Query 041444
Match_columns 367
No_of_seqs 189 out of 1359
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 07:08:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 4.9E-55 1.1E-59 408.4 35.5 355 5-367 6-362 (491)
2 PLN02670 transferase, transfer 100.0 8.9E-54 1.9E-58 398.1 33.6 346 5-367 4-357 (472)
3 PLN02863 UDP-glucoronosyl/UDP- 100.0 4.7E-53 1E-57 395.9 35.0 345 5-367 7-361 (477)
4 PLN02208 glycosyltransferase f 100.0 3.9E-53 8.4E-58 392.8 32.3 326 6-367 3-329 (442)
5 PLN00414 glycosyltransferase f 100.0 1.1E-52 2.3E-57 390.3 32.9 325 6-367 3-330 (446)
6 PLN02764 glycosyltransferase f 100.0 1.3E-52 2.8E-57 387.3 32.9 329 6-367 4-335 (453)
7 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.4E-52 3.1E-57 390.0 33.2 329 1-367 1-342 (451)
8 PLN02992 coniferyl-alcohol glu 100.0 1.3E-52 2.7E-57 390.7 32.8 330 6-367 4-356 (481)
9 PLN03007 UDP-glucosyltransfera 100.0 3.5E-51 7.5E-56 386.4 37.0 354 7-367 5-363 (482)
10 PLN03015 UDP-glucosyl transfer 100.0 1.6E-51 3.4E-56 381.2 33.1 331 6-367 2-353 (470)
11 PLN03004 UDP-glycosyltransfera 100.0 2.4E-51 5.2E-56 380.3 32.1 339 5-367 1-352 (451)
12 PLN02207 UDP-glycosyltransfera 100.0 2.1E-50 4.6E-55 375.1 33.3 336 5-367 1-350 (468)
13 PLN00164 glucosyltransferase; 100.0 3.1E-50 6.8E-55 378.0 34.0 332 6-367 2-357 (480)
14 PLN02555 limonoid glucosyltran 100.0 3.7E-50 8.1E-55 375.1 33.3 343 1-367 1-355 (480)
15 PLN02152 indole-3-acetate beta 100.0 4.6E-50 1E-54 372.1 31.6 329 6-367 2-345 (455)
16 PLN02562 UDP-glycosyltransfera 100.0 1.1E-49 2.4E-54 371.7 33.5 324 5-367 4-346 (448)
17 PLN02173 UDP-glucosyl transfer 100.0 1.7E-49 3.6E-54 367.8 31.4 316 6-367 4-335 (449)
18 PLN02210 UDP-glucosyl transfer 100.0 2.1E-48 4.5E-53 363.5 33.1 330 1-367 1-342 (456)
19 PLN02167 UDP-glycosyltransfera 100.0 5.2E-48 1.1E-52 363.8 33.1 341 5-367 1-358 (475)
20 PLN02554 UDP-glycosyltransfera 100.0 1.2E-47 2.5E-52 362.0 32.9 334 7-367 2-360 (481)
21 PLN02448 UDP-glycosyltransfera 100.0 1.4E-45 3E-50 346.7 31.7 323 5-367 8-341 (459)
22 PHA03392 egt ecdysteroid UDP-g 100.0 2.7E-32 5.9E-37 258.4 21.7 305 6-367 19-364 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 3.3E-34 7.3E-39 275.4 -0.9 302 8-367 1-341 (500)
24 KOG1192 UDP-glucuronosyl and U 100.0 1.1E-28 2.4E-33 237.2 9.2 312 7-367 5-354 (496)
25 TIGR01426 MGT glycosyltransfer 99.9 2.5E-23 5.5E-28 194.0 19.5 280 13-366 1-292 (392)
26 cd03784 GT1_Gtf_like This fami 99.9 9.4E-23 2E-27 190.9 16.9 294 8-366 1-305 (401)
27 COG1819 Glycosyl transferases, 99.7 2.8E-16 6.2E-21 145.5 13.8 289 7-366 1-301 (406)
28 PF03033 Glyco_transf_28: Glyc 99.3 1.2E-11 2.5E-16 97.9 6.5 121 10-151 1-132 (139)
29 PRK12446 undecaprenyldiphospho 98.7 7.2E-06 1.6E-10 75.2 21.9 117 8-146 2-120 (352)
30 PF13528 Glyco_trans_1_3: Glyc 98.5 1.1E-06 2.4E-11 79.7 12.2 122 8-149 1-123 (318)
31 TIGR00661 MJ1255 conserved hyp 98.2 1.3E-05 2.8E-10 72.7 10.5 116 9-148 1-121 (321)
32 COG0707 MurG UDP-N-acetylgluco 97.8 0.00034 7.4E-09 63.8 12.7 120 9-150 2-124 (357)
33 cd03785 GT1_MurG MurG is an N- 97.6 0.0012 2.7E-08 60.5 13.2 116 9-146 1-118 (350)
34 TIGR01133 murG undecaprenyldip 97.5 0.0025 5.3E-08 58.4 13.5 116 9-146 2-119 (348)
35 PRK00726 murG undecaprenyldiph 97.5 0.0033 7.1E-08 58.0 14.0 117 8-146 2-120 (357)
36 TIGR00215 lpxB lipid-A-disacch 97.4 0.0009 1.9E-08 62.3 9.2 112 7-146 5-119 (385)
37 COG4671 Predicted glycosyl tra 96.8 0.0064 1.4E-07 54.0 8.3 105 7-131 9-118 (400)
38 cd03816 GT1_ALG1_like This fam 96.7 0.04 8.7E-07 51.9 13.9 121 6-146 2-127 (415)
39 PLN02871 UDP-sulfoquinovose:DA 96.7 0.62 1.3E-05 44.7 24.2 41 5-45 56-101 (465)
40 PF13477 Glyco_trans_4_2: Glyc 96.6 0.02 4.4E-07 44.6 9.1 100 9-145 1-104 (139)
41 PRK00025 lpxB lipid-A-disaccha 96.5 0.017 3.7E-07 53.7 9.2 112 8-147 2-116 (380)
42 cd03818 GT1_ExpC_like This fam 96.2 0.12 2.6E-06 48.4 13.4 112 9-148 1-117 (396)
43 PF04007 DUF354: Protein of un 96.2 0.069 1.5E-06 48.4 11.1 104 19-151 11-114 (335)
44 PF13579 Glyco_trans_4_4: Glyc 96.0 0.017 3.8E-07 45.8 6.0 94 22-146 5-102 (160)
45 cd03823 GT1_ExpE7_like This fa 95.7 0.14 3.1E-06 46.4 11.3 108 18-146 15-126 (359)
46 TIGR03590 PseG pseudaminic aci 95.7 0.15 3.3E-06 45.2 10.9 95 17-146 13-109 (279)
47 PRK13609 diacylglycerol glucos 95.6 0.052 1.1E-06 50.5 8.0 39 6-44 3-42 (380)
48 PRK10307 putative glycosyl tra 95.5 0.19 4.1E-06 47.2 11.5 37 9-45 2-42 (412)
49 cd03794 GT1_wbuB_like This fam 95.4 0.19 4.1E-06 46.0 11.3 38 9-46 1-42 (394)
50 cd04962 GT1_like_5 This family 95.0 0.23 5E-06 45.7 10.3 37 9-45 2-39 (371)
51 COG3980 spsG Spore coat polysa 94.7 0.16 3.4E-06 44.0 7.6 98 8-152 1-105 (318)
52 PF06722 DUF1205: Protein of u 94.7 0.029 6.2E-07 40.8 2.7 63 275-342 29-96 (97)
53 cd03814 GT1_like_2 This family 94.7 0.072 1.6E-06 48.5 6.0 28 18-45 14-41 (364)
54 cd03800 GT1_Sucrose_synthase T 94.6 0.15 3.3E-06 47.3 8.3 28 18-45 21-48 (398)
55 cd03805 GT1_ALG2_like This fam 94.3 0.88 1.9E-05 42.2 12.6 36 9-44 2-39 (392)
56 cd03817 GT1_UGDG_like This fam 94.1 0.44 9.4E-06 43.3 9.9 31 15-45 11-41 (374)
57 cd03808 GT1_cap1E_like This fa 94.0 0.46 1E-05 42.8 9.7 38 9-46 1-38 (359)
58 PF01975 SurE: Survival protei 93.5 0.74 1.6E-05 38.3 9.1 38 9-47 2-39 (196)
59 cd03796 GT1_PIG-A_like This fa 93.3 0.42 9.1E-06 44.7 8.4 101 19-146 15-119 (398)
60 PF12000 Glyco_trans_4_3: Gkyc 93.2 1.3 2.9E-05 35.8 9.9 41 107-147 53-95 (171)
61 TIGR02470 sucr_synth sucrose s 92.7 2.7 5.8E-05 42.7 13.2 29 118-146 384-414 (784)
62 cd03802 GT1_AviGT4_like This f 92.5 0.96 2.1E-05 40.7 9.4 37 9-45 2-46 (335)
63 TIGR02472 sucr_P_syn_N sucrose 91.8 1.4 3.1E-05 41.8 10.0 26 19-44 27-54 (439)
64 COG1817 Uncharacterized protei 91.8 3.3 7.2E-05 36.7 11.0 107 18-152 10-116 (346)
65 cd03819 GT1_WavL_like This fam 91.6 1.5 3.3E-05 39.8 9.6 98 18-148 10-109 (355)
66 PF08660 Alg14: Oligosaccharid 91.6 5.7 0.00012 32.2 11.8 34 11-45 2-37 (170)
67 PLN02275 transferase, transfer 90.9 9.1 0.0002 35.4 14.2 38 8-45 5-43 (371)
68 PRK02261 methylaspartate mutas 90.8 1.1 2.4E-05 35.0 6.7 49 5-53 1-49 (137)
69 cd03801 GT1_YqgM_like This fam 90.7 2.4 5.2E-05 38.1 10.0 29 18-46 14-42 (374)
70 cd03812 GT1_CapH_like This fam 90.2 1.9 4.1E-05 39.2 9.0 37 10-46 2-40 (358)
71 PLN00142 sucrose synthase 89.9 2.7 5.7E-05 42.9 10.0 29 118-146 407-437 (815)
72 TIGR02468 sucrsPsyn_pln sucros 89.8 4 8.7E-05 42.8 11.4 26 19-44 196-223 (1050)
73 cd04955 GT1_like_6 This family 89.1 2.9 6.3E-05 38.0 9.3 28 18-45 15-42 (363)
74 cd03820 GT1_amsD_like This fam 88.8 2.4 5.1E-05 37.9 8.4 29 18-46 13-41 (348)
75 cd03811 GT1_WabH_like This fam 88.8 1.6 3.4E-05 39.1 7.2 37 9-45 1-39 (353)
76 cd02067 B12-binding B12 bindin 88.5 7.9 0.00017 29.1 9.9 37 9-45 1-37 (119)
77 TIGR03449 mycothiol_MshA UDP-N 88.4 6 0.00013 36.9 11.1 28 18-45 20-47 (405)
78 COG1703 ArgK Putative periplas 87.8 3.1 6.8E-05 36.7 7.8 40 7-46 51-90 (323)
79 cd03795 GT1_like_4 This family 87.1 11 0.00024 34.0 11.9 30 17-46 13-42 (357)
80 COG0496 SurE Predicted acid ph 86.7 5.8 0.00013 34.2 8.7 99 23-149 15-126 (252)
81 PRK05749 3-deoxy-D-manno-octul 86.4 3.3 7.2E-05 39.1 8.1 30 8-37 50-79 (425)
82 PLN02846 digalactosyldiacylgly 83.9 1.6 3.5E-05 41.5 4.6 41 5-45 2-47 (462)
83 TIGR00236 wecB UDP-N-acetylglu 83.7 9.8 0.00021 35.0 9.7 111 9-146 2-116 (365)
84 PRK13608 diacylglycerol glucos 83.4 9.8 0.00021 35.5 9.7 35 7-41 5-43 (391)
85 PF13439 Glyco_transf_4: Glyco 83.4 1.3 2.7E-05 35.5 3.3 28 18-45 12-39 (177)
86 TIGR02370 pyl_corrinoid methyl 83.1 14 0.00031 30.8 9.5 48 6-53 83-130 (197)
87 PF02951 GSH-S_N: Prokaryotic 83.0 2.2 4.8E-05 32.2 4.2 37 9-45 2-41 (119)
88 PRK12342 hypothetical protein; 82.8 21 0.00046 31.1 10.6 36 114-149 104-145 (254)
89 cd03798 GT1_wlbH_like This fam 82.5 17 0.00036 32.6 10.8 30 17-46 13-42 (377)
90 cd02070 corrinoid_protein_B12- 82.5 22 0.00047 29.7 10.5 47 6-52 81-127 (201)
91 TIGR03568 NeuC_NnaA UDP-N-acet 80.3 7 0.00015 36.1 7.3 116 13-148 5-125 (365)
92 PRK00654 glgA glycogen synthas 80.0 2.7 6E-05 40.3 4.7 37 9-45 2-44 (466)
93 cd03786 GT1_UDP-GlcNAc_2-Epime 79.9 12 0.00027 34.1 8.9 33 13-45 4-37 (363)
94 cd04951 GT1_WbdM_like This fam 79.2 2.2 4.8E-05 38.7 3.7 35 10-44 2-38 (360)
95 TIGR03492 conserved hypothetic 79.1 13 0.00029 34.7 8.9 31 15-45 4-39 (396)
96 cd03825 GT1_wcfI_like This fam 78.9 3 6.5E-05 38.0 4.5 37 9-45 2-40 (365)
97 cd03792 GT1_Trehalose_phosphor 78.8 18 0.0004 33.2 9.8 36 10-45 2-39 (372)
98 PRK03359 putative electron tra 78.7 34 0.00074 29.8 10.6 36 114-149 107-148 (256)
99 COG0801 FolK 7,8-dihydro-6-hyd 78.7 4.6 0.0001 32.2 4.8 35 288-322 3-37 (160)
100 cd03806 GT1_ALG11_like This fa 78.6 22 0.00047 33.6 10.3 29 19-47 15-45 (419)
101 PRK13931 stationary phase surv 78.2 25 0.00055 30.7 9.6 38 111-148 79-129 (261)
102 PRK13932 stationary phase surv 77.6 29 0.00063 30.2 9.8 39 7-47 5-43 (257)
103 PRK13934 stationary phase surv 77.6 27 0.00059 30.5 9.6 25 22-47 14-38 (266)
104 TIGR00087 surE 5'/3'-nucleotid 76.9 30 0.00066 29.9 9.7 24 23-47 15-38 (244)
105 cd03821 GT1_Bme6_like This fam 76.1 3.9 8.4E-05 37.0 4.4 30 17-46 13-42 (375)
106 TIGR03088 stp2 sugar transfera 76.1 40 0.00087 30.9 11.2 104 8-145 2-108 (374)
107 TIGR03087 stp1 sugar transfera 75.4 2.5 5.3E-05 39.5 2.9 32 13-45 8-40 (397)
108 cd03807 GT1_WbnK_like This fam 75.4 36 0.00077 30.4 10.6 30 16-45 10-39 (365)
109 PF02310 B12-binding: B12 bind 75.1 6.4 0.00014 29.5 4.7 36 9-44 2-37 (121)
110 TIGR02193 heptsyl_trn_I lipopo 74.9 9.6 0.00021 34.3 6.6 39 9-47 1-41 (319)
111 PRK13935 stationary phase surv 74.8 37 0.00081 29.5 9.7 23 24-47 16-38 (253)
112 COG2910 Putative NADH-flavin r 73.6 6.7 0.00015 32.1 4.4 32 9-44 2-33 (211)
113 TIGR02655 circ_KaiC circadian 73.5 21 0.00046 34.5 8.7 47 7-53 263-309 (484)
114 TIGR02095 glgA glycogen/starch 73.2 5.6 0.00012 38.2 4.8 37 9-45 2-44 (473)
115 PRK13933 stationary phase surv 72.8 49 0.0011 28.8 9.9 23 24-47 16-38 (253)
116 COG1484 DnaC DNA replication p 72.4 4.7 0.0001 35.1 3.7 43 6-48 104-146 (254)
117 PRK01021 lpxB lipid-A-disaccha 72.2 1.1E+02 0.0023 30.4 13.6 43 108-150 299-346 (608)
118 COG2894 MinD Septum formation 71.9 27 0.00058 29.7 7.6 40 8-47 2-43 (272)
119 COG3914 Spy Predicted O-linked 71.7 7.9 0.00017 37.4 5.1 42 284-325 427-468 (620)
120 PF02441 Flavoprotein: Flavopr 71.6 8.2 0.00018 29.6 4.6 36 9-45 2-37 (129)
121 cd03791 GT1_Glycogen_synthase_ 71.2 5.9 0.00013 38.0 4.5 27 19-45 17-43 (476)
122 TIGR03878 thermo_KaiC_2 KaiC d 70.7 72 0.0016 27.8 12.0 39 8-46 37-75 (259)
123 cd01124 KaiC KaiC is a circadi 70.6 26 0.00056 28.5 7.7 42 10-51 2-43 (187)
124 PRK00346 surE 5'(3')-nucleotid 70.2 42 0.00092 29.1 9.0 24 23-47 15-38 (250)
125 TIGR02201 heptsyl_trn_III lipo 69.8 50 0.0011 30.1 10.1 39 9-47 1-41 (344)
126 PRK09922 UDP-D-galactose:(gluc 69.0 39 0.00085 30.9 9.3 37 9-45 2-43 (359)
127 cd02069 methionine_synthase_B1 68.8 19 0.00042 30.4 6.5 48 6-53 87-134 (213)
128 PLN02605 monogalactosyldiacylg 68.7 53 0.0011 30.5 10.1 31 11-41 3-36 (382)
129 PRK08760 replicative DNA helic 68.6 75 0.0016 30.6 11.2 40 9-48 231-271 (476)
130 PRK05595 replicative DNA helic 68.5 85 0.0018 29.9 11.6 40 9-48 203-243 (444)
131 cd00984 DnaB_C DnaB helicase C 67.5 78 0.0017 27.0 11.6 40 9-48 15-55 (242)
132 cd01635 Glycosyltransferase_GT 66.8 8.6 0.00019 31.9 4.2 26 17-42 12-37 (229)
133 COG2874 FlaH Predicted ATPases 66.7 17 0.00038 30.6 5.6 38 10-47 31-68 (235)
134 cd05844 GT1_like_7 Glycosyltra 66.1 51 0.0011 29.9 9.5 37 110-146 73-111 (367)
135 PRK09165 replicative DNA helic 65.3 1E+02 0.0023 29.9 11.6 41 9-49 219-274 (497)
136 cd02071 MM_CoA_mut_B12_BD meth 65.2 22 0.00049 26.9 5.7 41 9-49 1-41 (122)
137 TIGR00715 precor6x_red precorr 65.0 41 0.00088 29.4 7.9 37 111-147 57-99 (256)
138 cd01840 SGNH_hydrolase_yrhL_li 64.9 18 0.0004 28.4 5.4 47 276-323 41-87 (150)
139 COG1066 Sms Predicted ATP-depe 64.5 7 0.00015 36.2 3.2 42 9-51 95-136 (456)
140 PRK04328 hypothetical protein; 63.8 98 0.0021 26.8 10.9 44 7-50 23-66 (249)
141 PRK06321 replicative DNA helic 63.8 1.4E+02 0.0031 28.7 12.3 40 9-48 228-268 (472)
142 PRK10422 lipopolysaccharide co 63.7 60 0.0013 29.7 9.3 42 6-47 4-47 (352)
143 PF04127 DFP: DNA / pantothena 63.7 7.7 0.00017 32.0 3.1 21 24-44 32-52 (185)
144 cd00561 CobA_CobO_BtuR ATP:cor 63.6 75 0.0016 25.4 11.3 35 8-42 3-37 (159)
145 PRK07773 replicative DNA helic 63.4 1.2E+02 0.0026 32.0 12.3 41 9-49 219-260 (886)
146 TIGR03600 phage_DnaB phage rep 63.3 1.2E+02 0.0027 28.5 11.6 41 9-49 196-237 (421)
147 PF04244 DPRP: Deoxyribodipyri 62.8 8.6 0.00019 32.8 3.3 26 20-45 47-72 (224)
148 PRK06067 flagellar accessory p 62.5 34 0.00074 29.2 7.1 42 7-48 25-66 (234)
149 PF12146 Hydrolase_4: Putative 62.5 25 0.00053 24.3 5.0 34 8-41 16-49 (79)
150 PRK08305 spoVFB dipicolinate s 62.2 14 0.0003 30.7 4.3 39 6-45 4-43 (196)
151 PF01210 NAD_Gly3P_dh_N: NAD-d 62.1 7.2 0.00016 31.1 2.6 32 9-45 1-32 (157)
152 PRK14099 glycogen synthase; Pr 61.9 14 0.00031 35.7 5.0 40 6-45 2-47 (485)
153 PF04413 Glycos_transf_N: 3-De 61.8 54 0.0012 27.0 7.8 99 9-147 22-125 (186)
154 TIGR00665 DnaB replicative DNA 61.7 98 0.0021 29.3 10.6 41 9-49 197-238 (434)
155 PRK14098 glycogen synthase; Pr 60.9 16 0.00035 35.3 5.2 38 8-45 6-49 (489)
156 cd01121 Sms Sms (bacterial rad 60.8 1.2E+02 0.0027 28.1 10.7 41 9-49 84-124 (372)
157 TIGR03880 KaiC_arch_3 KaiC dom 60.5 62 0.0013 27.3 8.3 44 8-51 17-60 (224)
158 PRK08506 replicative DNA helic 60.3 1.7E+02 0.0036 28.3 12.5 40 9-48 194-233 (472)
159 COG0052 RpsB Ribosomal protein 58.2 19 0.00042 30.8 4.5 33 119-151 156-190 (252)
160 PRK05636 replicative DNA helic 58.0 1E+02 0.0023 29.9 10.1 38 10-47 268-306 (505)
161 PF06925 MGDG_synth: Monogalac 57.2 23 0.00049 28.6 4.8 43 107-149 77-125 (169)
162 PRK14092 2-amino-4-hydroxy-6-h 57.0 26 0.00057 28.1 5.0 33 284-316 5-37 (163)
163 COG0541 Ffh Signal recognition 57.0 1.8E+02 0.0038 27.6 10.7 42 7-48 100-141 (451)
164 cd03799 GT1_amsK_like This is 56.5 20 0.00044 32.2 5.0 37 9-45 1-38 (355)
165 PLN02316 synthase/transferase 56.4 23 0.00051 37.4 5.7 41 6-46 586-632 (1036)
166 PF07355 GRDB: Glycine/sarcosi 56.1 27 0.00058 31.7 5.3 41 106-146 67-117 (349)
167 PF08323 Glyco_transf_5: Starc 55.2 12 0.00027 32.3 3.1 27 19-45 17-43 (245)
168 TIGR02852 spore_dpaB dipicolin 55.0 18 0.00039 29.8 3.8 37 9-45 2-38 (187)
169 COG1618 Predicted nucleotide k 54.7 67 0.0015 25.9 6.7 39 6-44 4-43 (179)
170 COG1797 CobB Cobyrinic acid a, 51.9 40 0.00087 31.7 5.8 28 12-39 6-33 (451)
171 PF13450 NAD_binding_8: NAD(P) 51.0 20 0.00043 23.9 2.9 20 25-44 9-28 (68)
172 TIGR02015 BchY chlorophyllide 50.4 1.9E+02 0.0041 27.4 10.4 32 8-44 286-317 (422)
173 TIGR02149 glgA_Coryne glycogen 50.2 1.6E+02 0.0035 26.9 10.0 35 9-44 2-41 (388)
174 PF02350 Epimerase_2: UDP-N-ac 49.8 23 0.0005 32.5 4.1 40 107-146 55-97 (346)
175 cd03822 GT1_ecORF704_like This 49.8 23 0.00051 31.9 4.2 36 9-44 1-39 (366)
176 PRK07313 phosphopantothenoylcy 49.5 25 0.00055 28.8 3.9 38 8-46 2-39 (182)
177 PF09314 DUF1972: Domain of un 49.2 33 0.00072 28.3 4.5 39 8-46 2-45 (185)
178 TIGR03877 thermo_KaiC_1 KaiC d 48.6 1.2E+02 0.0026 25.9 8.2 44 7-50 21-64 (237)
179 PRK09219 xanthine phosphoribos 48.4 56 0.0012 27.0 5.7 41 108-148 39-81 (189)
180 PF03853 YjeF_N: YjeF-related 47.7 46 0.00099 26.9 5.1 36 6-42 24-59 (169)
181 COG1435 Tdk Thymidine kinase [ 47.6 1.7E+02 0.0036 24.5 8.9 39 7-45 3-42 (201)
182 PLN02939 transferase, transfer 47.5 40 0.00086 35.3 5.6 41 5-45 479-525 (977)
183 PF02684 LpxB: Lipid-A-disacch 46.2 99 0.0021 28.7 7.6 40 108-147 71-115 (373)
184 TIGR01498 folK 2-amino-4-hydro 45.9 21 0.00045 27.4 2.7 30 289-318 1-30 (127)
185 cd02065 B12-binding_like B12 b 45.7 76 0.0016 23.6 5.9 36 10-45 2-37 (125)
186 COG2185 Sbm Methylmalonyl-CoA 45.4 49 0.0011 25.9 4.6 41 6-46 11-51 (143)
187 PRK00039 ruvC Holliday junctio 44.5 69 0.0015 25.8 5.6 46 105-150 47-107 (164)
188 TIGR01918 various_sel_PB selen 44.4 52 0.0011 30.8 5.3 41 106-146 63-113 (431)
189 PF05728 UPF0227: Uncharacteri 44.4 56 0.0012 27.0 5.2 43 110-152 48-93 (187)
190 TIGR01917 gly_red_sel_B glycin 44.4 52 0.0011 30.8 5.3 41 106-146 63-113 (431)
191 COG1519 KdtA 3-deoxy-D-manno-o 44.2 2.8E+02 0.0061 26.1 18.4 98 9-146 50-152 (419)
192 PRK05920 aromatic acid decarbo 44.0 44 0.00096 28.0 4.5 38 7-45 3-40 (204)
193 COG0467 RAD55 RecA-superfamily 43.8 60 0.0013 28.2 5.7 47 6-52 22-68 (260)
194 PRK09302 circadian clock prote 43.4 1.2E+02 0.0026 29.5 8.1 45 7-51 273-317 (509)
195 PRK14089 ipid-A-disaccharide s 43.4 1.1E+02 0.0024 28.1 7.4 34 118-151 75-113 (347)
196 PRK09620 hypothetical protein; 43.3 26 0.00056 30.0 3.1 20 25-44 33-52 (229)
197 COG0503 Apt Adenine/guanine ph 43.2 80 0.0017 25.8 5.9 37 110-146 44-82 (179)
198 COG4088 Predicted nucleotide k 42.9 35 0.00076 28.7 3.6 35 9-43 3-37 (261)
199 PF03205 MobB: Molybdopterin g 42.8 56 0.0012 25.5 4.7 35 8-42 1-35 (140)
200 PRK06719 precorrin-2 dehydroge 42.6 47 0.001 26.5 4.4 34 6-44 12-45 (157)
201 TIGR00421 ubiX_pad polyprenyl 42.5 31 0.00067 28.3 3.4 36 10-46 2-37 (181)
202 TIGR02113 coaC_strep phosphopa 42.4 44 0.00095 27.3 4.2 36 9-45 2-37 (177)
203 PF00070 Pyr_redox: Pyridine n 42.1 37 0.00081 23.2 3.3 24 23-46 10-33 (80)
204 cd02034 CooC The accessory pro 42.0 67 0.0015 24.0 4.9 37 9-45 1-37 (116)
205 cd01981 Pchlide_reductase_B Pc 42.0 45 0.00097 31.6 4.9 35 110-147 361-395 (430)
206 PRK04940 hypothetical protein; 41.6 78 0.0017 26.0 5.5 33 119-151 60-93 (180)
207 PLN00016 RNA-binding protein; 41.1 35 0.00076 31.6 4.0 38 7-44 52-89 (378)
208 PRK13768 GTPase; Provisional 40.8 1.2E+02 0.0026 26.3 7.0 38 9-46 4-41 (253)
209 PRK06732 phosphopantothenate-- 40.6 28 0.00061 29.8 3.0 20 24-43 29-48 (229)
210 PRK06849 hypothetical protein; 40.4 63 0.0014 30.1 5.5 36 6-45 3-38 (389)
211 COG2120 Uncharacterized protei 40.3 53 0.0011 28.3 4.6 38 5-43 8-46 (237)
212 COG0381 WecB UDP-N-acetylgluco 39.8 78 0.0017 29.3 5.7 118 7-149 3-125 (383)
213 PRK06249 2-dehydropantoate 2-r 39.8 41 0.00088 30.3 4.1 34 6-44 4-37 (313)
214 PLN02293 adenine phosphoribosy 39.6 1.1E+02 0.0023 25.3 6.1 41 106-146 49-91 (187)
215 PF01695 IstB_IS21: IstB-like 38.8 72 0.0016 26.0 5.0 38 7-44 47-84 (178)
216 PRK04020 rps2P 30S ribosomal p 38.7 48 0.001 27.8 3.9 33 119-151 114-148 (204)
217 PRK07666 fabG 3-ketoacyl-(acyl 38.7 82 0.0018 26.6 5.7 40 1-44 1-40 (239)
218 TIGR01012 Sa_S2_E_A ribosomal 38.5 49 0.0011 27.5 3.9 33 119-151 108-142 (196)
219 PRK07236 hypothetical protein; 38.3 64 0.0014 29.9 5.2 37 3-44 2-38 (386)
220 PF14626 RNase_Zc3h12a_2: Zc3h 38.0 45 0.00098 25.0 3.2 25 21-45 9-33 (122)
221 CHL00076 chlB photochlorophyll 37.5 61 0.0013 31.6 5.1 35 110-147 365-399 (513)
222 cd03412 CbiK_N Anaerobic cobal 37.5 61 0.0013 24.8 4.1 38 287-324 2-41 (127)
223 TIGR00064 ftsY signal recognit 37.2 93 0.002 27.4 5.8 39 8-46 73-111 (272)
224 PRK05986 cob(I)alamin adenolsy 36.6 97 0.0021 25.7 5.4 39 6-44 21-59 (191)
225 PLN02949 transferase, transfer 36.4 4E+02 0.0086 25.6 11.8 128 6-150 32-170 (463)
226 TIGR01278 DPOR_BchB light-inde 36.3 63 0.0014 31.5 5.0 35 110-147 355-389 (511)
227 PF02571 CbiJ: Precorrin-6x re 36.2 2.8E+02 0.0061 24.1 8.5 36 111-146 186-225 (249)
228 PRK08939 primosomal protein Dn 36.1 43 0.00092 30.1 3.5 38 7-44 156-193 (306)
229 cd01983 Fer4_NifH The Fer4_Nif 35.8 94 0.002 21.4 4.8 33 10-42 2-34 (99)
