Query 041440
Match_columns 237
No_of_seqs 184 out of 789
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:05:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1.2E-36 2.5E-41 261.4 24.7 177 52-237 31-218 (219)
2 PF03168 LEA_2: Late embryogen 99.5 1.6E-13 3.4E-18 102.6 6.5 98 111-215 1-100 (101)
3 smart00769 WHy Water Stress an 98.3 4.3E-06 9.4E-11 63.1 9.3 60 104-165 13-73 (100)
4 COG5608 LEA14-like dessication 97.6 0.0037 7.9E-08 50.7 14.2 81 89-171 31-114 (161)
5 PF12751 Vac7: Vacuolar segreg 97.5 0.00036 7.9E-09 64.2 7.5 85 53-142 294-382 (387)
6 PF07092 DUF1356: Protein of u 97.3 0.007 1.5E-07 52.6 13.0 57 106-164 122-181 (238)
7 PLN03160 uncharacterized prote 96.0 0.094 2E-06 45.2 10.7 98 51-159 33-149 (219)
8 PF14155 DUF4307: Domain of un 89.0 2.3 4.9E-05 32.8 7.1 68 88-165 31-101 (112)
9 TIGR02588 conserved hypothetic 83.8 3 6.4E-05 32.8 5.3 52 68-119 9-62 (122)
10 TIGR03602 streptolysinS bacter 80.8 0.37 7.9E-06 31.7 -0.6 6 55-60 24-29 (56)
11 COG1580 FliL Flagellar basal b 75.3 6 0.00013 32.5 4.8 26 61-86 17-42 (159)
12 PRK05529 cell division protein 73.4 43 0.00092 29.4 10.1 25 109-134 111-135 (255)
13 PF09911 DUF2140: Uncharacteri 73.4 8.2 0.00018 32.4 5.3 25 67-91 7-31 (187)
14 PRK13150 cytochrome c-type bio 71.9 46 0.001 27.3 9.2 65 108-180 78-146 (159)
15 PRK07021 fliL flagellar basal 69.7 7.1 0.00015 31.8 4.0 17 123-140 78-94 (162)
16 PRK13183 psbN photosystem II r 69.2 6.7 0.00015 25.4 2.9 25 65-89 9-33 (46)
17 CHL00020 psbN photosystem II p 66.1 7.6 0.00016 24.8 2.7 24 65-88 6-29 (43)
18 PRK07718 fliL flagellar basal 65.1 10 0.00023 30.2 4.1 12 128-139 66-77 (142)
19 KOG3950 Gamma/delta sarcoglyca 64.4 69 0.0015 28.3 9.1 18 106-123 108-125 (292)
20 PF02468 PsbN: Photosystem II 61.8 6.3 0.00014 25.2 1.7 23 66-88 7-29 (43)
21 PHA03054 IMV membrane protein; 59.5 8 0.00017 27.4 2.1 25 60-84 45-69 (72)
22 PF09307 MHC2-interact: CLIP, 55.3 3.9 8.5E-05 31.7 0.0 35 52-87 23-57 (114)
23 PF09624 DUF2393: Protein of u 54.9 1E+02 0.0023 24.3 8.7 63 78-143 33-97 (149)
24 PHA02819 hypothetical protein; 53.4 9.5 0.00021 27.0 1.7 24 61-84 44-67 (71)
25 COG3671 Predicted membrane pro 53.2 3.6 7.9E-05 32.1 -0.5 32 56-87 69-103 (125)
26 PF09753 Use1: Membrane fusion 52.2 14 0.0003 32.3 2.9 16 57-72 225-240 (251)
27 PHA02975 hypothetical protein; 52.2 13 0.00027 26.2 2.1 26 59-84 40-65 (69)
28 PHA02650 hypothetical protein; 51.9 10 0.00022 27.5 1.6 25 60-84 46-70 (81)
29 PRK01844 hypothetical protein; 51.5 15 0.00033 26.2 2.4 21 62-82 3-23 (72)
30 COG2332 CcmE Cytochrome c-type 51.4 55 0.0012 26.7 6.0 38 105-145 71-109 (153)
31 KOG0809 SNARE protein TLG2/Syn 50.3 13 0.00029 33.4 2.5 13 43-59 272-284 (305)
32 PRK12785 fliL flagellar basal 50.0 27 0.00058 28.7 4.2 16 124-140 87-102 (166)
33 PF14283 DUF4366: Domain of un 49.3 16 0.00034 31.6 2.8 24 70-93 167-190 (218)
34 PF12877 DUF3827: Domain of un 48.7 5.4 0.00012 39.5 -0.2 57 22-93 244-301 (684)
35 PF10907 DUF2749: Protein of u 48.7 22 0.00049 24.7 2.9 16 74-89 13-28 (66)
36 PRK08455 fliL flagellar basal 46.6 24 0.00052 29.5 3.4 15 124-139 103-117 (182)
37 PRK06531 yajC preprotein trans 46.3 10 0.00022 29.4 1.0 12 79-90 13-24 (113)
38 COG3763 Uncharacterized protei 45.9 20 0.00044 25.4 2.4 20 62-81 3-22 (71)
39 COG4698 Uncharacterized protei 45.5 19 0.0004 30.3 2.5 29 71-99 19-47 (197)
40 PRK00523 hypothetical protein; 45.1 22 0.00047 25.4 2.4 20 63-82 5-24 (72)
41 PF12505 DUF3712: Protein of u 44.7 1.2E+02 0.0027 23.2 7.0 73 139-217 2-76 (125)
42 PF07790 DUF1628: Protein of u 44.5 1.1E+02 0.0024 21.5 7.8 8 88-95 35-42 (80)
43 KOG0810 SNARE protein Syntaxin 44.4 7.2 0.00016 35.3 -0.1 7 57-63 272-278 (297)
44 COG5294 Uncharacterized protei 43.0 64 0.0014 24.9 4.9 16 105-120 51-66 (113)
45 PF05545 FixQ: Cbb3-type cytoc 42.3 12 0.00026 24.2 0.7 22 69-90 13-34 (49)
46 PF07787 DUF1625: Protein of u 42.1 26 0.00056 30.5 3.0 13 76-88 236-248 (248)
47 PHA02844 putative transmembran 41.4 23 0.0005 25.3 2.1 24 61-84 46-69 (75)
48 PF09604 Potass_KdpF: F subuni 40.0 11 0.00024 21.3 0.3 20 71-90 5-24 (25)
49 PF10177 DUF2371: Uncharacteri 39.9 64 0.0014 26.0 4.7 15 68-82 45-59 (141)
50 cd01324 cbb3_Oxidase_CcoQ Cyto 38.5 17 0.00036 23.7 1.0 22 69-90 14-35 (48)
51 KOG4331 Polytopic membrane pro 37.0 21 0.00045 36.6 1.8 18 67-84 156-173 (865)
52 KOG4433 Tweety transmembrane/c 36.5 28 0.0006 33.6 2.5 18 47-64 72-89 (526)
53 PF15145 DUF4577: Domain of un 36.2 27 0.00059 27.1 1.9 27 62-88 62-88 (128)
54 PHA02692 hypothetical protein; 35.5 23 0.0005 25.0 1.3 9 61-69 43-51 (70)
55 PF15050 SCIMP: SCIMP protein 35.4 15 0.00033 28.8 0.4 25 62-87 8-32 (133)
56 PF06092 DUF943: Enterobacteri 35.0 24 0.00052 29.0 1.6 17 72-88 12-28 (157)
57 PF14654 Epiglycanin_C: Mucin, 34.5 41 0.00089 25.4 2.6 21 65-85 22-42 (106)
58 PF05170 AsmA: AsmA family; I 34.2 1.6E+02 0.0034 28.7 7.5 96 91-196 440-535 (604)
59 PF15012 DUF4519: Domain of un 33.5 47 0.001 22.5 2.5 18 72-89 39-56 (56)
60 COG5353 Uncharacterized protei 33.1 21 0.00046 29.0 1.0 28 61-88 6-33 (161)
61 PF11395 DUF2873: Protein of u 33.1 19 0.00042 22.3 0.6 14 73-86 19-32 (43)
62 PF02009 Rifin_STEVOR: Rifin/s 32.8 17 0.00037 32.9 0.4 22 66-87 259-280 (299)
63 PF04478 Mid2: Mid2 like cell 32.6 35 0.00077 27.9 2.2 43 72-125 61-103 (154)
64 PRK13165 cytochrome c-type bio 32.6 2.8E+02 0.0061 22.8 8.6 27 118-145 88-115 (160)
65 PF00927 Transglut_C: Transglu 32.3 83 0.0018 23.2 4.1 58 105-163 14-75 (107)
66 PF04906 Tweety: Tweety; Inte 31.8 52 0.0011 31.0 3.5 9 57-65 58-66 (406)
67 PRK14759 potassium-transportin 31.5 19 0.00042 21.0 0.4 20 71-90 9-28 (29)
68 KOG3306 Predicted membrane pro 31.0 32 0.0007 28.6 1.7 22 14-35 34-55 (185)
69 PF04790 Sarcoglycan_1: Sarcog 31.0 30 0.00065 30.7 1.7 14 107-120 87-100 (264)
70 TIGR02115 potass_kdpF K+-trans 30.7 10 0.00022 21.7 -0.9 20 71-90 4-23 (26)
71 PF14221 DUF4330: Domain of un 30.6 3E+02 0.0065 22.5 8.9 19 69-87 20-38 (168)
72 PF13396 PLDc_N: Phospholipase 30.6 58 0.0013 20.3 2.6 24 61-89 23-46 (46)
73 PRK13159 cytochrome c-type bio 30.2 3.1E+02 0.0066 22.5 9.6 54 118-180 82-139 (155)
74 PF06024 DUF912: Nucleopolyhed 29.9 68 0.0015 24.0 3.3 14 73-86 73-86 (101)
75 PHA03049 IMV membrane protein; 29.6 22 0.00048 24.9 0.5 20 68-87 5-24 (68)
76 PHA03278 envelope glycoprotein 29.0 64 0.0014 29.8 3.5 13 69-81 317-329 (347)
77 PF05478 Prominin: Prominin; 28.6 51 0.0011 33.8 3.1 23 59-81 139-161 (806)
78 PF02723 NS3_envE: Non-structu 28.0 70 0.0015 23.4 2.9 19 61-79 17-35 (82)
79 COG3462 Predicted membrane pro 27.5 71 0.0015 24.7 2.9 23 61-83 8-30 (117)
80 PF05961 Chordopox_A13L: Chord 27.3 25 0.00053 24.7 0.4 20 68-87 5-24 (68)
81 COG4736 CcoQ Cbb3-type cytochr 27.2 30 0.00064 23.8 0.8 15 76-90 20-34 (60)
82 PF08113 CoxIIa: Cytochrome c 26.7 35 0.00076 20.6 0.9 13 71-83 11-23 (34)
83 KOG2927 Membrane component of 26.6 36 0.00078 31.6 1.4 26 62-87 226-251 (372)
84 COG1463 Ttg2C ABC-type transpo 26.4 1.4E+02 0.003 27.5 5.3 48 130-179 56-103 (359)
85 PF15394 DUF4616: Domain of un 26.3 30 0.00066 32.5 0.9 10 53-62 14-23 (537)
86 PF07009 DUF1312: Protein of u 25.7 2.2E+02 0.0048 21.5 5.6 28 109-137 49-76 (113)
87 PF01102 Glycophorin_A: Glycop 25.7 27 0.00058 27.4 0.4 24 74-97 77-101 (122)
88 PF15330 SIT: SHP2-interacting 25.5 49 0.0011 25.3 1.8 24 63-86 1-25 (107)
89 PF01102 Glycophorin_A: Glycop 25.5 26 0.00057 27.5 0.3 10 73-82 73-82 (122)
90 cd07912 Tweety_N N-terminal do 25.2 88 0.0019 29.7 3.8 26 52-79 74-99 (418)
91 COG5325 t-SNARE complex subuni 24.9 49 0.0011 29.6 1.9 9 52-60 254-262 (283)
92 PF03929 PepSY_TM: PepSY-assoc 24.8 91 0.002 17.8 2.4 11 72-82 16-26 (27)
93 COG1589 FtsQ Cell division sep 24.7 84 0.0018 27.6 3.4 31 72-102 39-69 (269)
94 PF14927 Neurensin: Neurensin 24.5 1.5E+02 0.0033 23.8 4.5 12 71-82 53-64 (140)
95 PF11770 GAPT: GRB2-binding ad 24.4 94 0.002 25.4 3.3 22 66-87 14-35 (158)
96 PRK10893 lipopolysaccharide ex 24.4 1.5E+02 0.0032 24.9 4.7 14 87-100 37-50 (192)
97 KOG1773 Stress responsive prot 23.8 1.8E+02 0.004 20.1 4.2 36 55-90 26-61 (63)
98 PF14257 DUF4349: Domain of un 23.6 82 0.0018 27.4 3.1 14 73-86 248-261 (262)
99 PRK13836 conjugal transfer pro 23.5 88 0.0019 26.7 3.2 28 61-88 30-57 (220)
100 PF09125 COX2-transmemb: Cytoc 23.0 1.3E+02 0.0027 18.6 2.9 12 62-73 15-26 (38)
101 PRK05886 yajC preprotein trans 22.8 29 0.00064 26.7 0.1 13 77-89 13-25 (109)
102 PF07495 Y_Y_Y: Y_Y_Y domain; 22.3 40 0.00086 22.3 0.7 12 16-27 35-46 (66)
103 PF07705 CARDB: CARDB; InterP 22.0 1.8E+02 0.0039 20.3 4.3 41 105-149 18-58 (101)
104 PF06637 PV-1: PV-1 protein (P 22.0 97 0.0021 29.1 3.3 13 105-117 85-97 (442)
105 PF10969 DUF2771: Protein of u 21.4 85 0.0018 25.7 2.6 15 82-96 23-40 (161)
106 PF01186 Lysyl_oxidase: Lysyl 21.2 64 0.0014 27.6 1.8 22 14-35 154-175 (205)
107 PF09788 Tmemb_55A: Transmembr 21.1 93 0.002 27.5 2.9 19 62-80 200-218 (256)
108 PF11606 AlcCBM31: Family 31 c 20.8 70 0.0015 23.6 1.7 25 115-139 4-28 (93)
109 PF07184 CTV_P33: Citrus trist 20.8 76 0.0016 27.2 2.2 22 19-40 242-263 (303)
110 COG2991 Uncharacterized protei 20.8 1.1E+02 0.0024 21.9 2.6 19 63-81 4-22 (77)
111 PF10614 CsgF: Type VIII secre 20.4 59 0.0013 26.2 1.4 17 78-94 18-34 (142)
112 PF12955 DUF3844: Domain of un 20.3 81 0.0018 24.0 2.0 7 62-68 68-74 (103)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=261.39 Aligned_cols=177 Identities=16% Similarity=0.248 Sum_probs=145.3
Q ss_pred CCCCceeehHHHHHHHHHHHHHHHHHHhheeeEEeecCCcEEEEEEEEEecC-------CCce----EEEEEEEECCCCe
Q 041440 52 KRRNSCCTRVCWIILVLFVIGISIGITLVILHKVYSPKGAILFIADVHVKNQ-------SRPR----YEFTMKVKNPNEN 120 (237)
Q Consensus 52 ~~~~~CC~c~~~~~~~ll~liil~gi~~~il~lv~rP~~P~fsV~s~~v~~~-------~s~~----~~ltl~~~NPN~k 120 (237)
+|+|+||+||+|++++ ++++++++++++|++||||+|+|+|+++++... .+.. ++++++++|||.
