Query 041441
Match_columns 310
No_of_seqs 155 out of 1427
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 11:48:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zt5_A Glycyl-tRNA synthetase; 100.0 1.4E-85 4.7E-90 682.0 17.5 307 1-308 114-420 (693)
2 1ati_A Glycyl-tRNA synthetase; 100.0 4.7E-64 1.6E-68 504.4 11.4 244 4-308 56-321 (505)
3 3ikl_A DNA polymerase subunit 100.0 6E-48 2E-52 383.5 9.3 135 128-308 147-284 (459)
4 1g5h_A Mitochondrial DNA polym 100.0 4E-47 1.4E-51 377.4 7.4 195 2-308 77-274 (454)
5 1qf6_A THRRS, threonyl-tRNA sy 100.0 1E-35 3.5E-40 306.2 10.4 195 5-295 287-482 (642)
6 3uh0_A Threonyl-tRNA synthetas 100.0 7E-34 2.4E-38 282.7 12.9 198 4-294 80-287 (460)
7 1evl_A Threonyl-tRNA synthetas 100.0 1.7E-33 5.7E-38 273.4 10.9 203 5-304 46-249 (401)
8 2cja_A Seryl-tRNA synthetase; 100.0 9.7E-34 3.3E-38 285.6 -1.1 196 3-300 246-461 (522)
9 1nyr_A Threonyl-tRNA synthetas 100.0 2.1E-31 7.2E-36 273.7 10.4 196 5-294 287-487 (645)
10 2dq0_A Seryl-tRNA synthetase; 99.9 8.2E-28 2.8E-32 239.0 10.5 170 5-305 209-384 (455)
11 3err_A Fusion protein of micro 99.9 2.2E-27 7.7E-32 240.0 11.3 171 5-306 291-469 (536)
12 2dq3_A Seryl-tRNA synthetase; 99.9 2.9E-27 1E-31 233.1 11.0 167 5-302 188-360 (425)
13 1ses_A Seryl-tRNA synthetase; 99.9 2.1E-27 7.1E-32 234.0 8.4 168 5-303 182-357 (421)
14 3vbb_A Seryl-tRNA synthetase, 99.9 1.2E-26 4E-31 233.6 11.4 184 5-306 217-406 (522)
15 3lss_A Seryl-tRNA synthetase; 99.9 1.3E-26 4.4E-31 231.7 10.6 175 5-306 224-404 (484)
16 3a32_A Probable threonyl-tRNA 99.9 2.6E-25 8.9E-30 220.8 12.2 196 5-294 65-279 (471)
17 1wle_A Seryl-tRNA synthetase; 99.9 3.1E-24 1.1E-28 215.5 12.9 173 5-305 235-415 (501)
18 1hc7_A Prolyl-tRNA synthetase; 99.9 8E-25 2.7E-29 218.3 8.1 160 5-289 60-222 (477)
19 1nj1_A PROR, proline-tRNA synt 99.9 2E-24 6.9E-29 216.6 8.8 173 4-301 86-262 (501)
20 3ial_A Prolyl-tRNA synthetase; 99.9 1.2E-24 4E-29 219.4 4.2 165 5-293 71-239 (518)
21 4hvc_A Bifunctional glutamate/ 99.9 6.6E-24 2.3E-28 214.0 9.1 166 5-294 77-246 (519)
22 3qne_A Seryl-tRNA synthetase, 99.9 7E-24 2.4E-28 212.0 8.7 173 5-306 201-381 (485)
23 2j3l_A Prolyl-tRNA synthetase; 99.9 2.3E-23 8E-28 210.5 9.9 104 5-191 63-166 (572)
24 1nj8_A Proline-tRNA synthetase 99.9 9.8E-23 3.3E-27 202.2 10.7 167 5-295 54-223 (459)
25 2i4l_A Proline-tRNA ligase; al 99.9 4.8E-22 1.6E-26 196.8 9.6 105 4-191 82-186 (458)
26 3mf2_A BLL0957 protein; aminoa 99.8 5.2E-20 1.8E-24 177.0 7.7 186 5-302 79-281 (346)
27 1qe0_A Histidyl-tRNA synthetas 99.7 1.1E-17 3.9E-22 162.1 8.9 121 5-213 32-154 (420)
28 4e51_A Histidine--tRNA ligase; 99.6 9.2E-16 3.1E-20 152.4 10.4 196 5-303 62-317 (467)
29 1h4v_B Histidyl-tRNA synthetas 99.4 7.7E-13 2.6E-17 128.4 11.7 131 5-228 33-165 (421)
30 1z7m_A ATP phosphoribosyltrans 99.4 4E-13 1.4E-17 128.7 5.7 129 5-229 52-182 (344)
31 1htt_A Histidyl-tRNA synthetas 99.3 1.9E-12 6.6E-17 125.6 6.1 119 5-213 34-154 (423)
32 3rac_A Histidine-tRNA ligase; 99.3 3.7E-12 1.3E-16 123.3 7.5 95 127-229 92-189 (373)
33 3dsq_A Pyrrolysyl-tRNA synthet 99.3 2.2E-11 7.7E-16 114.2 11.4 110 128-296 125-234 (288)
34 1wu7_A Histidyl-tRNA synthetas 99.2 9E-12 3.1E-16 121.7 7.3 90 127-229 75-165 (434)
35 1usy_A ATP phosphoribosyltrans 99.1 1.1E-11 3.7E-16 115.2 2.1 107 127-252 47-155 (275)
36 3od1_A ATP phosphoribosyltrans 99.1 7.8E-11 2.7E-15 115.1 5.8 91 127-229 78-168 (400)
37 3lc0_A Histidyl-tRNA synthetas 99.0 2.1E-10 7.3E-15 113.7 7.4 91 127-228 98-189 (456)
38 4g84_A Histidine--tRNA ligase, 99.0 4.7E-10 1.6E-14 109.8 7.0 79 127-213 82-160 (464)
39 3net_A Histidyl-tRNA synthetas 98.9 5.5E-09 1.9E-13 103.5 10.3 91 126-228 94-186 (465)
40 4g85_A Histidine-tRNA ligase, 98.8 4.6E-09 1.6E-13 105.0 7.4 78 127-213 135-213 (517)
41 3qtc_A Pyrrolysyl-tRNA synthet 98.8 2.7E-08 9.1E-13 92.8 11.0 104 127-292 130-233 (290)
42 1nnh_A Asparaginyl-tRNA synthe 98.3 7.4E-06 2.5E-10 76.8 12.4 119 154-303 88-228 (294)
43 3l4g_A Phenylalanyl-tRNA synth 96.8 0.0052 1.8E-07 61.8 10.1 113 127-295 321-435 (508)
44 2du3_A O-phosphoseryl-tRNA syn 96.7 0.0057 2E-07 61.9 9.9 58 127-189 180-238 (534)
45 2du7_A O-phosphoseryl-tRNA syn 96.7 0.011 3.7E-07 60.1 11.4 114 127-295 192-310 (549)
46 1b7y_A Phers, protein (phenyla 96.6 0.015 5.3E-07 55.7 11.5 109 126-295 171-283 (350)
47 2rhq_A Phenylalanyl-tRNA synth 96.5 0.016 5.4E-07 54.0 10.5 55 126-187 108-162 (294)
48 2odr_B Phosphoseryl-tRNA synth 96.0 0.027 9.4E-07 58.0 10.3 113 127-295 199-317 (648)
49 2odr_A Phosphoseryl-tRNA synth 96.0 0.029 9.8E-07 58.0 10.3 113 127-295 199-317 (665)
50 2odr_D Phosphoseryl-tRNA synth 96.0 0.028 9.5E-07 58.2 10.2 113 127-295 199-317 (685)
51 2odr_C Phosphoseryl-tRNA synth 95.5 0.073 2.5E-06 55.2 11.2 113 127-295 199-317 (701)
52 1eov_A ASPRS, aspartyl-tRNA sy 95.4 0.0082 2.8E-07 59.9 3.5 53 125-190 223-279 (487)
53 3a74_A Lysyl-tRNA synthetase; 95.1 0.014 4.6E-07 58.5 4.2 55 125-190 221-275 (493)
54 1x54_A Asparaginyl-tRNA synthe 94.9 0.0092 3.2E-07 58.7 2.1 52 125-190 180-234 (434)
55 1wyd_A Hypothetical aspartyl-t 94.6 0.012 4.1E-07 57.8 2.0 52 125-190 179-233 (429)
56 1e1o_A Lysyl-tRNA synthetase, 94.5 0.025 8.7E-07 56.7 4.3 55 125-190 230-284 (504)
57 1n9w_A Aspartyl-tRNA synthetas 94.2 0.01 3.5E-07 58.2 0.7 54 125-192 170-226 (422)
58 3pco_A Phenylalanyl-tRNA synth 94.2 0.17 5.7E-06 48.2 9.0 49 127-185 163-211 (327)
59 3a5y_A GENX, putative lysyl-tR 93.1 0.028 9.6E-07 53.7 1.6 31 156-189 111-141 (345)
60 2k5c_A Uncharacterized protein 90.1 0.15 5E-06 39.6 2.3 54 33-104 6-59 (95)
61 1l0w_A Aspartyl-tRNA synthetas 89.0 0.14 4.6E-06 52.3 1.8 31 156-189 214-244 (580)
62 1c0a_A Aspartyl tRNA synthetas 88.7 0.14 4.8E-06 52.2 1.7 31 156-189 208-238 (585)
63 3bju_A Lysyl-tRNA synthetase; 88.7 0.15 5.1E-06 51.3 1.9 54 125-189 223-276 (521)
64 4ah6_A Aspartate--tRNA ligase, 87.9 0.18 6.3E-06 51.8 2.0 32 156-190 218-250 (617)
65 4ex5_A Lysine--tRNA ligase; st 85.9 0.27 9.2E-06 49.7 1.9 52 126-188 252-303 (529)
66 3cmq_A Phenylalanyl-tRNA synth 84.0 1.7 5.8E-05 42.4 6.5 131 128-295 114-255 (415)
67 2xgt_A Asparaginyl-tRNA synthe 81.7 0.46 1.6E-05 46.5 1.5 30 156-189 199-230 (435)
68 3nem_A Aspartyl-tRNA synthetas 80.0 0.66 2.3E-05 45.6 1.9 52 126-189 183-236 (438)
69 3l4g_B Phenylalanyl-tRNA synth 78.8 5.6 0.00019 40.3 8.4 45 122-169 442-486 (589)
70 3m4p_A Ehasnrs, asparaginyl-tR 75.4 0.97 3.3E-05 44.6 1.6 51 126-189 202-254 (456)
71 3i7f_A Aspartyl-tRNA synthetas 71.9 1.5 5E-05 44.5 2.0 31 155-189 311-344 (548)
72 4ayb_P DNA-directed RNA polyme 62.4 1.8 6.3E-05 30.0 0.3 16 35-50 3-18 (48)
73 2gmg_A Hypothetical protein PF 60.5 4.1 0.00014 32.7 2.1 18 95-112 83-100 (105)
74 3ica_A Phenylalanyl-tRNA synth 59.5 6.7 0.00023 34.2 3.5 45 121-168 52-97 (213)
75 2lcq_A Putative toxin VAPC6; P 55.9 5.3 0.00018 33.4 2.2 17 30-46 127-143 (165)
76 3a43_A HYPD, hydrogenase nicke 55.0 1.5 5E-05 36.5 -1.5 18 32-49 67-84 (139)
77 2riq_A Poly [ADP-ribose] polym 54.9 12 0.0004 32.1 4.1 26 71-96 29-55 (160)
78 2kdx_A HYPA, hydrogenase/ureas 54.4 7.3 0.00025 31.1 2.7 16 32-47 70-85 (119)
79 2epq_A POZ-, at HOOK-, and zin 54.2 13 0.00044 22.9 3.4 25 25-52 3-27 (45)
80 3ig2_A Phenylalanyl-tRNA synth 49.8 9.6 0.00033 33.2 2.9 46 121-168 52-97 (213)
81 2rhq_B Phenylalanyl-tRNA synth 47.6 14 0.00048 38.8 4.2 44 122-167 541-584 (795)
82 1twf_L ABC10-alpha, DNA-direct 42.6 25 0.00086 25.9 3.8 24 22-45 14-38 (70)
83 2apo_B Ribosome biogenesis pro 42.2 11 0.00036 27.3 1.6 9 34-42 5-13 (60)
84 1l8d_A DNA double-strand break 41.4 12 0.0004 29.2 1.9 21 87-107 35-58 (112)
85 1b7y_B Phers, protein (phenyla 40.3 21 0.00073 37.5 4.2 42 122-165 536-578 (785)
86 1lko_A Rubrerythrin all-iron(I 39.4 10 0.00035 32.8 1.4 14 35-48 155-168 (191)
87 3f2b_A DNA-directed DNA polyme 38.1 6 0.00021 43.0 -0.4 26 99-125 530-555 (1041)
88 3h0g_L DNA-directed RNA polyme 37.6 21 0.0007 26.0 2.5 11 95-105 37-47 (63)
89 2eps_A POZ-, at HOOK-, and zin 37.4 42 0.0015 21.5 4.0 23 32-54 9-31 (54)
90 2k2d_A Ring finger and CHY zin 36.3 23 0.00079 26.6 2.7 17 31-47 31-49 (79)
91 1vq8_Z 50S ribosomal protein L 31.7 20 0.00069 27.3 1.8 39 93-139 24-69 (83)
92 1x6e_A Zinc finger protein 24; 31.2 22 0.00074 24.3 1.8 22 33-54 12-33 (72)
93 2aus_D NOP10, ribosome biogene 30.5 16 0.00054 26.4 0.9 10 34-43 4-13 (60)
94 4gzn_C ZFP-57, zinc finger pro 29.8 23 0.0008 24.5 1.7 19 36-54 5-23 (60)
95 2csh_A Zinc finger protein 297 29.1 38 0.0013 24.8 3.0 26 25-54 3-28 (110)
96 3pwf_A Rubrerythrin; non heme 28.9 21 0.00073 30.4 1.6 14 33-46 136-149 (170)
97 1yc5_A NAD-dependent deacetyla 28.2 14 0.00047 33.1 0.3 14 36-49 122-135 (246)
98 2ctd_A Zinc finger protein 512 27.8 49 0.0017 24.5 3.4 14 33-46 32-45 (96)
99 2epr_A POZ-, at HOOK-, and zin 26.2 66 0.0022 19.9 3.4 22 33-54 10-31 (48)
100 1q1a_A HST2 protein; ternary c 23.9 24 0.00084 32.2 1.2 15 36-50 137-151 (289)
101 2zjr_Z 50S ribosomal protein L 23.9 58 0.002 23.2 2.9 18 27-44 22-39 (60)
102 1ma3_A SIR2-AF2, transcription 23.8 33 0.0011 30.7 2.0 15 36-50 124-138 (253)
103 3uk3_C Zinc finger protein 217 23.3 27 0.00093 22.3 1.0 20 35-54 4-23 (57)
104 3glr_A NAD-dependent deacetyla 23.2 38 0.0013 31.2 2.3 14 36-49 140-153 (285)
105 2gqj_A Zinc finger protein KIA 22.5 41 0.0014 24.6 2.0 22 33-54 22-44 (98)
106 1pft_A TFIIB, PFTFIIBN; N-term 22.2 27 0.00092 23.4 0.8 9 96-104 5-13 (50)
107 1q14_A HST2 protein; histone d 22.1 37 0.0013 32.4 2.0 15 36-50 145-159 (361)
108 2adr_A ADR1; transcription reg 21.9 29 0.001 22.4 1.0 19 36-54 3-21 (60)
109 2ee8_A Protein ODD-skipped-rel 21.5 1.2E+02 0.004 21.7 4.5 22 33-54 15-36 (106)
110 3vrc_A Cytochrome C'; C-type c 21.4 8.4 0.00029 31.5 -2.3 15 34-48 117-131 (131)
111 1bbo_A Human enhancer-binding 21.2 20 0.0007 22.9 0.0 19 36-54 2-20 (57)
112 2hlj_A Hypothetical protein; p 21.1 1.3E+02 0.0043 23.3 4.8 39 222-260 10-49 (157)
113 2y69_E Cytochrome C oxidase su 20.7 58 0.002 27.5 2.7 31 228-258 112-143 (152)
114 2d9h_A Zinc finger protein 692 20.4 41 0.0014 23.1 1.5 22 33-54 5-26 (78)
115 1z54_A Probable thioesterase; 20.3 79 0.0027 23.6 3.3 37 222-258 7-44 (132)
116 1syx_B CD2BP2, CD2 antigen cyt 20.1 27 0.00092 26.9 0.5 34 251-284 52-85 (86)
No 1
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=100.00 E-value=1.4e-85 Score=682.00 Aligned_cols=307 Identities=55% Similarity=0.950 Sum_probs=292.3
Q ss_pred CeeecCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhc
Q 041441 1 HFLLKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMM 80 (310)
Q Consensus 1 ~fv~~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (310)
||+.++||.||+||+|+|.+||++||||++|+|+|++|++|+++||||||+++++++.+.+ .+.++++.++|..+++.+
T Consensus 114 ~~~~~~g~~EV~tP~l~~~~lwk~SGH~~~f~d~m~~~~~~~e~yr~D~l~e~~~~~~~~~-~~~~~~~~~e~~~~~~~l 192 (693)
T 2zt5_A 114 HFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSD-KKCSVEKKSEMESVLAQL 192 (693)
T ss_dssp HTHHHHTCEECCCCSEEEHHHHHHHTHHHHCEEEEEEBSSSCCEEEHHHHHHHHHHHHHHS-TTCCHHHHHHHHHHHTTT
T ss_pred HHHHhcCcEEEEeCCcccHHHHhhcCCcccccccceeeccCCceeeccHhHHHHHHHhhcc-ccccHHHHHHHHHHHhhc
Confidence 3555679999999999999999999999999999999999999999999999987655543 345667788999999999
Q ss_pred cCCCHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeec
Q 041441 81 DDLSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQI 160 (310)
Q Consensus 81 ~~~~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqi 160 (310)
++++.+||.++|++++|+||.||++||+|++|||||+|+|||+++.++|||||||||||+||+|++++++++|||++|||
T Consensus 193 ~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~t~igp~~~~~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqi 272 (693)
T 2zt5_A 193 DNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQI 272 (693)
T ss_dssp TTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCEEECSSSSSSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEE
T ss_pred cCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeeeccccCCCCcceeeccccchHHHHHHHHHHHHhCcCCCEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999766999999999
Q ss_pred ccccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChHHH
Q 041441 161 GQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETI 240 (310)
Q Consensus 161 Gk~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~ 240 (310)
|++||||||||+||+|+|||+|+|+|+||+|++..|+.|..|.|..+++|++..|.+|....++++.+|+++|+|+++|+
T Consensus 273 G~~fRnEisPr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~~~~~~~~~~~~~~~~~~~~~ea~~~g~i~~e~~ 352 (693)
T 2zt5_A 273 GNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVL 352 (693)
T ss_dssp EEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEECHHHHHTTCCCEEEEHHHHHHHTSSCCHHH
T ss_pred cceecCCCCCCCCCccceeeEEccceEEeCcchhcchhHHHHHHHHHhhhhhhhhccccccccchhhhhhhhcccchHHH
Confidence 99999999999999999999999999999999998999999999999999999998887799999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCCCeEEEeehccCcchhhhhhhc
Q 041441 241 GYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHTV 308 (310)
Q Consensus 241 ~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~Gw~E~~gia~R~~yDL~~H~~ 308 (310)
+||++.+..||.++|++++++||+++.++|+|||+.+|||+++.+++||.||+|+|+|++|||++|.+
T Consensus 353 ~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~a~ya~~~~d~e~~~~~g~~e~~~~a~r~~~dL~~~~~ 420 (693)
T 2zt5_A 353 GYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHAR 420 (693)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCTTCSSEEEEEEEETTEEEEEEEEECCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcCccEEEEeccCchhhccchhhhhhehhhccCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999975
No 2
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=100.00 E-value=4.7e-64 Score=504.39 Aligned_cols=244 Identities=36% Similarity=0.505 Sum_probs=187.0
Q ss_pred ecCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccC-
Q 041441 4 LKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDD- 82 (310)
Q Consensus 4 ~~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 82 (310)
.+.|+.||+||+|+|.+||++||||++|+|.|++|++|+++||||||++++. .++. .+++
T Consensus 56 ~~~g~~ev~tP~l~~~~l~~~SGh~~~f~d~m~~~~~~~~~~r~d~l~~~~~-~~~~------------------~~~~~ 116 (505)
T 1ati_A 56 ERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNRITKKRYRLDHLLKEQP-EEVL------------------KRLYR 116 (505)
T ss_dssp SCSSEEEEBCCSEEETTHHHHTSHHHHCEEEEEEC---------------------------------------------
T ss_pred hhCCcEEEEccccCCHHHHHhcCChhhcCccceeccccccccchhhhhhhhh-hhhc------------------ccccc
Confidence 3789999999999999999999999999999999999999999999987651 1000 0122
Q ss_pred --CCHHHHHHHHHHhCCC---------------CCCCC--CCCCCCcccceeeeeeeccCCC--CceecCCCchhhHHHH
Q 041441 83 --LSVEELGAKIKEYGIT---------------APDTK--NPLSDPYPFNLMFQTSVGPSGL--TAAYVRPETAPGIFVN 141 (310)
Q Consensus 83 --~~~~~~~~~i~~~~i~---------------cP~~g--~~l~~~~~FNLMF~t~iGp~~~--~~~yLRPETAQgif~n 141 (310)
++.+||..+|++|+|+ ||.|| ++||+|++|||||+|.|||+.+ ...|||||||||+|++
T Consensus 117 ~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~fnlmf~t~~gpt~ee~~~~~LRPE~t~~i~~~ 196 (505)
T 1ati_A 117 AMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVN 196 (505)
T ss_dssp ------------------------------------------CCCCEEEECBEEEECSSCCCGGGEEEECSSSHHHHHHT
T ss_pred ccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccchhhhhhhcccCCccccccceeecccchhHHHHH
Confidence 6888999999999998 99998 6999999999999999999975 5799999999999999
Q ss_pred HhhhhhhccCCCCceeeecccccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccc
Q 041441 142 FKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSA 221 (310)
Q Consensus 142 Fk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~ 221 (310)
|++.++||+++||++++|+|++||||++|++||+|+|||+|+|+|+||+|++.
T Consensus 197 ~~~~~~sy~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~e~~--------------------------- 249 (505)
T 1ati_A 197 FKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGED--------------------------- 249 (505)
T ss_dssp HHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGH---------------------------
T ss_pred HHHHHHhcCCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECHHHH---------------------------
Confidence 99999999559999999999999999999999999999999999999999874
Q ss_pred eEEEecccccccccChHHHHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCCCeEEEeehccCcch
Q 041441 222 KKIRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAY 301 (310)
Q Consensus 222 ~~~s~~~a~~~~~i~~e~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~Gw~E~~gia~R~~y 301 (310)
.++.++|++....||.++|+++..++++.+.+++++||+.+|||+|+.+++||.|++|+++|++|
T Consensus 250 ---------------~~~~~~~i~~~~~i~~~LGl~~~~v~~~~~~~~~~~~~~~~~~d~E~~~p~~~~e~~g~~~~~d~ 314 (505)
T 1ati_A 250 ---------------EYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDF 314 (505)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEETTEEEEEEEEEECTTH
T ss_pred ---------------HHHHHHHHHHHHHHHHHcCCCeEEEEECCCChHhhhcccHHHHhHHhhcCCCCccchhhhcccce
Confidence 36778899999999999999998999999989999999999999999999999999999999999
Q ss_pred hhhhhhc
Q 041441 302 DLRAHTV 308 (310)
Q Consensus 302 DL~~H~~ 308 (310)
||..|.+
T Consensus 315 ~L~~~~~ 321 (505)
T 1ati_A 315 DLGSHTK 321 (505)
T ss_dssp HHHHHCS
T ss_pred ecchhhc
Confidence 9998875
No 3
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=100.00 E-value=6e-48 Score=383.47 Aligned_cols=135 Identities=15% Similarity=0.204 Sum_probs=121.8
Q ss_pred eecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccc---cCCCCccccccccccccceeeeCCCCCCccchhhhhh
Q 041441 128 AYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNE---ISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKN 204 (310)
Q Consensus 128 ~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNE---iSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d 204 (310)
.|||||||||||+||++.++|||+||||++||+|+||||| +++++||+|||||||+|+|+||+|+|+
T Consensus 147 ~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~---------- 216 (459)
T 3ikl_A 147 GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTS---------- 216 (459)
T ss_dssp TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGH----------
T ss_pred ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHH----------
Confidence 5899999999999999999999999999999999999999 578999999999999999999999885
Q ss_pred hhhhcchhhhhhccccceEEEecccccccccChHHHHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEE
Q 041441 205 LEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIE 284 (310)
Q Consensus 205 ~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~ 284 (310)
++|++||+..+..||.++||+++++|++++.+++ |.+|+|+|+.
