Query 041440
Match_columns 237
No_of_seqs 184 out of 789
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:47:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.2 1.5E-05 5.1E-10 65.2 12.0 101 89-196 43-147 (174)
2 3but_A Uncharacterized protein 98.0 3.8E-05 1.3E-09 60.4 10.3 74 104-179 16-90 (136)
3 1xo8_A AT1G01470; structural g 98.0 4.9E-06 1.7E-10 66.6 4.4 102 89-196 20-124 (151)
4 3me0_B PAPG protein; immunoglo 43.1 31 0.0011 26.2 4.4 83 86-169 9-112 (128)
5 2knc_B Integrin beta-3; transm 39.8 16 0.00055 25.4 2.2 23 62-84 11-33 (79)
6 2k9j_B Integrin beta-3; transm 29.8 35 0.0012 20.8 2.3 22 62-83 10-31 (43)
7 3hd7_A Vesicle-associated memb 27.1 45 0.0015 23.5 2.9 17 63-79 71-87 (91)
8 2l6w_A Beta-type platelet-deri 30.9 15 0.00052 22.1 0.0 6 88-93 33-38 (39)
9 3kdp_B Sodium/potassium-transp 20.4 23 0.00078 30.6 0.2 24 74-98 29-55 (286)
10 4dkx_A RAS-related protein RAB 19.1 24 0.00081 28.5 0.0 15 47-61 195-209 (216)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.23 E-value=1.5e-05 Score=65.24 Aligned_cols=101 Identities=20% Similarity=0.243 Sum_probs=78.2
Q ss_pred CCcEEEEEEEEEec--CCCceEEEEEEEECCCCeeeEEEcCCcEEEEEECCEEeecCCCCC-ceecCCCeEEEEEEEEEe
Q 041440 89 KGAILFIADVHVKN--QSRPRYEFTMKVKNPNENVAISYENDGDAFLLLKKKKLASGKFPQ-LEQEGGDSRNVRITLTGS 165 (237)
Q Consensus 89 ~~P~fsV~s~~v~~--~~s~~~~ltl~~~NPN~ki~i~Y~~~~~v~v~Y~g~~Lg~g~~p~-F~q~~~~tt~v~~~l~~~ 165 (237)
+.|++++.++++.. .....|.++|+++|||. ..+-+ .+++..+.-+|..|++|..+. +..++++++.+.+.++..
T Consensus 43 ~~PeV~v~~v~~~~~~l~~~~~~l~LrV~NPN~-~pLpi-~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv~v~ 120 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRDGVDYHAKVSVKNPYS-QSIPI-CQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKVA 120 (174)
T ss_dssp CCCEEEEEEEEEEEECSSSEEEEEEEEEEECSS-SCCBC-CSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEEES
T ss_pred CCCEEEEEEeEEeccccceEEEEEEEEEECCCC-CCccc-cceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEEEEE
Confidence 67999999999843 34788999999999996 79999 999999999999999999865 889999999999988764
Q ss_pred eecCChHHHHHhhccc-cCceEEEEEEEEEEE
Q 041440 166 NTVVPDEVSKSMHDKK-TERAVSLQLEMNLKG 196 (237)
Q Consensus 166 ~~~l~~~~~~~L~~d~-~~g~v~l~v~v~~~v 196 (237)
- ... .++..+. ..+.++.++++...+
T Consensus 121 ~----~~l-~~~~~~l~~~~~i~Y~L~g~L~i 147 (174)
T 1yyc_A 121 Y----SIA-VSLMKDMCTDWDIDYQLDIGLTF 147 (174)
T ss_dssp H----HHH-HHTCCCCCSSEEECEEEEEEEEE
T ss_pred H----HHH-HHHHHhcCCCCccceEEEEEEEe
Confidence 2 122 2333443 445566666654443
No 2
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.04 E-value=3.8e-05 Score=60.37 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=63.1
Q ss_pred CCceEEEEEEEECCCCeeeEEEcCCcEEEEEECCEEeecCC-CCCceecCCCeEEEEEEEEEeeecCChHHHHHhhc
Q 041440 104 SRPRYEFTMKVKNPNENVAISYENDGDAFLLLKKKKLASGK-FPQLEQEGGDSRNVRITLTGSNTVVPDEVSKSMHD 179 (237)
