Query 041442
Match_columns 230
No_of_seqs 135 out of 601
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:07:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1664 Vacuolar H+-ATPase V1 100.0 6.2E-56 1.3E-60 359.0 28.7 218 1-229 1-218 (220)
2 PRK03963 V-type ATP synthase s 100.0 3.9E-35 8.5E-40 244.4 27.4 195 10-226 4-198 (198)
3 PF01991 vATP-synt_E: ATP synt 100.0 6.8E-35 1.5E-39 241.9 17.2 198 16-225 1-198 (198)
4 PRK02292 V-type ATP synthase s 100.0 1.2E-31 2.6E-36 221.8 25.9 185 10-227 3-188 (188)
5 PRK01194 V-type ATP synthase s 100.0 8.8E-31 1.9E-35 216.0 24.5 179 10-227 3-182 (185)
6 COG1390 NtpE Archaeal/vacuolar 100.0 6.2E-30 1.4E-34 211.6 25.8 192 9-227 3-194 (194)
7 PRK01558 V-type ATP synthase s 99.9 1E-23 2.3E-28 175.7 27.2 194 3-224 2-195 (198)
8 PRK01005 V-type ATP synthase s 99.9 7.3E-21 1.6E-25 159.1 25.8 192 3-227 7-207 (207)
9 TIGR03825 FliH_bacil flagellar 99.5 8.5E-12 1.8E-16 107.9 24.4 188 10-221 38-249 (255)
10 PRK06937 type III secretion sy 99.5 1.1E-11 2.3E-16 103.9 21.3 170 14-219 32-202 (204)
11 PRK09098 type III secretion sy 99.5 9.3E-11 2E-15 100.1 24.9 111 83-219 110-222 (233)
12 PRK06669 fliH flagellar assemb 99.4 1.6E-10 3.4E-15 101.4 25.3 113 83-218 163-276 (281)
13 PRK06328 type III secretion sy 99.4 1.8E-10 3.9E-15 97.8 24.0 172 14-220 31-204 (223)
14 TIGR02499 HrpE_YscL_not type I 99.2 6.2E-09 1.3E-13 83.9 21.5 149 13-200 14-164 (166)
15 COG1317 FliH Flagellar biosynt 99.2 5.8E-08 1.3E-12 83.0 25.1 188 2-220 38-228 (234)
16 TIGR03321 alt_F1F0_F0_B altern 98.9 1.3E-06 2.8E-11 75.2 23.5 170 13-216 61-245 (246)
17 PF06188 HrpE: HrpE/YscL/FliH 98.9 1E-06 2.2E-11 73.2 20.7 152 13-202 31-182 (191)
18 PRK13386 fliH flagellar assemb 98.8 4.9E-07 1.1E-11 77.4 18.5 104 84-217 120-226 (236)
19 PF02108 FliH: Flagellar assem 98.8 6.1E-07 1.3E-11 68.9 14.7 100 84-211 25-127 (128)
20 PRK05687 fliH flagellar assemb 98.7 3E-06 6.5E-11 72.9 18.9 107 84-218 133-242 (246)
21 PF06635 NolV: Nodulation prot 98.5 6.5E-05 1.4E-09 62.5 20.0 167 15-218 33-200 (207)
22 PRK06032 fliH flagellar assemb 98.4 0.00012 2.6E-09 61.1 20.1 110 84-216 85-196 (199)
23 PRK08475 F0F1 ATP synthase sub 98.2 5.7E-05 1.2E-09 61.4 13.4 92 9-116 74-165 (167)
24 PRK14474 F0F1 ATP synthase sub 98.0 0.0066 1.4E-07 52.5 22.6 165 15-215 63-244 (250)
25 PRK13436 F0F1 ATP synthase sub 96.9 0.0095 2.1E-07 48.9 9.9 32 184-217 147-178 (179)
26 PRK03963 V-type ATP synthase s 96.9 0.11 2.4E-06 43.0 15.8 171 4-219 9-195 (198)
27 PRK08404 V-type ATP synthase s 96.8 0.11 2.3E-06 38.9 13.5 76 10-85 11-86 (103)
28 PRK01005 V-type ATP synthase s 96.6 0.33 7.2E-06 40.8 20.4 57 5-65 20-76 (207)
29 PRK13430 F0F1 ATP synthase sub 96.6 0.054 1.2E-06 47.4 12.6 31 184-216 239-269 (271)
30 PRK13428 F0F1 ATP synthase sub 96.5 0.04 8.7E-07 51.5 11.8 31 184-216 413-443 (445)
31 PRK07352 F0F1 ATP synthase sub 96.5 0.33 7.2E-06 39.4 15.7 95 14-120 76-170 (174)
32 PRK01194 V-type ATP synthase s 96.4 0.17 3.6E-06 41.8 13.9 61 4-64 8-68 (185)
33 PRK06231 F0F1 ATP synthase sub 96.3 0.41 8.8E-06 40.2 15.7 97 12-120 103-199 (205)
34 CHL00019 atpF ATP synthase CF0 96.3 0.44 9.5E-06 39.1 15.6 96 13-120 80-175 (184)
35 PRK13460 F0F1 ATP synthase sub 96.1 0.56 1.2E-05 38.1 15.8 96 13-120 72-167 (173)
36 PRK13434 F0F1 ATP synthase sub 96.1 0.11 2.5E-06 42.6 11.2 32 184-217 143-174 (184)
37 PRK01558 V-type ATP synthase s 96.0 0.34 7.5E-06 40.3 13.8 34 4-37 14-47 (198)
38 COG2811 NtpF Archaeal/vacuolar 96.0 0.48 1E-05 35.6 13.8 48 9-56 25-72 (108)
39 PRK14473 F0F1 ATP synthase sub 95.9 0.68 1.5E-05 37.1 15.5 99 10-120 61-159 (164)
40 PRK15322 invasion protein OrgB 95.9 0.86 1.9E-05 38.0 20.0 159 13-215 13-173 (210)
41 PRK02292 V-type ATP synthase s 95.8 0.8 1.7E-05 37.5 15.3 47 4-50 8-54 (188)
42 PF01991 vATP-synt_E: ATP synt 95.7 0.85 1.8E-05 37.2 14.8 37 8-44 4-40 (198)
43 PRK13428 F0F1 ATP synthase sub 95.6 0.84 1.8E-05 42.8 16.2 96 14-120 58-153 (445)
44 PRK13461 F0F1 ATP synthase sub 95.5 0.95 2.1E-05 36.1 15.5 95 13-119 61-155 (159)
45 PRK13441 F0F1 ATP synthase sub 95.4 0.36 7.9E-06 39.4 11.4 32 184-217 146-177 (180)
46 COG0712 AtpH F0F1-type ATP syn 95.3 0.19 4.2E-06 41.2 9.6 31 184-216 147-177 (178)
47 TIGR02926 AhaH ATP synthase ar 95.2 0.77 1.7E-05 32.9 12.2 32 11-42 8-39 (85)
48 PRK14472 F0F1 ATP synthase sub 95.2 1.4 3E-05 35.8 15.6 33 14-46 75-107 (175)
49 PRK05759 F0F1 ATP synthase sub 95.0 1.4 3E-05 34.9 15.6 96 11-118 58-153 (156)
50 PRK14471 F0F1 ATP synthase sub 94.9 1.6 3.4E-05 35.0 16.1 34 11-44 62-95 (164)
51 TIGR01144 ATP_synt_b ATP synth 94.7 1.6 3.5E-05 34.2 15.6 35 12-46 50-84 (147)
52 PRK13455 F0F1 ATP synthase sub 94.6 2.1 4.6E-05 35.0 16.0 23 17-39 87-109 (184)
53 PRK00106 hypothetical protein; 94.5 3.6 7.8E-05 39.5 16.9 23 15-37 45-67 (535)
54 PRK13453 F0F1 ATP synthase sub 94.4 2.3 4.9E-05 34.5 15.7 35 14-48 75-109 (173)
55 PRK05758 F0F1 ATP synthase sub 94.0 1.2 2.6E-05 36.1 11.3 31 184-216 145-175 (177)
56 PRK15354 type III secretion sy 93.9 3.4 7.3E-05 34.7 20.4 122 13-146 42-171 (224)
57 PRK09174 F0F1 ATP synthase sub 93.9 3.1 6.6E-05 34.9 13.7 30 13-42 109-138 (204)
58 TIGR01145 ATP_synt_delta ATP s 93.7 1.7 3.6E-05 35.1 11.6 30 184-215 142-171 (172)
59 PRK09098 type III secretion sy 93.7 4.1 8.9E-05 34.8 20.4 52 5-56 43-94 (233)
60 CHL00118 atpG ATP synthase CF0 93.4 3.2 7E-05 33.0 13.4 35 12-46 77-111 (156)
61 PRK14475 F0F1 ATP synthase sub 93.3 3.6 7.9E-05 33.1 16.2 25 14-38 67-91 (167)
62 TIGR03319 YmdA_YtgF conserved 93.1 7.8 0.00017 37.1 16.7 23 15-37 24-46 (514)
63 PRK06568 F0F1 ATP synthase sub 93.0 4 8.7E-05 32.7 14.1 26 12-37 59-84 (154)
64 PRK08476 F0F1 ATP synthase sub 92.8 3.3 7.1E-05 32.5 11.6 41 13-53 63-103 (141)
65 PRK13429 F0F1 ATP synthase sub 92.5 2.7 6E-05 34.1 11.2 31 184-216 147-177 (181)
66 COG0711 AtpF F0F1-type ATP syn 92.2 5.1 0.00011 32.2 14.7 25 13-37 62-86 (161)
67 PRK08474 F0F1 ATP synthase sub 92.2 1.8 4E-05 35.2 9.7 32 187-222 143-174 (176)
68 PRK09173 F0F1 ATP synthase sub 92.0 5.2 0.00011 31.8 14.1 38 83-121 117-154 (159)
69 PF00213 OSCP: ATP synthase de 92.0 0.041 8.8E-07 44.5 -0.2 33 181-215 139-171 (172)
70 CHL00119 atpD ATP synthase CF1 92.0 2.4 5.2E-05 34.7 10.3 32 184-217 149-180 (184)
71 PRK13454 F0F1 ATP synthase sub 91.9 4.5 9.7E-05 33.1 11.7 32 12-43 86-117 (181)
72 COG1390 NtpE Archaeal/vacuolar 91.8 6.7 0.00015 32.6 14.0 116 20-154 3-118 (194)
73 PF00430 ATP-synt_B: ATP synth 91.5 2.6 5.7E-05 32.0 9.5 35 12-46 54-88 (132)
74 COG2811 NtpF Archaeal/vacuolar 91.4 4.9 0.00011 30.2 15.3 36 1-36 3-41 (108)
75 PRK07353 F0F1 ATP synthase sub 91.3 5.6 0.00012 30.8 13.6 34 13-46 61-94 (140)
76 PRK09173 F0F1 ATP synthase sub 91.3 6.3 0.00014 31.3 16.0 11 139-149 144-154 (159)
77 PRK12704 phosphodiesterase; Pr 91.2 15 0.00032 35.3 17.0 21 16-36 31-51 (520)
78 TIGR02926 AhaH ATP synthase ar 89.9 5.5 0.00012 28.3 12.9 44 10-53 18-61 (85)
79 PRK06231 F0F1 ATP synthase sub 89.6 11 0.00024 31.5 15.5 9 139-147 190-198 (205)
80 PRK14475 F0F1 ATP synthase sub 89.2 10 0.00022 30.5 15.1 11 110-120 151-161 (167)
81 TIGR03319 YmdA_YtgF conserved 88.4 24 0.00052 33.8 17.8 31 8-38 32-62 (514)
82 TIGR03321 alt_F1F0_F0_B altern 88.4 15 0.00033 31.4 17.4 48 6-57 69-116 (246)
83 PF12072 DUF3552: Domain of un 87.8 15 0.00032 30.6 16.3 22 17-38 28-49 (201)
84 PRK06568 F0F1 ATP synthase sub 87.8 7.9 0.00017 31.0 9.7 24 74-97 102-125 (154)
85 PRK12704 phosphodiesterase; Pr 87.7 27 0.00058 33.5 17.8 29 9-37 39-67 (520)
86 PRK14474 F0F1 ATP synthase sub 86.7 20 0.00043 31.0 15.8 8 117-124 193-200 (250)
87 PRK00106 hypothetical protein; 86.7 31 0.00068 33.2 17.9 25 196-221 291-315 (535)
88 PRK08404 V-type ATP synthase s 84.6 14 0.00031 27.4 14.1 35 20-58 10-44 (103)
89 PF03179 V-ATPase_G: Vacuolar 84.2 14 0.00031 27.1 11.7 28 10-37 12-39 (105)
90 CHL00019 atpF ATP synthase CF0 84.2 21 0.00046 29.1 15.1 10 138-147 165-174 (184)
91 TIGR03825 FliH_bacil flagellar 83.9 27 0.00058 30.1 18.9 44 5-48 44-90 (255)
92 PF03179 V-ATPase_G: Vacuolar 83.4 16 0.00034 26.9 12.9 77 18-106 9-85 (105)
93 PRK14473 F0F1 ATP synthase sub 83.0 22 0.00047 28.3 15.6 10 138-147 149-158 (164)
94 KOG1662 Mitochondrial F1F0-ATP 82.3 3.3 7.2E-05 34.5 5.2 29 184-214 176-204 (210)
95 PRK13461 F0F1 ATP synthase sub 82.2 23 0.0005 28.0 15.3 6 141-146 149-154 (159)
96 PRK13460 F0F1 ATP synthase sub 81.1 27 0.00059 28.1 15.4 7 140-146 159-165 (173)
97 PRK06669 fliH flagellar assemb 80.9 37 0.0008 29.6 16.8 37 187-223 234-277 (281)
98 PRK14471 F0F1 ATP synthase sub 80.2 28 0.00061 27.7 14.5 37 84-120 124-160 (164)
99 PRK07352 F0F1 ATP synthase sub 76.1 39 0.00085 27.2 17.3 7 140-146 162-168 (174)
100 PRK12705 hypothetical protein; 73.4 89 0.0019 30.0 16.0 27 10-36 31-57 (508)
101 PRK08476 F0F1 ATP synthase sub 71.6 46 0.001 25.9 11.6 9 28-36 67-75 (141)
102 PRK12705 hypothetical protein; 69.8 1.1E+02 0.0023 29.4 17.2 37 6-42 42-78 (508)
103 PF12072 DUF3552: Domain of un 68.7 66 0.0014 26.6 17.9 26 11-36 33-58 (201)
104 TIGR01144 ATP_synt_b ATP synth 61.5 74 0.0016 24.6 15.1 9 110-118 136-144 (147)
105 PRK07353 F0F1 ATP synthase sub 61.0 73 0.0016 24.4 14.1 11 80-90 109-119 (140)
106 PRK09174 F0F1 ATP synthase sub 61.0 98 0.0021 25.8 15.2 12 92-103 150-161 (204)
107 PRK10780 periplasmic chaperone 56.1 1E+02 0.0022 24.5 11.1 52 82-147 111-162 (165)
108 PF06188 HrpE: HrpE/YscL/FliH 54.7 1.2E+02 0.0026 25.0 14.5 16 21-36 28-43 (191)
109 PF11657 Activator-TraM: Trans 52.0 1.2E+02 0.0026 24.1 13.4 35 4-38 23-57 (144)
110 PRK06328 type III secretion sy 47.4 1.7E+02 0.0038 24.6 18.6 113 3-120 31-152 (223)
111 PHA02571 a-gt.4 hypothetical p 42.2 1.3E+02 0.0027 22.7 6.2 35 2-36 12-46 (109)
112 KOG1029 Endocytic adaptor prot 39.0 4.5E+02 0.0096 27.0 12.1 30 7-36 326-355 (1118)
113 PF15513 DUF4651: Domain of un 38.8 65 0.0014 21.8 3.9 14 184-199 34-47 (62)
114 PRK06569 F0F1 ATP synthase sub 38.8 2E+02 0.0044 23.0 13.2 19 109-127 125-143 (155)
115 PF10669 Phage_Gp23: Protein g 36.7 1.7E+02 0.0038 21.6 6.1 38 50-89 54-91 (121)
116 PRK13454 F0F1 ATP synthase sub 35.9 2.4E+02 0.0051 22.9 15.0 6 139-144 168-173 (181)
117 KOG2880 SMAD6 interacting prot 32.5 4E+02 0.0087 24.5 9.1 41 9-49 81-121 (424)
118 TIGR00570 cdk7 CDK-activating 26.6 4.7E+02 0.01 23.4 12.2 23 71-93 166-188 (309)
119 TIGR01147 V_ATP_synt_G vacuola 26.3 2.9E+02 0.0063 20.9 12.7 38 87-124 68-105 (113)
120 PF07960 CBP4: CBP4; InterPro 26.1 50 0.0011 25.7 1.9 46 109-154 4-49 (128)
121 TIGR01932 hflC HflC protein. H 25.9 4.7E+02 0.01 23.2 13.5 24 118-142 289-313 (317)
122 PHA03065 Hypothetical protein; 25.3 5.8E+02 0.012 24.0 12.6 82 81-169 112-198 (438)
123 PF04716 ETC_C1_NDUFA5: ETC co 24.7 2.1E+02 0.0046 18.8 6.5 39 88-127 6-44 (57)
124 PF10946 DUF2625: Protein of u 23.1 56 0.0012 27.5 1.8 56 110-204 11-66 (208)
125 TIGR01069 mutS2 MutS2 family p 22.2 8.3E+02 0.018 24.7 13.9 8 71-78 564-571 (771)
126 PF01086 Clathrin_lg_ch: Clath 21.9 2.1E+02 0.0045 24.2 5.1 15 135-149 202-216 (225)
127 PF03938 OmpH: Outer membrane 21.5 3.8E+02 0.0083 20.6 10.0 18 129-147 138-155 (158)
128 PF09561 RE_HpaII: HpaII restr 20.8 1.1E+02 0.0025 27.9 3.4 23 184-206 289-311 (355)
129 KOG0066 eIF2-interacting prote 20.6 2.4E+02 0.0051 27.1 5.5 17 185-201 749-765 (807)
130 KOG4702 Uncharacterized conser 20.4 3E+02 0.0065 19.1 4.6 31 2-32 43-74 (77)
131 PTZ00491 major vault protein; 20.3 9.6E+02 0.021 24.7 11.8 10 109-118 789-798 (850)
No 1
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=100.00 E-value=6.2e-56 Score=358.96 Aligned_cols=218 Identities=50% Similarity=0.748 Sum_probs=214.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 1 MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIK 80 (230)
Q Consensus 1 ~~~~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~ 80 (230)
|||++|+++|++|+.||++||++||+||..+|++||++||.+++++++.+|++.|++++++++++++|+.|+..|++|++
T Consensus 1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK 80 (220)
T KOG1664|consen 1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK 80 (220)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCC
Q 041442 81 FLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQ 160 (230)
Q Consensus 81 ~L~ar~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~ 160 (230)
+|.+|+++|+.+|++|+.+|...+.+++.|+.+|.+||.||+..|.+|.++|+|++.|.++|+..++++..+|....|..
