Query 041442
Match_columns 230
No_of_seqs 135 out of 601
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 11:49:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efa_E V-type proton ATPase su 100.0 1.1E-52 3.6E-57 357.2 30.4 221 1-230 8-228 (233)
2 3v6i_A V-type ATP synthase sub 100.0 1.1E-33 3.7E-38 232.7 27.1 182 12-226 2-187 (187)
3 2dm9_A V-type ATP synthase sub 100.0 2.4E-31 8.3E-36 218.7 12.0 189 5-226 10-198 (198)
4 3lg8_A A-type ATP synthase sub 99.9 9.6E-27 3.3E-31 174.5 -2.9 102 109-225 4-106 (106)
5 3v6i_A V-type ATP synthase sub 97.0 0.032 1.1E-06 44.7 14.6 115 5-120 6-136 (187)
6 2kk7_A V-type ATP synthase sub 96.8 0.0057 2E-07 39.1 6.9 29 9-37 7-35 (52)
7 2dm9_A V-type ATP synthase sub 94.2 0.013 4.4E-07 46.8 1.1 180 9-224 3-192 (198)
8 2kk7_A V-type ATP synthase sub 93.5 0.22 7.6E-06 31.5 5.8 35 4-38 13-47 (52)
9 1l2p_A ATP synthase B chain; a 92.7 1.3 4.3E-05 28.5 9.8 21 17-37 3-23 (61)
10 1l2p_A ATP synthase B chain; a 91.8 1.6 5.6E-05 27.9 9.7 48 9-56 6-53 (61)
11 2wss_S ATP synthase subunit O, 83.4 0.055 1.9E-06 43.5 -3.7 32 183-216 155-186 (190)
12 2k6i_A Uncharacterized protein 80.8 2.8 9.5E-05 26.8 4.4 23 14-36 28-50 (56)
13 4efa_E V-type proton ATPase su 71.7 38 0.0013 27.3 16.7 98 5-102 23-134 (233)
14 2k6i_A Uncharacterized protein 70.0 12 0.00039 23.9 5.2 19 19-37 22-40 (56)
15 3v6i_B V-type ATP synthase, su 38.5 1.1E+02 0.0036 21.9 12.3 42 15-56 30-74 (105)
16 3fx7_A Putative uncharacterize 33.9 52 0.0018 23.1 4.1 36 84-119 45-80 (94)
17 3bpj_A Eukaryotic translation 27.2 1.1E+02 0.0036 20.6 4.7 48 95-152 22-69 (80)
18 3m91_A Proteasome-associated A 26.6 1.2E+02 0.004 18.7 5.0 30 75-104 14-43 (51)
19 1use_A VAsp, vasodilator-stimu 24.1 1.2E+02 0.0042 18.2 4.1 23 75-97 18-40 (45)
20 1nwz_A PYP, photoactive yellow 21.4 71 0.0024 23.4 3.1 25 186-210 26-50 (125)
21 4e22_A Cytidylate kinase; P-lo 20.9 1.2E+02 0.004 24.3 4.7 29 187-215 145-183 (252)
22 1mzu_A PPR; photoactive yellow 20.4 76 0.0026 23.4 3.1 25 186-210 31-55 (129)
No 1
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=100.00 E-value=1.1e-52 Score=357.25 Aligned_cols=221 Identities=32% Similarity=0.535 Sum_probs=206.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 1 MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIK 80 (230)
Q Consensus 1 ~~~~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~ 80 (230)
|||+||+++|++|++||++||++||++|..+|++||+++|.+++++++.++...|+++.++++..+++.+|++.+++|++
T Consensus 8 l~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~ 87 (233)
T 4efa_E 8 LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLK 87 (233)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCC
Q 041442 81 FLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQ 160 (230)
Q Consensus 81 ~L~ar~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~ 160 (230)
+|.+|+++|+++|+.|+++|.+++.++..|..+|.+||.+|+..++++.++|+|+|.|.++++.+++++..+|+..+|..