T Consensus 217 --------------------------------~e~~~~~~~~~~~~~~~LGi~~~~~r~~~~~~ee----A~~~~DiE~~ 260 (459)
T 3ikl_A 217 --------------------------------NQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEE----GRKGNKLYYN 260 (459)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHCSSGGGEEEEEECCSS----SSCEEEEEEE
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHhCCChhhEEEeecCchH----HHhhcCeEEE
Confidence 5889999999999999999999999999997776 7899999999
Q ss_pred cCCCeEEEeehccCcchhhhhhhc
Q 041441 285 CSYGWIECVGIADRSAYDLRAHTV 308 (310)
Q Consensus 285 ~~~Gw~E~~gia~R~~yDL~~H~~ 308 (310)
+|+||.|++|||||+||||++|.+
T Consensus 261 ~p~G~~E~~g~sn~tDfqL~~~~~ 284 (459)
T 3ikl_A 261 FPWGKELIETLWNLGDHELLHMYP 284 (459)
T ss_dssp CSSCEEEEEEEEEEETHHHHHHSC
T ss_pred cCCceEEEeeeeccchhhhhcccc
Confidence 999999999999999999999974
No 4
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=100.00 E-value=4e-47 Score=377.43 Aligned_cols=195 Identities=15% Similarity=0.190 Sum_probs=163.0
Q ss_pred eeecCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhcc
Q 041441 2 FLLKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMD 81 (310)
Q Consensus 2 fv~~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (310)
|+.++|++||+||+|+|..+|++| +||.+|||||+.++. ..+
T Consensus 77 ~~~~~g~~ev~tp~l~~~~~~~~s--------------~~g~~~r~d~~~e~~------------------------~~~ 118 (454)
T 1g5h_A 77 VVFREQVFAVDSLHQEPGSSQPRD--------------SAFRLVSPESIREIL------------------------QDR 118 (454)
T ss_dssp TTTCTTEEECCCCSEECCCCSSCC--------------CCCEEECHHHHHHHH------------------------CC-
T ss_pred hhhcCCeEEEEcCccCChhhcccc--------------ccCcccHHHHHHHHh------------------------hcc
Confidence 346899999999999999999997 788899999997631 145
Q ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeecc
Q 041441 82 DLSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIG 161 (310)
Q Consensus 82 ~~~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiG 161 (310)
+++.++|...|.++ ++ ...|||||||||||+||++.++|||++|||++||+|
T Consensus 119 g~~~eem~~~~~~~--------------------~~--------~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig 170 (454)
T 1g5h_A 119 EPSKEQLVAFLENL--------------------LK--------TSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIG 170 (454)
T ss_dssp --CHHHHHHHHHHH--------------------HH--------HSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEE
T ss_pred CCCHHHHHHHHHhh--------------------cC--------cceeecccccHHHHHHHhhhHhhcccCCCEEEEEee
Confidence 77888887776542 11 268999999999999999999999999999999999
Q ss_pred cccc---cccCCCCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChH
Q 041441 162 QAFR---NEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNE 238 (310)
Q Consensus 162 k~fR---NEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e 238 (310)
+||| ||+||++||+|||||||+|+|+||+|+|. ++
T Consensus 171 ~~fR~~~nE~s~~~Gl~R~REF~q~E~~~F~~pe~~------------------------------------------~e 208 (454)
T 1g5h_A 171 VCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTS------------------------------------------SQ 208 (454)
T ss_dssp EEEEEEC---------CEEEEEEEEEEEEEECHHHH------------------------------------------HH
T ss_pred eeccCCcccccCCCCccccCceehhheEEEeCHhhH------------------------------------------HH
Confidence 9999 79999999999999999999999999774 58
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCCCeEEEeehccCcchhhhhhhc
Q 041441 239 TIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHTV 308 (310)
Q Consensus 239 ~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~Gw~E~~gia~R~~yDL~~H~~ 308 (310)
|++||++....||.++|++++++|+.++.+.+ +.+|+|+++.+|+||.|+.||++|+||||.+|++
T Consensus 209 ~~~~~~~~~~~~~~~lgi~~~~~r~~~~~~~~----a~~~~~ie~~~p~g~~e~~g~~~~td~~l~~~~~ 274 (454)
T 1g5h_A 209 WLDFWLRHRLLWWRKFAMSPSNFSSADCQDEL----GRKGSKLYYSFPWGKEPIETLWNLGDQELLHTYP 274 (454)
T ss_dssp HHHHHHHHHHHHHHTTCSSGGGEEEEEEECTT----SCEEEEEEEEETTEEEEEEEEEEEESHHHHHHST
T ss_pred HHHHHHHHHHHHHHHcCCCceeEEecCCHHHH----HhcCCCcEEecCCCceEEEEecCCCHHHHHhccC
Confidence 89999999999999999999999999886555 5789999999999999999999999999999954
No 5
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=1e-35 Score=306.20 Aligned_cols=195 Identities=20% Similarity=0.258 Sum_probs=173.4
Q ss_pred cCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCCC
Q 041441 5 KENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLS 84 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (310)
+.|+.||+||+|++.++|++|||+++|.|.|+. .+.+
T Consensus 287 ~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~-~d~~------------------------------------------ 323 (642)
T 1qf6_A 287 EYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSE------------------------------------------ 323 (642)
T ss_dssp HTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE-EEET------------------------------------------
T ss_pred HcCCEEEECCcCccHHHHhhcCcccccccccee-eecC------------------------------------------
Confidence 679999999999999999999999999999996 3321
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeeccccc
Q 041441 85 VEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAF 164 (310)
Q Consensus 85 ~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~f 164 (310)
+ ..-||||++++|++..|++.++||| +||++++|+|+||
T Consensus 324 -------------------~---------------------~~~~LrP~~~~~~~~~~~~~~~syr-~LPlr~~~~g~~f 362 (642)
T 1qf6_A 324 -------------------N---------------------REYCIKPMNCPGHVQIFNQGLKSYR-DLPLRMAEFGSCH 362 (642)
T ss_dssp -------------------T---------------------EEEEECSSSHHHHHHHHTTSCEEGG-GCSEEEEEEEEEE
T ss_pred -------------------C---------------------ceEEecCCCCHHHHHHHHhhhhhcc-ccCeEEEEeccEE
Confidence 1 1468999999999999999999999 8999999999999
Q ss_pred ccccC-CCCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChHHHHHH
Q 041441 165 RNEIS-PRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGYF 243 (310)
Q Consensus 165 RNEiS-pr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~~y~ 243 (310)
|||+| |++||+|+|||+|+|+|+||+|+|. .+++..+.++...+|..+ |.+.+.+.+++.+++.+++++.|+.+
T Consensus 363 R~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~-~~e~~~~i~~~~~i~~~l----Gl~~~~v~l~~~~e~~~g~~e~w~~a 437 (642)
T 1qf6_A 363 RNEPSGSLHGLMRVRGFTQDDAHIFCTEEQI-RDEVNGCIRLVYDMYSTF----GFEKIVVKLSTRPEKRIGSDEMWDRA 437 (642)
T ss_dssp CCCCGGGCBTTTBCSEEEEEEEEEEECGGGH-HHHHHHHHHHHHHHHGGG----TCCCCEEEEECCCSSCCSCHHHHHHH
T ss_pred ecCCCccccCCceeeeEEEccEEEEcCHHHH-HHHHHHHHHHHHHHHHHc----CCCceEEEEecCcccccCCHHHHHHH
Confidence 99999 6999999999999999999999987 688999999999999875 34345556666667777788999999
Q ss_pred HHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCCCeEEEeeh
Q 041441 244 IGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGI 295 (310)
Q Consensus 244 ~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~Gw~E~~gi 295 (310)
.+.+.++|..+|+++ ++.++|+|||||+ ||+++.+++||...+|.
T Consensus 438 ~~~l~~~l~~~g~~~------~~~~g~~afygpk-~d~~~~d~~G~~~~~gt 482 (642)
T 1qf6_A 438 EADLAVALEENNIPF------EYQLGEGAFYGPK-IEFTLYDCLDRAWQCGT 482 (642)
T ss_dssp HHHHHHHHHTTTCCC------EEETTCSCTTCCE-EEEEEECTTCCEEEEEE
T ss_pred HHHHHHHHHHcCCCc------EEcCCCcccccCc-ccEEEEccCCceEEeee
Confidence 999999999999997 7899999999999 99999999999998884
No 6
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=7e-34 Score=282.65 Aligned_cols=198 Identities=19% Similarity=0.186 Sum_probs=172.4
Q ss_pred ecCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCC
Q 041441 4 LKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDL 83 (310)
Q Consensus 4 ~~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (310)
.+.|+.||.||+|.+.++|++|||+++|.+.|+.++.++.
T Consensus 80 ~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~---------------------------------------- 119 (460)
T 3uh0_A 80 FKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDE---------------------------------------- 119 (460)
T ss_dssp HTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC-------------------------------------------
T ss_pred HhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCC----------------------------------------
Confidence 4679999999999999999999999999999997765320
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeecccc
Q 041441 84 SVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQA 163 (310)
Q Consensus 84 ~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~ 163 (310)
++...+|||+++++++..|++.+.||+ +||++++|+|.|
T Consensus 120 ----------------------------------------~~~~l~LrPt~~~~~~~~~~~~~~s~r-~LPlrl~~~g~~ 158 (460)
T 3uh0_A 120 ----------------------------------------EKEEYGLKPMNCPGHCLIFGKKDRSYN-ELPLRFSDFSPL 158 (460)
T ss_dssp -------------------------------------------CEEECSCSHHHHHHHHTTSCCBGG-GCSEEEEECCEE
T ss_pred ----------------------------------------CCceEEEcccCcHHHHHHHHhcccccc-ccCeEEEEecCe
Confidence 012579999999999999999999998 899999999999
Q ss_pred cccccCC-CCccccccccccccceeeeCCCCCCccchhhhhhhhhhcc-hhhhhhcccc--------ceEEEeccccccc
Q 041441 164 FRNEISP-RQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMF-PREEQMSAQS--------AKKIRLGEAVSRG 233 (310)
Q Consensus 164 fRNEiSp-r~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~-~~~~q~~~~~--------~~~~s~~~a~~~~ 233 (310)
||||.++ ++||+|+|||+|+|+|+||+|+|. .+++..+.++...+| ..+ |.. .+++.+++++++-
T Consensus 159 fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~~-~~e~~~~i~~~~~~~~~~l----Gl~~~~~~~~~~~~~~l~t~pe~~ 233 (460)
T 3uh0_A 159 HRNEASGALSGLTRLRKFHQDDGHIFCTPSQV-KSEIFNSLKLIDIVYNKIF----PFVKGGSGAESNYFINFSTRPDHF 233 (460)
T ss_dssp ECCCCTTTCBTTTBCSEEEEEEEEEEECGGGH-HHHHHHHHHHHHHHHTTTS----CCC-----CCSSCEEEEECCCSSC
T ss_pred eeCCCCCCCCCceeeeeEEEeeEEEEcCHHHH-HHHHHHHHHHHHHHHHHHc----CCCCcccccccceEEEEccCCccc
Confidence 9999998 899999999999999999999887 578888999999898 654 333 5677778888777
Q ss_pred ccChHHHHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCCCeEEEee
Q 041441 234 IVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVG 294 (310)
Q Consensus 234 ~i~~e~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~Gw~E~~g 294 (310)
+++++.|+.++..+..+|.+.|+++ ...++++|||||+ +|+.+.++.|....+|
T Consensus 234 ~G~~~~w~~ae~~L~~~l~~~g~~~------~~~~g~gafygpk-id~~~~d~~gr~~q~~ 287 (460)
T 3uh0_A 234 IGDLKVWNHAEQVLKEILEESGKPW------KLNPGDGAFYGPK-LDIMVTDHLRKTHQVA 287 (460)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTCCE------EEETTCSCSSCCE-EEEEEECTTSCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCe------eECCCccccccce-EEEEEEccCCCeeeec
Confidence 7778999999999999999999996 7889999999999 8999999999765554
No 7
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=1.7e-33 Score=273.44 Aligned_cols=203 Identities=20% Similarity=0.260 Sum_probs=172.5
Q ss_pred cCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCCC
Q 041441 5 KENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLS 84 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (310)
+.|+.||+||+|.+.+||++|||++.|.+.|+. .+.+
T Consensus 46 ~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~-~d~~------------------------------------------ 82 (401)
T 1evl_A 46 EYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSE------------------------------------------ 82 (401)
T ss_dssp HTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCE-EEET------------------------------------------
T ss_pred HcCCEEEECCeeccHHHHHhcCcHhhhchhhEe-EecC------------------------------------------
Confidence 679999999999999999999999999999986 3311
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeeccccc
Q 041441 85 VEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAF 164 (310)
Q Consensus 85 ~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~f 164 (310)
+ ...+||||++++++..|++.+.+|+ +||++++|+|+||
T Consensus 83 -------------------~---------------------~~~~LrP~~~~~~~~~~~~~~~s~~-~lP~r~~~~g~~f 121 (401)
T 1evl_A 83 -------------------N---------------------REYCIKPMNCPGHVQIFNQGLKSYR-DLPLRMAEFGSCH 121 (401)
T ss_dssp -------------------T---------------------EEEEECSCSHHHHHHHHTSSCCBGG-GCSEEEEEEEEEE
T ss_pred -------------------C---------------------ceEEEcCCCCHHHHHHHHhhhhhhh-hCChhhcccccee
Confidence 1 2469999999999999999999999 8999999999999
Q ss_pred ccccC-CCCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChHHHHHH
Q 041441 165 RNEIS-PRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGYF 243 (310)
Q Consensus 165 RNEiS-pr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~~y~ 243 (310)
|||++ |++||+|+|||+|.|+|+||+|++. ..++..+.++...+|... + .+.+.+.+++..+...++++.|+.+
T Consensus 122 R~E~~~p~~Gl~R~reF~q~d~~~f~~~~~~-~~e~~e~i~~~~~~~~~l---g-l~~~~~~~~~~~~~~~~~~~~~~~a 196 (401)
T 1evl_A 122 RNEPSGSLHGLMRVRGFTQDDAHIFCTEEQI-RDEVNGCIRLVYDMYSTF---G-FEKIVVKLSTRPEKRIGSDEMWDRA 196 (401)
T ss_dssp CCCCGGGCBTTTBCSEEEEEEEEEEECGGGH-HHHHHHHHHHHHHHHHTT---T-CSCCEEEEECCCSSCCSCHHHHHHH
T ss_pred cCCCCcccccccccCcEEecceEEeCCHHHH-HHHHHHHHHHHHHHHHHc---C-CCceEEEEecCCcccCCCHHHHHHH
Confidence 99999 7999999999999999999998886 577888999988888764 3 3334445554446667777999999
Q ss_pred HHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCCCeEEEeehccCcchhhh
Q 041441 244 IGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLR 304 (310)
Q Consensus 244 ~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~Gw~E~~gia~R~~yDL~ 304 (310)
.+.+..+|..+|+++ ++.++++|||||+ ||+.+.+++||...+|... .||+|+
T Consensus 197 ~~~~~~~l~~~g~~~------~~~~~~~~~y~~~-~d~~~~~~~G~~~~~gt~~-~d~~l~ 249 (401)
T 1evl_A 197 EADLAVALEENNIPF------EYQLGEGAFYGPK-IEFTLYDCLDRAWQCGTVQ-LDFSLP 249 (401)
T ss_dssp HHHHHHHHHHTTCCC------EEETTCSBTTBCE-EEEEEECTTCCEEEEEEEE-EESSHH
T ss_pred HHHHHHHHHhcCCCc------eecCCCccccCCC-cCeEEEecCCCeEEeeeee-eccccc
Confidence 999999999999986 5788999999997 9999999999999988442 355543
No 8
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=99.97 E-value=9.7e-34 Score=285.56 Aligned_cols=196 Identities=16% Similarity=0.140 Sum_probs=151.4
Q ss_pred eecCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccC
Q 041441 3 LLKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDD 82 (310)
Q Consensus 3 v~~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (310)
+.+.|+.||++|+|+|.+||++|||+++|.|.|+.|+.|+. |.|+++++.++.
T Consensus 246 ~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~--Rd~~~~e~~~~~------------------------- 298 (522)
T 2cja_A 246 LEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQT--RDPDYWEEVADY------------------------- 298 (522)
T ss_dssp HHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSC--CCHHHHHHHHHH-------------------------
T ss_pred HHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCc--cchhhhhhhhhh-------------------------
Confidence 34679999999999999999999999999999999998774 467776544311
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeee-cc
Q 041441 83 LSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQ-IG 161 (310)
Q Consensus 83 ~~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAq-iG 161 (310)
+...|+.||++|++++. +...||||+|+|+++.+|++...+|+ +||++++| +|
T Consensus 299 ------------~~~~~~~~~~~~~~~~~-------------~~~l~LrPt~e~~i~~~f~~~i~s~~-~LPlrl~q~ig 352 (522)
T 2cja_A 299 ------------YKVTHEVPTKLIKEKIA-------------EPIGGMCYAQCPPFWMYVAGETLPNE-EIPVKVFDRSG 352 (522)
T ss_dssp ------------HHHHSSCCHHHHHHHBC-------------CCCEEECSSSSGGGGGGTTTCEECGG-GCSEEEEECSS
T ss_pred ------------hhccccccccccccccC-------------CCcEEEccCCcHHHHHHHHhcccccc-cCCeeEEEEcC
Confidence 00135556655544332 45789999999999999999999997 89999999 99
Q ss_pred cccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChHHHH
Q 041441 162 QAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIG 241 (310)
Q Consensus 162 k~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~~ 241 (310)
+|||||..+++||+|+|||+|+|+|+||+|++. .++++
T Consensus 353 ~~FR~Epgs~~GL~R~REF~q~E~~~F~~pe~s------------------------------------------~ee~e 390 (522)
T 2cja_A 353 TSHRYESGGIHGIERVDEFHRIEIVWIGTKEEV------------------------------------------LKCAE 390 (522)
T ss_dssp EEECCCSSSCCCTTSCSEEEEEEEEEEEEHHHH------------------------------------------HHHHH
T ss_pred ceEeCCCCCCCCCeEeEEEEEeeEEEEeChHHH------------------------------------------HHHHH
Confidence 999999444799999999999999999999774 35667
Q ss_pred HHH-HHHHHHHHHcCCCCCCCceeeccCCccccc-------------cCceeeEEEEcCC--Ce---EEEeehccCcc
Q 041441 242 YFI-GRVYLFLSRLGIDQDHLRFRQHLANEMAHY-------------AADCWDAEIECSY--GW---IECVGIADRSA 300 (310)
Q Consensus 242 y~~-~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhY-------------g~k~~D~e~~~~~--Gw---~E~~gia~R~~ 300 (310)
+|+ .....|++++||+ .++ + ...+|| |.++.|+|+.+|+ |+ .+|..+.+=+|
T Consensus 391 e~i~~~~~~~l~~LGLp--~v~---~--~~D~f~~a~~G~~G~~q~~a~~k~DiE~~~P~~~g~~~~~eisS~s~~~d 461 (522)
T 2cja_A 391 ELHDRYMHIFNDILDIE--WRK---A--RVTPWFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGD 461 (522)
T ss_dssp HHHHHHHHHHHHTSCCC--EEE---E--EC----------------CCCEEEEEEECCGGGCTTCCCEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCC--EEe---e--ccCCccccccccccchhccccceEEEEEecccccCCCcEEEEeeechhhh
Confidence 788 7888899999999 332 2 235788 8899999999996 55 45555544443
No 9
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.97 E-value=2.1e-31 Score=273.71 Aligned_cols=196 Identities=20% Similarity=0.282 Sum_probs=166.6
Q ss_pred cCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCCC
Q 041441 5 KENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLS 84 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (310)
+.|+.||+||+|.+.++|++|||++.|.|.|+.+.+.+
T Consensus 287 ~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~~------------------------------------------ 324 (645)
T 1nyr_A 287 SMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLD------------------------------------------ 324 (645)
T ss_dssp HTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEET------------------------------------------
T ss_pred HcCCEEEECCeeccHHHHhhCCCccccccCcceeEecC------------------------------------------
Confidence 67999999999999999999999999999999654321
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeeccccc
Q 041441 85 VEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAF 164 (310)
Q Consensus 85 ~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~f 164 (310)
+. ...+|||++++++...|++.++||| +||++++|+|+||
T Consensus 325 -------------------~~--------------------~~~~LrP~~~~~~~~~~~~~~~syr-~LPlrl~~~g~~f 364 (645)
T 1nyr_A 325 -------------------ET--------------------ESMVLRPMNCPHHMMIYANKPHSYR-ELPIRIAELGTMH 364 (645)
T ss_dssp -------------------TT--------------------EEEEECSSSHHHHHHHHHTSCCBGG-GCCEEEEEEEEEE
T ss_pred -------------------CC--------------------eEEEeCCCCCHHHHHHHHhhhhhcc-CCCeEEEEeccEE
Confidence 00 2468999999999999999999999 8999999999999
Q ss_pred ccccC-CCCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccc----cccccChHH
Q 041441 165 RNEIS-PRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAV----SRGIVNNET 239 (310)
Q Consensus 165 RNEiS-pr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~----~~~~i~~e~ 239 (310)
|||+| |++||+|+|||+|+|+|+||+|++. .+++..+.++...+|.++ |.+.+.+.+++.+ ++.+++++.
T Consensus 365 R~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~-~d~~~e~i~~~~~~l~~l----Gl~~~~~~l~~~~~~~~e~~~g~~e~ 439 (645)
T 1nyr_A 365 RYEASGAVSGLQRVRGMTLNDSHIFVRPDQI-KEEFKRVVNMIIDVYKDF----GFEDYSFRLSYRDPEDKEKYFDDDDM 439 (645)
T ss_dssp CCCCTTTCBTTTBCSEEEEEEEEEEECGGGH-HHHHHHHHHHHHHHHHHT----TCCCEEEEEEECCCCCSSSSSCCHHH
T ss_pred ecCCCccccCcceeeeEEEccEEEEcCHHHH-HHHHHHHHHHHHHHHHHc----CCCeEEEEEeCCCcccchhhcCChHH
Confidence 99999 6999999999999999999999997 578899999999999875 4444555555554 555666789
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCCCeEEEee
Q 041441 240 IGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVG 294 (310)
Q Consensus 240 ~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~Gw~E~~g 294 (310)
|+.....+...|.+.|+++ ...++++|||||+ +|+++.++.|-..-+|
T Consensus 440 ~~~~~~~l~~~l~~~g~~~------~~~~~~~~~ygpk-i~~~~~d~lg~~~~~g 487 (645)
T 1nyr_A 440 WNKAENMLKEAADELGLSY------EEAIGEAAFYGPK-LDVQVKTAMGKEETLS 487 (645)
T ss_dssp HHHHHHHHHHHHHHHCCCC------CCEESCSBTTBCE-EEEEECCTTSCCEEEE
T ss_pred HHHHHHHHHHHHHHcCCCe------EecCCCCceeCCc-cceehhhhhCchhhcc
Confidence 9999999999999999997 6678999999999 8999888777654443
No 10
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=99.94 E-value=8.2e-28 Score=239.02 Aligned_cols=170 Identities=19% Similarity=0.237 Sum_probs=150.0
Q ss_pred cCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCCC
Q 041441 5 KENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLS 84 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (310)
+.|+.+|.+|+|++.++|++|||+++|.|.|+.+.
T Consensus 209 ~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--------------------------------------------- 243 (455)
T 2dq0_A 209 EKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVE--------------------------------------------- 243 (455)
T ss_dssp HTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBT---------------------------------------------
T ss_pred HcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeec---------------------------------------------
Confidence 57999999999999999999999999998887321
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeeccccc
Q 041441 85 VEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAF 164 (310)
Q Consensus 85 ~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~f 164 (310)
+...||||+++++++..|++...+++ +||++++|+|.||
T Consensus 244 ----------------------------------------d~~l~LrPt~e~~~~~~~~~~~~s~~-~LPlr~~~~g~~F 282 (455)
T 2dq0_A 244 ----------------------------------------DEDLYLIPTAEHPLAGMHANEILDGK-DLPLLYVGVSPCF 282 (455)
T ss_dssp ----------------------------------------TSSCEECSSTHHHHHHTTTTEEEETT-TCSEEEEEEEEEE
T ss_pred ----------------------------------------CCcEEEcCcCcHHHHHHHHhCccCch-hCCEEEEEecCcc
Confidence 01369999999999999999888888 8999999999999
Q ss_pred ccccCC----CCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChHHH
Q 041441 165 RNEISP----RQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETI 240 (310)
Q Consensus 165 RNEiSp----r~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~ 240 (310)
|+|.++ .+||+|+|||+|.|+++||+|+|. .+++
T Consensus 283 R~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s------------------------------------------~~~~ 320 (455)
T 2dq0_A 283 RKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEES------------------------------------------WEWH 320 (455)
T ss_dssp CCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTH------------------------------------------HHHH
T ss_pred cCCCCccccccCCceeeeeeEeeeEEEecCHHHH------------------------------------------HHHH
Confidence 999985 499999999999999999999774 3556
Q ss_pred HHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCC--CeEEEeehccCcchhhhh
Q 041441 241 GYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSY--GWIECVGIADRSAYDLRA 305 (310)
Q Consensus 241 ~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~--Gw~E~~gia~R~~yDL~~ 305 (310)
+.++.....+|+++||+ +|......+++.+++.++||+|+.+|. +|.|+.++++.+||..++
T Consensus 321 ~e~l~~~~~il~~LGL~---yrv~~~~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~s~c~DfqarR 384 (455)
T 2dq0_A 321 EKIIRNAEELFQELEIP---YRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARR 384 (455)
T ss_dssp HHHHHHHHHHHHHTTCC---EEEEECCGGGSCSSCSEEEEEEEEETTTTEEEEEEEEEECTTTTHHH
T ss_pred HHHHHHHHHHHHHcCCc---eEEEECCCccccChhhceeeeeeecCcCCcccEEEeeccchhhHhhc
Confidence 67788889999999998 466777789999999999999999986 799999999999998543
No 11
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=99.94 E-value=2.2e-27 Score=240.05 Aligned_cols=171 Identities=17% Similarity=0.182 Sum_probs=151.5
Q ss_pred cCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCCC
Q 041441 5 KENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLS 84 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (310)
+.|+.||-+|.|++.++|++|||+++|.|-|+....
T Consensus 291 ~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~~-------------------------------------------- 326 (536)
T 3err_A 291 RRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE-------------------------------------------- 326 (536)
T ss_dssp HTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEETT--------------------------------------------
T ss_pred HcCCEEEeccccccHHHHHhcCCcccChhhceEecC--------------------------------------------
Confidence 579999999999999999999999999998773110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeeccccc
Q 041441 85 VEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAF 164 (310)
Q Consensus 85 ~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~f 164 (310)
..-||+|-..+++...|++...||+ +||++++|+|+||
T Consensus 327 -----------------------------------------~~~~L~PT~E~~~~~l~~~~i~s~~-~LPlr~~~~~~~f 364 (536)
T 3err_A 327 -----------------------------------------TDLYLTGTAEVVLNALHSGEILPYE-ALPLRYAGYAPAF 364 (536)
T ss_dssp -----------------------------------------TTEEECSSTHHHHHHHTTTCEEEGG-GCSEEEEEEEEEE
T ss_pred -----------------------------------------CCEEEccCCcHHHHHHHhcccccHh-hCCeeEEEecccc
Confidence 1368999999998888888888999 8999999999999
Q ss_pred ccccC----CCCccccccccccccceeeeCCC--CCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChH
Q 041441 165 RNEIS----PRQGFSRVREFTLAEIEHFVDPK--DKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNE 238 (310)
Q Consensus 165 RNEiS----pr~GL~RvREFtQ~E~e~F~~P~--q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e 238 (310)
|+|++ +++||+|||||+|.|+++||+|+ |. .+
T Consensus 365 R~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s------------------------------------------~~ 402 (536)
T 3err_A 365 RSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEAS------------------------------------------DR 402 (536)
T ss_dssp CCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHH------------------------------------------HH
T ss_pred cCCccccCCCCCCceeeeeeEEEEEEEEECCchHHH------------------------------------------HH
Confidence 99994 37999999999999999999998 53 34
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCC--CeEEEeehccCcchhhhhh
Q 041441 239 TIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSY--GWIECVGIADRSAYDLRAH 306 (310)
Q Consensus 239 ~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~--Gw~E~~gia~R~~yDL~~H 306 (310)
.++.++.....+|+++|+++ |......|++.|++.+++|+|+.+|. ||.|+.+|++.|||+.+++
T Consensus 403 ~~e~~~~~~~~i~~~LgLpy---rvv~~~tgdlg~~a~~~yDiE~w~p~~~~~~Ei~s~sn~~dyqarr~ 469 (536)
T 3err_A 403 AFQELLENAEEILRLLELPY---RLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRA 469 (536)
T ss_dssp HHHHHHHHHHHHHHHTTCCE---EEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcE---EEEEcCCcccCCChhheeeeeEecCCCCCeEEEEEecCccChhhccc
Confidence 56667777888999999984 78888999999999999999999987 7999999999999999887
No 12
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=99.94 E-value=2.9e-27 Score=233.12 Aligned_cols=167 Identities=17% Similarity=0.314 Sum_probs=148.6
Q ss_pred cCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCCC
Q 041441 5 KENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLS 84 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (310)
+.|+.+|.+|+|++..+|++|||+++|.|.|+.+.