Q Consensus 104 ~s~~~~ltl~~~NPN~ki~i~Y~~~~~v~v~Y~g~~Lg~g~-~p~F~q~~~~tt~v~~~l~~~~~~l~~~~~~~L~~ 179 (237)
....|.+.|++.|||. +.+.+ ++++..++.+|..+|+|. ...+..++.+++.+.+.+..+...+.+...+-+++
T Consensus 16 ~~t~~~~~l~V~NPN~-~~l~i-~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~~~~hi~n 90 (136)
T 3but_A 16 SQTEIVALAKVRNEDV-VPIVV-SGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIAN 90 (136)
T ss_dssp SEEEEEEEEEEECCSS-SCEEE-EEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTHHHHHHHT
T ss_pred cEEEEEEEEEEeCCCC-cceee-eceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHHHHHHhhc
Confidence 4688999999999996 79999 899999999999999998 57899999999999999988876676655555543
No 3
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=97.99 E-value=4.9e-06 Score=66.57 Aligned_cols=102 Identities=15% Similarity=0.221 Sum_probs=76.6
Q ss_pred CCcEEEEEEEEEecC--CCceEEEEEEEECCCCeeeEEEcCCcEEEEEECCEEeecCCCCC-ceecCCCeEEEEEEEEEe
Q 041440 89 KGAILFIADVHVKNQ--SRPRYEFTMKVKNPNENVAISYENDGDAFLLLKKKKLASGKFPQ-LEQEGGDSRNVRITLTGS 165 (237)
Q Consensus 89 ~~P~fsV~s~~v~~~--~s~~~~ltl~~~NPN~ki~i~Y~~~~~v~v~Y~g~~Lg~g~~p~-F~q~~~~tt~v~~~l~~~ 165 (237)
+.|++++.++++... ....|.++|+++|||. ..+.+ .+++..+.-+|..+++|..+. +..++++++.+.+.++..
T Consensus 20 ~~P~v~v~~v~~~~~~~~~~~~~~~l~V~NPN~-~~lpi-~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vpv~v~ 97 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYS-HSIPI-CEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVVVP 97 (151)
T ss_dssp CSCCCBCSEEEECCCTTTEECEEEEEEEECSSS-SCCCC-EEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECCCEE
T ss_pred CCCEEEEEEeEEeccCcceeEEEEEEEEECCCC-CCccc-ccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEEEEEE
Confidence 679999999999532 4678999999999996 79999 889999999999999998864 888999999999887765
Q ss_pred eecCChHHHHHhhccccCceEEEEEEEEEEE
Q 041440 166 NTVVPDEVSKSMHDKKTERAVSLQLEMNLKG 196 (237)
Q Consensus 166 ~~~l~~~~~~~L~~d~~~g~v~l~v~v~~~v 196 (237)
-..+- ..+..+ ...+.++.+++++..+
T Consensus 98 ~~~l~-~~~~~l---~~~~~i~Y~l~g~l~i 124 (151)
T 1xo8_A 98 YSILF-NLARDV---GVDWDIDYELQIGLTI 124 (151)
T ss_dssp HHHHH-HHHHHH---HHHSEEEEEEEEEEEE
T ss_pred HHHHH-HHHHhc---ccCCcccEEEEEEEEE
Confidence 32121 111222 2345677766665543
No 4
>3me0_B PAPG protein; immunoglobulin pilin chaperone, chaperone, fimbrium, immunog domain; HET: MSE; 2.03A {Escherichia coli} PDB: 2wmp_B
Probab=43.08 E-value=31 Score=26.20 Aligned_cols=83 Identities=10% Similarity=0.133 Sum_probs=49.1
Q ss_pred eecCCcEEEEEEEEEecC-----------C---CceEEEEEEEEC---C---C-CeeeEEEcCCcEEEEEECCEEeecCC
Q 041440 86 YSPKGAILFIADVHVKNQ-----------S---RPRYEFTMKVKN---P---N-ENVAISYENDGDAFLLLKKKKLASGK 144 (237)
Q Consensus 86 ~rP~~P~fsV~s~~v~~~-----------~---s~~~~ltl~~~N---P---N-~ki~i~Y~~~~~v~v~Y~g~~Lg~g~ 144 (237)
.||..|.+.++.-.+... + +...++.+.+.. | | .+..+--++++...++-+|+..++..