T Consensus 81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka~~~ 160 (220)
T KOG1664|consen 81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEPEVIVRCREKDLKLVEAALPKAIEEYKEKAGVG 160 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCCeeEEeehhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999987
Q ss_pred CCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcCCCC
Q 041442 161 APKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVG 229 (230)
Q Consensus 161 ~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~~~~ 229 (230)
.++.+|.+.|||+ +|.|||+|.+.||+|.|+|||++||+.++++.+|+||+.|||+++
T Consensus 161 -~e~~id~~~fL~~----------~~~GGVvl~s~dgkI~v~NTLesRLeli~~q~lPeIR~aLFG~n~ 218 (220)
T KOG1664|consen 161 -VEVQIDKKDFLPP----------DVAGGVVLYSRDGKIKVSNTLESRLELIAEQKLPEIRKALFGANP 218 (220)
T ss_pred -ceeeechhccCCc----------cccCCeEEEcCCCceEecCcHHHHHHHHHHHhhHHHHHHhcCCCC
Confidence 8999999999996 899999999999999999999999999999999999999999886
No 2
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=100.00 E-value=3.9e-35 Score=244.37 Aligned_cols=195 Identities=27% Similarity=0.365 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAV 89 (230)
Q Consensus 10 i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i 89 (230)
|+++++.|+++|+.++++|..+|+.+++........+.......-.++...+++..+++.+|.+.++.|+++|.+|++++
T Consensus 4 l~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~ 83 (198)
T PRK03963 4 AELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELI 83 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999865444433322222222223345667777888899999999999999999999
Q ss_pred HHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecCc
Q 041442 90 NAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDK 169 (230)
Q Consensus 90 ~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~~ 169 (230)
+++|+.|+++|.+++.+ .|+.||.+||.+|+..+++++++|+|+|.|..++..+++.+...+ | +++++++.
T Consensus 84 ~~v~~~a~~~l~~~~~~--~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~~~~~~~~~~~~~~~----~--~~~i~~~~- 154 (198)
T PRK03963 84 SEVLEAVRERLAELPED--EYFETLKALTKEAVEELGEDKVVVRSNERTLKLIDSRLEEIRDEL----G--DVEIELGE- 154 (198)
T ss_pred HHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHhCCCcEEEEEccccHHHHHHHHHHHHHHh----C--CeEEEECC-
Confidence 99999999999999886 799999999999999999999999999999999999887665433 3 14555542
Q ss_pred cCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcC
Q 041442 170 VFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226 (230)
Q Consensus 170 ~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~ 226 (230)
| .+|.|||||+|++|+|+|||||++||+.++++++|+|++.|||
T Consensus 155 ------~-------~~~~GGvil~s~~g~i~~dnT~e~~l~~~~~~~~~~i~~~LF~ 198 (198)
T PRK03963 155 ------P-------IETIGGVIVETKDGTIRVDNTFEARMERLESELRAKIAKALFG 198 (198)
T ss_pred ------C-------CCccceEEEEeCCCCEEEeCcHHHHHHHHHHHhHHHHHHHhcC
Confidence 1 4799999999999999999999999999999999999999997
No 3
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=100.00 E-value=6.8e-35 Score=241.94 Aligned_cols=198 Identities=31% Similarity=0.440 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 16 FIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEA 95 (230)
Q Consensus 16 ~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v~~~ 95 (230)
+|.++|+.+|++|..+|+++++.......++....+...+.+..++++..+.++.|.+.+.+|+.+|.+|+++++++|++
T Consensus 1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~ 80 (198)
T PF01991_consen 1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE 80 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999998888877777777777777788888888889999999999999999999999999999
Q ss_pred HHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecCccCCCCC
Q 041442 96 ASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPP 175 (230)
Q Consensus 96 a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~~~~L~~~ 175 (230)
++++|.+++.+++.|..+|.+||.+++..+++++++|+|+|.|.++++.+++.+...|+...|..++.+..++ .+|
T Consensus 81 ~~~~L~~~~~~~~~Y~~~L~~li~~~~~~~~~~~~~v~~~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~--- 156 (198)
T PF01991_consen 81 VKEKLKSFSKDPDDYKKFLKKLIEEAAEKLGEGEVIVYVNKKDLELVKEILKRIKKELKSKAGKDSVEVSVDS-DYL--- 156 (198)
T ss_dssp HHHHHHCTTCCC-THHHHHHHHHHHHHHCCTTSCEEEEECCHHHHCCHCCHCCCCCCHCCCSSTTTEEEEE-T-------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCceEEecccchHHHHHHHHHHHHHHHHHHhCCCcceeecCc-ccc---
Confidence 9999999999866799999999999999999999999999999999999876555566544443322333332 222
Q ss_pred CCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhc
Q 041442 176 PKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLL 225 (230)
Q Consensus 176 ~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF 225 (230)
.+|+|||+|+++||+|+|||||++||+.+++.+.|.|++.||
T Consensus 157 --------~~~~GG~il~~~dg~i~vd~T~e~~l~~~~~~~~~~i~~~LF 198 (198)
T PF01991_consen 157 --------IDIIGGFILESEDGKIRVDNTFESRLERLKEEIRPEIAKILF 198 (198)
T ss_dssp --------BSSSSEEEEECSSSSCEEEEEHHHHHHHCHHHHHHHHHHHHC
T ss_pred --------CCccceEEEEECCCCEEEECCHHHHHHHHHHHhHHHHHHHcC
Confidence 379999999999999999999999999999999999999999
No 4
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=100.00 E-value=1.2e-31 Score=221.77 Aligned_cols=185 Identities=29% Similarity=0.440 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERK-SKQAEARRKIEYSMQLNAARIKFLQAQDDA 88 (230)
Q Consensus 10 i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~-~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~ 88 (230)
|+++++.|+++|+.++++|..+|+.+++.-... ..++..++..++.++ .++.....++..|.+.+..|+.+|.+|+++
T Consensus 3 l~~i~~~I~~~a~~e~~~I~~ea~~~~~~i~~e-a~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~ 81 (188)
T PRK02292 3 LETVVEDIRDEARARASEIRAEADEEAEEIIAE-AEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEV 81 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999998532221 122222354444433 444555566778999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecC
Q 041442 89 VNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDD 168 (230)
Q Consensus 89 i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~ 168 (230)
|+++|..|+++|.+++.+ .|..||.+||.++ ++++++|+|+|.|..+++.++... + .+++..
T Consensus 82 l~~v~~~a~~kL~~~~~~--~y~~~l~~li~~~----~~~~~~i~~~~~D~~~~~~~~~~~----~--------~~~~~~ 143 (188)
T PRK02292 82 LEDVRNQVEDEIASLDGD--KREELTKSLLDAA----DADGVRVYSRKDDEDLVKSLLSDY----D--------GLEYAG 143 (188)
T ss_pred HHHHHHHHHHHHHhcchh--hHHHHHHHHHHhc----CCCCeEEEEccccHHHHHHHHHhc----c--------cCeeCC
Confidence 999999999999999986 7999999999998 467889999999999999987632 1 122221
Q ss_pred ccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcCC
Q 041442 169 KVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGK 227 (230)
Q Consensus 169 ~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~~ 227 (230)
+ .+|.|||||++++|+|+|||||++||+.++++++|+|++.|||.
T Consensus 144 ------~--------~~~~GGvil~~~~g~I~~dnT~~~rl~~~~~~~~~~i~~~LF~~ 188 (188)
T PRK02292 144 ------N--------IDCLGGVVVESEDGRVRVNNTFDSILEDVWEDNLKEISDRLFGE 188 (188)
T ss_pred ------C--------CCCCceEEEEecCCceEEeccHHHHHHHHHHHhhHHHHHHhcCC
Confidence 1 37899999999999999999999999999999999999999984
No 5
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=100.00 E-value=8.8e-31 Score=215.99 Aligned_cols=179 Identities=20% Similarity=0.317 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERK-SKQAEARRKIEYSMQLNAARIKFLQAQDDA 88 (230)
Q Consensus 10 i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~-~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~ 88 (230)
|+++++.|+++|+++|++|..+|+.+++.-... ..++.+++...|.++ ..++...+++.+|.|.+++|+.+|.+|+++
T Consensus 3 le~i~~~I~~ea~~~a~~I~~eA~~~aeei~~e-a~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~ 81 (185)
T PRK01194 3 LEDVIKDIEKSREEKKKEINDEYSKRIEKLEKE-CDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREI 81 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 788999999999999999999999998532211 233334455666544 567777788889999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecC
Q 041442 89 VNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDD 168 (230)
Q Consensus 89 i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~ 168 (230)
|+++|+.|+++|.++++++ .|+++|.+||.+|+..+ ++.++|+|++.|..++++. ++++.
T Consensus 82 I~~v~~~a~e~L~~l~~~~-~Y~~~L~~LI~~a~~~l-~~~~~v~~~~~D~~~i~~~-----------------~l~~~- 141 (185)
T PRK01194 82 LKDYLDIAYEHLMNITKSK-EYDSILNKMIEVAIKTL-GEDCIIKVSESDKKKINNA-----------------KIKFA- 141 (185)
T ss_pred HHHHHHHHHHHHHcccCCc-hHHHHHHHHHHHHHHhc-CCCeEEEEcHHhHHHHHhC-----------------ceeeC-
Confidence 9999999999999999776 89999999999999984 5789999999999988652 23322
Q ss_pred ccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcCC
Q 041442 169 KVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGK 227 (230)
Q Consensus 169 ~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~~ 227 (230)
+ .+|.|||||+|.+|+|.+||||++++ ++++|.||..||..
T Consensus 142 ----~----------~~~~GGvil~s~dG~I~ld~~l~~~~----~~~~~~iR~~lf~~ 182 (185)
T PRK01194 142 ----D----------IDPYGGILAYSRDGKRELDLRLSSIF----ENILEDLKVYFYEN 182 (185)
T ss_pred ----C----------ccccccEEEEeCCCcEEehhhHHHHH----HHhHHHHHHHHHhh
Confidence 1 37999999999999999999999977 78889999999974
No 6
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=99.98 E-value=6.2e-30 Score=211.64 Aligned_cols=192 Identities=32% Similarity=0.461 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDA 88 (230)
Q Consensus 9 ~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~ 88 (230)
.++.|+++|.++|++++++|...|.++++..+.+........+..-+.+..++++..+++++|+|.+++|+++|++++++
T Consensus 3 ~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~ 82 (194)
T COG1390 3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEI 82 (194)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999888887777666666666677889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecC
Q 041442 89 VNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDD 168 (230)
Q Consensus 89 i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~ 168 (230)
|+.+|+.+.++|.+++.+| +|.. |..|+.+++..+.+++++|++++.|..++.+++.+ .+ ..+
T Consensus 83 l~~~~~~~~e~L~~i~~~~-~~~~-l~~ll~~~~~~~~~~~~iV~~~e~d~~~v~~~~~~--------~~---~~~---- 145 (194)
T COG1390 83 LESVFEAVEEKLRNIASDP-EYES-LQELLIEALEKLLGGELVVYLNEKDKALVEQILRE--------LK---IGV---- 145 (194)
T ss_pred HHHHHHHHHHHHHcCcCCc-chHH-HHHHHHHHHHhcCCCCeEEEeCcccHHHHHHHHhh--------cc---cch----
Confidence 9999999999999999998 5655 99999999999999999999999999998887653 11 111
Q ss_pred ccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcCC
Q 041442 169 KVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGK 227 (230)
Q Consensus 169 ~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~~ 227 (230)
.+++. .+|.|||+++++||++.+||||++||+.+++.+.|.|++.||++
T Consensus 146 --~~~~~--------~d~~GGvvv~~~dG~i~~dnt~~sil~~~~e~~~~~i~~~lf~~ 194 (194)
T COG1390 146 --ELGEG--------IDIIGGVVVESRDGKIRLDNTFESILERVLEELLPEISEKLFGV 194 (194)
T ss_pred --hcccc--------CCCcceEEEEeCCCceeecCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22221 48999999999999999999999999999999999999999984
No 7
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=99.94 E-value=1e-23 Score=175.71 Aligned_cols=194 Identities=20% Similarity=0.258 Sum_probs=155.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 3 DADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFL 82 (230)
Q Consensus 3 ~~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L 82 (230)
+.++++-+++|.+.|..+|+++|++|+.+|+++++ .|+.+.+.+...-..+..++++..+++..|++.+..|..+|
T Consensus 2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~eAe----~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll 77 (198)
T PRK01558 2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEEAE----EIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI 77 (198)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999995 66666655555555566677777778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCC
Q 041442 83 QAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAP 162 (230)
Q Consensus 83 ~ar~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~ 162 (230)
.+++.+++.+...+.+.+.+.. +++.|..++..|+..+. +++++.|+++|.|...+++.+.. .+...+|.
T Consensus 78 ~~k~~i~~~~~~~~~~~~~~~~-~~e~~~~li~~ll~~~~---~~~~~~I~~~~~D~~~l~~~~~~---~~~~~l~~--- 147 (198)
T PRK01558 78 SFEKSIKSLFKAALKDEVAEVY-DSNFLRELIIRVVDSWV---KGDKLEIILNESDLSELESILRA---ALGNKLKK--- 147 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhc---CCCCeeEEECHHHHHHhHHHHHH---HHHHHhcC---
Confidence 9999999866444444445433 44589999999999875 45788999999999998876542 33333332
Q ss_pred eeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHh
Q 041442 163 KITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRL 224 (230)
Q Consensus 163 ~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~L 224 (230)
.+++.. + .+|.|||+|.+.||++.+||||+++.+.+.+.+.|.++++|
T Consensus 148 gi~i~~------~--------~~~~gG~iv~~~dg~i~id~T~ea~~~~l~~~L~~~~~~~l 195 (198)
T PRK01558 148 GIELKP------F--------KGISKGFKIQQKDGSLYYDFSAEAIADILFSYLNPRFKEVI 195 (198)
T ss_pred CeEEcc------c--------CCcccceEEEEcCCCeEEeCcHHHHHHHHHHHhcHHHHHHH
Confidence 355542 1 47999999999999999999999999999999999999987
No 8
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=99.90 E-value=7.3e-21 Score=159.06 Aligned_cols=192 Identities=15% Similarity=0.172 Sum_probs=148.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 3 DADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFL 82 (230)
Q Consensus 3 ~~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L 82 (230)
++.+++-+++|.+.|+.+|+.+|.+|+.+|+++++ .++.+.+.+......+..++++..+++..|++.+.+|+.+|
T Consensus 7 ~~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae----~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l 82 (207)
T PRK01005 7 QDKLKQICDALREETLKPAEEEAGAIVHNAKEQAK----RIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLE 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678888999999999999999999999999995 46666665555555555667777777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-ccChhhHHHHHHHHHHHHHHhhcCC----c----EEEEeccccHHHHHHHHHHHHHHH
Q 041442 83 QAQDDAVNAMKEAASKELLNV-SNDKNKYRTVLKGLIVQSMLRLNEK----A----VLLRCREMDRKLVESIVEEAKKEF 153 (230)
Q Consensus 83 ~ar~~~i~~v~~~a~ekL~~l-~~~~~~Y~~~L~~Li~ea~~~l~~~----~----~~v~~~~~D~~~v~~~~~~~~~~~ 153 (230)
.+++++++.+|..+.++|..- ..+| .||.+||...+...... + +...++|.+..-. +...+.+.+
T Consensus 83 ~aKqevi~~vf~~a~~~lv~~~~~d~----~~l~~lI~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~l 156 (207)
T PRK01005 83 SLKQAVENKIFRESLGEWLEHVLTDP----EVSAKLIQALVQAIEAQGISGNLTAYIGKHVSARAVNEL--LGKEVTKKL 156 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHhhcccccccchhhhhcCCHHHHHHH--HHHHHHHHH
Confidence 999999999999999999773 4454 88888888766655321 1 2335666555432 333323333
Q ss_pred HHhhCCCCCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcCC
Q 041442 154 AEKTKRQAPKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGK 227 (230)
Q Consensus 154 ~~~~g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~~ 227 (230)
.. ..|++.. ..|||+|.+.||++.+|||++++++.+|+.+.|.++.+|||+
T Consensus 157 ~~------~gv~~~~-----------------~~gG~~v~~~dg~~~vd~t~d~i~~~~~~~l~~~~~~~LF~~ 207 (207)
T PRK01005 157 KE------KGVSVGS-----------------FVGGAQLKVEEKNWVLDLSSQTLLDLLTRYLQKDFREMIFQG 207 (207)
T ss_pred HH------cCeEEec-----------------cCCceEEEecCCeeEEeCcHHHHHHHHHHHhhHHHHHHhcCC
Confidence 21 1355541 269999999999999999999999999999999999999985
No 9
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=99.53 E-value=8.5e-12 Score=107.94 Aligned_cols=188 Identities=20% Similarity=0.208 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH-----HHH----HHHHHHH--HHHHH---
Q 041442 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLF------EAEKKKIKQE-----YER----KSKQAEA--RRKIE--- 69 (230)
Q Consensus 10 i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~------~~~~~~i~~e-----~~k----~~~~~e~--~~~i~--- 69 (230)
...-...++.+|+.+|.+|+.+|+.+++.....+. ..+..++..+ |+. -..+... ...+.