T Consensus 188 ~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--------------------------------------------- 222 (425)
T 2dq3_A 188 KKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCE--------------------------------------------- 222 (425)
T ss_dssp HTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCT---------------------------------------------
T ss_pred HcCCEEEECCccccHHHHHhcCCCCcChhhheEec---------------------------------------------
Confidence 67999999999999999999999999999887311
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeeccccc
Q 041441 85 VEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAF 164 (310)
Q Consensus 85 ~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~f 164 (310)
+ ...||||+.++++...|++.+.+++ +||++++|+|+||
T Consensus 223 ------------------~----------------------~~l~LrPt~e~~i~~~~~~~i~s~~-~LPlrl~~~g~~F 261 (425)
T 2dq3_A 223 ------------------R----------------------DNLYLIPTAEVPLTNLYREEILKEE-NLPIYLTAYTPCY 261 (425)
T ss_dssp ------------------T----------------------TCCEECSSTHHHHHGGGTTEEEETT-TCCEEEEEEEEEE
T ss_pred ------------------C----------------------CeEEEcCCCcHHHHHHHHhhccccc-cCCeEEEEecCEe
Confidence 0 1369999999999999999888887 8999999999999
Q ss_pred ccccCC----CCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChHHH
Q 041441 165 RNEISP----RQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETI 240 (310)
Q Consensus 165 RNEiSp----r~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~ 240 (310)
|+|.++ ++||+|+|||+|.|+|+||+|++. +++.
T Consensus 262 R~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s------------------------------------------~~~~ 299 (425)
T 2dq3_A 262 RREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTS------------------------------------------YDEL 299 (425)
T ss_dssp CCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGH------------------------------------------HHHH
T ss_pred cCCCCcccccccCcccccceEEeeEEEECCHHHH------------------------------------------HHHH
Confidence 999974 899999999999999999999764 3456
Q ss_pred HHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCC--CeEEEeehccCcchh
Q 041441 241 GYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSY--GWIECVGIADRSAYD 302 (310)
Q Consensus 241 ~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~--Gw~E~~gia~R~~yD 302 (310)
+.++.....+|+++|++ +|...+..+++.|++.++.|+|+..+. +|.|+.+|++.+||.
T Consensus 300 ~e~i~~~~~il~~LGL~---~rvv~l~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~sn~~Dfq 360 (425)
T 2dq3_A 300 EKLVKDAEEVLQLLGLP---YRVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDFQ 360 (425)
T ss_dssp HHHHHHHHHHHHHHTCC---EEEEECCTTTCCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHH
T ss_pred HHHHHHHHHHHHHCCCc---eEEEEecCCcCCChHHhccchhhccchhHHHHHHHHcCCccccC
Confidence 67788889999999998 455567899999999999999999976 999999999999996
No 13
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=99.94 E-value=2.1e-27 Score=234.00 Aligned_cols=168 Identities=17% Similarity=0.184 Sum_probs=147.3
Q ss_pred cCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCCC
Q 041441 5 KENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLS 84 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (310)
+.|+.+|.+|+|++.++|++|||+++|.|.|+.|+.
T Consensus 182 ~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d-------------------------------------------- 217 (421)
T 1ses_A 182 RRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE-------------------------------------------- 217 (421)
T ss_dssp HTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTT--------------------------------------------
T ss_pred HcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEcC--------------------------------------------
Confidence 679999999999999999999999999999995421
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeeccccc
Q 041441 85 VEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAF 164 (310)
Q Consensus 85 ~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~f 164 (310)
..-||||+...++...|+....+++ +||++++|+|+||
T Consensus 218 -----------------------------------------~~l~L~Pt~e~~~~~~~~~~~~s~~-~LPlr~~~~g~~F 255 (421)
T 1ses_A 218 -----------------------------------------TDLYLTGTAEVVLNALHSGEILPYE-ALPLRYAGYAPAF 255 (421)
T ss_dssp -----------------------------------------SSEEECSSTHHHHHHTTTTCEEEGG-GCSEEEEEEEEEE
T ss_pred -----------------------------------------CeEEEeecCcHHHHHHhcccccCch-hCCEEEEecCCee
Confidence 0247888888888877777777887 8999999999999
Q ss_pred cccc----CCCCccccccccccccceeeeCC--CCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChH
Q 041441 165 RNEI----SPRQGFSRVREFTLAEIEHFVDP--KDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNE 238 (310)
Q Consensus 165 RNEi----Spr~GL~RvREFtQ~E~e~F~~P--~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e 238 (310)
|+|+ .|++||+|+|||+|.|++.||+| ++. ++
T Consensus 256 R~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s------------------------------------------~~ 293 (421)
T 1ses_A 256 RSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEAS------------------------------------------DR 293 (421)
T ss_dssp CCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHH------------------------------------------HH
T ss_pred cCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHH------------------------------------------HH
Confidence 9999 56899999999999999999999 553 35
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCC--CeEEEeehccCcchhh
Q 041441 239 TIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSY--GWIECVGIADRSAYDL 303 (310)
Q Consensus 239 ~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~--Gw~E~~gia~R~~yDL 303 (310)
+++.++.....+|+++||+ +|...+..+++.|++.+++|+|+..|- +|.|+.++++.+||+-
T Consensus 294 ~~~e~~~~~~~il~~LGL~---~rvv~l~t~dlg~~a~~~~DiE~w~p~~~~~~ei~s~s~~~Dfqa 357 (421)
T 1ses_A 294 AFQELLENAEEILRLLELP---YRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQA 357 (421)
T ss_dssp HHHHHHHHHHHHHHHTTCC---EEEEECCHHHHCTTCSEEEEEEEEETTTTEEEEEEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHCCCc---eEEEEecCccCCchhhhcccHhheechhccchheeeccccchhhh
Confidence 5677888889999999998 466678889999999999999999976 8999999999999983
No 14
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=99.93 E-value=1.2e-26 Score=233.65 Aligned_cols=184 Identities=18% Similarity=0.290 Sum_probs=150.4
Q ss_pred cCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCCC
Q 041441 5 KENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLS 84 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (310)
+.|+.||.+|.|++.++|+.|||+++|.|-|+.....+.- .
T Consensus 217 ~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~----------------~----------------------- 257 (522)
T 3vbb_A 217 SRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSE----------------K----------------------- 257 (522)
T ss_dssp HTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC---------------------------------------------
T ss_pred HcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCcc----------------c-----------------------
Confidence 5799999999999999999999999999999965442210 0
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeeccccc
Q 041441 85 VEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAF 164 (310)
Q Consensus 85 ~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~f 164 (310)
.+ + ..+..-||+|...+++...|+....+|+ +||++++|+|.||
T Consensus 258 --------~~-----~----------------------~~~~~l~L~PTaE~~l~~l~~~ei~s~~-dLPlr~~~~s~cF 301 (522)
T 3vbb_A 258 --------SD-----D----------------------NSYDEKYLIATSEQPIAALHRDEWLRPE-DLPIKYAGLSTCF 301 (522)
T ss_dssp -----------------------------------------CCEEECSSTHHHHHTTSTTCEECTT-TCCEEEEEEEEEE
T ss_pred --------cc-----c----------------------ccCcceeEcccCcHHHHHHHhhhecccc-cCCeeEEEecccc
Confidence 00 0 0112579999777887766777778888 8999999999999
Q ss_pred ccccCC----CCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChHHH
Q 041441 165 RNEISP----RQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETI 240 (310)
Q Consensus 165 RNEiSp----r~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~ 240 (310)
|+|.++ ++||+|||+|+|.|+++||+|++.. +.+.+
T Consensus 302 R~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~----------------------------------------s~~e~ 341 (522)
T 3vbb_A 302 RQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNK----------------------------------------SWEMF 341 (522)
T ss_dssp CSCCCC----CCCSSSCSEEEEEEEEEEECSSTTH----------------------------------------HHHHH
T ss_pred cCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHH----------------------------------------HHHHH
Confidence 999973 6999999999999999999998821 02445
Q ss_pred HHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCC--CeEEEeehccCcchhhhhh
Q 041441 241 GYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSY--GWIECVGIADRSAYDLRAH 306 (310)
Q Consensus 241 ~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~--Gw~E~~gia~R~~yDL~~H 306 (310)
+.++.....+|+++|+++ |......|++.|++.+++|+|+.+|. +|.|+++|++.|||...++
T Consensus 342 e~ml~~~e~il~~LGLpy---rvv~l~tgdlg~~asktyDiE~w~P~~~~y~EIsScSnc~DyqArr~ 406 (522)
T 3vbb_A 342 EEMITTAEEFYQSLGIPY---HIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRL 406 (522)
T ss_dssp HHHHHHHHHHHHHTTCCE---EEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCce---EEEEcCCccCCCchhheeceeEecCCCCceeEEEEecCCCCCcccee
Confidence 666777888999999984 77778889999999999999999988 7999999999999999887
No 15
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=99.93 E-value=1.3e-26 Score=231.75 Aligned_cols=175 Identities=17% Similarity=0.218 Sum_probs=151.2
Q ss_pred cCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCCC
Q 041441 5 KENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLS 84 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (310)
+.|+.||-+|.|++.++|+.|||+++|.|-|+....-
T Consensus 224 ~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~------------------------------------------- 260 (484)
T 3lss_A 224 KRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGD------------------------------------------- 260 (484)
T ss_dssp TTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESS-------------------------------------------
T ss_pred HcCCEEEecCccccHHHHHhcCCcccccccceEeecC-------------------------------------------
Confidence 5699999999999999999999999999988843210
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeeccccc
Q 041441 85 VEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAF 164 (310)
Q Consensus 85 ~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~f 164 (310)
+..-||+|-..+++...|+....||+ +||++++|+|.||
T Consensus 261 ----------------------------------------~~~~~L~PTaE~~l~~l~~~~i~sy~-dLPlr~~~~s~cF 299 (484)
T 3lss_A 261 ----------------------------------------GDKKYLIATSEMPIAAYHRGRWFTEL-KEPLKYAGMSTCF 299 (484)
T ss_dssp ----------------------------------------SSCEEECSSTHHHHHHHTTTCEESCC-SSCEEEEEEEEEE
T ss_pred ----------------------------------------CcceEEeccCcHHHHHHHhccccchh-hCCeeEEeecCcc
Confidence 12468999999999877888888998 8999999999999
Q ss_pred ccccCC----CCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChHHH
Q 041441 165 RNEISP----RQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETI 240 (310)
Q Consensus 165 RNEiSp----r~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~ 240 (310)
|+|.++ .+||+|||+|+|.|+++||+|+|.. +.+.+
T Consensus 300 R~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~----------------------------------------s~~e~ 339 (484)
T 3lss_A 300 RKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEE----------------------------------------SWRHL 339 (484)
T ss_dssp CCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTH----------------------------------------HHHHH
T ss_pred CCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHH----------------------------------------HHHHH
Confidence 999954 3999999999999999999999820 02445
Q ss_pred HHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCC--CeEEEeehccCcchhhhhh
Q 041441 241 GYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSY--GWIECVGIADRSAYDLRAH 306 (310)
Q Consensus 241 ~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~--Gw~E~~gia~R~~yDL~~H 306 (310)
+.++.....+|+++|+++ |......|++.|++.+++|+|+.+|- ||.|+++|++.+||...++
T Consensus 340 e~~~~~~e~il~~LGLpy---rvv~l~tgdlg~~a~~~yDiE~w~P~~~~~~EIsS~Snc~dyqArr~ 404 (484)
T 3lss_A 340 EDMITTSEEFNKSLGLPY---RVVNICSGALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQSV 404 (484)
T ss_dssp HHHHHHHHHHHHHHTCCE---EEEECCTTTCCSSCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcE---EEEEcCCcccCCchhheechheecCCCCCeeEEEEecCccccccccc
Confidence 566777788999999985 77788899999999999999999987 7999999999999999887
No 16
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=99.92 E-value=2.6e-25 Score=220.85 Aligned_cols=196 Identities=23% Similarity=0.221 Sum_probs=154.4
Q ss_pred cCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCCC
Q 041441 5 KENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLS 84 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (310)
+.|+.+|+||+|.|.++|++|||++.|.+.|+.. |+
T Consensus 65 ~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~---------d~----------------------------------- 100 (471)
T 3a32_A 65 RRGYYVVETPIIASTELFKVSGHIEFYRNNMYLF---------DI----------------------------------- 100 (471)
T ss_dssp HTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEE---------EE-----------------------------------
T ss_pred HcCCEEEECCeeeehHHhhhccCccccccceEEE---------ec-----------------------------------
Confidence 6799999999999999999999999999999853 11
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhcc--CCCCceeeeccc
Q 041441 85 VEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNG--NKLPFAAAQIGQ 162 (310)
Q Consensus 85 ~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r--~kLPf~iAqiGk 162 (310)
+ +...+|||+++++|+..|++.+.+|| .+||++++|+|+
T Consensus 101 ------------------~---------------------~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~ 141 (471)
T 3a32_A 101 ------------------E---------------------GHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGR 141 (471)
T ss_dssp ------------------T---------------------TEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEE
T ss_pred ------------------C---------------------CcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccc
Confidence 0 12579999999999999999999997 379999999999
Q ss_pred ccccccCCC-CccccccccccccceeeeCCCCCCccchhhhhhhhhhcchh-hhhhccc---cceEEEeccccc----cc
Q 041441 163 AFRNEISPR-QGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPR-EEQMSAQ---SAKKIRLGEAVS----RG 233 (310)
Q Consensus 163 ~fRNEiSpr-~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~-~~q~~~~---~~~~~s~~~a~~----~~ 233 (310)
|||||++++ +||+|+|||+|+|+|+||+|++. .+++..+.++...+|.. . +.. ..+.+.+++.+. ++
T Consensus 142 vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~~-~de~~e~i~~~~~~l~~~l---Gl~~~~~~~~l~i~~~~~~~~~e~ 217 (471)
T 3a32_A 142 VHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRV-IDVVYDVFEEMKLVLERLF---KLGVSSETFKVRLSMSDKSLIGKE 217 (471)
T ss_dssp EECCCCGGGCBTTTBCSEEEEEEEEEEEEGGGH-HHHHHHHHHHHHHHHHHTS---CCCCSTTTEEEEEECCCGGGBTTT
T ss_pred eeccCCCcccccceeEEEEEECCeEEEcChHHH-HHHHHHHHHHHHHHHHHhh---CCCcCCCCeEEEEecCCCCccccc
Confidence 999999996 99999999999999999999886 57778888888888876 4 331 346677776651 34
Q ss_pred cc-ChHHHHHHHHHHHHHHHH----cCCCCCCCceeeccCCccccccCceeeEEEEc---CCCeEEEee
Q 041441 234 IV-NNETIGYFIGRVYLFLSR----LGIDQDHLRFRQHLANEMAHYAADCWDAEIEC---SYGWIECVG 294 (310)
Q Consensus 234 ~i-~~e~~~y~~~~~~~~l~~----~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~---~~Gw~E~~g 294 (310)
+. ..+.|+.....+...+++ .|++. ...++..+||||+ +|..+.+ +.|-....|
T Consensus 218 ~~g~~~~~d~~~~~l~~~~~~~l~~~~~~~------~~~~~~~~~~gp~-i~~~l~d~~~~l~~~~~~g 279 (471)
T 3a32_A 218 FMGSKEEWEGAEEALREAASRINEKYGIDI------VELEGEAAFYGPK-LDFIMMVEESGVSKEWQMG 279 (471)
T ss_dssp BCSCHHHHHHHHHHHHHHHHHHHHHHCCEE------EEETTCSBTTBCE-EEEEEEEESSSCEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcCCce------EecccchhhCCCc-cceEEeccHHhhhhhheee
Confidence 43 347787777666555544 48763 5678899999997 7776655 445444444
No 17
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=99.91 E-value=3.1e-24 Score=215.52 Aligned_cols=173 Identities=18% Similarity=0.217 Sum_probs=145.3
Q ss_pred cCCeEEeecCccCChhhhhhcCCCCCCCC-CceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCC
Q 041441 5 KENMLEVRSPCVTPEVVLKASGHVEKLTD-QMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDL 83 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aSGHv~~F~D-~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (310)
+.|+.+|-+|.|++.++|++|||+.+|.| -|+.....
T Consensus 235 ~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~------------------------------------------ 272 (501)
T 1wle_A 235 HRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPS------------------------------------------ 272 (501)
T ss_dssp HTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTT------------------------------------------
T ss_pred HcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecC------------------------------------------
Confidence 56999999999999999999999999998 77743110
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeecccc
Q 041441 84 SVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQA 163 (310)
Q Consensus 84 ~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~ 163 (310)
+ +..-||||...+++...|+....+|+ +||++++|+|+|
T Consensus 273 --------------------~--------------------~~~l~L~PTaE~~~~~l~~~~i~s~~-~LPlrl~~~s~~ 311 (501)
T 1wle_A 273 --------------------R--------------------FEDLNLAGTAEVGLAGYFMDHSVAFR-DLPIRMVCSSTC 311 (501)
T ss_dssp --------------------T--------------------SSSCEECSSHHHHHHHHHTTEEEEGG-GCSEEEEEEEEE
T ss_pred --------------------C--------------------CCeEEECCcCcHHHHHHHhhccCCcc-cCCeeEEeccCc
Confidence 0 12469999666666666666777787 899999999999
Q ss_pred cccccC---CCCccccccccccccceeeeCCC--CCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChH
Q 041441 164 FRNEIS---PRQGFSRVREFTLAEIEHFVDPK--DKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNE 238 (310)
Q Consensus 164 fRNEiS---pr~GL~RvREFtQ~E~e~F~~P~--q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e 238 (310)
||+|++ +++||+|||||+|.|+++||+|+ |. .+
T Consensus 312 FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s------------------------------------------~~ 349 (501)
T 1wle_A 312 YRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQS------------------------------------------SE 349 (501)
T ss_dssp ECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHH------------------------------------------HH
T ss_pred ccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHH------------------------------------------HH
Confidence 999998 48999999999999999999996 43 35
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCC--CeEEEeehccCcchhhhh
Q 041441 239 TIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSY--GWIECVGIADRSAYDLRA 305 (310)
Q Consensus 239 ~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~--Gw~E~~gia~R~~yDL~~ 305 (310)
+++.++.....+|+++||++ |......+++.|++.+++|+|+.+|- +|.|+..+++.+||...+
T Consensus 350 ~~e~~l~~~~~il~~LgLpy---rvv~l~tgdlg~~a~~~~DiE~w~p~~~~~~Ei~s~sn~~DfqarR 415 (501)
T 1wle_A 350 LLEEFLSLQMEILTELGLHF---RVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRR 415 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCE---EEEECCGGGSTTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCcE---EEEEccCcccCCchhheecHhhcccccccceeEEeccccccchhhh
Confidence 56677788889999999984 66667889999999999999999876 599999999999998654
No 18
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=99.91 E-value=8e-25 Score=218.35 Aligned_cols=160 Identities=18% Similarity=0.129 Sum_probs=117.3
Q ss_pred cCCeEEeecCccCChhhhhh-cCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCC
Q 041441 5 KENMLEVRSPCVTPEVVLKA-SGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDL 83 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~a-SGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (310)
+.|+.+|+||+|.|.++|++ |||++.|.+.|+..++.|.
T Consensus 60 ~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~---------------------------------------- 99 (477)
T 1hc7_A 60 ETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGG---------------------------------------- 99 (477)
T ss_dssp HTTCEECBCCSEEESTTC---------CCTTCEEEEEESS----------------------------------------
T ss_pred HcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCC----------------------------------------
Confidence 67999999999999999988 9999999999987655431
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeecccc
Q 041441 84 SVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQA 163 (310)
Q Consensus 84 ~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~ 163 (310)
.. .+...+||||++++|+..|++.+.||| +||++++|+|++
T Consensus 100 --------------------~~------------------l~~~l~LRP~~~~~i~~~~~~~~~s~r-~LP~rl~qig~v 140 (477)
T 1hc7_A 100 --------------------EE------------------LEEPLAVRPTSETVIGYMWSKWIRSWR-DLPQLLNQWGNV 140 (477)
T ss_dssp --------------------SE------------------EEEEEEECSCSHHHHHHHHHHHCCBGG-GCCEEEEEEEEE
T ss_pred --------------------cc------------------CCCeEEEcCCCcHHHHHHHHhhhhccc-cCCeeeEeecCE
Confidence 00 012579999999999999999999999 899999999999
Q ss_pred cccccCCCCcccccccccccccee-eeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChHHHHH
Q 041441 164 FRNEISPRQGFSRVREFTLAEIEH-FVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGY 242 (310)
Q Consensus 164 fRNEiSpr~GL~RvREFtQ~E~e~-F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~~y 242 (310)
||||++|+ ||+|+|||+|+|+|+ ||+|++. ++....
T Consensus 141 fR~E~~~r-Gl~R~REF~q~d~~~~~~~~~~a------------------------------------------d~E~~~ 177 (477)
T 1hc7_A 141 VRWEMRTR-PFLRTSEFLWQEGHTAHATREEA------------------------------------------EEEVRR 177 (477)
T ss_dssp ECCCSSCB-TTTBCSEEEEEEEEEEESSHHHH------------------------------------------HHHHHH
T ss_pred EeCCCCCC-CcceeEEEEEccEEEEeCCHHHH------------------------------------------HHHHHH
Confidence 99999988 999999999999999 7887664 122233
Q ss_pred HHHHHHHHH-HHcCCCCCCCceeeccCCccccccCceeeEEEEcCCCe
Q 041441 243 FIGRVYLFL-SRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGW 289 (310)
Q Consensus 243 ~~~~~~~~l-~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~Gw 289 (310)
++.....+| ..+||+ ++.......|..+.+.++||+++..+.|.
T Consensus 178 ~l~~~~~i~~~~Lgl~---~~~~~~~~~e~~~g~~~~~~ie~~~~dgr 222 (477)
T 1hc7_A 178 MLSIYARLAREYAAIP---VIEGLKTEKEKFAGAVYTTTIEALMKDGK 222 (477)
T ss_dssp HHHHHHHHHHHHHCCC---CEEEECCTTTSCTTSSEEEEEEEECTTSC
T ss_pred HHHHHHHHHHHhcCCe---EEEEeCChHHhcCCcccceEEEEEcCCCc
Confidence 444566777 678887 34433333333333347899999888764
No 19
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=99.90 E-value=2e-24 Score=216.64 Aligned_cols=173 Identities=18% Similarity=0.173 Sum_probs=141.5
Q ss_pred ecCCeEEeecCccCChhhhhh-cCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccC
Q 041441 4 LKENMLEVRSPCVTPEVVLKA-SGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDD 82 (310)
Q Consensus 4 ~~e~~~evdt~ii~~~~V~~a-SGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (310)
.+ |+.+|++|+|.|.++|++ |||++.|.+.|+.-...|. .
T Consensus 86 ~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~-----------------~--------------------- 126 (501)
T 1nj1_A 86 DR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGL-----------------S--------------------- 126 (501)
T ss_dssp TT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETT-----------------E---------------------
T ss_pred Hc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCC-----------------c---------------------
Confidence 36 999999999999999998 9999999999975433210 0
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeeccc
Q 041441 83 LSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQ 162 (310)
Q Consensus 83 ~~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk 162 (310)
+ .+...||||+++++++..|++...+|+ +||++++|+|.
T Consensus 127 -----------~-----------------------------~~~~l~LrPt~e~~i~~~~~~~~~s~~-~LPlr~~q~g~ 165 (501)
T 1nj1_A 127 -----------K-----------------------------LQRKLALRPTSETVMYPMFALWVRSHT-DLPMRFYQVVN 165 (501)
T ss_dssp -----------E-----------------------------EEEEEEECSSSHHHHHHHHHHHCCBTT-TCCEEEEEEEE
T ss_pred -----------c-----------------------------cCCeeEEccCCCHHHHHHHHhhhcccc-cCCEEEEeecC
Confidence 0 012579999999999999999999998 89999999999
Q ss_pred ccccccCCCCccccccccc-ccccee-eeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChHHH
Q 041441 163 AFRNEISPRQGFSRVREFT-LAEIEH-FVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETI 240 (310)
Q Consensus 163 ~fRNEiSpr~GL~RvREFt-Q~E~e~-F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~ 240 (310)
|||+|.+...||+|+|||+ |.|+|+ ||+|++. ++..
T Consensus 166 ~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a------------------------------------------~~e~ 203 (501)
T 1nj1_A 166 TFRYETKHTRPLIRVREITTFKEAHTIHATASEA------------------------------------------EEQV 203 (501)
T ss_dssp EECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHH------------------------------------------HHHH
T ss_pred EeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHH------------------------------------------HHHH
Confidence 9999998444999999999 999996 7888664 2333
Q ss_pred HHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCCC-eEEEeehccCcch
Q 041441 241 GYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYG-WIECVGIADRSAY 301 (310)
Q Consensus 241 ~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~G-w~E~~gia~R~~y 301 (310)
..++.....+|+.+||+ +|......+|+.++++++||+++..+.| +.|+..+.+-+++
T Consensus 204 ~~~l~~~~~i~~~Lgl~---~~~~~~~~~e~~~~a~~~~die~~l~~g~~~ei~t~~~lg~~ 262 (501)
T 1nj1_A 204 ERAVEIYKEFFNSLGIP---YLITRRPPWDKFPGSEYTVAFDTLMPDGKTLQIGTVHNLGQT 262 (501)
T ss_dssp HHHHHHHHHHHHHHTCC---CEEEECCTTTSCTTCSEEEEEEEECTTSCEEEEEEEEEEETH
T ss_pred HHHHHHHHHHHHHCCCe---EEEEeCCchhhcCCcccceEEEEEcCCCCEEEEEEEEecccc
Confidence 44566777888999998 4666666789999999999999999888 7888877755543
No 20
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=99.89 E-value=1.2e-24 Score=219.44 Aligned_cols=165 Identities=21% Similarity=0.268 Sum_probs=127.1
Q ss_pred cCCeEEeecCccCChhhhh-hcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCC
Q 041441 5 KENMLEVRSPCVTPEVVLK-ASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDL 83 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~-aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (310)
+.|+.+|.+|+|.|.++|+ .|||++.|.+.|+.++..|..
T Consensus 71 ~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~--------------------------------------- 111 (518)
T 3ial_A 71 KVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQ--------------------------------------- 111 (518)
T ss_dssp HTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTE---------------------------------------
T ss_pred HcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCc---------------------------------------
Confidence 5699999999999999995 799999999999977654310
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeecccc
Q 041441 84 SVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQA 163 (310)
Q Consensus 84 ~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~ 163 (310)
+ .+...+|||+.+++|+..|++.++||| +||++++|+|+|
T Consensus 112 ----------------~-----------------------~~~~l~LrPt~e~~i~~~~~~~i~Syr-dLPlrl~q~~~~ 151 (518)
T 3ial_A 112 ----------------P-----------------------LEERLALRPTSETAIYSMFSKWVRSYK-DLPLKIHQTCTI 151 (518)
T ss_dssp ----------------E-----------------------EEEEEEECSSSHHHHHHHHHHHCCBGG-GCCEEEEEEEEE
T ss_pred ----------------c-----------------------cCcceeECCCCcHHHHHHHHhhhcccc-cCCeEEEEEece
Confidence 0 012579999999999999999999998 899999999999
Q ss_pred cccccCCCCccccccccccccceee-eCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChHHHHH
Q 041441 164 FRNEISPRQGFSRVREFTLAEIEHF-VDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGY 242 (310)
Q Consensus 164 fRNEiSpr~GL~RvREFtQ~E~e~F-~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~~y 242 (310)
||+|++|++||+|+|||+|.|+|+| |+|++. .. .+..