T Consensus 9 ~~~~~~~l~IdHG~ls~~~a~Gnt~~~~isV~Ct~p~~Vki~lt~~~~p~~~~~~~f~V~L~ngl~S~l~lNG~~~~e~~ 88 (128)
T 3me0_B 9 CRPSAQSLEIKHGDLSINSANNHYAAQTLSVSCDVPANIRFMLLRNTTPTYSHGKKFSVGLGHGWDSIVSVNGVDTGETT 88 (128)
T ss_dssp EEECCSCCEEECCCSSSSCCSSCEEEEEEEEEESSCEEEEEEEEECSCCSSCCTTSCEEEEETTEEEEEEETTBCSSEEE
T ss_pred cCCCCCceecccceechhhcCCCEEeeEEEEEeCCCceEEEEEecCCcccccccCceEEecCCCeEEEEEECCeecccee
Confidence 389999999997777421 0 344455554432 1 1 33344445678888888999888777
Q ss_pred CCCceecCCCeEEEEEEEEEeeecC
Q 041440 145 FPQLEQEGGDSRNVRITLTGSNTVV 169 (237)
Q Consensus 145 ~p~F~q~~~~tt~v~~~l~~~~~~l 169 (237)
+.-..++. .+-.+.-+|.+....+
T Consensus 89 ~~~~~~~s-~tvtV~S~L~g~~g~v 112 (128)
T 3me0_B 89 MRWYKAGT-QNLTIGSRLYGESSKI 112 (128)
T ss_dssp EEESSSEE-EEEEEEEEEEECSSSC
T ss_pred EEEEecCC-cEEEEEEEEecCcCcc
Confidence 73333333 3445666675554333
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=39.76 E-value=16 Score=25.35 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhheeeE
Q 041440 62 CWIILVLFVIGISIGITLVILHK 84 (237)
Q Consensus 62 ~~~~~~ll~liil~gi~~~il~l 84 (237)
.++++.+++.++++|++++++|-
T Consensus 11 ~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 44455667778888888887774
No 6
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=29.79 E-value=35 Score=20.75 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhheee
Q 041440 62 CWIILVLFVIGISIGITLVILH 83 (237)
Q Consensus 62 ~~~~~~ll~liil~gi~~~il~ 83 (237)
.+....++..++++|++.+.+|
T Consensus 10 ~~Iv~gvi~~ivliGl~lLliw 31 (43)
T 2k9j_B 10 LVVLLSVMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHH
Confidence 4444456666778888887776
No 7
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=27.14 E-value=45 Score=23.46 Aligned_cols=17 Identities=35% Similarity=0.233 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 041440 63 WIILVLFVIGISIGITL 79 (237)
Q Consensus 63 ~~~~~ll~liil~gi~~ 79 (237)
+++++++++++++.+++
T Consensus 71 ~iii~~iv~~il~ii~~ 87 (91)
T 3hd7_A 71 MIILGVICAIILIIIIV 87 (91)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34333444444433433
No 8
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=30.87 E-value=15 Score=22.06 Aligned_cols=6 Identities=17% Similarity=-0.009 Sum_probs=3.3
Q ss_pred cCCcEE
Q 041440 88 PKGAIL 93 (237)
Q Consensus 88 P~~P~f 93 (237)
=+.|+|
T Consensus 33 ~qKPrY 38 (39)
T 2l6w_A 33 QKKPRY 38 (39)
Confidence 355665
No 9
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=20.44 E-value=23 Score=30.62 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=15.0
Q ss_pred HHHHHhheee---EEeecCCcEEEEEEE
Q 041440 74 SIGITLVILH---KVYSPKGAILFIADV 98 (237)
Q Consensus 74 l~gi~~~il~---lv~rP~~P~fsV~s~ 98 (237)
|+|++++-+| ..+.|+.|++. +..
T Consensus 29 La~lFa~~m~v~l~TLd~~~Pkyq-d~~ 55 (286)
T 3kdp_B 29 LAGIFIGTIQVMLLTISEFKPTYQ-DRV 55 (286)
T ss_dssp HHHHHHHHHHGGGSCSCSSSCSCC-TTT
T ss_pred HHHHHHHHHHHHHHhCcccCCccc-CCC
Confidence 4444444444 45789999999 543
No 10
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=19.14 E-value=24 Score=28.51 Aligned_cols=15 Identities=7% Similarity=0.211 Sum_probs=0.0
Q ss_pred cCCCCCCCCceeehH
Q 041440 47 RNPMNKRRNSCCTRV 61 (237)
Q Consensus 47 ~~~~~~~~~~CC~c~ 61 (237)
++..+.+..+||||+
T Consensus 195 ~~~~~~~~~~~C~Cl 209 (216)
T 4dkx_A 195 KPQEQPVSEGGCSCL 209 (216)
T ss_dssp ---------------
T ss_pred CCCCCCCCCCCCcee
Done!