T Consensus 88 vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~ 167 (233)
T 4efa_E 88 VLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRA 167 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999998878999999999999999999999999999999999999999999999888875
Q ss_pred CCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcCCCCC
Q 041442 161 APKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVGV 230 (230)
Q Consensus 161 ~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~~~~~ 230 (230)
+....++...+|++ .+|+|||+|++.||+|+|||||++||+.++++++|+|++.|||+|++
T Consensus 168 ~~~~~~~~~~~l~~---------~~~~GGvil~s~dGkI~vdNTle~RL~~~~~~~lp~Ir~~LFG~~~~ 228 (233)
T 4efa_E 168 PLEEIVISNDYLNK---------DLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYGPSKT 228 (233)
T ss_dssp CCCEEEECSSCCCT---------TTCSSEEEEECTTSCCEEEEEHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred CccccccccccCCc---------ccccCceEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCcCCC
Confidence 43333444456664 47999999999999999999999999999999999999999999974
No 2
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=100.00 E-value=1.1e-33 Score=232.68 Aligned_cols=182 Identities=20% Similarity=0.250 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQE---YERK-SKQAEARRKIEYSMQLNAARIKFLQAQDD 87 (230)
Q Consensus 12 ~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e---~~k~-~~~~e~~~~i~~S~~~~~~R~~~L~ar~~ 87 (230)
++...|.++|+++|++|..+|+++++ .|+.+.+.+.... +.++ ..+.+..+++.+|++.+++|+++|.+|++
T Consensus 2 ~~~~~l~~eA~~~a~~I~~eA~~~a~----~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~e 77 (187)
T 3v6i_A 2 KLEAILSQEVEAEIQALLQEAEAKAE----AVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGE 77 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666653 3333333332222 2222 34455556678899999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeec
Q 041442 88 AVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMD 167 (230)
Q Consensus 88 ~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd 167 (230)
+++++|+.|+++|.+++.++ .|..+|.+||.+|+..+++++++| |+|.|.++++.++++ + | +++.
T Consensus 78 li~~v~~~a~~~L~~~~~~~-~Y~~~L~~Li~ea~~~l~~~~~vv-~~~~D~~~v~~~~~~----~----~-----~~~~ 142 (187)
T 3v6i_A 78 VLEEVRRRVREALEALPQKP-EWPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARE----R----G-----VELQ 142 (187)
T ss_dssp HHHHHHHHHHHHHHHGGGST-THHHHHHHHHHHHHHHCTTCCEEE-ECTTTHHHHHHHHHH----H----T-----CEEE
T ss_pred HHHHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHHHHcCCCCeEE-ECHHHHHHHHHHHHh----c----C-----eeeC
Confidence 99999999999999999885 799999999999999999988866 999999999988763 2 2 2332
Q ss_pred CccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcC
Q 041442 168 DKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226 (230)
Q Consensus 168 ~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~ 226 (230)
. | .+|.|||+|+++||+|.|||||++||+.++++++|+|++.|||
T Consensus 143 ~----~----------~~~~GGvil~~~dG~I~vdnTle~rL~~~~~~~~~~I~~~LFg 187 (187)
T 3v6i_A 143 A----E----------PALRLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVAQALWG 187 (187)
T ss_dssp E----C----------TTCCSEEEEECTTSSCEEEEEHHHHHHHHHHHHHHHHHHHHC-
T ss_pred C----C----------CcccCceEEEeCCCCEEEECCHHHHHHHHHHHhHHHHHHHhcC
Confidence 1 1 3799999999999999999999999999999999999999998
No 3
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=99.97 E-value=2.4e-31 Score=218.75 Aligned_cols=189 Identities=25% Similarity=0.384 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 5 DVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQA 84 (230)
Q Consensus 5 ~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~a 84 (230)
++-++...+.++|+++|+++|++|..+|+++++.++..++++.. ++++..+++.+|.+.++.|+.++.+
T Consensus 10 ~il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~-----------~e~~~~~~~~~s~~~~~~r~~~l~~ 78 (198)
T 2dm9_A 10 EINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAK-----------TQAELEKQRIIANARLEVRRKRLAI 78 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777777777777666666554443 3344455677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCee
Q 041442 85 QDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKI 164 (230)
Q Consensus 85 r~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v 164 (230)
|+++++.+|..|...|.+++ +..|+.+|.+||.+++..++++.++|+|+|.|.++++.+++.+...|+ + +++
T Consensus 79 ~~ev~~~~~~~a~~~l~~l~--~~~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v~~~~~~~~~~~~---~---~~l 150 (198)
T 2dm9_A 79 QEEIISSVLEEVKRRLETMS--EDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG---D---VSI 150 (198)
T ss_dssp --CHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT---T---CEE
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHHHHHHHHHHHHhc---C---ceE
Confidence 99999999999999999976 337999999999999999888899999999999999999988777775 2 467
Q ss_pred eecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcC
Q 041442 165 TMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226 (230)
Q Consensus 165 ~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~ 226 (230)
+++. | ..+.|||+|.+++|+|.|||||++||+.+++.+.|.|++.|||
T Consensus 151 ~i~~----~----------~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~~~i~~~LF~ 198 (198)
T 2dm9_A 151 ELGE----T----------VDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG 198 (198)
T ss_dssp EECC----C----------CCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred EECC----C----------CCccCceEEEeCCCCEEEECcHHHHHHHHHHHhHHHHHHHhcC
Confidence 7753 1 4789999999999999999999999999999999999999997
No 4
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=9.6e-27 Score=174.53 Aligned_cols=102 Identities=24% Similarity=0.412 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHH-HHHHHHHHHHhhCCCCCeeeecCccCCCCCCCCCCCCCCCCc
Q 041442 109 KYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESI-VEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSADSHEPSCS 187 (230)
Q Consensus 109 ~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~-~~~~~~~~~~~~g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~ 187 (230)
+|+++|++||.+|+..+++++++|+|+++|.+++++. ++++.++|+..+|.+ ++++++. | .+|.
T Consensus 4 ~Y~~lL~~LI~q~~~~l~e~~v~v~~r~~D~~lv~~~~l~~~~~e~~~~~g~~-~~v~~~~-------~-------~~~~ 68 (106)
T 3lg8_A 4 EYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKKV-TVLKKGE-------P-------VDIA 68 (106)
T ss_dssp STTTHHHHHHHHHHHHHTCSSCCCBCSSHHHHTTTTSSCTTTTTTHHHHSSSC-CCCCCCC-------C-------CSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECHhhHHHHHHhhHHHHHHHHHHHhCCe-EEEEeCC-------C-------cccc
Confidence 7999999999999999999999999999999999998 999999999988874 4454432 2 5899
Q ss_pred cceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhc
Q 041442 188 GGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLL 225 (230)
Q Consensus 188 GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF 225 (230)
|||++++.||+|.|||||++||++++++++|+|++.||
T Consensus 69 GGvil~s~dg~I~vdNTle~rL~~l~~~~~~eI~~~LF 106 (106)
T 3lg8_A 69 GGCIIETADGLKSLDNSLEAIFNRNLNVIRARITEKLF 106 (106)
T ss_dssp CBCBCSSCSCBCCCCSHHHHSHHHHHHHHHHHTTTSCC
T ss_pred ccEEEEeCCCCEEEECCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999
No 5
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=96.98 E-value=0.032 Score=44.69 Aligned_cols=115 Identities=17% Similarity=0.108 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Q 041442 5 DVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIE--------YSMQLNA 76 (230)
Q Consensus 5 ~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~--------~S~~~~~ 76 (230)
-++.+.+.-.+.|+.+|+++|++|..+|+++++..+.....+...+....+++....+.+..+.. +......
T Consensus 6 ~l~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~ 85 (187)
T 3v6i_A 6 ILSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRR 85 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778889999999999999999999999887777777666666666665544444333222 2223333
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHhh---hccChhhHHHHHHHHHHH
Q 041442 77 ARIKFLQA-----QDDAVNAMKEAASKELLN---VSNDKNKYRTVLKGLIVQ 120 (230)
Q Consensus 77 ~R~~~L~a-----r~~~i~~v~~~a~ekL~~---l~~~~~~Y~~~L~~Li~e 120 (230)
++..+.+. ...++..++.++...|.. +.-+| .-..++..++..
