~---~i~s~~~~eGd~~~~GsvR~~~-~~~~----------g~~~~~ 70 (156)
+++++++++|+|+||+++. |..-+. +-+.. -+.+++ ++|+ + -+++.-. ...+ +....+
T Consensus 1 f~~~~~~~~~~~~v~~~~~-d~~y~~~r~~~~g~~~~~~~~~~-~~~~--g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v 75 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFT-DEDYWEARCAALGADNAEVESFE-VDGD--G-VRVTVRQTVPADKLPSAARKFVGGDLRV 75 (159)
T ss_pred CeEEEEcCCCHHHHHHHHc-CHHHHHHHHHHcCCCCceEEEEE-EcCC--e-EEEEEEEecChhhCCHHHHHhcCCCeEE
Confidence 3678899999999999999 543222 12221 233433 2343 2 1121111 1110 111122
Q ss_pred E--EEEEEeeCCccEEEEEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCC
Q 041437 71 K--EIMEVIDNENYITNYKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNED 129 (156)
Q Consensus 71 k--Erl~~~D~~~~~~~y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~ 129 (156)
+ |+-...++..++.+|++--.+. --+..+++++.|.+ +||.+.++.+++..-+.
T Consensus 76 ~~~e~w~~~~~g~~~g~~~~~~~G~---P~~~~G~~~L~~~~--~gt~~~~~g~v~v~VPl 131 (159)
T PF10698_consen 76 TRTETWTPLDDGRRTGTFTVSIPGA---PVSISGTMRLRPDG--GGTRLTVEGEVKVKVPL 131 (159)
T ss_pred EEEEEEecCCCCeEEEEEEEEecCc---eEEEEEEEEEecCC--CCEEEEEEEEEEEEEcc
Confidence 2 2222236677777887664333 25778999999953 37999999999877543
No 61
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=93.98 E-value=2.3 Score=33.37 Aligned_cols=142 Identities=11% Similarity=0.046 Sum_probs=76.9
Q ss_pred EEEEEEEeC-CCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecC---CCcceE-EEEEEEeeCCc
Q 041437 7 KVETVVEVK-APAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHD---GSPQIA-KEIMEVIDNEN 81 (156)
Q Consensus 7 ~v~~~~~i~-apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~---g~~~~~-kErl~~~D~~~ 81 (156)
.+.....++ ++++.+.+++. |.....+|... +.+.++++-.... -.|-+..++.- .....+ .-.+...++..
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l~-D~~~r~~Wd~~-~~~~~vie~l~~~-~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~ 129 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYFF-DPDVRMDWETT-LENFHVVETLSQD-TLIFHQTHKRVWPAAQRDALFVSHIRKIPALE 129 (235)
T ss_pred eEEEEEEECCCCHHHHHHHHh-ChhhHHHHHhh-hheeEEEEecCCC-CEEEEEEccCCCCCCCcEEEEEEEEEecCccc
Confidence 356677777 99999999999 88889999995 8888877642111 11222222210 001121 22222233211
Q ss_pred --------cEEEEEEEeccccCCeEEEEEE-----------------EEEecCCCCCCcEEEEEEEEEEcCCCCCC-chh
Q 041437 82 --------YITNYKVIEGNLLELYKSFCST-----------------VKVTPKENDDGSLVHWIFEYEKLNEDVPD-PTG 135 (156)
Q Consensus 82 --------~~~~y~iieg~~~~~~~~y~~t-----------------~~v~p~~~g~gs~v~W~~~~e~~~~~~~~-~~~ 135 (156)
-.+.+++.-...+..-...++. +.++| +++ +|.+.+.+..+|.+. +|. ...
T Consensus 130 ~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~-~~~ity~~~~dPgG~-iP~wvvn 206 (235)
T cd08872 130 EPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNI-LCKITYVANVNPGGW-APASVLR 206 (235)
T ss_pred cccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCC-eEEEEEEEEeCCCCC-ccHHHHH
Confidence 2233333332222111112222 22334 344 799999998888766 332 222
Q ss_pred H--HHHHHHHHHHHHHHHhcC
Q 041437 136 K--LQMVIDVAKDIDAHLLSQ 154 (156)
Q Consensus 136 ~--~~~~~~~~k~ie~~l~~~ 154 (156)
. +..+-++++.+..|++.+
T Consensus 207 ~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 207 AVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred HHHHhhchHHHHHHHHHHHHh
Confidence 2 345568999999999864
No 62
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=93.51 E-value=2.5 Score=31.99 Aligned_cols=141 Identities=11% Similarity=0.043 Sum_probs=77.9
Q ss_pred EEEEEEEeCCCHHHHHHHHhcC--CCcccccCCCceeeEEEecCCCCCCccEEEEEEec--CC--C-cceE-EEEEEEee
Q 041437 7 KVETVVEVKAPAAKFHQVFSCK--PHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFH--DG--S-PQIA-KEIMEVID 78 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d--~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~--~g--~-~~~~-kErl~~~D 78 (156)
.+..+..++++++++.+.+. + ....++|-+. +.++++++.-+ ..-.+-+..++. .+ . ..++ .......+
T Consensus 47 ~~k~~~~i~~~~~~v~~~l~-d~~~~~r~~Wd~~-~~~~~~le~id-~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~ 123 (206)
T cd08867 47 LYRAEGIVDALPEKVIDVII-PPCGGLRLKWDKS-LKHYEVLEKIS-EDLCVGRTITPSAAMGLISPRDFVDLVYVKRYE 123 (206)
T ss_pred EEEEEEEEcCCHHHHHHHHH-hcCcccccccccc-ccceEEEEEeC-CCeEEEEEEccccccCccCCcceEEEEEEEEeC
Confidence 47788999999999999999 5 5567999986 88888887531 111222222211 01 0 1122 12112233
Q ss_pred CCccEEEEEEEeccccC---Ce---EEEEEEEEEecCCC-CCCcEEEEEEEEEEcCCCCCC-ch-hH-HHHHHHHHHHHH
Q 041437 79 NENYITNYKVIEGNLLE---LY---KSFCSTVKVTPKEN-DDGSLVHWIFEYEKLNEDVPD-PT-GK-LQMVIDVAKDID 148 (156)
Q Consensus 79 ~~~~~~~y~iieg~~~~---~~---~~y~~t~~v~p~~~-g~gs~v~W~~~~e~~~~~~~~-~~-~~-~~~~~~~~k~ie 148 (156)
+....+...-++-+..+ ++ ..+.+-+-+.|.++ .++|.+.|.+..++.+. +|. .. .. .+.....++.|.