T Consensus 31 ~~r~~~~~c~~~~~a~---~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~- 106 (219)
T PLN03160 31 TRRRNCIKCCGCITAT---LLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV- 106 (219)
T ss_pred cccccceEEHHHHHHH---HHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-
Confidence 3444566565665433 334466777788999999999999999999531 1334 444568899998
Q ss_pred eeEEEcCCcEEEEEECCEEeecCCCCCceecCCCeEEEEEEEEEeeecCChHHHHHhhccccCceEEEEEEEEEEEEEEE
Q 041440 121 VAISYENDGDAFLLLKKKKLASGKFPQLEQEGGDSRNVRITLTGSNTVVPDEVSKSMHDKKTERAVSLQLEMNLKGEMNI 200 (237)
Q Consensus 121 i~i~Y~~~~~v~v~Y~g~~Lg~g~~p~F~q~~~~tt~v~~~l~~~~~~l~~~~~~~L~~d~~~g~v~l~v~v~~~vr~kv 200 (237)
++|+| +++++.++|+|+.+|++.+|+|+|++++++.+.+++...+..+.. ..+|.+|..+|.++|++++++++|+++
T Consensus 107 ~~~~Y-~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~--~~~L~~D~~~G~v~l~~~~~v~gkVkv 183 (219)
T PLN03160 107 ASFKY-SNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS--VPGLLTDISSGLLNMNSYTRIGGKVKI 183 (219)
T ss_pred eeEEE-cCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc--chhHHHHhhCCeEEEEEEEEEEEEEEE
Confidence 89999 999999999999999999999999999999999998876554432 256888999999999999999999999
Q ss_pred eeEEEcceeEEEEeEEEEeccCCCceeeccceeeecC
Q 041440 201 GFLNLWSKDMHVVCDFKVSTLRTGTKVLSQKCDTQIK 237 (237)
Q Consensus 201 g~~~s~~~~v~V~C~l~v~~~~~~~~i~~~~C~~~~~ 237 (237)
|++.++++.++++|+++|+..+ ..+++++|+.+++
T Consensus 184 ~~i~k~~v~~~v~C~v~V~~~~--~~i~~~~C~~~~~ 218 (219)
T PLN03160 184 LKIIKKHVVVKMNCTMTVNITS--QAIQGQKCKRHVD 218 (219)
T ss_pred EEEEEEEEEEEEEeEEEEECCC--CEEeccEeccccc
Confidence 9999999999999999998743 4888999999875
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.45 E-value=1.6e-13 Score=102.62 Aligned_cols=98 Identities=18% Similarity=0.372 Sum_probs=74.1
Q ss_pred EEEEECCCCeeeEEEcCCcEEEEEECCEEee-cCCCCCceecCCCeEEEEEEEEEeeecCChHHHHHhhccccCceEEEE
Q 041440 111 TMKVKNPNENVAISYENDGDAFLLLKKKKLA-SGKFPQLEQEGGDSRNVRITLTGSNTVVPDEVSKSMHDKKTERAVSLQ 189 (237)
Q Consensus 111 tl~~~NPN~ki~i~Y~~~~~v~v~Y~g~~Lg-~g~~p~F~q~~~~tt~v~~~l~~~~~~l~~~~~~~L~~d~~~g~v~l~ 189 (237)
||+++|||. ++++| +++++.++|+|..+| .+..++|+|++++++.+.+.+..+...+ .+.+.++. +|..+++
T Consensus 1 ~l~v~NPN~-~~i~~-~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~-~~~~~~~ 73 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRY-DSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL-AGRVPFD 73 (101)
T ss_dssp EEEEEESSS-S-EEE-EEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH-HTTSCEE
T ss_pred CEEEECCCc-eeEEE-eCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh-ccccceE
Confidence 689999998 99999 999999999999999 7789999999999999999888775444 35555556 5677788
Q ss_pred EEEEEEEEEEE-eeEEEcceeEEEEeE
Q 041440 190 LEMNLKGEMNI-GFLNLWSKDMHVVCD 215 (237)
Q Consensus 190 v~v~~~vr~kv-g~~~s~~~~v~V~C~ 215 (237)
+.+++++++++ +.....+..+.++|+
T Consensus 74 v~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 74 VTYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEEEcccceeeeEEEeEEeE
Confidence 88888888884 443334445555554
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.34 E-value=4.3e-06 Score=63.12 Aligned_cols=60 Identities=25% Similarity=0.290 Sum_probs=54.4
Q ss_pred CCceEEEEEEEECCCCeeeEEEcCCcEEEEEECCEEeecCCCC-CceecCCCeEEEEEEEEEe
Q 041440 104 SRPRYEFTMKVKNPNENVAISYENDGDAFLLLKKKKLASGKFP-QLEQEGGDSRNVRITLTGS 165 (237)
Q Consensus 104 ~s~~~~ltl~~~NPN~ki~i~Y~~~~~v~v~Y~g~~Lg~g~~p-~F~q~~~~tt~v~~~l~~~ 165 (237)
....+.+++++.|||. ..+.| ++++..++|+|..+|+|..+ .+..++++++.+.+.++.+
T Consensus 13 ~~~~~~l~l~v~NPN~-~~l~~-~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~ 73 (100)
T smart00769 13 LEIEIVLKVKVQNPNP-FPIPV-NGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN 73 (100)
T ss_pred eEEEEEEEEEEECCCC-Ccccc-ccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee
Confidence 3678899999999996 79999 99999999999999999986 7999999999999988873
No 4
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.62 E-value=0.0037 Score=50.69 Aligned_cols=81 Identities=16% Similarity=0.155 Sum_probs=64.1
Q ss_pred CCcEEEEEEEEEe--cCCCceEEEEEEEECCCCeeeEEEcCCcEEEEEECCEEeecCCC-CCceecCCCeEEEEEEEEEe
Q 041440 89 KGAILFIADVHVK--NQSRPRYEFTMKVKNPNENVAISYENDGDAFLLLKKKKLASGKF-PQLEQEGGDSRNVRITLTGS 165 (237)
Q Consensus 89 ~~P~fsV~s~~v~--~~~s~~~~ltl~~~NPN~ki~i~Y~~~~~v~v~Y~g~~Lg~g~~-p~F~q~~~~tt~v~~~l~~~ 165 (237)
+.|...--.+... .++..++-.+++++|||. ..+-- .+++..++-+|.++|+|.. .++..++++...+.+.+..+
T Consensus 31 ~~p~ve~~ka~wGkvt~s~~EiV~t~KiyNPN~-fPipV-tgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~~d 108 (161)
T COG5608 31 KKPGVESMKAKWGKVTNSETEIVGTLKIYNPNP-FPIPV-TGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPLRLD 108 (161)
T ss_pred CCCCceEEEEEEEEEeccceEEEEEEEecCCCC-cceee-eceEEEEEEcceEeeccccccceEECCCCeEEEEEEEEEe
Confidence 4565554444443 246779999999999996 68888 8899999999999999985 56999999999999998877
Q ss_pred eecCCh
Q 041440 166 NTVVPD 171 (237)
Q Consensus 166 ~~~l~~ 171 (237)
...+.+
T Consensus 109 ~~~~ke 114 (161)
T COG5608 109 NSKIKE 114 (161)
T ss_pred hHHHHH
Confidence 555543
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.48 E-value=0.00036 Score=64.20 Aligned_cols=85 Identities=19% Similarity=0.317 Sum_probs=49.9
Q ss_pred CCCceeehHHHHHHHHHHHHHHHHHHhheeeEEeecCCcEEEEEEEEEecC----CCceEEEEEEEECCCCeeeEEEcCC
Q 041440 53 RRNSCCTRVCWIILVLFVIGISIGITLVILHKVYSPKGAILFIADVHVKNQ----SRPRYEFTMKVKNPNENVAISYEND 128 (237)
Q Consensus 53 ~~~~CC~c~~~~~~~ll~liil~gi~~~il~lv~rP~~P~fsV~s~~v~~~----~s~~~~ltl~~~NPN~ki~i~Y~~~ 128 (237)
++++||..+..++++.+++++++|.++++++..-+| --.|+=..|.+- ...-||++|.|.|||. +.|.- ++
T Consensus 294 r~r~~~~r~~~c~~~~i~~lL~ig~~~gFv~AttKp---L~~v~v~~I~NVlaS~qELmfdl~V~A~NPn~-~~V~I-~d 368 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILLLLVIGFAIGFVFATTKP---LTDVQVVSIQNVLASEQELMFDLTVEAFNPNW-FTVTI-DD 368 (387)
T ss_pred ccccHHhhhhHHHHHHHHHHHHHHHHHHhhhhcCcc---cccceEEEeeeeeeccceEEEeeEEEEECCCe-EEEEe-cc
Confidence 345566543322222333344444444444444454 333333333332 2578999999999995 79998 89
Q ss_pred cEEEEEECCEEeec
Q 041440 129 GDAFLLLKKKKLAS 142 (237)
Q Consensus 129 ~~v~v~Y~g~~Lg~ 142 (237)
.++.|+-+..-++.
