BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041444
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 165/377 (43%), Gaps = 39/377 (10%)
Query: 3 SKIPQLHVFFFPFMAHGHMIPIVDMAK-LFATRGVKASVITTPANAPYVSKSVERANELG 61
SK P HV P GH+IP+V+ AK L G+ + + P +R
Sbjct: 4 SKTP--HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPP---SKAQRTVLDS 58
Query: 62 IELDVKTIKFPSVEAGLPDGCENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRDHK-P 120
+ + ++ P V+ +L + T + + + + +L++ + + + P
Sbjct: 59 LPSSISSVFLPPVD------LTDLSSSTR-IESRISLTVTRSNPELRKVFDSFVEGGRLP 111
Query: 121 DCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLRLYEPHKKVSSD----SEPF 176
LV D+F A D A +F +P +F+ T+ L S L L + + VS + +EP
Sbjct: 112 TALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVL--SFFLHLPKLDETVSCEFRELTEPL 169
Query: 177 VMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESESRSYGVAVNSFYELEPAYAD 236
++P G + + D QD D+ LL T + + G+ VN+F+ELEP
Sbjct: 170 MLP---GCVPVAGKDFLD-PAQDRKDDAYKWLLHNTKRYK-EAEGILVNTFFELEP---- 220
Query: 237 HYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSL 296
+ KAL PV KQ +E ECLKWL+++ SV+Y+ FGS
Sbjct: 221 NAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQT--EESECLKWLDNQPLGSVLYVSFGSG 278
Query: 297 ANFTSAQLMEIATGLEASGRNFIWVVRXXXXXX--------XXXXXXXWLPEGFEKRMEG 348
T QL E+A GL S + F+WV+R +LP GF +R +
Sbjct: 279 GTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKK 338
Query: 349 KGLIIRGWAPQVLILDH 365
+G +I WAPQ +L H
Sbjct: 339 RGFVIPFWAPQAQVLAH 355
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 160/375 (42%), Gaps = 48/375 (12%)
Query: 2 GSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELG 61
G+ + + V FPF H P++ + K AT K + R+NE
Sbjct: 10 GNNLLHVAVLAFPFGTHA--APLLSLVKKIATEAPKVTFSFFCTTTTN-DTLFSRSNEF- 65
Query: 62 IELDVKTIKFPSVEAGLPDGCENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPD 121
+ IK+ +V GLP G +++ +E I F+ A +QE + ++ + +
Sbjct: 66 ----LPNIKYYNVHDGLPKGY-----VSSGNPREPIFLFIKA---MQENFKHVIDEAVAE 113
Query: 122 ------CLVADIFFPWATDAAAKFG---IPRLVFHGTSFFSLCASNCLRLYEPHKKVSSD 172
CLV D FF + D A + +P S + ++ +R K+V
Sbjct: 114 TGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDV 173
Query: 173 SEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESESRSYGVAVNSFYELEP 232
V+P FP +L + LP+ V +D+ D + +L R+ VA+NSF + P
Sbjct: 174 KSIDVLPGFP---ELKASDLPEGVIKDI-DVPFATMLHKMGLELPRANAVAINSFATIHP 229
Query: 233 AYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYIC 292
+ + ++GP +L ++ DE CL+WL+ + +SVVYI
Sbjct: 230 LIENELNSKF-KLLLNVGPFNLTTP---------QRKVSDEHGCLEWLDQHENSSVVYIS 279
Query: 293 FGSLANFTSAQLMEIATGLEASGRNFIWVVRXXXXXXXXXXXXXWLPEGFEKRMEGKGLI 352
FGS+ +L +A LE G FIW R LP+GF +R + KG I
Sbjct: 280 FGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEK--------LPKGFLERTKTKGKI 331
Query: 353 IRGWAPQVLILDHEA 367
+ WAPQV IL H +
Sbjct: 332 V-AWAPQVEILKHSS 345
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/374 (23%), Positives = 150/374 (40%), Gaps = 31/374 (8%)
Query: 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKT 68
HV P+ GH+ P+ +AKL RG + + T N + KS G
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGF----TD 65
Query: 69 IKFPSVEAGLP------DGCENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDC 122