T Consensus 152 fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a-~~-----------------------------------------e~~~ 189 (518)
T 3ial_A 152 FRHETKNTKPLIRVREIHWNEAHCCHATAEDA-VS-----------------------------------------QLSD 189 (518)
T ss_dssp ECTTCCSCBTTTBCSEEEEEEEEEEESSHHHH-HH-----------------------------------------HHHH
T ss_pred ecCCCCCCCCCceeeEEEEeeEEEEECCHHHH-HH-----------------------------------------HHHH
Confidence 9999999999999999999999999 898775 12 2233
Q ss_pred HHHHHHHHH-HHcCCCCCCCceeeccCCccccccCceeeEEEEcCCCe-EEEe
Q 041441 243 FIGRVYLFL-SRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGW-IECV 293 (310)
Q Consensus 243 ~~~~~~~~l-~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~Gw-~E~~ 293 (310)
++.....++ ..+||++...+--......+|||++ |+|+..|.|+ .|+.
T Consensus 190 ~l~~~~~i~~~~LGlp~~~~~~~~~e~~~gA~yt~---~iE~~~pdgr~ie~g 239 (518)
T 3ial_A 190 YWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSE---VSDVVMPCGRVLQTA 239 (518)
T ss_dssp HHHHHHHHHTTTTCCCCEEEEECGGGCCTTCSEEE---EEEEECTTSCEEEEE
T ss_pred HHHHHHHHHHHhcCCcEEeeecChhhccCCCccce---EEEEEcCCCCEEEEe
Confidence 444556677 7788875221111122344588865 5777888873 3443
No 21
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=99.89 E-value=6.6e-24 Score=214.01 Aligned_cols=166 Identities=18% Similarity=0.157 Sum_probs=131.4
Q ss_pred cCCeEEeecCccCChhhhhh-cCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCC
Q 041441 5 KENMLEVRSPCVTPEVVLKA-SGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDL 83 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~a-SGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (310)
+.|+.+|.+|+|.+.++|+. |||++.|.+-|+.-+..+.
T Consensus 77 ~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~---------------------------------------- 116 (519)
T 4hvc_A 77 KLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGK---------------------------------------- 116 (519)
T ss_dssp HTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETT----------------------------------------
T ss_pred HcCCEEEeccccccHHHHhcccCCcccccccceEEeccCC----------------------------------------
Confidence 56999999999999999995 9999999999874332110
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeecccc
Q 041441 84 SVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQA 163 (310)
Q Consensus 84 ~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~ 163 (310)
.+ -+...+|||+.+++|+..|++.++||| +||++++|+|.|
T Consensus 117 --------------------~~------------------l~e~l~LrPtse~~i~~~~~~~i~Syr-dLPlrl~q~g~~ 157 (519)
T 4hvc_A 117 --------------------TE------------------LAEPIAIRPTSETVMYPAYAKWVQSHR-DLPIKLNQWCNV 157 (519)
T ss_dssp --------------------EE------------------EEEEEEECSSSHHHHHHHHHHHCSSGG-GCCEEEEEEEEE
T ss_pred --------------------cc------------------cccceeeCCCCcHHHHHHHHhhccccc-cCCeEEEEEcCe
Confidence 00 012579999999999999999999999 899999999999
Q ss_pred cccccCCCCcccccccccccccee-eeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChHHHHH
Q 041441 164 FRNEISPRQGFSRVREFTLAEIEH-FVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGY 242 (310)
Q Consensus 164 fRNEiSpr~GL~RvREFtQ~E~e~-F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~~y 242 (310)
||+|++|.+||+|+|||+|.|+|+ ||+|+|. ++.+..
T Consensus 158 fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a------------------------------------------~~E~~~ 195 (519)
T 4hvc_A 158 VRWEFKHPQPFLRTREFLWQEGHSAFATMEEA------------------------------------------AEEVLQ 195 (519)
T ss_dssp ECCCCSCCBTTTBCSEEEEEEEEEEESSHHHH------------------------------------------HHHHHH
T ss_pred eeCCCCCCCCCcceeEEEEeeEEEEecCHHHH------------------------------------------HHHHHH
Confidence 999999999999999999999997 9999885 122334
Q ss_pred HHHHHHHHHHHc-CCCCCCCceeeccCCccccccCceeeEEEEcC-CCeEEEee
Q 041441 243 FIGRVYLFLSRL-GIDQDHLRFRQHLANEMAHYAADCWDAEIECS-YGWIECVG 294 (310)
Q Consensus 243 ~~~~~~~~l~~~-Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~-~Gw~E~~g 294 (310)
++.....+++++ |+|+-.. + -...|..+.+.++||+|...| .|+...+|
T Consensus 196 ~l~~~~~i~~~ll~lp~~~~--~-~t~~e~~~Ga~~t~~iEa~~p~~gr~~q~g 246 (519)
T 4hvc_A 196 ILDLYAQVYEELLAIPVVKG--R-KTEKEKFAGGDYTTTIEAFISASGRAIQGG 246 (519)
T ss_dssp HHHHHHHHHHTTSCCCCEEE--E-CCTTTSCTTSSEEEEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHHHHhcCCcceee--e-cCCccccCCchhheeeeeeeccCCCEEeec
Confidence 555666778876 8887221 2 234567778899999997764 78665554
No 22
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=99.89 E-value=7e-24 Score=211.99 Aligned_cols=173 Identities=19% Similarity=0.290 Sum_probs=138.1
Q ss_pred cCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCCC
Q 041441 5 KENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLS 84 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (310)
+.|+.||-+|.|++.++|++|||+++|.|-|+.....+
T Consensus 201 ~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~~------------------------------------------ 238 (485)
T 3qne_A 201 SKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGE------------------------------------------ 238 (485)
T ss_dssp TTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEETT------------------------------------------
T ss_pred HcCCEEEeCCccccHHHHhhcCCccccccceEEEeCCC------------------------------------------
Confidence 56999999999999999999999999999998643211
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhh-hhhh-ccCCCCceeeeccc
Q 041441 85 VEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKD-LYYN-NGNKLPFAAAQIGQ 162 (310)
Q Consensus 85 ~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~-~l~s-~r~kLPf~iAqiGk 162 (310)
..-||+|---..+...|.+ .+.| |+ +||++++|+|.
T Consensus 239 -----------------------------------------~~~~LipTaE~pl~~l~~~ei~~S~y~-dLPlr~~~~s~ 276 (485)
T 3qne_A 239 -----------------------------------------DEKYLIATSEQPISAYHAGEWFESPAE-QLPVRYAGYSS 276 (485)
T ss_dssp -----------------------------------------EEEEECSSTHHHHHHHTTTCEESSHHH-HCCEEEEEEEE
T ss_pred -----------------------------------------CeEEEeccccHHHHHHHhccccccchh-cCCeeEEEecc
Confidence 0123333111112222444 3334 77 89999999999
Q ss_pred ccccccCC----CCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChH
Q 041441 163 AFRNEISP----RQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNE 238 (310)
Q Consensus 163 ~fRNEiSp----r~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e 238 (310)
|||+|.++ ++||+|+|||+|.|+++||+|++. .+
T Consensus 277 cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~s------------------------------------------~~ 314 (485)
T 3qne_A 277 CFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKS------------------------------------------WE 314 (485)
T ss_dssp EECSCCC-----CCSSSSCSEEEEEEEEEEECGGGH------------------------------------------HH
T ss_pred cccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHHH------------------------------------------HH
Confidence 99999975 699999999999999999999774 24
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCC--CeEEEeehccCcchhhhhh
Q 041441 239 TIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSY--GWIECVGIADRSAYDLRAH 306 (310)
Q Consensus 239 ~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~--Gw~E~~gia~R~~yDL~~H 306 (310)
.++..+.....+|+++|+++ |......|++.|++.+++|+|+.+|. +|.|+.+|++.+||.-.++
T Consensus 315 e~e~ml~~~e~il~~LgLpy---rvv~~~tgdlg~~a~~tyDiE~w~P~~~~~~Eiss~Snc~dyqArr~ 381 (485)
T 3qne_A 315 EFDRMIGCSEEFYQSLGLPY---RVVGIVSGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNL 381 (485)
T ss_dssp HHHHHHHHHHHHHHHTTCCE---EEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCcE---EEEEcCCcccCCchhhheeeeEeccCCCceeEEEEecCCcCcccccc
Confidence 45556667788999999985 66677889999999999999999987 7999999999999998776
No 23
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=99.88 E-value=2.3e-23 Score=210.53 Aligned_cols=104 Identities=22% Similarity=0.319 Sum_probs=95.9
Q ss_pred cCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCCC
Q 041441 5 KENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLS 84 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (310)
+.|+.||+||+|.+.++|++|||++.|.+.|+.++..+
T Consensus 63 ~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~~------------------------------------------ 100 (572)
T 2j3l_A 63 KIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRN------------------------------------------ 100 (572)
T ss_dssp TTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECTT------------------------------------------
T ss_pred HcCCEEEECCccccHHHHHhcCCccccchheEEEecCC------------------------------------------
Confidence 67999999999999999999999999999999775422
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeeccccc
Q 041441 85 VEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAF 164 (310)
Q Consensus 85 ~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~f 164 (310)
+ ...+||||++++++..|++.+++|+ +||++++|+|++|
T Consensus 101 -------------------~---------------------~~~~LrP~~~~~~~~~~~~~~~s~~-~lP~r~~~~g~~f 139 (572)
T 2j3l_A 101 -------------------D---------------------RDYILGPTHEETFTELIRDEINSYK-RLPLNLYQIQTKY 139 (572)
T ss_dssp -------------------C---------------------CEEEECSCCHHHHHHHHHHHCCBGG-GCCEEEEEEEEEE
T ss_pred -------------------C---------------------CeEEEccccHHHHHHHHHhhccChh-hcCHhhheecCee
Confidence 1 2469999999999999999999999 7999999999999
Q ss_pred ccccCCCCccccccccccccceeeeCC
Q 041441 165 RNEISPRQGFSRVREFTLAEIEHFVDP 191 (310)
Q Consensus 165 RNEiSpr~GL~RvREFtQ~E~e~F~~P 191 (310)
|||++|++||+|+|||+|+|+|+||.+
T Consensus 140 R~E~~~~~Gl~R~ReF~q~d~~~f~~~ 166 (572)
T 2j3l_A 140 RDEKRSRSGLLRGREFIMKDGYSFHAD 166 (572)
T ss_dssp CCCSSCCTGGGSCSEEEEEEEEEEESS
T ss_pred ccCcCcccCccccceeEEeeeEEEcCC
Confidence 999999999999999999999999994
No 24
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=99.88 E-value=9.8e-23 Score=202.24 Aligned_cols=167 Identities=18% Similarity=0.174 Sum_probs=130.7
Q ss_pred cCCeEEeecCccCChhhhhh-cCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCC
Q 041441 5 KENMLEVRSPCVTPEVVLKA-SGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDL 83 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~a-SGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (310)
+.|+.+|.+|+|.|.++|+. |||++.|.+-|+.-+.-|.
T Consensus 54 ~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~---------------------------------------- 93 (459)
T 1nj8_A 54 ESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGK---------------------------------------- 93 (459)
T ss_dssp HTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSS----------------------------------------
T ss_pred HcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCc----------------------------------------
Confidence 56899999999999999985 9999999888774322110
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeecccc
Q 041441 84 SVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQA 163 (310)
Q Consensus 84 ~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~ 163 (310)
. ..+...+||||++++|+..|++.+.||| +||++++|+|+|
T Consensus 94 --------------------~------------------~~~~~l~LRP~~~~~i~~~~~~~~~s~r-~LP~rl~qig~~ 134 (459)
T 1nj8_A 94 --------------------T------------------QLDVKLALRPTSETPIYYMMKLWVKVHT-DLPIKIYQIVNT 134 (459)
T ss_dssp --------------------S------------------EEEEEEEECSSSHHHHHHHHHTTCCBTT-SCCCCEEEEECC
T ss_pred --------------------c------------------cCCCeeEECCCCcHHHHHHHHHhhhhcc-cCCeEEEEEccE
Confidence 0 0013689999999999999999999999 899999999999
Q ss_pred cccccCCCCccccccccc-ccccee-eeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChHHHH
Q 041441 164 FRNEISPRQGFSRVREFT-LAEIEH-FVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIG 241 (310)
Q Consensus 164 fRNEiSpr~GL~RvREFt-Q~E~e~-F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~~ 241 (310)
||||+++.+||+|+|||+ |.|+|+ ||+|++. ++.+.
T Consensus 135 fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a------------------------------------------~~e~~ 172 (459)
T 1nj8_A 135 FRYETKHTRPLIRLREIMTFKEAHTAHSTKEEA------------------------------------------ENQVK 172 (459)
T ss_dssp BCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHH------------------------------------------HHHHH
T ss_pred ecCccCCCCCceEeeeeeccCcEEEEECCHHHH------------------------------------------HHHHH
Confidence 999998444999999999 999997 6777654 22233
Q ss_pred HHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCCCeEEEeeh
Q 041441 242 YFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGI 295 (310)
Q Consensus 242 y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~Gw~E~~gi 295 (310)
.++.....+|..+||++ +...-.+.|..++++.+||+++..+.|+...+|.
T Consensus 173 ~~i~~~~~~~~~LGl~~---~~~~~~~~ek~~ga~~~~~ie~~~~dg~~~e~gt 223 (459)
T 1nj8_A 173 EAISIYKKFFDTLGIPY---LISKRPEWDKFPGAEYTMAFDTIFPDGRTMQIAT 223 (459)
T ss_dssp HHHHHHHHHHHHHTCCC---EEEEECTTSCCTTCSEEEEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCce---EEeecCchhhcCCcccceeEEEEcCCCcEEEEEE
Confidence 45566677888899974 2222234566778899999999999998777763
No 25
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=99.86 E-value=4.8e-22 Score=196.75 Aligned_cols=105 Identities=21% Similarity=0.281 Sum_probs=95.7
Q ss_pred ecCCeEEeecCccCChhhhhhcCCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCC
Q 041441 4 LKENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDL 83 (310)
Q Consensus 4 ~~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (310)
.+.|+.||+||+|.|.++|++|||++.|.+.|+.+++++
T Consensus 82 ~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~----------------------------------------- 120 (458)
T 2i4l_A 82 NRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRH----------------------------------------- 120 (458)
T ss_dssp HHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTT-----------------------------------------
T ss_pred HHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCC-----------------------------------------
Confidence 367999999999999999999999999999999876543
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeecccc
Q 041441 84 SVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQA 163 (310)
Q Consensus 84 ~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~ 163 (310)
+ ...+|||++++++...+++...+|+ +||++++|+|++
T Consensus 121 --------------------~---------------------~~~~LrPt~ee~t~~i~r~~~~s~~-~lP~rl~~ig~~ 158 (458)
T 2i4l_A 121 --------------------K---------------------RELLYGPTNEEMITEIFRAYIKSYK-SLPLNLYHIQWK 158 (458)
T ss_dssp --------------------C---------------------CEEEECSCCHHHHHHHHHHHCCBGG-GCSEEEEEEEEE
T ss_pred --------------------C---------------------CeEEECCCChHHHHHHHHHHHhhcc-ccCeeeEEecCE
Confidence 1 1468999999999999999999998 899999999999
Q ss_pred cccccCCCCccccccccccccceeeeCC
Q 041441 164 FRNEISPRQGFSRVREFTLAEIEHFVDP 191 (310)
Q Consensus 164 fRNEiSpr~GL~RvREFtQ~E~e~F~~P 191 (310)
||||++|++||+|+|||+|.|+|+|+.+
T Consensus 159 fR~E~~p~~Gl~R~REF~q~d~~~f~~~ 186 (458)
T 2i4l_A 159 FRDEQRPRFGVMRGREFLMKDAYSFDVD 186 (458)
T ss_dssp ECCCSSCBTGGGBCSEEEEEEEEEEESS
T ss_pred eeCCCCCCCCcccccceEEeEEEEEECC
Confidence 9999999999999999999999999953
No 26
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=99.80 E-value=5.2e-20 Score=176.96 Aligned_cols=186 Identities=15% Similarity=0.178 Sum_probs=135.9
Q ss_pred cCCeEEeecCccCChhhhhhcCCCCCCCCCceeecc-CCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCC
Q 041441 5 KENMLEVRSPCVTPEVVLKASGHVEKLTDQMVKDEK-TGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDL 83 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aSGHv~~F~D~mv~c~~-~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (310)
..|+.+|.+|.|++.++|++|||+++|.|.|+.+.. |+ |.
T Consensus 79 ~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~-----d~---------------------------------- 119 (346)
T 3mf2_A 79 EAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHG-----TE---------------------------------- 119 (346)
T ss_dssp CTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECS-----CH----------------------------------
T ss_pred hcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccc-----cc----------------------------------
Confidence 468999999999999999999999999999997632 22 10
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhh-hhhccCCCCceeeeccc
Q 041441 84 SVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDL-YYNNGNKLPFAAAQIGQ 162 (310)
Q Consensus 84 ~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~-l~s~r~kLPf~iAqiGk 162 (310)
.+-.+++... .-|..|++. ..+..-||.|=.+-+++..|++. ..+ +.|++++.+|.
T Consensus 120 --~e~~~ll~~~-----~~~~~~~~~-------------l~~~d~~LiPtacvpl~~~~~~eg~i~---~~plr~~~~g~ 176 (346)
T 3mf2_A 120 --REINAAVSRF-----DAGGDWTTS-------------LSPADLVLSPAACYPVYPIAASRGPLP---KGGLRFDVAAD 176 (346)
T ss_dssp --HHHHHHHHHH-----HTTSCGGGG-------------EEEEEEEECSSSSTTHHHHHHTTCSCC---TTCEEEEEEEE
T ss_pred --hhhhhhhhhh-----ccccccccc-------------cCCCCEEEcccccHHHHHHHccCCccc---ccCeEEEEECC
Confidence 0000111000 001211110 11235788998888899777753 333 45999999999
Q ss_pred ccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccccccccChHHHHH
Q 041441 163 AFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGY 242 (310)
Q Consensus 163 ~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~~y 242 (310)
|||+|.| +||+|||+|+|.|+++||+|+|+ .+..+.
T Consensus 177 CFR~EaS--~GL~RvhqF~kvE~v~~~tpEqs------------------------------------------~~e~e~ 212 (346)
T 3mf2_A 177 CFRREPS--KHLDRLQSFRMREYVCIGTPDDV------------------------------------------SDFRER 212 (346)
T ss_dssp EECCCCC--SSTTSCSEEEEEEEEEEESHHHH------------------------------------------HHHHHH
T ss_pred ccCCcCC--CCCeeeeeeEEEEEEEEeCHHHH------------------------------------------HHHHHH
Confidence 9999996 79999999999999999999886 234556
Q ss_pred HHHHHHHHHHHcCCCCCCCceeeccCCcccccc-------------CceeeEEEEcCC--CeEEEeehccCcchh
Q 041441 243 FIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYA-------------ADCWDAEIECSY--GWIECVGIADRSAYD 302 (310)
Q Consensus 243 ~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg-------------~k~~D~e~~~~~--Gw~E~~gia~R~~yD 302 (310)
+++....+|+++|+++ |....+++ ||+ .+++|+|+..|- -|.||..++|=+||-
T Consensus 213 l~~~ae~il~~LgLpy-----rv~~~~D~-~f~~~G~l~~~~Q~~~~~kyDlevw~p~~~~y~EisS~Sn~~dfq 281 (346)
T 3mf2_A 213 WMVRAQAIARDLGLTF-----RVDYASDP-FFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHF 281 (346)
T ss_dssp HHHHHHHHHHHTTCCC-----EEEECCCC-CCHHHHHHHHHHHHHTTCEEEEEECSSCSSSCEEEEEEEECTTHH
T ss_pred HHHHHHHHHHHCCCCE-----EEEEccCC-CcCcccchhhhccccccceEEEEEEcCCCCCeeEEEeeecccchh
Confidence 7778888999999986 54444553 444 578999998764 499999999988874
No 27
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=99.71 E-value=1.1e-17 Score=162.13 Aligned_cols=121 Identities=17% Similarity=0.254 Sum_probs=84.4
Q ss_pred cCCeEEeecCccCChhhhhhc--CCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccC
Q 041441 5 KENMLEVRSPCVTPEVVLKAS--GHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDD 82 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aS--GHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (310)
+.|+.+|+||+|.+.++|++| ||++.|.+.|+...+
T Consensus 32 ~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D------------------------------------------ 69 (420)
T 1qe0_A 32 FYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKD------------------------------------------ 69 (420)
T ss_dssp HHTCEECBCCSEEEHHHHCC-----------CCEEECH------------------------------------------
T ss_pred HcCCEEccCcccchHHHhhhccCCccchhhhheEEEEc------------------------------------------
Confidence 568999999999999999999 999999999984321
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeeccc
Q 041441 83 LSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQ 162 (310)
Q Consensus 83 ~~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk 162 (310)
.. + ...+|||++++++...|.+...+++++||++++|+|+
T Consensus 70 ----------~~---------g---------------------~~~~Lrp~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~ 109 (420)
T 1qe0_A 70 ----------KG---------D---------------------RSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGP 109 (420)
T ss_dssp ----------HH---------H---------------------CCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEE
T ss_pred ----------CC---------C---------------------CEEEeCCCChHHHHHHHHhccccccCCCCeEEEEecC
Confidence 00 1 2478999999999999987777772389999999999
Q ss_pred ccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhh
Q 041441 163 AFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPRE 213 (310)
Q Consensus 163 ~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~ 213 (310)
|||+| .|+. .|+|||+|.|+|+|+.+++. .+ .++..+...+|...
T Consensus 110 vfR~E-~~~~--gR~reF~q~~~e~~~~~~~~--~d-~e~i~~~~~~l~~l 154 (420)
T 1qe0_A 110 MFRYE-RKQK--GRYRQFNQFGVEAIGAENPS--VD-AEVLAMVMHIYQSF 154 (420)
T ss_dssp EECC----------CCEEEEEEEEEESCCCHH--HH-HHHHHHHHHHHHHT
T ss_pred EeecC-CCcC--CCcccEEEeeEEEECCCCch--hH-HHHHHHHHHHHHHc
Confidence 99999 5544 59999999999999998774 22 45556666666653
No 28
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=99.62 E-value=9.2e-16 Score=152.41 Aligned_cols=196 Identities=15% Similarity=0.138 Sum_probs=136.9
Q ss_pred cCCeEEeecCccCChhhhhhc-CC-CCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccC
Q 041441 5 KENMLEVRSPCVTPEVVLKAS-GH-VEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDD 82 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aS-GH-v~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (310)
+.|+.+|+||+|.+.++|+.| || ++.|.+.|++-.+-
T Consensus 62 ~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~----------------------------------------- 100 (467)
T 4e51_A 62 AYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDA----------------------------------------- 100 (467)
T ss_dssp HTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECT-----------------------------------------
T ss_pred HcCCEEEECCccccHHHhhhccCCcccccccceEEEecC-----------------------------------------
Confidence 579999999999999999999 99 78787777742210
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeeccc
Q 041441 83 LSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQ 162 (310)
Q Consensus 83 ~~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk 162 (310)
+. +..-.|||+..-++.-.|.+...++ +||++++++|.
T Consensus 101 ------------------~~----------------------g~~l~LRPd~t~~~ar~~~~~~~~~--~lP~r~~~~g~ 138 (467)
T 4e51_A 101 ------------------LN----------------------GENLTLRPENTAAVVRAAIEHNMLY--DGPKRLWYIGP 138 (467)
T ss_dssp ------------------TT----------------------CCEEEECSCSHHHHHHHHHHTTTTT--TSCEEEEEEEE
T ss_pred ------------------CC----------------------CCEEEeCcccHHHHHHHHHHccccc--CCCEEEEEEcc
Confidence 00 1256799999998888787766666 49999999999
Q ss_pred ccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecccc--c---------
Q 041441 163 AFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEAV--S--------- 231 (310)
Q Consensus 163 ~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a~--~--------- 231 (310)
|||+|.+.. .|+|||+|.++|+||.+++. .+ .++..+...+|..+ + ...+.|.++... +
T Consensus 139 vfR~E~~~~---gR~ReF~Q~d~ei~g~~~~~--ad-aEvi~l~~~~l~~l---G-l~~~~i~in~~g~~~~~~~~~~~l 208 (467)
T 4e51_A 139 MFRHERPQR---GRYRQFHQVGVEALGFAGPD--AD-AEIVMMCQRLWEDL---G-LTGIKLEINSLGLAEERAAHRVEL 208 (467)
T ss_dssp EECCCCC------CCSEEEEEEEEEETCCCSH--HH-HHHHHHHHHHHHHH---T-CCCEEEEEEECCCHHHHHHHHHHH
T ss_pred EEccCCCCC---CCcCceEEEEEEEEeCCChH--HH-HHHHHHHHHHHHHc---C-CCceEEEEeCCCchhhhHHHHHHH
Confidence 999996433 59999999999999998875 22 56778888888764 3 333444443320 0
Q ss_pred ----------------c----------------------------cccChHHHHHHHHHHHHHHHHcCCCCCCCceeecc
Q 041441 232 ----------------R----------------------------GIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHL 267 (310)
Q Consensus 232 ----------------~----------------------------~~i~~e~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~ 267 (310)
+ .+++++..+.| ..+...|..+|+++ ..+
T Consensus 209 ~~~l~~~~~~l~~~~~~~l~~~~l~~ld~k~~~~~~~l~~a~~l~~~l~~~~~~~l-~~l~~~L~~~gi~~------~~d 281 (467)
T 4e51_A 209 IKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSRAHF-EGLQRLLKANNVPF------TIN 281 (467)
T ss_dssp HHHHHTTGGGCCHHHHHHHTTCTHHHHTCCCGGGHHHHHTSCCGGGGCCHHHHHHH-HHHHHHHHHTTCCE------EEC
T ss_pred HHHHHHHHhccCHHHHHHHHhchHHHhhccchhHHHHHhhhHHHHHhhhHHHHHHH-HHHHHHHHHcCCeE------EEc
Confidence 0 01112222333 67889999999984 677
Q ss_pred CC---ccccccCceeeEEEEcCCCeEEEeehccCcchhh
Q 041441 268 AN---EMAHYAADCWDAEIECSYGWIECVGIADRSAYDL 303 (310)
Q Consensus 268 ~~---E~AhYg~k~~D~e~~~~~Gw~E~~gia~R~~yDL 303 (310)
++ +++||++. ++.-+....|.. ..|+.=|-||.