T Consensus 369 ~dldIFAKS~yvg~ 382 (387)
T PF12751_consen 369 MDLDIFAKSRYVGT 382 (387)
T ss_pred ceeeeEecCCccCc
Confidence 99999976655554
No 6
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.30 E-value=0.007 Score=52.63 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=43.8
Q ss_pred ceEEE--EEEEECCCCeeeEEEcCCcEEEEEECCEEeecCCCCC-ceecCCCeEEEEEEEEE
Q 041440 106 PRYEF--TMKVKNPNENVAISYENDGDAFLLLKKKKLASGKFPQ-LEQEGGDSRNVRITLTG 164 (237)
Q Consensus 106 ~~~~l--tl~~~NPN~ki~i~Y~~~~~v~v~Y~g~~Lg~g~~p~-F~q~~~~tt~v~~~l~~ 164 (237)
..+++ +|.+.||| ...+.- ..+++++.|....+|.+.... ...++++...+...+..
T Consensus 122 v~l~itn~lNIsN~N-Fy~V~V-t~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~tV~t 181 (238)
T PF07092_consen 122 VQLNITNTLNISNPN-FYPVTV-TNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYTVKT 181 (238)
T ss_pred EEEEEEEEEEccCCC-EEEEEE-EeEEEEEEEEEeEEeeeEecceEEecccCCceEEEEeeE
Confidence 44444 58999999 689998 889999999999999987654 46677777766665553
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=96.01 E-value=0.094 Score=45.22 Aligned_cols=98 Identities=14% Similarity=0.196 Sum_probs=57.8
Q ss_pred CCCCCceeehHHHHHHHHHHHHHHHHHHhheeeEEeecC--CcEEEEEEEEE----------ecC-------CCceEEEE
Q 041440 51 NKRRNSCCTRVCWIILVLFVIGISIGITLVILHKVYSPK--GAILFIADVHV----------KNQ-------SRPRYEFT 111 (237)
Q Consensus 51 ~~~~~~CC~c~~~~~~~ll~liil~gi~~~il~lv~rP~--~P~fsV~s~~v----------~~~-------~s~~~~lt 111 (237)
+|+...||+|++-+++++.+ +++++++.++--=.|+ .-.++|+++.+ +.+ -+++. +.
T Consensus 33 r~~~~~c~~~~~a~~l~l~~---v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~ 108 (219)
T PLN03160 33 RRNCIKCCGCITATLLILAT---TILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-AS 108 (219)
T ss_pred cccceEEHHHHHHHHHHHHH---HHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-ee
Confidence 68899999887777767733 2333333443334443 23333333321 111 15566 55
Q ss_pred EEEECCCCeeeEEEcCCcEEEEEECCEEeecCCCCCceecCCCeEEEE
Q 041440 112 MKVKNPNENVAISYENDGDAFLLLKKKKLASGKFPQLEQEGGDSRNVR 159 (237)
Q Consensus 112 l~~~NPN~ki~i~Y~~~~~v~v~Y~g~~Lg~g~~p~F~q~~~~tt~v~ 159 (237)
+.-+| ..+.++| ++..+ +...+..|..++..+...+.+..-
T Consensus 109 ~~Y~~--~~~~v~Y-~g~~v----G~a~~p~g~~~ar~T~~l~~tv~~ 149 (219)
T PLN03160 109 FKYSN--TTTTIYY-GGTVV----GEARTPPGKAKARRTMRMNVTVDI 149 (219)
T ss_pred EEEcC--eEEEEEE-CCEEE----EEEEcCCcccCCCCeEEEEEEEEE
Confidence 66653 4588999 65433 446688888999888888888643
No 8
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=88.96 E-value=2.3 Score=32.79 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=35.1
Q ss_pred cCCcEEEEEEEEEecCCCceEEEEEEEEC-CCCeeeEEEcCCcEEEEEECCEEeecCC--CCCceecCCCeEEEEEEEEE
Q 041440 88 PKGAILFIADVHVKNQSRPRYEFTMKVKN-PNENVAISYENDGDAFLLLKKKKLASGK--FPQLEQEGGDSRNVRITLTG 164 (237)
Q Consensus 88 P~~P~fsV~s~~v~~~~s~~~~ltl~~~N-PN~ki~i~Y~~~~~v~v~Y~g~~Lg~g~--~p~F~q~~~~tt~v~~~l~~ 164 (237)
..+.+.++..+++. ++.+.++++.+.- |.. ..+- .--...|++..+|.-. +|+ +...+..+.+.+..
T Consensus 31 ~~~v~~~~~gf~vv--~d~~v~v~f~Vtr~~~~--~a~C---~VrA~~~d~aeVGrreV~vp~---~~~~~~~~~v~v~T 100 (112)
T PF14155_consen 31 SPPVSAEVIGFEVV--DDSTVEVTFDVTRDPGR--PAVC---IVRALDYDGAEVGRREVLVPP---SGERTVRVTVTVRT 100 (112)
T ss_pred CCCceEEEEEEEEC--CCCEEEEEEEEEECCCC--CEEE---EEEEEeCCCCEEEEEEEEECC---CCCcEEEEEEEEEe
Confidence 33444555555553 3345666666554 442 3333 1223347888888654 465 34444455555554
Q ss_pred e
Q 041440 165 S 165 (237)
Q Consensus 165 ~ 165 (237)
.
T Consensus 101 t 101 (112)
T PF14155_consen 101 T 101 (112)
T ss_pred c
Confidence 4
No 9
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=83.85 E-value=3 Score=32.77 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhheee--EEeecCCcEEEEEEEEEecCCCceEEEEEEEECCCC
Q 041440 68 LFVIGISIGITLVILH--KVYSPKGAILFIADVHVKNQSRPRYEFTMKVKNPNE 119 (237)
Q Consensus 68 ll~liil~gi~~~il~--lv~rP~~P~fsV~s~~v~~~~s~~~~ltl~~~NPN~ 119 (237)
.+.++++++++++++| +.-+++.|.+++............|-+-++++|--.
T Consensus 9 ~Is~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~~~gqyyVpF~V~N~gg 62 (122)
T TIGR02588 9 GISTLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERMQTGQYYVPFAIHNLGG 62 (122)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEEeCCEEEEEEEEEeCCC
Confidence 3455566667777765 555678999998887764333557888889998443
No 10
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=80.78 E-value=0.37 Score=31.65 Aligned_cols=6 Identities=33% Similarity=1.171 Sum_probs=3.0
Q ss_pred Cceeeh
Q 041440 55 NSCCTR 60 (237)
Q Consensus 55 ~~CC~c 60 (237)
.+||||
T Consensus 24 ggcccc 29 (56)
T TIGR03602 24 GGCCCC 29 (56)
T ss_pred CCeEEE
Confidence 355544
No 11
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=75.30 E-value=6 Score=32.48 Aligned_cols=26 Identities=12% Similarity=0.292 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhheeeEEe
Q 041440 61 VCWIILVLFVIGISIGITLVILHKVY 86 (237)
Q Consensus 61 ~~~~~~~ll~liil~gi~~~il~lv~ 86 (237)
..|++++++++++++|+.+.++|+..
T Consensus 17 ~~~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 17 SLWILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred eeehHHHHHHHHHHHHHHHHHHhhhc
Confidence 68988888888888888888888775
No 12
>PRK05529 cell division protein FtsQ; Provisional
Probab=73.43 E-value=43 Score=29.39 Aligned_cols=25 Identities=8% Similarity=0.266 Sum_probs=15.8
Q ss_pred EEEEEEECCCCeeeEEEcCCcEEEEE
Q 041440 109 EFTMKVKNPNENVAISYENDGDAFLL 134 (237)
Q Consensus 109 ~ltl~~~NPN~ki~i~Y~~~~~v~v~ 134 (237)
+++++-+.||. +.|.-.+.--+..+
T Consensus 111 sa~V~r~~P~t-l~I~V~Er~pvA~~ 135 (255)
T PRK05529 111 SYSVESKPPGT-IVVRVVERVPLAFI 135 (255)
T ss_pred EEEEEEeCCCE-EEEEEEEeeeEEEE
Confidence 56778889994 66666444444444
No 13
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=73.38 E-value=8.2 Score=32.41 Aligned_cols=25 Identities=12% Similarity=0.619 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhheeeEEeecCCc
Q 041440 67 VLFVIGISIGITLVILHKVYSPKGA 91 (237)
Q Consensus 67 ~ll~liil~gi~~~il~lv~rP~~P 91 (237)
+++++.+++++++++++.+++|..|
T Consensus 7 F~~Lla~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 7 FLILLALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHHHHhheeeEEEccCCC
Confidence 3445666777777888899999876
No 14
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=71.94 E-value=46 Score=27.33 Aligned_cols=65 Identities=18% Similarity=0.349 Sum_probs=32.1
Q ss_pred EEEEEEEECCCCeeeEEEcCCcEEEEEECCEE-eecCCCCCceecCCCeEEEEE-EEEE--eeecCChHHHHHhhcc
Q 041440 108 YEFTMKVKNPNENVAISYENDGDAFLLLKKKK-LASGKFPQLEQEGGDSRNVRI-TLTG--SNTVVPDEVSKSMHDK 180 (237)
Q Consensus 108 ~~ltl~~~NPN~ki~i~Y~~~~~v~v~Y~g~~-Lg~g~~p~F~q~~~~tt~v~~-~l~~--~~~~l~~~~~~~L~~d 180 (237)
..+++.+...+..+.+.| .++-=+++-+|+. +++|.+-. .+ ++.+ ++-. .+.-.+++++++|+..
T Consensus 78 ~~v~F~vtD~~~~v~V~Y-~GilPDlFrEG~gVVveG~~~~-----~g--~F~A~evLAKhdekYmPpEv~~al~~~ 146 (159)
T PRK13150 78 LKVNFSLYDAEGSVTVSY-EGILPDLFREGQGVVVQGTLEK-----GN--HVLAHEVLAKHDENYTPPEVEKAMQEN 146 (159)
T ss_pred cEEEEEEEcCCcEEEEEE-eccCCccccCCCeEEEEEEECC-----CC--EEEEeEEEeCCCCCCCCHHHHHHHHHh
Confidence 344444454455667777 5554455555543 45565521 11 1221 1111 2234678888888653
No 15
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=69.68 E-value=7.1 Score=31.85 Aligned_cols=17 Identities=12% Similarity=-0.238 Sum_probs=9.8
Q ss_pred EEEcCCcEEEEEECCEEe
Q 041440 123 ISYENDGDAFLLLKKKKL 140 (237)
Q Consensus 123 i~Y~~~~~v~v~Y~g~~L 140 (237)
-+| =..++++.+.+...
T Consensus 78 ~ry-lkv~i~L~~~~~~~ 94 (162)
T PRK07021 78 DRV-LYVGLTLRLPDEAT 94 (162)
T ss_pred ceE-EEEEEEEEECCHHH
Confidence 455 44666666665544
No 16
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=69.18 E-value=6.7 Score=25.43 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhheeeEEeecC
Q 041440 65 ILVLFVIGISIGITLVILHKVYSPK 89 (237)
Q Consensus 65 ~~~ll~liil~gi~~~il~lv~rP~ 89 (237)
++++++..+++|+++..+|..|-|.
T Consensus 9 ~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 9 SLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred HHHHHHHHHHHHHhhheeeeccCCc
Confidence 3456777889999999999999873
No 17
>CHL00020 psbN photosystem II protein N
Probab=66.15 E-value=7.6 Score=24.84 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhheeeEEeec
Q 041440 65 ILVLFVIGISIGITLVILHKVYSP 88 (237)
Q Consensus 65 ~~~ll~liil~gi~~~il~lv~rP 88 (237)
++++++..+++++++..+|..|-|
T Consensus 6 ~~~i~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 6 LVAIFISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred hHHHHHHHHHHHhhheeeeeccCC
Confidence 345677788999999999999987
No 18
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=65.11 E-value=10 Score=30.23 Aligned_cols=12 Identities=17% Similarity=-0.103 Sum_probs=6.9
Q ss_pred CcEEEEEECCEE
Q 041440 128 DGDAFLLLKKKK 139 (237)
Q Consensus 128 ~~~v~v~Y~g~~ 139 (237)
..++.+.+++..