T Consensus 124 ~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~-iP~~lvn~~~~~~~~~~~~~lr 202 (206)
T cd08867 124 DNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGM-IPQSLVESAMPSNLVNFYTDLV 202 (206)
T ss_pred CCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCC-CcHHHHHhhhhhhHHHHHHHHH
Confidence 32333444444333222 21 33344455666542 23799999999999866 332 11 11 234456777777
Q ss_pred HHH
Q 041437 149 AHL 151 (156)
Q Consensus 149 ~~l 151 (156)
+|+
T Consensus 203 ~~~ 205 (206)
T cd08867 203 KGV 205 (206)
T ss_pred Hhc
Confidence 765
No 63
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=93.48 E-value=2.4 Score=31.69 Aligned_cols=143 Identities=13% Similarity=0.046 Sum_probs=82.9
Q ss_pred eEEEEEEEeCCCHHHHHH-HHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCC-C---cceEEEEE-EEeeC
Q 041437 6 NKVETVVEVKAPAAKFHQ-VFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDG-S---PQIAKEIM-EVIDN 79 (156)
Q Consensus 6 ~~v~~~~~i~apadkvW~-~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g-~---~~~~kErl-~~~D~ 79 (156)
..+..+..++++++++.. ++. |....++|.+. +.++++++-...+ ..|.++....-- + ..++--|- ....+
T Consensus 45 ~~~k~~~~v~~~~~~~~~~~~~-d~~~r~~Wd~~-~~~~~~ie~~~~~-~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~ 121 (206)
T smart00234 45 EASRAVGVVPMVCADLVEELMD-DLRYRPEWDKN-VAKAETLEVIDNG-TVIYHYVSKFVAGPVSPRDFVFVRYWRELVD 121 (206)
T ss_pred EEEEEEEEEecChHHHHHHHHh-cccchhhCchh-cccEEEEEEECCC-CeEEEEEEecccCcCCCCeEEEEEEEEEcCC
Confidence 456677888999998554 555 88888999996 7788887642112 355555443211 1 12222221 12223
Q ss_pred CccEEEEEEEecccc---C---CeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCC-ch-h-HHHHHHHHHHHHHHH
Q 041437 80 ENYITNYKVIEGNLL---E---LYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPD-PT-G-KLQMVIDVAKDIDAH 150 (156)
Q Consensus 80 ~~~~~~y~iieg~~~---~---~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~-~~-~-~~~~~~~~~k~ie~~ 150 (156)
....+..+-++.+-. . ....+.+-+.+.|.+++ .|.+.|....++.+. .|. .. . .......+++.+.++
T Consensus 122 ~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~-~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~~~~~~ 199 (206)
T smart00234 122 GSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNG-PSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAKTWVAT 199 (206)
T ss_pred CcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCC-CeEEEEEEEEecCCC-ccceeehhhhhhhHHHHHHHHHHH
Confidence 333444433333311 1 22567788899998877 799999999998876 332 21 1 124444666666666
Q ss_pred Hhc
Q 041437 151 LLS 153 (156)
Q Consensus 151 l~~ 153 (156)
|..
T Consensus 200 ~~~ 202 (206)
T smart00234 200 LQK 202 (206)
T ss_pred HHH
Confidence 543
No 64
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=91.53 E-value=5 Score=30.64 Aligned_cols=137 Identities=11% Similarity=0.068 Sum_probs=76.5
Q ss_pred EEEEEEEeC-CCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecC---CCcceE--EEEEEEeeCC
Q 041437 7 KVETVVEVK-APAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHD---GSPQIA--KEIMEVIDNE 80 (156)
Q Consensus 7 ~v~~~~~i~-apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~---g~~~~~--kErl~~~D~~ 80 (156)
.+..+..+. ++++.+.+++. |.+..++|.+.+. ++.-.+.+ + -.|-++.++.- .....+ +.+ ...|..