T Consensus 282 ~~lvRgl~YYtg~-vFe~~~~~~g~~--~tI~~GGRYD~ 317 (467)
T 4e51_A 282 PRLVRGLDYYNLT-VFEWVTDKLGAQ--GTVAAGGRYDP 317 (467)
T ss_dssp TTCCCSCTTCCSE-EEEEEECC------CEEEEEEECTH
T ss_pred CccccCccccCCe-EEEEEECCCCCc--ceecCCCcHHH
Confidence 78 99999987 777777777754 33444566764
No 29
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=99.41 E-value=7.7e-13 Score=128.36 Aligned_cols=131 Identities=18% Similarity=0.250 Sum_probs=98.3
Q ss_pred cCCeEEeecCccCChhhhhhc-CC-CCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccC
Q 041441 5 KENMLEVRSPCVTPEVVLKAS-GH-VEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDD 82 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aS-GH-v~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (310)
+-|+.||.||+|.|.++|+.| || ++.+.+-|+.-.+-
T Consensus 33 ~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~----------------------------------------- 71 (421)
T 1h4v_B 33 AAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDR----------------------------------------- 71 (421)
T ss_pred HcCCEEecccccccHHHhhhccCCcccccccceEEEECC-----------------------------------------
Confidence 568999999999999999999 99 88888887732110
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeeccc
Q 041441 83 LSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQ 162 (310)
Q Consensus 83 ~~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk 162 (310)
++ ..--||||..-++.-.+.+...+++ +||++++|+|+
T Consensus 72 --------------------~g---------------------~~l~Lrpd~t~~~ar~~~~~~~~~~-~lP~rl~~~g~ 109 (421)
T 1h4v_B 72 --------------------GG---------------------RSLTLRPEGTAAMVRAYLEHGMKVW-PQPVRLWMAGP 109 (421)
T ss_pred --------------------CC---------------------CEEeeCCcchHHHHHHHHhcccccc-CCCeEEEEecC
Confidence 01 2467999988888877765544556 89999999999
Q ss_pred ccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEecc
Q 041441 163 AFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGE 228 (310)
Q Consensus 163 ~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~ 228 (310)
+||+| .|+.| |.|||+|.++|+|+.+++.. -.++..+...+|.+. |.+.+.+.++.
T Consensus 110 vfR~e-~p~~g--R~REf~Q~g~e~~g~~~~~a---d~e~i~~~~~~l~~l----gl~~~~i~i~~ 165 (421)
T 1h4v_B 110 MFRAE-RPQKG--RYRQFHQVNYEALGSENPIL---DAEAVVLLYECLKEL----GLRRLKVKLSS 165 (421)
T ss_pred eecCC-CCCCC--CcccEEEccEEEECCCChhh---hHHHHHHHHHHHHHc----CCCceEEEEcC
Confidence 99999 56655 99999999999999877642 124666666666654 33335555554
No 30
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=99.36 E-value=4e-13 Score=128.71 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=91.6
Q ss_pred cCCeEEeecCccCChhhhhhc--CCCCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccC
Q 041441 5 KENMLEVRSPCVTPEVVLKAS--GHVEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDD 82 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aS--GHv~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (310)
+-|+.||+||+|.+.++|+.| ||++...+.|++-.+
T Consensus 52 ~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D------------------------------------------ 89 (344)
T 1z7m_A 52 LKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIK------------------------------------------ 89 (344)
T ss_dssp HTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEEC------------------------------------------
T ss_pred HcCCEEecCcccCcHHHHhhccCCccccccccEEEEEC------------------------------------------
Confidence 579999999999999999998 999887777763211
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeeccc
Q 041441 83 LSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQ 162 (310)
Q Consensus 83 ~~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk 162 (310)
. ++ ....||||...++--.+.+. ++ ++|++++++|+
T Consensus 90 -----------------~--~g---------------------~~l~LRpd~T~~~aR~~~~~---~~-~~P~rl~y~g~ 125 (344)
T 1z7m_A 90 -----------------H--EG---------------------QSITLRYDFTLPLVRLYSQI---KD-STSARYSYFGK 125 (344)
T ss_dssp -----------------T--TC---------------------CEEEECCCSHHHHHHHHHTC---CS-CCCEEEEEEEE
T ss_pred -----------------C--CC---------------------CEEecCCCCcHHHHHHHHhc---CC-CCCeEEEEECc
Confidence 0 01 25789999998877656553 44 79999999999
Q ss_pred ccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhhhhhccccceEEEeccc
Q 041441 163 AFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQMSAQSAKKIRLGEA 229 (310)
Q Consensus 163 ~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q~~~~~~~~~s~~~a 229 (310)
+||+| .|..| |.|||+|.++|+|+.++.. .+ .++..+...+|... + .+.+.+.+++.
T Consensus 126 vfR~e-~p~~g--R~REF~Q~g~ei~g~~~~~--aD-aEvi~l~~~~l~~l---g-l~~~~i~l~~~ 182 (344)
T 1z7m_A 126 IFRKE-KRHKG--RSTENYQIGIELFGESADK--SE-LEILSLALQVIEQL---G-LNKTVFEIGSA 182 (344)
T ss_dssp CCCCC-C---------CCEEEEEEEESSCHHH--HH-HHHHHHHHHHHHHH---T-CSSEEEEEEEH
T ss_pred EEccC-CCCCC--CcceeEEEEEEEEcCCCcH--HH-HHHHHHHHHHHHHC---C-CCcEEEEECCH
Confidence 99999 55555 9999999999999986532 22 36777777777764 3 33466666655
No 31
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=99.29 E-value=1.9e-12 Score=125.60 Aligned_cols=119 Identities=22% Similarity=0.186 Sum_probs=90.5
Q ss_pred cCCeEEeecCccCChhhhhhc-CC-CCCCCCCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccC
Q 041441 5 KENMLEVRSPCVTPEVVLKAS-GH-VEKLTDQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDD 82 (310)
Q Consensus 5 ~e~~~evdt~ii~~~~V~~aS-GH-v~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (310)
+-|+.||+||+|.|.++|+.| || ++.+.+-|+.-++-
T Consensus 34 ~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~----------------------------------------- 72 (423)
T 1htt_A 34 SYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR----------------------------------------- 72 (423)
T ss_dssp TTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECT-----------------------------------------
T ss_pred HcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcC-----------------------------------------
Confidence 579999999999999999999 98 77776666632210
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCCCCCcccceeeeeeeccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeeccc
Q 041441 83 LSVEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSVGPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQ 162 (310)
Q Consensus 83 ~~~~~~~~~i~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk 162 (310)
++..--||||..-++--.+.+. .+++ +||++++|+|+
T Consensus 73 -----------------------------------------~g~~l~Lrpd~t~~~aR~~~~~-~~~~-~~P~rl~~~g~ 109 (423)
T 1htt_A 73 -----------------------------------------NGDSLTLRPEGTAGCVRAGIEH-GLLY-NQEQRLWYIGP 109 (423)
T ss_dssp -----------------------------------------TSCEEEECSCSHHHHHHHHHHH-TCST-TCCEEEEEEEE
T ss_pred -----------------------------------------CCCEEEeCCCchHHHHHHHHhc-cccc-CCCeEEEEEcC
Confidence 0125679999988887766644 3455 79999999999
Q ss_pred ccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhhhhcchhh
Q 041441 163 AFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPRE 213 (310)
Q Consensus 163 ~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~ 213 (310)
+||+| .|+.| |.|||+|.++|+|+.+++. . -.++..+...+|.+.
T Consensus 110 vfR~e-~p~~g--R~Ref~Q~d~e~~g~~~~~--a-d~e~i~~~~~~l~~l 154 (423)
T 1htt_A 110 MFRHE-RPQKG--RYRQFHQLGCEVFGLQGPD--I-DAELIMLTARWWRAL 154 (423)
T ss_dssp EECCC-CCCSS--CCSEEEEEEEEEESCCSHH--H-HHHHHHHHHHHHHHH
T ss_pred EecCC-CCCCC--ccceeEEeeEEEECCCCch--h-hHHHHHHHHHHHHHC
Confidence 99999 56666 9999999999999987653 1 224566666666654
No 32
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.28 E-value=3.7e-12 Score=123.34 Aligned_cols=95 Identities=19% Similarity=0.178 Sum_probs=65.8
Q ss_pred ceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccCC-CC--ccccccccccccceeeeCCCCCCccchhhhh
Q 041441 127 AAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISP-RQ--GFSRVREFTLAEIEHFVDPKDKSHPKFSEVK 203 (310)
Q Consensus 127 ~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSp-r~--GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~ 203 (310)
.--||||..-++--.+.+.+.+ + .+|++++++|++||+|.+| ++ +.-|.|||+|.++|+|+.+++. ..+ .+|+
T Consensus 92 ~l~LRpd~T~~~aR~~~~~~~~-~-~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~-~aD-aEvi 167 (373)
T 3rac_A 92 AVALRPEMTPSIARMAAPRVAA-G-RTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASV-DVD-MDVL 167 (373)
T ss_dssp CEEECSSSHHHHHHHHHHHHHT-T-CCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCH-HHH-HHHH
T ss_pred EEEECCcCHHHHHHHHHhcccc-C-CCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCH-HHH-HHHH
Confidence 5679999887777667665543 4 7999999999999999876 44 6669999999999999998664 233 3677
Q ss_pred hhhhhcchhhhhhccccceEEEeccc
Q 041441 204 NLEFLMFPREEQMSAQSAKKIRLGEA 229 (310)
Q Consensus 204 d~~~~~~~~~~q~~~~~~~~~s~~~a 229 (310)
.+...+|..+ + .+.+.+.++++
T Consensus 168 ~l~~~~l~~l---g-l~~~~i~l~~~ 189 (373)
T 3rac_A 168 RLLHEASAAA---G-VRHHRIVVSHA 189 (373)
T ss_dssp HHHHHHHHHH---T-CCSCEEEEEET
T ss_pred HHHHHHHHHc---C-CCceEEEecCH
Confidence 8888888765 3 34456666544
No 33
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.26 E-value=2.2e-11 Score=114.23 Aligned_cols=110 Identities=21% Similarity=0.314 Sum_probs=80.6
Q ss_pred eecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhhh
Q 041441 128 AYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLEF 207 (310)
Q Consensus 128 ~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~~ 207 (310)
.+|||.|.-++...++...++ +++|++++++|+|||+|.+ |..|+|||+|.++++|+.+++.
T Consensus 125 ~~LRp~l~p~l~~~~r~~~~~--~~~PlrlfeiG~vFR~E~~---~~~r~~EF~qle~~i~g~~~~~------------- 186 (288)
T 3dsq_A 125 KCLRPMLAPNLYTLWRELERL--WDKPIRIFEIGTCYRKESQ---GAQHLNEFTMLNLTELGTPLEE------------- 186 (288)
T ss_dssp EEECSCSHHHHHHHHHHHTTT--SCSCEEEEEEEEEECSCCS---SSCCCSEEEEEEEEEETCCGGG-------------
T ss_pred hhhhhcChHHHHHHHHHHHhC--CCCCEEEEEEeeEEecCCC---CCCcCccEEEEEEEEEcCCchh-------------
Confidence 599999999988656655444 4899999999999999976 4458899999999999987432
Q ss_pred hcchhhhhhccccceEEEecccccccccChHHHHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcCC
Q 041441 208 LMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECSY 287 (310)
Q Consensus 208 ~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~~ 287 (310)
.+..-.+.+..+|+++|++ .++|..- ...++|. |.|+. .
T Consensus 187 -------------------------------~f~elkg~le~ll~~LGl~--~~~~~~~---s~e~~~~-~~~l~----~ 225 (288)
T 3dsq_A 187 -------------------------------RHQRLEDMARWVLEAAGIR--EFELVTE---SSVVYGD-TVDVM----K 225 (288)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHTCC--CCEEEEC---CCCSSCC-CEEEE----E
T ss_pred -------------------------------hHHHHHHHHHHHHHHcCCC--CcEEecC---CcceEEE-EEEEE----e
Confidence 1222345677888999995 2555542 2346664 46654 5
Q ss_pred CeEEEeehc
Q 041441 288 GWIECVGIA 296 (310)
Q Consensus 288 Gw~E~~gia 296 (310)
||.|+.|+.
T Consensus 226 ~~~eig~~G 234 (288)
T 3dsq_A 226 GDLELASGA 234 (288)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEEEE
Confidence 799998875
No 34
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=99.23 E-value=9e-12 Score=121.71 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=66.4
Q ss_pred ceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhh
Q 041441 127 AAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLE 206 (310)
Q Consensus 127 ~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~ 206 (310)
.--||||..-++--.+.+. +++ +||++++|+|++||+| .|+.| |.|||+|.++|+|+.+++. . -.++..+.
T Consensus 75 ~l~LrPd~t~~~aR~~~~~-~~~--~lP~rl~~~g~vfR~e-rp~~g--R~REF~Q~d~ei~g~~~~~--a-d~E~i~~~ 145 (434)
T 1wu7_A 75 EVTLIPEATPSTVRMVTSR-KDL--QRPLRWYSFPKVWRYE-EPQAG--RYREHYQFNADIFGSDSPE--A-DAEVIALA 145 (434)
T ss_dssp EEEECSCSHHHHHHHHTTC-TTC--CSSEEEEECCEEECCC-CSCSS--CCSEEEEEEEEEESCCSHH--H-HHHHHHHH
T ss_pred EEEeCCCChHHHHHHHHhc-CCC--CCCeEEEEEcCeecCC-CCCCC--CccceEEeeEEEEcCCChH--h-hHHHHHHH
Confidence 5679999888887777665 444 6999999999999999 56655 9999999999999987663 1 23456666
Q ss_pred hhcchhhhhhccccc-eEEEeccc
Q 041441 207 FLMFPREEQMSAQSA-KKIRLGEA 229 (310)
Q Consensus 207 ~~~~~~~~q~~~~~~-~~~s~~~a 229 (310)
..+|.+. +. +. +.+.+++.
T Consensus 146 ~~~l~~l---gl-~~~~~i~l~~~ 165 (434)
T 1wu7_A 146 SSILDRL---GL-QDIYEIRINSR 165 (434)
T ss_dssp HHHHHHT---TT-TTSEEEEEEEH
T ss_pred HHHHHHc---CC-CCceEEEECCh
Confidence 6666654 33 33 55555544
No 35
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=99.13 E-value=1.1e-11 Score=115.19 Aligned_cols=107 Identities=7% Similarity=-0.035 Sum_probs=73.2
Q ss_pred ceecCCCchhhHHHHHhhhhhhccCC-CCceeeecccccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhh
Q 041441 127 AAYVRPETAPGIFVNFKDLYYNNGNK-LPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNL 205 (310)
Q Consensus 127 ~~yLRPETAQgif~nFk~~l~s~r~k-LPf~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~ 205 (310)
.--||||..-++- .+.+. ++ . +|++++++|.|||+|.++. |||+|+++|+|+.+++. .+ .+|+.+
T Consensus 47 ~l~LRpd~T~~~a---~~~~~-~~-~~~p~R~~y~g~vfR~e~~~~------Ref~Q~g~ei~g~~~~~--~D-aEvi~l 112 (275)
T 1usy_A 47 LFSIREDFTKTVL---NHRKR-YS-PDSQIKVWYADFVYRYSGSDL------VAEYQLGLEKVPRNSLD--DS-LEVLEI 112 (275)
T ss_dssp EEEECCCHHHHHH---HHHTT-CT-TCCCEEEECCEEEEEEETTEE------EEEEEEEEEEESCCSHH--HH-HHHHHH
T ss_pred EEEeCCcChHHHH---HHHhh-cC-CCCceEEEEeceEEecCCCCC------CeeeEeCEEEecCCCch--hH-HHHHHH
Confidence 4679999777776 33332 44 6 9999999999999997655 99999999999998774 23 578888
Q ss_pred hhhcchhhhhhccccceEEEecccc-cccccChHHHHHHHHHHHHHHH
Q 041441 206 EFLMFPREEQMSAQSAKKIRLGEAV-SRGIVNNETIGYFIGRVYLFLS 252 (310)
Q Consensus 206 ~~~~~~~~~q~~~~~~~~~s~~~a~-~~~~i~~e~~~y~~~~~~~~l~ 252 (310)
...+|..+ + .+.+.|.++.+. -+++++. .|+-+...+..+|.
T Consensus 113 ~~~~l~~l---g-l~~~~i~l~~~~~~~~~~~~-~~~~~~~~l~~~l~ 155 (275)
T 1usy_A 113 IVESASEF---F-EGPVIVEIGHTGVYEDLLKE-IPKDLHEKVLNLID 155 (275)
T ss_dssp HHHHHHHH---C-CSCEEEEEEETTHHHHHHTT-SCGGGHHHHHHHHH
T ss_pred HHHHHHHc---C-CCCeEEEeCCHHHHHHHHHh-CCHHHHHHHHHHHH
Confidence 88888775 3 344666666652 3334432 33333444444443
No 36
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.08 E-value=7.8e-11 Score=115.05 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=64.9
Q ss_pred ceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhh
Q 041441 127 AAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLE 206 (310)
Q Consensus 127 ~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~ 206 (310)
.--||||..-++--.+.+.+. + ..+|++++++|.+||+|. |..| |.|||+|.++|+|+.++.. .+ .+|+.+.
T Consensus 78 ~l~LRpd~T~~~aR~~~~~~~-~-~~~P~r~~y~g~vfR~e~-~~~g--R~Ref~Q~g~ei~G~~~~~--aD-aEvi~l~ 149 (400)
T 3od1_A 78 TLVLRPDMTAPIARLVASSLK-D-RAYPLRLAYQSNVYRAQQ-NEGG--KPAEFEQLGVELIGDGTAS--AD-GEVIALM 149 (400)
T ss_dssp EEEECSCSHHHHHHHHHHHCS-S-SCSCEEEEEEEEEECCCC----C--CCSEEEEEEEEEESCCSHH--HH-HHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhhcc-c-CCCCeEEEEEcCEEeCCC-CCCC--CCCccEEeEEEEECCCChH--hH-HHHHHHH
Confidence 466999988877665555432 3 479999999999999994 4334 9999999999999987542 22 3577777
Q ss_pred hhcchhhhhhccccceEEEeccc
Q 041441 207 FLMFPREEQMSAQSAKKIRLGEA 229 (310)
Q Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~a 229 (310)
..+|..+ |.+.+.+.++.+
T Consensus 150 ~~~l~~l----gl~~~~i~l~~~ 168 (400)
T 3od1_A 150 IAALKRA----GLSEFKVAIGHV 168 (400)
T ss_dssp HHHHHHT----TCCSEEEEEEEH
T ss_pred HHHHHHC----CCCceEEEecCH
Confidence 7777764 334566666554
No 37
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=99.04 E-value=2.1e-10 Score=113.73 Aligned_cols=91 Identities=18% Similarity=0.118 Sum_probs=65.0
Q ss_pred ceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhh
Q 041441 127 AAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLE 206 (310)
Q Consensus 127 ~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~ 206 (310)
.--||||..-++--.+.+.. .++ .+|++++++|.+||+|. |..| |.|||+|.++|+|+.++.. .+ .+|+.+.
T Consensus 98 ~l~LRpd~T~~~aR~~~~~~-~~~-~~P~r~~y~g~vfR~e~-~~~g--R~ReF~Q~g~ei~G~~~~~--~D-aEvi~l~ 169 (456)
T 3lc0_A 98 RVALRPEMTPSLARLLLGKG-RSL-LLPAKWYSIPQCWRYEA-ITRG--RRREHYQWNMDIVGVKSVS--AE-VELVCAA 169 (456)
T ss_dssp EEEECSCSHHHHHHHHHHSC-TTC-CSSEEEEECCEEECCCC--------CCEEEEEEEEEESCCSTH--HH-HHHHHHH
T ss_pred EEecCCcCHHHHHHHHHhcC-ccc-CCCEEEEEeccEEecCC-CCCC--CccceEEEEEEEEcCCChH--hh-HHHHHHH
Confidence 56799998888876666543 244 79999999999999995 4344 9999999999999997653 22 3577777
Q ss_pred hhcchhhhhhccc-cceEEEecc
Q 041441 207 FLMFPREEQMSAQ-SAKKIRLGE 228 (310)
Q Consensus 207 ~~~~~~~~q~~~~-~~~~~s~~~ 228 (310)
..+|..+ +.. +.+.+.++.
T Consensus 170 ~~~l~~l---gl~~~~~~i~in~ 189 (456)
T 3lc0_A 170 CWAMRSL---GLSSKDVGIKVNS 189 (456)
T ss_dssp HHHHHHT---TCCTTTEEEEEEE
T ss_pred HHHHHHc---CCCCCceEEEEcC
Confidence 7777764 332 456666655
No 38
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=98.98 E-value=4.7e-10 Score=109.76 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=53.8
Q ss_pred ceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhh
Q 041441 127 AAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLE 206 (310)
Q Consensus 127 ~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~ 206 (310)
..-||||-.-++- |.+-+++ .+|++++++|.+||+| .|+.|..|.|||+|.++|+|..++.. ..+ .+++.+.
T Consensus 82 ~l~LRPd~T~~~a----R~~~~~~-~~p~k~~y~g~vfR~e-rp~~~~gR~Ref~Q~g~ei~G~~~~~-~aD-aEvi~l~ 153 (464)
T 4g84_A 82 LLSLRYDLTVPFA----RYLAMNK-LTNIKRYHIAKVYRRD-NPAMTRGRYREFYQCDFDIAGNFDPM-IPD-AECLKIM 153 (464)
T ss_dssp CEEECSCSHHHHH----HHHHHTT-CSCEEEEEEEEEECCC-C------CCSEEEEEEEEEESCCSTT-HHH-HHHHHHH
T ss_pred EEEeCCcCcHHHH----HHHHhcC-CCCceeEEEecceecc-CCccccCccceeeecceeccCCccch-hhH-HHHHHHH
Confidence 4669999544433 4444555 7999999999999999 77778889999999999999987664 222 2456666
Q ss_pred hhcchhh
Q 041441 207 FLMFPRE 213 (310)
Q Consensus 207 ~~~~~~~ 213 (310)
..++...
T Consensus 154 ~~~l~~l 160 (464)
T 4g84_A 154 CEILSSL 160 (464)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666654
No 39
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=98.88 E-value=5.5e-09 Score=103.48 Aligned_cols=91 Identities=20% Similarity=0.257 Sum_probs=63.2
Q ss_pred CceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccCCCCccccccccccccceeeeCCCCCCcc--chhhhh
Q 041441 126 TAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHP--KFSEVK 203 (310)
Q Consensus 126 ~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~--e~~~v~ 203 (310)
...-||||..-++--.+.+.. .+. .+|++++++|.|||+|. |..| |.|||+|.++|+|+.++.. . +. +|+
T Consensus 94 ~~l~LRpd~T~~~aR~~~~~~-~~~-~~p~r~~y~g~vfR~e~-~~~g--r~Ref~Q~g~ei~G~~~~~--a~~Da-Evi 165 (465)
T 3net_A 94 EARALKFDQTVPLAAYIARHL-NDL-TFPFARYQMDVVFRGER-AKDG--RFRQFRQCDIDVVGREKLS--LLYDA-QMP 165 (465)
T ss_dssp CCEEECSCSHHHHHHHHHHHG-GGS-CSSEEEEECCEEECBC---------CCEEEEEEEEEECSSCCC--HHHHH-HHH
T ss_pred CEEEeCCCChHHHHHHHHhcc-ccc-CCCeEEEEeccEEecCC-CCCC--CcceeEEeeEEEECCCCcc--chhhH-HHH
Confidence 357899998887765555544 244 69999999999999994 3344 9999999999999987642 2 22 577
Q ss_pred hhhhhcchhhhhhccccceEEEecc
Q 041441 204 NLEFLMFPREEQMSAQSAKKIRLGE 228 (310)
Q Consensus 204 d~~~~~~~~~~q~~~~~~~~~s~~~ 228 (310)
.+...++... + .+.+.|.++.
T Consensus 166 ~l~~~~l~~l---g-l~~~~i~in~ 186 (465)
T 3net_A 166 AIITEIFEAV---N-IGDFVIRINN 186 (465)
T ss_dssp HHHHHHHHHH---T-CSCEEEEEEE
T ss_pred HHHHHHHHHc---C-CCceEEEECC
Confidence 7777777664 3 3446666654
No 40
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=98.82 E-value=4.6e-09 Score=105.01 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=53.5
Q ss_pred ceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccCC-CCccccccccccccceeeeCCCCCCccchhhhhhh
Q 041441 127 AAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISP-RQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNL 205 (310)
Q Consensus 127 ~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSp-r~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~ 205 (310)
..-||||-.-++- |.+-+++ .+|++++++|.+||+|.++ .+| |.|||+|.++|+|++++.. .++. +++.+
T Consensus 135 ~l~LRPd~T~~~a----R~~~~~~-~~p~k~yyig~vfR~Erp~~~~G--R~ReF~Q~g~ei~G~~~~~-~aDa-Evi~l 205 (517)
T 4g85_A 135 LLSLRYDLTVPFA----RYLAMNK-LTNIKRYHIAKVYRRDNPAMTRG--RYREFYQCDFDIAGNFDPM-IPDA-ECLKI 205 (517)
T ss_dssp CEEECSCSHHHHH----HHHHHTT-CSCEEEEEEEEEECCCC---------CCEEEEEEEEEESCCCTT-HHHH-HHHHH
T ss_pred EEEeCCcCcHHHH----HHHHhCC-CCCceeEEEeceEeccCcccccC--ccceeeeeceeccCCccch-HHHH-HHHHH
Confidence 4669999554443 3344555 7999999999999999432 445 9999999999999988764 2222 46666
Q ss_pred hhhcchhh
Q 041441 206 EFLMFPRE 213 (310)
Q Consensus 206 ~~~~~~~~ 213 (310)
...++...
T Consensus 206 ~~~~l~~l 213 (517)
T 4g85_A 206 MCEILSSL 213 (517)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 66666654
No 41
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=98.78 E-value=2.7e-08 Score=92.78 Aligned_cols=104 Identities=20% Similarity=0.291 Sum_probs=69.1
Q ss_pred ceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhh
Q 041441 127 AAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLE 206 (310)
Q Consensus 127 ~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~ 206 (310)
..||||.++-+++...++.. .+..+|.++.|+|+|||+|-.. .-|.+||+|.|++++.....