T Consensus 66 k~~i~l~~~~~~ 77 (142)
T PRK07718 66 RIQFKIETDSKK 77 (142)
T ss_pred EEEEEEEECCHH
Confidence 456666666544
No 19
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=64.44 E-value=69 Score=28.32 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=14.1
Q ss_pred ceEEEEEEEECCCCeeeE
Q 041440 106 PRYEFTMKVKNPNENVAI 123 (237)
Q Consensus 106 ~~~~ltl~~~NPN~ki~i 123 (237)
..=|+|+.++|||.++.=
T Consensus 108 S~rnvtvnarn~~g~v~~ 125 (292)
T KOG3950|consen 108 SARNVTVNARNPNGKVTG 125 (292)
T ss_pred eccCeeEEccCCCCceee
Confidence 344789999999987753
No 20
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=61.80 E-value=6.3 Score=25.23 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhheeeEEeec
Q 041440 66 LVLFVIGISIGITLVILHKVYSP 88 (237)
Q Consensus 66 ~~ll~liil~gi~~~il~lv~rP 88 (237)
+++.+..+++++++..+|..|.|
T Consensus 7 ~~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHHhhhhhheeCC
Confidence 45667788899999999999986
No 21
>PHA03054 IMV membrane protein; Provisional
Probab=59.55 E-value=8 Score=27.37 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhheeeE
Q 041440 60 RVCWIILVLFVIGISIGITLVILHK 84 (237)
Q Consensus 60 c~~~~~~~ll~liil~gi~~~il~l 84 (237)
+..|.++++++++++++++..++||
T Consensus 45 ~~~~~~~ii~l~~v~~~~l~~flYL 69 (72)
T PHA03054 45 CWGWYWLIIIFFIVLILLLLIYLYL 69 (72)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456544444444444444444443
No 22
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=55.34 E-value=3.9 Score=31.74 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=0.0
Q ss_pred CCCCceeehHHHHHHHHHHHHHHHHHHhheeeEEee
Q 041440 52 KRRNSCCTRVCWIILVLFVIGISIGITLVILHKVYS 87 (237)
Q Consensus 52 ~~~~~CC~c~~~~~~~ll~liil~gi~~~il~lv~r 87 (237)
..+++|..++.|.-+.+|+.++++|-+ +..|++|+
T Consensus 23 ~~~~s~sra~~vagltvLa~LLiAGQa-~TaYfv~~ 57 (114)
T PF09307_consen 23 PQRGSCSRALKVAGLTVLACLLIAGQA-VTAYFVFQ 57 (114)
T ss_dssp ------------------------------------
T ss_pred CCCCCccchhHHHHHHHHHHHHHHhHH-HHHHHHHH
Confidence 344567777788765556555555544 44566776
No 23
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=54.94 E-value=1e+02 Score=24.29 Aligned_cols=63 Identities=13% Similarity=-0.052 Sum_probs=38.9
Q ss_pred HhheeeEEeec--CCcEEEEEEEEEecCCCceEEEEEEEECCCCeeeEEEcCCcEEEEEECCEEeecC
Q 041440 78 TLVILHKVYSP--KGAILFIADVHVKNQSRPRYEFTMKVKNPNENVAISYENDGDAFLLLKKKKLASG 143 (237)
Q Consensus 78 ~~~il~lv~rP--~~P~fsV~s~~v~~~~s~~~~ltl~~~NPN~ki~i~Y~~~~~v~v~Y~g~~Lg~g 143 (237)
+.+++|.++.. +.+..++.+.+- ...+-.+-+..+++|-.+ ..+.. =.+++.+..++...++.
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~-l~~~~~~~v~g~V~N~g~-~~i~~-c~i~~~l~~~~~~~~n~ 97 (149)
T PF09624_consen 33 IPFFGYYWLDKYLKKIELTLTSQKR-LQYSESFYVDGTVTNTGK-FTIKK-CKITVKLYNDKQVSGNK 97 (149)
T ss_pred HHHHHHHHHhhhcCCceEEEeeeee-eeeccEEEEEEEEEECCC-CEeeE-EEEEEEEEeCCCccCch
Confidence 44445555544 456666665553 223667888899999654 46655 35788887766555544
No 24
>PHA02819 hypothetical protein; Provisional
Probab=53.36 E-value=9.5 Score=26.98 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHhheeeE
Q 041440 61 VCWIILVLFVIGISIGITLVILHK 84 (237)
Q Consensus 61 ~~~~~~~ll~liil~gi~~~il~l 84 (237)
..|.++++++++++++++..++||
T Consensus 44 ~~~~~~ii~l~~~~~~~~~~flYL 67 (71)
T PHA02819 44 FLRYYLIIGLVTIVFVIIFIIFYL 67 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544444444444444444443
No 25
>COG3671 Predicted membrane protein [Function unknown]
Probab=53.19 E-value=3.6 Score=32.11 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=19.5
Q ss_pred ceeehHHHHHHHHHHHHHHHHHHhh---eeeEEee
Q 041440 56 SCCTRVCWIILVLFVIGISIGITLV---ILHKVYS 87 (237)
Q Consensus 56 ~CC~c~~~~~~~ll~liil~gi~~~---il~lv~r 87 (237)
..|-|+.|.++.+++.++.+|++.. -+|.++|
T Consensus 69 TFw~~vl~~iIg~Llt~lgiGv~i~~AlgvW~i~R 103 (125)
T COG3671 69 TFWLAVLWWIIGLLLTFLGIGVVILVALGVWYIYR 103 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777776666666666665433 3465554
No 26
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=52.21 E-value=14 Score=32.27 Aligned_cols=16 Identities=13% Similarity=0.434 Sum_probs=8.6
Q ss_pred eeehHHHHHHHHHHHH
Q 041440 57 CCTRVCWIILVLFVIG 72 (237)
Q Consensus 57 CC~c~~~~~~~ll~li 72 (237)
+|.|+.|+++++++++
T Consensus 225 ~~~~~~~~~i~~v~~~ 240 (251)
T PF09753_consen 225 SWGCWTWLMIFVVIIV 240 (251)
T ss_pred cccHHHHHHHHHHHHH
Confidence 3447788755443333
No 27
>PHA02975 hypothetical protein; Provisional
Probab=52.16 E-value=13 Score=26.24 Aligned_cols=26 Identities=27% Similarity=0.292 Sum_probs=11.5
Q ss_pred ehHHHHHHHHHHHHHHHHHHhheeeE
Q 041440 59 TRVCWIILVLFVIGISIGITLVILHK 84 (237)
Q Consensus 59 ~c~~~~~~~ll~liil~gi~~~il~l 84 (237)
++..|.++++++++++++++..++||
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flYL 65 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLYL 65 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466544444333344444444443
No 28
>PHA02650 hypothetical protein; Provisional
Probab=51.94 E-value=10 Score=27.50 Aligned_cols=25 Identities=4% Similarity=0.001 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhheeeE
Q 041440 60 RVCWIILVLFVIGISIGITLVILHK 84 (237)
Q Consensus 60 c~~~~~~~ll~liil~gi~~~il~l 84 (237)
+..|.++++++++++++++..++||
T Consensus 46 ~~~~~~~ii~i~~v~i~~l~~flYL 70 (81)
T PHA02650 46 WFNGQNFIFLIFSLIIVALFSFFVF 70 (81)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456544444444444445555554
No 29
>PRK01844 hypothetical protein; Provisional
Probab=51.48 E-value=15 Score=26.15 Aligned_cols=21 Identities=19% Similarity=0.550 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhhee
Q 041440 62 CWIILVLFVIGISIGITLVIL 82 (237)
Q Consensus 62 ~~~~~~ll~liil~gi~~~il 82 (237)
.|+.+.+.++.+++|++++++
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff 23 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFF 23 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355445566677777776654
No 30
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=51.45 E-value=55 Score=26.66 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=24.7
Q ss_pred CceEEEEEEEECCCCeeeEEEcCCcEEEEEECCEE-eecCCC
Q 041440 105 RPRYEFTMKVKNPNENVAISYENDGDAFLLLKKKK-LASGKF 145 (237)
Q Consensus 105 s~~~~ltl~~~NPN~ki~i~Y~~~~~v~v~Y~g~~-Lg~g~~ 145 (237)
+..+.++++ --|.++.+.| .++-=+++-+|+- +++|.+
T Consensus 71 ~~~v~F~vt--D~~~~v~V~Y-~GiLPDLFREGQgVVa~G~~ 109 (153)
T COG2332 71 SLKVSFVVT--DGNKSVTVSY-EGILPDLFREGQGVVAEGQL 109 (153)
T ss_pred CcEEEEEEe--cCCceEEEEE-eccCchhhhcCCeEEEEEEe
Confidence 344444444 4477789999 7777777777765 556765
No 31
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.31 E-value=13 Score=33.44 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=6.6
Q ss_pred cccccCCCCCCCCceee
Q 041440 43 VEKYRNPMNKRRNSCCT 59 (237)
Q Consensus 43 ~~~~~~~~~~~~~~CC~ 59 (237)
+++|+ ||.+.|||
T Consensus 272 Ae~yQ----k~~~k~~~ 284 (305)
T KOG0809|consen 272 AERYQ----KRNKKMKV 284 (305)
T ss_pred HHHHH----hcCCceEe
Confidence 36663 44445554
No 32
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=49.99 E-value=27 Score=28.65 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=9.6
Q ss_pred EEcCCcEEEEEECCEEe
Q 041440 124 SYENDGDAFLLLKKKKL 140 (237)
Q Consensus 124 ~Y~~~~~v~v~Y~g~~L 140 (237)
+| =...+++.+++...
T Consensus 87 ry-Lkv~i~L~~~~~~~ 102 (166)
T PRK12785 87 QY-LKLKVVLEVKDEKV 102 (166)
T ss_pred eE-EEEEEEEEECCHHH
Confidence 55 35677776766543
No 33
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=49.32 E-value=16 Score=31.60 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=12.7
Q ss_pred HHHHHHHHHhheeeEEeecCCcEE
Q 041440 70 VIGISIGITLVILHKVYSPKGAIL 93 (237)
Q Consensus 70 ~liil~gi~~~il~lv~rP~~P~f 93 (237)
++|+++|..++.++-++|||....
T Consensus 167 llv~l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 167 LLVALIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred HHHHHhhcceEEEEEEeccccccc
Confidence 333344444444445788876543
No 34
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=48.73 E-value=5.4 Score=39.54 Aligned_cols=57 Identities=21% Similarity=0.191 Sum_probs=30.5
Q ss_pred eEEecCcCccccCCCCCCccccccccCCCCCCCCceeehHHHHHHHHHHHHHHHHHHhheeeE-EeecCCcEE
Q 041440 22 YVVQVPKDQIYRVPPPENARIVEKYRNPMNKRRNSCCTRVCWIILVLFVIGISIGITLVILHK-VYSPKGAIL 93 (237)
Q Consensus 22 yv~~~pk~q~y~vppp~~~~~~~~~~~~~~~~~~~CC~c~~~~~~~ll~liil~gi~~~il~l-v~rP~~P~f 93 (237)
|.||.+..|-|... .+.... .++++ +|+|+++++-++++-++++|+|+ +-|=+.-.|
T Consensus 244 y~V~~~~AqPv~~~-a~P~~~--------s~~~N------lWII~gVlvPv~vV~~Iiiil~~~LCRk~K~eF 301 (684)
T PF12877_consen 244 YRVQGIVAQPVEKQ-AEPPAK--------SPPNN------LWIIAGVLVPVLVVLLIIIILYWKLCRKNKLEF 301 (684)
T ss_pred ceeccccccccccc-cCCCCC--------CCCCC------eEEEehHhHHHHHHHHHHHHHHHHHhcccccCC
Confidence 78889999887753 111100 11122 89877776666655555555543 334333333
No 35
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=48.69 E-value=22 Score=24.75 Aligned_cols=16 Identities=6% Similarity=0.046 Sum_probs=11.8
Q ss_pred HHHHHhheeeEEeecC
Q 041440 74 SIGITLVILHKVYSPK 89 (237)
Q Consensus 74 l~gi~~~il~lv~rP~ 89 (237)
+.+.++.+.|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 4445666789999998
No 36
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=46.59 E-value=24 Score=29.52 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=9.0
Q ss_pred EEcCCcEEEEEECCEE
Q 041440 124 SYENDGDAFLLLKKKK 139 (237)
Q Consensus 124 ~Y~~~~~v~v~Y~g~~ 139 (237)
+| =..++++.+++..