T Consensus 50 ~~k~~~~~~~~s~~~~~~~l~-D~~~r~~Wd~~~~-~~~~~~~~-~--~~i~y~~~k~PwPvs~RD~V~~r~~-~~~~~~ 123 (207)
T cd08910 50 EYKVFGVLEDCSPSLLADVYM-DLEYRKQWDQYVK-ELYEKECD-G--ETVIYWEVKYPFPLSNRDYVYIRQR-RDLDVE 123 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHh-CHHHHHHHHHHHH-hheeecCC-C--CEEEEEEEEcCCCCCCceEEEEEEe-ccccCC
Confidence 455667777 79999999999 8888899999744 43212222 1 12334444211 001122 222 234444
Q ss_pred ccEEEE---EEEeccc-c--C---CeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCC-chhH--HHHHHHHHHHHH
Q 041437 81 NYITNY---KVIEGNL-L--E---LYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPD-PTGK--LQMVIDVAKDID 148 (156)
Q Consensus 81 ~~~~~y---~iieg~~-~--~---~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~-~~~~--~~~~~~~~k~ie 148 (156)
+..+.. ..++-+. + . ....|.+.+.+.|.+++ +|.+.+....+|.+. +|. .... ......+++.|.
T Consensus 124 ~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~-~t~i~~~~~~DPgG~-IP~wlvN~~~~~~~~~~l~~l~ 201 (207)
T cd08910 124 GRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKK-GSKVFMYYFDNPGGM-IPSWLINWAAKNGVPNFLKDMQ 201 (207)
T ss_pred CCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCC-ceEEEEEEEeCCCCc-chHHHHHHHHHHhhHHHHHHHH
Confidence 432211 2222221 1 1 45789999999998766 899988888877544 332 2211 233446677766
Q ss_pred HHH
Q 041437 149 AHL 151 (156)
Q Consensus 149 ~~l 151 (156)
+..
T Consensus 202 ka~ 204 (207)
T cd08910 202 KAC 204 (207)
T ss_pred HHH
Confidence 654
No 65
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=90.50 E-value=6.2 Score=29.84 Aligned_cols=116 Identities=11% Similarity=-0.031 Sum_probs=69.5
Q ss_pred EEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEec---CCCcceEEEEEEEeeCCc--
Q 041437 7 KVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFH---DGSPQIAKEIMEVIDNEN-- 81 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~---~g~~~~~kErl~~~D~~~-- 81 (156)
.+..+..|+++++++++.+. +. -++|.+. +.++++++--+.. =.|-+..+.. -....++--|.-..+.++
T Consensus 45 ~~K~~~~v~a~~~~v~~~l~-d~--r~~Wd~~-~~~~~vie~id~~-~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~ 119 (197)
T cd08869 45 LWRASTEVEAPPEEVLQRIL-RE--RHLWDDD-LLQWKVVETLDED-TEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGA 119 (197)
T ss_pred EEEEEEEeCCCHHHHHHHHH-HH--Hhccchh-hheEEEEEEecCC-cEEEEEEeeCCCCCCCceEEEEEEEEecCCCCc
Confidence 45788999999999999888 54 3899996 7788887632111 1222222221 111223333332333333
Q ss_pred cEEEEEEEec--cccCC---eEEEEEEEEEecCCCCCCcEEEEEEEEEEcCC
Q 041437 82 YITNYKVIEG--NLLEL---YKSFCSTVKVTPKENDDGSLVHWIFEYEKLNE 128 (156)
Q Consensus 82 ~~~~y~iieg--~~~~~---~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~ 128 (156)
..+.++=++- ..+.+ ...+.+-+.++|.+++ +|.+.|.+..+|.+.
T Consensus 120 ~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~-~t~vty~~~~Dp~G~ 170 (197)
T cd08869 120 CVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSG-KSRVTHICRVDLRGR 170 (197)
T ss_pred EEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCC-CeEEEEEEEECCCCC
Confidence 3333333421 11112 3556788889998776 899999999998866
No 66
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=83.18 E-value=16 Score=27.01 Aligned_cols=142 Identities=10% Similarity=-0.005 Sum_probs=84.9
Q ss_pred eEEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCC--Cc---ceEEEEEEE-eeC
Q 041437 6 NKVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDG--SP---QIAKEIMEV-IDN 79 (156)
Q Consensus 6 ~~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g--~~---~~~kErl~~-~D~ 79 (156)
..+.....++++++++...+.++. . .|-+. +.++++++--. ....|.++.+..-. +. .++--|... ..+
T Consensus 46 ~~~k~~~~v~~~~~~~~~~~~~~~-~--~Wd~~-~~~~~~le~~~-~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~ 120 (206)
T PF01852_consen 46 KMFKAEGVVPASPEQVVEDLLDDR-E--QWDKM-CVEAEVLEQID-EDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDED 120 (206)
T ss_dssp EEEEEEEEESSCHHHHHHHHHCGG-G--HHSTT-EEEEEEEEEEE-TTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTT
T ss_pred eEEEEEEEEcCChHHHHHHHHhhH-h--hcccc-hhhheeeeecC-CCCeEEEEEecccCCCCCCCcEEEEEEEEEEecc
Confidence 456778899999999998888433 2 99995 87888887421 22566666655322 31 122112222 244
Q ss_pred CccEEEEEEEeccccC-------CeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCCCC-ch-hH-HHHHHHHHHHHHH
Q 041437 80 ENYITNYKVIEGNLLE-------LYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDVPD-PT-GK-LQMVIDVAKDIDA 149 (156)
Q Consensus 80 ~~~~~~y~iieg~~~~-------~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~~~-~~-~~-~~~~~~~~k~ie~ 149 (156)
....+..+=++.+..+ ....+.+.+.+.|.+++ .|.|.+....++.+. +|. .. .+ ......+++.+-+
T Consensus 121 ~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~-~~~vt~~~~~D~~G~-iP~~~~n~~~~~~~~~~~~~~~~ 198 (206)
T PF01852_consen 121 GTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDG-RTRVTYVSQVDPKGW-IPSWLVNMVVKSQPPNFLKNLRK 198 (206)
T ss_dssp SEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTC-EEEEEEEEEEESSSS-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCC-CceEEEEEEECCCCC-ChHHHHHHHHHHhHHHHHHHHHH
Confidence 4455555445444221 22567788889999876 699999988887765 221 11 11 2333466677776
Q ss_pred HHhcC
Q 041437 150 HLLSQ 154 (156)
Q Consensus 150 ~l~~~ 154 (156)
+|.++
T Consensus 199 ~~~~~ 203 (206)
T PF01852_consen 199 ALKKQ 203 (206)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 66654
No 67
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=82.26 E-value=9.7 Score=29.55 Aligned_cols=108 Identities=7% Similarity=-0.001 Sum_probs=67.1
Q ss_pred EEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEEEEEec
Q 041437 12 VEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKVIEG 91 (156)
Q Consensus 12 ~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg 91 (156)
.-++.+++.+|++++ +.....++.| .-+...+++-+. +-+.+-.+..+--+-.+...-++. .++..++.+- .-+|
T Consensus 74 rligysp~~my~vVS-~V~~Y~~FVP-wC~kS~V~~~~P-~~~~kA~LeVGFk~l~E~y~S~Vt-~~~p~l~kt~-~~d~ 148 (227)
T KOG3177|consen 74 RLIGYSPSEMYSVVS-NVSEYHEFVP-WCKKSDVTSRRP-SGPLKADLEVGFKPLDERYTSNVT-CVKPHLTKTV-CADG 148 (227)
T ss_pred hhhCCCHHHHHHHHH-hHHHhhcccc-ceeccceeecCC-CCCceeeEEecCcccchhheeeeE-EecccceEEe-eccc
Confidence 347899999999999 8888888888 466666655431 223444444421111234455543 4444444433 2344
Q ss_pred cccCCeEEEEEEEEEecCC--CCCCcEEEEEEEEEEcCC
Q 041437 92 NLLELYKSFCSTVKVTPKE--NDDGSLVHWIFEYEKLNE 128 (156)
Q Consensus 92 ~~~~~~~~y~~t~~v~p~~--~g~gs~v~W~~~~e~~~~ 128 (156)
.+ +......|++.|.. .+ .|.+...++|+-..-
T Consensus 149 rL---F~~L~t~Wsf~pg~~~p~-tc~ldf~v~FeF~S~ 183 (227)
T KOG3177|consen 149 RL---FNHLITIWSFKPGPNIPR-TCTLDFSVSFEFKSL 183 (227)
T ss_pred cH---HHhhhheeeeccCCCCCC-eEEEEEEEEEEehhH
Confidence 43 34456788998876 33 799999999987643
No 68
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=72.39 E-value=42 Score=25.77 Aligned_cols=117 Identities=9% Similarity=-0.037 Sum_probs=67.1
Q ss_pred eEEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEe---cCCCcceEEEEEEEeeCCcc
Q 041437 6 NKVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYF---HDGSPQIAKEIMEVIDNENY 82 (156)
Q Consensus 6 ~~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~---~~g~~~~~kErl~~~D~~~~ 82 (156)
..+..+++++++++++.+.+- |. .++|.+. +.+.++++--+..- -|-+..+. +-.....+.-|.-..|..+.
T Consensus 52 ~~~r~~~~i~a~~~~vl~~ll-d~--~~~Wd~~-~~e~~vIe~ld~~~-~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g 126 (204)
T cd08908 52 RLWRTTIEVPAAPEEILKRLL-KE--QHLWDVD-LLDSKVIEILDSQT-EIYQYVQNSMAPHPARDYVVLRTWRTNLPKG 126 (204)
T ss_pred EEEEEEEEeCCCHHHHHHHHH-hh--HHHHHHH-hhheEeeEecCCCc-eEEEEEccCCCCCCCcEEEEEEEEEEeCCCC
Confidence 457788999999999999998 44 6899996 55656665321111 11111111 11112233333332333333
Q ss_pred EEEEEEE--ecc-ccC---CeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCC
Q 041437 83 ITNYKVI--EGN-LLE---LYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNE 128 (156)
Q Consensus 83 ~~~y~ii--eg~-~~~---~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~ 128 (156)
.+.-... +-+ ++. ....+.+.+.++|.++| +|.+.+.+..+|.+.