T Consensus 130 ~~~LR~slsp~L~~~l~~n~--~~~~~p~rlfeiG~vFR~E~~~---~~~~~Ef~ql~~~~~g~~~~------------- 191 (290)
T 3qtc_A 130 NFCLRPMLTPNLYNYLRKLD--RALPDPIKIFEIGPCYRKESDG---KEHLEEFTMLVFWQMGSGCT------------- 191 (290)
T ss_dssp TEEECSCSHHHHHHHHHHHT--TTSCSSEEEEEEEEEECCCSCS---SSCCSEEEEEEEEEESTTCC-------------
T ss_pred CeeEcccChHHHHHHHHHhh--ccCCCCeEEEEEcCEEecCCCC---CcCcchheEEEEEEEcCChH-------------
Confidence 58999999999985555432 2347999999999999999432 34789999999999864311
Q ss_pred hhcchhhhhhccccceEEEecccccccccChHHHHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcC
Q 041441 207 FLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECS 286 (310)
Q Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~ 286 (310)
|..-.+.+..+|.++|++ +++. +....|+|+. .++.+
T Consensus 192 ---------------------------------f~elkg~le~ll~~lGl~---~~~~---~~~~~hpgr~-a~i~~--- 228 (290)
T 3qtc_A 192 ---------------------------------RENLESIITDFLNHLGID---FKIV---GDSCMVFGDT-LDVMH--- 228 (290)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHTCC---CEEE---C------CEE-EEEEE---
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCC---cEEe---CCCccccCCc-ccEee---
Confidence 122345567778889995 3444 3455688765 45432
Q ss_pred CCeEEE
Q 041441 287 YGWIEC 292 (310)
Q Consensus 287 ~Gw~E~ 292 (310)
||.++
T Consensus 229 -~~~~i 233 (290)
T 3qtc_A 229 -GDLEL 233 (290)
T ss_dssp -TTEEE
T ss_pred -CCEEE
Confidence 78776
No 42
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=98.26 E-value=7.4e-06 Score=76.76 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=69.8
Q ss_pred Cceeeeccccccccc--C--CCCcccccc-ccccccceeeeCCCCCCccchhhhhhhhhhcchhhhh-hc---c------
Q 041441 154 PFAAAQIGQAFRNEI--S--PRQGFSRVR-EFTLAEIEHFVDPKDKSHPKFSEVKNLEFLMFPREEQ-MS---A------ 218 (310)
Q Consensus 154 Pf~iAqiGk~fRNEi--S--pr~GL~RvR-EFtQ~E~e~F~~P~q~~~~e~~~v~d~~~~~~~~~~q-~~---~------ 218 (310)
|-++.|||+|||||- + +|| + ||||.|+|..-.. +..++++...++..... .. +
T Consensus 88 ~~rvf~ig~~FR~E~pq~~~~RH-----~~EFtqle~e~~~~~-------~~~l~~~~e~l~~~l~~~~~~~~~~~i~~~ 155 (294)
T 1nnh_A 88 LKKIFVLSPNIRLESRQKDDGRH-----AYEFTQLDFEVERAK-------MEDIMRLIERLVYGLFRKAEEWTGREFPKT 155 (294)
T ss_dssp CCEEEEEEEEECCCCGGGCSSSC-----CSEEEEEEEEEETCC-------HHHHHHHHHHHHHHHHHHHHHHHSSCCCCC
T ss_pred ccceEEEEccEeCCCCCCCCCcc-----ccceeEEEEEecCCC-------HHHHHHHHHHHHHHHHHHHHhhhccccccC
Confidence 789999999999997 5 455 6 9999999988652 23344444333333211 00 0
Q ss_pred ccceEEEecccccccccChHHHHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccC------ceeeEEEEcCCCeEEE
Q 041441 219 QSAKKIRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAA------DCWDAEIECSYGWIEC 292 (310)
Q Consensus 219 ~~~~~~s~~~a~~~~~i~~e~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~------k~~D~e~~~~~Gw~E~ 292 (310)
..-.+++..+|.++ ++.. +.+ -+.+ .+-.|-..-| .+||.+ .++|+ ..+-||.|+
T Consensus 156 ~~~~r~~y~ea~~~-~g~~-----~er-----~~~~----~~P~~v~~~P--~pf~~~~d~~~~~~~Dl--~~~~g~~Ei 216 (294)
T 1nnh_A 156 KRFEVFEYSEVLEE-FGSD-----EKA-----SQEM----EEPFWIINIP--REFYDREVDGFWRNYDL--ILPYGYGEV 216 (294)
T ss_dssp SSCEEEEHHHHHHH-TSSH-----HHH-----HHHC----SSCEEEECCC--CCTTBCEETTEECEEEE--EETTTTEEE
T ss_pred CCceEeEHHHHHHH-hCCh-----Hhh-----hhhc----CCCEEEEcCC--hHHhCCCCCCeEEEEEE--EECCCcEEE
Confidence 00244555566532 2221 011 1112 2335666666 899998 45666 334589999
Q ss_pred eehccC-cchhh
Q 041441 293 VGIADR-SAYDL 303 (310)
Q Consensus 293 ~gia~R-~~yDL 303 (310)
+|-..| .|++.
T Consensus 217 ~~g~~r~~d~~~ 228 (294)
T 1nnh_A 217 ASGGEREWEYEK 228 (294)
T ss_dssp EEEEEBCCCHHH
T ss_pred ecCeeecCCHHH
Confidence 998877 56664
No 43
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=96.77 E-value=0.0052 Score=61.85 Aligned_cols=113 Identities=22% Similarity=0.260 Sum_probs=72.4
Q ss_pred ceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccCCCCccccccccccccceeeeCCCCCCccchhhhhhhh
Q 041441 127 AAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNLE 206 (310)
Q Consensus 127 ~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~~ 206 (310)
...||+.|.-+..-...+..+ .++..|+++.++|+|||+|-... .++++|.|.|.-+ ++. ..
T Consensus 321 ~~vLRThtsp~~lr~l~~N~~-~~~~~PiriFeiGrVFR~d~~Da---tHlpeFhQlegl~-~~~-~v------------ 382 (508)
T 3l4g_A 321 KNLLRTHTTSASARALYRLAQ-KKPFTPVKYFSIDRVFRNETLDA---THLAEFHQIEGVV-ADH-GL------------ 382 (508)
T ss_dssp BEEECCCTHHHHHHHHHHHHT-SSSCCCEEEEEEEEEECCSCCCS---SSCSEEEEEEEEE-EEE-SC------------
T ss_pred cccccCCChHHHHHHHHHhhh-hcCCCCceEEEEccEEecCCCCC---CcCCeEEEEEEEE-ECC-CC------------
Confidence 468999999988754443322 13468999999999999995432 3457799998743 221 11
Q ss_pred hhcchhhhhhccccceEEEecccccccccChHHHHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEcC
Q 041441 207 FLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIECS 286 (310)
Q Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~~ 286 (310)
.+..-.+.+..++.++|+. .+||+.. .-.|.-|- ..+.+...
T Consensus 383 --------------------------------~f~dLKg~Le~~l~~lG~~--~~rfrps---~fPftePS-~ev~i~~~ 424 (508)
T 3l4g_A 383 --------------------------------TLGHLMGVLREFFTKLGIT--QLRFKPA---YNPYTEPS-MEVFSYHQ 424 (508)
T ss_dssp --------------------------------CHHHHHHHHHHHHHTTTCC--CCEEEEC---CCTTCSSE-EEEEECCS
T ss_pred --------------------------------CHHHHHHHHHHHHHHcCCc--ceEeecc---CCCCCCCe-EEEEEEEC
Confidence 1122345677788889863 5777753 33455554 44554433
Q ss_pred C--CeEEEeeh
Q 041441 287 Y--GWIECVGI 295 (310)
Q Consensus 287 ~--Gw~E~~gi 295 (310)
- ||.|+.|+
T Consensus 425 G~~~W~EIGg~ 435 (508)
T 3l4g_A 425 GLKKWVEVGNS 435 (508)
T ss_dssp TTSSCEEEEEE
T ss_pred CccceEEEEee
Confidence 2 49998876
No 44
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=96.71 E-value=0.0057 Score=61.89 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=44.0
Q ss_pred ceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccC-CCCccccccccccccceeee
Q 041441 127 AAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEIS-PRQGFSRVREFTLAEIEHFV 189 (310)
Q Consensus 127 ~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiS-pr~GL~RvREFtQ~E~e~F~ 189 (310)
...|||.|.-|.+..-...+ .|+..|+++.++|+|||++-. .. .+.+||+|.++-+.-
T Consensus 180 ~svLRTsLlPgLL~~lr~N~--~r~~~pvrLFEIG~VFr~d~~~d~---th~~Ef~qLagli~G 238 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHIA--DKLPLPIKLFSIDRCFRREQGEDA---TRLYTYFSASCVLVD 238 (534)
T ss_dssp EEEECSSHHHHHHHHHHTTT--TTSCSSEEEEEEEEEECCCTTCSS---SCCSEEEEEEEEEEC
T ss_pred ccccCccchhhHHHHHHHHH--hCCCCCeeEEEEeeEEecCccccc---cccceeeEEEEEEEC
Confidence 57899999999997555443 244799999999999998642 21 144899999988754
No 45
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=96.66 E-value=0.011 Score=60.09 Aligned_cols=114 Identities=19% Similarity=0.296 Sum_probs=74.6
Q ss_pred ceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccC-CCCccccccccccccceeeeCCCCCCccchhhhhhh
Q 041441 127 AAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEIS-PRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKNL 205 (310)
Q Consensus 127 ~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiS-pr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d~ 205 (310)
...|||.|..|++..-...+. |+..|+++.++|+|||++-. ... +.+||.|.++-+.=.+ .+
T Consensus 192 ~svLRTsLlPGLL~~vr~N~~--r~~~pvrlFEiGrVFr~D~~~d~t---h~~ef~qLaglv~G~~--vd---------- 254 (549)
T 2du7_A 192 TLTLRSHMTSGWFITLSSLIK--KRKLPLKLFSIDRCFRREQREDRS---HLMSYHSASCVVVGED--VS---------- 254 (549)
T ss_dssp EEECCSTTHHHHHHHHHTTTT--TSCSSEEEEEEEEECCCCSSCSSS---CCSCEEEEEEEEECTT--CC----------
T ss_pred ccccccccchhHHHHHHHHHh--cCCCCeEEEEEeeEEecCCcccCc---CCCcceEEEEEEECCC--CC----------
Confidence 478999999999976655543 45799999999999998642 222 3488999887665421 10
Q ss_pred hhhcchhhhhhccccceEEEecccccccccChHHHHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEEc
Q 041441 206 EFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIEC 285 (310)
Q Consensus 206 ~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~~ 285 (310)
+....+.+..+|..+|+. .+||+... .+.++|-|.+- +++..
T Consensus 255 ----------------------------------F~DLKG~Le~ll~~LGi~--~~rfrps~-~~~p~yhPGr~-AeI~v 296 (549)
T 2du7_A 255 ----------------------------------VDDGKVVAEGLLAQFGFT--KFKFKPDE-KKSKYYTPETQ-TEVYA 296 (549)
T ss_dssp ----------------------------------HHHHHHHHHHHHGGGTCC--CCCCEECT-TCCTTBCTTTC-EEEEE
T ss_pred ----------------------------------HHHHHHHHHHHHHHcCCC--eEEEEECC-CCCcccCCceE-EEEEE
Confidence 122345677788888974 57887531 12234666532 55543
Q ss_pred C--C--CeEEEeeh
Q 041441 286 S--Y--GWIECVGI 295 (310)
Q Consensus 286 ~--~--Gw~E~~gi 295 (310)
. - ||.|+.++
T Consensus 297 ~~~g~~gw~eIG~~ 310 (549)
T 2du7_A 297 YHPKLGEWIEVATF 310 (549)
T ss_dssp CCSSSSCSEEEEEE
T ss_pred ecCCCCCcEEEEEE
Confidence 2 2 89988765
No 46
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=96.58 E-value=0.015 Score=55.74 Aligned_cols=109 Identities=19% Similarity=0.233 Sum_probs=70.3
Q ss_pred CceecCCCchhhHHHHHhhhhhhccCCCCceeeeccccccccc-CCCCccccccccccccceeeeCCCCCCccchhhhhh
Q 041441 126 TAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEI-SPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKN 204 (310)
Q Consensus 126 ~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEi-Spr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d 204 (310)
....||+-|.-+.. +.+.. + ..|+++.|+|+||||+- +.. ...||+|.|.-+--. ..+
T Consensus 171 ~~~vLRt~tsp~ll----r~l~~-~-~~piriFEiGrVFR~d~~d~t----H~pEF~qlegl~~g~--~v~--------- 229 (350)
T 1b7y_A 171 GRLLLRTHTSPMQV----RYMVA-H-TPPFRIVVPGRVFRFEQTDAT----HEAVFHQLEGLVVGE--GIA--------- 229 (350)
T ss_dssp SCEEECSSSTHHHH----HHHHH-C-CSSEEEEEEEEEECCCCCCSS----CCSEEEEEEEEEEET--TCC---------
T ss_pred ccceeeccchHHHH----HHHHh-c-CCCeeEEEeeeEEECCCCCCC----CCChhHEEEEEEECC--CCC---------
Confidence 45789999999876 33333 3 68999999999999984 333 338999998765422 110
Q ss_pred hhhhcchhhhhhccccceEEEecccccccccChHHHHHHHHHHHHHHHHc-CCCCCCCceeeccCCccccccCceeeEEE
Q 041441 205 LEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGYFIGRVYLFLSRL-GIDQDHLRFRQHLANEMAHYAADCWDAEI 283 (310)
Q Consensus 205 ~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~~y~~~~~~~~l~~~-Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~ 283 (310)
+.--.+.+..++..+ |++ ..+||+. ..-.|..|. ..+.+
T Consensus 230 -----------------------------------f~dLKg~le~ll~~lfG~~-~~~r~rp---s~fPft~Ps-~e~~i 269 (350)
T 1b7y_A 230 -----------------------------------MAHLKGAIYELAQALFGPD-SKVRFQP---VYFPFVEPG-AQFAV 269 (350)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHSCSS-CCEEEEE---CCBTTEEEE-EEEEE
T ss_pred -----------------------------------HHHHHHHHHHHHHhhcCCC-ceEEEec---CCCCCCCCc-cEEEE
Confidence 122344567778777 865 3588875 233455555 44444
Q ss_pred Ec--CCCeEEEeeh
Q 041441 284 EC--SYGWIECVGI 295 (310)
Q Consensus 284 ~~--~~Gw~E~~gi 295 (310)
.. .-||.|+.|+
T Consensus 270 ~~~~~g~w~eIg~~ 283 (350)
T 1b7y_A 270 WWPEGGKWLELGGA 283 (350)
T ss_dssp EETTTTEEEEEEEE
T ss_pred EEEeCCCeEEEEEE
Confidence 43 2369998875
No 47
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=96.46 E-value=0.016 Score=54.00 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=38.4
Q ss_pred CceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccCCCCcccccccccccccee
Q 041441 126 TAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEH 187 (310)
Q Consensus 126 ~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~ 187 (310)
...+||+-|.-|..- .+..+.+..|+++.|+|+|||++-.... ...||+|.++-+
T Consensus 108 e~~vLRtsl~p~ll~----~l~~N~~~~~~riFEiG~Vfr~d~~d~~---h~~Ef~~Le~~~ 162 (294)
T 2rhq_A 108 DEILMRTHTSPVQAR----TMEKRNGQGPVKIICPGKVYRRDSDDAT---HSHQFTQIEGLV 162 (294)
T ss_dssp SSEEECSSSHHHHHH----HHHHTTTCSCEEEEEEEEEECCCCCBTT---BCSEEEEEEEEE
T ss_pred CcceeeccCHHHHHH----HHHhcCCCCCccEEEEcCEEecCCCCCC---CCChhhEEEEEE
Confidence 357899999998853 3333324689999999999998742221 236999966544
No 48
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.02 E-value=0.027 Score=57.98 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=73.0
Q ss_pred ceecCCCchhhHHHHHhhhhhhccCCCCceeeeccccccccc--CCCCccccccccccccceeeeCCCCCCccchhhhhh
Q 041441 127 AAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEI--SPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKN 204 (310)
Q Consensus 127 ~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEi--Spr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d 204 (310)
...|||-|.-|++..-...+. |+..|+++.++|+|||++- .+.| ..||.|.++=+-=. ..
T Consensus 199 ~sVLRTsLlPGLL~~vr~N~~--R~~~pvRLFEIGrVFR~D~~lDath----~~Ef~qLeGlv~G~--~v---------- 260 (648)
T 2odr_B 199 KLTLRSHMTSGWFLTVSDLMN--KKPLPFKLFSIDRCFRREQKEDKSH----LMTYHSASCAIAGE--GV---------- 260 (648)
T ss_dssp SEEECCCTHHHHHHHHHHHTT--TSCSCEEEEEEEEEECCCSCCCSSC----CSEEEEEEEEEECT--TC----------
T ss_pred cCcccccchhhHHHHHHHHHh--cCCCCeEEEEEeeEEecCccccccC----CCcceEEEEEEECC--CC----------
Confidence 578999999999986665543 5579999999999999763 2222 37888887655422 11
Q ss_pred hhhhcchhhhhhccccceEEEecccccccccChHHHHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEE
Q 041441 205 LEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIE 284 (310)
Q Consensus 205 ~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~ 284 (310)
.+.-..+.+..+|..+|+. .+||+... .+.++|-|-+- +++.
T Consensus 261 ----------------------------------dF~DLKGvLE~LL~~LGi~--~vrfrpse-~~~p~yhPGre-AEI~ 302 (648)
T 2odr_B 261 ----------------------------------DINDGKAIAEGLLSQFGFT--NFKFIPDE-KKSKYYTPETQ-TEVY 302 (648)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHTTTCC--CEEEEECT-TCCTTBCTTCC-EEEE
T ss_pred ----------------------------------CHHHHHHHHHHHHHHcCCC--eEEEEECC-CCCcCcCCceE-EEEE
Confidence 0222345677788888974 57887531 12345666532 5543
Q ss_pred c--CC--CeEEEeeh
Q 041441 285 C--SY--GWIECVGI 295 (310)
Q Consensus 285 ~--~~--Gw~E~~gi 295 (310)
. +- ||.|+.++
T Consensus 303 v~~~g~~GW~EIG~~ 317 (648)
T 2odr_B 303 AYHPKLKEWLEVATF 317 (648)
T ss_dssp EEETTTTEEEEEEEE
T ss_pred EecCCCCCCEEEEEE
Confidence 3 22 69988765
No 49
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=95.99 E-value=0.029 Score=57.97 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=72.9
Q ss_pred ceecCCCchhhHHHHHhhhhhhccCCCCceeeeccccccccc--CCCCccccccccccccceeeeCCCCCCccchhhhhh
Q 041441 127 AAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEI--SPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKN 204 (310)
Q Consensus 127 ~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEi--Spr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d 204 (310)
...|||-|.-|++..-...+. |+..|+++.++|+|||++- .+.+ ..||.|.++=+-=. ..
T Consensus 199 ~sVLRTSLlPGLL~~lr~N~~--R~~~pvRLFEIGrVFR~D~~lDath----~~Ef~qLeGlv~G~--~v---------- 260 (665)
T 2odr_A 199 KLTLRSHMTSGWFLTVSDLMN--KKPLPFKLFSIDRCFRREQKEDKSH----LMTYHSASCAIAGE--GV---------- 260 (665)
T ss_dssp SEEECCCTHHHHHHHHHHHTT--TSCSCEEEEEEEEEECCCSCCCSSC----CSEEEEEEEEEECT--TC----------
T ss_pred cCcccccchhhHHHHHHHHHh--cCCCCeEEEEEeeEEecCccccccC----CCcceEEEEEEECC--CC----------
Confidence 578999999999986665543 5579999999999999763 2222 37888887655422 11
Q ss_pred hhhhcchhhhhhccccceEEEecccccccccChHHHHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEE
Q 041441 205 LEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIE 284 (310)
Q Consensus 205 ~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~ 284 (310)
.+.-..+.+..+|..+|+. .+||+... .+.++|-|-+- +++.
T Consensus 261 ----------------------------------dF~DLKGvLE~LL~~LGi~--~vrfrpse-~~~p~yhPGre-AEI~ 302 (665)
T 2odr_A 261 ----------------------------------DINDGKAIAEGLLSQFGFT--NFKFIPDE-KKSKYYTPETQ-TEVY 302 (665)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHTTTCC--CEEEEECT-TCCTTBCTTCC-EEEE
T ss_pred ----------------------------------CHHHHHHHHHHHHHHcCCC--eEEEEECC-CCCCCcCCceE-EEEE
Confidence 0222345677788888974 57887531 12345666532 5543
Q ss_pred c--CC--CeEEEeeh
Q 041441 285 C--SY--GWIECVGI 295 (310)
Q Consensus 285 ~--~~--Gw~E~~gi 295 (310)
. +- ||.|+.++
T Consensus 303 V~~~g~~GW~EIG~~ 317 (665)
T 2odr_A 303 AYHPKLKEWLEVATF 317 (665)
T ss_dssp EEETTTTEEEEEEEE
T ss_pred EecCCCCCCEEEEEE
Confidence 3 22 69988765
No 50
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=95.98 E-value=0.028 Score=58.18 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=72.9
Q ss_pred ceecCCCchhhHHHHHhhhhhhccCCCCceeeeccccccccc--CCCCccccccccccccceeeeCCCCCCccchhhhhh
Q 041441 127 AAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEI--SPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKN 204 (310)
Q Consensus 127 ~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEi--Spr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d 204 (310)
...|||-|..|++..-...+. |+..|+++.++|+|||++- .+.| .+||.|.++=+-=. ..
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~--R~~~pvRLFEIGrVFR~D~~lDath----~~Ef~qLeGlv~G~--~v---------- 260 (685)
T 2odr_D 199 KLTLRSHMTSGWFLTVSDLMN--KKPLPFKLFSIDRCFRREQKEDKSH----LMTYHSASCAIAGE--GV---------- 260 (685)
T ss_dssp SEEECCCTHHHHHHHHHHHTT--TSCSCEEEEEEEEEECCCSCCCSSC----CSEEEEEEEEEECT--TC----------
T ss_pred cCcccccchhhHHHHHHHHHh--CCCCCeEEEEeccEEecCccccccC----CCcceEEEEEEECC--CC----------
Confidence 578999999999986665543 5579999999999999763 2222 27888887655422 11
Q ss_pred hhhhcchhhhhhccccceEEEecccccccccChHHHHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEE
Q 041441 205 LEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIE 284 (310)
Q Consensus 205 ~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~ 284 (310)
.+.-..+.+..+|..+|+. .+||+... .+.++|-|-+- +++.
T Consensus 261 ----------------------------------DF~DLKGvLE~LL~~LGi~--~vrfrpse-~~~p~yHPGre-AEI~ 302 (685)
T 2odr_D 261 ----------------------------------DINDGKAIAEGLLSQFGFT--NFKFIPDE-KKSKYYTPETQ-TEVY 302 (685)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHTTTCC--CEEEEECT-TCCTTBCTTCC-EEEE
T ss_pred ----------------------------------CHHHHHHHHHHHHHHcCCC--eEEEEECC-CCCCCcCCceE-EEEE
Confidence 0122345677788888974 57887531 12345666532 5543
Q ss_pred c--CC--CeEEEeeh
Q 041441 285 C--SY--GWIECVGI 295 (310)
Q Consensus 285 ~--~~--Gw~E~~gi 295 (310)
. +- ||.|+.++
T Consensus 303 V~~~g~~GW~EIG~~ 317 (685)
T 2odr_D 303 AYHPKLKEWLEVATF 317 (685)
T ss_dssp EEETTTTEEEEEEEE
T ss_pred EecCCCCCCEEEEEE
Confidence 2 22 69988765
No 51
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=95.55 E-value=0.073 Score=55.22 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=72.7
Q ss_pred ceecCCCchhhHHHHHhhhhhhccCCCCceeeeccccccccc--CCCCccccccccccccceeeeCCCCCCccchhhhhh
Q 041441 127 AAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEI--SPRQGFSRVREFTLAEIEHFVDPKDKSHPKFSEVKN 204 (310)
Q Consensus 127 ~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEi--Spr~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~v~d 204 (310)
...|||-|.-|++..-...+. |+..|+++.++|+|||++- .+. ..+||.|.++=+-=. ..
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~--R~~~pvRLFEIGrVFR~D~~lDat----h~~EfhqLeGlv~G~--~v---------- 260 (701)
T 2odr_C 199 KLTLRSHMTSGWFLTVSDLMN--KKPLPFKLFSIDRCFRREQKEDKS----HLMTYHSASCAIAGE--GV---------- 260 (701)
T ss_dssp EEEECCCTHHHHHHHHHHHTT--TSCSCEEEEEEEEEECCCSCCCSS----CCSEEEEEEEEEECT--TC----------
T ss_pred cCcccccchhhHHHHHHHHHh--CCCCCeEEEEEeeEEccCcccccc----CCCcceEEEEEEECC--CC----------
Confidence 478999999999986665543 5579999999999999763 222 237888887655422 11
Q ss_pred hhhhcchhhhhhccccceEEEecccccccccChHHHHHHHHHHHHHHHHcCCCCCCCceeeccCCccccccCceeeEEEE
Q 041441 205 LEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNNETIGYFIGRVYLFLSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIE 284 (310)
Q Consensus 205 ~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~e~~~y~~~~~~~~l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~ 284 (310)
.+.-..+.+..+|..+|+. .+||+... .+.++|-|-+- +++.
T Consensus 261 ----------------------------------DF~DLKGvLE~LL~~LGi~--~vrfrpse-~~~p~yHPGre-AEI~ 302 (701)
T 2odr_C 261 ----------------------------------DINDGKAIAEGLLSQFGFT--NFKFIPDE-KKSKYYTPETQ-TEVY 302 (701)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHTTTCC--CEEEEECT-TCCTTBCTTCC-EEEE
T ss_pred ----------------------------------CHHHHHHHHHHHHHHcCCC--eEEEEECC-CCCCCcCCceE-EEEE
Confidence 0222345677788888974 57887531 12334666532 4543
Q ss_pred c--CC--CeEEEeeh
Q 041441 285 C--SY--GWIECVGI 295 (310)
Q Consensus 285 ~--~~--Gw~E~~gi 295 (310)
. +- ||.|+.++
T Consensus 303 V~~~g~~GW~EIG~~ 317 (701)
T 2odr_C 303 AYHPKLKEWLEVATF 317 (701)
T ss_dssp EEETTTTEEEEEEEE
T ss_pred EecCCCCCCEEEEEE
Confidence 2 22 69988765
No 52
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=95.38 E-value=0.0082 Score=59.94 Aligned_cols=53 Identities=30% Similarity=0.311 Sum_probs=37.4
Q ss_pred CCceecC--CCchhhHHHHHhhhhhhccCCCCceeeecccccccccCCCCcccccc-cccccccee-eeC
Q 041441 125 LTAAYVR--PETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVR-EFTLAEIEH-FVD 190 (310)
Q Consensus 125 ~~~~yLR--PETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvR-EFtQ~E~e~-F~~ 190 (310)
+...||| ||. |. +.++- --+-++.|||+|||||-+. . -|=+ ||||.|+|+ |..
T Consensus 223 ~~~~~L~~Spql----~~--k~l~~----~g~~rvy~ig~~FR~E~~~-~--~Rh~pEFt~le~e~af~~ 279 (487)
T 1eov_A 223 KGKAYLAQSPQF----NK--QQLIV----ADFERVYEIGPVFRAENSN-T--HRHMTEFTGLDMEMAFEE 279 (487)
T ss_dssp TEEEEECSCTHH----HH--HHHHH----TTCCEEEEEEEEECCCCCC-C--TTCCSEEEEEEEEEECSS
T ss_pred CccEEcccChHH----HH--HHHHh----cCCCceEEEeccEecCCCC-C--Cccchhhhhhhhhhhhhc
Confidence 4579999 876 21 22221 1256999999999999752 1 2556 999999998 764
No 53
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=95.15 E-value=0.014 Score=58.51 Aligned_cols=55 Identities=27% Similarity=0.253 Sum_probs=39.5
Q ss_pred CCceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccCCCCccccccccccccceeeeC
Q 041441 125 LTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVD 190 (310)
Q Consensus 125 ~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~F~~ 190 (310)
+...||| ||.-.|. ++++-. =.-++.|||+|||||-+. --|..||||.|+|.-..
T Consensus 221 ~~~~yLr--~SpqLyl--k~l~v~----G~~rVyeig~~FR~E~~~---~rH~pEFT~lE~e~af~ 275 (493)
T 3a74_A 221 DMTLYMR--IAIELHL--KRLIVG----GLEKVYEIGRVFRNEGIS---TRHNPEFTMLELYEAYA 275 (493)
T ss_dssp TEEEEEC--SCSHHHH--HHHHHT----TCCEEEEEEEEECCCCCB---TTBCSEEEEEEEEEETC
T ss_pred CceeEEe--cCHHHHH--HHHhhc----ccCceEEECccccCCCCC---cccCCceeEEEEEecCC
Confidence 4579999 4444443 443321 245899999999999663 37899999999998664
No 54
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=94.87 E-value=0.0092 Score=58.71 Aligned_cols=52 Identities=21% Similarity=0.020 Sum_probs=36.1
Q ss_pred CCceecC--CCchhhHHHHHhhhhhhccCCCCceeeecccccccccCCCCcccccc-ccccccceeeeC
Q 041441 125 LTAAYVR--PETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVR-EFTLAEIEHFVD 190 (310)
Q Consensus 125 ~~~~yLR--PETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvR-EFtQ~E~e~F~~ 190 (310)
+...||| ||.. +..+- . -|.++.|||+|||||-+- .+ |=+ ||||.|+|....