T Consensus 38 ~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~eGy~eG~~~G~~e~~~~~~~~i~~a~ 117 (255)
T TIGR03825 38 EEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEAGFQAGESEALSIYQSTIDEAN 117 (255)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888888888765433331 1122222222 111 0111100 11110
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccChhhHHHHHHHHHHHHHHhhcC-CcEEEEeccccHHHHHHH
Q 041442 70 --YSMQLNAARIKFLQAQDDAVNAMKEAASKELLNV-SNDKNKYRTVLKGLIVQSMLRLNE-KAVLLRCREMDRKLVESI 145 (230)
Q Consensus 70 --~S~~~~~~R~~~L~ar~~~i~~v~~~a~ekL~~l-~~~~~~Y~~~L~~Li~ea~~~l~~-~~~~v~~~~~D~~~v~~~ 145 (230)
+..+.......+-..+.++++-++.-|..=+... ..++ ..+..|+.+++..+++ +.++|+|+|.|.+.+...
T Consensus 118 ~i~~~a~~~~~~~l~~~e~el~~La~~iAeKIi~~el~~~~----e~i~~lv~~al~~l~~~~~i~I~v~p~d~~~v~~~ 193 (255)
T TIGR03825 118 AIVEEAKDDYEEKIESAQPLIIELACALAEKVIGVSLAEDK----NAFQALVRQVLSEVREFDEVSIYVHPHWYERVAAQ 193 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH----HHHHHHHHHHHHhccCCCcEEEEECHHHHHHHHHh
Confidence 1111111122222345555555555554444443 3343 5688999999988877 679999999999999887
Q ss_pred HHHHHHHHHHhhCCCCCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHH
Q 041442 146 VEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIR 221 (230)
Q Consensus 146 ~~~~~~~~~~~~g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~ 221 (230)
.+.+...++...+ +.|..|+ . -..|||+|.+++|. ||+|+++||+.+++.++-.+.
T Consensus 194 ~~~l~~~~~~~~~---i~i~~D~--~-------------l~~GgcvIEt~~G~--iDasldtqLe~l~~~l~~~l~ 249 (255)
T TIGR03825 194 KDELQSILPACEH---LAVYPDE--K-------------LPDGGCYVETNFGR--IDASVDTQLEQLKEKLLEALK 249 (255)
T ss_pred HHHHHhhcCCCCc---eEEEeCC--C-------------CCCCCeEEEcCCce--EEeeHHHHHHHHHHHHHHHHh
Confidence 7655544432211 2344442 3 34699999999999 699999999999888876654
No 10
>PRK06937 type III secretion system protein; Reviewed
Probab=99.49 E-value=1.1e-11 Score=103.93 Aligned_cols=170 Identities=17% Similarity=0.211 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 14 VRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMK 93 (230)
Q Consensus 14 ~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v~ 93 (230)
.+.|+..|+++|++|...|+++++..+..=.+++..+-..+.. ..+. ....+.........+++++=++
T Consensus 32 A~~il~~A~~~A~~i~~~A~~~~e~~~~~Gy~~G~~~a~~e~~---------e~l~--~~~~~~~~~~~~~e~~l~~Lvl 100 (204)
T PRK06937 32 AEELVEAARQRAEEIEAEAQEVYEQQKQLGYQAGLDEARTEQA---------ELIL--ETVLQCQEFYRGVEQQMSEVVL 100 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999865443333333322222111 1111 1112222233445566666666
Q ss_pred HHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcC-CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecCccCC
Q 041442 94 EAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNE-KAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFL 172 (230)
Q Consensus 94 ~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~-~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~~~~L 172 (230)
.-+++=+..+. -+.++..++.+++..+.+ +.++|+|+|.|.+.+...+......+++. + .+.|..|+ .|
T Consensus 101 ~ia~kil~~~~-----~~e~i~~lv~~al~~l~~~~~v~I~V~P~D~~~v~~~~~~~~~~~~~~-~--~l~i~~D~--~L 170 (204)
T PRK06937 101 EAVRKILNDYD-----DVERTLQVVREALALVSNQKQVVVRVNPDQAAAVREQIAKVLKDFPEV-G--YLEVVADA--RL 170 (204)
T ss_pred HHHHHHHhccC-----cHHHHHHHHHHHHHhcccCCeEEEEECHHHHHHHHHHHHHHHHhCCCC-c--cEEEEeCC--CC
Confidence 65544444332 247888999999998876 58999999999999998776554444321 1 13444453 33
Q ss_pred CCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHH
Q 041442 173 PPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPE 219 (230)
Q Consensus 173 ~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~ 219 (230)
..|||+|.++.|. ||+||++||+.+.+.+...
T Consensus 171 -------------~~Ggc~iET~~G~--vDasl~tql~~l~~al~~~ 202 (204)
T PRK06937 171 -------------DQGGCILETEVGI--IDASLDGQLEALEQAFHST 202 (204)
T ss_pred -------------CCCCeEEecCCce--EEccHHHHHHHHHHHHHHH
Confidence 3599999999998 6999999998887766543
No 11
>PRK09098 type III secretion system protein HrpB; Validated
Probab=99.46 E-value=9.3e-11 Score=100.09 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhc--CCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCC
Q 041442 83 QAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLN--EKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQ 160 (230)
Q Consensus 83 ~ar~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~--~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~ 160 (230)
..++++++-++..++.-+... +| ..|-..+.+++..+. .+.++|+|+|.|.+.+...+...... .|+.
T Consensus 110 ~~e~~Lv~lv~~~v~kiv~~~--d~----~~ll~~v~~al~~~~~~~~~v~IrV~P~D~~~v~~~~~~~~~~----~g~~ 179 (233)
T PRK09098 110 RMRERLAEIVAAAVEQIVLGE--DR----AALFARAAQTLERVVDGASYLTVRVHPADLDAARAAFGAAAAA----GGRN 179 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CH----HHHHHHHHHHHHHHhccCCcEEEEECHHHHHHHHHHHHHHHHh----cCCC
Confidence 357788888888777666543 33 455567777776553 36899999999999999877654433 3332
Q ss_pred CCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHH
Q 041442 161 APKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPE 219 (230)
Q Consensus 161 ~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~ 219 (230)
..+.|-.+..|+ .||+++.+..|.| |+|++++|+.+.+-+...
T Consensus 180 -~~l~Iv~Dp~L~-------------~GgCviET~~G~I--Dasl~~ql~~L~~al~~~ 222 (233)
T PRK09098 180 -VPVEVVGDPRLA-------------PGACVCEWDFGVF--DASLDTQLRALRRALARA 222 (233)
T ss_pred -cceEEEeCCCCC-------------CCCeEEEeCCCeE--ecCHHHHHHHHHHHHHHH
Confidence 234444334454 4999999999984 999999998887766543
No 12
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=99.43 E-value=1.6e-10 Score=101.38 Aligned_cols=113 Identities=18% Similarity=0.302 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcC-CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCC
Q 041442 83 QAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNE-KAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQA 161 (230)
Q Consensus 83 ~ar~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~-~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~ 161 (230)
....++++-++.-|..=|..+.. ..+.++..++.+++..+.+ +.++|+|+|.|.+++.....++...+.... .
T Consensus 163 ~~e~elv~Lal~iaekvi~~~~~---~~~~~i~~li~~al~~l~~~~~i~I~V~p~d~~~l~~~~~~l~~~l~~~~---~ 236 (281)
T PRK06669 163 SSEEEIVELALDIAKKVIKEISE---NSKEIALALVKELLKEVKDATDITIRVNPEDYEYVKEQKDELISLLDNEE---H 236 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHcCcCCcEEEEECHHHHHHHHHhHHHHHHhcCCCC---C
Confidence 35666777777777655544433 3568889999999998876 679999999999999998876655554321 2
Q ss_pred CeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHH
Q 041442 162 PKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLP 218 (230)
Q Consensus 162 ~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p 218 (230)
+.|..|+ .| ..|||+|.+.+|. ||+|+++||+.+++.+..
T Consensus 237 i~I~~D~--~l-------------~~GgcvIet~~G~--IDasi~tqLe~l~~~L~e 276 (281)
T PRK06669 237 LKIYEDD--AI-------------SKGGCVIETDFGN--IDARIDTQLKQLKEKLLE 276 (281)
T ss_pred eEEEECC--CC-------------CCCCeEEEcCCCe--eeccHHHHHHHHHHHHHh
Confidence 3454442 33 3499999999888 699999999988877643
No 13
>PRK06328 type III secretion system protein; Validated
Probab=99.42 E-value=1.8e-10 Score=97.78 Aligned_cols=172 Identities=14% Similarity=0.162 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 14 VRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMK 93 (230)
Q Consensus 14 ~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v~ 93 (230)
.+.|+..|+++|++|..+|.++++..+..-.+++...-..++.... ..+........-....++++-++
T Consensus 31 A~~il~~a~~~ae~i~~ea~~e~E~i~eeA~~eGy~eG~~~~~~~~-----------~~l~~~~~~~~~~~e~~lv~Lal 99 (223)
T PRK06328 31 AQELLEKTKEDSEAYTQETHEECEKLREEAKNQGFKEGSKAWSKQL-----------AFLEEETQKLREQVKEALVPLAI 99 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999988865444433334333322221111 11111111112234466777777
Q ss_pred HHHHHHHhh-hccChhhHHHHHHHHHHHHHHhhcC-CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecCccC
Q 041442 94 EAASKELLN-VSNDKNKYRTVLKGLIVQSMLRLNE-KAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVF 171 (230)
Q Consensus 94 ~~a~ekL~~-l~~~~~~Y~~~L~~Li~ea~~~l~~-~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~~~~ 171 (230)
.-|+.=+.. +..++ ..+..++.+++..+.+ +.++|+|+|.|.+++....+++...+.+..+ +.|..|+ .
T Consensus 100 ~ia~kVi~~el~~d~----e~il~lV~~aL~~l~~~~~v~I~VnP~D~~~v~~~~~~l~~~~~~~~~---~~I~~D~--~ 170 (223)
T PRK06328 100 ASVKKIIGKELELHP----ETIVSIIANSLKELTQHKRIIIHVNPKDLAIVEKSRPELKKIVEYADS---LIISPKA--D 170 (223)
T ss_pred HHHHHHHHHHHhhCH----HHHHHHHHHHHHhcccCCceEEEECHHHHHHHHHHHHHHHHhccCCCc---eEEEeCC--C
Confidence 777665554 33333 7788999999988866 5799999999999999877765554543222 4555553 4
Q ss_pred CCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHH
Q 041442 172 LPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEI 220 (230)
Q Consensus 172 L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I 220 (230)
|+ .|||+|.+..|. ||.|+++||+.+...+...+
T Consensus 171 L~-------------~GgCiIET~~G~--VDasle~ql~~l~~al~~~l 204 (223)
T PRK06328 171 VT-------------PGGCIIETEAGI--INAQLDVQLAALEKAFSTIL 204 (223)
T ss_pred CC-------------CCCeEEEeCCce--EEecHHHHHHHHHHHHHHHH
Confidence 43 499999999998 49999999988877665444
No 14
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=99.23 E-value=6.2e-09 Score=83.94 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 041442 13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQ-AQDDAVNA 91 (230)
Q Consensus 13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~-ar~~~i~~ 91 (230)
-...|+.+|+.+|+.|...|+++++..+..-.+.+..+...+....... .. ..+...+. ....++ .
T Consensus 14 ~A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~-----------~~-~~~~~~~~~~e~~l~-~ 80 (166)
T TIGR02499 14 QAQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAE-----------WQ-QEAEQLEASLEERLA-E 80 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH-HHHHHHHHHHHHHHH-H
Confidence 5678999999999999999999997665555444444433333322111 11 11111111 223333 3
Q ss_pred HHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcC-CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecCcc
Q 041442 92 MKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNE-KAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKV 170 (230)
Q Consensus 92 v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~-~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~~~ 170 (230)
+...+.+++..-. ..+.++..++.+++..+.+ +.++|+|+|.|.+.+...+.... ...+ ++|..|+
T Consensus 81 l~~~~~~kil~~~----~~~e~l~~lv~~al~~~~~~~~v~I~v~P~d~~~l~~~l~~~~----~~~~---~~i~~D~-- 147 (166)
T TIGR02499 81 LVLQALEQILGEY----DEPERLVRLLRQLLRAVANQGRLTLRVHPEQLDEVREALAERL----ALEP---WELEPDA-- 147 (166)
T ss_pred HHHHHHHHHhCCC----CCHHHHHHHHHHHHHhCCCCCceEEEECHHHHHHHHHHHHHHh----ccCC---eEEeeCC--
Confidence 3333334443322 2457888888888887776 68999999999999998876432 1111 2344442
Q ss_pred CCCCCCCCCCCCCCCCccceEEEecCCcEE
Q 041442 171 FLPPPPKSADSHEPSCSGGVVVASQDGKIV 200 (230)
Q Consensus 171 ~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~ 200 (230)
. -..|||+|.+.+|.|.
T Consensus 148 ~-------------l~~G~c~vet~~G~vd 164 (166)
T TIGR02499 148 S-------------LAPGACVLETESGVVD 164 (166)
T ss_pred C-------------CCCCCEEEEeCCceee
Confidence 2 3569999999999874
No 15
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=5.8e-08 Score=83.02 Aligned_cols=188 Identities=15% Similarity=0.160 Sum_probs=119.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 2 NDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKF 81 (230)
Q Consensus 2 ~~~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~ 81 (230)
.+++..+.+......+...+++.++.|...+++-++. -++.+.+.-..+.....+ ........++.+.+.. ..+
T Consensus 38 ~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~e~~ee----g~q~G~~eG~~~g~~~~~-~~e~~~~li~~~~~~~-~~~ 111 (234)
T COG1317 38 EEEELEQALEAKEEELESAAQELQEGIEEGAREGYEE----GFQLGYEEGFEEGQEEGR-VLERLAKLIAEFQAEL-EAL 111 (234)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHH
Confidence 3456778888888899999999999999888888743 223333222221110000 0000001111221111 111
Q ss_pred H-HHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcC-C-cEEEEeccccHHHHHHHHHHHHHHHHHhhC
Q 041442 82 L-QAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNE-K-AVLLRCREMDRKLVESIVEEAKKEFAEKTK 158 (230)
Q Consensus 82 L-~ar~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~-~-~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g 158 (230)
. .....+++-++.-+++=|...... -+..|..++.+++..+.. + .++|+|+|.|.+++...+++.. ..++
T Consensus 112 ~~~~e~qLv~lvl~ia~~Vi~~~~~~---~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~d~e~i~~~~~~~~----~~~~ 184 (234)
T COG1317 112 KEVVEKQLVQLVLEIARKVIGKELEL---DPEALLAAVREALEEVPLFAAAITLRVNPDDLEIIRQQLDEEL----SLLG 184 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhc---CHHHHHHHHHHHHHhccccccCeEEEECHHHHHHHHHHHHHHH----hhcc
Confidence 1 245667777777776666665443 358889999999987765 3 7999999999999999887443 3334
Q ss_pred CCCCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHH
Q 041442 159 RQAPKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEI 220 (230)
Q Consensus 159 ~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I 220 (230)
+. +.|..| ..| .-|||++++..|.| |-|+++||+.+.+.+.+..