T Consensus 103 ry-Lkv~i~Le~~~~~ 117 (182)
T PRK08455 103 RY-LKTSISLELSNEK 117 (182)
T ss_pred eE-EEEEEEEEECCHh
Confidence 56 4566666666554
No 37
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=46.29 E-value=10 Score=29.45 Aligned_cols=12 Identities=8% Similarity=0.080 Sum_probs=7.4
Q ss_pred hheeeEEeecCC
Q 041440 79 LVILHKVYSPKG 90 (237)
Q Consensus 79 ~~il~lv~rP~~ 90 (237)
++++|+.+||..
T Consensus 13 ~~i~yf~iRPQk 24 (113)
T PRK06531 13 LGLIFFMQRQQK 24 (113)
T ss_pred HHHHHheechHH
Confidence 334566789854
No 38
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.91 E-value=20 Score=25.36 Aligned_cols=20 Identities=20% Similarity=0.551 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhhe
Q 041440 62 CWIILVLFVIGISIGITLVI 81 (237)
Q Consensus 62 ~~~~~~ll~liil~gi~~~i 81 (237)
.|+.+.++++.+++|+++++
T Consensus 3 l~lail~ivl~ll~G~~~G~ 22 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGF 22 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46555566677777777774
No 39
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.47 E-value=19 Score=30.30 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=17.7
Q ss_pred HHHHHHHHhheeeEEeecCCcEEEEEEEE
Q 041440 71 IGISIGITLVILHKVYSPKGAILFIADVH 99 (237)
Q Consensus 71 liil~gi~~~il~lv~rP~~P~fsV~s~~ 99 (237)
|++...++++++-+++.|+.|...+.+.+
T Consensus 19 LAln~l~~~~i~~~vlsp~ee~t~~~~a~ 47 (197)
T COG4698 19 LALNTLLAVLIALFVLSPREEPTHLEDAS 47 (197)
T ss_pred HHHHHHHHHHhheeeccCCCCCchhhccC
Confidence 33444444666667889998666655444
No 40
>PRK00523 hypothetical protein; Provisional
Probab=45.11 E-value=22 Score=25.36 Aligned_cols=20 Identities=15% Similarity=0.002 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhhee
Q 041440 63 WIILVLFVIGISIGITLVIL 82 (237)
Q Consensus 63 ~~~~~ll~liil~gi~~~il 82 (237)
|+.+.+.++++++|++++++
T Consensus 5 ~l~I~l~i~~li~G~~~Gff 24 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYF 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444555566777766654
No 41
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=44.73 E-value=1.2e+02 Score=23.17 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=42.1
Q ss_pred EeecCCCCCceecCCCeEE-EEEEEEEeeecCChHHHHHhhcc-ccCceEEEEEEEEEEEEEEEeeEEEcceeEEEEeEE
Q 041440 139 KLASGKFPQLEQEGGDSRN-VRITLTGSNTVVPDEVSKSMHDK-KTERAVSLQLEMNLKGEMNIGFLNLWSKDMHVVCDF 216 (237)
Q Consensus 139 ~Lg~g~~p~F~q~~~~tt~-v~~~l~~~~~~l~~~~~~~L~~d-~~~g~v~l~v~v~~~vr~kvg~~~s~~~~v~V~C~l 216 (237)
.+|.-.+|+....+..+.. ....+.- .+.+...++..+ ..+..+.+.++.+ .+.++|.++...+.+...=.+
T Consensus 2 ~f~~~~lP~~~~~~~~~~~~~~~~l~i----~d~~~f~~f~~~~~~~~~~~l~l~g~--~~~~~g~l~~~~i~~~k~i~l 75 (125)
T PF12505_consen 2 PFATLDLPQIKIKGNGTISIIDQTLTI----TDQDAFTQFVTALLFNEEVTLTLRGK--TDTHLGGLPFSGIPFDKTITL 75 (125)
T ss_pred ceEEEECCCEEecCCceEEEeeeeEEe----cCHHHHHHHHHHHHhCCcEEEEEEEe--eeEEEccEEEEEEeecceeec
Confidence 4667778888882222222 2222221 245566777777 4556677776666 478888887655555444443
Q ss_pred E
Q 041440 217 K 217 (237)
Q Consensus 217 ~ 217 (237)
+
T Consensus 76 ~ 76 (125)
T PF12505_consen 76 K 76 (125)
T ss_pred c
Confidence 3
No 42
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=44.52 E-value=1.1e+02 Score=21.50 Aligned_cols=8 Identities=13% Similarity=-0.147 Sum_probs=5.2
Q ss_pred cCCcEEEE
Q 041440 88 PKGAILFI 95 (237)
Q Consensus 88 P~~P~fsV 95 (237)
++.|+.++
T Consensus 35 ~~~P~~~~ 42 (80)
T PF07790_consen 35 ESPPQASI 42 (80)
T ss_pred CCCCEEEE
Confidence 45677666
No 43
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.37 E-value=7.2 Score=35.28 Aligned_cols=7 Identities=0% Similarity=-0.182 Sum_probs=3.6
Q ss_pred eeehHHH
Q 041440 57 CCTRVCW 63 (237)
Q Consensus 57 CC~c~~~ 63 (237)
|||++|+
T Consensus 272 ~i~ii~~ 278 (297)
T KOG0810|consen 272 IIIIIIL 278 (297)
T ss_pred eeeehHH
Confidence 6555443
No 44
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.04 E-value=64 Score=24.94 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=11.8
Q ss_pred CceEEEEEEEECCCCe
Q 041440 105 RPRYEFTMKVKNPNEN 120 (237)
Q Consensus 105 s~~~~ltl~~~NPN~k 120 (237)
++-++.++.+.|-|.+
T Consensus 51 ~~~y~y~i~ayn~~Gk 66 (113)
T COG5294 51 SPGYEYTITAYNKNGK 66 (113)
T ss_pred CccceeeehhhccCCc
Confidence 4457789999987753
No 45
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=42.28 E-value=12 Score=24.21 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhheeeEEeecCC
Q 041440 69 FVIGISIGITLVILHKVYSPKG 90 (237)
Q Consensus 69 l~liil~gi~~~il~lv~rP~~ 90 (237)
+.++++.++.++++|.+|+|++
T Consensus 13 ~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHcccc
Confidence 4445555555666666778874
No 46
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=42.07 E-value=26 Score=30.51 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=9.2
Q ss_pred HHHhheeeEEeec
Q 041440 76 GITLVILHKVYSP 88 (237)
Q Consensus 76 gi~~~il~lv~rP 88 (237)
.+++++.|+.|||
T Consensus 236 l~~Ia~aW~~yRP 248 (248)
T PF07787_consen 236 LLTIALAWLFYRP 248 (248)
T ss_pred HHHHHHhheeeCc
Confidence 3455667999987
No 47
>PHA02844 putative transmembrane protein; Provisional
Probab=41.41 E-value=23 Score=25.31 Aligned_cols=24 Identities=21% Similarity=0.128 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhheeeE
Q 041440 61 VCWIILVLFVIGISIGITLVILHK 84 (237)
Q Consensus 61 ~~~~~~~ll~liil~gi~~~il~l 84 (237)
..|.++++++++++++++..++||
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYL 69 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455444444444444445555565
No 48
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=39.98 E-value=11 Score=21.28 Aligned_cols=20 Identities=5% Similarity=0.197 Sum_probs=11.8
Q ss_pred HHHHHHHHhheeeEEeecCC
Q 041440 71 IGISIGITLVILHKVYSPKG 90 (237)
Q Consensus 71 liil~gi~~~il~lv~rP~~ 90 (237)
+++.+++++-.+|..++|++
T Consensus 5 ~~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 5 GIVAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHHHhCccc
Confidence 44455555555666678764
No 49
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=39.88 E-value=64 Score=26.00 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhhee
Q 041440 68 LFVIGISIGITLVIL 82 (237)
Q Consensus 68 ll~liil~gi~~~il 82 (237)
+=++++++|++.+++
T Consensus 45 lG~lvllvGiaMAv~ 59 (141)
T PF10177_consen 45 LGILVLLVGIAMAVL 59 (141)
T ss_pred HHHHHHHHhhHhhee
Confidence 334555666665554
No 50
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=38.51 E-value=17 Score=23.74 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhheeeEEeecCC
Q 041440 69 FVIGISIGITLVILHKVYSPKG 90 (237)
Q Consensus 69 l~liil~gi~~~il~lv~rP~~ 90 (237)
..+++++++.+++++.+|+|+.
T Consensus 14 ~~l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 14 WGLLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHHHhCCCc
Confidence 3444455556666666788864
No 51
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=36.97 E-value=21 Score=36.59 Aligned_cols=18 Identities=11% Similarity=0.241 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhheeeE
Q 041440 67 VLFVIGISIGITLVILHK 84 (237)
Q Consensus 67 ~ll~liil~gi~~~il~l 84 (237)
.+.+++++++++.+|++.
T Consensus 156 ~l~Llvl~i~~ligv~~~ 173 (865)
T KOG4331|consen 156 ELELLVLAIELLIGVFRA 173 (865)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 52
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=36.53 E-value=28 Score=33.61 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=7.8
Q ss_pred cCCCCCCCCceeehHHHH
Q 041440 47 RNPMNKRRNSCCTRVCWI 64 (237)
Q Consensus 47 ~~~~~~~~~~CC~c~~~~ 64 (237)
|+|..+|.++-|||+-|.
T Consensus 72 Rr~~~~~~~~~~~c~s~~ 89 (526)
T KOG4433|consen 72 RRETTGRKRRRVRCLSWS 89 (526)
T ss_pred CCCccCCCCCCcceeeeh
Confidence 444333333333444565
No 53
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=36.25 E-value=27 Score=27.05 Aligned_cols=27 Identities=7% Similarity=0.309 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhheeeEEeec
Q 041440 62 CWIILVLFVIGISIGITLVILHKVYSP 88 (237)
Q Consensus 62 ~~~~~~ll~liil~gi~~~il~lv~rP 88 (237)
++|+..+++|++-++++.++++|+++-
T Consensus 62 lffvglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 62 LFFVGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHheeec
Confidence 333444667777788888888888874
No 54
>PHA02692 hypothetical protein; Provisional
Probab=35.48 E-value=23 Score=25.04 Aligned_cols=9 Identities=33% Similarity=0.748 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 041440 61 VCWIILVLF 69 (237)
Q Consensus 61 ~~~~~~~ll 69 (237)
..|..++++
T Consensus 43 ~~~~~~ii~ 51 (70)
T PHA02692 43 VPWTTVFLI 51 (70)
T ss_pred cchHHHHHH
Confidence 455443333
No 55
>PF15050 SCIMP: SCIMP protein
Probab=35.38 E-value=15 Score=28.81 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhheeeEEee
Q 041440 62 CWIILVLFVIGISIGITLVILHKVYS 87 (237)
Q Consensus 62 ~~~~~~ll~liil~gi~~~il~lv~r 87 (237)
||+++++.+ |++-.+.++|+|.++|
T Consensus 8 FWiiLAVaI-I~vS~~lglIlyCvcR 32 (133)
T PF15050_consen 8 FWIILAVAI-ILVSVVLGLILYCVCR 32 (133)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 787665542 2222234556665554
No 56
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=35.02 E-value=24 Score=28.95 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=11.6
Q ss_pred HHHHHHHhheeeEEeec
Q 041440 72 GISIGITLVILHKVYSP 88 (237)
Q Consensus 72 iil~gi~~~il~lv~rP 88 (237)
++++|+++.++|+.+||
T Consensus 12 l~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 12 LFLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHHhhhhccCC
Confidence 44445444788988997
No 57
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=34.53 E-value=41 Score=25.43 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhheeeEE
Q 041440 65 ILVLFVIGISIGITLVILHKV 85 (237)
Q Consensus 65 ~~~ll~liil~gi~~~il~lv 85 (237)
++.|..+++.+|+.+++++.+
T Consensus 22 LItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 22 LITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555666777777776544
No 58
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=34.22 E-value=1.6e+02 Score=28.73 Aligned_cols=96 Identities=11% Similarity=0.100 Sum_probs=50.8
Q ss_pred cEEEEEEEEEecCCCceEEEEEEEECCCCeeeEEEcCCcEEEEEECCEEeecCCCCCceecCCCeEEEEEEEEEeeecCC
Q 041440 91 AILFIADVHVKNQSRPRYEFTMKVKNPNENVAISYENDGDAFLLLKKKKLASGKFPQLEQEGGDSRNVRITLTGSNTVVP 170 (237)
Q Consensus 91 P~fsV~s~~v~~~~s~~~~ltl~~~NPN~ki~i~Y~~~~~v~v~Y~g~~Lg~g~~p~F~q~~~~tt~v~~~l~~~~~~l~ 170 (237)
-++++.+++++...-.++.++++++| .++.+ +++++.+ |+|..=+.+.+-. ......+++..+++++++.