F S+ GL D +++ + V K FL +L L C
Sbjct: 66 FNFESIPDGLTPMEGDGDVSQDVPTLCQSVRK----NFLKPYCELLTRLNHSTNVPPVTC 121
Query: 123 LVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLRLYEPHKKVSSDSEPFV----- 177
LV+D + AA +F +P +++ +S SL R + + E ++
Sbjct: 122 LVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCL 181
Query: 178 ---MPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESESRSYGVAVNSFYELEPAY 234
+ PG + DF++ ++ + + ++ + +N+F ELE
Sbjct: 182 ETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDV 241
Query: 235 ADHYRKALGRRAWHIGPV-SLCNRNFEDKALRGKQASI--DELECLKWLNSKQPNSVVYI 291
+ + + IGP+ SL + + L +++ ++ ECL WL SK+P SVVY+
Sbjct: 242 INALSSTIPS-IYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYV 300
Query: 292 CFGSLANFTSAQLMEIATGLEASGRNFIWVVRXXXXXXXXXXXXXWLPEGFEKRMEGKGL 351
FGS T QL+E A GL ++F+W++R F + +GL
Sbjct: 301 NFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVI----FSSEFTNEIADRGL 356
Query: 352 IIRGWAPQVLILDH 365
I W PQ +L+H
Sbjct: 357 -IASWCPQDKVLNH 369
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 25/250 (10%)
Query: 122 CLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLRLYEPHKKVSSDS----EPFV 177
CLVAD F +A D AA+ G+ L F SL S + + E +K+ E +
Sbjct: 115 CLVADAFIWFAADMAAEMGVAWLPFWTAGPNSL--STHVYIDEIREKIGVSGIQGREDEL 172
Query: 178 MPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESESRSYGVAVNSFYELEPAYADH 237
+ PG K+ L + + ++ SR+L + ++ V +NSF EL+ + +
Sbjct: 173 LNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTND 232
Query: 238 YRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLA 297
+ L + +IGP +L + + CL+WL ++P SVVYI FG++
Sbjct: 233 LKSKL-KTYLNIGPFNL---------ITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVT 282
Query: 298 NFTSAQLMEIATGLEASGRNFIWVVRXXXXXXXXXXXXXWLPEGFEKRMEGKGLIIRGWA 357
A+++ ++ LEAS FIW +R LPEGF ++ G G+++ WA
Sbjct: 283 TPPPAEVVALSEALEASRVPFIWSLRDKARVH--------LPEGFLEKTRGYGMVVP-WA 333
Query: 358 PQVLILDHEA 367
PQ +L HEA
Sbjct: 334 PQAEVLAHEA 343
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 159/375 (42%), Gaps = 51/375 (13%)
Query: 9 HVFFFPFMAHGHMIPIVDMAKLFATRG----VKASVITTPANAPYVSKSVERANELGIEL 64
+ F P GH+ ++ AKL + I P P+ ++ L +
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPG-MPFADSYIKSV--LASQP 67
Query: 65 DVKTIKFPSVEAGLPDGCENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLV 124
++ I P VE P E L + + I+ FL + + + + +K LV
Sbjct: 68 QIQLIDLPEVE---PPPQELLKS-----PEFYILTFLESLIPHVKATIKTILSNKVVGLV 119
Query: 125 ADIFFPWATDAAAKFGIPRLVF--HGTSFFSLCASNCLRLYEPHKKVSSDSE-PFVMPHF 181
D F D +FGIP +F F SL S R E +V DS+ + +
Sbjct: 120 LDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIE---EVFDDSDRDHQLLNI 176
Query: 182 PGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESES--RSYGVAVNSFYELEPAYADHYR 239
PG NQ+P V D N + +E + G+ VN+F +LE + D
Sbjct: 177 PG----ISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSID--- 229
Query: 240 KALGRRAWHIGPVSLCNRNFEDKALRGK-QASIDELE---CLKWLNSKQPNSVVYICFGS 295
AL I P+ + L+G+ +D+ + LKWL+ + SVV++CFGS
Sbjct: 230 -ALYDHDEKIPPIYAVGPLLD---LKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGS 285
Query: 296 LA-NFTSAQLMEIATGLEASGRNFIWVVRXXXXXXXXXXXXXWLPEGFEKRM--EGKGLI 352