230 PRK13982 bifunctional SbtC-lik 35.6 35 0.00076 32.7 3.0 39 6-44 255-305 (475)
231 PRK13604 luxD acyl transferase 35.5 82 0.0018 28.3 5.1 35 7-41 36-70 (307)
232 KOG1838 Alpha/beta hydrolase [ 35.4 1E+02 0.0022 28.9 5.8 39 7-45 125-164 (409)
233 KOG1014 17 beta-hydroxysteroid 35.2 36 0.00077 30.4 2.8 31 9-42 50-80 (312)
234 PRK02910 light-independent pro 35.1 71 0.0015 31.2 5.1 35 110-147 353-387 (519)
235 TIGR00176 mobB molybdopterin-g 35.0 83 0.0018 25.0 4.7 35 10-44 2-36 (155)
236 cd02032 Bchl_like This family 34.6 73 0.0016 27.8 4.8 37 9-45 2-38 (267)
237 TIGR01744 XPRTase xanthine pho 34.6 1.2E+02 0.0026 25.1 5.7 39 109-147 40-80 (191)
238 PF03720 UDPG_MGDP_dh_C: UDP-g 34.6 50 0.0011 24.2 3.2 23 22-44 17-39 (106)
239 PRK06835 DNA replication prote 34.6 74 0.0016 29.0 4.8 38 7-44 183-220 (329)
240 PRK10239 2-amino-4-hydroxy-6-h 34.5 44 0.00095 26.8 2.9 28 288-315 3-30 (159)
241 TIGR02699 archaeo_AfpA archaeo 34.3 60 0.0013 26.4 3.8 30 18-47 9-40 (174)
242 cd01965 Nitrogenase_MoFe_beta_ 34.1 68 0.0015 30.4 4.7 34 110-146 362-395 (428)
243 PRK12311 rpsB 30S ribosomal pr 34.1 35 0.00076 30.9 2.6 33 119-151 152-186 (326)
244 PF13460 NAD_binding_10: NADH( 33.8 44 0.00095 26.9 3.0 20 25-44 12-31 (183)
245 PRK03094 hypothetical protein; 33.4 41 0.00088 23.4 2.2 21 24-44 10-30 (80)
246 PF13844 Glyco_transf_41: Glyc 33.4 86 0.0019 30.1 5.2 42 284-325 282-323 (468)
247 cd00861 ProRS_anticodon_short 33.3 96 0.0021 21.7 4.5 35 8-42 2-38 (94)
248 COG1090 Predicted nucleoside-d 33.3 43 0.00094 29.5 2.9 20 25-44 12-31 (297)
249 cd03466 Nitrogenase_NifN_2 Nit 33.1 78 0.0017 30.0 5.0 34 110-146 363-396 (429)
250 cd01425 RPS2 Ribosomal protein 33.1 69 0.0015 26.6 4.1 33 118-150 126-160 (193)
251 cd00483 HPPK 7,8-dihydro-6-hyd 33.0 45 0.00097 25.6 2.7 27 289-315 1-27 (128)
252 COG0300 DltE Short-chain dehyd 33.0 44 0.00095 29.3 3.0 31 9-42 7-37 (265)
253 PF06180 CbiK: Cobalt chelatas 32.8 71 0.0015 28.0 4.3 39 287-325 2-43 (262)
254 PF08452 DNAP_B_exo_N: DNA pol 32.8 24 0.00051 17.5 0.7 17 275-291 4-20 (22)
255 PRK06603 enoyl-(acyl carrier p 32.6 96 0.0021 26.8 5.2 41 1-42 1-41 (260)
256 TIGR01501 MthylAspMutase methy 32.5 1.9E+02 0.0042 22.3 6.1 44 7-50 1-44 (134)
257 PF07894 DUF1669: Protein of u 32.4 82 0.0018 27.9 4.5 43 107-149 135-183 (284)
258 PF00448 SRP54: SRP54-type pro 32.4 1E+02 0.0022 25.6 5.0 39 9-47 3-41 (196)
259 COG1763 MobB Molybdopterin-gua 32.3 1.1E+02 0.0024 24.5 5.0 37 8-44 3-39 (161)
260 TIGR01743 purR_Bsub pur operon 32.2 1.3E+02 0.0028 26.5 5.7 32 115-146 124-157 (268)
261 PRK00771 signal recognition pa 32.1 1E+02 0.0022 29.3 5.5 40 7-46 95-134 (437)
262 PRK12939 short chain dehydroge 32.1 1.2E+02 0.0026 25.6 5.7 38 1-42 1-38 (250)
263 cd01452 VWA_26S_proteasome_sub 32.0 1.6E+02 0.0034 24.3 5.9 36 10-45 111-146 (187)
264 COG0771 MurD UDP-N-acetylmuram 31.7 84 0.0018 30.0 4.8 35 6-45 6-40 (448)
265 cd01075 NAD_bind_Leu_Phe_Val_D 31.7 80 0.0017 26.3 4.3 33 5-42 26-58 (200)
266 cd01976 Nitrogenase_MoFe_alpha 31.5 65 0.0014 30.5 4.1 34 110-146 360-393 (421)
267 COG0162 TyrS Tyrosyl-tRNA synt 31.4 56 0.0012 30.6 3.5 38 7-45 34-74 (401)
268 PRK09361 radB DNA repair and r 31.4 1.1E+02 0.0024 25.8 5.2 36 9-44 25-60 (225)
269 TIGR01281 DPOR_bchL light-inde 30.9 94 0.002 27.1 4.8 37 9-45 2-38 (268)
270 PRK09213 pur operon repressor; 30.8 1.4E+02 0.003 26.3 5.7 32 115-146 126-159 (271)
271 TIGR01007 eps_fam capsular exo 30.7 1.3E+02 0.0028 24.9 5.5 38 8-45 17-56 (204)
272 cd01141 TroA_d Periplasmic bin 30.6 89 0.0019 25.3 4.4 38 109-147 60-99 (186)
273 COG2109 BtuR ATP:corrinoid ade 30.6 3.2E+02 0.0069 22.7 10.7 38 6-43 27-64 (198)
274 TIGR01425 SRP54_euk signal rec 30.5 1.3E+02 0.0027 28.6 5.7 40 8-47 101-140 (429)
275 KOG2941 Beta-1,4-mannosyltrans 30.5 4.4E+02 0.0095 24.3 11.1 61 5-71 10-70 (444)
276 PF02558 ApbA: Ketopantoate re 30.4 50 0.0011 25.7 2.8 21 25-45 11-31 (151)
277 PRK14478 nitrogenase molybdenu 30.3 68 0.0015 30.9 4.1 31 112-145 386-416 (475)
278 PF01012 ETF: Electron transfe 30.2 72 0.0016 25.4 3.7 41 108-148 79-122 (164)
279 COG2084 MmsB 3-hydroxyisobutyr 30.1 76 0.0016 28.2 4.0 31 9-44 2-32 (286)
280 KOG2585 Uncharacterized conser 30.1 91 0.002 29.3 4.6 37 6-45 265-303 (453)
281 PRK13394 3-hydroxybutyrate deh 30.0 1.3E+02 0.0028 25.7 5.6 39 1-43 1-39 (262)
282 PRK14106 murD UDP-N-acetylmura 30.0 92 0.002 29.6 4.9 34 6-44 4-37 (450)
283 COG0378 HypB Ni2+-binding GTPa 30.0 93 0.002 25.9 4.1 37 8-45 14-50 (202)
284 cd06533 Glyco_transf_WecG_TagA 29.8 2.6E+02 0.0056 22.5 6.9 84 221-324 49-133 (171)
285 PF01380 SIS: SIS domain SIS d 29.7 1.1E+02 0.0023 22.9 4.5 37 9-46 55-91 (131)
286 PRK10916 ADP-heptose:LPS hepto 29.6 72 0.0016 29.1 4.0 39 9-47 2-42 (348)
287 PF03698 UPF0180: Uncharacteri 29.5 50 0.0011 23.0 2.2 22 24-45 10-31 (80)
288 PRK06029 3-octaprenyl-4-hydrox 29.5 83 0.0018 25.9 3.9 38 8-46 2-40 (185)
289 PRK06522 2-dehydropantoate 2-r 29.5 65 0.0014 28.6 3.6 30 9-43 2-31 (304)
290 PRK05299 rpsB 30S ribosomal pr 29.3 46 0.001 29.1 2.5 33 119-151 157-191 (258)
291 PRK07206 hypothetical protein; 29.2 2.8E+02 0.006 26.0 8.0 33 8-45 3-35 (416)
292 COG3200 AroG 3-deoxy-D-arabino 29.1 1.8E+02 0.004 26.5 6.0 87 222-325 263-351 (445)
293 TIGR01285 nifN nitrogenase mol 28.9 87 0.0019 29.8 4.5 33 110-145 364-396 (432)
294 PRK11889 flhF flagellar biosyn 28.9 1.4E+02 0.003 28.2 5.5 40 7-46 241-280 (436)
295 PRK13234 nifH nitrogenase redu 28.9 1.3E+02 0.0027 26.9 5.3 38 8-45 5-42 (295)
296 CHL00072 chlL photochlorophyll 28.8 1.1E+02 0.0024 27.2 5.0 38 9-46 2-39 (290)
297 cd01715 ETF_alpha The electron 28.8 1.6E+02 0.0035 23.5 5.5 41 109-149 73-116 (168)
298 PRK08558 adenine phosphoribosy 28.7 1.5E+02 0.0033 25.5 5.6 36 111-146 103-140 (238)
299 PRK14974 cell division protein 28.6 1.3E+02 0.0029 27.4 5.4 40 7-46 140-179 (336)
300 PRK05973 replicative DNA helic 28.6 1.1E+02 0.0025 26.3 4.7 44 8-51 65-108 (237)
301 COG0569 TrkA K+ transport syst 28.5 51 0.0011 28.1 2.6 21 24-44 12-32 (225)
302 COG0062 Uncharacterized conser 28.5 1.2E+02 0.0026 25.5 4.6 35 7-44 49-85 (203)
303 PRK06567 putative bifunctional 28.5 72 0.0016 33.7 4.0 33 6-43 382-414 (1028)
304 cd03789 GT1_LPS_heptosyltransf 28.4 70 0.0015 28.0 3.6 39 9-47 1-41 (279)
305 cd02040 NifH NifH gene encodes 28.4 1.1E+02 0.0025 26.5 5.0 38 9-46 3-40 (270)
306 TIGR02114 coaB_strep phosphopa 28.3 56 0.0012 27.9 2.9 20 23-42 27-46 (227)
307 PF01288 HPPK: 7,8-dihydro-6-h 28.3 77 0.0017 24.2 3.3 26 290-315 1-26 (127)
308 PTZ00318 NADH dehydrogenase-li 28.3 81 0.0018 29.8 4.2 37 5-46 8-44 (424)
309 COG3349 Uncharacterized conser 28.3 48 0.001 31.8 2.6 31 9-44 2-32 (485)
310 PRK11199 tyrA bifunctional cho 28.2 4.9E+02 0.011 24.1 10.5 33 7-44 98-131 (374)
311 TIGR00640 acid_CoA_mut_C methy 28.1 91 0.002 24.0 3.7 38 6-43 52-90 (132)
312 TIGR01011 rpsB_bact ribosomal 28.1 51 0.0011 28.1 2.5 34 118-151 154-189 (225)
313 PF01555 N6_N4_Mtase: DNA meth 28.1 90 0.0019 26.0 4.1 42 109-150 179-223 (231)
314 PF02780 Transketolase_C: Tran 28.0 1.1E+02 0.0025 22.9 4.3 36 6-43 8-43 (124)
315 TIGR00521 coaBC_dfp phosphopan 27.9 90 0.002 29.2 4.3 39 7-46 3-41 (390)
316 PF09001 DUF1890: Domain of un 27.9 47 0.001 25.7 2.0 26 19-44 11-36 (139)
317 COG0665 DadA Glycine/D-amino a 27.8 76 0.0017 29.2 3.9 35 6-45 3-37 (387)
318 cd03115 SRP The signal recogni 27.8 1.4E+02 0.003 23.9 5.0 37 10-46 3-39 (173)
319 PF02374 ArsA_ATPase: Anion-tr 27.8 1.3E+02 0.0028 27.1 5.2 39 9-47 2-41 (305)
320 PF10657 RC-P840_PscD: Photosy 27.8 1.1E+02 0.0023 23.1 3.7 41 6-46 45-85 (144)
321 COG2845 Uncharacterized protei 27.7 1.1E+02 0.0023 27.6 4.4 49 273-321 165-232 (354)
322 TIGR02700 flavo_MJ0208 archaeo 27.6 83 0.0018 27.0 3.8 32 15-46 6-40 (234)
323 PRK13236 nitrogenase reductase 27.6 1.4E+02 0.0031 26.5 5.5 39 7-45 6-44 (296)
324 TIGR00730 conserved hypothetic 27.5 1.2E+02 0.0025 24.9 4.4 35 9-43 2-40 (178)
325 TIGR00725 conserved hypothetic 27.5 1E+02 0.0022 24.6 4.0 33 8-40 2-36 (159)
326 PRK14494 putative molybdopteri 27.3 1.3E+02 0.0029 25.7 4.9 35 9-43 3-37 (229)
327 PRK14619 NAD(P)H-dependent gly 27.3 89 0.0019 28.0 4.1 34 6-44 3-36 (308)
328 PRK08057 cobalt-precorrin-6x r 27.3 1.2E+02 0.0026 26.4 4.7 40 109-148 55-100 (248)
329 PF13167 GTP-bdg_N: GTP-bindin 27.2 1.7E+02 0.0036 21.2 4.6 36 110-145 48-85 (95)
330 cd01018 ZntC Metal binding pro 27.2 1.8E+02 0.004 25.3 6.0 40 111-150 209-250 (266)
331 TIGR00347 bioD dethiobiotin sy 27.2 1.6E+02 0.0035 23.2 5.3 41 109-149 87-138 (166)
332 PRK00652 lpxK tetraacyldisacch 27.1 1.2E+02 0.0025 27.7 4.7 37 8-44 50-88 (325)
333 PRK12829 short chain dehydroge 27.1 98 0.0021 26.5 4.3 35 5-43 9-43 (264)
334 PF05762 VWA_CoxE: VWA domain 27.0 1.5E+02 0.0032 25.2 5.2 38 7-44 150-188 (222)
335 COG1255 Uncharacterized protei 27.0 72 0.0016 24.0 2.7 19 24-42 25-43 (129)
336 COG2085 Predicted dinucleotide 26.8 68 0.0015 27.0 2.9 22 24-45 13-34 (211)
337 TIGR03499 FlhF flagellar biosy 26.8 1.6E+02 0.0034 26.1 5.5 39 8-46 195-235 (282)
338 KOG4626 O-linked N-acetylgluco 26.7 1.3E+02 0.0027 30.0 5.0 43 284-326 756-798 (966)
339 PF03308 ArgK: ArgK protein; 26.7 1.1E+02 0.0024 26.7 4.3 40 6-45 28-67 (266)
340 cd01985 ETF The electron trans 26.6 1.4E+02 0.0031 24.2 4.9 39 109-147 81-122 (181)
341 PF12695 Abhydrolase_5: Alpha/ 26.6 1.6E+02 0.0034 22.2 5.0 33 11-43 2-34 (145)
342 cd01974 Nitrogenase_MoFe_beta 26.4 1.3E+02 0.0028 28.7 5.1 32 112-146 370-401 (435)
343 PRK08594 enoyl-(acyl carrier p 26.4 1.2E+02 0.0026 26.2 4.6 19 24-42 22-40 (257)
344 cd01829 SGNH_hydrolase_peri2 S 26.4 2.3E+02 0.005 23.0 6.3 48 275-323 50-116 (200)
345 CHL00067 rps2 ribosomal protei 26.3 57 0.0012 27.9 2.5 34 118-151 160-195 (230)
346 PRK05579 bifunctional phosphop 26.3 1.1E+02 0.0024 28.7 4.6 41 5-46 4-44 (399)
347 TIGR01286 nifK nitrogenase mol 26.2 1.1E+02 0.0024 29.8 4.7 31 113-146 431-461 (515)
348 cd03409 Chelatase_Class_II Cla 26.2 2.4E+02 0.0052 19.9 6.6 38 287-324 1-41 (101)
349 PRK04148 hypothetical protein; 26.0 70 0.0015 24.8 2.7 32 7-44 17-48 (134)
350 TIGR00228 ruvC crossover junct 26.0 1.9E+02 0.0042 23.0 5.2 46 105-150 43-103 (156)
351 PRK10964 ADP-heptose:LPS hepto 26.0 82 0.0018 28.4 3.7 37 9-45 2-40 (322)
352 PRK10751 molybdopterin-guanine 25.9 1.9E+02 0.0042 23.5 5.4 39 5-43 4-42 (173)
353 PRK08181 transposase; Validate 25.8 1.3E+02 0.0028 26.5 4.7 34 9-42 108-141 (269)
354 PF02302 PTS_IIB: PTS system, 25.7 1.4E+02 0.003 20.7 4.1 36 9-44 1-37 (90)
355 PRK06718 precorrin-2 dehydroge 25.6 1E+02 0.0022 25.7 3.9 34 6-44 9-42 (202)
356 cd00529 RuvC_resolvase Hollida 25.6 2.5E+02 0.0053 22.2 5.9 23 105-127 45-67 (154)
357 KOG1532 GTPase XAB1, interacts 25.6 1.9E+02 0.0041 25.7 5.4 40 6-45 18-57 (366)
358 cd00550 ArsA_ATPase Oxyanion-t 25.6 1.2E+02 0.0027 26.3 4.6 37 10-46 3-39 (254)
359 cd01980 Chlide_reductase_Y Chl 25.6 1.2E+02 0.0026 28.6 4.8 29 115-146 346-374 (416)
360 PRK13810 orotate phosphoribosy 25.5 2.1E+02 0.0046 23.5 5.7 37 110-146 64-102 (187)
361 KOG3062 RNA polymerase II elon 25.4 1.6E+02 0.0035 25.2 4.8 30 8-37 2-31 (281)
362 cd01714 ETF_beta The electron 25.3 1.4E+02 0.0031 24.9 4.7 37 109-145 98-140 (202)
363 PRK06242 flavodoxin; Provision 25.1 1.6E+02 0.0035 22.8 4.8 49 272-320 58-107 (150)
364 TIGR00853 pts-lac PTS system, 25.1 2.2E+02 0.0048 20.4 5.0 38 6-43 2-39 (95)
365 PRK12825 fabG 3-ketoacyl-(acyl 25.0 1.6E+02 0.0034 24.8 5.2 35 6-44 5-39 (249)
366 PF02572 CobA_CobO_BtuR: ATP:c 24.9 3.8E+02 0.0083 21.8 9.6 38 7-44 3-40 (172)
367 COG3046 Uncharacterized protei 24.8 89 0.0019 29.2 3.5 26 20-45 51-76 (505)
368 PF07302 AroM: AroM protein; 24.7 1.3E+02 0.0029 25.5 4.3 33 116-148 175-210 (221)
369 PF01738 DLH: Dienelactone hyd 24.7 1.5E+02 0.0033 24.6 4.9 35 8-42 14-48 (218)
370 PRK07066 3-hydroxybutyryl-CoA 24.6 1.1E+02 0.0023 27.9 4.0 40 1-45 1-40 (321)
371 PRK01175 phosphoribosylformylg 24.6 1.6E+02 0.0035 25.8 5.0 36 6-44 2-37 (261)
372 PRK06526 transposase; Provisio 24.5 87 0.0019 27.3 3.4 37 7-43 98-134 (254)
373 PRK12744 short chain dehydroge 24.5 1.6E+02 0.0035 25.2 5.1 31 9-42 9-39 (257)
374 TIGR00708 cobA cob(I)alamin ad 24.5 2.1E+02 0.0046 23.3 5.3 37 6-42 4-40 (173)
375 PRK08229 2-dehydropantoate 2-r 24.3 89 0.0019 28.4 3.6 32 8-44 3-34 (341)
376 PRK15411 rcsA colanic acid cap 24.2 1.8E+02 0.004 24.2 5.2 36 114-149 42-86 (207)
377 PTZ00254 40S ribosomal protein 24.0 1.1E+02 0.0025 26.5 3.8 33 119-151 118-152 (249)
378 cd02033 BchX Chlorophyllide re 23.9 1.9E+02 0.0042 26.3 5.6 39 8-46 32-70 (329)
379 TIGR00745 apbA_panE 2-dehydrop 23.9 61 0.0013 28.5 2.4 19 26-44 5-23 (293)
380 PRK09739 hypothetical protein; 23.8 2.1E+02 0.0047 23.6 5.5 37 7-43 3-42 (199)
381 PRK12377 putative replication 23.8 1.5E+02 0.0032 25.8 4.6 35 9-43 103-137 (248)
382 PRK13869 plasmid-partitioning 23.8 1.4E+02 0.003 28.1 4.8 39 8-46 121-161 (405)
383 PRK14489 putative bifunctional 23.7 1.8E+02 0.004 26.8 5.5 38 7-44 205-242 (366)
384 cd03416 CbiX_SirB_N Sirohydroc 23.7 1.6E+02 0.0034 21.1 4.2 27 287-313 1-27 (101)
385 PRK06935 2-deoxy-D-gluconate 3 23.7 1.5E+02 0.0032 25.4 4.8 34 8-44 15-48 (258)
386 PRK12921 2-dehydropantoate 2-r 23.7 94 0.002 27.6 3.6 30 9-43 2-31 (305)
387 TIGR01675 plant-AP plant acid 23.6 94 0.002 26.6 3.3 24 22-45 123-146 (229)
388 COG2099 CobK Precorrin-6x redu 23.6 1.3E+02 0.0028 26.1 4.1 38 109-146 56-99 (257)
389 KOG2825 Putative arsenite-tran 23.6 3.7E+02 0.0079 23.6 6.6 41 7-47 18-59 (323)
390 TIGR01358 DAHP_synth_II 3-deox 23.5 3.3E+02 0.0071 25.8 6.9 84 222-325 259-347 (443)
391 PRK14491 putative bifunctional 23.4 1.8E+02 0.0038 29.1 5.6 37 7-43 10-46 (597)
392 cd01147 HemV-2 Metal binding p 23.4 1.4E+02 0.0031 25.6 4.6 39 110-149 66-107 (262)
393 PRK10867 signal recognition pa 23.3 2E+02 0.0044 27.3 5.8 41 7-47 100-141 (433)
394 PF01266 DAO: FAD dependent ox 23.2 75 0.0016 28.6 2.9 21 24-44 11-31 (358)
395 PRK13886 conjugal transfer pro 23.2 2.5E+02 0.0054 24.3 5.8 40 7-46 3-42 (241)
396 COG4081 Uncharacterized protei 23.1 1.8E+02 0.004 22.3 4.3 26 19-44 16-41 (148)
397 PRK07952 DNA replication prote 23.1 1.6E+02 0.0036 25.4 4.8 35 9-43 101-135 (244)
398 PF02702 KdpD: Osmosensitive K 23.1 1.8E+02 0.0039 24.4 4.6 41 6-46 4-44 (211)
399 PRK06079 enoyl-(acyl carrier p 22.9 1.5E+02 0.0033 25.3 4.7 33 8-42 7-40 (252)
400 PRK12726 flagellar biosynthesi 22.7 2.3E+02 0.0049 26.6 5.7 40 7-46 206-245 (407)
401 PLN02211 methyl indole-3-aceta 22.7 1.8E+02 0.0039 25.4 5.1 37 6-43 17-53 (273)
402 TIGR01283 nifE nitrogenase mol 22.7 1.3E+02 0.0029 28.8 4.5 33 111-146 387-419 (456)
403 PRK11064 wecC UDP-N-acetyl-D-m 22.6 1.3E+02 0.0027 28.5 4.3 33 7-44 3-35 (415)
404 TIGR01689 EcbF-BcbF capsule bi 22.6 1.2E+02 0.0025 23.3 3.3 24 23-46 28-51 (126)
405 COG2099 CobK Precorrin-6x redu 22.6 1.5E+02 0.0033 25.8 4.3 35 112-146 189-228 (257)
406 PF03808 Glyco_tran_WecB: Glyc 22.5 4.1E+02 0.009 21.3 7.0 85 220-324 50-135 (172)
407 PRK14569 D-alanyl-alanine synt 22.5 2E+02 0.0044 25.6 5.4 37 7-43 3-43 (296)
408 PF00185 OTCace: Aspartate/orn 22.4 2E+02 0.0044 22.8 4.9 36 7-45 2-37 (158)
409 TIGR00234 tyrS tyrosyl-tRNA sy 22.4 87 0.0019 29.2 3.1 35 10-45 35-72 (377)
410 COG0451 WcaG Nucleoside-diphos 22.4 1.1E+02 0.0024 26.9 3.8 25 18-44 9-33 (314)
411 PF03796 DnaB_C: DnaB-like hel 22.4 1.8E+02 0.0039 25.2 5.0 40 10-49 22-62 (259)
412 KOG0332 ATP-dependent RNA heli 22.4 74 0.0016 29.3 2.5 22 24-45 343-364 (477)
413 PRK06921 hypothetical protein; 22.3 1.8E+02 0.0039 25.5 5.0 37 7-43 117-154 (266)
414 PLN03050 pyridoxine (pyridoxam 22.3 86 0.0019 27.2 2.9 33 8-43 61-95 (246)
415 PRK09435 membrane ATPase/prote 22.3 2.2E+02 0.0047 26.0 5.5 40 7-46 56-95 (332)
416 PRK12828 short chain dehydroge 22.2 2.1E+02 0.0045 23.9 5.4 37 3-43 3-39 (239)
417 PLN00141 Tic62-NAD(P)-related 22.2 2E+02 0.0043 24.6 5.2 32 7-42 17-48 (251)
418 PF13614 AAA_31: AAA domain; P 22.2 2E+02 0.0043 22.3 4.9 36 12-47 6-41 (157)
419 COG0745 OmpR Response regulato 22.1 1.9E+02 0.0041 24.7 4.9 38 112-150 37-82 (229)
420 PRK08293 3-hydroxybutyryl-CoA 22.0 1.1E+02 0.0025 27.0 3.7 33 7-44 3-35 (287)
421 PF01497 Peripla_BP_2: Peripla 22.0 1.3E+02 0.0028 25.3 4.0 40 110-150 52-93 (238)
422 COG0763 LpxB Lipid A disacchar 21.9 3.8E+02 0.0083 24.9 7.0 36 116-151 82-122 (381)
423 PLN02240 UDP-glucose 4-epimera 21.9 1.6E+02 0.0034 26.7 4.7 32 7-42 5-36 (352)
424 PF02844 GARS_N: Phosphoribosy 21.8 1.7E+02 0.0036 21.4 3.8 36 110-145 53-91 (100)
425 PRK12560 adenine phosphoribosy 21.7 2.7E+02 0.0059 22.9 5.6 36 111-147 44-81 (187)
426 PF03403 PAF-AH_p_II: Platelet 21.7 82 0.0018 29.3 2.8 39 6-44 98-136 (379)
427 PF13604 AAA_30: AAA domain; P 21.6 2.4E+02 0.0051 23.3 5.4 36 9-44 20-55 (196)
428 TIGR01917 gly_red_sel_B glycin 21.4 7.1E+02 0.015 23.6 8.6 48 107-154 324-378 (431)
429 PTZ00445 p36-lilke protein; Pr 21.3 1E+02 0.0022 26.0 3.0 28 19-46 74-102 (219)
430 PF05724 TPMT: Thiopurine S-me 21.3 1E+02 0.0022 26.2 3.0 27 10-42 40-66 (218)
431 TIGR02195 heptsyl_trn_II lipop 21.3 1E+02 0.0022 27.9 3.4 38 9-46 1-40 (334)
432 TIGR00288 conserved hypothetic 21.1 1.4E+02 0.0031 23.9 3.6 26 17-45 114-139 (160)
433 cd01836 FeeA_FeeB_like SGNH_hy 21.0 3.2E+02 0.0069 22.0 6.0 48 275-322 55-113 (191)
434 COG0369 CysJ Sulfite reductase 20.9 1.6E+02 0.0034 29.3 4.6 36 9-44 50-85 (587)
435 TIGR03026 NDP-sugDHase nucleot 20.8 1.4E+02 0.003 28.1 4.2 31 9-44 2-32 (411)
436 PF02571 CbiJ: Precorrin-6x re 20.8 1.4E+02 0.0031 25.9 3.9 38 110-147 57-100 (249)
437 PRK13982 bifunctional SbtC-lik 20.8 1.6E+02 0.0036 28.3 4.6 40 7-47 70-109 (475)
438 PRK12823 benD 1,6-dihydroxycyc 20.8 1.9E+02 0.0042 24.7 4.9 32 9-43 9-40 (260)
439 PRK08309 short chain dehydroge 20.7 1.4E+02 0.003 24.3 3.7 19 25-43 13-31 (177)
440 PF07015 VirC1: VirC1 protein; 20.7 1.8E+02 0.0039 24.9 4.4 33 15-47 10-42 (231)
441 PRK11780 isoprenoid biosynthes 20.5 2.3E+02 0.0051 24.0 5.1 36 9-45 3-43 (217)
442 TIGR03018 pepcterm_TyrKin exop 20.5 2.3E+02 0.005 23.5 5.1 39 7-45 34-75 (207)
443 PRK14618 NAD(P)H-dependent gly 20.4 1.5E+02 0.0032 26.8 4.2 33 7-44 4-36 (328)
444 cd03109 DTBS Dethiobiotin synt 20.4 2.1E+02 0.0045 21.9 4.4 34 11-44 3-36 (134)
445 PRK10416 signal recognition pa 20.3 2.4E+02 0.0052 25.5 5.4 40 7-46 114-153 (318)
446 PF00920 ILVD_EDD: Dehydratase 20.2 1.6E+02 0.0035 28.6 4.4 46 106-151 66-115 (521)
447 COG1440 CelA Phosphotransferas 20.2 2.7E+02 0.0058 20.4 4.5 35 8-42 2-36 (102)
448 PRK05647 purN phosphoribosylgl 20.2 5.1E+02 0.011 21.5 8.9 34 8-44 2-37 (200)
449 PLN02918 pyridoxine (pyridoxam 20.2 2E+02 0.0044 28.2 5.1 36 8-44 136-171 (544)
450 PF00391 PEP-utilizers: PEP-ut 20.2 1.6E+02 0.0035 20.2 3.4 29 118-146 29-59 (80)
451 cd01968 Nitrogenase_NifE_I Nit 20.1 1.4E+02 0.003 28.1 4.0 32 111-145 348-379 (410)
452 KOG0991 Replication factor C, 20.1 91 0.002 26.9 2.4 32 5-36 46-77 (333)
453 PRK13230 nitrogenase reductase 20.0 2.1E+02 0.0046 25.1 5.0 37 8-44 2-38 (279)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=4.9e-55 Score=408.41 Aligned_cols=355 Identities=48% Similarity=0.873 Sum_probs=253.2
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCc
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCEN 84 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (367)
.++.||+++|+|++||++||++||+.|+.||+.|||++++.+...+.+........+..++|+.+++|...+++|++.+.