T Consensus 440 ~~l~~~~l~~~~l~i~~~~~~~~~~~--G~l~l---~~l~~~l-~~G~~~~~~~ld~----~~~~~~~~~~~~~~~v~l~ 509 (604)
T PF05170_consen 440 LTLSAGSLKANGLPISNLKLQLKAKD--GLLTL---DPLSAKL-YGGSLSGSASLDA----RQDPPQYSLNLNLRGVQLQ 509 (604)
T ss_pred EEEEhhheEECCceecccEEEEEecC--CeEEE---eeeeEec-CCcEEEEEEEEec----cCCCccEEEeeeeCCcchH
Confidence 34555555553322234444444444 33333 5577777 8888777776653 2233456666677777665
Q ss_pred hHHHHHhhccccCceEEEEEEEEEEE
Q 041440 171 DEVSKSMHDKKTERAVSLQLEMNLKG 196 (237)
Q Consensus 171 ~~~~~~L~~d~~~g~v~l~v~v~~~v 196 (237)
+-...-...+.-.|...+++.+++.+
T Consensus 510 ~Ll~~~~~~~~l~G~~~~~~~l~g~G 535 (604)
T PF05170_consen 510 PLLQDLALPDPLSGTGDLNLDLTGQG 535 (604)
T ss_pred HHHhhhccccCceEEEEEEEEEEeCC
Confidence 43322222234566666666666554
No 59
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=33.47 E-value=47 Score=22.45 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=11.3
Q ss_pred HHHHHHHhheeeEEeecC
Q 041440 72 GISIGITLVILHKVYSPK 89 (237)
Q Consensus 72 iil~gi~~~il~lv~rP~ 89 (237)
++++.++++++|+.-||+
T Consensus 39 ~~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 39 AAVFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHHHhheeEEeccCC
Confidence 334445566778888874
No 60
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.15 E-value=21 Score=29.05 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhheeeEEeec
Q 041440 61 VCWIILVLFVIGISIGITLVILHKVYSP 88 (237)
Q Consensus 61 ~~~~~~~ll~liil~gi~~~il~lv~rP 88 (237)
+.|+.+++++++++++.++.++|....|
T Consensus 6 ~~~i~ii~viflai~~s~~~~~~~s~~P 33 (161)
T COG5353 6 LIIIIIILVIFLAIILSIALFFWKSMKP 33 (161)
T ss_pred eeeehhHHHHHHHHHHHHHHHHhHhcCc
Confidence 3565555666666777777788887776
No 61
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=33.07 E-value=19 Score=22.29 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=6.5
Q ss_pred HHHHHHhheeeEEe
Q 041440 73 ISIGITLVILHKVY 86 (237)
Q Consensus 73 il~gi~~~il~lv~ 86 (237)
+++-|...|+|+++
T Consensus 19 flv~imliif~f~l 32 (43)
T PF11395_consen 19 FLVIIMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444556544
No 62
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=32.75 E-value=17 Score=32.90 Aligned_cols=22 Identities=14% Similarity=0.230 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhheeeEEee
Q 041440 66 LVLFVIGISIGITLVILHKVYS 87 (237)
Q Consensus 66 ~~ll~liil~gi~~~il~lv~r 87 (237)
++.++.|+++.++.+|+||++|
T Consensus 259 ~aSiiaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 259 IASIIAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666667778888776
No 63
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=32.59 E-value=35 Score=27.86 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=25.6
Q ss_pred HHHHHHHhheeeEEeecCCcEEEEEEEEEecCCCceEEEEEEEECCCCeeeEEE
Q 041440 72 GISIGITLVILHKVYSPKGAILFIADVHVKNQSRPRYEFTMKVKNPNENVAISY 125 (237)
Q Consensus 72 iil~gi~~~il~lv~rP~~P~fsV~s~~v~~~~s~~~~ltl~~~NPN~ki~i~Y 125 (237)
.++++++++++|+..|.+.=.|-=.+-. .+++.++|+.-.++|
T Consensus 61 ~ill~il~lvf~~c~r~kktdfidSdGk-----------vvtay~~n~~~~~w~ 103 (154)
T PF04478_consen 61 PILLGILALVFIFCIRRKKTDFIDSDGK-----------VVTAYRSNKLTKWWY 103 (154)
T ss_pred HHHHHHHHhheeEEEecccCccccCCCc-----------EEEEEcCchHHHHHH
Confidence 3445667777888888876443211111 257888886555555
No 64
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=32.58 E-value=2.8e+02 Score=22.78 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=14.0
Q ss_pred CCeeeEEEcCCcEEEEEECCEE-eecCCC
Q 041440 118 NENVAISYENDGDAFLLLKKKK-LASGKF 145 (237)
Q Consensus 118 N~ki~i~Y~~~~~v~v~Y~g~~-Lg~g~~ 145 (237)
...+.+.| .++-=+++-+|+. +++|.+
T Consensus 88 ~~~v~V~Y-~GilPDlFrEG~gVVveG~~ 115 (160)
T PRK13165 88 GGSVTVTY-EGILPDLFREGQGIVAQGVL 115 (160)
T ss_pred CeEEEEEE-cccCCccccCCCeEEEEEEE
Confidence 44566666 4444445444443 445554
No 65
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=32.32 E-value=83 Score=23.21 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=31.8
Q ss_pred CceEEEEEEEECCCCee--eEEEcCCcEEEEEECCEEeec--CCCCCceecCCCeEEEEEEEE
Q 041440 105 RPRYEFTMKVKNPNENV--AISYENDGDAFLLLKKKKLAS--GKFPQLEQEGGDSRNVRITLT 163 (237)
Q Consensus 105 s~~~~ltl~~~NPN~ki--~i~Y~~~~~v~v~Y~g~~Lg~--g~~p~F~q~~~~tt~v~~~l~ 163 (237)
.-.|++.+++.||...- .+.- .=....++|.|..... -.......+++.+..+.+.+.
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~-~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSL-NLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEE-EEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred CCCEEEEEEEEeCCcCcccccee-EEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 56899999999986531 1111 1144556788876532 223444555666666666554
No 66
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=31.79 E-value=52 Score=30.99 Aligned_cols=9 Identities=22% Similarity=0.855 Sum_probs=4.8
Q ss_pred eeehHHHHH
Q 041440 57 CCTRVCWII 65 (237)
Q Consensus 57 CC~c~~~~~ 65 (237)
-|||.-|.+
T Consensus 58 ~~~c~~~~~ 66 (406)
T PF04906_consen 58 RCCCLTWSL 66 (406)
T ss_pred CCcchHHHH
Confidence 344556664
No 67
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=31.50 E-value=19 Score=21.03 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=11.7
Q ss_pred HHHHHHHHhheeeEEeecCC
Q 041440 71 IGISIGITLVILHKVYSPKG 90 (237)
Q Consensus 71 liil~gi~~~il~lv~rP~~ 90 (237)
.++.+|+.+-.+|.++||++
T Consensus 9 ~~va~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 9 GAVSLGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHHHHHhCccc
Confidence 44455555555566678864
No 68
>KOG3306 consensus Predicted membrane protein [Function unknown]
Probab=31.05 E-value=32 Score=28.62 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=17.5
Q ss_pred CCCCCCCceEEecCcCccccCC
Q 041440 14 EEDYDSNTYVVQVPKDQIYRVP 35 (237)
Q Consensus 14 ~~~~~~~tyv~~~pk~q~y~vp 35 (237)
.+|.+.|||+|+||-.-+...|
T Consensus 34 ~~d~ptgty~V~V~~s~vi~~p 55 (185)
T KOG3306|consen 34 SEDSPTGTYRVEVPSSDVIGHP 55 (185)
T ss_pred cccCCceeEEEEecCcceeecc
Confidence 4688999999999877766643
No 69
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=31.00 E-value=30 Score=30.72 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=10.2
Q ss_pred eEEEEEEEECCCCe
Q 041440 107 RYEFTMKVKNPNEN 120 (237)
Q Consensus 107 ~~~ltl~~~NPN~k 120 (237)
+=+++++++|.|..
T Consensus 87 ~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 87 SRNVTLNARNENGS 100 (264)
T ss_pred cCceEEEEecCCCc
Confidence 34678888888765
No 70
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=30.66 E-value=10 Score=21.66 Aligned_cols=20 Identities=10% Similarity=0.451 Sum_probs=11.4
Q ss_pred HHHHHHHHhheeeEEeecCC
Q 041440 71 IGISIGITLVILHKVYSPKG 90 (237)
Q Consensus 71 liil~gi~~~il~lv~rP~~ 90 (237)
+++.+++++-.+|..+||++
T Consensus 4 ~~l~~~L~~YL~~aLl~PEr 23 (26)
T TIGR02115 4 LVLAVGLFIYLFYALLRPER 23 (26)
T ss_pred HHHHHHHHHHHHHHHhCHHh
Confidence 34445555555566678754
No 71
>PF14221 DUF4330: Domain of unknown function (DUF4330)
Probab=30.63 E-value=3e+02 Score=22.51 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhheeeEEee
Q 041440 69 FVIGISIGITLVILHKVYS 87 (237)
Q Consensus 69 l~liil~gi~~~il~lv~r 87 (237)
++++++++++++++|....
T Consensus 20 ~~~lvvl~v~~g~~~~~~~ 38 (168)
T PF14221_consen 20 LAILVVLAVVVGIFWKPGL 38 (168)
T ss_pred HHHHHHHHHhheeEEEecc
Confidence 4455555667777776555
No 72
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=30.61 E-value=58 Score=20.34 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhheeeEEeecC
Q 041440 61 VCWIILVLFVIGISIGITLVILHKVYSPK 89 (237)
Q Consensus 61 ~~~~~~~ll~liil~gi~~~il~lv~rP~ 89 (237)
..|++ +++++-+++.++|++++.+
T Consensus 23 ~~W~~-----~i~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 23 ILWLI-----VILFFPIIGPILYLIFGRK 46 (46)
T ss_pred hHHHH-----HHHHHHHHHHhheEEEeCC
Confidence 57863 3344667778888888753
No 73
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=30.20 E-value=3.1e+02 Score=22.45 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=26.4
Q ss_pred CCeeeEEEcCCcEEEEEECCEE-eecCCCCCceecCCCeEEEEE-EEEE--eeecCChHHHHHhhcc
Q 041440 118 NENVAISYENDGDAFLLLKKKK-LASGKFPQLEQEGGDSRNVRI-TLTG--SNTVVPDEVSKSMHDK 180 (237)
Q Consensus 118 N~ki~i~Y~~~~~v~v~Y~g~~-Lg~g~~p~F~q~~~~tt~v~~-~l~~--~~~~l~~~~~~~L~~d 180 (237)
+..+.+.| .++-=+++-.|+. +++|.+. + + ++.+ ++-. +..-.++++.++|+..