T Consensus 185 ~~-l~l~~D--~~l-------------~~GgC~IeTe~G~i--Dasld~ql~~L~~~~~~~~ 228 (234)
T COG1317 185 WR-LELVAD--PAL-------------SPGGCIIETEFGII--DASLDTQLAALKRALLESL 228 (234)
T ss_pred hh-eeeccC--CCC-------------CCCCeEEEecCccc--cccHHHHHHHHHHHHHhhh
Confidence 32 224334 233 35999999998985 9999999999888877654
No 16
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=98.91 E-value=1.3e-06 Score=75.23 Aligned_cols=170 Identities=15% Similarity=0.198 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAM 92 (230)
Q Consensus 13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v 92 (230)
-....+.+|+.++.+|..+|..+++.++..++.+....+.....+...+++.++... +-..+.++.+-+
T Consensus 61 e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a-----------~~~l~~ei~~la 129 (246)
T TIGR03321 61 EYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAAL-----------SDELRRRTGAEV 129 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 445567788888888888888888877777776666555444443333333332222 223344444555
Q ss_pred HHHHHHHHhhhccChhhHHHHHHHHHHH--------------HHHhhcCCcEEEE-eccccHHHHHHHHHHHHHHHHHhh
Q 041442 93 KEAASKELLNVSNDKNKYRTVLKGLIVQ--------------SMLRLNEKAVLLR-CREMDRKLVESIVEEAKKEFAEKT 157 (230)
Q Consensus 93 ~~~a~ekL~~l~~~~~~Y~~~L~~Li~e--------------a~~~l~~~~~~v~-~~~~D~~~v~~~~~~~~~~~~~~~ 157 (230)
+..|..-|...... +....++...|.+ ++.. ++..++|+ ..|=+.+....+.. .+...+
T Consensus 130 ~~~A~kil~~~~d~-~~~~~lid~~i~~l~~l~~~~~~~l~~~~~~-~~~~~~v~sa~~l~~~~~~~i~~----~l~~~~ 203 (246)
T TIGR03321 130 FAIARKVLTDLADT-DLEERMVDVFVQRLRTLDPDEKAALAEALAD-SGNPVLVRSAFELPEEQREQIRD----TIRETL 203 (246)
T ss_pred HHHHHHHHHHhcCh-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHhC-CCCceEEEecCCCCHHHHHHHHH----HHHHHH
Confidence 55554444443222 1333444444321 1111 12234444 23333333333333 333344
Q ss_pred CCCCCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhc
Q 041442 158 KRQAPKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQN 216 (230)
Q Consensus 158 g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~ 216 (230)
|.. +.+++.. +++.+|||+|.. |+.++|+|+.++|+.+...+
T Consensus 204 ~~~-v~~~~~v--------------dp~ligGi~l~~--g~~~id~Si~~~L~~l~~~~ 245 (246)
T TIGR03321 204 GPE-IRLRFQT--------------EPDLIGGIELTA--GGHKLAWSVDDYLESLEEDV 245 (246)
T ss_pred CCC-eeEEeee--------------CchhcCceEEEE--CCEEEechHHHHHHHHHhhc
Confidence 432 3333321 138999999998 99999999999998877653
No 17
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=98.87 E-value=1e-06 Score=73.23 Aligned_cols=152 Identities=20% Similarity=0.313 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAM 92 (230)
Q Consensus 13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v 92 (230)
-...|+++|+.+|+.|+..|+++++ .+.+.....+...+-..... .+... ...+..+...-......+
T Consensus 31 ~a~~IL~~A~~qA~~Il~~Ae~eAe----~l~~~a~e~a~~~~~q~a~~-------ll~~~-~~~~e~l~~~l~~~~~~l 98 (191)
T PF06188_consen 31 QAREILEDARQQAEQILQQAEEEAE----ALLEQAYEQAEAQFWQQANA-------LLQEW-QQQREQLLQQLEEQAEEL 98 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999996 33333333333333221110 11111 123445555556777888
Q ss_pred HHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecCccCC
Q 041442 93 KEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFL 172 (230)
Q Consensus 93 ~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~~~~L 172 (230)
+..+.++|..-..++..+..++..|+... .+...++++|+|.+.+-|..++.+ +. ..+ +++.-| .+|
T Consensus 99 l~~al~~lL~e~~~~qrv~aLlr~l~~~~---~~~~~~tL~~hP~~~~~V~~~L~~----~~-~~~---w~l~~D--~sl 165 (191)
T PF06188_consen 99 LSQALERLLDETPDQQRVAALLRQLLASQ---RQESEATLRCHPDQLEEVAAWLAE----HP-ALH---WQLQAD--ESL 165 (191)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhc---ccccceEEEECHHHHHHHHHHHHh----CC-Ccc---eeeccC--CCC
Confidence 88888888665444557888887776554 345789999999999999998863 22 111 345555 455
Q ss_pred CCCCCCCCCCCCCCccceEEEecCCcEEEe
Q 041442 173 PPPPKSADSHEPSCSGGVVVASQDGKIVLE 202 (230)
Q Consensus 173 ~~~~~~~~~~~~~~~GGvvl~~~dg~i~vd 202 (230)
++ |..++.+..|.+.+|
T Consensus 166 ~~-------------~~l~L~t~~G~~~l~ 182 (191)
T PF06188_consen 166 AP-------------DQLKLETANGEFRLD 182 (191)
T ss_pred CC-------------CceEEEcCCCcEEEC
Confidence 53 889999999997665
No 18
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=98.84 E-value=4.9e-07 Score=77.44 Aligned_cols=104 Identities=10% Similarity=0.183 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHhh-hccChhhHHHHHHHHHHHHHHhhcC--CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCC
Q 041442 84 AQDDAVNAMKEAASKELLN-VSNDKNKYRTVLKGLIVQSMLRLNE--KAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQ 160 (230)
Q Consensus 84 ar~~~i~~v~~~a~ekL~~-l~~~~~~Y~~~L~~Li~ea~~~l~~--~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~ 160 (230)
.+..+++-++.-|+.=+.. +..+| ..+..++.+++..++. +.++|+|+|.|.+++...+++. ..
T Consensus 120 ~~~~ll~La~~iA~~vi~~el~~~p----~~il~~v~eaL~~lp~~~~~v~I~vnP~D~~~l~~~~~e~------~~--- 186 (236)
T PRK13386 120 QRDELLDLVEKVTRQVIRCELTLQP----QQILALVEETLAALPDDPEQLKVHLNPEEFGRLKDLAPEK------VQ--- 186 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHhccccCCCeEEEECHHHHHHHHHhhhcc------cc---
Confidence 3455666666666555544 34443 6777999999999865 5899999999999998766431 11
Q ss_pred CCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcH
Q 041442 161 APKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNL 217 (230)
Q Consensus 161 ~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~ 217 (230)
.++|..|+ .|. .|||+|.+..|. ||.|+++||+.+.+.+.
T Consensus 187 ~~~l~~D~--~l~-------------~GgC~Iet~~g~--iDa~ietRl~~~~~~l~ 226 (236)
T PRK13386 187 AWGLVADP--SLS-------------AGECRIVTDTSE--ADAGCEHRLDACMDAVK 226 (236)
T ss_pred CeEEEeCC--CcC-------------CCCEEEEeCCce--EeeCHHHHHHHHHHHHH
Confidence 14566663 333 599999998887 59999999977655443
No 19
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE. Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].
Probab=98.75 E-value=6.1e-07 Score=68.92 Aligned_cols=100 Identities=18% Similarity=0.299 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHhh-hccChhhHHHHHHHHHHHHH-HhhcC-CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCC
Q 041442 84 AQDDAVNAMKEAASKELLN-VSNDKNKYRTVLKGLIVQSM-LRLNE-KAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQ 160 (230)
Q Consensus 84 ar~~~i~~v~~~a~ekL~~-l~~~~~~Y~~~L~~Li~ea~-~~l~~-~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~ 160 (230)
.++++++-++.-|..=+.. +..+ +..+..+|.+++ ..+.+ +.++|+|+|.|.+.+...+...... .|
T Consensus 25 ~~~~l~~l~~~iae~vi~~~l~~~----~~~i~~~i~~al~~~~~~~~~v~I~v~p~d~~~l~~~~~~~~~~----~~-- 94 (128)
T PF02108_consen 25 LEQELVELALAIAEKVIGRELEED----PEAILNLIREALQELPRDEEKVTIRVHPDDYEALEELLEDELPE----LG-- 94 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHhhccCCCeEEEECHHHHHHHHHHHHHHHhh----cC--
Confidence 5566666666666555543 3333 367778888888 44444 5799999999999999887633221 12
Q ss_pred CCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHH
Q 041442 161 APKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNV 211 (230)
Q Consensus 161 ~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~ 211 (230)
+++..|+ .|+ .|||+|.+++|. +|.|+++||+.
T Consensus 95 -~~l~~D~--~l~-------------~G~c~iet~~g~--iD~~i~~ql~~ 127 (128)
T PF02108_consen 95 -WELVADP--SLA-------------PGDCRIETEDGI--IDASIETQLEA 127 (128)
T ss_pred -CEEEecC--CCC-------------CCCEEEEECCee--EEeCHHHHHhc
Confidence 3566663 443 499999998887 59999999964
No 20
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=98.70 E-value=3e-06 Score=72.91 Aligned_cols=107 Identities=21% Similarity=0.274 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHhhh-ccChhhHHHHHHHHHHHHHHhhc--CCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCC
Q 041442 84 AQDDAVNAMKEAASKELLNV-SNDKNKYRTVLKGLIVQSMLRLN--EKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQ 160 (230)
Q Consensus 84 ar~~~i~~v~~~a~ekL~~l-~~~~~~Y~~~L~~Li~ea~~~l~--~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~ 160 (230)
....+++-++.-|+.=+... ..+ ...+..+|.+++..+. .+.++|+|+|.|..+++..+.. .+. ..|
T Consensus 133 ie~~Lv~Lal~ia~~vi~~el~~~----~~~il~~v~~al~~lp~~~~~v~i~v~P~D~~~v~~~~~~---~~~-~~~-- 202 (246)
T PRK05687 133 IESRLVQLALELARQVIGQELKTD----PSAILAAIRELLQALPMFSGKPQLRVNPDDLELVEQLLGA---ELS-LHG-- 202 (246)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccC----HHHHHHHHHHHHHhccccCCCceEEECHHHHHHHHHHHhh---HHH-hCC--
Confidence 45566666666666555543 333 3678889999999875 3689999999999999987752 221 222
Q ss_pred CCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHH
Q 041442 161 APKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLP 218 (230)
Q Consensus 161 ~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p 218 (230)
+.|..|+ .|+ .|||+|.+.+|. ||.|+++||+.+.+.+.+
T Consensus 203 -~~l~~D~--~l~-------------~Ggc~iet~~g~--vDa~l~~r~~~l~~~l~~ 242 (246)
T PRK05687 203 -WRLLADP--SLH-------------RGGCRISAEEGD--VDASLETRWQEVCRLLAP 242 (246)
T ss_pred -eEEEeCC--CcC-------------CCCeEEEeCCCc--eeccHHHHHHHHHHHHhc
Confidence 4566664 343 599999999888 599999999998887654
No 21
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=98.48 E-value=6.5e-05 Score=62.49 Aligned_cols=167 Identities=19% Similarity=0.225 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 15 RFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKE 94 (230)
Q Consensus 15 ~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v~~ 94 (230)
..++..|+..|..|...|+..|+.++..=.++....-.. ++.+.+ +.+.-+..+.+-...+.+.+=+++
T Consensus 33 ~~~~aAA~~~A~~ir~~Ar~ayE~~rarGyeeG~~~g~e---------~~A~ll--aqa~a~v~r~~a~LE~~l~~LVl~ 101 (207)
T PF06635_consen 33 AAFLAAARREAQRIREWARAAYERERARGYEEGRRAGAE---------QAARLL--AQATAEVARYLAGLEQELAELVLE 101 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999975554433332221111 111112 233233333344445777777777
Q ss_pred HHHHHHhhhccChhhHHHHHHHHHHHHHHhhcC-CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecCccCCC
Q 041442 95 AASKELLNVSNDKNKYRTVLKGLIVQSMLRLNE-KAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLP 173 (230)
Q Consensus 95 ~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~-~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~~~~L~ 173 (230)
-+++=|-.|+.+ ++|.+.+.+++..+.. ..++|+|.|.|.+.+...+..+ .+..|. .++.|..+.-|+
T Consensus 102 ~Vr~ILg~fd~~-----ell~r~vr~Al~~~~~~~~v~l~V~P~~vd~l~~~la~~----~~~~g~--~~i~I~aDp~La 170 (207)
T PF06635_consen 102 IVRKILGEFDPD-----ELLVRAVRQALSQIRQGAEVTLRVAPADVDMLRRELAAL----EGRPGR--PKIRIVADPRLA 170 (207)
T ss_pred HHHHHHhcCChH-----HHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHhh----hccCCC--CceeeecCCCCC
Confidence 777777777654 7888888888887766 4799999999999998877544 222233 245555444555
Q ss_pred CCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHH
Q 041442 174 PPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLP 218 (230)
Q Consensus 174 ~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p 218 (230)
.|.+||.|+-|.| |-+|++-|+.++.-+.|
T Consensus 171 -------------~~~Cvlese~G~V--dagL~aQL~ALr~a~~~ 200 (207)
T PF06635_consen 171 -------------AGQCVLESEFGVV--DAGLDAQLRALRLAFGP 200 (207)
T ss_pred -------------CCCeeeecccchh--hccHHHHHHHHHHHhcc
Confidence 4999999999994 99999999888877765
No 22
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=98.40 E-value=0.00012 Score=61.09 Aligned_cols=110 Identities=10% Similarity=0.050 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh-ccChhhHHHHHHHHHHHHHHhhcC-CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCC
Q 041442 84 AQDDAVNAMKEAASKELLNV-SNDKNKYRTVLKGLIVQSMLRLNE-KAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQA 161 (230)
Q Consensus 84 ar~~~i~~v~~~a~ekL~~l-~~~~~~Y~~~L~~Li~ea~~~l~~-~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~ 161 (230)
.+.++++=++.-++.=+... ..++ ...+..++.+++..+.+ +.++|+|+|.|.+.+...+.+..... |..
T Consensus 85 ~~~~lv~La~~iarkvi~~~l~~~p---~a~v~~~v~eal~~l~~~~~v~I~v~P~d~~~l~~~l~~~~~~~----~~~- 156 (199)
T PRK06032 85 METEAADLALAVARKIAGAALAAEP---LAEITAAVRDCLRHLVATPHLVVRVNDALVEAARERLERLARES----GFE- 156 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhcCCCcEEEEECHHHHHHHHHHHHHHHHhc----CcC-
Confidence 34455554455444444333 3332 23577888888887766 56999999999999998887554333 221
Q ss_pred CeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhc
Q 041442 162 PKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQN 216 (230)
Q Consensus 162 ~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~ 216 (230)
+.+.+-.+..|+ .||++|...+|.+ |+|+.+++..+.+-+
T Consensus 157 ~~~~l~~D~~L~-------------~G~c~vet~~G~v--d~d~~~~~~~I~~al 196 (199)
T PRK06032 157 GRLVVLADPDMA-------------PGDCRLEWADGGV--VRDRAAIEARIEEAV 196 (199)
T ss_pred ccEEEeeCCCCC-------------CCCeEEEeCCCeE--ecCHHHHHHHHHHHh
Confidence 345554444554 4999999999985 888888887776544
No 23
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=98.20 E-value=5.7e-05 Score=61.39 Aligned_cols=92 Identities=18% Similarity=0.147 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDA 88 (230)
Q Consensus 9 ~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~ 88 (230)
.+..-...++.+|+.++.+|..+|..+++..+..++++.+..... ......+.+..+.++.+...|+++
T Consensus 74 ~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~-----------~~~~a~~~ie~Ek~~a~~elk~ei 142 (167)
T PRK08475 74 EKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIEN-----------LIKSFEELMEFEVRKMEREVVEEV 142 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778889999999999999999876666655444333222 222344666677778889999999
Q ss_pred HHHHHHHHHHHHhhhccChhhHHHHHHH
Q 041442 89 VNAMKEAASKELLNVSNDKNKYRTVLKG 116 (230)
Q Consensus 89 i~~v~~~a~ekL~~l~~~~~~Y~~~L~~ 116 (230)
++++|+. +|.+++.+ .|.+++.+
T Consensus 143 i~~~~~~---~~~~l~~~--~y~~~~~~ 165 (167)
T PRK08475 143 LNELFES---KKVSLNQQ--EYVNILLK 165 (167)
T ss_pred HHHHHHh---hhcCCCHH--HHHHHHhc
Confidence 9999999 99999876 69998864
No 24
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=97.98 E-value=0.0066 Score=52.52 Aligned_cols=165 Identities=14% Similarity=0.155 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 15 RFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKE 94 (230)
Q Consensus 15 ~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v~~ 94 (230)
..-+.+|+.++.+|..+|..+++.++..++.+.+..+.....+...+++.++ ....-..+.++.+-++.
T Consensus 63 e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek-----------~~a~~~L~~~v~~la~~ 131 (250)
T PRK14474 63 RQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREK-----------QEFFKALQQQTGQQMVK 131 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 3446677888888888888888777777666555544443333332322222 22233345666666777
Q ss_pred HHHHHHhhhccChhhHHHHHHHHHHHH----------HH--hhcCCcEEEEe----ccccHHHHHHHHHHHHHHHHH-hh
Q 041442 95 AASKELLNVSNDKNKYRTVLKGLIVQS----------ML--RLNEKAVLLRC----REMDRKLVESIVEEAKKEFAE-KT 157 (230)
Q Consensus 95 ~a~ekL~~l~~~~~~Y~~~L~~Li~ea----------~~--~l~~~~~~v~~----~~~D~~~v~~~~~~~~~~~~~-~~ 157 (230)
-|..-|....... ....++..+|.+- +. .-++..++|+. .|.+...+...+. . ..
T Consensus 132 ~A~kiL~~~~d~~-~~~~lid~~i~~l~~l~~~~r~~l~~~~~~~~~~~i~ta~~l~~~~~~~~~~~l~-------~~~~ 203 (250)
T PRK14474 132 IIRAALADLANAT-LEQQIVGIFIARLEHLSEAERQALANSNTTPEMLRIRTSFELSQDLRAQILESLH-------QTHL 203 (250)
T ss_pred HHHHHHHhhcCHH-HHHHHHHHHHHHhcccCHHHHHHHHhhhcCCCCeEEEeCCCCCHHHHHHHHHHHH-------HHhc
Confidence 7766666654332 4555555555221 11 01223344443 2333444444333 3 33
Q ss_pred CCCCCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhh
Q 041442 158 KRQAPKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQ 215 (230)
Q Consensus 158 g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~ 215 (230)
|.. +.+.+.. + ++.++|+-|.. |+-.|.+||+..|+..-..
T Consensus 204 ~~~-~~~~f~~------~--------p~li~Giel~~--~~~~i~ws~~~yl~~l~~~ 244 (250)
T PRK14474 204 IPG-TDIHFVT------S--------PELICGIELKT--EGYKIAWTLAEYLDALESQ 244 (250)
T ss_pred CCC-Cceeeec------C--------cccccCeEEec--CCceEeccHHHHHHHHHHH
Confidence 332 3444432 1 37899999997 7777899999999766444
No 25
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=96.94 E-value=0.0095 Score=48.86 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=28.1
Q ss_pred CCCccceEEEecCCcEEEeccHHHHHHHHHhhcH
Q 041442 184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQNL 217 (230)
Q Consensus 184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~ 217 (230)
++++|||++.. |..++|.|+.++|+.+...+.
T Consensus 147 pslIGGi~i~~--gd~viD~Sik~~L~~l~~~l~ 178 (179)
T PRK13436 147 PKLIAGIKIKV--DNKVFENSIKSKLKELKKQVL 178 (179)
T ss_pred HHHcCceEEEE--CCEEeehhHHHHHHHHHHHHh
Confidence 48999999997 889999999999998877653
No 26
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=96.86 E-value=0.11 Score=43.00 Aligned_cols=171 Identities=16% Similarity=0.200 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Q 041442 4 ADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIE--------YSMQLN 75 (230)
Q Consensus 4 ~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~--------~S~~~~ 75 (230)
+++.++.+.-.+.|+.+|+.+|++|..+|.++++.+...++......+..+..+....+..+.+.. ++.+..