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~ 85 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCEN 85 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccc
Confidence 34579999999999999999999999999999999999987765444432211001124899999877654578766543
Q ss_pred ccccchhhhHHHHHHHHHHHHhhHHHHHHHhhh--CCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhhhhh
Q 041444 85 LDAITNEVNKELIVKFLGATTKLQEPLEQLLRD--HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLRL 162 (367)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 162 (367)
....+.. ..+..+......+.+.+++++++ .+++|||+|.|+.|+.++|+++|||.+.||+++++....++++..
T Consensus 86 ~~~~~~~---~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~ 162 (491)
T PLN02534 86 LDTLPSR---DLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRL 162 (491)
T ss_pred cccCCcH---HHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHH
Confidence 3322221 34445555556677888888875 468999999999999999999999999999999988766544332
Q ss_pred hcCCCCCCCCCCceecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHhhhccceEEecccccccHHHHHHHHHhc
Q 041444 163 YEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESESRSYGVAVNSFYELEPAYADHYRKAL 242 (367)
Q Consensus 163 ~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~~~~~~ 242 (367)
.........+..+..+||+|....++..++|.+ +.....+..+...+.+....++++++|||+|||+.+++++++.+
T Consensus 163 ~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~ 239 (491)
T PLN02534 163 HNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGA---FVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAI 239 (491)
T ss_pred hcccccCCCCCceeecCCCCccccccHHHCChh---hcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhc
Confidence 222111112223456888875444677788875 32112233333333333345789999999999999999998766
Q ss_pred CCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEE
Q 041444 243 GRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLEASGRNFIWVV 322 (367)
Q Consensus 243 ~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~~~~~lW~~ 322 (367)
++++++|||++.......+...++......+++|.+|||+++++|||||||||+..+.++|+.+++.||+.++++|||++
T Consensus 240 ~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~ 319 (491)
T PLN02534 240 KKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVI 319 (491)
T ss_pred CCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 67899999997532110000000000011245799999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 323 RKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 323 ~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
+.+.... +.....+|++|+++++++|+++.+|+||.+||+|++
T Consensus 320 r~~~~~~--~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~ 362 (491)
T PLN02534 320 KTGEKHS--ELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPA 362 (491)
T ss_pred ecCcccc--chhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCc
Confidence 9532110 001113689999999999999889999999999985
No 2
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=8.9e-54 Score=398.11 Aligned_cols=346 Identities=29% Similarity=0.455 Sum_probs=243.3
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCc
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCEN 84 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (367)
..+.||+++|+|++||++||++||+.|+.||+.|||++++.+...+.+... . ....++++.+++|.. +++|++.+.
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~-~--~~~~i~~~~lp~p~~-dglp~~~~~ 79 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS-Q--LSSSITLVSFPLPSV-PGLPSSAES 79 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc-c--CCCCeeEEECCCCcc-CCCCCCccc
Confidence 457899999999999999999999999999999999999976544432100 0 012488999887653 467755433
Q ss_pred ccccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhhhhhhc
Q 041444 85 LDAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLRLYE 164 (367)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 164 (367)
...... .....+..+.+.+.+.+++++++.+++|||+|.|+.|+..+|+++|||++.|+++++.....+++.....
T Consensus 80 ~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~ 155 (472)
T PLN02670 80 STDVPY----TKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLM 155 (472)
T ss_pred ccccch----hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhh
Confidence 222210 1112333445567888888888778999999999999999999999999999999998877655432221
Q ss_pred CCCCCCCCCCce-ecCCC-CC--cccccccCCCcccccCCC---C-hhHHHHHHHHHHhhhccceEEecccccccHHHHH
Q 041444 165 PHKKVSSDSEPF-VMPHF-PG--EIKLTRNQLPDFVKQDMG---D-NDLSRLLKATNESESRSYGVAVNSFYELEPAYAD 236 (367)
Q Consensus 165 ~~~~~~~~~~~~-~~p~~-p~--~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~ 236 (367)
..+......... .+|+. |. .+.++..++|.+ ... . ..+..+. +....+.+++++++|||+|||+.+++
T Consensus 156 ~~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~---~~~~~~~~~~~~~~~-~~~~~~~~~~gvlvNTf~eLE~~~l~ 231 (472)
T PLN02670 156 EGGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKY---VEKTEEDETGPSDSV-RFGFAIGGSDVVIIRSSPEFEPEWFD 231 (472)
T ss_pred hcccCCCccccccCCCCcCCCCccccccHHHhhHH---HhccCccchHHHHHH-HHHhhcccCCEEEEeCHHHHhHHHHH
Confidence 111111111111 24443 21 112455677765 321 1 1122222 33344567899999999999999999
Q ss_pred HHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCC
Q 041444 237 HYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLEASGR 316 (367)
Q Consensus 237 ~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~~~ 316 (367)
++++..++++++|||++....... . ..........+|.+|||+++++|||||||||+..++.+|+++++.||+++++
T Consensus 232 ~l~~~~~~~v~~VGPl~~~~~~~~-~--~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~ 308 (472)
T PLN02670 232 LLSDLYRKPIIPIGFLPPVIEDDE-E--DDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSET 308 (472)
T ss_pred HHHHhhCCCeEEEecCCccccccc-c--ccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCC
Confidence 998755578999999975311100 0 0000001236799999999889999999999999999999999999999999
Q ss_pred cEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 317 NFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 317 ~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
+|||++++..... .+..+.+|+||++|+++||+++.+|+||.+||+||+
T Consensus 309 ~FlWv~r~~~~~~--~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~ 357 (472)
T PLN02670 309 PFFWVLRNEPGTT--QNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHES 357 (472)
T ss_pred CEEEEEcCCcccc--cchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcc
Confidence 9999998632110 111125999999999999999889999999999986
No 3
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.7e-53 Score=395.86 Aligned_cols=345 Identities=33% Similarity=0.615 Sum_probs=250.2
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCc
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCEN 84 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (367)
..++||+++|+|++||++||++||+.|+.+|+.|||++++.+...+.+... ....++++.+++|.. +++|++.+.
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~-~~lPdG~~~ 81 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSH-PSIPSGVEN 81 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCc-CCCCCCCcC
Confidence 357899999999999999999999999999999999999977654443211 112578888877653 467777654
Q ss_pred ccccchhhhHHHHHHHHHHHHhhHHHHHHHhhh--CCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhhhhh
Q 041444 85 LDAITNEVNKELIVKFLGATTKLQEPLEQLLRD--HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLRL 162 (367)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 162 (367)
....+. +.+..+..+...+.+.+++++++ .+++|||+|.|+.|+.++|+++|||++.||+++++.+..+++++.
T Consensus 82 ~~~~~~----~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~ 157 (477)
T PLN02863 82 VKDLPP----SGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWR 157 (477)
T ss_pred hhhcch----hhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhh
Confidence 333221 33334555555666777777765 467999999999999999999999999999999999988877654
Q ss_pred hcCCCCCC-CCCCc---eecCCCCCcccccccCCCcccccCCC---ChhHHHHHHHHHHhhhccceEEecccccccHHHH
Q 041444 163 YEPHKKVS-SDSEP---FVMPHFPGEIKLTRNQLPDFVKQDMG---DNDLSRLLKATNESESRSYGVAVNSFYELEPAYA 235 (367)
Q Consensus 163 ~~~~~~~~-~~~~~---~~~p~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~ 235 (367)
..+..... ..... ..+||++. ++..++|.+ ++. .+.....+.+.......++++++|||++||+.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 231 (477)
T PLN02863 158 EMPTKINPDDQNEILSFSKIPNCPK---YPWWQISSL---YRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYL 231 (477)
T ss_pred cccccccccccccccccCCCCCCCC---cChHhCchh---hhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHH
Confidence 32211100 11111 24677765 788888876 332 1122223333333455678899999999999999
Q ss_pred HHHHHhcC-CceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhC
Q 041444 236 DHYRKALG-RRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLEAS 314 (367)
Q Consensus 236 ~~~~~~~~-~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~ 314 (367)
+++++.++ +++++|||+++..........++...+..+++|.+|||++++++||||||||+..++.+++++++.||+++
T Consensus 232 ~~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~ 311 (477)
T PLN02863 232 EHLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKS 311 (477)
T ss_pred HHHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhC
Confidence 99987654 68999999975321100000001111113567999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 315 GRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 315 ~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
+++|||+++...... ... ..+|+||++|++++|+++.+|+||.+||+|++
T Consensus 312 ~~~flw~~~~~~~~~--~~~-~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~ 361 (477)
T PLN02863 312 GVHFIWCVKEPVNEE--SDY-SNIPSGFEDRVAGRGLVIRGWAPQVAILSHRA 361 (477)
T ss_pred CCcEEEEECCCcccc--cch-hhCCHHHHHHhccCCEEecCCCCHHHHhcCCC
Confidence 999999998542110 011 24899999999999999889999999999985
No 4
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=3.9e-53 Score=392.82 Aligned_cols=326 Identities=24% Similarity=0.405 Sum_probs=240.0
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcc
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENL 85 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (367)
+++||+++|+|++||++|+++||+.|++|||+|||+|+..+...+.+. ......+++..++.+. .++++++.+..
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~----~a~~~~i~~~~l~~p~-~dgLp~g~~~~ 77 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHH----NLFPDSIVFHPLTIPP-VNGLPAGAETT 77 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcc----cCCCCceEEEEeCCCC-ccCCCCCcccc
Confidence 468999999999999999999999999999999999988654433321 0011246677666542 14566654322
Q ss_pred cccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhhhhhhcC
Q 041444 86 DAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLRLYEP 165 (367)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 165 (367)
..... +....+....+.+.+.+++++++.++||||+| ++.|+.++|+++|||++.||+++++.+. +++.+.
T Consensus 78 ~~l~~----~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~--- 148 (442)
T PLN02208 78 SDIPI----SMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG--- 148 (442)
T ss_pred cchhH----HHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc---
Confidence 21111 22233445566778888888888889999999 6789999999999999999999998654 444321
Q ss_pred CCCCCCCCCceecCCCCCc-ccccccCCCcccccCCCChhHHHHHHHHHHhhhccceEEecccccccHHHHHHHHHhcCC
Q 041444 166 HKKVSSDSEPFVMPHFPGE-IKLTRNQLPDFVKQDMGDNDLSRLLKATNESESRSYGVAVNSFYELEPAYADHYRKALGR 244 (367)
Q Consensus 166 ~~~~~~~~~~~~~p~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~~~~~~~~ 244 (367)
... ...+||+|.. +.++..++|.+ ......+..+...+.+...+++++++|||+|||+.+++++++.+++
T Consensus 149 -~~~-----~~~~pglp~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~ 219 (442)
T PLN02208 149 -GKL-----GVPPPGYPSSKVLFRENDAHAL---ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHK 219 (442)
T ss_pred -ccc-----CCCCCCCCCcccccCHHHcCcc---cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCC
Confidence 010 1125777742 23566677753 2211123333333334556789999999999999999999877778
Q ss_pred ceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEec
Q 041444 245 RAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLEASGRNFIWVVRK 324 (367)
Q Consensus 245 ~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~~~~~lW~~~~ 324 (367)
++++|||+++..... ..++.+|.+|||+++++|||||||||+..++.+|+.+++.+|+.++++|+|+++.
T Consensus 220 ~v~~vGpl~~~~~~~----------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~ 289 (442)
T PLN02208 220 KVLLTGPMFPEPDTS----------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKP 289 (442)
T ss_pred CEEEEeecccCcCCC----------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeC
Confidence 999999998643210 1257889999999988999999999999999999999999999999999999985
Q ss_pred CCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 325 NKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 325 ~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
+... ....+.+|+||++|++++|+++.+|+||.+||+||+
T Consensus 290 ~~~~---~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~ 329 (442)
T PLN02208 290 PRGS---STVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPS 329 (442)
T ss_pred CCcc---cchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCc
Confidence 4211 011125899999999999999989999999999996
No 5
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-52 Score=390.34 Aligned_cols=325 Identities=26% Similarity=0.450 Sum_probs=235.9
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcc
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENL 85 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (367)
.++||+++|+|++||++||++||+.|++||++||++|+..+...+.+... ....++|..+++|.. +++|++.+..
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~~~~i~~~~i~lP~~-dGLP~g~e~~ 77 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----FPDSIVFEPLTLPPV-DGLPFGAETA 77 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----CCCceEEEEecCCCc-CCCCCccccc
Confidence 46899999999999999999999999999999999999865543332210 012477876665542 4677654332
Q ss_pred cccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhhhhhhcC
Q 041444 86 DAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLRLYEP 165 (367)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 165 (367)
.+... .....+......+.+.+++++++.++||||+|. +.|+.++|+++|||++.||+++++....+++.. .
T Consensus 78 ~~l~~----~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~-~-- 149 (446)
T PLN00414 78 SDLPN----STKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPR-A-- 149 (446)
T ss_pred ccchh----hHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcH-h--
Confidence 22211 223334555666778888888777899999995 889999999999999999999998877655421 0
Q ss_pred CCCCCCCCCceecCCCCCc-ccccccC--CCcccccCCCChhHHHHHHHHHHhhhccceEEecccccccHHHHHHHHHhc
Q 041444 166 HKKVSSDSEPFVMPHFPGE-IKLTRNQ--LPDFVKQDMGDNDLSRLLKATNESESRSYGVAVNSFYELEPAYADHYRKAL 242 (367)
Q Consensus 166 ~~~~~~~~~~~~~p~~p~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~~~~~~ 242 (367)
.. + ..+||+|.. +.++..+ ++.+ +... ...+.+..+...+++++++|||+|||+.++++++...
T Consensus 150 --~~---~--~~~pg~p~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~ 216 (446)
T PLN00414 150 --EL---G--FPPPDYPLSKVALRGHDANVCSL---FANS---HELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQC 216 (446)
T ss_pred --hc---C--CCCCCCCCCcCcCchhhcccchh---hccc---HHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhc
Confidence 00 0 124666531 1122222 2232 2111 1233334455677899999999999999999987755
Q ss_pred CCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEE
Q 041444 243 GRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLEASGRNFIWVV 322 (367)
Q Consensus 243 ~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~~~~~lW~~ 322 (367)
++++++|||++...... . . ...+.+|.+|||+|+++|||||||||+..++.+|+.|++.||+.++++|+|++
T Consensus 217 ~~~v~~VGPl~~~~~~~--~---~---~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvv 288 (446)
T PLN00414 217 QRKVLLTGPMLPEPQNK--S---G---KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAV 288 (446)
T ss_pred CCCeEEEcccCCCcccc--c---C---cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 56899999997532110 0 0 11346799999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 323 RKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 323 ~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
+..... ++..+.+|+||++|+++||+|+.+|+||.+||+|++
T Consensus 289 r~~~~~---~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~ 330 (446)
T PLN00414 289 MPPKGS---STVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPS 330 (446)
T ss_pred ecCCCc---ccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCc
Confidence 864211 111225999999999999999989999999999985
No 6
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-52 Score=387.26 Aligned_cols=329 Identities=24% Similarity=0.421 Sum_probs=238.9
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcc
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENL 85 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (367)
.+.||+++|+|++||++||++||+.|+.||+.||++|++.+...+.+. . . ....+++..+++|. .+++|++.+..
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~-~-~--~~~~~~v~~~~~p~-~~glp~g~e~~ 78 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL-N-L--FPHNIVFRSVTVPH-VDGLPVGTETV 78 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc-c-c--CCCCceEEEEECCC-cCCCCCccccc
Confidence 468999999999999999999999999999999999998765433321 0 0 01123444444443 24677664433
Q ss_pred cccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhhhhhhcC
Q 041444 86 DAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLRLYEP 165 (367)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 165 (367)
..... .....+..+...+.+.+++++++.++||||+| |+.|+.++|+++|||++.||+++++.+..+.+ +
T Consensus 79 ~~~~~----~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D-~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~---- 148 (453)
T PLN02764 79 SEIPV----TSADLLMSAMDLTRDQVEVVVRAVEPDLIFFD-FAHWIPEVARDFGLKTVKYVVVSASTIASMLV-P---- 148 (453)
T ss_pred ccCCh----hHHHHHHHHHHHhHHHHHHHHHhCCCCEEEEC-CchhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----
Confidence 22221 23344555566678888888887788999999 48899999999999999999999988776542 1
Q ss_pred CCCCCCCCCceecCCCCCc-ccccccCCCcccccCCCC--hhHHHHHHHHHHhhhccceEEecccccccHHHHHHHHHhc
Q 041444 166 HKKVSSDSEPFVMPHFPGE-IKLTRNQLPDFVKQDMGD--NDLSRLLKATNESESRSYGVAVNSFYELEPAYADHYRKAL 242 (367)
Q Consensus 166 ~~~~~~~~~~~~~p~~p~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~~~~~~ 242 (367)
.+.. ...+||+|.. +.++..+++.+....... ..+..++.++.+...+++++++|||+|||+.+++++++..
T Consensus 149 ~~~~-----~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~ 223 (453)
T PLN02764 149 GGEL-----GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHC 223 (453)
T ss_pred cccC-----CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhc
Confidence 1111 1124777631 124556666531100101 1233344444455677889999999999999999997644
Q ss_pred CCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEE
Q 041444 243 GRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLEASGRNFIWVV 322 (367)
Q Consensus 243 ~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~~~~~lW~~ 322 (367)
++++++|||+++..... ...+.+|.+|||+|+++|||||||||+..++.+|+.+++.||+.++++|+|++
T Consensus 224 ~~~v~~VGPL~~~~~~~----------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~ 293 (453)
T PLN02764 224 RKKVLLTGPVFPEPDKT----------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAV 293 (453)
T ss_pred CCcEEEeccCccCcccc----------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 56899999997532110 01356899999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 323 RKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 323 ~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
+..... ++..+.+|+||++|+++||+++.+|+||.+||+|++
T Consensus 294 r~~~~~---~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~ 335 (453)
T PLN02764 294 KPPRGS---STIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPS 335 (453)
T ss_pred eCCCCC---cchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcc
Confidence 964211 111235999999999999999989999999999985
No 7
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.4e-52 Score=389.99 Aligned_cols=329 Identities=26% Similarity=0.452 Sum_probs=232.9
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPD 80 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
|-..+.+.||+++|+|++||++||++||+.|+.||+.|||+++..+... .. . ...++++..+| +++|+
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-~----~~~~i~~~~ip-----~glp~ 68 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-D----DFTDFQFVTIP-----ESLPE 68 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-c----CCCCeEEEeCC-----CCCCc
Confidence 6555678899999999999999999999999999999999999866421 11 0 01247777775 35665
Q ss_pred C-CCcccccchhhhHHHHHHHHHHHHhhHHHHHHHhhh------CCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhH
Q 041444 81 G-CENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRD------HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFS 153 (367)
Q Consensus 81 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~------~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 153 (367)
+ .+.. ... .++..+. ..+.+.+++++++ .+++|||+|.|+.|+.++|+++|||.+.||+++++.
T Consensus 69 ~~~~~~---~~~---~~~~~~~---~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~ 139 (451)
T PLN02410 69 SDFKNL---GPI---EFLHKLN---KECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATA 139 (451)
T ss_pred cccccc---CHH---HHHHHHH---HHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHH
Confidence 3 1211 110 2222222 2233344444332 357999999999999999999999999999999988
Q ss_pred HHHHhhhhhhcCCC---CCCC--CCCceecCCCCCcccccccCCCcccccCC-CChhHHHHHHHHHHhhhccceEEeccc
Q 041444 154 LCASNCLRLYEPHK---KVSS--DSEPFVMPHFPGEIKLTRNQLPDFVKQDM-GDNDLSRLLKATNESESRSYGVAVNSF 227 (367)
Q Consensus 154 ~~~~~~~~~~~~~~---~~~~--~~~~~~~p~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~nt~ 227 (367)
+..+++++.+...+ .... ++....+||++. ++..++|.+ .. ....+...+.... .+.+++++++|||
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~---~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf 212 (451)
T PLN02410 140 FVCRSVFDKLYANNVLAPLKEPKGQQNELVPEFHP---LRCKDFPVS---HWASLESIMELYRNTV-DKRTASSVIINTA 212 (451)
T ss_pred HHHHHHHHHHHhccCCCCccccccCccccCCCCCC---CChHHCcch---hcCCcHHHHHHHHHHh-hcccCCEEEEeCh
Confidence 87666543321100 0000 112335888875 677778764 22 1112222222222 3467899999999
Q ss_pred ccccHHHHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHH
Q 041444 228 YELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEI 307 (367)
Q Consensus 228 ~~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~ 307 (367)
+|||+.+++++++..++++++|||++...... ...+....+|.+|||+++++|||||||||+..++.+|++++
T Consensus 213 ~eLE~~~~~~l~~~~~~~v~~vGpl~~~~~~~-------~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~el 285 (451)
T PLN02410 213 SCLESSSLSRLQQQLQIPVYPIGPLHLVASAP-------TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMET 285 (451)
T ss_pred HHhhHHHHHHHHhccCCCEEEecccccccCCC-------ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHH
Confidence 99999999999876667899999998642111 00111345799999999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 308 ATGLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 308 ~~al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
+.||+.++++|||+++.+... + .+....+|++|+||+++||+|+ +|+||.+||+||+
T Consensus 286 a~gLe~s~~~FlWv~r~~~~~-~-~~~~~~lp~~f~er~~~~g~v~-~w~PQ~~iL~h~~ 342 (451)
T PLN02410 286 ASGLDSSNQQFLWVIRPGSVR-G-SEWIESLPKEFSKIISGRGYIV-KWAPQKEVLSHPA 342 (451)
T ss_pred HHHHHhcCCCeEEEEccCccc-c-cchhhcCChhHHHhccCCeEEE-ccCCHHHHhCCCc
Confidence 999999999999999853210 0 1111248999999999999999 8999999999986
No 8
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.3e-52 Score=390.72 Aligned_cols=330 Identities=25% Similarity=0.429 Sum_probs=237.1
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCc
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFA-TRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCEN 84 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~-~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (367)
.++||+++|+|++||++||++||+.|+ ++|++|||+++..+...+.+... ...+++++.+|.+.. +++++...
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~-~glp~~~~- 77 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDI-SGLVDPSA- 77 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCccc-cCCCCCCc-
Confidence 468999999999999999999999998 79999999999976543322110 012588888876543 24432111
Q ss_pred ccccchhhhHHHHHHHHHHHHhhHHHHHHHhhh--CCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhhhhh
Q 041444 85 LDAITNEVNKELIVKFLGATTKLQEPLEQLLRD--HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLRL 162 (367)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 162 (367)
.....+......+.+.+++++++ .+++|||+|.|+.|+.++|+++|||++.|++++++.+..+.+++.
T Consensus 78 ----------~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~ 147 (481)
T PLN02992 78 ----------HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPT 147 (481)
T ss_pred ----------cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhh
Confidence 11112223333456677777765 478999999999999999999999999999999988776665543
Q ss_pred hc-CCCC-CCCCCCceecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHhhhccceEEecccccccHHHHHHHHH
Q 041444 163 YE-PHKK-VSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESESRSYGVAVNSFYELEPAYADHYRK 240 (367)
Q Consensus 163 ~~-~~~~-~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~~~~ 240 (367)
.. .... ....+.+..+||++. ++..++|... ....+.....+.+....+.+++++++|||+|||+.++++++.
T Consensus 148 ~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~--~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~ 222 (481)
T PLN02992 148 LDKDIKEEHTVQRKPLAMPGCEP---VRFEDTLDAY--LVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQD 222 (481)
T ss_pred hccccccccccCCCCcccCCCCc---cCHHHhhHhh--cCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhh
Confidence 21 1110 000112345888875 6777888531 122212122333444556788999999999999999998864
Q ss_pred h------cCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhC
Q 041444 241 A------LGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLEAS 314 (367)
Q Consensus 241 ~------~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~ 314 (367)
. ..+++++|||++..... ...+.+|.+|||+++++|||||||||+..++.+|+++++.||+.+
T Consensus 223 ~~~~~~~~~~~v~~VGPl~~~~~~-----------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s 291 (481)
T PLN02992 223 PKLLGRVARVPVYPIGPLCRPIQS-----------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMS 291 (481)
T ss_pred ccccccccCCceEEecCccCCcCC-----------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHc
Confidence 2 13579999999753211 013567999999998999999999999999999999999999999
Q ss_pred CCcEEEEEecCCCCC---------C---CCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 315 GRNFIWVVRKNKNDG---------G---EGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 315 ~~~~lW~~~~~~~~~---------~---~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
+++|||+++...... + .++..+.+|+||+||+++||+++.+|+||.+||+|++
T Consensus 292 ~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~ 356 (481)
T PLN02992 292 QQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQA 356 (481)
T ss_pred CCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcc
Confidence 999999998531100 0 0111225899999999999999989999999999986
No 9
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.5e-51 Score=386.45 Aligned_cols=354 Identities=62% Similarity=1.131 Sum_probs=246.4
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhh--hcCCCcceeeeeCCCccCCCCCCCCc
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERAN--ELGIELDVKTIKFPSVEAGLPDGCEN 84 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (367)
+.||+++|+|++||++|+++||++|++||++|||++++.+...+.+...... ..+..+++..+++|..++++|++.+.
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~ 84 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCEN 84 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccc
Confidence 5799999999999999999999999999999999999977654443321100 00112455566665433456665433
Q ss_pred ccccc---hhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhhhh
Q 041444 85 LDAIT---NEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLR 161 (367)
Q Consensus 85 ~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 161 (367)
..... ......+...+....+.+.+.+++++++.++||||+|.++.|+..+|+++|||.+.||+++++....++.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~~ 164 (482)
T PLN03007 85 VDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCIR 164 (482)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHHH
Confidence 21100 000002333444555667888888888778999999999999999999999999999999988766555433
Q ss_pred hhcCCCCCCCCCCceecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHhhhccceEEecccccccHHHHHHHHHh
Q 041444 162 LYEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESESRSYGVAVNSFYELEPAYADHYRKA 241 (367)
Q Consensus 162 ~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~~~~~ 241 (367)
...+............+||+|..+.++..+++.. .. ...+..++....+...+++++++|||.+||.++.+++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~ 240 (482)
T PLN03007 165 VHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA---DE-ESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSF 240 (482)
T ss_pred hcccccccCCCCceeeCCCCCCccccCHHhcCCC---CC-chhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhc
Confidence 2211111111112334788875333455555542 21 1223444555555677889999999999999988888765
Q ss_pred cCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q 041444 242 LGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLEASGRNFIWV 321 (367)
Q Consensus 242 ~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~~~~~lW~ 321 (367)
...++++|||+............+....+..+.+|.+|||+++++|||||||||+..++.+++.+++.||+.++++|||+
T Consensus 241 ~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~ 320 (482)
T PLN03007 241 VAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWV 320 (482)
T ss_pred cCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 55679999998653211000000011111235789999999988999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 322 VRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 322 ~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
++..... .+....+|+||++|++++|+++.+|+||.+||+|++
T Consensus 321 ~~~~~~~---~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~ 363 (482)
T PLN03007 321 VRKNENQ---GEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQA 363 (482)
T ss_pred EecCCcc---cchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCc
Confidence 9864211 011124899999999999999989999999999985
No 10
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.6e-51 Score=381.19 Aligned_cols=331 Identities=23% Similarity=0.406 Sum_probs=237.3
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCCCcchh--hhhHhhhhhcCCCcceeeeeCCCccCCC-CCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTPANAPYV--SKSVERANELGIELDVKTIKFPSVEAGL-PDG 81 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~r-Gh~Vt~~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 81 (367)
.++||+++|+|++||++||++||+.|+.| |..||++++......+ ....+... ....++++.+|++.. +++ +.+
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~-~~l~~~~ 79 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA-ARTTCQITEIPSVDV-DNLVEPD 79 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc-CCCceEEEECCCCcc-ccCCCCC
Confidence 46799999999999999999999999987 9999999887654322 11111100 011488888875432 122 111
Q ss_pred CCcccccchhhhHHHHHHHHHHHHhhHHHHHHHhhhC--CCCEEEecCCCccHHHHHHHhCCC-eEEEecchhhHHHHHh
Q 041444 82 CENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRDH--KPDCLVADIFFPWATDAAAKFGIP-RLVFHGTSFFSLCASN 158 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~D~vi~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~ 158 (367)
. .....+......+.+.+++++++. +++|||+|.|+.|+.++|+++||| .++|++++++....++
T Consensus 80 ---~---------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~ 147 (470)
T PLN03015 80 ---A---------TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMV 147 (470)
T ss_pred ---c---------cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHH
Confidence 0 112234445556677788877753 689999999999999999999999 6888898888776766
Q ss_pred hhhhhcCC-CC-CCCCCCceecCCCCCcccccccCCCcccccCCCCh-hHHHHHHHHHHhhhccceEEecccccccHHHH
Q 041444 159 CLRLYEPH-KK-VSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDN-DLSRLLKATNESESRSYGVAVNSFYELEPAYA 235 (367)
Q Consensus 159 ~~~~~~~~-~~-~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~ 235 (367)
+++..... .. ....+.+..+||+|. ++.+++|.+. ..... .+..++ +..+.+.+++++++|||+|||+.++
T Consensus 148 ~l~~~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~--~~~~~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE~~~~ 221 (470)
T PLN03015 148 YLPVLDTVVEGEYVDIKEPLKIPGCKP---VGPKELMETM--LDRSDQQYKECV-RSGLEVPMSDGVLVNTWEELQGNTL 221 (470)
T ss_pred hhhhhhcccccccCCCCCeeeCCCCCC---CChHHCCHhh--cCCCcHHHHHHH-HHHHhcccCCEEEEechHHHhHHHH
Confidence 66532111 11 001123456899975 7888888651 12221 233333 3334567899999999999999999
Q ss_pred HHHHHhc------CCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHH
Q 041444 236 DHYRKAL------GRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIAT 309 (367)
Q Consensus 236 ~~~~~~~------~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~ 309 (367)
+++++.. .+++++|||++..... ...+.+|.+|||+++++|||||||||+..++.+|++|++.