T Consensus 127 ~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g-~t~vtyi~~~DPgG~ 177 (204)
T cd08908 127 ACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSG-KSKLTYMCRIDLRGH 177 (204)
T ss_pred eEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCC-cEEEEEEEEeCCCCC
Confidence 3221211 111 111 23556788889999877 899999999888766
No 69
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=69.52 E-value=48 Score=25.35 Aligned_cols=118 Identities=11% Similarity=-0.029 Sum_probs=69.4
Q ss_pred EEEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecC-CCCCCccEEEEEEec-CCC----cceEEEEEE-EeeC
Q 041437 7 KVETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEG-EWGKPGCIICWRYFH-DGS----PQIAKEIME-VIDN 79 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eG-d~~~~GsvR~~~~~~-~g~----~~~~kErl~-~~D~ 79 (156)
-+..+..++++++++|+.+. +.....+|-+ .+.+++++|- |.. =.|-+....+ .+. ..++--|.- -+++
T Consensus 47 l~k~egvi~~~~e~v~~~l~-~~e~r~~Wd~-~~~~~~iie~Id~~--T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~ 122 (204)
T cd08904 47 LYRVEGIIPESPAKLIQFMY-QPEHRIKWDK-SLQVYKMLQRIDSD--TFICHTITQSFAMGSISPRDFVDLVHIKRYEG 122 (204)
T ss_pred EEEEEEEecCCHHHHHHHHh-ccchhhhhcc-cccceeeEEEeCCC--cEEEEEecccccCCcccCceEEEEEEEEEeCC
Confidence 45678889999999999999 6666789999 4888888863 211 1233322221 111 122222211 1345
Q ss_pred CccEEEEEEEeccccCCe------EEEEEEEEEecCCCC-CCcEEEEEEEEEEcCC
Q 041437 80 ENYITNYKVIEGNLLELY------KSFCSTVKVTPKEND-DGSLVHWIFEYEKLNE 128 (156)
Q Consensus 80 ~~~~~~y~iieg~~~~~~------~~y~~t~~v~p~~~g-~gs~v~W~~~~e~~~~ 128 (156)
....+.+.-++-+-.++- .++.+=+-+.|.+++ ++|.+.|-+..++.+.
T Consensus 123 ~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 123 NMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred CEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 455555555665532222 233344566776543 3699999999888755
No 70
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=66.45 E-value=58 Score=25.10 Aligned_cols=118 Identities=6% Similarity=-0.069 Sum_probs=63.6
Q ss_pred EEEEEEeCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccE-EEEEEecCCC----cceEEEEEEEeeCCcc
Q 041437 8 VETVVEVKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCI-ICWRYFHDGS----PQIAKEIMEVIDNENY 82 (156)
Q Consensus 8 v~~~~~i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~Gsv-R~~~~~~~g~----~~~~kErl~~~D~~~~ 82 (156)
+..|..|+..++++|..+. +.....+|=|. +++|+++|--+ .-=+| |..+....+. ..++-=+.......++
T Consensus 49 ~R~Egvv~~~~~ev~d~v~-~~~~r~~Wd~~-v~~~~Iie~Id-~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~ 125 (202)
T cd08902 49 YKAQGVVEDVYNRIVDHIR-PGPYRLDWDSL-MTSMDIIEEFE-ENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL 125 (202)
T ss_pred EEEEEEecCCHHHHHHHHh-cccchhcccch-hhheeHhhhhc-CCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCe
Confidence 4566777899999999998 66567799995 99999988420 11223 3444332221 1122111111112222
Q ss_pred -EEEEEEEeccccCCe---EEEEEEEEEecCCCC-CCcEEEEEEEEEEcCC
Q 041437 83 -ITNYKVIEGNLLELY---KSFCSTVKVTPKEND-DGSLVHWIFEYEKLNE 128 (156)
Q Consensus 83 -~~~y~iieg~~~~~~---~~y~~t~~v~p~~~g-~gs~v~W~~~~e~~~~ 128 (156)
++.-++.-.+..+++ .++-+-+-+.|.+++ +.|.+.|-+..+..+.
T Consensus 126 ~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~ 176 (202)
T cd08902 126 LSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM 176 (202)
T ss_pred EEEEeeecCCCCCCCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC
Confidence 222222222221111 122233456676655 4789999999887755
No 71
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=65.37 E-value=49 Score=23.88 Aligned_cols=99 Identities=17% Similarity=0.237 Sum_probs=51.4
Q ss_pred EEEEEEEeCCCHHHHHHHHhcCCC-cccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEE
Q 041437 7 KVETVVEVKAPAAKFHQVFSCKPH-VAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITN 85 (156)
Q Consensus 7 ~v~~~~~i~apadkvW~~~~~d~~-~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~ 85 (156)
+++.++..+.+.+.+-.+++ |+. .+|+++|. ++++. ++++ .-.+...-++-...++=++ -+...+=+|.