T Consensus 86 a~~~L~~~~~~~~Y~~~L~~Li~ea~~~l~~~~~vv~~~-~D~~~v~~~~~~ 136 (187)
T 3v6i_A 86 VREALEALPQKPEWPEVVRKLALEALEALPGAKALVANP-EDLPHLEALARE 136 (187)
T ss_dssp HHHHHHHGGGSTTHHHHHHHHHHHHHHHCTTCCEEEECT-TTHHHHHHHHHH
T ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHHHcCCCCeEEECH-HHHHHHHHHHHh
Confidence 44333322 346667777776665533 11233 223455555543
No 6
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=96.78 E-value=0.0057 Score=39.08 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 9 QIQQMVRFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 9 ~i~~m~~~I~~eA~eka~eI~~~A~ee~~ 37 (230)
-|+++++.|+++|+.+|+.|..+|+.+++
T Consensus 7 gle~i~~kI~~eA~~eA~~Il~eA~~eA~ 35 (52)
T 2kk7_A 7 GVDKIKSKILDDAKAEANKIISEAEAEKA 35 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999984
No 7
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=94.19 E-value=0.013 Score=46.77 Aligned_cols=180 Identities=14% Similarity=0.247 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDA 88 (230)
Q Consensus 9 ~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~ 88 (230)
.|++|++.|+++|+++++.|..+|+++++ .++.+...+...+.. ....+++...-..++..
T Consensus 3 ~le~l~~~il~~A~~~a~~il~eA~~~a~----~i~~~a~~e~~~~~~---------------~~~~~a~~e~~~~~~~~ 63 (198)
T 2dm9_A 3 GAELIIQEINKEAERKIEYILNEARQQAE----KIKEEARRNAEAKAE---------------WIIRRAKTQAELEKQRI 63 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999984 333222222111111 11112222333344455
Q ss_pred HHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecC
Q 041442 89 VNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDD 168 (230)
Q Consensus 89 i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~ 168 (230)
+..+..+++..+..... .++..++..+...+.. + +.+....++..++.+....+ +...+.|.+.+
T Consensus 64 ~s~~~~~~r~~~l~~~~------ev~~~~~~~a~~~l~~--l---~~~~y~~~l~~li~e~~~~~----~~~~v~i~v~~ 128 (198)
T 2dm9_A 64 IANARLEVRRKRLAIQE------EIISSVLEEVKRRLET--M---SEDEYFESVKALLKEAIKEL----NEKKVRVMSNE 128 (198)
T ss_dssp -----------------------CHHHHHHHHHHHHHHH--C---CHHHHHHHHHHHHHHHHHHH----TCSEEEEECCH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHh--c---CHHHHHHHHHHHHHHHHHHc----CCCCEEEEECH
Confidence 55555666555555433 3444444444444421 1 12334566777776554333 22223444432
Q ss_pred cc--CCCCCCCCCCCCCCCCccceEEE---ecCCcEEEec-----cHHHHHHHHHhhcHHHHHHHh
Q 041442 169 KV--FLPPPPKSADSHEPSCSGGVVVA---SQDGKIVLEN-----TLDARLNVAFRQNLPEIRKRL 224 (230)
Q Consensus 169 ~~--~L~~~~~~~~~~~~~~~GGvvl~---~~dg~i~vdn-----Tle~rl~~~~~~~~p~I~~~L 224 (230)
.. .+.. .........+ .+|+.+. ...|++++.. .++.-|+..++.+...+...+
T Consensus 129 ~D~~~v~~-~~~~~~~~~~-~~~l~i~~~~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~~~i 192 (198)
T 2dm9_A 129 KTLGLIAS-RIEEIKSELG-DVSIELGETVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTI 192 (198)
T ss_dssp HHHHHHHH-THHHHHHHCT-TCEEEECCCCCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHhc-CceEEECCCCCccCceEEEeCCCCEEEECcHHHHHHHHHHHhHHHH
Confidence 10 0000 0000000000 2466663 2358888854 588999999988888877654
No 8
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=93.50 E-value=0.22 Score=31.52 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 4 ADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNI 38 (230)
Q Consensus 4 ~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ 38 (230)
+++..+.+.-.+.|+.+|+.+|++|..+|+.+++.
T Consensus 13 ~kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~ 47 (52)
T 2kk7_A 13 SKILDDAKAEANKIISEAEAEKAKILEKAKEEAEK 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888999999999999999999999853
No 9
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=92.67 E-value=1.3 Score=28.50 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041442 17 IRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 17 I~~eA~eka~eI~~~A~ee~~ 37 (230)
.+.+|+.++.+|+..|..+++
T Consensus 3 ~L~~Ar~ea~~Ii~~A~~~a~ 23 (61)
T 1l2p_A 3 QLKKAKAEAQVIIEQANKRRS 23 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666655555553
No 10
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=91.84 E-value=1.6 Score=27.94 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYE 56 (230)
Q Consensus 9 ~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~ 56 (230)
....-...|+.+|+..+..|...+..++..+..+++......|..+..