T Consensus 222 ~~l~~~~~~~~~~~~~v~~VGPl~~~~~~-----------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~ 290 (470)
T PLN03015 222 AALREDMELNRVMKVPVYPIGPIVRTNVH-----------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAW 290 (470)
T ss_pred HHHHhhcccccccCCceEEecCCCCCccc-----------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHH
Confidence 9987642 2579999999742110 0134579999999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEEecCCCC-----CCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 310 GLEASGRNFIWVVRKNKND-----GGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 310 al~~~~~~~lW~~~~~~~~-----~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
||+.++++|||+++.+... ..+++..+.+|+||+||+++||+++.+|+||.+||+||+
T Consensus 291 gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~ 353 (470)
T PLN03015 291 GLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRS 353 (470)
T ss_pred HHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCc
Confidence 9999999999999853210 000112225899999999999988889999999999986
No 11
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=2.4e-51 Score=380.29 Aligned_cols=339 Identities=24% Similarity=0.427 Sum_probs=231.1
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEE--EeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRG--VKASV--ITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPD 80 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rG--h~Vt~--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
+++.||+++|+|++||++||++||+.|+.|| +.||+ +++..+...+.+.+.......++++++.+|++. ..+.
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~~~~ 77 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVT---PYSS 77 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCC---CCCC
Confidence 3578999999999999999999999999998 55665 444432211111111100011258888887421 1111
Q ss_pred CCCcccccchhhhHHHHHHHHHHHHhhHHHHHHHhhh----CCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHH
Q 041444 81 GCENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRD----HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCA 156 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 156 (367)
+... .. .....+......+.+.+++++++ .+++|||+|.|+.|+..+|+++|||.+.|++++++.+..
T Consensus 78 ~~~~--~~------~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~ 149 (451)
T PLN03004 78 SSTS--RH------HHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAF 149 (451)
T ss_pred cccc--cc------CHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHH
Confidence 1111 10 11112222233344445555543 346999999999999999999999999999999998888
Q ss_pred HhhhhhhcCCC-CCC-CCCCceecCCCCCcccccccCCCcccccCCCCh-hHHHHHHHHHHhhhccceEEecccccccHH
Q 041444 157 SNCLRLYEPHK-KVS-SDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDN-DLSRLLKATNESESRSYGVAVNSFYELEPA 233 (367)
Q Consensus 157 ~~~~~~~~~~~-~~~-~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~nt~~~le~~ 233 (367)
+.+++...... ... .+..+..+||+|. ++..++|.+ .+... .....+......+.+++++++|||+|||+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~ 223 (451)
T PLN03004 150 SFYLPTIDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKA---VLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENR 223 (451)
T ss_pred HHHHHhccccccccccccCCeecCCCCCC---CChHHCchh---hcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHH
Confidence 77765321100 000 0112346888875 788889976 33221 222333444455677889999999999999
Q ss_pred HHHHHHHhcC-CceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHH
Q 041444 234 YADHYRKALG-RRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLE 312 (367)
Q Consensus 234 ~~~~~~~~~~-~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~ 312 (367)
+++++++... +++++|||++...... . . . ...+.+|.+|||+++++|||||||||+..++.+|+++++.||+
T Consensus 224 ~l~~l~~~~~~~~v~~vGPl~~~~~~~--~---~-~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~ 296 (451)
T PLN03004 224 AIKAITEELCFRNIYPIGPLIVNGRIE--D---R-N-DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLE 296 (451)
T ss_pred HHHHHHhcCCCCCEEEEeeeccCcccc--c---c-c-cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 9999876432 6899999997532111 0 0 0 1124579999999999999999999999999999999999999
Q ss_pred hCCCcEEEEEecCCCCCC-CCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 313 ASGRNFIWVVRKNKNDGG-EGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 313 ~~~~~~lW~~~~~~~~~~-~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
.++++|||+++.+..... ..+..+.+|++|+||++++|+++.+|+||.+||+|++
T Consensus 297 ~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~ 352 (451)
T PLN03004 297 KSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKA 352 (451)
T ss_pred HCCCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCc
Confidence 999999999995321000 0011213899999999999999889999999999986
No 12
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2.1e-50 Score=375.10 Aligned_cols=336 Identities=23% Similarity=0.402 Sum_probs=233.4
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEEEeCCCCc-chhhhhHhhhhhcCCCcceeeeeCCCccCCCCCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRG--VKASVITTPANA-PYVSKSVERANELGIELDVKTIKFPSVEAGLPDG 81 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rG--h~Vt~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (367)
|+++||+++|+|++||++||++||+.|+.|| ..||++++..+. ..+...+.........++|+.+|... ..+..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~~~~~ 77 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELE---EKPTL 77 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCC---CCCcc
Confidence 3568999999999999999999999999998 999999988754 22222221100011258888887311 01110
Q ss_pred CCcccccchhhhHHHHHHHHHHH-HhhHHHHHHHhhh-----CCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHH
Q 041444 82 CENLDAITNEVNKELIVKFLGAT-TKLQEPLEQLLRD-----HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLC 155 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~-----~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 155 (367)
....... ..+..+...+ ..+.+.+++++++ .+++|||+|.|+.|+.++|+++|||.+.|++++++...
T Consensus 78 -~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~ 151 (468)
T PLN02207 78 -GGTQSVE-----AYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLA 151 (468)
T ss_pred -ccccCHH-----HHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHH
Confidence 0110000 1111111111 1224455555543 23489999999999999999999999999999998887
Q ss_pred HHhhhhhhcC-CCCC--CCCCCceecCCC-CCcccccccCCCcccccCCCChhHHHHHHHHHHhhhccceEEeccccccc
Q 041444 156 ASNCLRLYEP-HKKV--SSDSEPFVMPHF-PGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESESRSYGVAVNSFYELE 231 (367)
Q Consensus 156 ~~~~~~~~~~-~~~~--~~~~~~~~~p~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le 231 (367)
.+.+++.... .... +..+.+..+||+ +. ++..++|.+ +.....+..+. +....+.+++++++|||++||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~---~~~~~~~~~~~-~~~~~~~~~~~vlvNtf~~LE 224 (468)
T PLN02207 152 MMQYLADRHSKDTSVFVRNSEEMLSIPGFVNP---VPANVLPSA---LFVEDGYDAYV-KLAILFTKANGILVNSSFDIE 224 (468)
T ss_pred HHHHhhhccccccccCcCCCCCeEECCCCCCC---CChHHCcch---hcCCccHHHHH-HHHHhcccCCEEEEEchHHHh
Confidence 7766643211 1111 111233568998 44 788899976 33222233333 333456789999999999999
Q ss_pred HHHHHHHHH-hcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHH
Q 041444 232 PAYADHYRK-ALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATG 310 (367)
Q Consensus 232 ~~~~~~~~~-~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~a 310 (367)
.++++++++ ...+++++|||++....... .......+++|.+|||+++++|||||||||+..++.+++++++.|
T Consensus 225 ~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~-----~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~ 299 (468)
T PLN02207 225 PYSVNHFLDEQNYPSVYAVGPIFDLKAQPH-----PEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHG 299 (468)
T ss_pred HHHHHHHHhccCCCcEEEecCCcccccCCC-----CccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHH
Confidence 999988864 23478999999986432110 000001246799999999989999999999999999999999999
Q ss_pred HHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 311 LEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 311 l~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
|++++++|||+++++.. ...+.+|+||++|+++||+|+ +|+||.+||+||+
T Consensus 300 l~~~~~~flW~~r~~~~-----~~~~~lp~~f~er~~~~g~i~-~W~PQ~~IL~H~~ 350 (468)
T PLN02207 300 LELCQYRFLWSLRTEEV-----TNDDLLPEGFLDRVSGRGMIC-GWSPQVEILAHKA 350 (468)
T ss_pred HHHCCCcEEEEEeCCCc-----cccccCCHHHHhhcCCCeEEE-EeCCHHHHhcccc
Confidence 99999999999985321 111258999999999999988 9999999999986
No 13
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=3.1e-50 Score=378.05 Aligned_cols=332 Identities=25% Similarity=0.433 Sum_probs=236.7
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCC----CeEEEEeCCCCcc----hhhhhHhhhhhcCCCcceeeeeCCCccCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRG----VKASVITTPANAP----YVSKSVERANELGIELDVKTIKFPSVEAG 77 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rG----h~Vt~~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (367)
.++||+++|+|++||++||++||+.|+.|| +.|||+++..+.. .+.+.+......+..++++.+|.+ .
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~----~ 77 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAV----E 77 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCC----C
Confidence 567999999999999999999999999997 7999999876432 222222111101124788887742 1
Q ss_pred CCCCCCcccccchhhhHHHHHHHHHHHHhhHHHHHHHhhhC--CCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHH
Q 041444 78 LPDGCENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRDH--KPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLC 155 (367)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 155 (367)
.+++.+.. . ..+......+.+.+++++++. +++|||+|.|+.|+.++|+++|||.+.|++++++.+.
T Consensus 78 ~p~~~e~~---------~--~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~ 146 (480)
T PLN00164 78 PPTDAAGV---------E--EFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLA 146 (480)
T ss_pred CCCccccH---------H--HHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHH
Confidence 23222110 1 112223345566777777653 5699999999999999999999999999999999888
Q ss_pred HHhhhhhhcCCC--CCCCCCCceecCCCCCcccccccCCCcccccCCCC-h-hHHHHHHHHHHhhhccceEEeccccccc
Q 041444 156 ASNCLRLYEPHK--KVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGD-N-DLSRLLKATNESESRSYGVAVNSFYELE 231 (367)
Q Consensus 156 ~~~~~~~~~~~~--~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~l~nt~~~le 231 (367)
.+++++...... .......+..+||+|. ++..++|.+ .... + .+..+ ....+.+.+++++++|||+|||
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~---~~~~~~~~~~~~-~~~~~~~~~~~~vlvNTf~eLE 219 (480)
T PLN00164 147 LMLRLPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAP---VMDKKSPNYAWF-VYHGRRFMEAAGIIVNTAAELE 219 (480)
T ss_pred HHhhhhhhcccccCcccccCcceecCCCCC---CChHHCCch---hcCCCcHHHHHH-HHHHHhhhhcCEEEEechHHhh
Confidence 777765321100 0111012345888875 788889876 3222 1 22222 2334456788999999999999
Q ss_pred HHHHHHHHHhc------CCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHH
Q 041444 232 PAYADHYRKAL------GRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLM 305 (367)
Q Consensus 232 ~~~~~~~~~~~------~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~ 305 (367)
+.+++++++.. .++++.|||++...... .....+++|.+|||+++++|||||||||+..++.+|++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~--------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ 291 (480)
T PLN00164 220 PGVLAAIADGRCTPGRPAPTVYPIGPVISLAFTP--------PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVR 291 (480)
T ss_pred HHHHHHHHhccccccCCCCceEEeCCCccccccC--------CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHH
Confidence 99999987642 15899999997532110 00124678999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEecCCCC----CCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 306 EIATGLEASGRNFIWVVRKNKND----GGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 306 ~~~~al~~~~~~~lW~~~~~~~~----~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
+++.||++++++|||+++..... ..+....+.+|+||++|+++||+++.+|+||.+||+|++
T Consensus 292 ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~ 357 (480)
T PLN00164 292 EIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAA 357 (480)
T ss_pred HHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcc
Confidence 99999999999999999854210 000111224899999999999999989999999999986
No 14
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=3.7e-50 Score=375.12 Aligned_cols=343 Identities=26% Similarity=0.438 Sum_probs=237.1
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhh--hHhhhhhcCCCcceeeeeCCCccCCC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSK--SVERANELGIELDVKTIKFPSVEAGL 78 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (367)
|.+...++||+++|+|++||++||+.||+.|+.||..|||++++.+...+.+ ...........+.++.++. ..+++
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~--~pdgl 78 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEF--FEDGW 78 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEee--CCCCC
Confidence 8888889999999999999999999999999999999999999976544332 1100000001122233321 01356
Q ss_pred CCCCCcccccchhhhHHHHHHHHHHH-HhhHHHHHHHhhh-----CCCCEEEecCCCccHHHHHHHhCCCeEEEecchhh
Q 041444 79 PDGCENLDAITNEVNKELIVKFLGAT-TKLQEPLEQLLRD-----HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFF 152 (367)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~-----~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 152 (367)
|++.+... .. ..+.... ..+.+.+++++++ .+++|||+|.|+.|+.++|+++|||.++||+++++
T Consensus 79 p~~~~~~~--------~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~ 149 (480)
T PLN02555 79 AEDDPRRQ--------DL-DLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCA 149 (480)
T ss_pred CCCccccc--------CH-HHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHH
Confidence 65433211 11 1222222 2345555555542 23599999999999999999999999999999999
Q ss_pred HHHHHhhhhhhc-CCCCCCCCCCceecCCCCCcccccccCCCcccccCCC---ChhHHHHHHHHHHhhhccceEEecccc
Q 041444 153 SLCASNCLRLYE-PHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMG---DNDLSRLLKATNESESRSYGVAVNSFY 228 (367)
Q Consensus 153 ~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~nt~~ 228 (367)
.+..+++++... +......++.+..+||+|. ++.+++|.+ +.. .+.+...+.+..+...+++++++|||+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~ 223 (480)
T PLN02555 150 CFSAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSF---LHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQ 223 (480)
T ss_pred HHHHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCccc---ccCCCCchHHHHHHHHHHHhcccCCEEEEEchH
Confidence 888777664211 1111111123356899985 788899986 332 112222333444456788999999999
Q ss_pred cccHHHHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHH
Q 041444 229 ELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIA 308 (367)
Q Consensus 229 ~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~ 308 (367)
+||+.+++++++.. + ++.|||++....... . ......+..+.+|.+|||+++++|||||||||+..++.+++++++
T Consensus 224 eLE~~~~~~l~~~~-~-v~~iGPl~~~~~~~~-~-~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela 299 (480)
T PLN02555 224 ELEKEIIDYMSKLC-P-IKPVGPLFKMAKTPN-S-DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIA 299 (480)
T ss_pred HHhHHHHHHHhhCC-C-EEEeCcccCcccccc-c-cccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHH
Confidence 99999999887643 4 999999975321100 0 000111224578999999998899999999999999999999999
Q ss_pred HHHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 309 TGLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 309 ~al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
.||++++++|||+++...... +.....+|++|++++++||+++ +|+||.+||+||+
T Consensus 300 ~~l~~~~~~flW~~~~~~~~~--~~~~~~lp~~~~~~~~~~g~v~-~W~PQ~~iL~H~~ 355 (480)
T PLN02555 300 YGVLNSGVSFLWVMRPPHKDS--GVEPHVLPEEFLEKAGDKGKIV-QWCPQEKVLAHPS 355 (480)
T ss_pred HHHHhcCCeEEEEEecCcccc--cchhhcCChhhhhhcCCceEEE-ecCCHHHHhCCCc
Confidence 999999999999998531100 0001248999999999999988 8999999999986
No 15
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=4.6e-50 Score=372.13 Aligned_cols=329 Identities=22% Similarity=0.373 Sum_probs=227.9
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCc
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFAT-RGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCEN 84 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~-rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (367)
.++||+++|+|++||++||++||+.|+. +|+.|||+++..+.. +....... ...+++|+.++ ++++++.+.
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~--~~~~~~~~-~~~~i~~~~i~-----dglp~g~~~ 73 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH--RSMIPNHN-NVENLSFLTFS-----DGFDDGVIS 73 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh--hhhhccCC-CCCCEEEEEcC-----CCCCCcccc
Confidence 4579999999999999999999999996 799999999985311 11111000 01247788775 466654321
Q ss_pred ccccchhhhHHHHHHHHHHHHhhHHHHHHHhhh-----CCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhh
Q 041444 85 LDAITNEVNKELIVKFLGATTKLQEPLEQLLRD-----HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNC 159 (367)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 159 (367)
... .....+......+.+.+++++++ .+++|||+|.++.|+.++|+++|||.+.||+++++.+..+++
T Consensus 74 ~~~-------~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~ 146 (455)
T PLN02152 74 NTD-------DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYN 146 (455)
T ss_pred ccc-------cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHH
Confidence 110 11222333333444555555543 345999999999999999999999999999999998887766
Q ss_pred hhhhcCCCCCCCCCCceecCCCCCcccccccCCCcccccCCCC---hhHHHHHHHHHHhhh--ccceEEecccccccHHH
Q 041444 160 LRLYEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGD---NDLSRLLKATNESES--RSYGVAVNSFYELEPAY 234 (367)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~l~nt~~~le~~~ 234 (367)
++... +....+||+|. ++.+++|.+ .... ......+.+..+... .++++++|||++||+.+
T Consensus 147 ~~~~~--------~~~~~iPglp~---l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 212 (455)
T PLN02152 147 YSTGN--------NSVFEFPNLPS---LEIRDLPSF---LSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEF 212 (455)
T ss_pred hhccC--------CCeeecCCCCC---CchHHCchh---hcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHH
Confidence 54210 12345888875 678889987 3321 122233333333333 24699999999999999
Q ss_pred HHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhC
Q 041444 235 ADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLEAS 314 (367)
Q Consensus 235 ~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~ 314 (367)
+++++. .++++|||+++...............+..+.+|.+|||+++++|||||||||+..++.+|+++++.||+++
T Consensus 213 ~~~l~~---~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s 289 (455)
T PLN02152 213 LTAIPN---IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEG 289 (455)
T ss_pred HHhhhc---CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHc
Confidence 988864 36999999975321000000000000113457999999998899999999999999999999999999999
Q ss_pred CCcEEEEEecCCCCC----CCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 315 GRNFIWVVRKNKNDG----GEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 315 ~~~~lW~~~~~~~~~----~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
+++|||+++++.... +++.....+|++|+||+++||+|+ +|+||.+||+||+
T Consensus 290 ~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~-~W~PQ~~iL~h~~ 345 (455)
T PLN02152 290 KRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIV-SWCSQIEVLRHRA 345 (455)
T ss_pred CCCeEEEEecCcccccccccccccccccchhHHHhccCCeEEE-eeCCHHHHhCCcc
Confidence 999999998632110 000000025899999999999998 9999999999986
No 16
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-49 Score=371.69 Aligned_cols=324 Identities=25% Similarity=0.442 Sum_probs=232.5
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCc
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCEN 84 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (367)
..++||+++|+|++||++||++||+.|+.||++||++|+..+...+.+.... ..+++++.+|. +++++.
T Consensus 4 ~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~----~~~i~~v~lp~-----g~~~~~-- 72 (448)
T PLN02562 4 TQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP----KLGITFMSISD-----GQDDDP-- 72 (448)
T ss_pred CCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC----CCCEEEEECCC-----CCCCCc--
Confidence 4467999999999999999999999999999999999998765444332110 12478887762 333211
Q ss_pred ccccchhhhHHHHHHHHHHHH-hhHHHHHHHhhh----CCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhh
Q 041444 85 LDAITNEVNKELIVKFLGATT-KLQEPLEQLLRD----HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNC 159 (367)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~----~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 159 (367)
+. +.. .+..++. .+.+.+++++++ .+++|||+|.|+.|+.++|+++|||.+.||+++++.+..+++
T Consensus 73 ----~~----~~~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~ 143 (448)
T PLN02562 73 ----PR----DFF-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQA 143 (448)
T ss_pred ----cc----cHH-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHH
Confidence 00 111 2333443 456667666664 235899999999999999999999999999999987776665
Q ss_pred hhhhcCCCCCCC-----CCCc-eecCCCCCcccccccCCCcccccCCC---ChhHHHHHHHHHHhhhccceEEecccccc
Q 041444 160 LRLYEPHKKVSS-----DSEP-FVMPHFPGEIKLTRNQLPDFVKQDMG---DNDLSRLLKATNESESRSYGVAVNSFYEL 230 (367)
Q Consensus 160 ~~~~~~~~~~~~-----~~~~-~~~p~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~nt~~~l 230 (367)
++.....+.... ...+ ..+||+|. ++..++|.+ +.. .......+.+..+...+++++++|||+||
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eL 217 (448)
T PLN02562 144 IPELVRTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWL---IGTPKARKARFKFWTRTLERTKSLRWILMNSFKDE 217 (448)
T ss_pred HHHHhhccccccccccccccccccCCCCCC---CChhhCcch---hcCCCcchHHHHHHHHHHhccccCCEEEEcChhhh
Confidence 543211110100 0112 25788875 677888876 321 11222333444456677889999999999
Q ss_pred cHHHHHHHHHh----cCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCC-CCCHHHHH
Q 041444 231 EPAYADHYRKA----LGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLA-NFTSAQLM 305 (367)
Q Consensus 231 e~~~~~~~~~~----~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~-~~~~~~~~ 305 (367)
|+.+++.++.. ..+++++|||++...... .........+.+|.+|||+++++|||||||||+. .++.++++
T Consensus 218 E~~~~~~~~~~~~~~~~~~v~~iGpl~~~~~~~----~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~ 293 (448)
T PLN02562 218 EYDDVKNHQASYNNGQNPQILQIGPLHNQEATT----ITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVR 293 (448)
T ss_pred CHHHHHHHHhhhccccCCCEEEecCcccccccc----cCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHH
Confidence 99888766532 347899999998643210 0000011234678999999988999999999987 68999999
Q ss_pred HHHHHHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 306 EIATGLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 306 ~~~~al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
+++.||+++|++|||+++.... +.+|++|++++++||+++ +|+||.+||+||+
T Consensus 294 ~l~~~l~~~g~~fiW~~~~~~~--------~~l~~~~~~~~~~~~~v~-~w~PQ~~iL~h~~ 346 (448)
T PLN02562 294 TLALALEASGRPFIWVLNPVWR--------EGLPPGYVERVSKQGKVV-SWAPQLEVLKHQA 346 (448)
T ss_pred HHHHHHHHCCCCEEEEEcCCch--------hhCCHHHHHHhccCEEEE-ecCCHHHHhCCCc
Confidence 9999999999999999986421 148999999999999998 8999999999986
No 17
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.7e-49 Score=367.84 Aligned_cols=316 Identities=26% Similarity=0.425 Sum_probs=225.6
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCC-CCc
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDG-CEN 84 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 84 (367)
++.||+++|+|++||++||++||+.|+.+|+.|||++++.+...+... ....++++.++ +++|++ .+.
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ip-----dglp~~~~~~ 72 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATIS-----DGYDQGGFSS 72 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcC-----CCCCCccccc
Confidence 467999999999999999999999999999999999998755433221 02348888876 466653 222
Q ss_pred ccccchhhhHHHHHHHHHHH-HhhHHHHHHHhhh----CCC-CEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHh
Q 041444 85 LDAITNEVNKELIVKFLGAT-TKLQEPLEQLLRD----HKP-DCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASN 158 (367)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~----~~~-D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 158 (367)
.. . +..+.... ..+.+.+++++++ .++ +|||+|.|+.|+.++|+++|||.+.||+++++....++
T Consensus 73 ~~--------~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~ 143 (449)
T PLN02173 73 AG--------S-VPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINY 143 (449)
T ss_pred cc--------C-HHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHH
Confidence 11 1 11222222 2455666666654 244 99999999999999999999999999999988775544
Q ss_pred hhhhhcCCCCCCCCCCceecCCCCCcccccccCCCcccccCCC---ChhHHHHHHHHHHhhhccceEEecccccccHHHH
Q 041444 159 CLRLYEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMG---DNDLSRLLKATNESESRSYGVAVNSFYELEPAYA 235 (367)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~ 235 (367)
+.. .. . .+....+||+|. ++.+++|.+ +.. ...+...+.+..+...+++++++|||+|||++++
T Consensus 144 ~~~-~~---~---~~~~~~~pg~p~---l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 210 (449)
T PLN02173 144 LSY-IN---N---GSLTLPIKDLPL---LELQDLPTF---VTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHEN 210 (449)
T ss_pred hHH-hc---c---CCccCCCCCCCC---CChhhCChh---hcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHH
Confidence 321 10 0 112234788875 678889876 332 1122233334445667899999999999999999
Q ss_pred HHHHHhcCCceEEeCcCCCCCc--CchhhhhcCC-CCC--cchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHH
Q 041444 236 DHYRKALGRRAWHIGPVSLCNR--NFEDKALRGK-QAS--IDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATG 310 (367)
Q Consensus 236 ~~~~~~~~~~v~~vGpl~~~~~--~~~~~~~~~~-~~~--~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~a 310 (367)
+++++. +++++|||+++... .......... ..+ ..+++|.+|||+++++|||||||||+..++.+++++++.|
T Consensus 211 ~~~~~~--~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~g 288 (449)
T PLN02173 211 ELLSKV--CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASA 288 (449)
T ss_pred HHHHhc--CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHH
Confidence 988753 47999999975310 0000000000 001 1245699999999999999999999999999999999999
Q ss_pred HHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhC-CCceEecCcccHHHhhcCCC
Q 041444 311 LEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRME-GKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 311 l~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~-~~g~vv~~W~PQ~~vL~Hpa 367 (367)
| ++++|||+++.+.. +.+|++|+++++ ++|+++ +|+||.+||+|++
T Consensus 289 L--s~~~flWvvr~~~~--------~~lp~~~~~~~~~~~~~i~-~W~PQ~~iL~H~~ 335 (449)
T PLN02173 289 I--SNFSYLWVVRASEE--------SKLPPGFLETVDKDKSLVL-KWSPQLQVLSNKA 335 (449)
T ss_pred h--cCCCEEEEEeccch--------hcccchHHHhhcCCceEEe-CCCCHHHHhCCCc
Confidence 9 78899999985421 148999999995 556666 9999999999986
No 18
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=2.1e-48 Score=363.52 Aligned_cols=330 Identities=25% Similarity=0.435 Sum_probs=231.2
Q ss_pred CCCCC-CccEEEEEcCCCcccHHHHHHHHHH--HHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCC
Q 041444 1 MGSKI-PQLHVFFFPFMAHGHMIPIVDMAKL--FATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAG 77 (367)
Q Consensus 1 m~~~~-~~~~vl~~p~p~~gH~~p~l~La~~--L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (367)
|++.. .+.||+++|+|++||++|+++||++ |++||++|||++++.+.+.++.. . .....+++..++ ++
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~-~---~~~~~~~~~~~~-----~g 71 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTV-E---KPRRPVDLVFFS-----DG 71 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccc-c---CCCCceEEEECC-----CC
Confidence 55554 4679999999999999999999999 56999999999999765443221 0 001123333332 35
Q ss_pred CCCCCCcccccchhhhHHHHHHHHHHH-HhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHH
Q 041444 78 LPDGCENLDAITNEVNKELIVKFLGAT-TKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCA 156 (367)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 156 (367)
+|++.+. ... .+...+ +.+.+.+++++++.++||||+|.++.|+..+|+++|||.+.||++++..+..
T Consensus 72 lp~~~~~----------~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~ 140 (456)
T PLN02210 72 LPKDDPR----------APE-TLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSV 140 (456)
T ss_pred CCCCccc----------CHH-HHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHH
Confidence 6654321 111 122222 3446677888877789999999999999999999999999999999988877
Q ss_pred Hhhhhhh-cCCCCCCCCCCceecCCCCCcccccccCCCcccccCCCCh--hHHHHHHHHHHhhhccceEEecccccccHH
Q 041444 157 SNCLRLY-EPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDN--DLSRLLKATNESESRSYGVAVNSFYELEPA 233 (367)
Q Consensus 157 ~~~~~~~-~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~nt~~~le~~ 233 (367)
+++++.. .........+....+||++. ++..+++.+ +.... .+.....++.+....++++++|||++||++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 214 (456)
T PLN02210 141 YYRYYMKTNSFPDLEDLNQTVELPALPL---LEVRDLPSF---MLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESE 214 (456)
T ss_pred HHhhhhccCCCCcccccCCeeeCCCCCC---CChhhCChh---hhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHH
Confidence 6654321 11111110112345788864 677788875 32221 133333344444567889999999999999
Q ss_pred HHHHHHHhcCCceEEeCcCCCCC--cCchhhhhcCC--CCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHH
Q 041444 234 YADHYRKALGRRAWHIGPVSLCN--RNFEDKALRGK--QASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIAT 309 (367)
Q Consensus 234 ~~~~~~~~~~~~v~~vGpl~~~~--~~~~~~~~~~~--~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~ 309 (367)
+++++++ . +++++|||+++.. .........+. ..+..+.+|.+|||+++++|||||||||+...+.+++++++.
T Consensus 215 ~~~~l~~-~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~ 292 (456)
T PLN02210 215 IIESMAD-L-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAK 292 (456)
T ss_pred HHHHHhh-c-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHH
Confidence 9998876 3 6899999997521 00000000000 012246679999999988999999999999999999999999
Q ss_pred HHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhh-CCCceEecCcccHHHhhcCCC
Q 041444 310 GLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRM-EGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 310 al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~-~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
||+.++++|||+++.+... ..++.|++++ ++||+|+ +|+||.+||+|++
T Consensus 293 ~l~~~~~~flw~~~~~~~~--------~~~~~~~~~~~~~~g~v~-~w~PQ~~iL~h~~ 342 (456)
T PLN02210 293 ALKNRGVPFLWVIRPKEKA--------QNVQVLQEMVKEGQGVVL-EWSPQEKILSHMA 342 (456)
T ss_pred HHHhCCCCEEEEEeCCccc--------cchhhHHhhccCCCeEEE-ecCCHHHHhcCcC
Confidence 9999999999999854211 2456788888 4999888 9999999999985
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.2e-48 Score=363.82 Aligned_cols=341 Identities=25% Similarity=0.400 Sum_probs=227.2
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCC---eEEEEeCCCCcc-hhhhhHhhhhhcCCCcceeeeeCCCccCCCCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGV---KASVITTPANAP-YVSKSVERANELGIELDVKTIKFPSVEAGLPD 80 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh---~Vt~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
++++||+++|+|++||++||++||+.|+.||. .||++++..... .....+........+++|+.+|++. . +.
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~-p~ 76 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQ---D-PP 76 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCC---C-Cc
Confidence 36789999999999999999999999999994 466666543321 1111111100011258888887532 1 21
Q ss_pred CCCcccccchhhhHHHHHHHHH-HHHhhHHHHHHHhhh-----C-CCCEEEecCCCccHHHHHHHhCCCeEEEecchhhH
Q 041444 81 GCENLDAITNEVNKELIVKFLG-ATTKLQEPLEQLLRD-----H-KPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFS 153 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~-----~-~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 153 (367)
+.+....... ..+..+.. ....+.+.+++++.+ . +++|||+|.|+.|+.++|+++|||.+.||+++++.