T Consensus 180 ~~~~~Lr~Spel~-------~~~~~--~--g~~rvf~ig~~FR~E~~~-~~--RH~pEFtqle~e~~~~ 234 (434)
T 1x54_A 180 DKYAYLSQSAQLY-------LEAAI--F--GLEKVWSLTPSFRAEKSR-TR--RHLTEFWHLELEAAWM 234 (434)
T ss_dssp TEEEEECSCSHHH-------HHHHH--H--HHSEEEEEEEEECCCCCC-CS--SCCSEEEEEEEEEETC
T ss_pred CCcEEeccChHHH-------HHHHh--c--CccceEEEecceecCCCC-Cc--ccccEEEEeeEEEcCC
Confidence 4578999 6543 22121 1 277999999999999541 11 456 999999998764
No 55
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=94.56 E-value=0.012 Score=57.85 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=36.2
Q ss_pred CCceecC--CCchhhHHHHHhhhhhhccCCCCceeeecccccccccCCCCcccccc-ccccccceeeeC
Q 041441 125 LTAAYVR--PETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVR-EFTLAEIEHFVD 190 (310)
Q Consensus 125 ~~~~yLR--PETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvR-EFtQ~E~e~F~~ 190 (310)
+...||| ||.. +..+-. . |-++.|||+|||||-+- .+ |=+ ||||.|+|....
T Consensus 179 ~~~~~L~~Spql~-------~~~~~~-g---~~rvf~ig~~FR~E~~~-~~--RH~pEFtqle~e~~~~ 233 (429)
T 1wyd_A 179 GKEAFLAQSPQLY-------KELMAG-V---VERVFEVAPAWRAEESD-TP--FHLAEFISMDVEMAFA 233 (429)
T ss_dssp TEEEEECSCCHHH-------HHHHHH-H---HSEEEEEEEEECCCCCC-SS--SCCSEEEEEEEEEETC
T ss_pred CceEEecCCcHHH-------HHHHHh-C---cCceEEEcccccccCCc-cc--cccceeeEeeeeecCC
Confidence 4578999 7653 111222 1 67999999999999541 11 556 999999998765
No 56
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=94.50 E-value=0.025 Score=56.70 Aligned_cols=55 Identities=29% Similarity=0.361 Sum_probs=38.0
Q ss_pred CCceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccCCCCccccccccccccceeeeC
Q 041441 125 LTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFVD 190 (310)
Q Consensus 125 ~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~F~~ 190 (310)
+...||| +|--.|. ++++-. . .=++.|||+|||||-+. --|..||||.|+|.-..
T Consensus 230 ~~~~yL~--~SpqLyl--k~L~v~-G---~~rVyeIg~~FR~E~~~---~rH~pEFt~lE~e~af~ 284 (504)
T 1e1o_A 230 DLDMYLR--IAPELYL--KRLVVG-G---FERVFEINRNFRNEGIS---VRHNPEFTMMELYMAYA 284 (504)
T ss_dssp TEEEEEC--SCSHHHH--HHHHHH-T---CCEEEEEEEEECCCCCC---C-CCSEEEEEEEEEESC
T ss_pred CceEEec--cCHHHHH--HHHhhc-C---CCcEEEEcccccCCCCC---ccccCceeeeeeeecCC
Confidence 4579999 3433442 443322 1 24799999999999663 27889999999998664
No 57
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=94.20 E-value=0.01 Score=58.22 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=24.6
Q ss_pred CCceecC--CCchhhHHHHHhhhhhhccCCCCceeeecccccccccCCCCcccccc-ccccccceeeeCCC
Q 041441 125 LTAAYVR--PETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVR-EFTLAEIEHFVDPK 192 (310)
Q Consensus 125 ~~~~yLR--PETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvR-EFtQ~E~e~F~~P~ 192 (310)
+...||| ||.. ++.+- .+ +-++.|||+|||||-+- .+ |=+ ||||.|+|.....+
T Consensus 170 g~~~~L~~Spel~-------~~~l~--~g--~~rvf~ig~~FR~E~~~-~~--RH~pEFtqle~e~~~~~d 226 (422)
T 1n9w_A 170 EKRAYLAQSPQLY-------KQIMV--GV--FERVYEVAPVWRMEEHH-TS--RHLNEYLSLDVEMGFIAD 226 (422)
T ss_dssp ---------CHHH-------HHHHH--HH--HSEEEEEEEC----------------CCEEEEEEEESCSS
T ss_pred CCcEEeeeCHHHH-------HHHHh--hC--CCceeEEeCceECCCCC-CC--cccceeEEeeeeeeCCCC
Confidence 3468999 7643 23222 11 35999999999999541 11 556 99999999887533
No 58
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=94.20 E-value=0.17 Score=48.15 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=34.9
Q ss_pred ceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccCCCCccccccccccccc
Q 041441 127 AAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEI 185 (310)
Q Consensus 127 ~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~ 185 (310)
...||+-|..+..-. +.. + +.|+++.++|+|||++....| +-+|.|.|.
T Consensus 163 ~~vLRThtsp~~lr~----l~~-~-~~pirifeiGrVyR~d~d~th----~p~fhqleg 211 (327)
T 3pco_A 163 TRLLRTQTSGVQIRT----MKA-Q-QPPIRIIAPGRVYRNDYDQTH----TPMFHQMEG 211 (327)
T ss_dssp SCEECSCTHHHHHHH----HTT-C-CSSCCBCCEECCBCSCCBTTB----CSBCCEEEE
T ss_pred CceecccCCHHHHHH----HHh-C-CCCeeEEeeccEEecCCCccc----CCcccEEEE
Confidence 457999999887532 222 3 689999999999999843233 345888763
No 59
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=93.11 E-value=0.028 Score=53.73 Aligned_cols=31 Identities=32% Similarity=0.290 Sum_probs=26.5
Q ss_pred eeeecccccccccCCCCccccccccccccceeee
Q 041441 156 AAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFV 189 (310)
Q Consensus 156 ~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~F~ 189 (310)
++.|||+|||||-| +--|..||||.|+|.=.
T Consensus 111 rvyqIg~~FR~E~~---~~rH~pEFt~lE~e~af 141 (345)
T 3a5y_A 111 PVFQLCRSFRNEEM---GRYHNPEFTMLEWYRPH 141 (345)
T ss_dssp SEEEEEEEECCCCC---BTTBCSEEEEEEEEEET
T ss_pred cEEEEEcceeCCCC---cccccchhheeeeeeeC
Confidence 89999999999977 45578899999988644
No 60
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=90.08 E-value=0.15 Score=39.59 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=34.2
Q ss_pred CCceeeccCCceeccchhhHHHHhhhhhhhhhhhHHHHHHHHHHhhhccCCCHHHHHHHHHHhCCCCCCCCC
Q 041441 33 DQMVKDEKTGTFYRADQLLKDFCNEKLREDVRLSLEQAAELRRTLAMMDDLSVEELGAKIKEYGITAPDTKN 104 (310)
Q Consensus 33 D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~cP~~g~ 104 (310)
--|.+|..||+..-=..|||.-+... . .+++ -.+.+...+.+.++-.+||.||-
T Consensus 6 ~~~~~~PlCG~~L~W~eLIeQML~~e--n--------~~ei--------~kDr~~Fl~~~e~F~FkCP~CgE 59 (95)
T 2k5c_A 6 HHMAKCPICGSPLKWEELIEEMLIIE--N--------FEEI--------VKDRERFLAQVEEFVFKCPVCGE 59 (95)
T ss_dssp --CEECSSSCCEECHHHHHHHSTTCS--T--------HHHH--------TTCHHHHHHHHHHSEEECTTTCC
T ss_pred cccccCCcCCCccCHHHHHHHHHhhc--c--------HHHH--------HhhHHHHHHHHHHHhhcCCCccH
Confidence 35889999999887777777544210 0 0000 12445566667888899999985
No 61
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=88.99 E-value=0.14 Score=52.30 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=24.4
Q ss_pred eeeecccccccccCCCCccccccccccccceeee
Q 041441 156 AAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFV 189 (310)
Q Consensus 156 ~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~F~ 189 (310)
++.|||+|||||-+.. -|-=||||.|+|.=.
T Consensus 214 rvfqI~~~FR~E~~~~---~r~pEFT~lE~e~af 244 (580)
T 1l0w_A 214 RYFQIARCFRDEDLRA---DRQPDFTQLDLEMSF 244 (580)
T ss_dssp EEEEEEEEECCCCCCS---SCCSEEEEEEEEEES
T ss_pred CeEEEeceeeCCCCCC---CcCCCccceeeeecC
Confidence 7999999999997652 133399999998644
No 62
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=88.66 E-value=0.14 Score=52.16 Aligned_cols=31 Identities=32% Similarity=0.328 Sum_probs=24.5
Q ss_pred eeeecccccccccCCCCccccccccccccceeee
Q 041441 156 AAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFV 189 (310)
Q Consensus 156 ~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~F~ 189 (310)
++.|||+|||||-+.. -|-=||||.|+|.=.
T Consensus 208 rvfqI~~~FR~E~~~t---~r~pEFT~lE~e~af 238 (585)
T 1c0a_A 208 RYYQIVKCFRDEDLRA---DRQPEFTQIDVETSF 238 (585)
T ss_dssp EEEEEEEEECCCCCBT---TBCSEEEEEEEEEES
T ss_pred ceEEEeceeecCCCCC---CcCcccceeeeeecC
Confidence 7999999999997642 233399999998744
No 63
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=88.65 E-value=0.15 Score=51.29 Aligned_cols=54 Identities=30% Similarity=0.340 Sum_probs=36.5
Q ss_pred CCceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccCCCCccccccccccccceeee
Q 041441 125 LTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHFV 189 (310)
Q Consensus 125 ~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~F~ 189 (310)
+...||| +|.-.| -|+++-.. + =++.|||+|||||-|.. -+.-||||.|+|.=.
T Consensus 223 ~~~~yL~--~SpqL~--lk~liv~g---~-~rVyeig~~FR~E~~~t---rH~pEFtmlE~e~af 276 (521)
T 3bju_A 223 DMNLYMR--IAPELY--HKMLVVGG---I-DRVYEIGRQFRNEGIDL---THNPEFTTCEFYMAY 276 (521)
T ss_dssp TEEEEEC--SCSHHH--HHHHHHTT---C-CEEEEEEEEECCSCCBT---TBCSEEEEEEEEEET
T ss_pred CcceEee--CCHHHH--HHHHHhcC---c-CceEEEEcceeCCCCCC---ccchhhhhhhhhhhc
Confidence 3478999 333333 23343321 2 27999999999997653 578899999998744
No 64
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=87.86 E-value=0.18 Score=51.78 Aligned_cols=32 Identities=41% Similarity=0.545 Sum_probs=26.0
Q ss_pred eeeecccccccccCCCCcccccccccccccee-eeC
Q 041441 156 AAAQIGQAFRNEISPRQGFSRVREFTLAEIEH-FVD 190 (310)
Q Consensus 156 ~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~-F~~ 190 (310)
++.|||+|||||-+.. -|.-||||.|+|. |++
T Consensus 218 rvfqi~~~FR~E~~~t---~r~pEFt~lE~e~af~d 250 (617)
T 4ah6_A 218 RYFQVARCYRDEGSRP---DRQPEFTQIDIEMSFVD 250 (617)
T ss_dssp EEEEEEEEECCCSSCS---SSCSEEEEEEEEEESCC
T ss_pred cEEEEEhheecccCCC---CcCcceecceeeecCCC
Confidence 8999999999996642 2468999999997 544
No 65
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=85.91 E-value=0.27 Score=49.66 Aligned_cols=52 Identities=27% Similarity=0.364 Sum_probs=35.0
Q ss_pred CceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccCCCCccccccccccccceee
Q 041441 126 TAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISPRQGFSRVREFTLAEIEHF 188 (310)
Q Consensus 126 ~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSpr~GL~RvREFtQ~E~e~F 188 (310)
...|||- |.-.|. |+++-.. + =++.|||+|||||-+. --+.-||||.|+|.=
T Consensus 252 ~~~yL~~--SpqLyl--k~L~v~G---~-~rVyeIg~~FR~E~~~---~rH~pEFtmlE~e~a 303 (529)
T 4ex5_A 252 MEMFLRI--APELYL--KRLIVGG---F-ERVFEINRNFRNEGVS---PRHNPEFTMMEFYAA 303 (529)
T ss_dssp EEEEECS--CSHHHH--HHHHHTT---C-SEEEEEEEEECCSCCB---TTBCSEEEEEEEEEE
T ss_pred cceeccc--CHHHHH--HHHHhcC---C-CcEEEeehheecCCCC---CCcccHhHhhhhhhh
Confidence 4689983 222331 3333221 2 3799999999999764 367889999999873
No 66
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=84.00 E-value=1.7 Score=42.41 Aligned_cols=131 Identities=18% Similarity=0.244 Sum_probs=71.4
Q ss_pred eecCCCchhhHHHHHhhhhhhccCCCCceeeeccccccccc-C----C-CCccccccccccccceeeeCCCCCCccchhh
Q 041441 128 AYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEI-S----P-RQGFSRVREFTLAEIEHFVDPKDKSHPKFSE 201 (310)
Q Consensus 128 ~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEi-S----p-r~GL~RvREFtQ~E~e~F~~P~q~~~~e~~~ 201 (310)
.-||.-|.-+..--. +. ..| ++.++|+|||++- . + .|++-.+|-|+... +|..|++. ..+
T Consensus 114 ~vLRThts~~~~~~l----~~---~~~-k~~~~G~VyR~D~~da~h~n~fhQ~egv~lfe~g~--~f~~~~~~--~~l-- 179 (415)
T 3cmq_A 114 HMLRAHTSAHQWDLL----HA---GLD-AFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHE--LFAGIKDG--ESL-- 179 (415)
T ss_dssp EEECSSGGGGHHHHH----HT---TCS-EEEEEEEEECCCCCBTTBCSEEEEEEEEEEEEHHH--HTTTSTTG--GGC--
T ss_pred eEEcCCCcHHHHHHH----HH---CCC-CEEEeeeEEeccchhhhhhHHhcCCCcEEEEeccc--eecccccc--ceE--
Confidence 568999988876432 22 246 9999999999883 2 2 35555566665543 34444332 100
Q ss_pred hhhhhhhcchhhhhhccccceEEEecccccccccCh----HHHHHHHHHHHHHHHHc-CCCCCCCceeeccCCccccccC
Q 041441 202 VKNLEFLMFPREEQMSAQSAKKIRLGEAVSRGIVNN----ETIGYFIGRVYLFLSRL-GIDQDHLRFRQHLANEMAHYAA 276 (310)
Q Consensus 202 v~d~~~~~~~~~~q~~~~~~~~~s~~~a~~~~~i~~----e~~~y~~~~~~~~l~~~-Gi~~~~lrfr~~~~~E~AhYg~ 276 (310)
.. ++. |. ...++.-.... ..+....+.+..++..+ |++. .+||+. .+-.++-|
T Consensus 180 ----a~-~~~------g~-------~~~~~~~~~~~~~vd~~f~dlKg~le~ll~~lfg~~~-~~~~~~---~~~p~~hP 237 (415)
T 3cmq_A 180 ----QL-FEQ------SS-------RSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDEL-EIRWVD---CYFPFTHP 237 (415)
T ss_dssp ----CS-BCC------CC-------CCSSCCTTBCHHHHHHHHHHHHHHHHHHHHHHHCTTC-CEEEEE---EEETTEEE
T ss_pred ----EE-EEe------cC-------cccccccccccccccccHHHHHHHHHHHHHHHcCCCc-eEEEec---CCCCCCCC
Confidence 00 000 00 00001101111 12344456777888886 9874 377764 23456666
Q ss_pred ceeeEEEEcCCCeEEEeeh
Q 041441 277 DCWDAEIECSYGWIECVGI 295 (310)
Q Consensus 277 k~~D~e~~~~~Gw~E~~gi 295 (310)
. .-+++...-+|.|+.|+
T Consensus 238 g-r~a~I~~~g~wlE~lG~ 255 (415)
T 3cmq_A 238 S-FEMEINFHGEWLEVLGC 255 (415)
T ss_dssp E-EEEEEEETTEEEEEEEE
T ss_pred c-eEEEEEECCeeEEEEEE
Confidence 5 45555555569999986
No 67
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=81.70 E-value=0.46 Score=46.54 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=24.1
Q ss_pred eeeecccccccccC-C-CCccccccccccccceeee
Q 041441 156 AAAQIGQAFRNEIS-P-RQGFSRVREFTLAEIEHFV 189 (310)
Q Consensus 156 ~iAqiGk~fRNEiS-p-r~GL~RvREFtQ~E~e~F~ 189 (310)
++.|||+|||||-| + || .-||||.|+|.-.
T Consensus 199 rvfeIg~~FR~E~~~t~RH----~~EFT~lE~e~af 230 (435)
T 2xgt_A 199 DVFCIAQSYRAEKSRTRRH----LAEYAHVEAECPF 230 (435)
T ss_dssp SEEEEEEEECCCSSCCTTC----CSEEEEEEEEEES
T ss_pred ceEEEecceecCCCCcccc----ccceeEEEEEEec
Confidence 79999999999964 2 44 2499999998754
No 68
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=80.00 E-value=0.66 Score=45.62 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=34.0
Q ss_pred CceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccCC--CCccccccccccccceeee
Q 041441 126 TAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEISP--RQGFSRVREFTLAEIEHFV 189 (310)
Q Consensus 126 ~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiSp--r~GL~RvREFtQ~E~e~F~ 189 (310)
...|||... | . |+..+-... + =++.|||+|||||-+. || .-||||.|+|.-.
T Consensus 183 ~~~yL~~Sp-q-l---~~q~l~~~g--~-~rvf~i~~~FR~E~~~t~RH----~pEFt~le~e~a~ 236 (438)
T 3nem_A 183 EDAFLAQSP-Q-L---YKQIMMASG--L-DRVYEIAPIFRAEEHNTTRH----LNEAWSIDSEMAF 236 (438)
T ss_dssp EEEEECSCS-H-H---HHHHGGGTT--C-CEEEEEEEEECCCSSCCTTC----CSEEEEEEEEEES
T ss_pred ccEEEecCh-H-H---HHHHHHhcC--C-CceEEEcceEECCCCCCccc----ccceeeeeeeecc
Confidence 568998322 1 2 344332111 2 3899999999999763 44 3699999999744
No 69
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=78.83 E-value=5.6 Score=40.30 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=33.8
Q ss_pred cCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccC
Q 041441 122 PSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEIS 169 (310)
Q Consensus 122 p~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiS 169 (310)
|.+..-..|||-+..|..-.-.+..+ | ..|+++.|+|++||..-.
T Consensus 442 Pis~e~svmRtsLlpgLL~~l~~N~~--~-~~~vrlFEiG~Vf~~d~~ 486 (589)
T 3l4g_B 442 PKTAEFQVARTTLLPGLLKTIAANRK--M-PLPLKLFEISDIVIKDSN 486 (589)
T ss_dssp CSSGGGSEECSCSHHHHHHHHHHTTT--S-CSCEEEEEEEEEEEECTT
T ss_pred CCchhHhHHHHHHHHHHHHHHHHHhc--C-CCceEEEEeeeEEecCCc
Confidence 44445689999999999865544322 3 479999999999997643
No 70
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=75.40 E-value=0.97 Score=44.63 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=33.7
Q ss_pred CceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccccC--CCCccccccccccccceeee
Q 041441 126 TAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEIS--PRQGFSRVREFTLAEIEHFV 189 (310)
Q Consensus 126 ~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEiS--pr~GL~RvREFtQ~E~e~F~ 189 (310)
..+|||--. -.|. +.++-.. =++.|||+|||||-| .|| .-||||.|+|.-.
T Consensus 202 ~~~~L~~Sp--qL~l--q~l~~g~-----~rVyeig~~FR~E~~~t~rH----~pEFtmlE~e~af 254 (456)
T 3m4p_A 202 EPAYLTQSS--QLYL--ESVIASL-----GKSFCMLSSYRAEQSRTVRH----LAEYLHLEAELPF 254 (456)
T ss_dssp EEEEECSCC--HHHH--HTTHHHH-----SSEEEEEEEECCCSCCCSSC----CSEEEEEEEEEES
T ss_pred CCcccccCH--HHHH--HHHHhcc-----CcEEEEEhheecCCCCCCcc----hHHHHHhHHHHhc
Confidence 468888533 2232 2333333 369999999999965 255 3599999999743
No 71
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=71.89 E-value=1.5 Score=44.51 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=25.4
Q ss_pred ceeeecccccccccC--CCCcccccccccccccee-ee
Q 041441 155 FAAAQIGQAFRNEIS--PRQGFSRVREFTLAEIEH-FV 189 (310)
Q Consensus 155 f~iAqiGk~fRNEiS--pr~GL~RvREFtQ~E~e~-F~ 189 (310)
=++.|||+|||||-| .|| .-||||.|+|. |+
T Consensus 311 ~rVfeI~~~FR~E~~~t~RH----l~EFtmlE~e~af~ 344 (548)
T 3i7f_A 311 RKVFEVGPVFRAENSNTRRH----LTEFEGLDIEMEIV 344 (548)
T ss_dssp CEEEEEEEECCCSCCCSSSC----CSCEEEEEEEEECS
T ss_pred CcEEEEeeeEecCCCCCCCc----chhhhchhhhhhhh
Confidence 389999999999976 244 46999999996 66
No 72
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=62.43 E-value=1.8 Score=29.96 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=9.7
Q ss_pred ceeeccCCceeccchh
Q 041441 35 MVKDEKTGTFYRADQL 50 (310)
Q Consensus 35 mv~c~~~~~~~RaD~l 50 (310)
++.|..||..|=.+.|
T Consensus 3 iY~C~rCg~~fs~~el 18 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQL 18 (48)
T ss_dssp --CCCCTTTTCCCCCS
T ss_pred EEEeeccCCCccHHHH
Confidence 4679999976644443
No 73
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=60.46 E-value=4.1 Score=32.71 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=11.8
Q ss_pred hCCCCCCCCCCCCCCccc
Q 041441 95 YGITAPDTKNPLSDPYPF 112 (310)
Q Consensus 95 ~~i~cP~~g~~l~~~~~F 112 (310)
...+||.|++.+-++=.|
T Consensus 83 kPsrCP~CkSe~Ie~P~F 100 (105)
T 2gmg_A 83 IPSRCPKCKSEWIEEPRF 100 (105)
T ss_dssp CCSSCSSSCCCCBCCCCE
T ss_pred CCCCCcCCCCCccCCcce
Confidence 346999999875443333
No 74
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=59.50 E-value=6.7 Score=34.22 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=33.6
Q ss_pred ccCCCCceecCCCchhhHHHHHhhhhhhccCCCC-ceeeeccccccccc
Q 041441 121 GPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLP-FAAAQIGQAFRNEI 168 (310)
Q Consensus 121 Gp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLP-f~iAqiGk~fRNEi 168 (310)
=|.+..-.+|||-+..|+.-.-.+.+ .| +.| +++.|+|+||+.+-
T Consensus 52 NPls~e~~vmRtsLlpgLL~~~~~N~--~r-~~~~~~lFEiG~Vf~~~~ 97 (213)
T 3ica_A 52 NPLSQELNCMRQTLLFGGLETLSHNL--RR-KHLSLYLFEWGKCYRFHA 97 (213)
T ss_dssp SBSCSSEEEECSSSHHHHHHHHHHHH--TT-TCSEEEEEEEEEEEEEEC
T ss_pred CCccHHHHHHHHHhHHHHHHHHHHHH--cC-CCCCeeEEEeeeEEecCC
Confidence 35566689999999999985443322 34 455 99999999999764
No 75
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=55.92 E-value=5.3 Score=33.39 Aligned_cols=17 Identities=12% Similarity=-0.033 Sum_probs=12.2
Q ss_pred CCCCCceeeccCCceec
Q 041441 30 KLTDQMVKDEKTGTFYR 46 (310)
Q Consensus 30 ~F~D~mv~c~~~~~~~R 46 (310)
+-.-+.+.|..||+.|.
T Consensus 127 ~~~~~~y~C~~Cg~~~~ 143 (165)
T 2lcq_A 127 KVIKWRYVCIGCGRKFS 143 (165)
T ss_dssp SCCCCCEEESSSCCEES
T ss_pred ccccEEEECCCCCCccc
Confidence 33445688999998874
No 76
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=55.04 E-value=1.5 Score=36.50 Aligned_cols=18 Identities=6% Similarity=0.135 Sum_probs=14.1
Q ss_pred CCCceeeccCCceeccch
Q 041441 32 TDQMVKDEKTGTFYRADQ 49 (310)
Q Consensus 32 ~D~mv~c~~~~~~~RaD~ 49 (310)
....+.|..||..|..+.
T Consensus 67 ~p~~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKE 84 (139)
T ss_dssp ECCEEEETTTCCEEEGGG
T ss_pred cCCcEECCCCCCEEeccc
Confidence 456788999999887655
No 77
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=54.90 E-value=12 Score=32.10 Aligned_cols=26 Identities=8% Similarity=-0.041 Sum_probs=14.6
Q ss_pred HHHHHHhhhccC-CCHHHHHHHHHHhC
Q 041441 71 AELRRTLAMMDD-LSVEELGAKIKEYG 96 (310)
Q Consensus 71 ~~~~~~~~~~~~-~~~~~~~~~i~~~~ 96 (310)
+.+......+.. ++.++|.+++..++
T Consensus 29 ~~lw~~rD~L~~~ls~~eLk~lL~~N~ 55 (160)
T 2riq_A 29 DLIWNIKDELKKVCSTNDLKELLIFNK 55 (160)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHcC
Confidence 344444444443 67777777766654
No 78
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=54.36 E-value=7.3 Score=31.07 Aligned_cols=16 Identities=0% Similarity=0.131 Sum_probs=12.0
Q ss_pred CCCceeeccCCceecc
Q 041441 32 TDQMVKDEKTGTFYRA 47 (310)
Q Consensus 32 ~D~mv~c~~~~~~~Ra 47 (310)
....+.|..||..|-.
T Consensus 70 ~p~~~~C~~CG~~~e~ 85 (119)
T 2kdx_A 70 EKVELECKDCSHVFKP 85 (119)
T ss_dssp ECCEEECSSSSCEECS
T ss_pred ccceEEcCCCCCEEeC
Confidence 3567889999987643
No 79
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=54.18 E-value=13 Score=22.95 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=16.1
Q ss_pred cCCCCCCCCCceeeccCCceeccchhhH
Q 041441 25 SGHVEKLTDQMVKDEKTGTFYRADQLLK 52 (310)
Q Consensus 25 SGHv~~F~D~mv~c~~~~~~~RaD~l~e 52 (310)
+.|.+ +.-+.|..|++.|.--..+.