T Consensus 82 ~~~v~V~Y-~GilPDlFrEGqgVVaeG~~~----~--g--~F~A~~vLAKHde~YmP~Ev~~al~~~ 139 (155)
T PRK13159 82 NAATQVEY-TGILPDLFRDNQSVIANGRMQ----G--G--RFVANEVLAKHDETYMPKELKDAMAEG 139 (155)
T ss_pred CcEEEEEE-ccCCCccccCCCeEEEEEEEc----C--C--EEEEeEEEecCCCcCCCHHHHHHHHhc
Confidence 44566666 5544445444443 4555543 1 1 2222 2222 2234677777777654
No 74
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=29.88 E-value=68 Score=24.05 Aligned_cols=14 Identities=21% Similarity=0.017 Sum_probs=5.9
Q ss_pred HHHHHHhheeeEEe
Q 041440 73 ISIGITLVILHKVY 86 (237)
Q Consensus 73 il~gi~~~il~lv~ 86 (237)
.++.++.+|.|+++
T Consensus 73 ~IlVily~IyYFVI 86 (101)
T PF06024_consen 73 CILVILYAIYYFVI 86 (101)
T ss_pred HHHHHHhhheEEEE
Confidence 33333444555443
No 75
>PHA03049 IMV membrane protein; Provisional
Probab=29.58 E-value=22 Score=24.87 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhheeeEEee
Q 041440 68 LFVIGISIGITLVILHKVYS 87 (237)
Q Consensus 68 ll~liil~gi~~~il~lv~r 87 (237)
++++++-++++++|+|-+|+
T Consensus 5 ~~l~iICVaIi~lIvYgiYn 24 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44556666777788887775
No 76
>PHA03278 envelope glycoprotein K; Provisional
Probab=28.95 E-value=64 Score=29.79 Aligned_cols=13 Identities=15% Similarity=0.470 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhhe
Q 041440 69 FVIGISIGITLVI 81 (237)
Q Consensus 69 l~liil~gi~~~i 81 (237)
+=+++++|+++.+
T Consensus 317 lYva~i~~~Vv~~ 329 (347)
T PHA03278 317 LYLLFIIGLVVLL 329 (347)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555554443
No 77
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=28.62 E-value=51 Score=33.84 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=13.3
Q ss_pred ehHHHHHHHHHHHHHHHHHHhhe
Q 041440 59 TRVCWIILVLFVIGISIGITLVI 81 (237)
Q Consensus 59 ~c~~~~~~~ll~liil~gi~~~i 81 (237)
.+++.++++++++++++|++.++
T Consensus 139 R~~l~~~L~~~~~~il~g~i~aF 161 (806)
T PF05478_consen 139 RGCLGILLLLLTLIILFGVICAF 161 (806)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666677766543
No 78
>PF02723 NS3_envE: Non-structural protein NS3/Small envelope protein E; InterPro: IPR003873 This is a family of small nonstructural proteins, well conserved among Coronavirus strains. This protein is also found in Murine hepatitis virus as small envelope protein E.; GO: 0016020 membrane
Probab=28.00 E-value=70 Score=23.37 Aligned_cols=19 Identities=21% Similarity=0.642 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 041440 61 VCWIILVLFVIGISIGITL 79 (237)
Q Consensus 61 ~~~~~~~ll~liil~gi~~ 79 (237)
++|+++.++++++.++++.
T Consensus 17 il~llvc~~~liv~~AlL~ 35 (82)
T PF02723_consen 17 ILWLLVCLVVLIVCIALLQ 35 (82)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5777665555555554443
No 79
>COG3462 Predicted membrane protein [Function unknown]
Probab=27.53 E-value=71 Score=24.66 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhheee
Q 041440 61 VCWIILVLFVIGISIGITLVILH 83 (237)
Q Consensus 61 ~~~~~~~ll~liil~gi~~~il~ 83 (237)
+.|+++.++.++..++++-.++|
T Consensus 8 ~~w~ligliavi~~v~li~~~~~ 30 (117)
T COG3462 8 FAWLLIGLIAVIAVVGLIPSGFH 30 (117)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc
Confidence 68888777777777777666554
No 80
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=27.29 E-value=25 Score=24.71 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhheeeEEee
Q 041440 68 LFVIGISIGITLVILHKVYS 87 (237)
Q Consensus 68 ll~liil~gi~~~il~lv~r 87 (237)
++++++-++++++|+|-+|.
T Consensus 5 ~iLi~ICVaii~lIlY~iYn 24 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44455666677778887775
No 81
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=27.16 E-value=30 Score=23.79 Aligned_cols=15 Identities=13% Similarity=0.242 Sum_probs=9.0
Q ss_pred HHHhheeeEEeecCC
Q 041440 76 GITLVILHKVYSPKG 90 (237)
Q Consensus 76 gi~~~il~lv~rP~~ 90 (237)
....+++|.+|||+.
T Consensus 20 l~fiavi~~ayr~~~ 34 (60)
T COG4736 20 LFFIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHHHhcccc
Confidence 334445567788863
No 82
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=26.75 E-value=35 Score=20.61 Aligned_cols=13 Identities=0% Similarity=0.209 Sum_probs=6.2
Q ss_pred HHHHHHHHhheee
Q 041440 71 IGISIGITLVILH 83 (237)
Q Consensus 71 liil~gi~~~il~ 83 (237)
.+.+++++.+++|
T Consensus 11 vv~iLt~~ILvFW 23 (34)
T PF08113_consen 11 VVMILTAFILVFW 23 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHH
Confidence 3444445555554
No 83
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.64 E-value=36 Score=31.55 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhheeeEEee
Q 041440 62 CWIILVLFVIGISIGITLVILHKVYS 87 (237)
Q Consensus 62 ~~~~~~ll~liil~gi~~~il~lv~r 87 (237)
.|+++++|+|+|+=.|+.+|.|+++.
T Consensus 226 ~gfl~~IlvLaIvRlILF~I~~il~~ 251 (372)
T KOG2927|consen 226 GGFLAFILVLAIVRLILFGITWILTG 251 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45555566666666666666777665
No 84
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.39 E-value=1.4e+02 Score=27.46 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=23.4
Q ss_pred EEEEEECCEEeecCCCCCceecCCCeEEEEEEEEEeeecCChHHHHHhhc
Q 041440 130 DAFLLLKKKKLASGKFPQLEQEGGDSRNVRITLTGSNTVVPDEVSKSMHD 179 (237)
Q Consensus 130 ~v~v~Y~g~~Lg~g~~p~F~q~~~~tt~v~~~l~~~~~~l~~~~~~~L~~ 179 (237)
-..|.|+|..+|+..-=.+.. ..+...+.+.+..+ ..++.+....+..
T Consensus 56 gs~V~~~GV~VG~V~~I~~~~-~~~~~~v~~~id~~-~~Ip~~s~A~I~~ 103 (359)
T COG1463 56 GSPVRYRGVKVGKVASISLDP-KPNGARVTLEIDSD-YPIPADSTASIRT 103 (359)
T ss_pred CCceEEcCEEeEEEEEEEecC-CCCceEEEEEecCC-cccCCCceeeeee
Confidence 446778999998764111111 23333444444422 3555544444443
No 85
>PF15394 DUF4616: Domain of unknown function (DUF4616)
Probab=26.26 E-value=30 Score=32.49 Aligned_cols=10 Identities=30% Similarity=1.062 Sum_probs=6.2
Q ss_pred CCCceeehHH
Q 041440 53 RRNSCCTRVC 62 (237)
Q Consensus 53 ~~~~CC~c~~ 62 (237)
...+||||-|
T Consensus 14 ~eakcccCaC 23 (537)
T PF15394_consen 14 SEAKCCCCAC 23 (537)
T ss_pred Cccceeeeec
Confidence 3346888854
No 86
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=25.73 E-value=2.2e+02 Score=21.49 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=17.7
Q ss_pred EEEEEEECCCCeeeEEEcCCcEEEEEECC
Q 041440 109 EFTMKVKNPNENVAISYENDGDAFLLLKK 137 (237)
Q Consensus 109 ~ltl~~~NPN~ki~i~Y~~~~~v~v~Y~g 137 (237)
+=++.+.-+.....+.. +++.+.+...+
T Consensus 49 ~~~i~i~~~~g~~~i~i-~~g~vrv~~s~ 76 (113)
T PF07009_consen 49 DKTIEIDGDGGYNTIEI-KDGKVRVIESD 76 (113)
T ss_dssp EEEEEEETTTCEEEEEE-ETTEEEEEEES
T ss_pred CEEEEEecCCcEEEEEE-ECCEEEEEECC
Confidence 44455566666667777 66777777643
No 87
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.73 E-value=27 Score=27.44 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=8.6
Q ss_pred HHHHHhheeeEEee-cCCcEEEEEE
Q 041440 74 SIGITLVILHKVYS-PKGAILFIAD 97 (237)
Q Consensus 74 l~gi~~~il~lv~r-P~~P~fsV~s 97 (237)
++|++++|+|++-| =|.+...++.
T Consensus 77 vIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 77 VIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCC
Confidence 45556666676654 3455555554
No 88
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=25.51 E-value=49 Score=25.31 Aligned_cols=24 Identities=8% Similarity=0.483 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHh-heeeEEe
Q 041440 63 WIILVLFVIGISIGITL-VILHKVY 86 (237)
Q Consensus 63 ~~~~~ll~liil~gi~~-~il~lv~ 86 (237)
|++++++.+++++.+++ ++.|...
T Consensus 1 w~Ll~il~llLll~l~asl~~wr~~ 25 (107)
T PF15330_consen 1 WLLLGILALLLLLSLAASLLAWRMK 25 (107)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544444444333 3345433
No 89
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.48 E-value=26 Score=27.49 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=3.9
Q ss_pred HHHHHHhhee
Q 041440 73 ISIGITLVIL 82 (237)
Q Consensus 73 il~gi~~~il 82 (237)
+++|+++.|+
T Consensus 73 v~aGvIg~Il 82 (122)
T PF01102_consen 73 VMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344433333
No 90
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=25.15 E-value=88 Score=29.71 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=12.0
Q ss_pred CCCCceeehHHHHHHHHHHHHHHHHHHh
Q 041440 52 KRRNSCCTRVCWIILVLFVIGISIGITL 79 (237)
Q Consensus 52 ~~~~~CC~c~~~~~~~ll~liil~gi~~ 79 (237)
+|+.+|| |..|+++ +++++..+|+++
T Consensus 74 ~k~~s~~-c~~~sLi-iltL~~~aaIi~ 99 (418)
T cd07912 74 RPRHSIC-CLKWSLV-IATLLCCAAIGV 99 (418)
T ss_pred CCCCCcc-HHHHHHH-HHHHHHHHHHHH
Confidence 3344455 6666543 333334444443
No 91
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=24.92 E-value=49 Score=29.62 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=4.1
Q ss_pred CCCCceeeh
Q 041440 52 KRRNSCCTR 60 (237)
Q Consensus 52 ~~~~~CC~c 60 (237)
||.++|-.|
T Consensus 254 rrt~k~~~~ 262 (283)
T COG5325 254 RRTKKCRFY 262 (283)
T ss_pred hhhccchhh
Confidence 444455433
No 92
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=24.79 E-value=91 Score=17.77 Aligned_cols=11 Identities=36% Similarity=0.356 Sum_probs=4.5
Q ss_pred HHHHHHHhhee
Q 041440 72 GISIGITLVIL 82 (237)
Q Consensus 72 iil~gi~~~il 82 (237)
.+++++.++++
T Consensus 16 ~lv~~iTGl~l 26 (27)
T PF03929_consen 16 MLVFAITGLIL 26 (27)
T ss_pred HHHHHHHHHHh
Confidence 33444444433
No 93
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=24.74 E-value=84 Score=27.60 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=23.0
Q ss_pred HHHHHHHhheeeEEeecCCcEEEEEEEEEec
Q 041440 72 GISIGITLVILHKVYSPKGAILFIADVHVKN 102 (237)
Q Consensus 72 iil~gi~~~il~lv~rP~~P~fsV~s~~v~~ 102 (237)
++++++.++++|....++.|-|.+..+.|++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~G 69 (269)
T COG1589 39 LVLLLLVLVVLWVLILLSLPYFPIRKVSVSG 69 (269)
T ss_pred HHHHHHHHHHHheehhhhcCCccceEEEEec
Confidence 3344455666777788889999999999953
No 94
>PF14927 Neurensin: Neurensin
Probab=24.50 E-value=1.5e+02 Score=23.78 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=6.0
Q ss_pred HHHHHHHHhhee
Q 041440 71 IGISIGITLVIL 82 (237)
Q Consensus 71 liil~gi~~~il 82 (237)
+++++|++++++
T Consensus 53 l~Ll~Gi~~l~v 64 (140)
T PF14927_consen 53 LLLLLGIVALTV 64 (140)
T ss_pred HHHHHHHHHHHh
Confidence 344555555444
No 95
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=24.44 E-value=94 Score=25.36 Aligned_cols=22 Identities=0% Similarity=-0.123 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhheeeEEee
Q 041440 66 LVLFVIGISIGITLVILHKVYS 87 (237)
Q Consensus 66 ~~ll~liil~gi~~~il~lv~r 87 (237)
+++++|++|+...++.+|-+=|
T Consensus 14 igi~Ll~lLl~cgiGcvwhwkh 35 (158)
T PF11770_consen 14 IGISLLLLLLLCGIGCVWHWKH 35 (158)
T ss_pred HHHHHHHHHHHHhcceEEEeec
Confidence 3444444555556666776555
No 96
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=24.36 E-value=1.5e+02 Score=24.92 Aligned_cols=14 Identities=0% Similarity=-0.073 Sum_probs=11.4
Q ss_pred ecCCcEEEEEEEEE
Q 041440 87 SPKGAILFIADVHV 100 (237)
Q Consensus 87 rP~~P~fsV~s~~v 100 (237)
.++.|.|..++++.