T Consensus 77 ~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~ 152 (475)
T PLN02167 77 PMELFVKASE----AYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGF 152 (475)
T ss_pred cccccccchH----HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHH
Confidence 1110000000 11111222 122334444444422 1 45999999999999999999999999999999988
Q ss_pred HHHHhhhhhhc-CCC-CC--CCCCCceecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHhhhccceEEeccccc
Q 041444 154 LCASNCLRLYE-PHK-KV--SSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESESRSYGVAVNSFYE 229 (367)
Q Consensus 154 ~~~~~~~~~~~-~~~-~~--~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~ 229 (367)
+..+++++... ... .. ...+.+..+||++.. ++..++|.+ .+....+. .+.+..+...+++++++|||++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~---~~~~~~~~-~~~~~~~~~~~a~~vlvNTf~e 226 (475)
T PLN02167 153 LGMMKYLPERHRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPG---LFMKESYE-AWVEIAERFPEAKGILVNSFTE 226 (475)
T ss_pred HHHHHHHHHhccccccccccCCCCCeeECCCCCCC--CChhhCchh---hhCcchHH-HHHHHHHhhcccCEeeeccHHH
Confidence 87776654321 111 10 011223458888432 677788764 22221222 2234445567889999999999
Q ss_pred ccHHHHHHHHHhc--CCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHH
Q 041444 230 LEPAYADHYRKAL--GRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEI 307 (367)
Q Consensus 230 le~~~~~~~~~~~--~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~ 307 (367)
||+++++++++.. .+++++|||+++...... .......+.+|.+|||+++++|||||||||+..++.++++++
T Consensus 227 LE~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~-----~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~el 301 (475)
T PLN02167 227 LEPNAFDYFSRLPENYPPVYPVGPILSLKDRTS-----PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEI 301 (475)
T ss_pred HHHHHHHHHHhhcccCCeeEEeccccccccccC-----CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHH
Confidence 9999999986541 268999999986432100 000011246799999999889999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 308 ATGLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 308 ~~al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
+.||++++++|||+++.+... .......+|+||+||+++||+++ +|+||.+||+||+
T Consensus 302 a~~l~~~~~~flw~~~~~~~~--~~~~~~~lp~~~~er~~~rg~v~-~w~PQ~~iL~h~~ 358 (475)
T PLN02167 302 AQALELVGCRFLWSIRTNPAE--YASPYEPLPEGFMDRVMGRGLVC-GWAPQVEILAHKA 358 (475)
T ss_pred HHHHHhCCCcEEEEEecCccc--ccchhhhCChHHHHHhccCeeee-ccCCHHHHhcCcc
Confidence 999999999999999853210 00111248999999999999988 9999999999986
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.2e-47 Score=361.97 Aligned_cols=334 Identities=26% Similarity=0.444 Sum_probs=230.9
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEEEeCCCCcchh---hhhHhhhhh-cCCCcceeeeeCCCccCCCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRG--VKASVITTPANAPYV---SKSVERANE-LGIELDVKTIKFPSVEAGLPD 80 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rG--h~Vt~~t~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 80 (367)
|.||+++|+|++||++||++||+.|+.|| ..|||++++.+...+ ...+..... ....++++.+|.+. +.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-----~~ 76 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGD-----QP 76 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCC-----CC
Confidence 68999999999999999999999999998 889999998664321 111111000 01248888887421 11
Q ss_pred CCCcccccchhhhHHHHHHHHHHHHhhHHHHHHHhhh------CCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHH
Q 041444 81 GCENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRD------HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSL 154 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~------~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~ 154 (367)
.... . .....+....+.+.+.+++++.+ .+++|||+|.|+.|+.++|+++|||++.||+++++.+
T Consensus 77 ~~~~---~------~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~ 147 (481)
T PLN02554 77 TTED---P------TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFL 147 (481)
T ss_pred cccc---h------HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHH
Confidence 1000 0 11111112222345555555432 1248999999999999999999999999999999998
Q ss_pred HHHhhhhhhcCCC-----CCCCCCCceecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHhhhccceEEeccccc
Q 041444 155 CASNCLRLYEPHK-----KVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESESRSYGVAVNSFYE 229 (367)
Q Consensus 155 ~~~~~~~~~~~~~-----~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~ 229 (367)
..+++++...... .......+..+||++.+ ++..++|.+ .... .....+.+....+.+++++++|||++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~p--l~~~dlp~~---~~~~-~~~~~~~~~~~~~~~~~gvlvNt~~e 221 (481)
T PLN02554 148 GLQLHVQMLYDEKKYDVSELEDSEVELDVPSLTRP--YPVKCLPSV---LLSK-EWLPLFLAQARRFREMKGILVNTVAE 221 (481)
T ss_pred HHHHhhhhhccccccCccccCCCCceeECCCCCCC--CCHHHCCCc---ccCH-HHHHHHHHHHHhcccCCEEEEechHH
Confidence 8877775432110 11111123458887421 677788865 3222 22223334445667899999999999
Q ss_pred ccHHHHHHHHHh--cCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHH
Q 041444 230 LEPAYADHYRKA--LGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEI 307 (367)
Q Consensus 230 le~~~~~~~~~~--~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~ 307 (367)
||+.+.+.+++. ..+++++|||++....... . .....+.+|.+|||+++++|||||||||+..++.++++++
T Consensus 222 Le~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~-----~-~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~l 295 (481)
T PLN02554 222 LEPQALKFFSGSSGDLPPVYPVGPVLHLENSGD-----D-SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREI 295 (481)
T ss_pred HhHHHHHHHHhcccCCCCEEEeCCCcccccccc-----c-cccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHH
Confidence 999998888753 2378999999943221110 0 0012567899999999889999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEecCCCC-----CCC-CCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 308 ATGLEASGRNFIWVVRKNKND-----GGE-GGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 308 ~~al~~~~~~~lW~~~~~~~~-----~~~-~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
+.||++++++|||+++.+... .++ .+..+.+|+||++|+++||+++ +|+||.+||+||+
T Consensus 296 a~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~-~W~PQ~~iL~H~~ 360 (481)
T PLN02554 296 AIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVI-GWAPQVAVLAKPA 360 (481)
T ss_pred HHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEE-eeCCHHHHhCCcc
Confidence 999999999999999863210 000 0111237999999999999998 9999999999986
No 21
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.4e-45 Score=346.66 Aligned_cols=323 Identities=23% Similarity=0.373 Sum_probs=226.8
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGC 82 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~r--Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (367)
+.+.||+++|+|++||++||++||++|++| ||+||+++++.+...+.+... ..+++|+.++. +++++.
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-----~~gi~fv~lp~-----~~p~~~ 77 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-----PDNIRFATIPN-----VIPSEL 77 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-----CCCEEEEECCC-----CCCCcc
Confidence 568899999999999999999999999999 999999999876544433210 12588888762 333322
Q ss_pred CcccccchhhhHHHHHHHHHHHHhhHHHHHHHhhh--CCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhhh
Q 041444 83 ENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRD--HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCL 160 (367)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 160 (367)
+... +....+....+.+.+.+++++++ .++||||+|.++.|+..+|+++|||+|.|+++++..+..+.++
T Consensus 78 ~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~ 149 (459)
T PLN02448 78 VRAA--------DFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHF 149 (459)
T ss_pred cccc--------CHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHh
Confidence 1111 11111122223455566666664 3689999999999999999999999999999999777766665
Q ss_pred hhhcCCCCCCCC-----CC-ceecCCCCCcccccccCCCcccccCCCC-hhHHHHHHHHHHhhhccceEEecccccccHH
Q 041444 161 RLYEPHKKVSSD-----SE-PFVMPHFPGEIKLTRNQLPDFVKQDMGD-NDLSRLLKATNESESRSYGVAVNSFYELEPA 233 (367)
Q Consensus 161 ~~~~~~~~~~~~-----~~-~~~~p~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~ 233 (367)
+........+.+ +. ...+||++. ++..+++.+ .... ......+........+++++++|||+|||+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 223 (459)
T PLN02448 150 DLLPQNGHFPVELSESGEERVDYIPGLSS---TRLSDLPPI---FHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQ 223 (459)
T ss_pred hhhhhccCCCCccccccCCccccCCCCCC---CChHHCchh---hcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHH
Confidence 432111000100 11 124777764 677778865 3222 1212233344445567789999999999999
Q ss_pred HHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHh
Q 041444 234 YADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLEA 313 (367)
Q Consensus 234 ~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~~ 313 (367)
+++++++.++++++.|||+.......... .+. .....+.+|.+|||++++++||||||||+..++.++++++++||++
T Consensus 224 ~~~~l~~~~~~~~~~iGP~~~~~~~~~~~-~~~-~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~ 301 (459)
T PLN02448 224 AIDALKSKFPFPVYPIGPSIPYMELKDNS-SSS-NNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRD 301 (459)
T ss_pred HHHHHHhhcCCceEEecCcccccccCCCc-ccc-ccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHh
Confidence 99999876667899999997532110000 000 0011235799999999889999999999999999999999999999
Q ss_pred CCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 314 SGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 314 ~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
++++|||+++.+ ..+++++..++|+++ +|+||.+||+||+
T Consensus 302 ~~~~~lw~~~~~-------------~~~~~~~~~~~~~v~-~w~pQ~~iL~h~~ 341 (459)
T PLN02448 302 SGVRFLWVARGE-------------ASRLKEICGDMGLVV-PWCDQLKVLCHSS 341 (459)
T ss_pred CCCCEEEEEcCc-------------hhhHhHhccCCEEEe-ccCCHHHHhccCc
Confidence 999999998743 124566666788888 9999999999985
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=2.7e-32 Score=258.44 Aligned_cols=305 Identities=16% Similarity=0.191 Sum_probs=190.2
Q ss_pred CccEEEEE-cCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCc
Q 041444 6 PQLHVFFF-PFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCEN 84 (367)
Q Consensus 6 ~~~~vl~~-p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (367)
...||+++ |.++.||++.+.+++++|++|||+||++++.... ..... . ..+++.+.++... +........
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~~-~-----~~~~~~i~~~~~~--~~~~~~~~~ 89 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYASH-L-----CGNITEIDASLSV--EYFKKLVKS 89 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-ccccC-C-----CCCEEEEEcCCCh--HHHHHHHhh
Confidence 34567744 8899999999999999999999999999886421 00000 0 1234433332100 000000000
Q ss_pred cc------cc-chhhh-HHHHHHHHHHHHh-h-HHHHHHHhh--hCCCCEEEecCCCccHHHHHHHh-CCCeEEEecchh
Q 041444 85 LD------AI-TNEVN-KELIVKFLGATTK-L-QEPLEQLLR--DHKPDCLVADIFFPWATDAAAKF-GIPRLVFHGTSF 151 (367)
Q Consensus 85 ~~------~~-~~~~~-~~~~~~~~~~~~~-~-~~~l~~~l~--~~~~D~vi~D~~~~~~~~~A~~l-giP~v~~~~~~~ 151 (367)
.. .. ..... ......+...|+. + .+.++++++ +.+||+||+|.+..|++.+|+++ |+|.|.++++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 90 SAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 00 00 00000 0011112233432 2 567778887 67899999999999999999999 999998888765
Q ss_pred hHHHHHhhhhhhcCCCCCCCCCCceecCCCCCcccccccCCCcccccCCCChh----------------HHHHHHH----
Q 041444 152 FSLCASNCLRLYEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDND----------------LSRLLKA---- 211 (367)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~---- 211 (367)
....... .+ +.+..++++|.+. ....+-++|+ .|..+. ......+
T Consensus 170 ~~~~~~~----~g-----g~p~~~syvP~~~----~~~~~~Msf~--~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~ 234 (507)
T PHA03392 170 LAENFET----MG-----AVSRHPVYYPNLW----RSKFGNLNVW--ETINEIYTELRLYNEFSLLADEQNKLLKQQFGP 234 (507)
T ss_pred chhHHHh----hc-----cCCCCCeeeCCcc----cCCCCCCCHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCC
Confidence 4332110 01 0123356666544 2333444442 221110 0001111
Q ss_pred ----HHHhhhccceEEecccccccHHHHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCc
Q 041444 212 ----TNESESRSYGVAVNSFYELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNS 287 (367)
Q Consensus 212 ----~~~~~~~~~~~l~nt~~~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~ 287 (367)
..+..++.+.+++|+...++.+ | .++++++.|||++.+.... .++++++++||+++ ++|
T Consensus 235 ~~~~~~~l~~~~~l~lvns~~~~d~~-----r-p~~p~v~~vGgi~~~~~~~----------~~l~~~l~~fl~~~-~~g 297 (507)
T PHA03392 235 DTPTIRELRNRVQLLFVNVHPVFDNN-----R-PVPPSVQYLGGLHLHKKPP----------QPLDDYLEEFLNNS-TNG 297 (507)
T ss_pred CCCCHHHHHhCCcEEEEecCccccCC-----C-CCCCCeeeecccccCCCCC----------CCCCHHHHHHHhcC-CCc
Confidence 1223345567899999988854 3 5679999999998743111 13788999999986 468
Q ss_pred EEEEecCCCC---CCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhc
Q 041444 288 VVYICFGSLA---NFTSAQLMEIATGLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILD 364 (367)
Q Consensus 288 vIyvsfGS~~---~~~~~~~~~~~~al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~ 364 (367)
+|||||||+. .++.++++.+++||++++++|||+++++.. ...+|+|+ +++ +|+||.+||+
T Consensus 298 ~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~-------~~~~p~Nv--------~i~-~w~Pq~~lL~ 361 (507)
T PHA03392 298 VVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE-------AINLPANV--------LTQ-KWFPQRAVLK 361 (507)
T ss_pred EEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC-------cccCCCce--------EEe-cCCCHHHHhc
Confidence 9999999986 478899999999999999999999975421 11378886 555 9999999999
Q ss_pred CCC
Q 041444 365 HEA 367 (367)
Q Consensus 365 Hpa 367 (367)
||.
T Consensus 362 hp~ 364 (507)
T PHA03392 362 HKN 364 (507)
T ss_pred CCC
Confidence 973
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=99.97 E-value=3.3e-34 Score=275.45 Aligned_cols=302 Identities=24% Similarity=0.289 Sum_probs=153.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcc-c
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENL-D 86 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 86 (367)
.||+++|. +.||+++|..|+++|++|||+||++++.... .+.... ...+++..++.+...+......... .
T Consensus 1 ~kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (500)
T PF00201_consen 1 GKVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPSK------PSNIRFETYPDPYPEEEFEEIFPEFIS 72 (500)
T ss_dssp ------------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T------------S-CCEEEE-----TT------TTHHH
T ss_pred CEEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-cccccc------ccceeeEEEcCCcchHHHhhhhHHHHH
Confidence 37889985 7799999999999999999999999975311 111110 2345666665322111111111100 0
Q ss_pred c-c---ch-hhhHHHHHHHHHHHH----hh-----HHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecchhh
Q 041444 87 A-I---TN-EVNKELIVKFLGATT----KL-----QEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFF 152 (367)
Q Consensus 87 ~-~---~~-~~~~~~~~~~~~~~~----~~-----~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 152 (367)
. . .. ......+........ .+ .+.+.+.+++.++|++|+|.+..|+..+|+.+|+|.+.+.++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~ 152 (500)
T PF00201_consen 73 KFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPM 152 (500)
T ss_dssp HHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSC
T ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEeccccc
Confidence 0 0 00 000000100000000 01 122333445568999999999999999999999999876544322
Q ss_pred HHHHHhhhhhhcCCCCCCCCCCceecCCCCCcccccccCCCcccccCCCChhHHHH----HHHH----------------
Q 041444 153 SLCASNCLRLYEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRL----LKAT---------------- 212 (367)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------------- 212 (367)
..... . ....+..++++|... ....+.+++. .|..+.+... ....
T Consensus 153 ~~~~~-----~----~~g~p~~psyvP~~~----s~~~~~msf~--~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (500)
T PF00201_consen 153 YDLSS-----F----SGGVPSPPSYVPSMF----SDFSDRMSFW--QRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFP 217 (500)
T ss_dssp SCCTC-----C----TSCCCTSTTSTTCBC----CCSGTTSSSS--T--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-G
T ss_pred chhhh-----h----ccCCCCChHHhcccc----ccCCCccchh--hhhhhhhhhhhhccccccchhhHHHHHhhhcccc
Confidence 11000 0 000112233444322 1222333331 2223322111 1110
Q ss_pred ---HHhhhccceEEecccccccHHHHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEE
Q 041444 213 ---NESESRSYGVAVNSFYELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVV 289 (367)
Q Consensus 213 ---~~~~~~~~~~l~nt~~~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vI 289 (367)
.+.+.+...+++|+...++ +.++ +.|++++|||++...++ +++.++++|+|+..++|||
T Consensus 218 ~~~~~~~~~~~l~l~ns~~~ld-----~prp-~~p~v~~vGgl~~~~~~------------~l~~~~~~~~~~~~~~~vv 279 (500)
T PF00201_consen 218 FSFRELLSNASLVLINSHPSLD-----FPRP-LLPNVVEVGGLHIKPAK------------PLPEELWNFLDSSGKKGVV 279 (500)
T ss_dssp GGCHHHHHHHHHCCSSTEEE---------HH-HHCTSTTGCGC-S----------------TCHHHHHHHTSTTTTTEEE
T ss_pred cccHHHHHHHHHHhhhccccCc-----CCcc-hhhcccccCcccccccc------------ccccccchhhhccCCCCEE
Confidence 0111222334556666655 3343 44899999999876433 2788999999986678999
Q ss_pred EEecCCCCC-CCHHHHHHHHHHHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 290 YICFGSLAN-FTSAQLMEIATGLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 290 yvsfGS~~~-~~~~~~~~~~~al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
||||||++. ++.++++++++||++++++|||++++... ..+|+|+ +++ +|+||.|||+||+
T Consensus 280 ~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~--------~~l~~n~--------~~~-~W~PQ~~lL~hp~ 341 (500)
T PF00201_consen 280 YVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPP--------ENLPKNV--------LIV-KWLPQNDLLAHPR 341 (500)
T ss_dssp EEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHG--------CHHHTTE--------EEE-SS--HHHHHTSTT
T ss_pred EEecCcccchhHHHHHHHHHHHHhhCCCccccccccccc--------ccccceE--------EEe-ccccchhhhhccc
Confidence 999999874 66667899999999999999999986421 1477885 555 9999999999985
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.95 E-value=1.1e-28 Score=237.16 Aligned_cols=312 Identities=29% Similarity=0.436 Sum_probs=172.2
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcc---eeeeeCCCccCCCCCCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELD---VKTIKFPSVEAGLPDGCE 83 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 83 (367)
+.+++++++|++||++|+..||++|++|||+||++++............ ...+. ....++....++++...+
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSK-----SKSIKKINPPPFEFLTIPDGLPEGWE 79 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCccc-----ceeeeeeecChHHhhhhhhhhccchH
Confidence 6789999999999999999999999999999999998754322111000 00001 011110000011222111
Q ss_pred cccccchhhhHHHHHHHHHHHHh-hHHHHHHHhh--hCCCCEEEecCCCccHHHHHHHhC-CCeEEEecchhhHHHHHhh
Q 041444 84 NLDAITNEVNKELIVKFLGATTK-LQEPLEQLLR--DHKPDCLVADIFFPWATDAAAKFG-IPRLVFHGTSFFSLCASNC 159 (367)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~--~~~~D~vi~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~ 159 (367)
... .... .....+...+.. +......+.. ..++|++|+|.+..|...+|...+ ++...+++.++........
T Consensus 80 ~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~ 155 (496)
T KOG1192|consen 80 DDD-LDIS---ESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLP 155 (496)
T ss_pred HHH-HHHH---HHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCc
Confidence 100 0000 111222223322 2222222222 234999999999778887887775 8888888887765443221
Q ss_pred hhhhcCCCCCCCCCCceecCCCCCcccccccCCCcccccCCCChh----HH-------------HHHHHHHHh----hhc
Q 041444 160 LRLYEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDND----LS-------------RLLKATNES----ESR 218 (367)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~----~~-------------~~~~~~~~~----~~~ 218 (367)
.+ ..++|..... ...+...+. .+..+. +. ......... ...
T Consensus 156 ~~-------------~~~~p~~~~~---~~~~~~~~~--~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (496)
T KOG1192|consen 156 SP-------------LSYVPSPFSL---SSGDDMSFP--ERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPT 217 (496)
T ss_pred Cc-------------ccccCcccCc---cccccCcHH--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCccccccc
Confidence 11 1122221110 000111110 000000 00 000000000 011
Q ss_pred cceEEecc-cccccHHHHHHH-HHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCC--cEEEEecC
Q 041444 219 SYGVAVNS-FYELEPAYADHY-RKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPN--SVVYICFG 294 (367)
Q Consensus 219 ~~~~l~nt-~~~le~~~~~~~-~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~--~vIyvsfG 294 (367)
...++.|+ +..++....... .....+++++|||++...... ....+++|+|..+.. ||||||||
T Consensus 218 ~~~i~~~~~~~~ln~~~~~~~~~~~~~~~v~~IG~l~~~~~~~------------~~~~~~~wl~~~~~~~~~vvyvSfG 285 (496)
T KOG1192|consen 218 ASGIIVNASFIFLNSNPLLDFEPRPLLPKVIPIGPLHVKDSKQ------------KSPLPLEWLDILDESRHSVVYISFG 285 (496)
T ss_pred HHHhhhcCeEEEEccCcccCCCCCCCCCCceEECcEEecCccc------------cccccHHHHHHHhhccCCeEEEECC
Confidence 22345555 666665443333 222358999999998863221 111567787776655 99999999
Q ss_pred CCC---CCCHHHHHHHHHHHHhC-CCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEec-CcccHHHh-hcCCC
Q 041444 295 SLA---NFTSAQLMEIATGLEAS-GRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIR-GWAPQVLI-LDHEA 367 (367)
Q Consensus 295 S~~---~~~~~~~~~~~~al~~~-~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~-~W~PQ~~v-L~Hpa 367 (367)
|++ .++.+++++++.||+++ +++|||+++.+... .+++++.++ ++|.|+. +|+||.++ |.|++
T Consensus 286 S~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~--------~~~~~~~~~--~~~nV~~~~W~PQ~~lll~H~~ 354 (496)
T KOG1192|consen 286 SMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDSI--------YFPEGLPNR--GRGNVVLSKWAPQNDLLLDHPA 354 (496)
T ss_pred cccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcch--------hhhhcCCCC--CcCceEEecCCCcHHHhcCCCc
Confidence 998 89999999999999999 78899999875321 134454444 4554543 89999999 59985
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.91 E-value=2.5e-23 Score=193.98 Aligned_cols=280 Identities=19% Similarity=0.191 Sum_probs=158.1
Q ss_pred EcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccccchhh
Q 041444 13 FPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDAITNEV 92 (367)
Q Consensus 13 ~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (367)
+.+|+.||++|+++||++|++|||+||+++++...+.+.+ .+++++.++.... . ....+........
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~---------~G~~~~~~~~~~~--~-~~~~~~~~~~~~~- 67 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA---------AGAEFVLYGSALP--P-PDNPPENTEEEPI- 67 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH---------cCCEEEecCCcCc--c-ccccccccCcchH-
Confidence 3579999999999999999999999999999855433332 3577776653110 0 1011000000001
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhhhhhhcCCCCCCCC
Q 041444 93 NKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLRLYEPHKKVSSD 172 (367)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (367)
.....+......+...+.+.++..++|+||+|.++.++..+|+++|||+|.+++...... .++
T Consensus 68 --~~~~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~----------- 130 (392)
T TIGR01426 68 --DIIEKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFE----------- 130 (392)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----ccc-----------
Confidence 223333333333444566666778999999999988999999999999998865432110 000
Q ss_pred CCceecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHhhh------------ccceEEecccccccHHHHHHHHH
Q 041444 173 SEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESES------------RSYGVAVNSFYELEPAYADHYRK 240 (367)
Q Consensus 173 ~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~nt~~~le~~~~~~~~~ 240 (367)
. ..+...... ...... . .+....+...+.++..... .....+..+ ++.+++...
T Consensus 131 --~-~~~~~~~~~-~~~~~~--~---~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~-----~~~l~~~~~ 196 (392)
T TIGR01426 131 --E-MVSPAGEGS-AEEGAI--A---ERGLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYT-----PKAFQPAGE 196 (392)
T ss_pred --c-cccccchhh-hhhhcc--c---cchhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeC-----ChHhCCCcc
Confidence 0 000000000 000000 0 0000011111111111000 000011121 222222233
Q ss_pred hcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 041444 241 ALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLEASGRNFIW 320 (367)
Q Consensus 241 ~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~~~~~lW 320 (367)
.+++++.++||+..... +...|++..+++++|||||||+.....+.++++++++.+.+.+++|
T Consensus 197 ~~~~~~~~~Gp~~~~~~-----------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 259 (392)
T TIGR01426 197 TFDDSFTFVGPCIGDRK-----------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVL 259 (392)
T ss_pred ccCCCeEEECCCCCCcc-----------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEE
Confidence 45678999999764321 1123666656788999999998776667889999999999999999
Q ss_pred EEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCC
Q 041444 321 VVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHE 366 (367)
Q Consensus 321 ~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hp 366 (367)
........ .... .+|+|+ .++ +|+||.++|+|.
T Consensus 260 ~~g~~~~~---~~~~-~~~~~v--------~~~-~~~p~~~ll~~~ 292 (392)
T TIGR01426 260 SVGRGVDP---ADLG-ELPPNV--------EVR-QWVPQLEILKKA 292 (392)
T ss_pred EECCCCCh---hHhc-cCCCCe--------EEe-CCCCHHHHHhhC
Confidence 88643211 1111 256664 444 999999999885
No 26
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.90 E-value=9.4e-23 Score=190.90 Aligned_cols=294 Identities=18% Similarity=0.133 Sum_probs=156.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcc-c
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENL-D 86 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 86 (367)
+||+|++.|+.||++|+++||++|++|||+|++++++.....+.. .+++|+.++............... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~---------~G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA---------AGLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH---------cCCceeeCCCCHHHHHhhhhhccccc
Confidence 489999999999999999999999999999999999854322222 357777665211000000000000 0
Q ss_pred ccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhhhhhhcCC
Q 041444 87 AITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLRLYEPH 166 (367)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (367)
.............+......+...+.+.+++.++|+||+|.+..++..+|+++|||+|.+++++......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~---------- 141 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA---------- 141 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc----------
Confidence 0000000011122222333344445555566899999999988889999999999999998765321100
Q ss_pred CCCCCCCCceecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHhhhccceEEe------cccccc--cHHHHHHH
Q 041444 167 KKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESESRSYGVAV------NSFYEL--EPAYADHY 238 (367)
Q Consensus 167 ~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------nt~~~l--e~~~~~~~ 238 (367)
.+............. .. ...+...........++..++-. .....+ -.+.+...
T Consensus 142 --------------~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~ 203 (401)
T cd03784 142 --------------FPPPLGRANLRLYAL---LE-AELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPP 203 (401)
T ss_pred --------------CCCccchHHHHHHHH---HH-HHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCC
Confidence 000000000000000 00 00000111111111111111100 000000 00000000
Q ss_pred HHhcCCceEEeC-cCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCC-HHHHHHHHHHHHhCCC
Q 041444 239 RKALGRRAWHIG-PVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFT-SAQLMEIATGLEASGR 316 (367)
Q Consensus 239 ~~~~~~~v~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~-~~~~~~~~~al~~~~~ 316 (367)
....+.+...+| ++...... ...+.+++.|+++ .+++|||||||+.... .+.++.+++++...+.
T Consensus 204 ~~~~~~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~ 270 (401)
T cd03784 204 PPDWPRFDLVTGYGFRDVPYN-----------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQ 270 (401)
T ss_pred CCCccccCcEeCCCCCCCCCC-----------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCC
Confidence 111223444554 33221111 1246678889986 4679999999998744 4566778999999999
Q ss_pred cEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCC
Q 041444 317 NFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHE 366 (367)
Q Consensus 317 ~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hp 366 (367)
++||..+..... . ..+|+|+ +++ +|+||.++|.|.
T Consensus 271 ~~i~~~g~~~~~----~--~~~~~~v--------~~~-~~~p~~~ll~~~ 305 (401)
T cd03784 271 RAILSLGWGGLG----A--EDLPDNV--------RVV-DFVPHDWLLPRC 305 (401)
T ss_pred eEEEEccCcccc----c--cCCCCce--------EEe-CCCCHHHHhhhh
Confidence 999998754321 1 1367775 455 999999999884
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.69 E-value=2.8e-16 Score=145.50 Aligned_cols=289 Identities=20% Similarity=0.251 Sum_probs=146.7
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCc-c
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCEN-L 85 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 85 (367)
+.||+++..|..||++|+++|+++|.+|||+|+++|+....+.+.+. ++.|..++... ......+. .
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~---~~~~~~~~~~ 68 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRD---SELATEDGKF 68 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccC---Chhhhhhhhh
Confidence 46899999999999999999999999999999999998554444433 35565554210 00000000 0
Q ss_pred cccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhhhhhhc-
Q 041444 86 DAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLRLYE- 164 (367)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~- 164 (367)
... ..+.............+.+++.+..+|+++.|.-.+.+ .++..+++|++......... .+...
T Consensus 69 ~~~------~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~ 135 (406)
T COG1819 69 AGV------KSFRRLLQQFKKLIRELLELLRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTP------LPAAGL 135 (406)
T ss_pred hcc------chhHHHhhhhhhhhHHHHHHHHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccC------Cccccc
Confidence 000 11110111122233444556667789999988766655 78888899988753332211 11000
Q ss_pred CCCCCCCCCCceecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHhhhccceEEec-------ccccccHHHHHH
Q 041444 165 PHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESESRSYGVAVN-------SFYELEPAYADH 237 (367)
Q Consensus 165 ~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n-------t~~~le~~~~~~ 237 (367)
+...+... .....+..+ +........ ......+. ..............+ +-..++..+.+.
T Consensus 136 ~~~~~~~~-~~~~~~~~~----~~~~~~~~~---~~~~~~~~----~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (406)
T COG1819 136 PLPPVGIA-GKLPIPLYP----LPPRLVRPL---IFARSWLP----KLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDV 203 (406)
T ss_pred Cccccccc-ccccccccc----cChhhcccc---ccchhhhh----hhhhhhhccccccccchHHHhcCCCCcccccccc
Confidence 00000000 000011000 011111101 00000000 000000000000000 000111100000
Q ss_pred HH---HhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhC
Q 041444 238 YR---KALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLEAS 314 (367)
Q Consensus 238 ~~---~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~ 314 (367)
.- ..++-....+||++... ..+...|.. .++++|||||||+.+. .+.++.+.+++..+
T Consensus 204 ~~~~~~~~p~~~~~~~~~~~~~----------------~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l 264 (406)
T COG1819 204 LFPPGDRLPFIGPYIGPLLGEA----------------ANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADL 264 (406)
T ss_pred ccCCCCCCCCCcCccccccccc----------------cccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcC
Confidence 00 01122334455554321 223334433 3477999999999977 78888999999999
Q ss_pred CCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCC
Q 041444 315 GRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHE 366 (367)
Q Consensus 315 ~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hp 366 (367)
+.+||-...+ .+ .... .+|.|+ .+. .|+||.++|.|.