T Consensus 2 ~~~~~i~t~H~~e~v~~ILS-DP~F~lp~l~p~-ik~v~-~~~~------sF~~~g~~~~~~~~~~G~v-y~s~~~ItYv 71 (136)
T PF11485_consen 2 EIEIEIKTSHDIEVVLTILS-DPEFVLPRLFPP-IKSVK-VEEN------SFRAEGKFGGFPFEMKGNV-YVSSNEITYV 71 (136)
T ss_dssp -EEEEEE-SS-HHHHHHHHT--HHHHHHHHSTT-EEEEE--STT------EEEEEEEETTEEEEEEEEE-EEETTEEEEE
T ss_pred eEEEEeccCCChHheEEEec-CCccEecccCCc-eEEEE-ecCC------EEEEEEEEeeEEEEEEEEE-EEccceEEEE
Confidence 46788889999999999999 777 79999994 99988 4443 0111111122122233332 2333455556
Q ss_pred EEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEE
Q 041437 86 YKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYE 124 (156)
Q Consensus 86 y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e 124 (156)
|.+..|+. ..+-+-+++.. ...++..++|+
T Consensus 72 f~~~~g~~---~g~GkL~i~~~------~~~i~l~~eye 101 (136)
T PF11485_consen 72 FNLAGGGP---NGNGKLTIQLE------NGKIKLIFEYE 101 (136)
T ss_dssp EE----ET---TEEEEEEEEEE------TTEEEEEEEES
T ss_pred EEeeccCC---CCcEEEEEEec------CCEEEEEEEcc
Confidence 66666532 23333444442 12577777774
No 72
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=48.83 E-value=88 Score=21.66 Aligned_cols=101 Identities=13% Similarity=0.102 Sum_probs=56.7
Q ss_pred EEEEeCCCHHHHHHHHhcCCC-cccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEEEE
Q 041437 10 TVVEVKAPAAKFHQVFSCKPH-VAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKV 88 (156)
Q Consensus 10 ~~~~i~apadkvW~~~~~d~~-~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y~i 88 (156)
.+.++++||+.+|..+.+..- .+.+--...+..-++ +| .--.-++. .+ ...+=+|..+ ..++.+.+++
T Consensus 3 I~~~l~v~a~~ff~~l~~s~~~DI~~~tgk~~~~~~L-~G------~~Y~K~~~-~~--~~~~v~It~~-~~~~~Y~~~~ 71 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLIDSLLYDIKQATGKKLPVKQL-KG------FSYQKKFK-NK--REAKVKITEY-EPNKRYAATF 71 (120)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHcCCCCChhhc-CC------cEEEEEcC-CC--CEEEEEEEEE-cCCCEEEEEE
Confidence 456799999999999883211 121111110100011 22 12222222 22 1455556666 6677777777
Q ss_pred EeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcC
Q 041437 89 IEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLN 127 (156)
Q Consensus 89 ieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~ 127 (156)
.... ..+..+.++.|.++| .|.|..+=++++.+
T Consensus 72 ~s~~-----~~~~i~Y~i~~~~~~-~~~v~y~E~~~~~~ 104 (120)
T PF11687_consen 72 SSSR-----GTFTISYEIEPLDDG-SIEVTYEEEYESKG 104 (120)
T ss_pred EecC-----CCEEEEEEEEECCCC-cEEEEEEEEEccCC
Confidence 6432 346777888898876 79998887776543
No 73
>TIGR02777 LigD_PE_dom DNA ligase D, 3'-phosphoesterase domain. Most sequences in this family are the 3'-phosphoesterase domain of a multidomain, multifunctional DNA ligase, LigD, involved, along with bacterial Ku protein, in non-homologous end joining, the less common of two general mechanisms of repairing double-stranded breaks in DNA sequences. LigD is variable in architecture, as it lacks this domain in Bacillus subtilis, is permuted in Mycobacterium tuberculosis, and occasionally is encoded by tandem ORFs rather than as a multifuntional protein. In a few species (Dehalococcoides ethenogenes and the archaeal genus Methanosarcina), sequences corresponding to the ligase and polymerase domains of LigD are not found, and the role of this protein is unclear.
Probab=38.10 E-value=43 Score=24.71 Aligned_cols=59 Identities=20% Similarity=0.388 Sum_probs=29.9
Q ss_pred ccEEEEEEecCCCcceEEEEEEEeeCCccEEEEEEEeccccCCeEEEEEEEEEecCCC-CCCcEEEEE-EEEEEcC
Q 041437 54 GCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKVIEGNLLELYKSFCSTVKVTPKEN-DDGSLVHWI-FEYEKLN 127 (156)
Q Consensus 54 GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~y~~t~~v~p~~~-g~gs~v~W~-~~~e~~~ 127 (156)
|..+.|... -|++..-.++..++--+.|.+.|.-.||.+ |.++ |.|+++.|- ..|++..
T Consensus 50 GVL~SWAvP-kGPs~dp~~kRLAv~~EDHpl~Y~~FEG~I--------------P~g~YGaG~V~iWD~Gty~~~~ 110 (156)
T TIGR02777 50 GVLKSWAVP-KGPSLDPADKRLAVHVEDHPLDYADFEGTI--------------PKGEYGAGTVIVWDRGTWEPEG 110 (156)
T ss_pred CeEEEeEcC-cCCCCCcccceeeeEccCccchhccccccc--------------cCCccCCccEEEEeCceEEeCC
Confidence 455666655 333322233333454555555555555544 2221 237888885 4566654
No 74
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=32.06 E-value=2e+02 Score=20.88 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=28.3
Q ss_pred ccEEEEEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEE
Q 041437 81 NYITNYKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEK 125 (156)
Q Consensus 81 ~~~~~y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~ 125 (156)
.....|.+.-+-++..+..+...+++.|.+.+ .|.+.|..-+.+
T Consensus 81 ~~~~~~~iFPN~~i~~~~~~~~~~~~~P~~~~-~t~~~~~~~~~~ 124 (190)
T cd08885 81 RRLVLFAIFPTHLLALTPDYVWWLSLLPEGAG-RVRVRWGVLVAP 124 (190)
T ss_pred cceEEEEECCcEEEEecCCeEEEEEEEecCCC-eEEEEEEEEEcc
Confidence 34555555554443334455678889998876 899888765543
No 75
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=27.68 E-value=2.8e+02 Score=21.19 Aligned_cols=104 Identities=13% Similarity=0.173 Sum_probs=50.1
Q ss_pred HHHHHhcCCC--cccccCCCcee--eEEEecCCCCCCc---cEEEEEEecCCC--cceEEEEEE-EeeCC--ccEEEEEE
Q 041437 21 FHQVFSCKPH--VAASMSPQSIQ--GCDLLEGEWGKPG---CIICWRYFHDGS--PQIAKEIME-VIDNE--NYITNYKV 88 (156)
Q Consensus 21 vW~~~~~d~~--~~p~~~p~~i~--s~~~~eGd~~~~G---svR~~~~~~~g~--~~~~kErl~-~~D~~--~~~~~y~i 88 (156)
+...++ +.| .=.+|+|+ +. +++.++..+++-| .|-++.+.-..+ ...+.+++. ..+.+ +..+..++
T Consensus 53 ~~~~l~-~~h~~~E~~~i~~-v~~~~~~~l~~~~~~~~~~~~v~~~~~~~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~ 130 (208)
T cd08864 53 FREGLR-DTHTEYEKEYVHE-IGAYDLEPVEVDGEGDGVVTYLVQLTYKFPFPLSPRVFNELVHIKSDLDPASEFMVVSL 130 (208)
T ss_pred HHhhhh-HhHHhhhhhchhh-hccceeEEeeecCCCccceEEEEEEEEECCCCCCCcEEEEEEEeeccCCCCCeEEEEEE
Confidence 334455 333 44689997 66 7777664321222 444454443222 345666655 44433 33343333
Q ss_pred Eec--ccc---CC-e--EEEEE-EEEEecCCCCCCcEEEEEEEEEEc
Q 041437 89 IEG--NLL---EL-Y--KSFCS-TVKVTPKENDDGSLVHWIFEYEKL 126 (156)
Q Consensus 89 ieg--~~~---~~-~--~~y~~-t~~v~p~~~g~gs~v~W~~~~e~~ 126 (156)
--- .+. .+ + ....+ .++..|.++++.+.++|+..-...