+ +F +Q+ EIA GL+ SG F+W PEGF + M EGKG+I
Sbjct: 286 MGVSFGPSQIREIALGLKHSGVRFLW---------SNSAEKKVFPEGFLEWMELEGKGMI 336
Query: 353 IRGWAPQVLILDHEA 367
GWAPQV +L H+A
Sbjct: 337 C-GWAPQVEVLAHKA 350
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 159/375 (42%), Gaps = 51/375 (13%)
Query: 9 HVFFFPFMAHGHMIPIVDMAKLFATRG----VKASVITTPANAPYVSKSVERANELGIEL 64
+ F P GH+ ++ AKL + I P P+ ++ L +
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPG-MPFADSYIKSV--LASQP 67
Query: 65 DVKTIKFPSVEAGLPDGCENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLV 124
++ I P VE P E L + + I+ FL + + + + +K LV
Sbjct: 68 QIQLIDLPEVE---PPPQELLKS-----PEFYILTFLESLIPHVKATIKTILSNKVVGLV 119
Query: 125 ADIFFPWATDAAAKFGIPRLVF--HGTSFFSLCASNCLRLYEPHKKVSSDSE-PFVMPHF 181
D F D +FGIP +F F SL S R E +V DS+ + +
Sbjct: 120 LDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIE---EVFDDSDRDHQLLNI 176
Query: 182 PGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESES--RSYGVAVNSFYELEPAYADHYR 239
PG NQ+P V D N + +E + G+ VN+F +LE + D
Sbjct: 177 PG----ISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSID--- 229
Query: 240 KALGRRAWHIGPVSLCNRNFEDKALRGK-QASIDELE---CLKWLNSKQPNSVVYICFGS 295
AL I P+ + L+G+ +D+ + LKWL+ + SVV++CFGS
Sbjct: 230 -ALYDHDEKIPPIYAVGPLLD---LKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGS 285
Query: 296 LA-NFTSAQLMEIATGLEASGRNFIWVVRXXXXXXXXXXXXXWLPEGFEKRM--EGKGLI 352
+ +F +Q+ EIA GL+ SG F+W PEGF + M EGKG+I
Sbjct: 286 MGVSFGPSQIREIALGLKHSGVRFLW---------SNSAEKKVFPEGFLEWMELEGKGMI 336
Query: 353 IRGWAPQVLILDHEA 367
GWAPQV +L H+A
Sbjct: 337 C-GWAPQVEVLAHKA 350
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDV 66
Q H+ F HGH+ P + + A RG + + +TTP A V + G E+ +
Sbjct: 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAA-------GAEVVL 56
Query: 67 KTIKFPSVEAGLPDGCENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVAD 126
+F + +P+ + DA T +L + ++ + E+ L D+ PD +V D
Sbjct: 57 YKSEFDTFH--VPEVVKQEDAET-----QLHLVYVRENVAILRAAEEALGDNPPDLVVYD 109
Query: 127 IF 128
+F
Sbjct: 110 VF 111
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 15/119 (12%)
Query: 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKT 68
H+ FF HGH+ P + + + RG + S T A V+ A + D
Sbjct: 14 HISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFA----AQVKAAGATPVVYDSIL 69
Query: 69 IKFPSVEAGLPDGCENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADI 127
K + E P+ E+ + FL ++ LE D +PD +V DI
Sbjct: 70 PKESNPEESWPEDQESAMGL-----------FLDEAVRVLPQLEDAYADDRPDLIVYDI 117
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 161 RLYEPHKKVSSDSEPF----VMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESE 216
R+ K+ + PF VM H LT LPD KQD D + RL+ T+ S+
Sbjct: 23 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 82
Query: 217 SRSY 220
+++
Sbjct: 83 EQNH 86
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 161 RLYEPHKKVSSDSEPF----VMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESE 216
R+ K+ + PF VM H LT LPD KQD D + RL+ T+ S+
Sbjct: 21 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 80
Query: 217 SRSYGVAVNSFYELEPAYAD--HYRKALGR 244
+++ + + E A D HY G
Sbjct: 81 EQNHLLIASVQLPSEDAQFDGSHYDNEKGE 110
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 161 RLYEPHKKVSSDSEPF----VMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESE 216