T Consensus 265 ~~~vi~~~~~-~~----~~~~-~~p~n~--------~v~-~~~p~~~~l~~a 301 (406)
T COG1819 265 DVRVIVSLGG-AR----DTLV-NVPDNV--------IVA-DYVPQLELLPRA 301 (406)
T ss_pred CcEEEEeccc-cc----cccc-cCCCce--------EEe-cCCCHHHHhhhc
Confidence 9999998865 21 1122 589996 454 999999999885
No 28
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.25 E-value=1.2e-11 Score=97.95 Aligned_cols=121 Identities=16% Similarity=0.174 Sum_probs=73.8
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccccc
Q 041444 10 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDAIT 89 (367)
Q Consensus 10 vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (367)
|+|.+.++.||++|+++|+++|.+|||+|+++++....+.+.+ .+++|+.++. + ..... ...
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~---------~Gl~~~~~~~-----~--~~~~~--~~~ 62 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA---------AGLEFVPIPG-----D--SRLPR--SLE 62 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH---------TT-EEEESSS-----C--GGGGH--HHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc---------cCceEEEecC-----C--cCcCc--ccc
Confidence 6899999999999999999999999999999998855443322 4688888752 1 00000 000
Q ss_pred hhhhHHHHHHHHH---HHHhhHHHHHHHhh--------hCCCCEEEecCCCccHHHHHHHhCCCeEEEecchh
Q 041444 90 NEVNKELIVKFLG---ATTKLQEPLEQLLR--------DHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSF 151 (367)
Q Consensus 90 ~~~~~~~~~~~~~---~~~~~~~~l~~~l~--------~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~ 151 (367)
.. ........ ......+.+.+... ....|+++.+.....+..+|+++|+|++.....+.
T Consensus 63 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 63 PL---ANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HH---HHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred hh---hhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 00 11111111 11112222222211 13578888888888889999999999999765543
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.68 E-value=7.2e-06 Score=75.21 Aligned_cols=117 Identities=15% Similarity=0.061 Sum_probs=72.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccc
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDA 87 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (367)
.+|++.....-||+.|.++++++|.++||+|+++++....+. ..+. ..++.+..++. .++... ..
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~--~l~~-----~~g~~~~~~~~----~~l~~~----~~ 66 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK--TIIE-----KENIPYYSISS----GKLRRY----FD 66 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc--ccCc-----ccCCcEEEEec----cCcCCC----ch
Confidence 368888888899999999999999999999999997654321 1110 12466666652 122110 00
Q ss_pred cchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCc--cHHHHHHHhCCCeEEE
Q 041444 88 ITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFP--WATDAAAKFGIPRLVF 146 (367)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~--~~~~~A~~lgiP~v~~ 146 (367)
. ..+.......... -....++++.+||+||..--.. .+..+|..+++|++..
T Consensus 67 ~------~~~~~~~~~~~~~-~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 67 L------KNIKDPFLVMKGV-MDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred H------HHHHHHHHHHHHH-HHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 0 1111111211111 1233467788999999875443 3567788889999884
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.54 E-value=1.1e-06 Score=79.70 Aligned_cols=122 Identities=22% Similarity=0.380 Sum_probs=69.1
Q ss_pred cEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCccc
Q 041444 8 LHVFFFPFM-AHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLD 86 (367)
Q Consensus 8 ~~vl~~p~p-~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (367)
+||++.... |.||+.-.++|+++| |||+|++++.......+.+ .+.+..++.. .........+
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~~----~~~~~~~~~~ 64 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPGL----GPIQENGRLD 64 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccCc----eEeccCCccc
Confidence 367766544 889999999999999 6999999998743221211 1333333210 0011000111
Q ss_pred ccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecc
Q 041444 87 AITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGT 149 (367)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~ 149 (367)
..... .....+..........+.+.+++.+||+||+|. .+.+..+|+..|+|++.+...
T Consensus 65 ~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~ 123 (318)
T PF13528_consen 65 RWKTV---RNNIRWLARLARRIRREIRWLREFRPDLVISDF-YPLAALAARRAGIPVIVISNQ 123 (318)
T ss_pred hHHHH---HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcC-hHHHHHHHHhcCCCEEEEEeh
Confidence 00000 000111111222233445566778999999995 344567889999999987544
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.19 E-value=1.3e-05 Score=72.74 Aligned_cols=116 Identities=18% Similarity=0.257 Sum_probs=66.3
Q ss_pred EEEE-EcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcc-eeeeeCCCccCCCCCCCCccc
Q 041444 9 HVFF-FPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELD-VKTIKFPSVEAGLPDGCENLD 86 (367)
Q Consensus 9 ~vl~-~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 86 (367)
||++ +...|.||+.+.++|+++|.+ ||+|+++++......++. .++. +...+.... ....+.
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~---------~~~~~~~~~p~~~~--~~~~~~---- 64 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISK---------YGFKVFETFPGIKL--KGEDGK---- 64 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhh---------hcCcceeccCCceE--eecCCc----
Confidence 3454 556677999999999999999 999999987642111111 1122 222210000 001110
Q ss_pred ccchhhhHHHHHHHHH--HH-HhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEec
Q 041444 87 AITNEVNKELIVKFLG--AT-TKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHG 148 (367)
Q Consensus 87 ~~~~~~~~~~~~~~~~--~~-~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~ 148 (367)
. +....+.. .. ........+++++.+||+||+| +...+..+|+.+|||++.+.-
T Consensus 65 -~------~~~~~l~~~~~~~~~~~~~~~~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~ 121 (321)
T TIGR00661 65 -V------NIVKTLRNKEYSPKKAIRREINIIREYNPDLIISD-FEYSTVVAAKLLKIPVICISN 121 (321)
T ss_pred -C------cHHHHHHhhccccHHHHHHHHHHHHhcCCCEEEEC-CchHHHHHHHhcCCCEEEEec
Confidence 0 11111110 01 1112233457778899999999 555667899999999997653
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.83 E-value=0.00034 Score=63.84 Aligned_cols=120 Identities=19% Similarity=0.226 Sum_probs=72.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCC-eEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGV-KASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDA 87 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh-~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (367)
+|++....+-||+.|.++|+++|.+||+ +|.++.+....+..... ...+.++.++.. ++.... .
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~-------~~~~~~~~I~~~----~~~~~~-~--- 66 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK-------QYGIEFELIPSG----GLRRKG-S--- 66 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc-------ccCceEEEEecc----cccccC-c---
Confidence 5778888888999999999999999999 57777554333221111 124666666521 111110 0
Q ss_pred cchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCc--cHHHHHHHhCCCeEEEecch
Q 041444 88 ITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFP--WATDAAAKFGIPRLVFHGTS 150 (367)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~--~~~~~A~~lgiP~v~~~~~~ 150 (367)
. ..+...+... .......+++++.+||+|+.-.-+. .+...|..+|+|.+.--+..
T Consensus 67 ~------~~~~~~~~~~-~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~ 124 (357)
T COG0707 67 L------KLLKAPFKLL-KGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNA 124 (357)
T ss_pred H------HHHHHHHHHH-HHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCC
Confidence 0 1111111111 1123456677889999999854333 45667888899999864443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.62 E-value=0.0012 Score=60.46 Aligned_cols=116 Identities=20% Similarity=0.246 Sum_probs=69.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCccccc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDAI 88 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (367)
+|++......||......|+++|.++||+|++++...... ..... ..++++..++.. ..... ...
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~--~~~~~-----~~~~~~~~~~~~----~~~~~----~~~ 65 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE--ARLVP-----KAGIPLHTIPVG----GLRRK----GSL 65 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch--hhccc-----ccCCceEEEEec----CcCCC----ChH
Confidence 5788888888999999999999999999999998753211 11100 124666666531 11110 000
Q ss_pred chhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCC-c-cHHHHHHHhCCCeEEE
Q 041444 89 TNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFF-P-WATDAAAKFGIPRLVF 146 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~-~-~~~~~A~~lgiP~v~~ 146 (367)
..+..+.... .....+.+++++.+||+|++..-. . .+..+|...++|++..
T Consensus 66 ------~~~~~~~~~~-~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 66 ------KKLKAPFKLL-KGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred ------HHHHHHHHHH-HHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 1111111111 122345566777899999987532 2 3456677889999864
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=97.50 E-value=0.0025 Score=58.45 Aligned_cols=116 Identities=23% Similarity=0.214 Sum_probs=69.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCccccc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDAI 88 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (367)
||+|+.....||+.....|+++|.++||+|++++...... ..... ..+++++.++.. ... .. . .
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~~~-----~~g~~~~~i~~~----~~~-~~-~---~ 65 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRLVP-----KAGIEFYFIPVG----GLR-RK-G---S 65 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hcccc-----cCCCceEEEecc----CcC-CC-C---h
Confidence 7899998889999977899999999999999998643211 01100 124566665421 110 00 0 0
Q ss_pred chhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCc--cHHHHHHHhCCCeEEE
Q 041444 89 TNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFP--WATDAAAKFGIPRLVF 146 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~--~~~~~A~~lgiP~v~~ 146 (367)
. ..+....... .....+.+++++.+||+|++..-.. .+..++...++|++.+
T Consensus 66 --~---~~l~~~~~~~-~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 66 --F---RLIKTPLKLL-KAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred --H---HHHHHHHHHH-HHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 0 1121111111 1223456677888999999875332 2344677789999763
No 35
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=97.47 E-value=0.0033 Score=57.96 Aligned_cols=117 Identities=19% Similarity=0.211 Sum_probs=70.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccc
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDA 87 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (367)
++|+++.....||...+..|+++|.++||+|++++...... ..... ..+++++.++.+ +.... ..
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~--~~~~~-----~~g~~~~~~~~~----~~~~~----~~ 66 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGME--ARLVP-----KAGIEFHFIPSG----GLRRK----GS 66 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchh--hhccc-----cCCCcEEEEecc----CcCCC----Ch
Confidence 57899987777999999999999999999999998754210 11100 124566666421 11100 00
Q ss_pred cchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCC-cc-HHHHHHHhCCCeEEE
Q 041444 88 ITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFF-PW-ATDAAAKFGIPRLVF 146 (367)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~-~~-~~~~A~~lgiP~v~~ 146 (367)
. ..+....... .....+.+++++.+||+|++.... .+ +..++...++|+|..
T Consensus 67 ~------~~l~~~~~~~-~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 67 L------ANLKAPFKLL-KGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred H------HHHHHHHHHH-HHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 0 1111111111 122345567778899999988633 33 345566678999865
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=97.39 E-value=0.0009 Score=62.31 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=67.6
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCccc
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLD 86 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (367)
-++|++......||+.|- +|+++|.++|++|+++..... .+.+... ...+++..++. .++.
T Consensus 5 ~~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~-----~~~~~~~~l~v----~G~~------- 65 (385)
T TIGR00215 5 IPTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGC-----EVLYSMEELSV----MGLR------- 65 (385)
T ss_pred CCeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcC-----ccccChHHhhh----ccHH-------
Confidence 368999999999999999 999999999999999875521 2222200 00122222220 0100
Q ss_pred ccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEE-ecCCCccH--HHHHHHhCCCeEEE
Q 041444 87 AITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLV-ADIFFPWA--TDAAAKFGIPRLVF 146 (367)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi-~D~~~~~~--~~~A~~lgiP~v~~ 146 (367)
+.+..+.... .....+.+++++.+||+|| .|.-.... ...|+.+|+|++.+
T Consensus 66 --------~~l~~~~~~~-~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 66 --------EVLGRLGRLL-KIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred --------HHHHHHHHHH-HHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 1112221211 2233566777888999988 57422232 23788899999987
No 37
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=96.83 E-value=0.0064 Score=53.96 Aligned_cols=105 Identities=18% Similarity=0.239 Sum_probs=65.3
Q ss_pred ccEEEEEc--CCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCC
Q 041444 7 QLHVFFFP--FMAHGHMIPIVDMAKLFATR--GVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGC 82 (367)
Q Consensus 7 ~~~vl~~p--~p~~gH~~p~l~La~~L~~r--Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (367)
..||+|+. ..|-||..=.+.+|+.|++. |.+|+++|.......+.- ..+++++.+|.-. ...++.
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~--------~~gVd~V~LPsl~---k~~~G~ 77 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG--------PAGVDFVKLPSLI---KGDNGE 77 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC--------cccCceEecCceE---ecCCCc
Confidence 45999998 45679999999999999997 999999998865544432 2468888887211 111111
Q ss_pred CcccccchhhhHHHHHHHHHHHHhh-HHHHHHHhhhCCCCEEEecCCCcc
Q 041444 83 ENLDAITNEVNKELIVKFLGATTKL-QEPLEQLLRDHKPDCLVADIFFPW 131 (367)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~D~vi~D~~~~~ 131 (367)
........ + .+....+ ...+.+.+++.+||++|+|.+=..
T Consensus 78 ~~~~d~~~----~-----l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~G 118 (400)
T COG4671 78 YGLVDLDG----D-----LEETKKLRSQLILSTAETFKPDIFIVDKFPFG 118 (400)
T ss_pred eeeeecCC----C-----HHHHHHHHHHHHHHHHHhcCCCEEEEeccccc
Confidence 11000000 1 1111122 233445556689999999976554
No 38
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=96.75 E-value=0.04 Score=51.94 Aligned_cols=121 Identities=12% Similarity=0.038 Sum_probs=66.2
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcc
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENL 85 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (367)
++.+|+++.....|+-.=+..+|++|+++||+||+++....... .... ...++.++.++.. +.....
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~-~~~~-----~~~~v~~~~~~~~------~~~~~~- 68 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPH-DEIL-----SNPNITIHPLPPP------PQRLNK- 68 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCC-HHHh-----cCCCEEEEECCCC------cccccc-
Confidence 45678888887777777778899999999999999986532111 1100 0235666665421 100000
Q ss_pred cccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecC-CC---cc-HHHHHHHhCCCeEEE
Q 041444 86 DAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADI-FF---PW-ATDAAAKFGIPRLVF 146 (367)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~-~~---~~-~~~~A~~lgiP~v~~ 146 (367)
.. ..+..+..........+..+++..++|+|++.. .. .. +..++...++|+|.-
T Consensus 69 --~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~ 127 (415)
T cd03816 69 --LP-----FLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIID 127 (415)
T ss_pred --ch-----HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEE
Confidence 00 112222222222233334455667899999743 22 11 233455568998763
No 39
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=96.70 E-value=0.62 Score=44.65 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=31.1
Q ss_pred CCccEEEEEcCCC-----cccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 5 IPQLHVFFFPFMA-----HGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 5 ~~~~~vl~~p~p~-----~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.++.||+++..+. -|=-+-+..|+++|.++||+|+++++..
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4578999885332 2334567899999999999999999764
No 40
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.59 E-value=0.02 Score=44.64 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=60.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCccccc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDAI 88 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (367)
||+++......| ...+++.|.++||+|++++.....+.... ..++++..++. . ...
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~--------~~~i~~~~~~~-----~----~k~---- 56 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI--------IEGIKVIRLPS-----P----RKS---- 56 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH--------hCCeEEEEecC-----C----CCc----
Confidence 466666655555 56889999999999999998543211111 13566666642 1 000
Q ss_pred chhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCc-cH--HHHHHHhC-CCeEE
Q 041444 89 TNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFP-WA--TDAAAKFG-IPRLV 145 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~-~~--~~~A~~lg-iP~v~ 145 (367)
.. ..+ . +. .+..++++.+||+|.+-.... +. ..++...| +|+|.
T Consensus 57 ~~----~~~----~----~~-~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~ 104 (139)
T PF13477_consen 57 PL----NYI----K----YF-RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIY 104 (139)
T ss_pred cH----HHH----H----HH-HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEE
Confidence 00 111 1 12 567788888999998776554 32 23456667 78875
No 41
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.46 E-value=0.017 Score=53.66 Aligned_cols=112 Identities=15% Similarity=0.205 Sum_probs=63.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccc
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDA 87 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (367)
++|++......||+.|-. ++++|.++++++.++..... .+..... ...++++.++. .++
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~l~~----~g~--------- 60 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGC-----ESLFDMEELAV----MGL--------- 60 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCC-----ccccCHHHhhh----ccH---------
Confidence 479999999999999998 99999999888887764321 1211100 00122222210 000
Q ss_pred cchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEe-cCCCccH--HHHHHHhCCCeEEEe
Q 041444 88 ITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVA-DIFFPWA--TDAAAKFGIPRLVFH 147 (367)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~-D~~~~~~--~~~A~~lgiP~v~~~ 147 (367)
. +.+..+.... .....+.+++++.+||+|+. +.-..+. ...|.+.|+|++.+.
T Consensus 61 ---~---~~~~~~~~~~-~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~ 116 (380)
T PRK00025 61 ---V---EVLPRLPRLL-KIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYV 116 (380)
T ss_pred ---H---HHHHHHHHHH-HHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEe
Confidence 0 1111111111 12345667778889999875 4222233 344677899988763
No 42
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.20 E-value=0.12 Score=48.38 Aligned_cols=112 Identities=19% Similarity=0.254 Sum_probs=61.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCccccc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDAI 88 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (367)
||+|+.-...| ++..||++|+++||+|+++|....... . + +++.+.+.... ...... .
T Consensus 1 ~il~~~~~~p~---~~~~la~~L~~~G~~v~~~~~~~~~~~---~-------~-~v~~~~~~~~~------~~~~~~--~ 58 (396)
T cd03818 1 RILFVHQNFPG---QFRHLAPALAAQGHEVVFLTEPNAAPP---P-------G-GVRVVRYRPPR------GPTSGT--H 58 (396)
T ss_pred CEEEECCCCch---hHHHHHHHHHHCCCEEEEEecCCCCCC---C-------C-CeeEEEecCCC------CCCCCC--C
Confidence 45666433333 367899999999999999997643210 0 1 35555554211 000000 0
Q ss_pred chhhhHHHHHHHHHH---HHhhHHHHHHH-hhhCCCCEEEecCCCccHHHHHHHh-CCCeEEEec
Q 041444 89 TNEVNKELIVKFLGA---TTKLQEPLEQL-LRDHKPDCLVADIFFPWATDAAAKF-GIPRLVFHG 148 (367)
Q Consensus 89 ~~~~~~~~~~~~~~~---~~~~~~~l~~~-l~~~~~D~vi~D~~~~~~~~~A~~l-giP~v~~~~ 148 (367)
.+...+... ...+...+..+ .+..+||+|++.....++..+.+.+ ++|.|.++.
T Consensus 59 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~~ 117 (396)
T cd03818 59 ------PYLREFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGETLFLKDVWPDAPLIGYFE 117 (396)
T ss_pred ------ccchhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchhhhHHHhCCCCCEEEEEe
Confidence 111111111 11223333333 2346899999987666666677775 589888653
No 43
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=96.20 E-value=0.069 Score=48.40 Aligned_cols=104 Identities=23% Similarity=0.326 Sum_probs=64.8
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccccchhhhHHHHH
Q 041444 19 GHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDAITNEVNKELIV 98 (367)
Q Consensus 19 gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (367)
-|+.-+..+.++|.++||+|.+.+-... .....++ ..++++..+.. .+ .+ ...
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~--~~~~LL~-----~yg~~y~~iG~--------~g-~~-----------~~~ 63 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKD--ETEELLD-----LYGIDYIVIGK--------HG-DS-----------LYG 63 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccc--hHHHHHH-----HcCCCeEEEcC--------CC-CC-----------HHH
Confidence 4999999999999999999998775422 2222222 23577777641 11 11 111
Q ss_pred HHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecchh
Q 041444 99 KFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSF 151 (367)
Q Consensus 99 ~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~ 151 (367)
++...... ...+-.++++.+||++|+- ....+..+|.-+|+|.|.|.-+..
T Consensus 64 Kl~~~~~R-~~~l~~~~~~~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~ 114 (335)
T PF04007_consen 64 KLLESIER-QYKLLKLIKKFKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEH 114 (335)
T ss_pred HHHHHHHH-HHHHHHHHHhhCCCEEEec-CcHHHHHHHHHhCCCeEEEecCch
Confidence 22222222 2234456667899999952 223566799999999999977644
No 44
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.04 E-value=0.017 Score=45.76 Aligned_cols=94 Identities=23% Similarity=0.318 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccccchhhhHHHHHHHH
Q 041444 22 IPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDAITNEVNKELIVKFL 101 (367)
Q Consensus 22 ~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (367)
.-+..|+++|+++||+|+++++........ . ...++++..++.+.. .. ..... ..
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~------~~~~~~~~~~~~~~~----~~---~~~~~------~~----- 59 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDE-E------EEDGVRVHRLPLPRR----PW---PLRLL------RF----- 59 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-S-E------EETTEEEEEE--S-S----SS---GGGHC------CH-----
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccc-c------ccCCceEEeccCCcc----ch---hhhhH------HH-----
Confidence 347899999999999999999764332111 0 023466666653211 10 00000 10
Q ss_pred HHHHhhHHHHHHHh--hhCCCCEEEecCCCc-cHHHHHH-HhCCCeEEE
Q 041444 102 GATTKLQEPLEQLL--RDHKPDCLVADIFFP-WATDAAA-KFGIPRLVF 146 (367)
Q Consensus 102 ~~~~~~~~~l~~~l--~~~~~D~vi~D~~~~-~~~~~A~-~lgiP~v~~ 146 (367)
...+..++ +..++|+|.+..... ....+++ ..++|+|.-
T Consensus 60 ------~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~ 102 (160)
T PF13579_consen 60 ------LRRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVT 102 (160)
T ss_dssp ------HHHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE
T ss_pred ------HHHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEE
Confidence 12233444 568999999776433 2334555 789999873
No 45
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=95.69 E-value=0.14 Score=46.36 Aligned_cols=108 Identities=20% Similarity=0.254 Sum_probs=58.2
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccccchhhhHHHH
Q 041444 18 HGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDAITNEVNKELI 97 (367)
Q Consensus 18 ~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (367)
-|+-.-+..|+++|+++||+|+++++.......... ........... ...... . .. ...
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~-------~~~~~~~~~~~----~~~~~~--~---~~-----~~~ 73 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKE-------VIGVVVYGRPI----DEVLRS--A---LP-----RDL 73 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccc-------cccceeecccc----ccccCC--C---ch-----hhh
Confidence 488899999999999999999999976432111100 00111111100 000000 0 00 001
Q ss_pred HHHHHH-HHhhHHHHHHHhhhCCCCEEEecCCCcc---HHHHHHHhCCCeEEE
Q 041444 98 VKFLGA-TTKLQEPLEQLLRDHKPDCLVADIFFPW---ATDAAAKFGIPRLVF 146 (367)
Q Consensus 98 ~~~~~~-~~~~~~~l~~~l~~~~~D~vi~D~~~~~---~~~~A~~lgiP~v~~ 146 (367)
...... .......+..+++..++|+|++...... ....+.+.++|++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~ 126 (359)
T cd03823 74 FHLSDYDNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLT 126 (359)
T ss_pred hHHHhccCHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEE
Confidence 111111 1133456667777789999988765432 234577889998774
No 46
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.68 E-value=0.15 Score=45.20 Aligned_cols=95 Identities=19% Similarity=0.193 Sum_probs=56.7
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccccchhhhHHH
Q 041444 17 AHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDAITNEVNKEL 96 (367)
Q Consensus 17 ~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (367)
|.||+.=.+.||++|.++||+|+|++....... ...+. ..++.+..++.+ ... .
T Consensus 13 G~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~-~~~i~-----~~g~~v~~~~~~-------~~~------------~- 66 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQGAEVAFACKPLPGDL-IDLLL-----SAGFPVYELPDE-------SSR------------Y- 66 (279)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-HHHHH-----HcCCeEEEecCC-------Cch------------h-
Confidence 579999999999999999999999997643321 12221 124555555410 000 0
Q ss_pred HHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccH-H-HHHHHhCCCeEEE
Q 041444 97 IVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWA-T-DAAAKFGIPRLVF 146 (367)
Q Consensus 97 ~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~-~-~~A~~lgiP~v~~ 146 (367)
+ -...+.+++++.++|+||+|...... . ...+..+.+.+++
T Consensus 67 -----~----d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~i 109 (279)
T TIGR03590 67 -----D----DALELINLLEEEKFDILIVDHYGLDADWEKLIKEFGRKILVI 109 (279)
T ss_pred -----h----hHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHhCCeEEEE
Confidence 0 01124556666789999999865432 2 2233345555553
No 47
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=95.57 E-value=0.052 Score=50.49 Aligned_cols=39 Identities=15% Similarity=0.321 Sum_probs=31.3
Q ss_pred CccEEEEEcCCC-cccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMA-HGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~-~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+..||++++... .||..+..+|+++|.++||+|+++...
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~ 42 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDL 42 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEh
Confidence 345788777555 599999999999999999997666543
No 48
>PRK10307 putative glycosyl transferase; Provisional
Probab=95.45 E-value=0.19 Score=47.23 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=26.0
Q ss_pred EEEEEcC---CCcc-cHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPF---MAHG-HMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~---p~~g-H~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
||++++. |-.| =-.-+..|+++|.++||+|+++|+.+
T Consensus 2 kIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 2 KILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred eEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCC
Confidence 6776662 3211 11235799999999999999999764
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=95.44 E-value=0.19 Score=45.98 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=29.9
Q ss_pred EEEEEcCCC----cccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 9 HVFFFPFMA----HGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 9 ~vl~~p~p~----~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
||++++... .|+-.-+..++++|+++||+|++++....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPN 42 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCC
Confidence 355554332 48999999999999999999999987643
No 50
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.97 E-value=0.23 Score=45.68 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=30.0
Q ss_pred EEEEEcCCC-cccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPFMA-HGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p~-~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
||+++.+|. -|.-.-+..+++.|+++||+|++++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 566666543 4788889999999999999999998753
No 51
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.74 E-value=0.16 Score=44.04 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=64.7
Q ss_pred cEEEEEcCC----CcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCC
Q 041444 8 LHVFFFPFM----AHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCE 83 (367)
Q Consensus 8 ~~vl~~p~p----~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (367)
+||+|++-. |.||+.=++.||++|.+||..+++++.....+-+.+.. ..+.+...
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~-------~~f~~~~~-------------- 59 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVY-------EGFKVLEG-------------- 59 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhh-------hhccceee--------------
Confidence 367777755 46999999999999999999999998763221111100 00000000
Q ss_pred cccccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccH---HHHHHHhCCCeEEEecchhh
Q 041444 84 NLDAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWA---TDAAAKFGIPRLVFHGTSFF 152 (367)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~---~~~A~~lgiP~v~~~~~~~~ 152 (367)
+ . . ..+++.++|++|.|.....+ ..+..+.+.+.++|-.-...
T Consensus 60 ------------------~---~-~----n~ik~~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~ 105 (318)
T COG3980 60 ------------------R---G-N----NLIKEEKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAK 105 (318)
T ss_pred ------------------e---c-c----cccccccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCcc
Confidence 0 0 0 16677899999999877643 46788899999998555443
No 52
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=94.71 E-value=0.029 Score=40.78 Aligned_cols=63 Identities=13% Similarity=0.196 Sum_probs=47.9
Q ss_pred HHhhhhcCCCCCcEEEEecCCCCCC---C--HHHHHHHHHHHHhCCCcEEEEEecCCCCCCCCCCcCCCchhH
Q 041444 275 ECLKWLNSKQPNSVVYICFGSLANF---T--SAQLMEIATGLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGF 342 (367)
Q Consensus 275 ~l~~wLd~~~~~~vIyvsfGS~~~~---~--~~~~~~~~~al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~ 342 (367)
.+..||...++++-|.||+||.... . ...+.+++++++.++..+|-.+...... .+. .+|+|+
T Consensus 29 ~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~----~lg-~lP~nV 96 (97)
T PF06722_consen 29 VVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRA----ELG-ELPDNV 96 (97)
T ss_dssp EEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCG----GCC-S-TTTE
T ss_pred CCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHH----hhC-CCCCCC
Confidence 3566988888899999999998743 2 2588999999999999999999765321 333 588883
No 53
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.65 E-value=0.072 Score=48.53 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=25.9
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 18 HGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 18 ~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.|+...+..|+++|+++||+|+++++..
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~ 41 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGP 41 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5899999999999999999999999764
No 54
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=94.65 E-value=0.15 Score=47.27 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=24.8
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 18 HGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 18 ~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
-|+-..+..|+++|+++||+|++++...
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~ 48 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRI 48 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecC
Confidence 4788899999999999999999998653
No 55
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=94.31 E-value=0.88 Score=42.21 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=26.7
Q ss_pred EEEEEcCC-C-cccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 9 HVFFFPFM-A-HGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 9 ~vl~~p~p-~-~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
||+++... + .|=-.-+..||++|+++||+|+++|+.
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~ 39 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSH 39 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 56655432 2 244456789999999999999999975
No 56
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=94.09 E-value=0.44 Score=43.34 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=27.0
Q ss_pred CCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 15 FMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 15 ~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
....|+..-...++++|+++||+|+++++..
T Consensus 11 p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~ 41 (374)
T cd03817 11 PQVNGVATSIRRLAEELEKRGHEVYVVAPSY 41 (374)
T ss_pred CCCCCeehHHHHHHHHHHHcCCeEEEEeCCC
Confidence 3456899999999999999999999998764
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=93.95 E-value=0.46 Score=42.79 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=32.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
+|++++....|+...+..++++|.++||+|++++....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~ 38 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGD 38 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCC
Confidence 46777766778999999999999999999999997754
No 58
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=93.47 E-value=0.74 Score=38.31 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=25.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
|||+.--=|. +---+..|+++|.+.||+|+++.+....
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 2 RILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp EEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSST
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 3444443333 3345788999998888999999988654
No 59
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=93.26 E-value=0.42 Score=44.71 Aligned_cols=101 Identities=18% Similarity=0.171 Sum_probs=54.9
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccccchhhhHHHHH
Q 041444 19 GHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDAITNEVNKELIV 98 (367)
Q Consensus 19 gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (367)
|--.-+..|+++|+++||+|+++++........... ..++.++.++.. ..... .... ...