T Consensus 9 ~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~ 88 (198)
T PRK03963 9 QEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLE 88 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888899999999999999999999999888888877766665554444333333322222 233333
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHhh----hccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHH
Q 041442 76 AARIKFLQ----AQDDAVNAMKEAASKELLN----VSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVE 147 (230)
Q Consensus 76 ~~R~~~L~----ar~~~i~~v~~~a~ekL~~----l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~ 147 (230)
.++.++.+ .-..++..++.++...|.. +..++.+. .++..++.+....++ .+.+.+.+. .. +
T Consensus 89 ~a~~~l~~~~~~~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~-~~~~~~~~~~~~~~~--~~~i~~~~~-~~----~-- 158 (198)
T PRK03963 89 AVRERLAELPEDEYFETLKALTKEAVEELGEDKVVVRSNERTL-KLIDSRLEEIRDELG--DVEIELGEP-IE----T-- 158 (198)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCCcEEEEEccccH-HHHHHHHHHHHHHhC--CeEEEECCC-CC----c--
Confidence 34433333 1334555666666555532 22222122 455555544444333 445555421 00 0
Q ss_pred HHHHHHHHhhCCCCCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHH
Q 041442 148 EAKKEFAEKTKRQAPKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPE 219 (230)
Q Consensus 148 ~~~~~~~~~~g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~ 219 (230)
. |.+.+. +..|||++-+ + ++.-|+...+.+...+...
T Consensus 159 --------~-----GGvil~-----------------s~~g~i~~dn---T--~e~~l~~~~~~~~~~i~~~ 195 (198)
T PRK03963 159 --------I-----GGVIVE-----------------TKDGTIRVDN---T--FEARMERLESELRAKIAKA 195 (198)
T ss_pred --------c-----ceEEEE-----------------eCCCCEEEeC---c--HHHHHHHHHHHhHHHHHHH
Confidence 1 234443 2248887764 3 5778888877777665443
No 27
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=96.76 E-value=0.11 Score=38.93 Aligned_cols=76 Identities=17% Similarity=0.140 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQ 85 (230)
Q Consensus 10 i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar 85 (230)
-+.--..++.+|+.++.+|+..|..+++..+..++.+.......-.++...+++..+...++.+..+...-.+.++
T Consensus 11 aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~a~ 86 (103)
T PRK08404 11 AEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAE 86 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788888888888888888887777777666655555444445555555555555555555444444443
No 28
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=96.64 E-value=0.33 Score=40.80 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 5 DVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEAR 65 (230)
Q Consensus 5 ~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~ 65 (230)
+.-...+.-...|+.+|+.+|++|+.+|+.+++ +++.....++..+..+....+++.
T Consensus 20 eiL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe----~ii~~A~~eae~ek~r~~s~a~l~ 76 (207)
T PRK01005 20 ETLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAE----KIIRSAEETADQKLKQGESALVQA 76 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777889999999999999999998874 455555555555544443333333
No 29
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=96.60 E-value=0.054 Score=47.40 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=27.9
Q ss_pred CCCccceEEEecCCcEEEeccHHHHHHHHHhhc
Q 041442 184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQN 216 (230)
Q Consensus 184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~ 216 (230)
++++|||+|.- |..++|+|+.++|+.+...+
T Consensus 239 psLIGGivI~v--Gd~viD~Sv~~rL~~L~~~L 269 (271)
T PRK13430 239 PSVLGGMRVQV--GDEVIDGSVAGRLERLRRRL 269 (271)
T ss_pred ccccCcEEEEE--CCEEEehhHHHHHHHHHHHh
Confidence 48999999998 99999999999999887765
No 30
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=96.50 E-value=0.04 Score=51.53 Aligned_cols=31 Identities=39% Similarity=0.545 Sum_probs=27.9
Q ss_pred CCCccceEEEecCCcEEEeccHHHHHHHHHhhc
Q 041442 184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQN 216 (230)
Q Consensus 184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~ 216 (230)
++++|||+|.- |..++|.|+.+||+.+...+
T Consensus 413 psLiGGivI~v--Gd~viD~Sv~~rL~~l~~~l 443 (445)
T PRK13428 413 PELLGGLSIAV--GDEVIDGTLSSRLAAAEAQL 443 (445)
T ss_pred chhhCceEEEE--CCEEeehhHHHHHHHHHhhC
Confidence 48999999997 99999999999999887654
No 31
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=96.46 E-value=0.33 Score=39.42 Aligned_cols=95 Identities=9% Similarity=0.090 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 14 VRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMK 93 (230)
Q Consensus 14 ~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v~ 93 (230)
....+.+|+.++.+|..+|..+++..+..++......+.....+.... ...+....+-..+.++++.++
T Consensus 76 ~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~-----------i~~e~~~a~~~l~~qi~~la~ 144 (174)
T PRK07352 76 AQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAAD-----------LSAEQERVIAQLRREAAELAI 144 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 445578888888888888888887666665544433333322222212 222222333445677788888
Q ss_pred HHHHHHHhhhccChhhHHHHHHHHHHH
Q 041442 94 EAASKELLNVSNDKNKYRTVLKGLIVQ 120 (230)
Q Consensus 94 ~~a~ekL~~l~~~~~~Y~~~L~~Li~e 120 (230)
..|...|..-..++ ....++.++|.+
T Consensus 145 ~~A~kil~~~l~~~-~~~~li~~~i~~ 170 (174)
T PRK07352 145 AKAESQLPGRLDED-AQQRLIDRSIAN 170 (174)
T ss_pred HHHHHHHHhHcCHH-HHHHHHHHHHHh
Confidence 88887776644332 455555555543
No 32
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=96.42 E-value=0.17 Score=41.77 Aligned_cols=61 Identities=10% Similarity=0.126 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 4 ADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEA 64 (230)
Q Consensus 4 ~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~ 64 (230)
.++.+..+.-.+.|+.+|+.+|++|..+|+++++..+..+..+....+....++....+.+
T Consensus 8 ~~I~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~L 68 (185)
T PRK01194 8 KDIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANI 68 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4667888888999999999999999999999998877777766666555555554444443
No 33
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=96.31 E-value=0.41 Score=40.16 Aligned_cols=97 Identities=15% Similarity=0.067 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNA 91 (230)
Q Consensus 12 ~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~ 91 (230)
.-.+..+++|+.+|.+|...|.++++..+..++.+....+.........++ ..+.+...-..+.++.+-
T Consensus 103 ~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~I-----------e~Ek~~a~~~Lk~ei~~l 171 (205)
T PRK06231 103 ENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEI-----------EKERRELKEQLQKESVEL 171 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 345667778888888888888888876666655443333322222221111 122222233445666666
Q ss_pred HHHHHHHHHhhhccChhhHHHHHHHHHHH
Q 041442 92 MKEAASKELLNVSNDKNKYRTVLKGLIVQ 120 (230)
Q Consensus 92 v~~~a~ekL~~l~~~~~~Y~~~L~~Li~e 120 (230)
+..-|..-|.+-.. +.....++.+.|.+
T Consensus 172 Av~iA~kiL~k~ld-~~~~~~lI~~~i~~ 199 (205)
T PRK06231 172 AMLAAEELIKKKVD-REDDDKLVDEFIRE 199 (205)
T ss_pred HHHHHHHHHHhhCC-HHHHHHHHHHHHHH
Confidence 66666666655332 22566666666644
No 34
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=96.29 E-value=0.44 Score=39.10 Aligned_cols=96 Identities=19% Similarity=0.122 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAM 92 (230)
Q Consensus 13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v 92 (230)
-....+++|+.++.+|...|..+++..+..++.+....+.........++ ..+.+...-..+.++.+-+
T Consensus 80 e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~i-----------e~Ek~~a~~~l~~ei~~la 148 (184)
T CHL00019 80 KARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETI-----------RFEQQRAINQVRQQVFQLA 148 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 34567888888889999888888877776666554444333322222222 2222233344567777777
Q ss_pred HHHHHHHHhhhccChhhHHHHHHHHHHH
Q 041442 93 KEAASKELLNVSNDKNKYRTVLKGLIVQ 120 (230)
Q Consensus 93 ~~~a~ekL~~l~~~~~~Y~~~L~~Li~e 120 (230)
+..|..-|.+... ++....++...|.+
T Consensus 149 v~~A~kil~~~ld-~~~~~~lid~~i~~ 175 (184)
T CHL00019 149 LQRALGTLNSCLN-NELHLRTINANIGL 175 (184)
T ss_pred HHHHHHHHHhHcC-HHHHHHHHHHHHHH
Confidence 7877777766542 22455555555544
No 35
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=96.14 E-value=0.56 Score=38.07 Aligned_cols=96 Identities=21% Similarity=0.223 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAM 92 (230)
Q Consensus 13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v 92 (230)
-....+.+|+.++.+|...|..+++..+..++.+....+....+....+++..+ ..-+-..+.++.+-+
T Consensus 72 e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~-----------~~a~~el~~ei~~lA 140 (173)
T PRK13460 72 DYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAK-----------GKALSQLQNQIVEMT 140 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 345667888888888888888888766666554444333322222222222111 112233456666666
Q ss_pred HHHHHHHHhhhccChhhHHHHHHHHHHH
Q 041442 93 KEAASKELLNVSNDKNKYRTVLKGLIVQ 120 (230)
Q Consensus 93 ~~~a~ekL~~l~~~~~~Y~~~L~~Li~e 120 (230)
+.-|..-|.+-.. +.....++...|.+
T Consensus 141 ~~~a~kil~~~l~-~~~~~~lid~~i~~ 167 (173)
T PRK13460 141 ITIASKVLEKQLK-KEDYKAFIETELAK 167 (173)
T ss_pred HHHHHHHHHHHCC-HHHHHHHHHHHHHH
Confidence 7767666655442 22455555555544
No 36
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=96.10 E-value=0.11 Score=42.60 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=28.9
Q ss_pred CCCccceEEEecCCcEEEeccHHHHHHHHHhhcH
Q 041442 184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQNL 217 (230)
Q Consensus 184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~ 217 (230)
++++|||++.- |..++|.|+.++|+.+...+.
T Consensus 143 psLIGG~ii~i--gd~viD~Svk~~L~~l~~~l~ 174 (184)
T PRK13434 143 KNLLGGFVVQF--NDLKIEKSIASQLGEIKKAML 174 (184)
T ss_pred hHHcCceEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence 48999999998 889999999999999888774
No 37
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=96.01 E-value=0.34 Score=40.33 Aligned_cols=34 Identities=35% Similarity=0.351 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 4 ADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 4 ~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~ 37 (230)
.++-.+.+.-.+.|+.+|+++|++|+.+|+++++
T Consensus 14 ~~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe 47 (198)
T PRK01558 14 KDGLEEAERLANEIILEAKEEAEEIIAKAEEEAK 47 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788899999999999999999999985
No 38
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=95.95 E-value=0.48 Score=35.64 Aligned_cols=48 Identities=29% Similarity=0.341 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYE 56 (230)
Q Consensus 9 ~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~ 56 (230)
+...-.+.|..+|+++|.+|+.+|+.++...+..+++.....+..+..
T Consensus 25 eAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~ 72 (108)
T COG2811 25 EAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAE 72 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445667777777788888777777776666666665555544433
No 39
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=95.92 E-value=0.68 Score=37.14 Aligned_cols=99 Identities=13% Similarity=0.140 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAV 89 (230)
Q Consensus 10 i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i 89 (230)
+..-.+..+.+|+.+|.+|+..|..+++..+..++.....+.....+....+++..+ ....-..+.++.
T Consensus 61 ~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek-----------~~a~~~L~~~i~ 129 (164)
T PRK14473 61 AKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQER-----------QRMLSELKSQIA 129 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 344456677888888888888888888766666655544443333222222222221 122233445556
Q ss_pred HHHHHHHHHHHhhhccChhhHHHHHHHHHHH
Q 041442 90 NAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120 (230)
Q Consensus 90 ~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~e 120 (230)
+-++.-|..-|..-. +++.+..++...|.+
T Consensus 130 ~la~~~a~kil~~~l-~~~~~~~li~~~i~~ 159 (164)
T PRK14473 130 DLVTLTASRVLGAEL-QARGHDALIAESLAA 159 (164)
T ss_pred HHHHHHHHHHHHhHc-CHHHHHHHHHHHHHh
Confidence 666666655454322 233466555555543
No 40
>PRK15322 invasion protein OrgB; Provisional
Probab=95.89 E-value=0.86 Score=38.04 Aligned_cols=159 Identities=13% Similarity=0.112 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAM 92 (230)
Q Consensus 13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v 92 (230)
-...+.++|+.+|.+|..+|+.|++.-...-.. .-|..-..++... + ..-+...-..+.++..+|
T Consensus 13 ~a~~l~~qA~~kA~~ii~qA~~eaE~ir~~A~~-------~GYq~Gl~qa~~~--l------a~~~a~~~~l~~~l~~~i 77 (210)
T PRK15322 13 SAERLEQQARRRAKRILRQAEEEAETLRMYAYQ-------EGYEQGMIDALQQ--V------AAYLTDNQTMAWKWMEKI 77 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999998643333222 2233222221111 1 111111122234677777
Q ss_pred HHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcC--CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecCcc
Q 041442 93 KEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNE--KAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKV 170 (230)
Q Consensus 93 ~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~--~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~~~ 170 (230)
-+.++.-|...-.+| ++|-.++.+=+..++. +++.|++.+.-.+...++-. .+.+..+ +++.+..
T Consensus 78 e~~~r~lls~~Ld~p----d~LL~~le~Wl~~l~~~~~pL~l~lP~~ak~~~~~L~~----~l~e~w~---~~~~i~y-- 144 (210)
T PRK15322 78 QIYARELFSAAVDHP----ETLLTVLDEWLRDFDKPEGQLFLTLPVNAKKDHQKLMV----LLMENWP---GTFNLKY-- 144 (210)
T ss_pred HHHHHHHHHHHccCH----HHHHHHHHHHHHhCccccCceeEecChhhhhhHHHHHH----HHHHhcC---CCeEEEE--
Confidence 777777776666666 5666666654443332 56778876655554444433 2233222 3333331
Q ss_pred CCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhh
Q 041442 171 FLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQ 215 (230)
Q Consensus 171 ~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~ 215 (230)
.-.-+||+++ |.-++..+=+.-++.+-..
T Consensus 145 --------------hd~~rFV~~~--g~qIaEFsPq~~v~~a~~~ 173 (210)
T PRK15322 145 --------------HQEQRFIMSC--GDQIAEFSPEQFVETAVGV 173 (210)
T ss_pred --------------cCCCceEEEe--CCchhccCHHHHHHHHHHH
Confidence 1236788887 6666677666666555443
No 41
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=95.85 E-value=0.8 Score=37.52 Aligned_cols=47 Identities=23% Similarity=0.235 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 4 ADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKK 50 (230)
Q Consensus 4 ~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~ 50 (230)
+++.++.+.-++.|+.+|+.++++|..+|+++++..+..........
T Consensus 8 ~~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e 54 (188)
T PRK02292 8 EDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAERE 54 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888999999999999999999999876655554444433
No 42
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=95.67 E-value=0.85 Score=37.24 Aligned_cols=37 Identities=32% Similarity=0.310 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 8 RQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLF 44 (230)
Q Consensus 8 ~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~ 44 (230)
++.+.-++.|+.+|+++++.|..++.+++........
T Consensus 4 ~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~ 40 (198)
T PF01991_consen 4 EEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEII 40 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443333333
No 43
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=95.64 E-value=0.84 Score=42.77 Aligned_cols=96 Identities=13% Similarity=0.040 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 14 VRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMK 93 (230)
Q Consensus 14 ~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v~ 93 (230)
-+.++++|+.++.+|..+|+++++..+..++.+....+.........+++.+++ ..+-..|.++.+-++
T Consensus 58 ~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~-----------~a~~elr~ei~~lAv 126 (445)
T PRK13428 58 HTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRA-----------QLTRQLRLELGHESV 126 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 445778888888888888888887655555544333333222222222222221 122334556666666
Q ss_pred HHHHHHHhhhccChhhHHHHHHHHHHH
Q 041442 94 EAASKELLNVSNDKNKYRTVLKGLIVQ 120 (230)
Q Consensus 94 ~~a~ekL~~l~~~~~~Y~~~L~~Li~e 120 (230)
..|.+-|.+-..++.....++...|.+
T Consensus 127 ~~A~kil~~~l~d~~~~~~lId~~i~~ 153 (445)
T PRK13428 127 RQAGELVRNHVADPAQQSATVDRFLDE 153 (445)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666654222221344555555533
No 44
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=95.55 E-value=0.95 Score=36.10 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAM 92 (230)
Q Consensus 13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v 92 (230)
-....+.+|+.++.+|..+|+.+++..+..++.+..............+++ .+.....-..+.++.+-+
T Consensus 61 e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~-----------~e~~~a~~~l~~ei~~lA 129 (159)
T PRK13461 61 KNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQ-----------REKEKAEYEIKNQAVDLA 129 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 346677788888888888888888766666555444433322222221211 112222333455556666
Q ss_pred HHHHHHHHhhhccChhhHHHHHHHHHH
Q 041442 93 KEAASKELLNVSNDKNKYRTVLKGLIV 119 (230)
Q Consensus 93 ~~~a~ekL~~l~~~~~~Y~~~L~~Li~ 119 (230)
+.-|..-|..... ++....++...|.