T Consensus 3 ~~h~~---~k~~~C~~C~k~f~~~~~l~ 27 (45)
T 2epq_A 3 SGSSG---EKPYSCPVCGLRFKRKDRMS 27 (45)
T ss_dssp CCCSS---CCSSEETTTTEECSCHHHHH
T ss_pred CCcCC---CCCCcCCCCCcccCCHHHHH
Confidence 45554 34578999999985443333
No 80
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=49.84 E-value=9.6 Score=33.18 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=31.4
Q ss_pred ccCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeeccccccccc
Q 041441 121 GPSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNEI 168 (310)
Q Consensus 121 Gp~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNEi 168 (310)
=|.+..-.+|||-+..|+.-.-.+.+ .|+.-++++.|+|+||+.+-
T Consensus 52 NPls~e~~vmRtsLlpgLL~~~~~N~--~r~~~~v~lFEiG~Vf~~~~ 97 (213)
T 3ig2_A 52 NPLSADLNCMRQTLLFGGLESIAHNA--NRKNADLKFFEFGNCYHFDA 97 (213)
T ss_dssp SGGGCSCCEECSCSHHHHHHHHHHC--------CCEEEEEEEEEEECC
T ss_pred CCcchhHHHHHHHhHHHHHHHHHHHh--cCCCCCeeEEEeeeEEecCc
Confidence 35566679999999999985433322 34334599999999999764
No 81
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=47.55 E-value=14 Score=38.81 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=34.6
Q ss_pred cCCCCceecCCCchhhHHHHHhhhhhhccCCCCceeeecccccccc
Q 041441 122 PSGLTAAYVRPETAPGIFVNFKDLYYNNGNKLPFAAAQIGQAFRNE 167 (310)
Q Consensus 122 p~~~~~~yLRPETAQgif~nFk~~l~s~r~kLPf~iAqiGk~fRNE 167 (310)
|.+.....|||-+..|.+-.-.+. ..|+..|+++.|+|+|||++
T Consensus 541 Pis~e~svLRtsLlpgLL~~l~~N--~~r~~~~vrlFEiG~Vf~~d 584 (795)
T 2rhq_B 541 PMSEAHATLRQSLLPHLIEATAYN--VARKNKDVRLYEIGRVFFGN 584 (795)
T ss_dssp CSCTTSSEECSCSHHHHHHHHHHH--HHTTCCCEEEEEEEEEEECC
T ss_pred CCchhhhhhhhccHHHHHHHHHHH--hcCCCCCeEEEEEeeEEecC
Confidence 555567899999999999655543 34557899999999999964
No 82
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=42.63 E-value=25 Score=25.92 Aligned_cols=24 Identities=8% Similarity=-0.029 Sum_probs=10.5
Q ss_pred hhhcCCCCC-CCCCceeeccCCcee
Q 041441 22 LKASGHVEK-LTDQMVKDEKTGTFY 45 (310)
Q Consensus 22 ~~aSGHv~~-F~D~mv~c~~~~~~~ 45 (310)
|.++|=+.. =.-..+.|..||..|
T Consensus 14 ~~~~~g~~~~~~~v~Y~C~~CG~~~ 38 (70)
T 1twf_L 14 AAAAGTSQARTATLKYICAECSSKL 38 (70)
T ss_dssp -----------CCCCEECSSSCCEE
T ss_pred ccccccccCCCceEEEECCCCCCcc
Confidence 444443322 234667899999765
No 83
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=42.16 E-value=11 Score=27.31 Aligned_cols=9 Identities=44% Similarity=0.479 Sum_probs=7.0
Q ss_pred CceeeccCC
Q 041441 34 QMVKDEKTG 42 (310)
Q Consensus 34 ~mv~c~~~~ 42 (310)
.|..|..|+
T Consensus 5 ~mr~C~~Cg 13 (60)
T 2apo_B 5 RMKKCPKCG 13 (60)
T ss_dssp CCEECTTTC
T ss_pred hceeCCCCC
Confidence 477888887
No 84
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=41.36 E-value=12 Score=29.16 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=12.9
Q ss_pred HHHHHHHHhCC---CCCCCCCCCC
Q 041441 87 ELGAKIKEYGI---TAPDTKNPLS 107 (310)
Q Consensus 87 ~~~~~i~~~~i---~cP~~g~~l~ 107 (310)
++...+..+.. .||.||.+++
T Consensus 35 ~l~~~l~~l~~~g~~CPvCgs~l~ 58 (112)
T 1l8d_A 35 DLKTAIEELKKAKGKCPVCGRELT 58 (112)
T ss_dssp HHHHHHHHHTTCSEECTTTCCEEC
T ss_pred HHHHHHHHhhcCCCCCCCCCCcCC
Confidence 33444444433 7999998654
No 85
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=40.27 E-value=21 Score=37.47 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=33.1
Q ss_pred cCCCCceecCCCchhhHHHHHhhhhhhccC-CCCceeeecccccc
Q 041441 122 PSGLTAAYVRPETAPGIFVNFKDLYYNNGN-KLPFAAAQIGQAFR 165 (310)
Q Consensus 122 p~~~~~~yLRPETAQgif~nFk~~l~s~r~-kLPf~iAqiGk~fR 165 (310)
|.+.....|||-+..|..-.-.+.+ .|+ ..|+++.|+|++||
T Consensus 536 Pis~d~svLRtsLlpgLL~~l~~N~--~r~~~~~vrlFEiG~Vf~ 578 (785)
T 1b7y_B 536 PLAPEKAALRTHLFPGLVRVLKENL--DLDRPERALLFEVGRVFR 578 (785)
T ss_dssp CSSTTSSEECSCSHHHHHHHHHHHH--HHSCCSCEEEEEEEEEES
T ss_pred CCchhhhhhhhhhHHHHHHHHHHHh--hcCCCCCeEEEEEeeeec
Confidence 5555678999999999996555433 344 58999999999999
No 86
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=39.39 E-value=10 Score=32.76 Aligned_cols=14 Identities=7% Similarity=-0.005 Sum_probs=10.7
Q ss_pred ceeeccCCceeccc
Q 041441 35 MVKDEKTGTFYRAD 48 (310)
Q Consensus 35 mv~c~~~~~~~RaD 48 (310)
...|..||-.|..|
T Consensus 155 ~~~C~~CG~~~~g~ 168 (191)
T 1lko_A 155 KWRCRNCGYVHEGT 168 (191)
T ss_dssp EEEETTTCCEEEEE
T ss_pred eEEECCCCCEeeCC
Confidence 67799999876543
No 87
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=38.10 E-value=6 Score=43.01 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=17.3
Q ss_pred CCCCCCCCCCCcccceeeeeeeccCCC
Q 041441 99 APDTKNPLSDPYPFNLMFQTSVGPSGL 125 (310)
Q Consensus 99 cP~~g~~l~~~~~FNLMF~t~iGp~~~ 125 (310)
||.||..+.. -.+||.|.+.+||...
T Consensus 530 cp~cg~~~~~-dg~~LlFERFLnpeR~ 555 (1041)
T 3f2b_A 530 CPRCGTKYKK-DGHDIPFETFLGFKGD 555 (1041)
T ss_dssp CTTTCCBCEE-ECCCCCTHHHHTTTSC
T ss_pred Cccccccccc-cCCCcChhhccCCCCC
Confidence 5555543221 1299999999999654
No 88
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=37.61 E-value=21 Score=26.00 Aligned_cols=11 Identities=9% Similarity=-0.034 Sum_probs=9.0
Q ss_pred hCCCCCCCCCC
Q 041441 95 YGITAPDTKNP 105 (310)
Q Consensus 95 ~~i~cP~~g~~ 105 (310)
..|+||.||..
T Consensus 37 ~~iRC~~CG~R 47 (63)
T 3h0g_L 37 EVIRCRECGHR 47 (63)
T ss_dssp SCCCCSSSCCC
T ss_pred CceECCCCCcE
Confidence 46899999974
No 89
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=37.40 E-value=42 Score=21.54 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=15.3
Q ss_pred CCCceeeccCCceeccchhhHHH
Q 041441 32 TDQMVKDEKTGTFYRADQLLKDF 54 (310)
Q Consensus 32 ~D~mv~c~~~~~~~RaD~l~e~~ 54 (310)
.+--+.|..|++.|.--..|..+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H 31 (54)
T 2eps_A 9 VGKPYICQSCGKGFSRPDHLNGH 31 (54)
T ss_dssp SSCCEECSSSCCEESSHHHHHHH
T ss_pred CCCCeECCCCCcccCCHHHHHHH
Confidence 34558899999998654444333
No 90
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=36.32 E-value=23 Score=26.63 Aligned_cols=17 Identities=0% Similarity=-0.127 Sum_probs=10.5
Q ss_pred CCCCc--eeeccCCceecc
Q 041441 31 LTDQM--VKDEKTGTFYRA 47 (310)
Q Consensus 31 F~D~m--v~c~~~~~~~Ra 47 (310)
|.+.+ +.|.+|++.+.+
T Consensus 31 y~~~~v~I~CnDC~~~s~v 49 (79)
T 2k2d_A 31 YQNMTVDILCNDCNGRSTV 49 (79)
T ss_dssp --CCEEEEEESSSCCEEEE
T ss_pred HhCCEeEEECCCCCCCccC
Confidence 55655 478999876644
No 91
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=31.66 E-value=20 Score=27.27 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=26.2
Q ss_pred HHhCCCCCCCCCCCCCCcccceeeeeeeccC-----CC--CceecCCCchhhHH
Q 041441 93 KEYGITAPDTKNPLSDPYPFNLMFQTSVGPS-----GL--TAAYVRPETAPGIF 139 (310)
Q Consensus 93 ~~~~i~cP~~g~~l~~~~~FNLMF~t~iGp~-----~~--~~~yLRPETAQgif 139 (310)
+.....||.||+ ++||....|-. +. .-|---|+|+-+.-
T Consensus 24 q~~~y~Cp~CG~--------~~v~r~atGiW~C~~Cg~~~aggay~~~t~~~~~ 69 (83)
T 1vq8_Z 24 MNEDHACPNCGE--------DRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKT 69 (83)
T ss_dssp HHSCEECSSSCC--------EEEEEEETTEEEETTTCCEEECCSSSSSCHHHHH
T ss_pred ccccCcCCCCCC--------cceeccCCCeEECCCCCCEecCCEecccchHHHH
Confidence 344558999998 68898887742 11 12334679988876
No 92
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.17 E-value=22 Score=24.30 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=16.0
Q ss_pred CCceeeccCCceeccchhhHHH
Q 041441 33 DQMVKDEKTGTFYRADQLLKDF 54 (310)
Q Consensus 33 D~mv~c~~~~~~~RaD~l~e~~ 54 (310)
+.-+.|..|++.|.--..|..+
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~~H 33 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILVQH 33 (72)
T ss_dssp CCCEECSSSCCEESSHHHHHHH
T ss_pred CCCccCCCCCCccCCHHHHHHH
Confidence 4568899999999765555444
No 93
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=30.55 E-value=16 Score=26.41 Aligned_cols=10 Identities=30% Similarity=0.355 Sum_probs=7.3
Q ss_pred CceeeccCCc
Q 041441 34 QMVKDEKTGT 43 (310)
Q Consensus 34 ~mv~c~~~~~ 43 (310)
.|..|..||.
T Consensus 4 ~mr~C~~Cg~ 13 (60)
T 2aus_D 4 RIRKCPKCGR 13 (60)
T ss_dssp CCEECTTTCC
T ss_pred cceECCCCCC
Confidence 3778888873
No 94
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=29.78 E-value=23 Score=24.46 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=13.5
Q ss_pred eeeccCCceeccchhhHHH
Q 041441 36 VKDEKTGTFYRADQLLKDF 54 (310)
Q Consensus 36 v~c~~~~~~~RaD~l~e~~ 54 (310)
+.|..||+.|+--.-|..+
T Consensus 5 y~C~~C~k~F~~~~~L~~H 23 (60)
T 4gzn_C 5 FFCNFCGKTYRDASGLSRH 23 (60)
T ss_dssp EECTTTCCEESSHHHHHHH
T ss_pred ccCCCCCCEeCCHHHHHHH
Confidence 6899999999755544433
No 95
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.06 E-value=38 Score=24.82 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=18.0
Q ss_pred cCCCCCCCCCceeeccCCceeccchhhHHH
Q 041441 25 SGHVEKLTDQMVKDEKTGTFYRADQLLKDF 54 (310)
Q Consensus 25 SGHv~~F~D~mv~c~~~~~~~RaD~l~e~~ 54 (310)
|||.+ +-.+.| .|++.|.--..+..+
T Consensus 3 ~~h~~---~k~~~C-~C~~~f~~~~~l~~H 28 (110)
T 2csh_A 3 SGSSG---DKLYPC-QCGKSFTHKSQRDRH 28 (110)
T ss_dssp CCCCC---CCCEEC-TTSCEESSHHHHHHH
T ss_pred CCCCC---CCCEec-cCCCccCCHHHHHHH
Confidence 56654 456889 899998765555544
No 96
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=28.93 E-value=21 Score=30.36 Aligned_cols=14 Identities=7% Similarity=-0.178 Sum_probs=10.8
Q ss_pred CCceeeccCCceec
Q 041441 33 DQMVKDEKTGTFYR 46 (310)
Q Consensus 33 D~mv~c~~~~~~~R 46 (310)
+....|..||-.|-
T Consensus 136 ~~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 136 KKVYICPICGYTAV 149 (170)
T ss_dssp SCEEECTTTCCEEE
T ss_pred CCeeEeCCCCCeeC
Confidence 46778999997663
No 97
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=28.17 E-value=14 Score=33.05 Aligned_cols=14 Identities=7% Similarity=0.031 Sum_probs=9.5
Q ss_pred eeeccCCceeccch
Q 041441 36 VKDEKTGTFYRADQ 49 (310)
Q Consensus 36 v~c~~~~~~~RaD~ 49 (310)
+.|..|+..|-.|.
T Consensus 122 ~~C~~C~~~~~~~~ 135 (246)
T 1yc5_A 122 YYCVRCEKKYTVED 135 (246)
T ss_dssp EEETTTCCEEEHHH
T ss_pred eEcCCCCCCCcHHH
Confidence 35999998764443
No 98
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.76 E-value=49 Score=24.52 Aligned_cols=14 Identities=14% Similarity=-0.047 Sum_probs=11.3
Q ss_pred CCceeeccCCceec
Q 041441 33 DQMVKDEKTGTFYR 46 (310)
Q Consensus 33 D~mv~c~~~~~~~R 46 (310)
+.-+.|..|++.||
T Consensus 32 ~~~~~C~~C~k~F~ 45 (96)
T 2ctd_A 32 KGSVSCPTCQAVGR 45 (96)
T ss_dssp TSCEECTTTCSCEE
T ss_pred CCCcCCCCCCCCcc
Confidence 34578999999994
No 99
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.20 E-value=66 Score=19.87 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=15.3
Q ss_pred CCceeeccCCceeccchhhHHH
Q 041441 33 DQMVKDEKTGTFYRADQLLKDF 54 (310)
Q Consensus 33 D~mv~c~~~~~~~RaD~l~e~~ 54 (310)
+.-+.|..|++.|+--..|..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H 31 (48)
T 2epr_A 10 RKQVACEICGKIFRDVYHLNRH 31 (48)
T ss_dssp CCSEEETTTTEEESSHHHHHHH
T ss_pred CcCeeCCCCCcccCCHHHHHHH
Confidence 3568899999998755544433
No 100
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=23.90 E-value=24 Score=32.20 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=10.6
Q ss_pred eeeccCCceeccchh
Q 041441 36 VKDEKTGTFYRADQL 50 (310)
Q Consensus 36 v~c~~~~~~~RaD~l 50 (310)
+.|..|++.|..+.+
T Consensus 137 ~~C~~C~~~~~~~~~ 151 (289)
T 1q1a_A 137 CHCIGCGKVYPPQVF 151 (289)
T ss_dssp EEETTTCCEECHHHH
T ss_pred eEECCCCCCCcHHHH
Confidence 459999987755443
No 101
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=23.89 E-value=58 Score=23.20 Aligned_cols=18 Identities=6% Similarity=-0.058 Sum_probs=12.8
Q ss_pred CCCCCCCCceeeccCCce
Q 041441 27 HVEKLTDQMVKDEKTGTF 44 (310)
Q Consensus 27 Hv~~F~D~mv~c~~~~~~ 44 (310)
|+.--.-.++.|..||+.
T Consensus 22 h~kl~~p~l~~c~~cG~~ 39 (60)
T 2zjr_Z 22 HHALTAPNLTECPQCHGK 39 (60)
T ss_dssp TCCCCCCCCEECTTTCCE
T ss_pred cccccCCCceECCCCCCE
Confidence 443346678999999964
No 102
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=23.81 E-value=33 Score=30.67 Aligned_cols=15 Identities=7% Similarity=0.018 Sum_probs=10.5
Q ss_pred eeeccCCceeccchh
Q 041441 36 VKDEKTGTFYRADQL 50 (310)
Q Consensus 36 v~c~~~~~~~RaD~l 50 (310)
+.|..|+..|-.|.+
T Consensus 124 ~~C~~C~~~~~~~~~ 138 (253)
T 1ma3_A 124 LDCLDCHETYDWSEF 138 (253)
T ss_dssp EEETTTCCEEEGGGT
T ss_pred eeeCCCCCcCcHHHH
Confidence 459999987755543
No 103
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=23.26 E-value=27 Score=22.26 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=13.4
Q ss_pred ceeeccCCceeccchhhHHH
Q 041441 35 MVKDEKTGTFYRADQLLKDF 54 (310)
Q Consensus 35 mv~c~~~~~~~RaD~l~e~~ 54 (310)
-+.|..|++.|.--.-+..+
T Consensus 4 ~~~C~~C~~~f~~~~~l~~H 23 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLNIH 23 (57)
T ss_dssp -CBCTTTCCBCSCHHHHHHH
T ss_pred CccCCCCcchhCChHHHHHH
Confidence 46799999988755544433
No 104
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=23.21 E-value=38 Score=31.22 Aligned_cols=14 Identities=0% Similarity=-0.045 Sum_probs=10.1
Q ss_pred eeeccCCceeccch
Q 041441 36 VKDEKTGTFYRADQ 49 (310)
Q Consensus 36 v~c~~~~~~~RaD~ 49 (310)
+.|..|++.|-.+.
T Consensus 140 ~~C~~C~~~~~~~~ 153 (285)
T 3glr_A 140 ATCTVCQRPFPGED 153 (285)
T ss_dssp EEETTTCCEEEGGG
T ss_pred EEECCCCCcCCHHH
Confidence 46999998775544
No 105
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.49 E-value=41 Score=24.59 Aligned_cols=22 Identities=14% Similarity=-0.109 Sum_probs=14.9
Q ss_pred CCceeeccCCceec-cchhhHHH
Q 041441 33 DQMVKDEKTGTFYR-ADQLLKDF 54 (310)
Q Consensus 33 D~mv~c~~~~~~~R-aD~l~e~~ 54 (310)
+--+.|..|++.|. --..|..+
T Consensus 22 ~~~~~C~~C~k~f~~~~~~L~~H 44 (98)
T 2gqj_A 22 RGEAVCPTCNVVTRKTLVGLKKH 44 (98)
T ss_dssp TSCCCCTTTCCCCSSCSHHHHHH
T ss_pred CCCcCCCCCCCChhhhHHHHHHH
Confidence 34578999999996 44444433
No 106
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=22.16 E-value=27 Score=23.35 Aligned_cols=9 Identities=11% Similarity=0.235 Sum_probs=7.4
Q ss_pred CCCCCCCCC
Q 041441 96 GITAPDTKN 104 (310)
Q Consensus 96 ~i~cP~~g~ 104 (310)
.++||+||+
T Consensus 5 ~~~CP~C~~ 13 (50)
T 1pft_A 5 QKVCPACES 13 (50)
T ss_dssp CCSCTTTSC
T ss_pred cEeCcCCCC
Confidence 458999988
No 107
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=22.08 E-value=37 Score=32.36 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=10.6
Q ss_pred eeeccCCceeccchh
Q 041441 36 VKDEKTGTFYRADQL 50 (310)
Q Consensus 36 v~c~~~~~~~RaD~l 50 (310)
+.|..|+..|-.+.+
T Consensus 145 ~~C~~C~~~~~~~~~ 159 (361)
T 1q14_A 145 CHCIGCGKVYPPQVF 159 (361)
T ss_dssp EEETTTCCEECTHHH
T ss_pred cCcCCCCccCcHHHH
Confidence 459999987765443
No 108
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=21.87 E-value=29 Score=22.44 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=13.0
Q ss_pred eeeccCCceeccchhhHHH
Q 041441 36 VKDEKTGTFYRADQLLKDF 54 (310)
Q Consensus 36 v~c~~~~~~~RaD~l~e~~ 54 (310)
+.|..|++.|..-.-+..+
T Consensus 3 ~~C~~C~~~f~~~~~l~~H 21 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRH 21 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHH
T ss_pred CcCCCCccccCCHHHHHHH
Confidence 5799999988655544433
No 109
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=21.55 E-value=1.2e+02 Score=21.74 Aligned_cols=22 Identities=9% Similarity=-0.046 Sum_probs=14.9
Q ss_pred CCceeeccCCceeccchhhHHH
Q 041441 33 DQMVKDEKTGTFYRADQLLKDF 54 (310)
Q Consensus 33 D~mv~c~~~~~~~RaD~l~e~~ 54 (310)
+..+.|..|++.|.--..+..+
T Consensus 15 ~~~~~C~~C~~~f~~~~~l~~H 36 (106)
T 2ee8_A 15 KKEFICKFCGRHFTKSYNLLIH 36 (106)
T ss_dssp CCCCBCSSSCCBCSSHHHHHHH
T ss_pred CcCeECCCCCCccCCHHHHHHH
Confidence 3457899999988755544444
No 110
>3vrc_A Cytochrome C'; C-type cytpchrome, electron transport; HET: HEC PG4; 1.00A {Thermochromatium tepidum} PDB: 1bbh_A*
Probab=21.39 E-value=8.4 Score=31.46 Aligned_cols=15 Identities=27% Similarity=0.151 Sum_probs=12.0
Q ss_pred CceeeccCCceeccc
Q 041441 34 QMVKDEKTGTFYRAD 48 (310)
Q Consensus 34 ~mv~c~~~~~~~RaD 48 (310)
.--.|+.|++.||+|
T Consensus 117 vg~tCkaCH~~yR~d 131 (131)
T 3vrc_A 117 VGAACKACHQKYRAD 131 (131)
T ss_dssp HHHHHHHHHHHHBCC
T ss_pred HHHHHHHHHHHHcCC
Confidence 334599999999987
No 111
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=21.16 E-value=20 Score=22.91 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=12.7
Q ss_pred eeeccCCceeccchhhHHH
Q 041441 36 VKDEKTGTFYRADQLLKDF 54 (310)
Q Consensus 36 v~c~~~~~~~RaD~l~e~~ 54 (310)
+.|..|++.|.--..+..+
T Consensus 2 ~~C~~C~~~f~~~~~l~~H 20 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKH 20 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHH
T ss_pred CcCCCCcCcCCCHHHHHHH
Confidence 4699999988655544433
No 112
>2hlj_A Hypothetical protein; putative thioesterase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Pseudomonas putida} SCOP: d.38.1.1
Probab=21.13 E-value=1.3e+02 Score=23.32 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=28.7
Q ss_pred eEEEecccccccccCh-HHHHHHHHHHHHHHHHcCCCCCC
Q 041441 222 KKIRLGEAVSRGIVNN-ETIGYFIGRVYLFLSRLGIDQDH 260 (310)
Q Consensus 222 ~~~s~~~a~~~~~i~~-e~~~y~~~~~~~~l~~~Gi~~~~ 260 (310)
..+..++....|.+.| ..+.|....+..++.++|++...
T Consensus 10 ~~V~~~d~D~~ghv~~~~y~~~~e~a~~~~~~~~g~~~~~ 49 (157)
T 2hlj_A 10 TTVQEDWVDYNGHLRDAFYLLIFSYATDALMDRIGLDADS 49 (157)
T ss_dssp EECCGGGBCTTSBBCHHHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred eecCHHHcCCCCcccHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 3444455567788888 67777777888899999998743
No 113
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=20.67 E-value=58 Score=27.55 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=25.0
Q ss_pred ccccccccCh-HHHHHHHHHHHHHHHHcCCCC
Q 041441 228 EAVSRGIVNN-ETIGYFIGRVYLFLSRLGIDQ 258 (310)
Q Consensus 228 ~a~~~~~i~~-e~~~y~~~~~~~~l~~~Gi~~ 258 (310)
++++.|..+. +.|.|.+..++-.|++|||+-
T Consensus 112 E~vK~K~~~~~~iY~y~lqElkPtl~ELGI~t 143 (152)
T 2y69_E 112 EVVKDKAGPHKEIYPYVIQELRPTLNELGIST 143 (152)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhcCCchhhHHHHHHHHhhHHHHhCCCC
Confidence 4455566555 679999999999999999994
No 114
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.35 E-value=41 Score=23.06 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=16.1
Q ss_pred CCceeeccCCceeccchhhHHH
Q 041441 33 DQMVKDEKTGTFYRADQLLKDF 54 (310)
Q Consensus 33 D~mv~c~~~~~~~RaD~l~e~~ 54 (310)
+--+.|..|++.|.--..|..+
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~~H 26 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLNWH 26 (78)
T ss_dssp CCCEECSSSCCEESSHHHHHHH
T ss_pred CcCeECCCCCCeeCCHHHHHHH
Confidence 4557899999999766655544
No 115
>1z54_A Probable thioesterase; hypothetical protein, structural genom NPPSFA, riken structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: d.38.1.1
Probab=20.28 E-value=79 Score=23.63 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=27.5
Q ss_pred eEEEecccccccccCh-HHHHHHHHHHHHHHHHcCCCC
Q 041441 222 KKIRLGEAVSRGIVNN-ETIGYFIGRVYLFLSRLGIDQ 258 (310)
Q Consensus 222 ~~~s~~~a~~~~~i~~-e~~~y~~~~~~~~l~~~Gi~~ 258 (310)
+.+..++....|.+.+ ..+.|....+..++.++|++.
T Consensus 7 ~~V~~~d~D~~g~v~~~~y~~~~~~a~~~~~~~~g~~~ 44 (132)
T 1z54_A 7 IKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPY 44 (132)
T ss_dssp EECCGGGBCTTSSBCTTHHHHHHHHHHHHHHHHTTCCH
T ss_pred EEechhhcCCCCEEehHHHHHHHHHHHHHHHHHcCCCH
Confidence 3444456667788888 677777778889999999874
No 116
>1syx_B CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2, CD; GYF-domain, thioredoxin-like, spliceosomal proteins, transla immune system complex; 2.35A {Homo sapiens} SCOP: d.76.1.1 PDB: 1gyf_A 1l2z_A
Probab=20.11 E-value=27 Score=26.88 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=26.1
Q ss_pred HHHcCCCCCCCceeeccCCccccccCceeeEEEE
Q 041441 251 LSRLGIDQDHLRFRQHLANEMAHYAADCWDAEIE 284 (310)
Q Consensus 251 l~~~Gi~~~~lrfr~~~~~E~AhYg~k~~D~e~~ 284 (310)
|.+-|.=.+++.+|........||..+|||++++
T Consensus 52 W~~~GYF~~~v~vRrvg~~~~~Fy~~~rIdF~ly 85 (86)
T 1syx_B 52 WVSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLY 85 (86)
T ss_dssp HHHTTSCTTCCEEEESSSTTCCCEEGGGCCGGGG
T ss_pred HHHCCCcCCCeEEEEecCCCCceEEeeeeeeEec
Confidence 3345776689999998644579999999998753
Done!