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~------~~~i~v~~~p~~----~~~~~----~~~~-----~~~- 74 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYL------TNGLKVYYLPFV----VFYNQ----STLP-----TFF- 74 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccc------cCceeEEEecce----eccCC----cccc-----chh-
Confidence 556788999999999999999999753211100110 123455555421 00000 0000 000
Q ss_pred HHHHHHHhhHHHHHHHhhhCCCCEEEecCCC-c---cHHHHHHHhCCCeEEE
Q 041444 99 KFLGATTKLQEPLEQLLRDHKPDCLVADIFF-P---WATDAAAKFGIPRLVF 146 (367)
Q Consensus 99 ~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~-~---~~~~~A~~lgiP~v~~ 146 (367)
. ....+...++..+||+|-+-... . .+..+++.+++|+|..
T Consensus 75 ---~----~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t 119 (398)
T cd03796 75 ---G----TFPLLRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFT 119 (398)
T ss_pred ---h----hHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEE
Confidence 1 11234455556789999866432 2 2345678889998763
No 60
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.16 E-value=1.3 Score=35.81 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=31.2
Q ss_pred hHHHHHHHhhh-CCCCEEEecCCCccHHHHHHHh-CCCeEEEe
Q 041444 107 LQEPLEQLLRD-HKPDCLVADIFFPWATDAAAKF-GIPRLVFH 147 (367)
Q Consensus 107 ~~~~l~~~l~~-~~~D~vi~D~~~~~~~~~A~~l-giP~v~~~ 147 (367)
....+.+|.++ ..||+||.-.-...++-+-..+ ++|.++++
T Consensus 53 v~~a~~~L~~~Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 53 VARAARQLRAQGFVPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred HHHHHHHHHHcCCCCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 34445555443 6789999998888888899999 89999874
No 61
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=92.66 E-value=2.7 Score=42.71 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=22.4
Q ss_pred CCCCEEEecCCCc--cHHHHHHHhCCCeEEE
Q 041444 118 HKPDCLVADIFFP--WATDAAAKFGIPRLVF 146 (367)
Q Consensus 118 ~~~D~vi~D~~~~--~~~~~A~~lgiP~v~~ 146 (367)
.+||+|++-.... .+..+|+++|+|.+..
T Consensus 384 ~~pDlIHahy~d~glva~lla~~lgVP~v~t 414 (784)
T TIGR02470 384 GKPDLIIGNYSDGNLVASLLARKLGVTQCTI 414 (784)
T ss_pred CCCCEEEECCCchHHHHHHHHHhcCCCEEEE
Confidence 4799999876554 2567999999997663
No 62
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=92.46 E-value=0.96 Score=40.74 Aligned_cols=37 Identities=8% Similarity=0.137 Sum_probs=28.9
Q ss_pred EEEEEcCC--------CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPFM--------AHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p--------~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
||++++.. .-|--.-+..|+++|.++||+|++++...
T Consensus 2 kI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~ 46 (335)
T cd03802 2 RIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGD 46 (335)
T ss_pred eEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCC
Confidence 67776543 23556779999999999999999999753
No 63
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=91.79 E-value=1.4 Score=41.79 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=21.6
Q ss_pred ccHHHHHHHHHHHHhCCC--eEEEEeCC
Q 041444 19 GHMIPIVDMAKLFATRGV--KASVITTP 44 (367)
Q Consensus 19 gH~~p~l~La~~L~~rGh--~Vt~~t~~ 44 (367)
|=-.-+..|+++|+++|| +|+++|..
T Consensus 27 G~~~~v~~La~~L~~~G~~~~V~v~t~~ 54 (439)
T TIGR02472 27 GQTKYVLELARALARRSEVEQVDLVTRL 54 (439)
T ss_pred CcchHHHHHHHHHHhCCCCcEEEEEecc
Confidence 444568899999999998 99999953
No 64
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.78 E-value=3.3 Score=36.69 Aligned_cols=107 Identities=18% Similarity=0.244 Sum_probs=66.7
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccccchhhhHHHH
Q 041444 18 HGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDAITNEVNKELI 97 (367)
Q Consensus 18 ~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (367)
.-|+.-+..+.++|.+|||+|.+-+-+.. .+...++ ..++.+..+.. .+... .-
T Consensus 10 ~~hvhfFk~lI~elekkG~ev~iT~rd~~--~v~~LLd-----~ygf~~~~Igk--------~g~~t-----------l~ 63 (346)
T COG1817 10 PPHVHFFKNLIWELEKKGHEVLITCRDFG--VVTELLD-----LYGFPYKSIGK--------HGGVT-----------LK 63 (346)
T ss_pred cchhhHHHHHHHHHHhCCeEEEEEEeecC--cHHHHHH-----HhCCCeEeecc--------cCCcc-----------HH
Confidence 35888899999999999999987553321 1222222 13566666641 11000 01
Q ss_pred HHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecchhh
Q 041444 98 VKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFF 152 (367)
Q Consensus 98 ~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 152 (367)
.++...... .-.+-+++.+.+||+.+. .....+.-+|--+|+|.|.|.-..-.
T Consensus 64 ~Kl~~~~eR-~~~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA 116 (346)
T COG1817 64 EKLLESAER-VYKLSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHA 116 (346)
T ss_pred HHHHHHHHH-HHHHHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCChhH
Confidence 112221111 224566777889999999 66667888999999999999766543
No 65
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=91.57 E-value=1.5 Score=39.85 Aligned_cols=98 Identities=19% Similarity=0.232 Sum_probs=56.1
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccccchhhhHHHH
Q 041444 18 HGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDAITNEVNKELI 97 (367)
Q Consensus 18 ~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (367)
-|--.-...|+++|+++||+|++++..... ..... ..+++++.++.. .. .. . ..+
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~---~~~~~-----~~~~~~~~~~~~-------~~--~~--~------~~~ 64 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGRL---VAELE-----AEGSRHIKLPFI-------SK--NP--L------RIL 64 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCch---HHHHH-----hcCCeEEEcccc-------cc--ch--h------hhH
Confidence 466678899999999999999999865321 11111 123444444310 00 00 0 111
Q ss_pred HHHHHHHHhhHHHHHHHhhhCCCCEEEecCCC-cc-HHHHHHHhCCCeEEEec
Q 041444 98 VKFLGATTKLQEPLEQLLRDHKPDCLVADIFF-PW-ATDAAAKFGIPRLVFHG 148 (367)
Q Consensus 98 ~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~-~~-~~~~A~~lgiP~v~~~~ 148 (367)
.. ...+...++..++|+|++.... .+ +..++..+++|++...-
T Consensus 65 ~~--------~~~l~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h 109 (355)
T cd03819 65 LN--------VARLRRLIREEKVDIVHARSRAPAWSAYLAARRTRPPFVTTVH 109 (355)
T ss_pred HH--------HHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhcCCCEEEEeC
Confidence 11 1224455667899999987533 33 34456777999886443
No 66
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=91.56 E-value=5.7 Score=32.24 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=22.8
Q ss_pred EEEcCCCcccHHHHHHHHHHH-HhCC-CeEEEEeCCC
Q 041444 11 FFFPFMAHGHMIPIVDMAKLF-ATRG-VKASVITTPA 45 (367)
Q Consensus 11 l~~p~p~~gH~~p~l~La~~L-~~rG-h~Vt~~t~~~ 45 (367)
+++...| ||+.=|+.|.+.+ .++. ++..++|...
T Consensus 2 l~v~gsG-GHt~eml~L~~~~~~~~~~~~~~ivt~~d 37 (170)
T PF08660_consen 2 LVVLGSG-GHTAEMLRLLKALDNDRYQPRTYIVTEGD 37 (170)
T ss_pred EEEEcCc-HHHHHHHHHHHHhhhhcCCCcEEEEEcCC
Confidence 4444444 9999999999999 4444 4444555443
No 67
>PLN02275 transferase, transferring glycosyl groups
Probab=90.91 E-value=9.1 Score=35.39 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=29.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCC-eEEEEeCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGV-KASVITTPA 45 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh-~Vt~~t~~~ 45 (367)
.++.++..+-.|.---+..++.+|+++|| +||+++...
T Consensus 5 ~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~ 43 (371)
T PLN02275 5 GRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGG 43 (371)
T ss_pred cEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecC
Confidence 35555555777888888999999999986 799998643
No 68
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=90.83 E-value=1.1 Score=34.97 Aligned_cols=49 Identities=8% Similarity=0.026 Sum_probs=41.2
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhh
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKS 53 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~ 53 (367)
+++.+|++.+.++-+|-.-..-++..|.++|++|+++-..-..+.+...
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~ 49 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDA 49 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 4678999999999999999999999999999999998876554444433
No 69
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=90.65 E-value=2.4 Score=38.08 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=26.2
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 18 HGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 18 ~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.|+..-+..++++|.+.||+|++++....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~ 42 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDG 42 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCC
Confidence 68999999999999999999999998643
No 70
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=90.22 E-value=1.9 Score=39.24 Aligned_cols=37 Identities=8% Similarity=0.067 Sum_probs=29.3
Q ss_pred EEEEcC--CCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 10 VFFFPF--MAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 10 vl~~p~--p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
|+++.. ..-|.-.-+..++++|.++||+|++++....
T Consensus 2 Il~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~ 40 (358)
T cd03812 2 ILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKE 40 (358)
T ss_pred EEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCC
Confidence 444433 3458889999999999999999999997643
No 71
>PLN00142 sucrose synthase
Probab=89.89 E-value=2.7 Score=42.85 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=23.4
Q ss_pred CCCCEEEecCCCc-c-HHHHHHHhCCCeEEE
Q 041444 118 HKPDCLVADIFFP-W-ATDAAAKFGIPRLVF 146 (367)
Q Consensus 118 ~~~D~vi~D~~~~-~-~~~~A~~lgiP~v~~ 146 (367)
.+||+|.+-...+ . +..+|+++|+|.+..
T Consensus 407 ~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T 437 (815)
T PLN00142 407 GKPDLIIGNYSDGNLVASLLAHKLGVTQCTI 437 (815)
T ss_pred CCCCEEEECCccHHHHHHHHHHHhCCCEEEE
Confidence 4799999887665 3 568999999999874
No 72
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=89.77 E-value=4 Score=42.75 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHHHHhCC--CeEEEEeCC
Q 041444 19 GHMIPIVDMAKLFATRG--VKASVITTP 44 (367)
Q Consensus 19 gH~~p~l~La~~L~~rG--h~Vt~~t~~ 44 (367)
|+..-.++||++|+++| |+|+++|-.
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~ 223 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQ 223 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 67888999999999998 899999954
No 73
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=89.14 E-value=2.9 Score=38.05 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=23.6
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 18 HGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 18 ~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.|=-.-...|+++|.++||+|++++...
T Consensus 15 gG~~~~~~~la~~L~~~g~~v~v~~~~~ 42 (363)
T cd04955 15 GGFETFVEELAPRLVARGHEVTVYCRSP 42 (363)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 3555678899999999999999999764
No 74
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=88.84 E-value=2.4 Score=37.86 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=24.7
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 18 HGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 18 ~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.|...-+..++++|+++||+|++++....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (348)
T cd03820 13 GGAERVLSNLANALAEKGHEVTIISLDKG 41 (348)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 46667788999999999999999997643
No 75
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=88.81 E-value=1.6 Score=39.11 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=29.8
Q ss_pred EEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPFM--AHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p--~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
||+++... ..|+-..+..++++|.++||+|++++...
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~ 39 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRD 39 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCC
Confidence 35554433 56888999999999999999999999764
No 76
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=88.53 E-value=7.9 Score=29.08 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=33.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
||++.+.++..|.....-++..|.++|++|.++-...
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~ 37 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDV 37 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCC
Confidence 5889999999999999999999999999998876543
No 77
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=88.43 E-value=6 Score=36.91 Aligned_cols=28 Identities=25% Similarity=0.441 Sum_probs=24.7
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 18 HGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 18 ~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
-|--.-...|+++|+++||+|+++|+..
T Consensus 20 GG~e~~v~~la~~L~~~G~~V~v~~~~~ 47 (405)
T TIGR03449 20 GGMNVYILETATELARRGIEVDIFTRAT 47 (405)
T ss_pred CCceehHHHHHHHHhhCCCEEEEEeccc
Confidence 4777889999999999999999999753
No 78
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=87.83 E-value=3.1 Score=36.73 Aligned_cols=40 Identities=13% Similarity=0.153 Sum_probs=35.3
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
...|.+--.||.|--.-+-.|.++|.+|||+|-++..++.
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS 90 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPS 90 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCC
Confidence 3467799999999999999999999999999999987653
No 79
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=87.13 E-value=11 Score=33.98 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=26.2
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 17 AHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 17 ~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.-|.-.-+..++++|.++||+|++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPE 42 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 458889999999999999999999997643
No 80
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=86.66 E-value=5.8 Score=34.23 Aligned_cols=99 Identities=23% Similarity=0.375 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccccchhhhHHHHHHHHH
Q 041444 23 PIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDAITNEVNKELIVKFLG 102 (367)
Q Consensus 23 p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (367)
=+..|++.|. .+++||++.+..........+. ....++...+. ...-...+.+
T Consensus 15 Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slT----l~~Plr~~~~~---------~~~~av~GTP------------- 67 (252)
T COG0496 15 GIRALARALR-EGADVTVVAPDREQSGASHSLT----LHEPLRVRQVD---------NGAYAVNGTP------------- 67 (252)
T ss_pred HHHHHHHHHh-hCCCEEEEccCCCCcccccccc----cccCceeeEec---------cceEEecCCh-------------
Confidence 3677888888 9999999999865432221110 01112222221 0000000111
Q ss_pred HHHhhHHHHHHHhhhCCCCEEEecC----------CCcc---HHHHHHHhCCCeEEEecc
Q 041444 103 ATTKLQEPLEQLLRDHKPDCLVADI----------FFPW---ATDAAAKFGIPRLVFHGT 149 (367)
Q Consensus 103 ~~~~~~~~l~~~l~~~~~D~vi~D~----------~~~~---~~~~A~~lgiP~v~~~~~ 149 (367)
.+...-.+..++++..||+||+-. +.+. +..-|..+|+|.|.+|-.
T Consensus 68 -aDCV~lal~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 68 -ADCVILGLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred -HHHHHHHHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 122344677777777799999854 3332 233466789999888655
No 81
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=86.44 E-value=3.3 Score=39.07 Aligned_cols=30 Identities=10% Similarity=0.174 Sum_probs=25.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCe
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVK 37 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~ 37 (367)
.+++-+-..+.|.+.-...|+++|.+++++
T Consensus 50 ~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~ 79 (425)
T PRK05749 50 GPLIWFHAVSVGETRAAIPLIRALRKRYPD 79 (425)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHHHhCCC
Confidence 356677778889999999999999998765
No 82
>PLN02846 digalactosyldiacylglycerol synthase
Probab=83.93 E-value=1.6 Score=41.53 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=32.9
Q ss_pred CCccEEEEEcCCCc----ccHHHHHHHHHHHHhCC-CeEEEEeCCC
Q 041444 5 IPQLHVFFFPFMAH----GHMIPIVDMAKLFATRG-VKASVITTPA 45 (367)
Q Consensus 5 ~~~~~vl~~p~p~~----gH~~p~l~La~~L~~rG-h~Vt~~t~~~ 45 (367)
.+++||+|++-... |=....+.++..|++|| |+|+++.+..
T Consensus 2 ~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 2 QKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 35789999985543 66577788888999999 8999998853
No 83
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=83.68 E-value=9.8 Score=35.02 Aligned_cols=111 Identities=18% Similarity=0.188 Sum_probs=60.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDA 87 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~r-Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (367)
||++ -.....|+.=+.++.++|.++ +.++.++.+............ .-++.. .++. .+.. . .
T Consensus 2 ~i~~-~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~-----~~~i~~-~~~~-----~~~~--~---~ 64 (365)
T TIGR00236 2 KVSI-VLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLD-----LFHLPP-DYDL-----NIMS--P---G 64 (365)
T ss_pred eEEE-EEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHH-----hcCCCC-Ceee-----ecCC--C---C
Confidence 4554 456678999999999999987 567666666543321111110 011110 0100 0100 0 0
Q ss_pred cchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEec--CCCc-cHHHHHHHhCCCeEEE
Q 041444 88 ITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVAD--IFFP-WATDAAAKFGIPRLVF 146 (367)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D--~~~~-~~~~~A~~lgiP~v~~ 146 (367)
. ... .....+...+.+++++.+||+|++- .... ++..+|.++|+|++.+
T Consensus 65 ~------~~~----~~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 65 Q------TLG----EITSNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred C------CHH----HHHHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 0 011 1111223456677888899999864 4433 4667889999999865
No 84
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=83.43 E-value=9.8 Score=35.52 Aligned_cols=35 Identities=9% Similarity=0.162 Sum_probs=26.6
Q ss_pred ccEEEEEc-CCCcccHHHHHHHHHHHHhCCC---eEEEE
Q 041444 7 QLHVFFFP-FMAHGHMIPIVDMAKLFATRGV---KASVI 41 (367)
Q Consensus 7 ~~~vl~~p-~p~~gH~~p~l~La~~L~~rGh---~Vt~~ 41 (367)
..||++++ .-|.||.....+|.++|.++|. +|.++
T Consensus 5 ~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~ 43 (391)
T PRK13608 5 NKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEH 43 (391)
T ss_pred CceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 35777766 4467999999999999999874 45543
No 85
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=83.40 E-value=1.3 Score=35.48 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=23.1
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 18 HGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 18 ~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.|=-.-+..|+++|+++||+||++++..
T Consensus 12 GG~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 12 GGAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred ChHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 4677889999999999999999998763
No 86
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=83.08 E-value=14 Score=30.76 Aligned_cols=48 Identities=10% Similarity=-0.074 Sum_probs=40.4
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhh
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKS 53 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~ 53 (367)
.+.+|++.+.++--|-....-++.-|..+|++|+++...-..+.+...
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~ 130 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEK 130 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHH
Confidence 457999999999999999999999999999999998876554444444
No 87
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=82.96 E-value=2.2 Score=32.24 Aligned_cols=37 Identities=8% Similarity=-0.090 Sum_probs=26.3
Q ss_pred EEEEEcCCCcc---cHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPFMAHG---HMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p~~g---H~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
||+|+--|-.+ .-....+|+.+..+|||+|.+++...
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 67777776644 34568899999999999999998764
No 88
>PRK12342 hypothetical protein; Provisional
Probab=82.76 E-value=21 Score=31.07 Aligned_cols=36 Identities=8% Similarity=-0.152 Sum_probs=26.2
Q ss_pred HhhhCCCCEEEecCCCcc------HHHHHHHhCCCeEEEecc
Q 041444 114 LLRDHKPDCLVADIFFPW------ATDAAAKFGIPRLVFHGT 149 (367)
Q Consensus 114 ~l~~~~~D~vi~D~~~~~------~~~~A~~lgiP~v~~~~~ 149 (367)
.++...||+|++-..... +..+|+.||+|++.+...
T Consensus 104 ~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 104 AIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 333346999998754432 578999999999987654
No 89
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=82.53 E-value=17 Score=32.61 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=26.7
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 17 AHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 17 ~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
..|+-.-+..+++.|.+.||+|++++....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~ 42 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPW 42 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCC
Confidence 468899999999999999999999998643
No 90
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=82.50 E-value=22 Score=29.72 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=38.3
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhh
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSK 52 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~ 52 (367)
.+.+|++.+.++-.|-....-++..|.++|++|+++...-..+.+..
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~ 127 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVE 127 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 36799999999999999999999999999999988765543333333
No 91
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=80.26 E-value=7 Score=36.14 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=60.9
Q ss_pred EcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCCCcc-hhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccccch
Q 041444 13 FPFMAHGHMIPIVDMAKLFATR-GVKASVITTPANAP-YVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDAITN 90 (367)
Q Consensus 13 ~p~p~~gH~~p~l~La~~L~~r-Gh~Vt~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (367)
+..+.+..+.=+.++.++|.+. +.++.++.+..... .+-....... ..++... + ...-........
T Consensus 5 ~v~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~--~~~~~~~--~------~~~~~~~~~~~~-- 72 (365)
T TIGR03568 5 VVTGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIE--KDGFDID--E------KIEILLDSDSNA-- 72 (365)
T ss_pred EEEecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHH--HcCCCCC--C------ccccccCCCCCC--
Confidence 3456677788888999999874 78887777654332 1100110000 0011110 0 000000000000
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEe--cCCCc-cHHHHHHHhCCCeEEEec
Q 041444 91 EVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVA--DIFFP-WATDAAAKFGIPRLVFHG 148 (367)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~--D~~~~-~~~~~A~~lgiP~v~~~~ 148 (367)
........+...+.+++++.+||+||+ |.+.. ++..+|.++|||++.+--
T Consensus 73 --------~~~~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~Hvea 125 (365)
T TIGR03568 73 --------GMAKSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHG 125 (365)
T ss_pred --------CHHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEEC
Confidence 011222233456777888889999884 44444 467789999999996543
No 92
>PRK00654 glgA glycogen synthase; Provisional
Probab=80.02 E-value=2.7 Score=40.26 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=28.5
Q ss_pred EEEEEcCC------CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPFM------AHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p------~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
||+++++- .-|.-.-+-.|+++|+++||+|+++++..
T Consensus 2 ~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y 44 (466)
T PRK00654 2 KILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGY 44 (466)
T ss_pred eEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 56665533 23666778999999999999999999753
No 93
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=79.89 E-value=12 Score=34.15 Aligned_cols=33 Identities=9% Similarity=0.145 Sum_probs=25.5
Q ss_pred EcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCC
Q 041444 13 FPFMAHGHMIPIVDMAKLFATR-GVKASVITTPA 45 (367)
Q Consensus 13 ~p~p~~gH~~p~l~La~~L~~r-Gh~Vt~~t~~~ 45 (367)
+..+....+.=+.+|.++|.++ |+++.++.+..
T Consensus 4 ~~~gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg~ 37 (363)
T cd03786 4 VVTGTRPEYIKLAPLIRALKKDPGFELVLVVTGQ 37 (363)
T ss_pred EEEecCHHHHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 3345667778888899999987 99999776653
No 94
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=79.23 E-value=2.2 Score=38.74 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=28.0
Q ss_pred EEEEcC--CCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 10 VFFFPF--MAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 10 vl~~p~--p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
|+++.. ...|+...+..|+++|.++||+|++++..
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~ 38 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLT 38 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEe
Confidence 454433 23588999999999999999999999854
No 95
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=79.14 E-value=13 Score=34.74 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=23.6
Q ss_pred CCCcccHHHHHHHHHHHHh--CCCeEE---EEeCCC
Q 041444 15 FMAHGHMIPIVDMAKLFAT--RGVKAS---VITTPA 45 (367)
Q Consensus 15 ~p~~gH~~p~l~La~~L~~--rGh~Vt---~~t~~~ 45 (367)
+-|+|-=.--++++++|.+ +|++|. ++.+..
T Consensus 4 snghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~ 39 (396)
T TIGR03492 4 SNGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGR 39 (396)
T ss_pred CCCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCH
Confidence 3455555678899999998 699999 877653
No 96
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=78.86 E-value=3 Score=37.97 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=30.6
Q ss_pred EEEEEcCC-C-cccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPFM-A-HGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p-~-~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
||+++... + .|+-.-...++++|.++||+|++++...
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~ 40 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEK 40 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeec
Confidence 67766543 3 5889999999999999999999998764
No 97
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=78.84 E-value=18 Score=33.23 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=27.3
Q ss_pred EEEEc--CCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 10 VFFFP--FMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 10 vl~~p--~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
|+++. +.+-|=-.-+..+++.|.+.||+|+++++..
T Consensus 2 i~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~ 39 (372)
T cd03792 2 VLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKG 39 (372)
T ss_pred eEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCC
Confidence 44443 2344667778899999999999999998753
No 98
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=78.71 E-value=34 Score=29.84 Aligned_cols=36 Identities=8% Similarity=-0.096 Sum_probs=26.2
Q ss_pred HhhhCCCCEEEecCCCc------cHHHHHHHhCCCeEEEecc
Q 041444 114 LLRDHKPDCLVADIFFP------WATDAAAKFGIPRLVFHGT 149 (367)
Q Consensus 114 ~l~~~~~D~vi~D~~~~------~~~~~A~~lgiP~v~~~~~ 149 (367)
.++...||+|++-.... -+..+|+.||+|++.+...
T Consensus 107 ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 107 AAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 33344699999865443 2467999999999997654
No 99
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=78.67 E-value=4.6 Score=32.19 Aligned_cols=35 Identities=26% Similarity=0.184 Sum_probs=29.0
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEE
Q 041444 288 VVYICFGSLANFTSAQLMEIATGLEASGRNFIWVV 322 (367)
Q Consensus 288 vIyvsfGS~~~~~~~~~~~~~~al~~~~~~~lW~~ 322 (367)
.+|+|+||...-+.++++....+|.+.+.--+++.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 58999999998888889999999998886445554
No 100
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=78.60 E-value=22 Score=33.59 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=23.2
Q ss_pred ccHHHHHHHHHHHHhC--CCeEEEEeCCCCc
Q 041444 19 GHMIPIVDMAKLFATR--GVKASVITTPANA 47 (367)
Q Consensus 19 gH~~p~l~La~~L~~r--Gh~Vt~~t~~~~~ 47 (367)
|==..+...+.+|.++ ||+|+++|+....
T Consensus 15 g~ervl~~a~~~l~~~~~~~~v~i~t~~~~~ 45 (419)
T cd03806 15 GGERVLWCAVRALQKRYPNNIVVIYTGDLDA 45 (419)
T ss_pred CchHHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 4456778889999988 8999999987543
No 101
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=78.15 E-value=25 Score=30.73 Aligned_cols=38 Identities=21% Similarity=0.468 Sum_probs=24.8
Q ss_pred HHHHhhhCCCCEEEec----------CCCcc---HHHHHHHhCCCeEEEec
Q 041444 111 LEQLLRDHKPDCLVAD----------IFFPW---ATDAAAKFGIPRLVFHG 148 (367)
Q Consensus 111 l~~~l~~~~~D~vi~D----------~~~~~---~~~~A~~lgiP~v~~~~ 148 (367)
+..++...+||+||+- .+++. +..-|..+|||.|.+|-
T Consensus 79 l~~~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 79 LYDVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HHHhcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 3444433579999974 44443 23446678999999885
No 102
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=77.63 E-value=29 Score=30.23 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=27.5
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
++||++.--=|. |---+..|+++|.+.| +|+++.+....
T Consensus 5 ~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~ 43 (257)
T PRK13932 5 KPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPH 43 (257)
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCC
Confidence 467777664442 1234788999998888 79999887654
No 103
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=77.56 E-value=27 Score=30.54 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 22 IPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 22 ~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
--+..|+++|.+.| +|+++.+....
T Consensus 14 pGi~aL~~al~~~g-~V~VvAP~~eq 38 (266)
T PRK13934 14 PGLRLLYEFVSPLG-EVDVVAPETPK 38 (266)
T ss_pred HHHHHHHHHHHhCC-cEEEEccCCCC
Confidence 44788999998888 89999887654
No 104
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=76.92 E-value=30 Score=29.90 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 23 PIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 23 p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
-+..|+++|.+.| +|+++.+....
T Consensus 15 Gi~aL~~~l~~~g-~V~VvAP~~~~ 38 (244)
T TIGR00087 15 GIRALYQALKELG-EVTVVAPARQR 38 (244)
T ss_pred hHHHHHHHHHhCC-CEEEEeCCCCc
Confidence 3788999999988 89999987654
No 105
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=76.13 E-value=3.9 Score=36.98 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=26.5
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 17 AHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 17 ~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
..|+......|+++|+++||+|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAG 42 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCC
Confidence 459999999999999999999999997643
No 106
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=76.10 E-value=40 Score=30.86 Aligned_cols=104 Identities=15% Similarity=0.188 Sum_probs=57.6
Q ss_pred cEEE-EEcCCC-cccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcc
Q 041444 8 LHVF-FFPFMA-HGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENL 85 (367)
Q Consensus 8 ~~vl-~~p~p~-~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (367)
++|+ +++... .|--.-+..|+++|.++||++++++..... .+..... ..+++++.++. ... .
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~-~~~~~~~-----~~~i~~~~~~~-------~~~-~-- 65 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVS-AFRKRIQ-----RPDVAFYALHK-------QPG-K-- 65 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCC-hhHHHHH-----hcCceEEEeCC-------CCC-C--
Confidence 4555 444444 456688999999999999999888743221 2222211 13466665531 000 0
Q ss_pred cccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCc-cHHHHHHHhCCCeEE
Q 041444 86 DAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFP-WATDAAAKFGIPRLV 145 (367)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~-~~~~~A~~lgiP~v~ 145 (367)
.. .. ...+..+++..+||+|-+-.... .+..++...++|..+
T Consensus 66 ----~~---~~-----------~~~l~~~l~~~~~Divh~~~~~~~~~~~~~~~~~~~~~i 108 (374)
T TIGR03088 66 ----DV---AV-----------YPQLYRLLRQLRPDIVHTRNLAALEAQLPAALAGVPARI 108 (374)
T ss_pred ----Ch---HH-----------HHHHHHHHHHhCCCEEEEcchhHHHHHHHHHhcCCCeEE
Confidence 00 11 11244556667899988654332 234556677888643
No 107
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=75.41 E-value=2.5 Score=39.52 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=25.9
Q ss_pred EcCCC-cccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 13 FPFMA-HGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 13 ~p~p~-~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+|+|- .|.-.=+..++++|+++ |+||++|...
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 45554 48888899999999776 9999999764
No 108
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=75.39 E-value=36 Score=30.41 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=26.2
Q ss_pred CCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 16 MAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 16 p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
..-|+-..+..|+++|.++||+|.+++...
T Consensus 10 ~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~ 39 (365)
T cd03807 10 DVGGAERMLVRLLKGLDRDRFEHVVISLTD 39 (365)
T ss_pred cCccHHHHHHHHHHHhhhccceEEEEecCc
Confidence 346899999999999999999999988653
No 109
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=75.13 E-value=6.4 Score=29.55 Aligned_cols=36 Identities=11% Similarity=0.190 Sum_probs=33.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
|+++...+..-|-.-+..++..|.++||+|.++-..
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 789999999999999999999999999999988554
No 110
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=74.90 E-value=9.6 Score=34.34 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=34.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANA 47 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~r--Gh~Vt~~t~~~~~ 47 (367)
||+++-....|.+.-..++.++|.++ +.+||+++.....
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~ 41 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFA 41 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHh
Confidence 58889999999999999999999997 9999999987543
No 111
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=74.79 E-value=37 Score=29.50 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 24 IVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
+.+|+++|.+ +|+|+++.+....
T Consensus 16 i~aL~~~l~~-~~~V~VvAP~~~q 38 (253)
T PRK13935 16 IIILAEYLSE-KHEVFVVAPDKER 38 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCC
Confidence 7788888865 6899999987654
No 112
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=73.60 E-value=6.7 Score=32.10 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=23.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
||+++.-.|. + --.|.++..+|||+||-++-.