T Consensus 130 ~~~a~kil~~~~~-~~~~~~li~~~i~ 155 (159)
T PRK13461 130 VLLSSKALEESID-ESEHRRLIKDFIS 155 (159)
T ss_pred HHHHHHHHHhHcC-HHHHHHHHHHHHh
Confidence 6666555555432 2245555554443
No 45
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=95.36 E-value=0.36 Score=39.39 Aligned_cols=32 Identities=31% Similarity=0.280 Sum_probs=28.3
Q ss_pred CCCccceEEEecCCcEEEeccHHHHHHHHHhhcH
Q 041442 184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQNL 217 (230)
Q Consensus 184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~ 217 (230)
++++||+++.. |.-++|.|+.++|+.+...++
T Consensus 146 ~sliGG~~i~i--g~~~~D~Sik~~L~~l~~~l~ 177 (180)
T PRK13441 146 ESLIAGAVVEF--EGKRLDVTVQGRLKKIAREVL 177 (180)
T ss_pred hHHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHh
Confidence 37899999997 888899999999998887764
No 46
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=95.33 E-value=0.19 Score=41.21 Aligned_cols=31 Identities=23% Similarity=0.485 Sum_probs=27.0
Q ss_pred CCCccceEEEecCCcEEEeccHHHHHHHHHhhc
Q 041442 184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQN 216 (230)
Q Consensus 184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~ 216 (230)
.+.+||+++.. |..++|.|+.++|.++...+
T Consensus 147 ~sliGG~iI~v--gd~viD~Svr~~L~~l~~~l 177 (178)
T COG0712 147 PSLIGGLIIKV--GDEVIDGSVRGKLKRLAKAL 177 (178)
T ss_pred HHHhCceEEEE--CCEEEechHHHHHHHHHHhc
Confidence 48999999998 99999999999998876543
No 47
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=95.19 E-value=0.77 Score=32.86 Aligned_cols=32 Identities=22% Similarity=0.123 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKMQ 42 (230)
Q Consensus 11 ~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~ 42 (230)
+.-...++.+|+.++.+|+..|..+++.....
T Consensus 8 e~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~ 39 (85)
T TIGR02926 8 EEDAEELIEEAEEERKQRIAEAREEARELLEE 39 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777777777777777776543333
No 48
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=95.18 E-value=1.4 Score=35.80 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 14 VRFIRQEAEEKANEISVSAEEEFNIEKMQLFEA 46 (230)
Q Consensus 14 ~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~ 46 (230)
-+..+.+|+.++.+|...|+++++..+..++.+
T Consensus 75 ~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~ 107 (175)
T PRK14472 75 NRELLAKADAEADKIIREGKEYAEKLRAEITEK 107 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777776555444433
No 49
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=95.01 E-value=1.4 Score=34.87 Aligned_cols=96 Identities=14% Similarity=0.032 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVN 90 (230)
Q Consensus 11 ~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~ 90 (230)
..-....+.+|+.++.+|...|..+++..+..++......+....+....+++ .+.....-..+..+.+
T Consensus 58 ~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~-----------~e~~~a~~~l~~~~~~ 126 (156)
T PRK05759 58 QAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIE-----------QERKRAREELRKQVAD 126 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 33456677788888888888888888665555554433333222222211111 1122223344566666
Q ss_pred HHHHHHHHHHhhhccChhhHHHHHHHHH
Q 041442 91 AMKEAASKELLNVSNDKNKYRTVLKGLI 118 (230)
Q Consensus 91 ~v~~~a~ekL~~l~~~~~~Y~~~L~~Li 118 (230)
-++..|..-|..... +.....++...|
T Consensus 127 lA~~~a~k~l~~~~d-~~~~~~~i~~~i 153 (156)
T PRK05759 127 LAVAGAEKILGRELD-AAAQSDLIDKLI 153 (156)
T ss_pred HHHHHHHHHHHhHcC-HHHHHHHHHHHH
Confidence 666666666655432 223445554444
No 50
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=94.93 E-value=1.6 Score=35.05 Aligned_cols=34 Identities=18% Similarity=-0.027 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLF 44 (230)
Q Consensus 11 ~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~ 44 (230)
..-.+..+.+|+.++.+|...|+++++..+..++
T Consensus 62 ~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~ 95 (164)
T PRK14471 62 QADNERLLKEARAERDAILKEAREIKEKMIADAK 95 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777888888888888777754444433
No 51
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=94.71 E-value=1.6 Score=34.16 Aligned_cols=35 Identities=20% Similarity=0.120 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEA 46 (230)
Q Consensus 12 ~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~ 46 (230)
.-....+.+|+.++.+|...|..+++..+..++.+
T Consensus 50 ~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~ 84 (147)
T TIGR01144 50 KKAQVILKEAKDEAQEIIENANKRGSEILEEAKAE 84 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777888888888888888876555554443
No 52
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=94.59 E-value=2.1 Score=35.00 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041442 17 IRQEAEEKANEISVSAEEEFNIE 39 (230)
Q Consensus 17 I~~eA~eka~eI~~~A~ee~~~e 39 (230)
-+.+|+.++.+|+..|..+++..
T Consensus 87 ~L~~A~~ea~~Ii~~A~~~a~~~ 109 (184)
T PRK13455 87 KQREVQEQADRIVAAAKDEAQAA 109 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665433
No 53
>PRK00106 hypothetical protein; Provisional
Probab=94.46 E-value=3.6 Score=39.52 Aligned_cols=23 Identities=30% Similarity=0.331 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041442 15 RFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 15 ~~I~~eA~eka~eI~~~A~ee~~ 37 (230)
..|+.+|+.+|++|..+|+.+++
T Consensus 45 ~~IleeAe~eAe~I~keA~~EAk 67 (535)
T PRK00106 45 VNLRGKAERDAEHIKKTAKRESK 67 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666553
No 54
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=94.40 E-value=2.3 Score=34.55 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 14 VRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEK 48 (230)
Q Consensus 14 ~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~ 48 (230)
-+..+.+|+.++.+|..+|+.+++..+..++.+..
T Consensus 75 ~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~ 109 (173)
T PRK13453 75 NKQKLKETQEEVQKILEDAKVQARQQQEQIIHEAN 109 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777655555544433
No 55
>PRK05758 F0F1 ATP synthase subunit delta; Validated
Probab=94.03 E-value=1.2 Score=36.05 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=26.9
Q ss_pred CCCccceEEEecCCcEEEeccHHHHHHHHHhhc
Q 041442 184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQN 216 (230)
Q Consensus 184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~ 216 (230)
++.+||+++.. |...+|+|+.++|+.....+
T Consensus 145 ~~ligG~~i~~--~~~~~d~Si~~~L~~l~~~l 175 (177)
T PRK05758 145 PSLIGGVIIKV--GDRVIDGSVRGKLERLKDAL 175 (177)
T ss_pred hHHhCceEEEE--CCEEeehhHHHHHHHHHHHh
Confidence 37899999998 77889999999998887665
No 56
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=93.92 E-value=3.4 Score=34.74 Aligned_cols=122 Identities=17% Similarity=0.177 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAM 92 (230)
Q Consensus 13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v 92 (230)
-..-|++.|..||.+|...|..+-..-+... +.+.++++.....+ +-...++..-.-|-.-.++...+
T Consensus 42 ~s~~il~~A~rkA~~I~q~A~~~~~~ll~qa-qqqad~L~~~~~~~-----------~E~~~L~qHV~wLve~e~lE~sL 109 (224)
T PRK15354 42 VSHAIVSSAYRKAEKIIRDAYRYQREQKVEQ-QQELACLRKNTLEK-----------MEVEWLEQHVKHLQEDENQFRSL 109 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhHHHHHHH
Confidence 3457899999999999998887753222211 11112222211111 01111122222233333333334
Q ss_pred HHHHHHHHhhh--------ccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHH
Q 041442 93 KEAASKELLNV--------SNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIV 146 (230)
Q Consensus 93 ~~~a~ekL~~l--------~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~ 146 (230)
...++++|..- ....+--.-+...|-.+......++.++++|.|...+.+...+
T Consensus 110 V~~~~~~I~~aI~~VltaW~gQQ~isq~Li~RLa~Qv~~mA~eg~LtL~VHP~~~~am~~af 171 (224)
T PRK15354 110 VDHAAHHIKNSIEQVLLAWFDQQSVDSVMCHRLARQATAMAEEGALYLRIHPEKEALMRETF 171 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCceEEEECHHHHHHHHHHH
Confidence 44444443331 1111122345566667777777778999999999998776543
No 57
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=93.89 E-value=3.1 Score=34.90 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQ 42 (230)
Q Consensus 13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~ 42 (230)
-.+..+.+|+.++.+|...|+.+++.+...
T Consensus 109 ~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~ 138 (204)
T PRK09174 109 AYEQELAQARAKAHSIAQAAREAAKAKAEA 138 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777666443333
No 58
>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit. This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.
Probab=93.74 E-value=1.7 Score=35.14 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=25.8
Q ss_pred CCCccceEEEecCCcEEEeccHHHHHHHHHhh
Q 041442 184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQ 215 (230)
Q Consensus 184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~ 215 (230)
++.+||+++.. |...+|.|+.++|+.+...
T Consensus 142 ~~ligGi~i~~--~~~~iD~Si~~~L~~l~~~ 171 (172)
T TIGR01145 142 KDLIGGVIIRI--GDRVIDGSVRGQLKRLSRQ 171 (172)
T ss_pred HHHhCceEEEE--CCEEEehhHHHHHHHHHhh
Confidence 37899999997 8888999999999887654
No 59
>PRK09098 type III secretion system protein HrpB; Validated
Probab=93.65 E-value=4.1 Score=34.85 Aligned_cols=52 Identities=19% Similarity=0.154 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 5 DVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYE 56 (230)
Q Consensus 5 ~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~ 56 (230)
++-.+.....+.|+.+|+++|++|..+|+++|+..+..=.+++..+...++.
T Consensus 43 ~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~~ 94 (233)
T PRK09098 43 AVLAAARARAERIVAEARAQAEAILEAARREADRSARRGYAAGLRQALAEWH 94 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677777777777777777777765554444555554444433
No 60
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=93.44 E-value=3.2 Score=33.01 Aligned_cols=35 Identities=9% Similarity=-0.066 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEA 46 (230)
Q Consensus 12 ~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~ 46 (230)
.-.+..+.+|+.++.+|...|.++++..+..++.+
T Consensus 77 ~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~ 111 (156)
T CHL00118 77 KQYEQELSKARKEAQLEITQSQKEAKEIVENELKQ 111 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777776554444433
No 61
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=93.28 E-value=3.6 Score=33.12 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 14 VRFIRQEAEEKANEISVSAEEEFNI 38 (230)
Q Consensus 14 ~~~I~~eA~eka~eI~~~A~ee~~~ 38 (230)
.+..+.+|+.++.+|..+|..+++.
T Consensus 67 ~e~~L~~A~~ea~~Ii~~A~~~a~~ 91 (167)
T PRK14475 67 VKAEREEAERQAAAMLAAAKADARR 91 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666643
No 62
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=93.14 E-value=7.8 Score=37.06 Aligned_cols=23 Identities=30% Similarity=0.156 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041442 15 RFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 15 ~~I~~eA~eka~eI~~~A~ee~~ 37 (230)
..++.+|+.+|+.|..+|+.+++
T Consensus 24 ~~~l~~Ae~eAe~i~keA~~eAk 46 (514)
T TIGR03319 24 EKKLGSAEELAKRIIEEAKKEAE 46 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555543
No 63
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=92.96 E-value=4 Score=32.72 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 12 QMVRFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 12 ~m~~~I~~eA~eka~eI~~~A~ee~~ 37 (230)
.-.+..+.+|+.++.+|..+|.+.++
T Consensus 59 ~e~e~~L~~Ar~EA~~Ii~~A~~~a~ 84 (154)
T PRK06568 59 EQTNAQIKKLETLRSQMIEESNEVTK 84 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777764
No 64
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=92.83 E-value=3.3 Score=32.50 Aligned_cols=41 Identities=27% Similarity=0.283 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQ 53 (230)
Q Consensus 13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~ 53 (230)
-.+.++++|+.+|..+...+..++..+..+++++....+..
T Consensus 63 e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~ 103 (141)
T PRK08476 63 EIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELES 103 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555554444544444443333
No 65
>PRK13429 F0F1 ATP synthase subunit delta; Provisional
Probab=92.53 E-value=2.7 Score=34.07 Aligned_cols=31 Identities=35% Similarity=0.461 Sum_probs=26.8
Q ss_pred CCCccceEEEecCCcEEEeccHHHHHHHHHhhc
Q 041442 184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQN 216 (230)
Q Consensus 184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~ 216 (230)
++.+||+++.. |...+|+|+.++|+.+...+
T Consensus 147 ~sligG~~i~~--~~~~iD~Si~~~L~~l~~~l 177 (181)
T PRK13429 147 PSLIGGVVVKI--GDKVLDASVRTQLRRLKETL 177 (181)
T ss_pred hhhhCceEEEE--CCEEEehhHHHHHHHHHHHH
Confidence 37899999998 77889999999998887665
No 66
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=92.24 E-value=5.1 Score=32.18 Aligned_cols=25 Identities=32% Similarity=0.234 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 13 MVRFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 13 m~~~I~~eA~eka~eI~~~A~ee~~ 37 (230)
-.+.-+.+|+.++.+|+..|..++.
T Consensus 62 ~~~~~l~~Ar~~a~~Ii~~A~~~a~ 86 (161)
T COG0711 62 EYEQELEEAREQASEIIEQAKKEAE 86 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777778777777774
No 67
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=92.17 E-value=1.8 Score=35.16 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=23.2
Q ss_pred ccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHH
Q 041442 187 SGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRK 222 (230)
Q Consensus 187 ~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~ 222 (230)
+||+++.. |..++|.|+ .|+.+...+..-|.+
T Consensus 143 IGG~ii~i--gd~v~D~s~--~l~~~~~~~~~~~~~ 174 (176)
T PRK08474 143 YDGIKVEV--DDLGVEVSF--SKDRLKNQLIEYILK 174 (176)
T ss_pred CCCEEEEE--CCEEEEeee--eHHHHHHHHHHHHHh
Confidence 99999998 999999954 566666655544433
No 68
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=92.03 E-value=5.2 Score=31.81 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHH
Q 041442 83 QAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQS 121 (230)
Q Consensus 83 ~ar~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea 121 (230)
..|..+.+-++..|..-|..-. ++.....++...|.+.
T Consensus 117 el~~~~~~lA~~~A~kil~~~l-~~~~~~~li~~~i~~~ 154 (159)
T PRK09173 117 AVRSSAVDLAIAAAEKLLAEKV-DAKAASELFKDALAQV 154 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHH
Confidence 3455566666666655555433 3335667777776554
No 69
>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.
Probab=92.03 E-value=0.041 Score=44.45 Aligned_cols=33 Identities=24% Similarity=0.529 Sum_probs=11.8
Q ss_pred CCCCCCccceEEEecCCcEEEeccHHHHHHHHHhh
Q 041442 181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQ 215 (230)
Q Consensus 181 ~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~ 215 (230)
..+++++|||++.. |+.++|.|+.++|+.+...
T Consensus 139 ~vD~sLigG~~i~~--~~~~iD~Sv~~~L~~l~~~ 171 (172)
T PF00213_consen 139 KVDPSLIGGFIIEV--GDKVIDASVKSRLEQLKKE 171 (172)
T ss_dssp --------------------TTTTTTTTTTTT-TT
T ss_pred EEccccCcEEEEEE--CCEEEehhHHHHHHHHHhc
Confidence 34578999999997 8888999999999776554
No 70
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated
Probab=91.96 E-value=2.4 Score=34.68 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=27.0
Q ss_pred CCCccceEEEecCCcEEEeccHHHHHHHHHhhcH
Q 041442 184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQNL 217 (230)
Q Consensus 184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~ 217 (230)
++.+||+++.. |...+|.|+.++|+.....+.
T Consensus 149 ~~ligGi~i~~--g~~~~D~Si~~~L~~l~~~l~ 180 (184)
T CHL00119 149 PSLIGGFLIKI--GSKVIDTSIKGQLKQLASHLD 180 (184)
T ss_pred hHHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence 37899999997 888899999999987776553
No 71
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=91.88 E-value=4.5 Score=33.14 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKMQL 43 (230)
Q Consensus 12 ~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~ 43 (230)
.-.+.++.+|+.++.+|+..|.++++..+..+
T Consensus 86 ~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~ 117 (181)
T PRK13454 86 KAYNKALADARAEAQRIVAETRAEIQAELDVA 117 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777766665444443
No 72
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=91.80 E-value=6.7 Score=32.62 Aligned_cols=116 Identities=17% Similarity=0.235 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 20 EAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKE 99 (230)
Q Consensus 20 eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v~~~a~ek 99 (230)
.++...+.|...|+++++ .+.. ....++++...++....+..........+.+.-..++.++..+..+++.+
T Consensus 3 ~~e~~i~~I~~~a~eeak----~I~~----eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~ 74 (194)
T COG1390 3 ELEKLIKKILREAEEEAE----EILE----EAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRK 74 (194)
T ss_pred cHHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888877764 2221 12222222211111111112234444556666777778888877777666
Q ss_pred HhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHH
Q 041442 100 LLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFA 154 (230)
Q Consensus 100 L~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~ 154 (230)
+.. .++.+|...+...-..|.. +.- +.+...+..++.++...|.