T Consensus 131 p~~~~~~p~~~~~~Vr~~y~SgE~~~~~p~~~~~~~~vew~maT~sD 177 (208)
T cd08864 131 PITPPLVESLYENAVLGRYASVEKISYLPDADGKSNKVEWIMATRSD 177 (208)
T ss_pred EecCCcCCccCCCcEEEEEEEEEEEEEcCccCCCcCCEEEEEEEeeC
Confidence 322 221 11 1 22223 455567652226789999943333
No 76
>COG5569 Uncharacterized conserved protein [Function unknown]
Probab=26.65 E-value=46 Score=22.75 Aligned_cols=43 Identities=9% Similarity=0.085 Sum_probs=32.5
Q ss_pred CCccEEEEEEecCCCcceEEEEEEEeeCCccEEEEEEEeccccC
Q 041437 52 KPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKVIEGNLLE 95 (156)
Q Consensus 52 ~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~ 95 (156)
++|-||.+... .+++...+|-|.+++=..|+++|++-+-..+.
T Consensus 40 at~~VkkvD~~-akKVTl~He~i~~l~mp~MTM~F~Vkd~a~ls 82 (108)
T COG5569 40 ATGVVKKVDLE-AKKVTLHHEPIKNLNMPAMTMVFRVKDQAKLS 82 (108)
T ss_pred Cccceeeeccc-cceEEEeccchhhCCCcceEEEEEeccHHHhh
Confidence 34567877765 45555678889999999999999998866543
No 77
>PF11979 DUF3480: Domain of unknown function (DUF3480); InterPro: IPR022557 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 350 to 362 amino acids in length. This domain is found C-terminal to PF01363 from PFAM.
Probab=25.57 E-value=3.2e+02 Score=23.01 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=37.1
Q ss_pred EEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCCCC----CCchhHH----HHHHHHHHHHHHHHh
Q 041437 88 VIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNEDV----PDPTGKL----QMVIDVAKDIDAHLL 152 (156)
Q Consensus 88 iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~~~----~~~~~~~----~~~~~~~k~ie~~l~ 152 (156)
-|+|-.+.++.+++..-...-.+ ++-.++||--|....+.. .++.+.- +.|.++..++..||.
T Consensus 238 pIDg~slegv~s~ri~~~~~~~~--~~~~IRwTeVF~l~~~~~~~~~~~~~~~~~laE~IA~a~c~AL~PhL~ 308 (356)
T PF11979_consen 238 PIDGKSLEGVPSVRIFQGSEYKA--NGKIIRWTEVFFLQKDDDSNGPSDPSDHSRLAEQIAKACCAALCPHLK 308 (356)
T ss_pred CCCCceecCceeeeecccceeec--CCeEEEEEEEEEEecCccccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444344555555433222222 368899999998877654 2344432 456677888888774
No 78
>PF08868 YugN: YugN-like family; InterPro: IPR014967 This entry contains proteins related to Bacillus subtilis YugN, they are functionally uncharacterised. ; PDB: 2R5X_A 2PWW_A.
Probab=25.55 E-value=69 Score=22.99 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=19.1
Q ss_pred EEcCCCCCCchhHHHHHHHHHHHHHHHHh
Q 041437 124 EKLNEDVPDPTGKLQMVIDVAKDIDAHLL 152 (156)
Q Consensus 124 e~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 152 (156)
+|.+.+..-|.++.+....+++.||..|.