R+ K+ + PF VM H LT LPD KQD D + RL+ T+ S+
Sbjct: 19 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 78
Query: 217 SRSYGVAVNSFYELEPAYAD--HYRKALGR 244
+++ + + E A D HY G
Sbjct: 79 EQNHLLIASVQLPSEDAQFDGSHYDNEKGE 108
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 430
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVER 56
M ++ H+ F AHGH+ P +++ + RG + + P A V+ + R
Sbjct: 1 MTTQTTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPR 56
>pdb|2CFM|A Chain A, Atp-Dependent Dna Ligase From Pyrococcus Furiosus
Length = 561
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 3 SKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRG--VKASVITTPANAPYVSKSVERANEL 60
K+P H+ F P++ G + P D +L +KA T +A + +SV+ +L
Sbjct: 31 KKVPDDHLEFIPYLILGEVFPEWDERELGVGEKLLIKAVAXATGIDAKEIEESVKDTGDL 90
Query: 61 G 61
G
Sbjct: 91 G 91
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 96 LIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAK----------FGIPRLV 145
L++K+ T ++Q+ +EQ++ H+P L P+ TDA FG+P V
Sbjct: 294 LMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPY-TDAVIHEIQRLGDLIPFGVPHTV 352
Query: 146 FHGTSF 151
T F
Sbjct: 353 TKDTQF 358
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 96 LIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAK----------FGIPRLV 145
L++K+ T ++Q+ +EQ++ H+P L P+ TDA FG+P V
Sbjct: 294 LMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPY-TDAVIHEIQRLGDLIPFGVPHTV 352
Query: 146 FHGTSF 151
T F
Sbjct: 353 TKDTQF 358
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 96 LIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAK----------FGIPRLV 145
L++K+ T ++Q+ +EQ++ H+P L P+ TDA FG+P V
Sbjct: 294 LMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPY-TDAVIHEIQRLGDLIPFGVPHTV 352
Query: 146 FHGTSF 151
T F
Sbjct: 353 TKDTQF 358
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 96 LIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAK----------FGIPRLV 145
L++K+ T ++Q+ +EQ++ H+P L P+ TDA FG+P V
Sbjct: 294 LMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPY-TDAVIHEIQRLGDLIPFGVPHTV 352
Query: 146 FHGTSF 151
T F
Sbjct: 353 TKDTQF 358
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 96 LIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAK----------FGIPRLV 145
L++K+ T ++Q+ +EQ++ H+P L P+ TDA FG+P V
Sbjct: 294 LMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPY-TDAVIHEIQRLGDLIPFGVPHTV 352
Query: 146 FHGTSF 151
T F
Sbjct: 353 TKDTQF 358
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine
Hydrolase 2bfq_3, Northeast Structural Genomics
Consortium (Nesg) Target Or248
Length = 199
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 54 VERANELGIELDVKTIKFPSVEAGLPDGCENLDAITNEVNKELIVKFLGATTK 106
+E+A E+G+E +I FP+V AG+ GC+ + E + E + F G+ K
Sbjct: 124 LEKAEEMGVE----SIAFPAVSAGIY-GCDAEKVV--ETSLEAVKNFKGSAVK 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,518,182
Number of Sequences: 62578
Number of extensions: 411960
Number of successful extensions: 1126
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1094
Number of HSP's gapped (non-prelim): 24
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)