T Consensus 75 ~Le------~~ee~l~~~~~~~~e~L~~----i~~-~~~~~~l~~ll~~~~~~~~ 118 (194)
T COG1390 75 LLE------AKEEILESVFEAVEEKLRN----IAS-DPEYESLQELLIEALEKLL 118 (194)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHc----CcC-CcchHHHHHHHHHHHHhcC
Confidence 655 3556666655444444433 121 2233335666655554443
No 73
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=91.48 E-value=2.6 Score=31.98 Aligned_cols=35 Identities=31% Similarity=0.247 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEA 46 (230)
Q Consensus 12 ~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~ 46 (230)
.-.+..+.+|+.++.+|...|.++++..+..++.+
T Consensus 54 ~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~e 88 (132)
T PF00430_consen 54 AEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAE 88 (132)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777775544444433
No 74
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=91.37 E-value=4.9 Score=30.25 Aligned_cols=36 Identities=36% Similarity=0.398 Sum_probs=21.9
Q ss_pred CChHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 1 MNDADVSRQIQ---QMVRFIRQEAEEKANEISVSAEEEF 36 (230)
Q Consensus 1 ~~~~~~~~~i~---~m~~~I~~eA~eka~eI~~~A~ee~ 36 (230)
|++.++-..|. .-.+...++|++.++.|+..|++++
T Consensus 3 m~~~Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~ea 41 (108)
T COG2811 3 MDDSEVLREIKKAEISADEEIEEAKEEAEQIIKEAREEA 41 (108)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544443 2345566777777777777777776
No 75
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=91.30 E-value=5.6 Score=30.75 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEA 46 (230)
Q Consensus 13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~ 46 (230)
-.+..+.+|+.++.+|...|..+++..+..++..
T Consensus 61 ~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~ 94 (140)
T PRK07353 61 QYEQQLASARKQAQAVIAEAEAEADKLAAEALAE 94 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777776555554443
No 76
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=91.26 E-value=6.3 Score=31.30 Aligned_cols=11 Identities=9% Similarity=0.293 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 041442 139 RKLVESIVEEA 149 (230)
Q Consensus 139 ~~~v~~~~~~~ 149 (230)
..++..++.++
T Consensus 144 ~~li~~~i~~~ 154 (159)
T PRK09173 144 SELFKDALAQV 154 (159)
T ss_pred HHHHHHHHHHH
Confidence 35555555443
No 77
>PRK12704 phosphodiesterase; Provisional
Probab=91.18 E-value=15 Score=35.30 Aligned_cols=21 Identities=38% Similarity=0.303 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041442 16 FIRQEAEEKANEISVSAEEEF 36 (230)
Q Consensus 16 ~I~~eA~eka~eI~~~A~ee~ 36 (230)
.+..+|+.+|++|..+|+.++
T Consensus 31 ~~l~~Ae~eAe~I~keA~~eA 51 (520)
T PRK12704 31 AKIKEAEEEAKRILEEAKKEA 51 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544444
No 78
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=89.86 E-value=5.5 Score=28.34 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQ 53 (230)
Q Consensus 10 i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~ 53 (230)
...-...|+.+|+.+++.+..++..++..+...++...+..+..
T Consensus 18 A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~ 61 (85)
T TIGR02926 18 AEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEK 61 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555555555555555444444433
No 79
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=89.59 E-value=11 Score=31.47 Aligned_cols=9 Identities=33% Similarity=0.656 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 041442 139 RKLVESIVE 147 (230)
Q Consensus 139 ~~~v~~~~~ 147 (230)
..++.+++.
T Consensus 190 ~~lI~~~i~ 198 (205)
T PRK06231 190 DKLVDEFIR 198 (205)
T ss_pred HHHHHHHHH
Confidence 344555443
No 80
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=89.18 E-value=10 Score=30.47 Aligned_cols=11 Identities=18% Similarity=0.144 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 041442 110 YRTVLKGLIVQ 120 (230)
Q Consensus 110 Y~~~L~~Li~e 120 (230)
...++...|.+
T Consensus 151 ~~~lid~~i~~ 161 (167)
T PRK14475 151 SDPLVDAAIGQ 161 (167)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 81
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=88.44 E-value=24 Score=33.79 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 8 RQIQQMVRFIRQEAEEKANEISVSAEEEFNI 38 (230)
Q Consensus 8 ~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ 38 (230)
++.+++......+|++...+...+|++++..
T Consensus 32 ~eAe~i~keA~~eAke~~ke~~~EaeeE~~~ 62 (514)
T TIGR03319 32 ELAKRIIEEAKKEAETLKKEALLEAKEEVHK 62 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455555444433
No 82
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=88.38 E-value=15 Score=31.43 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 6 VSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYER 57 (230)
Q Consensus 6 ~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k 57 (230)
..++...|++.-..+|+...++|..+|+++++ ++.+.....|..+..+
T Consensus 69 a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~----~~~~~a~~~ie~E~~~ 116 (246)
T TIGR03321 69 LDQQREVLLTKAKEEAQAERQRLLDEAREEAD----EIREKWQEALRREQAA 116 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34455555555555666666666666666664 4444444445444433
No 83
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=87.83 E-value=15 Score=30.59 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041442 17 IRQEAEEKANEISVSAEEEFNI 38 (230)
Q Consensus 17 I~~eA~eka~eI~~~A~ee~~~ 38 (230)
-+..|+.+|..|...|+.+++.
T Consensus 28 ~~~~A~~~A~~i~~~A~~eAe~ 49 (201)
T PF12072_consen 28 KLEQAEKEAEQILEEAEREAEA 49 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555543
No 84
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=87.78 E-value=7.9 Score=31.03 Aligned_cols=24 Identities=8% Similarity=0.050 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 74 LNAARIKFLQAQDDAVNAMKEAAS 97 (230)
Q Consensus 74 ~~~~R~~~L~ar~~~i~~v~~~a~ 97 (230)
...++..+-..++..+.++-.++-
T Consensus 102 ~~~A~~~Ie~Ek~~Al~elr~eva 125 (154)
T PRK06568 102 KSDAIQLIQNQKSTASKELQDEFC 125 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666655555553
No 85
>PRK12704 phosphodiesterase; Provisional
Probab=87.73 E-value=27 Score=33.52 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 9 QIQQMVRFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 9 ~i~~m~~~I~~eA~eka~eI~~~A~ee~~ 37 (230)
+.+++......+|++...++..+|++++.
T Consensus 39 eAe~I~keA~~eAke~~ke~~leaeeE~~ 67 (520)
T PRK12704 39 EAKRILEEAKKEAEAIKKEALLEAKEEIH 67 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 86
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=86.74 E-value=20 Score=30.96 Aligned_cols=8 Identities=25% Similarity=0.439 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 041442 117 LIVQSMLR 124 (230)
Q Consensus 117 Li~ea~~~ 124 (230)
.|..++..
T Consensus 193 ~~~~~l~~ 200 (250)
T PRK14474 193 QILESLHQ 200 (250)
T ss_pred HHHHHHHH
Confidence 33344443
No 87
>PRK00106 hypothetical protein; Provisional
Probab=86.71 E-value=31 Score=33.23 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=11.7
Q ss_pred CCcEEEeccHHHHHHHHHhhcHHHHH
Q 041442 196 DGKIVLENTLDARLNVAFRQNLPEIR 221 (230)
Q Consensus 196 dg~i~vdnTle~rl~~~~~~~~p~I~ 221 (230)
||+|. -+.++.-++.++.++...|.
T Consensus 291 dgrIh-p~rIEe~v~k~~~e~~~~i~ 315 (535)
T PRK00106 291 DGRIH-PARIEELVEKNRLEMDNRIR 315 (535)
T ss_pred cCCcC-HHHHHHHHHHHHHHHHHHHH
Confidence 45543 44444444444444444443
No 88
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=84.57 E-value=14 Score=27.39 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 20 EAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERK 58 (230)
Q Consensus 20 eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~ 58 (230)
+|+.+++++...|+.++ ..++...+......|...
T Consensus 10 ~aE~~~e~~L~~A~~Ea----~~Ii~~Ak~~A~k~~~ei 44 (103)
T PRK08404 10 KAEKEAEERIEKAKEEA----KKIIRKAKEEAKKIEEEI 44 (103)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 56666666666666665 344444444444444433
No 89
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=84.25 E-value=14 Score=27.15 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 10 IQQMVRFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 10 i~~m~~~I~~eA~eka~eI~~~A~ee~~ 37 (230)
.++-...|..+|+.....+..+|..+++
T Consensus 12 AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~ 39 (105)
T PF03179_consen 12 AEKEAQEIVEEARKEREQRLKQAKEEAE 39 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666664
No 90
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=84.22 E-value=21 Score=29.08 Aligned_cols=10 Identities=0% Similarity=0.142 Sum_probs=4.8
Q ss_pred cHHHHHHHHH
Q 041442 138 DRKLVESIVE 147 (230)
Q Consensus 138 D~~~v~~~~~ 147 (230)
+..++..++.
T Consensus 165 ~~~lid~~i~ 174 (184)
T CHL00019 165 HLRTINANIG 174 (184)
T ss_pred HHHHHHHHHH
Confidence 3445555554
No 91
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=83.94 E-value=27 Score=30.06 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 041442 5 DVSRQIQQMVRFIRQEAEEKANEISVSAE---EEFNIEKMQLFEAEK 48 (230)
Q Consensus 5 ~~~~~i~~m~~~I~~eA~eka~eI~~~A~---ee~~~ek~~~~~~~~ 48 (230)
.+-.+...-.+.|+.+|+..|++|..+++ .++..++.+++++.+
T Consensus 44 ~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~ 90 (255)
T TIGR03825 44 QILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAK 90 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666778888888888888877764 333344444444433
No 92
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=83.37 E-value=16 Score=26.93 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 18 RQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAAS 97 (230)
Q Consensus 18 ~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v~~~a~ 97 (230)
+-+|+..|.+|..+|+.+.. .++...+.....++..-..+.+ ..........+.........+...+.
T Consensus 9 Ll~AE~eA~~iV~~Ar~~r~----~~lk~Ak~eA~~ei~~~r~~~e--------~~~~~~~~~~~~~~~~~~~~l~~et~ 76 (105)
T PF03179_consen 9 LLEAEKEAQEIVEEARKERE----QRLKQAKEEAEKEIEEFRAEAE--------EEFKEKEAEAEGEAEQEAEELEKETE 76 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHH-S------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhccchhHHHHHHHHHH
Confidence 34789999999999988863 4443333333322221100000 00111122334445566677777777
Q ss_pred HHHhhhccC
Q 041442 98 KELLNVSND 106 (230)
Q Consensus 98 ekL~~l~~~ 106 (230)
.++..+...
T Consensus 77 ~~i~~i~~~ 85 (105)
T PF03179_consen 77 EKIEEIKKS 85 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777654
No 93
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=82.98 E-value=22 Score=28.32 Aligned_cols=10 Identities=10% Similarity=0.235 Sum_probs=5.0
Q ss_pred cHHHHHHHHH
Q 041442 138 DRKLVESIVE 147 (230)
Q Consensus 138 D~~~v~~~~~ 147 (230)
+..++.+++.
T Consensus 149 ~~~li~~~i~ 158 (164)
T PRK14473 149 HDALIAESLA 158 (164)
T ss_pred HHHHHHHHHH
Confidence 4445555554
No 94
>KOG1662 consensus Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 [Energy production and conversion]
Probab=82.35 E-value=3.3 Score=34.51 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=25.4
Q ss_pred CCCccceEEEecCCcEEEeccHHHHHHHHHh
Q 041442 184 PSCSGGVVVASQDGKIVLENTLDARLNVAFR 214 (230)
Q Consensus 184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~ 214 (230)
+++.||++|+. |.-.||-|+.+|++.+-.
T Consensus 176 PSI~GGliVei--GdK~vDmSI~tr~q~l~~ 204 (210)
T KOG1662|consen 176 PSIIGGLIVEI--GDKYVDMSIKTRLQKLNK 204 (210)
T ss_pred hhhhcceEEEE--cCeeEeeeHHHHHHHHHH
Confidence 48999999987 888899999999977654
No 95
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=82.20 E-value=23 Score=28.03 Aligned_cols=6 Identities=17% Similarity=0.717 Sum_probs=2.4
Q ss_pred HHHHHH
Q 041442 141 LVESIV 146 (230)
Q Consensus 141 ~v~~~~ 146 (230)
++..++
T Consensus 149 li~~~i 154 (159)
T PRK13461 149 LIKDFI 154 (159)
T ss_pred HHHHHH
Confidence 444433
No 96
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=81.14 E-value=27 Score=28.13 Aligned_cols=7 Identities=14% Similarity=0.425 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 041442 140 KLVESIV 146 (230)
Q Consensus 140 ~~v~~~~ 146 (230)
.+++.++
T Consensus 159 ~lid~~i 165 (173)
T PRK13460 159 AFIETEL 165 (173)
T ss_pred HHHHHHH
Confidence 3344433
No 97
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=80.92 E-value=37 Score=29.56 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=23.2
Q ss_pred ccceEEEec----CCcEEEec---cHHHHHHHHHhhcHHHHHHH
Q 041442 187 SGGVVVASQ----DGKIVLEN---TLDARLNVAFRQNLPEIRKR 223 (230)
Q Consensus 187 ~GGvvl~~~----dg~i~vdn---Tle~rl~~~~~~~~p~I~~~ 223 (230)
.+|+-|... .|+.+|.. .+|++++.-++.+...+...
T Consensus 234 ~~~i~I~~D~~l~~GgcvIet~~G~IDasi~tqLe~l~~~L~e~ 277 (281)
T PRK06669 234 EEHLKIYEDDAISKGGCVIETDFGNIDARIDTQLKQLKEKLLEN 277 (281)
T ss_pred CCCeEEEECCCCCCCCeEEEcCCCeeeccHHHHHHHHHHHHHhh
Confidence 456666553 47877754 56777777776666555443
No 98
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=80.18 E-value=28 Score=27.69 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHH
Q 041442 84 AQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120 (230)
Q Consensus 84 ar~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~e 120 (230)
.+.++.+-++..|..-|..-..+++....++...|.+
T Consensus 124 l~~~i~~la~~~a~kil~~~l~~~~~~~~lid~~i~~ 160 (164)
T PRK14471 124 IKNQVANLSVEIAEKVLRKELSNKEKQHKLVEKMLGD 160 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHh
Confidence 4445555555555555544222212345555555543
No 99
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=76.07 E-value=39 Score=27.17 Aligned_cols=7 Identities=14% Similarity=0.648 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 041442 140 KLVESIV 146 (230)
Q Consensus 140 ~~v~~~~ 146 (230)
.++..++
T Consensus 162 ~li~~~i 168 (174)
T PRK07352 162 RLIDRSI 168 (174)
T ss_pred HHHHHHH
Confidence 3344443
No 100
>PRK12705 hypothetical protein; Provisional
Probab=73.41 E-value=89 Score=29.99 Aligned_cols=27 Identities=30% Similarity=0.175 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 10 IQQMVRFIRQEAEEKANEISVSAEEEF 36 (230)
Q Consensus 10 i~~m~~~I~~eA~eka~eI~~~A~ee~ 36 (230)
+.+-...|..+|+.+|+.++.++.-++
T Consensus 31 ~~~~a~~~~~~a~~~a~~~~~~~~~~~ 57 (508)
T PRK12705 31 LAKEAERILQEAQKEAEEKLEAALLEA 57 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566666666666665555444
No 101
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=71.57 E-value=46 Score=25.94 Aligned_cols=9 Identities=44% Similarity=0.327 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 041442 28 ISVSAEEEF 36 (230)
Q Consensus 28 I~~~A~ee~ 36 (230)
+...|+.++
T Consensus 67 ~l~~Ar~eA 75 (141)
T PRK08476 67 ILKNAREEA 75 (141)
T ss_pred HHHHHHHHH
Confidence 333333333
No 102
>PRK12705 hypothetical protein; Provisional
Probab=69.81 E-value=1.1e+02 Score=29.44 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 6 VSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQ 42 (230)
Q Consensus 6 ~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~ 42 (230)
.+++.+.+.....-+|++++..+..+++++++..+..
T Consensus 42 a~~~a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~ 78 (508)
T PRK12705 42 AQKEAEEKLEAALLEAKELLLRERNQQRQEARREREE 78 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666666666544443
No 103
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=68.72 E-value=66 Score=26.62 Aligned_cols=26 Identities=35% Similarity=0.312 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 11 QQMVRFIRQEAEEKANEISVSAEEEF 36 (230)
Q Consensus 11 ~~m~~~I~~eA~eka~eI~~~A~ee~ 36 (230)
..-...|+.+|+.+|+.+..++.-++
T Consensus 33 ~~~A~~i~~~A~~eAe~~~ke~~~ea 58 (201)
T PF12072_consen 33 EKEAEQILEEAEREAEAIKKEAELEA 58 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666665555554
No 104
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=61.48 E-value=74 Score=24.59 Aligned_cols=9 Identities=11% Similarity=0.449 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 041442 110 YRTVLKGLI 118 (230)
Q Consensus 110 Y~~~L~~Li 118 (230)
...++...|
T Consensus 136 ~~~lid~~i 144 (147)
T TIGR01144 136 QKDLIDKLV 144 (147)
T ss_pred HHHHHHHHH
Confidence 344444333
No 105
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=61.01 E-value=73 Score=24.39 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 041442 80 KFLQAQDDAVN 90 (230)
Q Consensus 80 ~~L~ar~~~i~ 90 (230)
.+...++.++.
T Consensus 109 ~i~~e~~~a~~ 119 (140)
T PRK07353 109 EIEQQKQAALA 119 (140)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 106
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=60.99 E-value=98 Score=25.84 Aligned_cols=12 Identities=8% Similarity=0.133 Sum_probs=5.2
Q ss_pred HHHHHHHHHhhh
Q 041442 92 MKEAASKELLNV 103 (230)
Q Consensus 92 v~~~a~ekL~~l 103 (230)
.+..+..++...
T Consensus 150 ~l~~Ae~~I~~e 161 (204)
T PRK09174 150 KLKEAEARIAAI 161 (204)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 107
>PRK10780 periplasmic chaperone; Provisional
Probab=56.14 E-value=1e+02 Score=24.55 Aligned_cols=52 Identities=10% Similarity=0.208 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHH
Q 041442 82 LQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVE 147 (230)
Q Consensus 82 L~ar~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~ 147 (230)
...++++...++..+.+-+..+.... .|.-+|. ...++|.+|. .++...++.