T Consensus 104 eP~d~D~~~p~~~v~~~~~~l~ele~~L~ 132 (132)
T PF08868_consen 104 EPVDKDAEFPEKWVDKGEELLKELEDELK 132 (132)
T ss_dssp ----T-B-EEHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCcCCHHHHHHHHHHHHHHHHhhC
Confidence 34445555577889999999999999873
No 79
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=24.00 E-value=1.9e+02 Score=21.90 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=39.4
Q ss_pred eCCCHHHHHHHHhcCCCcccccCCCceeeEEEecCCCCCCccEEEEEEecCCCcceEEEEEEEeeCCccEEEEEEEeccc
Q 041437 14 VKAPAAKFHQVFSCKPHVAASMSPQSIQGCDLLEGEWGKPGCIICWRYFHDGSPQIAKEIMEVIDNENYITNYKVIEGNL 93 (156)
Q Consensus 14 i~apadkvW~~~~~d~~~~p~~~p~~i~s~~~~eGd~~~~GsvR~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~ 93 (156)
++.+..|+|. |.++.+.--|..| .+.+.... .. ....+++..++.-...=+-|-..|..+..|.|++-|-+.
T Consensus 3 ~~i~v~K~W~----d~~n~~~~RP~sI-~v~L~~ng--~~-~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V 74 (187)
T cd00222 3 VNLSGTKIWD----DYDDKFKKRPAKI-SVQLLANG--EK-YVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQV 74 (187)
T ss_pred EEEEEEEEEC----CCCCCCCCCCCEE-EEEEEeCC--ee-eeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecC
Confidence 4455667776 2223344455544 45555321 11 244455554442122234455667788999999999765
Q ss_pred c
Q 041437 94 L 94 (156)
Q Consensus 94 ~ 94 (156)
.
T Consensus 75 ~ 75 (187)
T cd00222 75 P 75 (187)
T ss_pred C
Confidence 3
No 80
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=22.72 E-value=1.7e+02 Score=27.12 Aligned_cols=64 Identities=23% Similarity=0.387 Sum_probs=44.5
Q ss_pred cEEEEEEecCCCcceEEEEEEEeeCCccEEEEEEEeccccCCeEEEEEEEEEec---------CCCCCCcEEEEEEEEEE
Q 041437 55 CIICWRYFHDGSPQIAKEIMEVIDNENYITNYKVIEGNLLELYKSFCSTVKVTP---------KENDDGSLVHWIFEYEK 125 (156)
Q Consensus 55 svR~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~y~~t~~v~p---------~~~g~gs~v~W~~~~e~ 125 (156)
||-.+.|++||. |-+++ ..+|.+-|-.-+|.++.+++..+-|+-..+ .|..++..+.|+-..|-
T Consensus 14 ci~d~afkPDGs-----qL~lA--Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGT-----QLILA--AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG 86 (1081)
T ss_pred chheeEECCCCc-----eEEEe--cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc
Confidence 788888999884 44443 668999999999998776666665553322 22224789999977654
No 81
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=21.91 E-value=2.1e+02 Score=17.72 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=32.4
Q ss_pred cccccCCCceeeEEEecCCCC-CCccEEEEEE-ecCCCcceEEEEEE-EeeCCccEEEEEEEecc
Q 041437 31 VAASMSPQSIQGCDLLEGEWG-KPGCIICWRY-FHDGSPQIAKEIME-VIDNENYITNYKVIEGN 92 (156)
Q Consensus 31 ~~p~~~p~~i~s~~~~eGd~~-~~GsvR~~~~-~~~g~~~~~kErl~-~~D~~~~~~~y~iieg~ 92 (156)
.+.-|.|. -++|.++-.+.+ .......++. ..+| .+.-.|. .+.+....+.|++...+
T Consensus 14 ~F~vwaP~-A~~V~l~~~~~~~~~~~~~~m~~~~~~G---~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 14 TFRVWAPN-AKSVELVLYFNGSWPAEEYPMTRKDDDG---VWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp EEEEE-TT-ESEEEEEEETTTSSEEEEEEEEEECTTT---EEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred EEEEECCC-CCEEEEEEEeeecCCCceEEeeecCCCC---EEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 46789996 889998643322 1122333432 2234 6666655 34333579999998765
No 82
>PF10651 DUF2479: Domain of unknown function (DUF2479); InterPro: IPR018913 This domain is found in phage from a number of different bacteria including (Listeria phage A118 (Bacteriophage A118)). It is thought to be a putative long tail fibre protein.; PDB: 4DIV_L 3UH8_A.
Probab=20.62 E-value=3.4e+02 Score=19.72 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=35.6
Q ss_pred ceEEEEEEEeeCCccEEEEEEEeccccCCeEEEEEEEEEecCCCCCCcEEEEEEEEEEcCC
Q 041437 68 QIAKEIMEVIDNENYITNYKVIEGNLLELYKSFCSTVKVTPKENDDGSLVHWIFEYEKLNE 128 (156)
Q Consensus 68 ~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~y~~t~~v~p~~~g~gs~v~W~~~~e~~~~ 128 (156)
....+-+.-+|+.+..++|.+.+.-+ ...-.+.+.+-+.-.+++ .+...-.+.|+-...
T Consensus 68 ~~~~~~~~i~d~~~G~i~y~lp~~~l-~~~G~v~a~~~i~~~~~~-~~~~t~~F~F~V~~s 126 (170)
T PF10651_consen 68 IFIQDDVEIVDPTNGIIQYTLPDEFL-KHVGKVKAQLFIYYNGDG-QSISTANFTFEVEDS 126 (170)
T ss_dssp SSEEEE-SEEETTTTEEEEE--TTTT-HSSEEEEEEEEEEEESSS-EEEE---EEEEEE--
T ss_pred EEEEecceEEcCcCcEEEEEECHHHh-ccCcEEEEEEEEEECCCC-CEEEEeeEEEEEecc
Confidence 46777788899999999999987754 345666777777654444 555555566666544
Done!