T Consensus 6 ~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~ 53 (61)
T 1l2p_A 6 KAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777766667777666666655443
No 11
>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A
Probab=83.37 E-value=0.055 Score=43.48 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=15.1
Q ss_pred CCCCccceEEEecCCcEEEeccHHHHHHHHHhhc
Q 041442 183 EPSCSGGVVVASQDGKIVLENTLDARLNVAFRQN 216 (230)
Q Consensus 183 ~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~ 216 (230)
+++++|||+|.- |..++|.|+.++|+.+...+
T Consensus 155 DpsLiGG~~v~v--gd~viD~Sv~~~L~~l~~~L 186 (190)
T 2wss_S 155 DPSIMGGMIVRI--GEKYVDMSAKTKIQKLSRAM 186 (190)
T ss_dssp ----------------CCTTTTTTTTTTTTCTTT
T ss_pred ChhHhCeEEEEE--CCEEEehhHHHHHHHHHHHH
Confidence 468999999997 88889999999998776654
No 12
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=80.80 E-value=2.8 Score=26.83 Aligned_cols=23 Identities=30% Similarity=0.237 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041442 14 VRFIRQEAEEKANEISVSAEEEF 36 (230)
Q Consensus 14 ~~~I~~eA~eka~eI~~~A~ee~ 36 (230)
...|..+|++++++|+..|.+++
T Consensus 28 A~~iVeeA~~ea~~ii~eAreeA 50 (56)
T 2k6i_A 28 AVKEIEEAKNRAEQIKAEAIEEA 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555444
No 13
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=71.74 E-value=38 Score=27.33 Aligned_cols=98 Identities=10% Similarity=0.050 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Q 041442 5 DVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEA--------RRKIEYSMQLNA 76 (230)
Q Consensus 5 ~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~--------~~~i~~S~~~~~ 76 (230)
-+.++.+.-.+.|...|+++++.++.++.+++........++...++..........+.. .++-.+......
T Consensus 23 fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~vL~ar~e~i~~v~~~ 102 (233)
T 4efa_E 23 FIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEE 102 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677778889999999999988888887776544444444433333322221111111 112223444444
Q ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHhh
Q 041442 77 ARIKFLQA------QDDAVNAMKEAASKELLN 102 (230)
Q Consensus 77 ~R~~~L~a------r~~~i~~v~~~a~ekL~~ 102 (230)
++.++... ...++..++.++...|..
T Consensus 103 a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e 134 (233)
T 4efa_E 103 TKEKLSGIANNRDEYKPILQSLIVEALLKLLE 134 (233)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCC
Confidence 55444332 346777777777777743
No 14
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=70.01 E-value=12 Score=23.92 Aligned_cols=19 Identities=26% Similarity=0.151 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041442 19 QEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 19 ~eA~eka~eI~~~A~ee~~ 37 (230)
.+|+.+|++|+.+|.++++
T Consensus 22 KeAE~~A~~iVeeA~~ea~ 40 (56)
T 2k6i_A 22 KLAEEQAVKEIEEAKNRAE 40 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3789999999999998874
No 15
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=38.50 E-value=1.1e+02 Score=21.86 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 041442 15 RFIRQEAEEKANEISVSAEEEFNI---EKMQLFEAEKKKIKQEYE 56 (230)
Q Consensus 15 ~~I~~eA~eka~eI~~~A~ee~~~---ek~~~~~~~~~~i~~e~~ 56 (230)
.....+|+.+|..|...|++.+.. +...-+..++.+|..++.
T Consensus 30 ~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~ri~~ear 74 (105)
T 3v6i_B 30 EERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETEALLARYR 74 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555422 233333444444444444
No 16
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=33.89 E-value=52 Score=23.11 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHH
Q 041442 84 AQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIV 119 (230)
Q Consensus 84 ar~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ 119 (230)
.+..-.+++|++....|..+.....+|-++|+.+|.