T Consensus 37 ~~~~Pdy~~~~~~~ 50 (192)
T PRK10893 37 NNNDPTYQSQHTDT 50 (192)
T ss_pred CCCCCCEEEeccEE
Confidence 46779999998886
No 97
>KOG1773 consensus Stress responsive protein [General function prediction only]
Probab=23.85 E-value=1.8e+02 Score=20.12 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=20.6
Q ss_pred CceeehHHHHHHHHHHHHHHHHHHhheeeEEeecCC
Q 041440 55 NSCCTRVCWIILVLFVIGISIGITLVILHKVYSPKG 90 (237)
Q Consensus 55 ~~CC~c~~~~~~~ll~liil~gi~~~il~lv~rP~~ 90 (237)
++||..=+|..+.+.+|.++=|++=++.+..++++.
T Consensus 26 ~g~C~~~~~InilL~~L~~iPgiIhA~yii~~~~r~ 61 (63)
T KOG1773|consen 26 RGGCTVDVLINILLTLLGFIPGIIHAIYIIFFRGRE 61 (63)
T ss_pred cCCCchhhHHHHHHHHHHHhHHHHhhEEEEEEecCC
Confidence 356654344444455556667777666666666653
No 98
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.62 E-value=82 Score=27.41 Aligned_cols=14 Identities=21% Similarity=-0.017 Sum_probs=5.9
Q ss_pred HHHHHHhheeeEEe
Q 041440 73 ISIGITLVILHKVY 86 (237)
Q Consensus 73 il~gi~~~il~lv~ 86 (237)
++++++++++|++.
T Consensus 248 ~~~~~~~~~~~~~~ 261 (262)
T PF14257_consen 248 PLILIIGLLVRFVR 261 (262)
T ss_pred HHHHHHHHHHheEe
Confidence 33344444444443
No 99
>PRK13836 conjugal transfer protein TrbF; Provisional
Probab=23.52 E-value=88 Score=26.66 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhheeeEEeec
Q 041440 61 VCWIILVLFVIGISIGITLVILHKVYSP 88 (237)
Q Consensus 61 ~~~~~~~ll~liil~gi~~~il~lv~rP 88 (237)
..|.+++++.+++.++.+++++|+.-+.
T Consensus 30 ~~W~~~a~~~l~~a~~~v~~~~~l~~~~ 57 (220)
T PRK13836 30 AAWRIVGILGLTMAVIGFGYALYQSTQV 57 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4787776655555555556666765543
No 100
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=23.04 E-value=1.3e+02 Score=18.63 Aligned_cols=12 Identities=33% Similarity=0.653 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 041440 62 CWIILVLFVIGI 73 (237)
Q Consensus 62 ~~~~~~ll~lii 73 (237)
-|++..+..+++
T Consensus 15 ~Wi~F~l~mi~v 26 (38)
T PF09125_consen 15 GWIAFALAMILV 26 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 576555543333
No 101
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=22.82 E-value=29 Score=26.68 Aligned_cols=13 Identities=8% Similarity=-0.187 Sum_probs=7.4
Q ss_pred HHhheeeEEeecC
Q 041440 77 ITLVILHKVYSPK 89 (237)
Q Consensus 77 i~~~il~lv~rP~ 89 (237)
+++++.|+.+||.
T Consensus 13 i~~i~yF~~iRPQ 25 (109)
T PRK05886 13 IMGGFMYFASRRQ 25 (109)
T ss_pred HHHHHHHHHccHH
Confidence 3344445667885
No 102
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=22.25 E-value=40 Score=22.35 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=7.7
Q ss_pred CCCCCceEEecC
Q 041440 16 DYDSNTYVVQVP 27 (237)
Q Consensus 16 ~~~~~tyv~~~p 27 (237)
.++||+|.++|-
T Consensus 35 ~L~~G~Y~l~V~ 46 (66)
T PF07495_consen 35 NLPPGKYTLEVR 46 (66)
T ss_dssp S--SEEEEEEEE
T ss_pred eCCCEEEEEEEE
Confidence 568899988763
No 103
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=22.04 E-value=1.8e+02 Score=20.33 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=25.9
Q ss_pred CceEEEEEEEECCCCeeeEEEcCCcEEEEEECCEEeecCCCCCce
Q 041440 105 RPRYEFTMKVKNPNENVAISYENDGDAFLLLKKKKLASGKFPQLE 149 (237)
Q Consensus 105 s~~~~ltl~~~NPN~ki~i~Y~~~~~v~v~Y~g~~Lg~g~~p~F~ 149 (237)
.-.+.++++++|.=.. . - +...+.++.+|..++...++.+.
T Consensus 18 g~~~~i~~~V~N~G~~-~--~-~~~~v~~~~~~~~~~~~~i~~L~ 58 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTA-D--A-ENVTVRLYLDGNSVSTVTIPSLA 58 (101)
T ss_dssp TSEEEEEEEEEE-SSS----B-EEEEEEEEETTEEEEEEEESEB-
T ss_pred CCEEEEEEEEEECCCC-C--C-CCEEEEEEECCceeccEEECCcC
Confidence 5678888999994321 1 1 45677787788888665554444
No 104
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=22.00 E-value=97 Score=29.15 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=7.5
Q ss_pred CceEEEEEEEECC
Q 041440 105 RPRYEFTMKVKNP 117 (237)
Q Consensus 105 s~~~~ltl~~~NP 117 (237)
+..+|+|.++++-
T Consensus 85 tkeLN~t~~~K~~ 97 (442)
T PF06637_consen 85 TKELNLTTRAKDA 97 (442)
T ss_pred HHHhchhHHHHHH
Confidence 4566666655543
No 105
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=21.41 E-value=85 Score=25.69 Aligned_cols=15 Identities=7% Similarity=0.096 Sum_probs=9.0
Q ss_pred eeEEee---cCCcEEEEE
Q 041440 82 LHKVYS---PKGAILFIA 96 (237)
Q Consensus 82 l~lv~r---P~~P~fsV~ 96 (237)
.|..-+ |+.|++++-
T Consensus 23 ~~~~~~~~~p~~p~It~~ 40 (161)
T PF10969_consen 23 WWQLRRGSDPQDPEITAY 40 (161)
T ss_pred HHHhCCCCCCCCcEEEEE
Confidence 455443 567777765
No 106
>PF01186 Lysyl_oxidase: Lysyl oxidase ; InterPro: IPR001695 Lysyl oxidase (1.4.3.13 from EC) (LOX) [] is an extracellular copper-dependent enzyme that catalyses the oxidative deamination of peptidyl lysine residues in precursors of various collagens and elastins, yielding alpha-aminoadipic-delta-semialdehyde. The deaminated lysines are then able to form semialdehyde cross-links, resulting in the formation of insoluble collagen and elastin fibres in the extracellular matrix []. The active site of LOX resides towards the C terminus: this region also binds a single copper atom in an octahedral coordination complex involving at least 3 His residues []. Four histidine residues are clustered in a central region of the enzyme. This region is thought to be involved in cooper-binding and is called the 'copper-talon' [].; GO: 0005507 copper ion binding, 0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor, 0055114 oxidation-reduction process
Probab=21.20 E-value=64 Score=27.62 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=16.7
Q ss_pred CCCCCCCceEEecCcCccccCC
Q 041440 14 EEDYDSNTYVVQVPKDQIYRVP 35 (237)
Q Consensus 14 ~~~~~~~tyv~~~pk~q~y~vp 35 (237)
--|++||+|++||--+.-+.++
T Consensus 154 ITdvp~G~Y~l~V~vNP~~~v~ 175 (205)
T PF01186_consen 154 ITDVPPGTYILQVTVNPEYRVA 175 (205)
T ss_pred ecCCCCccEEEEEecCCccccc
Confidence 3478899999999776666654
No 107
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=21.12 E-value=93 Score=27.54 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 041440 62 CWIILVLFVIGISIGITLV 80 (237)
Q Consensus 62 ~~~~~~ll~liil~gi~~~ 80 (237)
++++++++++++.+|++++
T Consensus 200 ~f~llgllfliiaigltvG 218 (256)
T PF09788_consen 200 IFFLLGLLFLIIAIGLTVG 218 (256)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3444455555555555544
No 108
>PF11606 AlcCBM31: Family 31 carbohydrate binding protein; InterPro: IPR021016 Beta-1,3-xylan is a homopolymer of b-1,3-linked D-xylose and is a polysaccharide peculiar to marine algae. Beta-1,3-xylanase is a beta-1,3-xylan hydrolyzing enzyme [].; GO: 0033905 xylan endo-1,3-beta-xylosidase activity; PDB: 2COV_F.
Probab=20.82 E-value=70 Score=23.57 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=20.0
Q ss_pred ECCCCeeeEEEcCCcEEEEEECCEE
Q 041440 115 KNPNENVAISYENDGDAFLLLKKKK 139 (237)
Q Consensus 115 ~NPN~ki~i~Y~~~~~v~v~Y~g~~ 139 (237)
+|++...++.|.++.++.|++.+..
T Consensus 4 e~c~~dFg~~Yvsds~ievfH~d~g 28 (93)
T PF11606_consen 4 ENCSEDFGYNYVSDSEIEVFHKDNG 28 (93)
T ss_dssp GGGTSSEEEEEEETTEEEEEEE---
T ss_pred CCcchhhCeeeecCceEEEEEecCC
Confidence 5789999999998999999987663
No 109
>PF07184 CTV_P33: Citrus tristeza virus P33 protein; InterPro: IPR010803 This family consists of several Citrus tristeza virus (CTV) P33 proteins. The function of P33 is unclear although it is known that the protein is not needed for virion formation [].
Probab=20.79 E-value=76 Score=27.22 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=14.1
Q ss_pred CCceEEecCcCccccCCCCCCc
Q 041440 19 SNTYVVQVPKDQIYRVPPPENA 40 (237)
Q Consensus 19 ~~tyv~~~pk~q~y~vppp~~~ 40 (237)
+|.-.|.+|.-.+...-.|+-|
T Consensus 242 agnvavtvpntplv~avspyva 263 (303)
T PF07184_consen 242 AGNVAVTVPNTPLVSAVSPYVA 263 (303)
T ss_pred ccceEEecCCCccccccChhhh
Confidence 4446677887777665566554
No 110
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.78 E-value=1.1e+02 Score=21.88 Aligned_cols=19 Identities=5% Similarity=0.230 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhhe
Q 041440 63 WIILVLFVIGISIGITLVI 81 (237)
Q Consensus 63 ~~~~~ll~liil~gi~~~i 81 (237)
|++.+.+++++++|+.++.
T Consensus 4 ~lltFg~Fllvi~gMsiG~ 22 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGY 22 (77)
T ss_pred HHHHHHHHHHHHHHHhHhh
Confidence 4444445555566665554
No 111
>PF10614 CsgF: Type VIII secretion system (T8SS), CsgF protein; InterPro: IPR018893 Fimbriae are cell-surface protein polymers, of e.g. Escherichia coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp. and the controlling operon termed agf; however subsequent isolation of the homologous operon in E. coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix []. CsgF is one of three putative curli assembly factors appearing to act as a nucleator protein. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery [].
Probab=20.40 E-value=59 Score=26.22 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=12.4
Q ss_pred HhheeeEEeecCCcEEE
Q 041440 78 TLVILHKVYSPKGAILF 94 (237)
Q Consensus 78 ~~~il~lv~rP~~P~fs 94 (237)
.+.+-=|+|+|..|.|-
T Consensus 18 ~a~A~eLVY~PvNPsFG 34 (142)
T PF10614_consen 18 SAQAQELVYTPVNPSFG 34 (142)
T ss_pred ccchhheEeeccCCCCC
Confidence 34444589999999874
No 112
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=20.27 E-value=81 Score=24.03 Aligned_cols=7 Identities=14% Similarity=0.700 Sum_probs=3.5
Q ss_pred HHHHHHH
Q 041440 62 CWIILVL 68 (237)
Q Consensus 62 ~~~~~~l 68 (237)
+|+++.+
T Consensus 68 F~L~~~~ 74 (103)
T PF12955_consen 68 FWLFAGF 74 (103)
T ss_pred hhHHHHH
Confidence 5655433
Done!