T Consensus 111 ~~~~~e~~~~i~~ki~~ai~~vak~~-gy~~Vld------------~~~v~Y~~~~-~DIT~~Vik 162 (165)
T PRK10780 111 RRRSNEERNKILTRIQTAVKSVANKQ-GYDLVVD------------ANAVAYNSSD-KDITADVLK 162 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCeEEEe------------CCceeeeCCC-CCchHHHHH
Confidence 34445566666666666666654443 4553331 1236787765 666666654
No 108
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=54.66 E-value=1.2e+02 Score=24.95 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 041442 21 AEEKANEISVSAEEEF 36 (230)
Q Consensus 21 A~eka~eI~~~A~ee~ 36 (230)
+...+.+|...|+++|
T Consensus 28 ~~~~a~~IL~~A~~qA 43 (191)
T PF06188_consen 28 AQQQAREILEDARQQA 43 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556667777777666
No 109
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=52.05 E-value=1.2e+02 Score=24.06 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 4 ADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNI 38 (230)
Q Consensus 4 ~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ 38 (230)
+||-=-+..|-+..+++..+...++.....++.+.
T Consensus 23 DDPILil~TiNe~ll~~~~~aq~~~l~~fk~elE~ 57 (144)
T PF11657_consen 23 DDPILILQTINERLLEDSAKAQQEQLDQFKEELEE 57 (144)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555555555555555443
No 110
>PRK06328 type III secretion system protein; Validated
Probab=47.36 E-value=1.7e+02 Score=24.64 Aligned_cols=113 Identities=10% Similarity=0.152 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 3 DADVSRQIQQMVRFIRQEAEEKANEISVSAEEEF-NIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKF 81 (230)
Q Consensus 3 ~~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~-~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~ 81 (230)
..++-.....-.+.|..+|+++++.|..+|.++- +.=... ..+....+..++..-..+. ... .+.-+..-+|+-+
T Consensus 31 A~~il~~a~~~ae~i~~ea~~e~E~i~eeA~~eGy~eG~~~-~~~~~~~l~~~~~~~~~~~--e~~-lv~Lal~ia~kVi 106 (223)
T PRK06328 31 AQELLEKTKEDSEAYTQETHEECEKLREEAKNQGFKEGSKA-WSKQLAFLEEETQKLREQV--KEA-LVPLAIASVKKII 106 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHH
Confidence 4566677778888999999999999999888773 221111 1111122222222211111 111 1222233333322
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhh-----hccChhhHHHHHHHHHHH
Q 041442 82 ---LQAQDDAVNAMKEAASKELLN-----VSNDKNKYRTVLKGLIVQ 120 (230)
Q Consensus 82 ---L~ar~~~i~~v~~~a~ekL~~-----l~~~~~~Y~~~L~~Li~e 120 (230)
+....+.|-.++..+...+.. +.-+| .+.+++.....+
T Consensus 107 ~~el~~d~e~il~lV~~aL~~l~~~~~v~I~VnP-~D~~~v~~~~~~ 152 (223)
T PRK06328 107 GKELELHPETIVSIIANSLKELTQHKRIIIHVNP-KDLAIVEKSRPE 152 (223)
T ss_pred HHHHhhCHHHHHHHHHHHHHhcccCCceEEEECH-HHHHHHHHHHHH
Confidence 233356667777777776654 34457 444566555443
No 111
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=42.22 E-value=1.3e+02 Score=22.71 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 2 NDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEF 36 (230)
Q Consensus 2 ~~~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~ 36 (230)
+|.++.+-++.+-..+..+|..+|..+..+=..|.
T Consensus 12 ~d~~~ee~~~~~q~~~e~eA~kkA~K~lkKN~rEI 46 (109)
T PHA02571 12 TDEEVEELLSELQARNEAEAEKKAAKILKKNRREI 46 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34556677777777777777777777777666554
No 112
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.04 E-value=4.5e+02 Score=26.97 Aligned_cols=30 Identities=10% Similarity=0.246 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 7 SRQIQQMVRFIRQEAEEKANEISVSAEEEF 36 (230)
Q Consensus 7 ~~~i~~m~~~I~~eA~eka~eI~~~A~ee~ 36 (230)
|..|++=...++.+-+.+.++...+-++|.
T Consensus 326 qaELerRRq~leeqqqreree~eqkEreE~ 355 (1118)
T KOG1029|consen 326 QAELERRRQALEEQQQREREEVEQKEREEE 355 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455565555555555555555555544444
No 113
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=38.80 E-value=65 Score=21.78 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=11.1
Q ss_pred CCCccceEEEecCCcE
Q 041442 184 PSCSGGVVVASQDGKI 199 (230)
Q Consensus 184 ~~~~GGvvl~~~dg~i 199 (230)
....||+|+++ |+.
T Consensus 34 ~~~~GGvV~eD--gR~ 47 (62)
T PF15513_consen 34 DRLTGGVVMED--GRH 47 (62)
T ss_pred CeEeccEEEeC--CCE
Confidence 47889999984 764
No 114
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=38.79 E-value=2e+02 Score=23.00 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHhhcC
Q 041442 109 KYRTVLKGLIVQSMLRLNE 127 (230)
Q Consensus 109 ~Y~~~L~~Li~ea~~~l~~ 127 (230)
.|.+-|.+|-..-...+.|
T Consensus 125 ~~~~~~i~~~~~i~~k~~~ 143 (155)
T PRK06569 125 NKSEAIIKLAVNIIEKIAG 143 (155)
T ss_pred hHHHHHHHHHHHHHHHHhC
Confidence 5777777777776666555
No 115
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=36.73 E-value=1.7e+02 Score=21.61 Aligned_cols=38 Identities=8% Similarity=0.200 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 50 KIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAV 89 (230)
Q Consensus 50 ~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i 89 (230)
+..++-+++.++.+.++....+....+.|+ |+.+++++
T Consensus 54 K~E~~~q~r~rES~~Er~K~~~s~~~~q~L--m~rQN~mm 91 (121)
T PF10669_consen 54 KKEEKRQKRNRESKRERQKFIWSMNKQQSL--MNRQNNMM 91 (121)
T ss_pred HHHHHHHHHhhhhHHHHHhHHhhhhHHHHH--HHHHhHHH
Confidence 333333333344444444445555544443 66666655
No 116
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=35.91 E-value=2.4e+02 Score=22.89 Aligned_cols=6 Identities=17% Similarity=0.279 Sum_probs=2.2
Q ss_pred HHHHHH
Q 041442 139 RKLVES 144 (230)
Q Consensus 139 ~~~v~~ 144 (230)
..-+..
T Consensus 168 ~~~~~~ 173 (181)
T PRK13454 168 AAAVDA 173 (181)
T ss_pred HHHHHH
Confidence 333333
No 117
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=32.49 E-value=4e+02 Score=24.53 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKK 49 (230)
Q Consensus 9 ~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~ 49 (230)
..+-+...++.+|..+++++..+--..|+.+++.+.+..+.
T Consensus 81 ek~d~~~klk~~~~p~~deL~~~ll~rY~~eyn~y~~~K~k 121 (424)
T KOG2880|consen 81 EKEDIRKKLKEEAFPRIDELKAKLLKRYNVEYNEYDHSKKK 121 (424)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 34456677789999999999999999998888887655543
No 118
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.63 E-value=4.7e+02 Score=23.45 Aligned_cols=23 Identities=0% Similarity=0.115 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041442 71 SMQLNAARIKFLQAQDDAVNAMK 93 (230)
Q Consensus 71 S~~~~~~R~~~L~ar~~~i~~v~ 93 (230)
......-|......|+++|+++-
T Consensus 166 ~~~e~ee~~~~~~~~~~~ld~L~ 188 (309)
T TIGR00570 166 QKEEEEQQMNKRKNKQALLDELE 188 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666777777664
No 119
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=26.30 E-value=2.9e+02 Score=20.90 Aligned_cols=38 Identities=5% Similarity=0.087 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHh
Q 041442 87 DAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLR 124 (230)
Q Consensus 87 ~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~ 124 (230)
....++=.++..+|..+........+-+..+|...+..
T Consensus 68 ~~~~~l~~et~~ki~~ik~~~~~~~~~Vv~~Ll~~V~~ 105 (113)
T TIGR01147 68 AAEEKAEAETQAKIREIKKAVQKNKDAVIKDLLHLVCD 105 (113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 44555556666666666544334555555556655543
No 120
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=26.10 E-value=50 Score=25.67 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHH
Q 041442 109 KYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFA 154 (230)
Q Consensus 109 ~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~ 154 (230)
.+..+++-++.-|+..++|+-++-++.|.|..++..+=+++...|-
T Consensus 4 ~w~~W~K~~~~G~~ii~~G~~l~~y~tPTeEeL~~r~sPELrkr~~ 49 (128)
T PF07960_consen 4 NWRRWAKMLVAGAVIIGGGPALVKYTTPTEEELFKRYSPELRKRYL 49 (128)
T ss_pred hHHHHHHHHHhcceeEeechHHheecCCCHHHHHHhcCHHHHHHHH
Confidence 4667777778888877777788999999999999998888776664
No 121
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=25.91 E-value=4.7e+02 Score=23.17 Aligned_cols=24 Identities=4% Similarity=-0.064 Sum_probs=10.2
Q ss_pred HHHHHHhhcC-CcEEEEeccccHHHH
Q 041442 118 IVQSMLRLNE-KAVLLRCREMDRKLV 142 (230)
Q Consensus 118 i~ea~~~l~~-~~~~v~~~~~D~~~v 142 (230)
-.+++..+.. +.-++.+ +.|.+.+
T Consensus 289 ~le~~~~~~~~~~~~~vl-~~~~~~~ 313 (317)
T TIGR01932 289 SLEAYEKSFKDNQDEKVL-STDSEFF 313 (317)
T ss_pred HHHHHHHHhCCCCCEEEE-CCCcHHH
Confidence 3455554443 2212333 4455544
No 122
>PHA03065 Hypothetical protein; Provisional
Probab=25.27 E-value=5.8e+02 Score=24.00 Aligned_cols=82 Identities=24% Similarity=0.340 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccChhhH-----HHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHH
Q 041442 81 FLQAQDDAVNAMKEAASKELLNVSNDKNKY-----RTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAE 155 (230)
Q Consensus 81 ~L~ar~~~i~~v~~~a~ekL~~l~~~~~~Y-----~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~ 155 (230)
.|..-..+.+++.....-||.+++ .| ..-|+.++.+++..+++.--+++|..-|.+.| +...+. ++..
T Consensus 112 ~ld~~d~~yEEikt~~~lrI~Kl~----F~~fLa~~~nlk~~l~~~L~~~~~~v~I~yCdgvDAEfv--MC~~ak-~~a~ 184 (438)
T PHA03065 112 NLDVDDEMYEEIKTDLELKIDKLS----FQLFLANSNNLKRLLESALARLGENVEIVYCDGVDAEFV--MCARAK-ELAA 184 (438)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHH----HHHHHcchhhHHHHHHHHHHhccCCceEEEECCcchhHH--HHHHHH-HHHh
Confidence 344445555555555555655532 11 24688999999999877655899999999876 233333 4445
Q ss_pred hhCCCCCeeeecCc
Q 041442 156 KTKRQAPKITMDDK 169 (230)
Q Consensus 156 ~~g~~~~~v~vd~~ 169 (230)
..|.++.=++.|.+
T Consensus 185 ~~g~WPl~iStDQD 198 (438)
T PHA03065 185 TTGEWPLLISTDQD 198 (438)
T ss_pred hcCCCceEEeccCC
Confidence 66776666666653
No 123
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=24.66 E-value=2.1e+02 Score=18.79 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcC
Q 041442 88 AVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNE 127 (230)
Q Consensus 88 ~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~ 127 (230)
.+..++......|..++.+. .|+.....++.+=+..+..
T Consensus 6 ~L~~lY~~~L~~L~~~P~~a-~YR~~tE~it~~Rl~iv~~ 44 (57)
T PF04716_consen 6 ALISLYNKTLKALKKIPEDA-AYRQYTEAITKHRLKIVEE 44 (57)
T ss_pred HHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHHHHc
Confidence 45678889999999999986 8999999999988876544
No 124
>PF10946 DUF2625: Protein of unknown function DUF2625; InterPro: IPR021239 Some members in this family of proteins are annotated as ybfG however currently no function is known.
Probab=23.11 E-value=56 Score=27.52 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecCccCCCCCCCCCCCCCCCCccc
Q 041442 110 YRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSADSHEPSCSGG 189 (230)
Q Consensus 110 Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GG 189 (230)
=..++...+.+|- ..|.+-|.|.......+-. +.|.. .+..|.
T Consensus 11 aW~~v~ew~~~a~-------n~~evLp~d~~~a~~~L~~---------------lQVtt---------------rS~lGA 53 (208)
T PF10946_consen 11 AWPLVQEWLKEAK-------NPVEVLPRDPERAEAVLYQ---------------LQVTT---------------RSPLGA 53 (208)
T ss_pred HHHHHHHHHHhCC-------CCEEECCCCHHHHHHHHHH---------------hCCcc---------------CchhHH
Confidence 3456666666652 2477888998877775532 22221 355677
Q ss_pred eEEEecCCcEEEecc
Q 041442 190 VVVASQDGKIVLENT 204 (230)
Q Consensus 190 vvl~~~dg~i~vdnT 204 (230)
|+..+ |+|.|||-
T Consensus 54 iiyet--GGilID~G 66 (208)
T PF10946_consen 54 IIYET--GGILIDNG 66 (208)
T ss_pred HHHhc--CCEEEeCC
Confidence 77766 77777773
No 125
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.21 E-value=8.3e+02 Score=24.74 Aligned_cols=8 Identities=13% Similarity=-0.155 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 041442 71 SMQLNAAR 78 (230)
Q Consensus 71 S~~~~~~R 78 (230)
..+..+++
T Consensus 564 ~~a~~ea~ 571 (771)
T TIGR01069 564 LELEKEAQ 571 (771)
T ss_pred HHHHHHHH
Confidence 33333333
No 126
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=21.94 E-value=2.1e+02 Score=24.21 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHHH
Q 041442 135 REMDRKLVESIVEEA 149 (230)
Q Consensus 135 ~~~D~~~v~~~~~~~ 149 (230)
...|..+++.+|-.+
T Consensus 202 ~~kD~sRmR~iLl~L 216 (225)
T PF01086_consen 202 SGKDVSRMREILLKL 216 (225)
T ss_dssp ---------------
T ss_pred CCCcHHHHHHHHHHh
Confidence 567788888777544
No 127
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=21.49 E-value=3.8e+02 Score=20.59 Aligned_cols=18 Identities=6% Similarity=0.279 Sum_probs=8.8
Q ss_pred cEEEEeccccHHHHHHHHH
Q 041442 129 AVLLRCREMDRKLVESIVE 147 (230)
Q Consensus 129 ~~~v~~~~~D~~~v~~~~~ 147 (230)
..++|.+| ..++...++.
T Consensus 138 ~~vly~~~-~~DIT~~Vi~ 155 (158)
T PF03938_consen 138 NAVLYADP-AYDITDEVIK 155 (158)
T ss_dssp GGEEEE-T-TSE-HHHHHH
T ss_pred CceEeeCC-CCChHHHHHH
Confidence 33667666 4455555554
No 128
>PF09561 RE_HpaII: HpaII restriction endonuclease; InterPro: IPR019062 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This family includes HpaII, which recognises the double-stranded sequence CCGG and cleaves after C-1.
Probab=20.75 E-value=1.1e+02 Score=27.86 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=19.5
Q ss_pred CCCccceEEEecCCcEEEeccHH
Q 041442 184 PSCSGGVVVASQDGKIVLENTLD 206 (230)
Q Consensus 184 ~~~~GGvvl~~~dg~i~vdnTle 206 (230)
.+..||++|...||.|.|..-++
T Consensus 289 ~~a~gGyivV~~dGevlcYHiy~ 311 (355)
T PF09561_consen 289 YDATGGYIVVKEDGEVLCYHIYN 311 (355)
T ss_pred ccccceEEEEeCCCCEEEEEehh
Confidence 46789999999999999986544
No 129
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=20.65 E-value=2.4e+02 Score=27.14 Aligned_cols=17 Identities=29% Similarity=0.778 Sum_probs=13.3
Q ss_pred CCccceEEEecCCcEEE
Q 041442 185 SCSGGVVVASQDGKIVL 201 (230)
Q Consensus 185 ~~~GGvvl~~~dg~i~v 201 (230)
..-||||+.|+|.++++
T Consensus 749 ey~GgVi~VsHDeRLi~ 765 (807)
T KOG0066|consen 749 EYNGGVIMVSHDERLIV 765 (807)
T ss_pred hccCcEEEEecccceee
Confidence 34699999999988754
No 130
>KOG4702 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.39 E-value=3e+02 Score=19.13 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=19.1
Q ss_pred ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 041442 2 NDADVSRQIQQMVRFIRQE-AEEKANEISVSA 32 (230)
Q Consensus 2 ~~~~~~~~i~~m~~~I~~e-A~eka~eI~~~A 32 (230)
++.+.-+..+..-++|+.. |++.|+.|...+
T Consensus 43 ~ppe~~~~~EE~~~~lRe~~a~~eaK~~R~a~ 74 (77)
T KOG4702|consen 43 SPPEATKRKEEYENFLREQMAFEEAKKIRGAA 74 (77)
T ss_pred CChHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455556666666777666 666666665443
No 131
>PTZ00491 major vault protein; Provisional
Probab=20.29 E-value=9.6e+02 Score=24.73 Aligned_cols=10 Identities=20% Similarity=0.487 Sum_probs=5.3
Q ss_pred hHHHHHHHHH
Q 041442 109 KYRTVLKGLI 118 (230)
Q Consensus 109 ~Y~~~L~~Li 118 (230)
.|..++..|=
T Consensus 789 kf~~~v~aig 798 (850)
T PTZ00491 789 KFERIVEALG 798 (850)
T ss_pred HHHHHHHhhC
Confidence 4655555543
Done!