T Consensus 45 qkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~ 80 (94)
T 3fx7_A 45 ARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIR 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 455667889999999999988776689999999885
No 17
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=27.21 E-value=1.1e+02 Score=20.62 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=33.6
Q ss_pred HHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHH
Q 041442 95 AASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKE 152 (230)
Q Consensus 95 ~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~ 152 (230)
....+|..+..++ .|..|+..|+.+.+.-+. ..|..-+...+.-+.++
T Consensus 22 ~l~~kl~~~~ks~-~y~~f~~~lir~l~~~L~---------~~dikkv~s~l~~l~nE 69 (80)
T 3bpj_A 22 LLKDKITQYEKSL-YYASFLEVLVRDVCISLE---------IDDLKKITNSLTVLCSE 69 (80)
T ss_dssp HHHHHHGGGTTST-THHHHHHHHHHHHHTTSC---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCh-hHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHHHH
Confidence 3445677777777 899999999999986543 45666666666544433
No 18
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=26.59 E-value=1.2e+02 Score=18.73 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 041442 75 NAARIKFLQAQDDAVNAMKEAASKELLNVS 104 (230)
Q Consensus 75 ~~~R~~~L~ar~~~i~~v~~~a~ekL~~l~ 104 (230)
++.+..-|.+|+.-+...+..|+.+|..+.
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556788889999999999999998775
No 19
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=24.07 E-value=1.2e+02 Score=18.17 Aligned_cols=23 Identities=4% Similarity=0.255 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041442 75 NAARIKFLQAQDDAVNAMKEAAS 97 (230)
Q Consensus 75 ~~~R~~~L~ar~~~i~~v~~~a~ 97 (230)
.+.|+++-++++++|+.+..+..
T Consensus 18 ~E~RkElqK~K~EIIeAi~~El~ 40 (45)
T 1use_A 18 EEVKKELQKVKEEIIEAFVQELR 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777776665543
No 20
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=21.39 E-value=71 Score=23.39 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.9
Q ss_pred CccceEEEecCCcEEEeccHHHHHH
Q 041442 186 CSGGVVVASQDGKIVLENTLDARLN 210 (230)
Q Consensus 186 ~~GGvvl~~~dg~i~vdnTle~rl~ 210 (230)
+-=|+++.+.+|+|.+=|.+..++.
T Consensus 26 l~~Gii~lD~~g~I~~~N~~~e~~s 50 (125)
T 1nwz_A 26 LAFGAIQLDGDGNILQYNAAEGDIT 50 (125)
T ss_dssp CSSEEEEEETTCBEEEECHHHHHHH
T ss_pred cCceEEEECCCCEEEEEHHHHHHHh
Confidence 4469999999999999999998874
No 21
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=20.89 E-value=1.2e+02 Score=24.32 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=22.0
Q ss_pred ccceEEEecCC----------cEEEeccHHHHHHHHHhh
Q 041442 187 SGGVVVASQDG----------KIVLENTLDARLNVAFRQ 215 (230)
Q Consensus 187 ~GGvvl~~~dg----------~i~vdnTle~rl~~~~~~ 215 (230)
.||+|+...+- .|.++.+++.|+++.+.+
T Consensus 145 ~~~~V~~gr~~~~~v~~~~~~~ifl~A~~e~r~~R~~~~ 183 (252)
T 4e22_A 145 APGLIADGRDMGTIVFPDAPVKIFLDASSQERAHRRMLQ 183 (252)
T ss_dssp SSCEEEEESSCCCCCSTTCSEEEEEECCHHHHHHHHHHH
T ss_pred CCCEEEEeceeceeecCCCCEEEEEECCHHHHHHHHHHH
Confidence 47777765433 389999999999998764
No 22
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=20.40 E-value=76 Score=23.43 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.8
Q ss_pred CccceEEEecCCcEEEeccHHHHHH
Q 041442 186 CSGGVVVASQDGKIVLENTLDARLN 210 (230)
Q Consensus 186 ~~GGvvl~~~dg~i~vdnTle~rl~ 210 (230)
+-=|+++.+.+|+|.+=|.+..++.
T Consensus 31 l~~GiivlD~dg~I~~~N~~~e~is 55 (129)
T 1mzu_A 31 LPVGAIQVDGSGVIHRYNRTESRLS 55 (129)
T ss_dssp CSSEEEEEETTCBEEEECHHHHHHH
T ss_pred cCceEEEECCCCeEEEEHHHHHHHh
Confidence 4459999999999999999998874
Done!