T Consensus 2 KIaiIgAsG~--~--Gs~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 2 KIAIIGASGK--A--GSRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred eEEEEecCch--h--HHHHHHHHHhCCCeeEEEEeC
Confidence 5666665443 2 246889999999999988743
No 113
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=73.46 E-value=21 Score=34.47 Aligned_cols=47 Identities=4% Similarity=0.029 Sum_probs=39.3
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhh
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKS 53 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~ 53 (367)
..-+++...||.|=..-.++++.+.+++|..|.+++.+...+.+...
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 34577888999999999999999999999999999998765554443
No 114
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=73.22 E-value=5.6 Score=38.20 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=28.4
Q ss_pred EEEEEcCC------CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPFM------AHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p------~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
||+++++- .-|=-..+-.|+++|+++||+|+++++..
T Consensus 2 ~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 2 RVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred eEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 56666643 22555677899999999999999999754
No 115
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=72.82 E-value=49 Score=28.80 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 24 IVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
+..|+++|.+ +|+|+++.+....
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~~ 38 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQR 38 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCC
Confidence 7888898865 6899999987654
No 116
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=72.44 E-value=4.7 Score=35.14 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=37.0
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcc
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAP 48 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~ 48 (367)
+...++++..||.|=..-..+++.+|.++|+.|+|++......
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~ 146 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS 146 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 3457999999999999999999999999999999999875443
No 117
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=72.22 E-value=1.1e+02 Score=30.45 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=28.3
Q ss_pred HHHHHHHhhhCCCCEEE-ecC--CCccHHHHHHHhCC--CeEEEecch
Q 041444 108 QEPLEQLLRDHKPDCLV-ADI--FFPWATDAAAKFGI--PRLVFHGTS 150 (367)
Q Consensus 108 ~~~l~~~l~~~~~D~vi-~D~--~~~~~~~~A~~lgi--P~v~~~~~~ 150 (367)
...+.+.+++.+||++| .|. |..-....+++.|+ |++.+.+-.
T Consensus 299 ~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPq 346 (608)
T PRK01021 299 YRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPS 346 (608)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcc
Confidence 34444555568999987 686 33445567888896 988765443
No 118
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=71.95 E-value=27 Score=29.66 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=31.7
Q ss_pred cEEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 8 LHVFFFPFM--AHGHMIPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 8 ~~vl~~p~p--~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
.+|.+++++ |-|-......|+.+||++|+.|.++-.+-..
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGL 43 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGL 43 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCc
Confidence 355566553 6789999999999999999999998776433
No 119
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=71.67 E-value=7.9 Score=37.37 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=37.8
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEecC
Q 041444 284 QPNSVVYICFGSLANFTSAQLMEIATGLEASGRNFIWVVRKN 325 (367)
Q Consensus 284 ~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~~~~~lW~~~~~ 325 (367)
|++.|||+||+....+.++.+..=+.=|+..+..++|-...+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~ 468 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG 468 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 568899999999999999999888888999999999998764
No 120
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=71.59 E-value=8.2 Score=29.58 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=28.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
||++...++.+=+. ...+.++|.++|++|+++.++.
T Consensus 2 ~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~ 37 (129)
T PF02441_consen 2 RILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPS 37 (129)
T ss_dssp EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHH
T ss_pred EEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCc
Confidence 67777777655455 9999999999999999988873
No 121
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=71.18 E-value=5.9 Score=38.00 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 19 GHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 19 gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
|=-..+-.|+++|+++||+|+++++..
T Consensus 17 Gl~~~~~~L~~aL~~~G~~V~Vi~p~y 43 (476)
T cd03791 17 GLGDVVGALPKALAKLGHDVRVIMPKY 43 (476)
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 444567889999999999999999753
No 122
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=70.70 E-value=72 Score=27.82 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=34.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.-+++.-.||.|=..-.++++.+.+++|..|.|++.+..
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESP 75 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 346778889999999999999999999999999998743
No 123
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=70.63 E-value=26 Score=28.48 Aligned_cols=42 Identities=10% Similarity=-0.033 Sum_probs=35.6
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhh
Q 041444 10 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVS 51 (367)
Q Consensus 10 vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~ 51 (367)
+++...||.|=..-.+.++.+.+++|..|.+++.+...+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~ 43 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELI 43 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHH
Confidence 567888999999999999999999999999999886554443
No 124
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=70.23 E-value=42 Score=29.13 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 23 PIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 23 p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
-+..|+++|.+. |+|+++.+....
T Consensus 15 Gi~aL~~~l~~~-~~V~VvAP~~~q 38 (250)
T PRK00346 15 GIRALAEALREL-ADVTVVAPDRER 38 (250)
T ss_pred hHHHHHHHHHhC-CCEEEEeCCCCC
Confidence 378899999988 799999987654
No 125
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=69.78 E-value=50 Score=30.07 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=34.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANA 47 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~r--Gh~Vt~~t~~~~~ 47 (367)
||+++-..+.|.+.-..++.+.|.++ +.+|++++.....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~ 41 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETI 41 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChH
Confidence 58899999999999999999999996 8899999987543
No 126
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=69.02 E-value=39 Score=30.91 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=27.0
Q ss_pred EEEEEcC--CC-cccHHHHHHHHHHHHhC--CCeEEEEeCCC
Q 041444 9 HVFFFPF--MA-HGHMIPIVDMAKLFATR--GVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~--p~-~gH~~p~l~La~~L~~r--Gh~Vt~~t~~~ 45 (367)
||+++.. +. -|=-.-+..++++|.++ ||+|++++...
T Consensus 2 kI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~ 43 (359)
T PRK09922 2 KIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRND 43 (359)
T ss_pred eeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCC
Confidence 5666653 22 24447789999999999 89999888653
No 127
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=68.80 E-value=19 Score=30.40 Aligned_cols=48 Identities=6% Similarity=0.017 Sum_probs=40.1
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhh
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKS 53 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~ 53 (367)
.+.+|++.+.++-.|-.-..-++..|..+|++|+++-..-..+.+...
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~ 134 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEA 134 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHH
Confidence 467999999999999999999999999999999998866544444433
No 128
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=68.67 E-value=53 Score=30.47 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=23.7
Q ss_pred EEEcCCCcccHHHHHHHHHHHHhC-CC--eEEEE
Q 041444 11 FFFPFMAHGHMIPIVDMAKLFATR-GV--KASVI 41 (367)
Q Consensus 11 l~~p~p~~gH~~p~l~La~~L~~r-Gh--~Vt~~ 41 (367)
.+...-|.||.....+|.++|.++ |. +|+++
T Consensus 3 ils~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~ 36 (382)
T PLN02605 3 ILMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIV 36 (382)
T ss_pred EEEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 345567889999999999999875 54 55554
No 129
>PRK08760 replicative DNA helicase; Provisional
Probab=68.63 E-value=75 Score=30.63 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=33.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCCCcc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTPANAP 48 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~r-Gh~Vt~~t~~~~~~ 48 (367)
=+++..-|+.|=..-.+.+|...+.+ |+.|.|++.+-...
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ 271 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSAS 271 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHH
Confidence 35677889999999999999998854 99999998875443
No 130
>PRK05595 replicative DNA helicase; Provisional
Probab=68.49 E-value=85 Score=29.94 Aligned_cols=40 Identities=10% Similarity=0.153 Sum_probs=32.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCCCCcc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFA-TRGVKASVITTPANAP 48 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~-~rGh~Vt~~t~~~~~~ 48 (367)
=+++..-|+.|=..-.+.++..++ +.|+.|.+++.+-..+
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~ 243 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKE 243 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHH
Confidence 355677899999999999999887 5699999999875443
No 131
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=67.47 E-value=78 Score=26.98 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=33.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCCCcc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTPANAP 48 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~r-Gh~Vt~~t~~~~~~ 48 (367)
-+++...|+.|=..-.++++..++.+ |+.|.+++.+....
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~ 55 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKE 55 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHH
Confidence 35567788889999999999999887 99999999886543
No 132
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=66.81 E-value=8.6 Score=31.88 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=24.5
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 17 AHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 17 ~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
..|+-.....|++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 56999999999999999999999988
No 133
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=66.67 E-value=17 Score=30.57 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=31.7
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 10 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 10 vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
+++.---+.|--.-...++..+...||.|++++++...
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~ 68 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTV 68 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhH
Confidence 44555667788888999999999999999999998654
No 134
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=66.14 E-value=51 Score=29.89 Aligned_cols=37 Identities=38% Similarity=0.633 Sum_probs=25.2
Q ss_pred HHHHHhhhCCCCEEEecCCCc--cHHHHHHHhCCCeEEE
Q 041444 110 PLEQLLRDHKPDCLVADIFFP--WATDAAAKFGIPRLVF 146 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~~--~~~~~A~~lgiP~v~~ 146 (367)
.+..++++.++|+|.+-.... .+..+++++|+|++..
T Consensus 73 ~~~~~~~~~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~ 111 (367)
T cd05844 73 QLRRLLRRHRPDLVHAHFGFDGVYALPLARRLGVPLVVT 111 (367)
T ss_pred HHHHHHHhhCCCEEEeccCchHHHHHHHHHHcCCCEEEE
Confidence 344466778999988753222 3456788999999873
No 135
>PRK09165 replicative DNA helicase; Provisional
Probab=65.35 E-value=1e+02 Score=29.87 Aligned_cols=41 Identities=12% Similarity=0.010 Sum_probs=32.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC---------------CCeEEEEeCCCCcch
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATR---------------GVKASVITTPANAPY 49 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~r---------------Gh~Vt~~t~~~~~~~ 49 (367)
=+++..-|+.|=..-.+.+|...+.+ |..|.|++.+-..+.
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~q 274 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQ 274 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHH
Confidence 36677889999999999999988754 788999998755433
No 136
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=65.19 E-value=22 Score=26.85 Aligned_cols=41 Identities=10% Similarity=0.009 Sum_probs=35.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcch
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPY 49 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~ 49 (367)
||++.+.++-.|..-..-++.-|...|++|+++......+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~ 41 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEE 41 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 68899999999999999999999999999999887644333
No 137
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=65.04 E-value=41 Score=29.38 Aligned_cols=37 Identities=35% Similarity=0.530 Sum_probs=25.9
Q ss_pred HHHHhhhCCCCEEEec--CCCc----cHHHHHHHhCCCeEEEe
Q 041444 111 LEQLLRDHKPDCLVAD--IFFP----WATDAAAKFGIPRLVFH 147 (367)
Q Consensus 111 l~~~l~~~~~D~vi~D--~~~~----~~~~~A~~lgiP~v~~~ 147 (367)
+.+++++.++|+||-- +|+. -+..+|+++|+|++-|-
T Consensus 57 l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 57 LREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred HHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 5567777889987732 3332 14568899999999973
No 138
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=64.87 E-value=18 Score=28.38 Aligned_cols=47 Identities=26% Similarity=0.258 Sum_probs=34.3
Q ss_pred HhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEe
Q 041444 276 CLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLEASGRNFIWVVR 323 (367)
Q Consensus 276 l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~~~~~lW~~~ 323 (367)
+.+.++......+|+|++||.-....+.++++++.+. .+.+++|...
T Consensus 41 l~~~~~~~~~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 41 IRQLKDSGKLRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred HHHHHHcCCCCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 3333443234569999999998888899999988885 3578888654
No 139
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=64.51 E-value=7 Score=36.23 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=35.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhh
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVS 51 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~ 51 (367)
-|++=--|+-|--.-+++++..|++|| .|-|++.+....+++
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIK 136 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHH
Confidence 466777899999999999999999999 999999986554443
No 140
>PRK04328 hypothetical protein; Provisional
Probab=63.79 E-value=98 Score=26.79 Aligned_cols=44 Identities=11% Similarity=-0.093 Sum_probs=35.8
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchh
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 50 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~ 50 (367)
..-+++.-.|+.|-..-.++++.+-+++|..+.+++.+...+.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i 66 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQV 66 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHH
Confidence 34577888999999999999988888899999999987654433
No 141
>PRK06321 replicative DNA helicase; Provisional
Probab=63.78 E-value=1.4e+02 Score=28.71 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=32.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCCCcc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFAT-RGVKASVITTPANAP 48 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~-rGh~Vt~~t~~~~~~ 48 (367)
=+++..-|+.|=..-.+.+|...+. .|..|.|++.+-...
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ 268 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVD 268 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHH
Confidence 3567778999999999999999984 589999998875443
No 142
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=63.74 E-value=60 Score=29.73 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=37.0
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCc
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANA 47 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~r--Gh~Vt~~t~~~~~ 47 (367)
++.+|+++-....|.+.-..++.+.|.++ +.+|++++.....
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~ 47 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTI 47 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChH
Confidence 35689999999999999999999999997 8999999987544
No 143
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=63.66 E-value=7.7 Score=31.97 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 041444 24 IVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t~~ 44 (367)
-..||+++..||++||+++..
T Consensus 32 G~~lA~~~~~~Ga~V~li~g~ 52 (185)
T PF04127_consen 32 GAALAEEAARRGAEVTLIHGP 52 (185)
T ss_dssp HHHHHHHHHHTT-EEEEEE-T
T ss_pred HHHHHHHHHHCCCEEEEEecC
Confidence 368999999999999999987
No 144
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=63.64 E-value=75 Score=25.44 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=31.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
.-|-+++.++.|=....+.+|-+.+.+|++|.++-
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45778899999999999999999999999999854
No 145
>PRK07773 replicative DNA helicase; Validated
Probab=63.44 E-value=1.2e+02 Score=31.98 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=33.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCCCcch
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTPANAPY 49 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~r-Gh~Vt~~t~~~~~~~ 49 (367)
=+++..-|+.|=..-.+.+|...+.+ |..|.|++.+-....
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~q 260 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQ 260 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHH
Confidence 36678899999999999999999865 788999998755433
No 146
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=63.33 E-value=1.2e+02 Score=28.55 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=33.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCCCCcch
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFA-TRGVKASVITTPANAPY 49 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~-~rGh~Vt~~t~~~~~~~ 49 (367)
=+++...|+.|=..-.+.+|..++ +.|+.|.|++.+-....
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~ 237 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQ 237 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHH
Confidence 356777899999999999999988 67999999998754433
No 147
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=62.76 E-value=8.6 Score=32.79 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 20 HMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 20 H~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
|+..|.+.+.+|.++|++|+++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 67889999999999999999998763
No 148
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=62.54 E-value=34 Score=29.20 Aligned_cols=42 Identities=17% Similarity=0.059 Sum_probs=35.4
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcc
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAP 48 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~ 48 (367)
..-+++.-.|+.|-..-..+++.+.+++|..|.|++.+...+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~ 66 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSK 66 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHH
Confidence 345677889999999999999999888999999999975543
No 149
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=62.50 E-value=25 Score=24.32 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=29.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEE
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVI 41 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~ 41 (367)
.-++++......|..=+.++|+.|+++|..|..+
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5577777777899999999999999999998754
No 150
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=62.20 E-value=14 Score=30.71 Aligned_cols=39 Identities=8% Similarity=-0.010 Sum_probs=29.6
Q ss_pred CccEEEEEcCCCcccHHH-HHHHHHHHHhCCCeEEEEeCCC
Q 041444 6 PQLHVFFFPFMAHGHMIP-IVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p-~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+..||++--.++ +...- ...|+++|.++||+|+++.++.
T Consensus 4 ~~k~IllgVTGs-iaa~k~a~~lir~L~k~G~~V~vv~T~a 43 (196)
T PRK08305 4 KGKRIGFGLTGS-HCTYDEVMPEIEKLVDEGAEVTPIVSYT 43 (196)
T ss_pred CCCEEEEEEcCH-HHHHHHHHHHHHHHHhCcCEEEEEECHh
Confidence 345676666555 45555 7999999999999999988874
No 151
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=62.15 E-value=7.2 Score=31.10 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=24.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+|+++..+..|+ ++|..|+++||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 355555554444 78999999999999998763
No 152
>PRK14099 glycogen synthase; Provisional
Probab=61.91 E-value=14 Score=35.65 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=31.4
Q ss_pred CccEEEEEcCCC------cccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 6 PQLHVFFFPFMA------HGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 6 ~~~~vl~~p~p~------~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
++.||++++.-. -|=-..+-.|.++|+++||+|.++++..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 457788776432 2556788999999999999999999854
No 153
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=61.84 E-value=54 Score=26.98 Aligned_cols=99 Identities=16% Similarity=0.241 Sum_probs=46.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCcch-hhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANAPY-VSKSVERANELGIELDVKTIKFPSVEAGLPDGCENL 85 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~r--Gh~Vt~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (367)
.++.+-..+.|=++...+|+++|.++ |++|.+-|+...... ..+.. +..+...-+|. +
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~------~~~v~~~~~P~---------D---- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL------PDRVDVQYLPL---------D---- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-------GGG-SEEE------------S----
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC------CCCeEEEEeCc---------c----
Confidence 56666677789999999999999987 888776665332211 11111 11122222221 0
Q ss_pred cccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCcc--HHHHHHHhCCCeEEEe
Q 041444 86 DAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPW--ATDAAAKFGIPRLVFH 147 (367)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~--~~~~A~~lgiP~v~~~ 147 (367)
....++.+++..+||++|.=-.-.| ....|++.|||++.++
T Consensus 83 ---------------------~~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 83 ---------------------FPWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp ---------------------SHHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEE
T ss_pred ---------------------CHHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 0123456666778988764433344 4567888999999964
No 154
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=61.73 E-value=98 Score=29.34 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=33.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCCCcch
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFAT-RGVKASVITTPANAPY 49 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~-rGh~Vt~~t~~~~~~~ 49 (367)
=+++...|+.|=..-.+.++..++. .|+.|.+++.+.....
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~ 238 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQ 238 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHH
Confidence 3567778999999999999999886 5999999998865443
No 155
>PRK14098 glycogen synthase; Provisional
Probab=60.90 E-value=16 Score=35.33 Aligned_cols=38 Identities=8% Similarity=0.148 Sum_probs=30.6
Q ss_pred cEEEEEcCCC------cccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 8 LHVFFFPFMA------HGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 8 ~~vl~~p~p~------~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.||++++.-. -|=-..+-.|.++|+++||+|.++++..
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 7888877542 2556778899999999999999999854
No 156
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=60.81 E-value=1.2e+02 Score=28.10 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=34.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcch
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPY 49 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~ 49 (367)
-+++.--|+.|=..-+++++..++++|.+|.|++.+...+.
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~q 124 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQ 124 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHH
Confidence 45677788999999999999999999999999988754433
No 157
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=60.49 E-value=62 Score=27.34 Aligned_cols=44 Identities=11% Similarity=-0.004 Sum_probs=35.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhh
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVS 51 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~ 51 (367)
.-+++...|+.|=..-.++++.+-+++|+.|.+++.+...+.+.
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~ 60 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERIL 60 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHH
Confidence 34667778899999999999999888999999999986554443
No 158
>PRK08506 replicative DNA helicase; Provisional
Probab=60.32 E-value=1.7e+02 Score=28.28 Aligned_cols=40 Identities=10% Similarity=0.024 Sum_probs=34.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAP 48 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~ 48 (367)
=+++..-|+.|=..-.+.+|...++.|+.|.|++.+-...
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ 233 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAE 233 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHH
Confidence 3667778999999999999999999999999999885543
No 159
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=58.23 E-value=19 Score=30.84 Aligned_cols=33 Identities=33% Similarity=0.383 Sum_probs=25.0
Q ss_pred CCCEEE-ecCCCc-cHHHHHHHhCCCeEEEecchh
Q 041444 119 KPDCLV-ADIFFP-WATDAAAKFGIPRLVFHGTSF 151 (367)
Q Consensus 119 ~~D~vi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 151 (367)
-||+++ .|+-.- -+..-|.++|||+|.++-+.+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 389755 777554 467789999999999876644
No 160
>PRK05636 replicative DNA helicase; Provisional
Probab=57.99 E-value=1e+02 Score=29.94 Aligned_cols=38 Identities=5% Similarity=0.055 Sum_probs=31.0
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCCCc
Q 041444 10 VFFFPFMAHGHMIPIVDMAKLFAT-RGVKASVITTPANA 47 (367)
Q Consensus 10 vl~~p~p~~gH~~p~l~La~~L~~-rGh~Vt~~t~~~~~ 47 (367)
+++..-|+.|=..-.+.+|...+. .|..|.+++.+-..
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~ 306 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSK 306 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCH
Confidence 567778999999999999988874 58899999877544
No 161
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=57.21 E-value=23 Score=28.55 Aligned_cols=43 Identities=23% Similarity=0.420 Sum_probs=27.5
Q ss_pred hHHHHHHHhhhCCCCEEEecCCCcc-H-HH-H-HH-Hh-CCCeEEEecc
Q 041444 107 LQEPLEQLLRDHKPDCLVADIFFPW-A-TD-A-AA-KF-GIPRLVFHGT 149 (367)
Q Consensus 107 ~~~~l~~~l~~~~~D~vi~D~~~~~-~-~~-~-A~-~l-giP~v~~~~~ 149 (367)
..+.+.+++++.+||+||+-..+.. . +. + .+ .+ ++|.+.+.|-
T Consensus 77 ~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 77 FARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 3557888888999999998875543 3 22 2 12 23 4777665443
No 162
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=57.01 E-value=26 Score=28.15 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=24.6
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCC
Q 041444 284 QPNSVVYICFGSLANFTSAQLMEIATGLEASGR 316 (367)
Q Consensus 284 ~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~~~ 316 (367)
+..-.+|+++||...-..+.++...+.|++.+.
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~~ 37 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAAPG 37 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhCCC
Confidence 445578999999986566777777777876543
No 163
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=56.99 E-value=1.8e+02 Score=27.61 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=37.4
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcc
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAP 48 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~ 48 (367)
+..|+++-.-|.|-..-.-.||+.|.++|+.|-+++.+...+
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 456889999999999999999999999999999999876654
No 164
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=56.53 E-value=20 Score=32.25 Aligned_cols=37 Identities=5% Similarity=0.002 Sum_probs=26.5
Q ss_pred EEEEEcCCC-cccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPFMA-HGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p~-~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
||+++..-. .+--.-+..+++.|.++||+|++++...
T Consensus 1 ki~~~~~~~~~~~~~~~~~~~~~L~~~g~~v~v~~~~~ 38 (355)
T cd03799 1 KIAYLVKEFPRLSETFILREILALEAAGHEVEIFSLRP 38 (355)
T ss_pred CEEEECCCCCCcchHHHHHHHHHHHhCCCeEEEEEecC
Confidence 355544322 2345668999999999999999999653
No 165
>PLN02316 synthase/transferase
Probab=56.38 E-value=23 Score=37.37 Aligned_cols=41 Identities=10% Similarity=0.192 Sum_probs=30.8
Q ss_pred CccEEEEEcCCC-----c-ccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 6 PQLHVFFFPFMA-----H-GHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 6 ~~~~vl~~p~p~-----~-gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
+++||++++.-. . |=-..+..|+++|+++||+|.++++...
T Consensus 586 ~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 586 PPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD 632 (1036)
T ss_pred CCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 457888876321 2 3345568999999999999999998643
No 166
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=56.11 E-value=27 Score=31.73 Aligned_cols=41 Identities=22% Similarity=0.414 Sum_probs=29.9
Q ss_pred hhHHHHHHHhhhCCCCEEEecCCCc-------cH---HHHHHHhCCCeEEE
Q 041444 106 KLQEPLEQLLRDHKPDCLVADIFFP-------WA---TDAAAKFGIPRLVF 146 (367)
Q Consensus 106 ~~~~~l~~~l~~~~~D~vi~D~~~~-------~~---~~~A~~lgiP~v~~ 146 (367)
.....+.++++..+||++|+-+.+. |+ ..+.++++||++.-
T Consensus 67 ea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 67 EALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 3456677788889999999997552 22 23567899999873
No 167
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=55.22 E-value=12 Score=32.30 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=21.3
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 19 GHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 19 gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
|=-...-.|+++|+++||+|+++++..
T Consensus 17 GLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 445678899999999999999999864
No 168
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=55.04 E-value=18 Score=29.83 Aligned_cols=37 Identities=11% Similarity=0.130 Sum_probs=28.7
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
||++--.++.|=+.-...+.++|.++|++|+++.+..
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~ 38 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSET 38 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchh
Confidence 5666666665666666799999999999999888764
No 169
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=54.74 E-value=67 Score=25.91 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=34.5
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEE-EEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKAS-VITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt-~~t~~ 44 (367)
...+|++--.||.|-..-.+.++..|.++|++|- |+|++
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E 43 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE 43 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee
Confidence 3578999999999999999999999999999996 55554
No 170
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=51.93 E-value=40 Score=31.69 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=24.4
Q ss_pred EEcCCCcccHHHHHHHHHHHHhCCCeEE
Q 041444 12 FFPFMAHGHMIPIVDMAKLFATRGVKAS 39 (367)
Q Consensus 12 ~~p~p~~gH~~p~l~La~~L~~rGh~Vt 39 (367)
--|..+.|-....+.|.++|++||++|.
T Consensus 6 Ag~~SG~GKTTvT~glm~aL~~rg~~Vq 33 (451)
T COG1797 6 AGTSSGSGKTTVTLGLMRALRRRGLKVQ 33 (451)
T ss_pred ecCCCCCcHHHHHHHHHHHHHhcCCccc
Confidence 3456678999999999999999999986
No 171
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=50.99 E-value=20 Score=23.89 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 041444 25 VDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 25 l~La~~L~~rGh~Vt~~t~~ 44 (367)
+..|..|+++|++|+++=..
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 67789999999999998654
No 172
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=50.39 E-value=1.9e+02 Score=27.39 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=25.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.|+.++..++. ...+++.|.+-|-+|..+.+.
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~ 317 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTA 317 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecC
Confidence 47888887775 788888999999999877554
No 173
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=50.18 E-value=1.6e+02 Score=26.88 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=22.9
Q ss_pred EEEEEcCCCc----cc-HHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 9 HVFFFPFMAH----GH-MIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 9 ~vl~~p~p~~----gH-~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+|++++.... |- -.-+..|+++|.++ |+|++++..
T Consensus 2 kI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~ 41 (388)
T TIGR02149 2 KVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFG 41 (388)
T ss_pred eeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCC
Confidence 5666643332 22 24577999999987 788877754
No 174
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=49.80 E-value=23 Score=32.50 Aligned_cols=40 Identities=28% Similarity=0.220 Sum_probs=27.2
Q ss_pred hHHHHHHHhhhCCCCEEE--ecCCCc-cHHHHHHHhCCCeEEE
Q 041444 107 LQEPLEQLLRDHKPDCLV--ADIFFP-WATDAAAKFGIPRLVF 146 (367)
Q Consensus 107 ~~~~l~~~l~~~~~D~vi--~D~~~~-~~~~~A~~lgiP~v~~ 146 (367)
+...+.+.+.+.+||+|| -|.+.. ++..+|..++||++-+
T Consensus 55 ~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~Hi 97 (346)
T PF02350_consen 55 AIIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIPVAHI 97 (346)
T ss_dssp HHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCCEEEe
Confidence 345566677777999877 466554 4577899999998875
No 175
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=49.79 E-value=23 Score=31.86 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=27.8
Q ss_pred EEEEEcCC---CcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 9 HVFFFPFM---AHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 9 ~vl~~p~p---~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
||+++..- ..|--.-...|+++|+++||+|++++..
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~ 39 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVA 39 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEee
Confidence 45555422 3477788999999999999999998865
No 176
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=49.52 E-value=25 Score=28.83 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=29.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.||++...++.|=+ -...+.++|.++|++|.++.+...
T Consensus 2 k~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~A 39 (182)
T PRK07313 2 KNILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKAA 39 (182)
T ss_pred CEEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChhH
Confidence 46666666664444 489999999999999998888743
No 177
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=49.25 E-value=33 Score=28.26 Aligned_cols=39 Identities=13% Similarity=0.177 Sum_probs=25.3
Q ss_pred cEEEEEcC---CC-c-ccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 8 LHVFFFPF---MA-H-GHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 8 ~~vl~~p~---p~-~-gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.||+++.. |+ + |==.-...|+..|+++||+||+++....
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~ 45 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDY 45 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCC
Confidence 35565543 22 2 3334566778888889999999987543
No 178
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=48.64 E-value=1.2e+02 Score=25.94 Aligned_cols=44 Identities=11% Similarity=-0.099 Sum_probs=36.3
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchh
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 50 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~ 50 (367)
..-+++...|+.|-..-.++++.+-+++|-.+.|++.+...+.+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i 64 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQV 64 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHH
Confidence 34577888999999999999988877999999999988655443
No 179
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=48.37 E-value=56 Score=27.03 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=28.0
Q ss_pred HHHHHHHhhhCCCCEEEe-cCCC-ccHHHHHHHhCCCeEEEec
Q 041444 108 QEPLEQLLRDHKPDCLVA-DIFF-PWATDAAAKFGIPRLVFHG 148 (367)
Q Consensus 108 ~~~l~~~l~~~~~D~vi~-D~~~-~~~~~~A~~lgiP~v~~~~ 148 (367)
...+.+.++..++|+|+. +.-. ..+..+|.++|+|.+..--
T Consensus 39 ~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 39 GKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred HHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 344444555568999984 4333 3577899999999998643
No 180
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=47.68 E-value=46 Score=26.88 Aligned_cols=36 Identities=17% Similarity=0.036 Sum_probs=25.3
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
+..+|++++.++ -.=-=-+.+|+.|+++|++|+++.
T Consensus 24 ~~~~v~il~G~G-nNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 24 KGPRVLILCGPG-NNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp TT-EEEEEE-SS-HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCeEEEEECCC-CChHHHHHHHHHHHHCCCeEEEEE
Confidence 467888888776 112226788999999999999844
No 181
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=47.55 E-value=1.7e+02 Score=24.46 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=30.5
Q ss_pred ccEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 7 QLHVFFFPFM-AHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 7 ~~~vl~~p~p-~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+..+-++..| ..|-..-++.-++....+|-.|.++++.-
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i 42 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI 42 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 4455555544 45899999999999999999999998763
No 182
>PLN02939 transferase, transferring glycosyl groups
Probab=47.53 E-value=40 Score=35.31 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=31.9
Q ss_pred CCccEEEEEcCCC------cccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 5 IPQLHVFFFPFMA------HGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 5 ~~~~~vl~~p~p~------~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.++.||++++.-. -|=-..+-.|.++|+++||+|.++++..
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 3568899876432 2444678899999999999999999864
No 183
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=46.21 E-value=99 Score=28.74 Aligned_cols=40 Identities=25% Similarity=0.415 Sum_probs=26.8
Q ss_pred HHHHHHHhhhCCCCEEE-ecC--CCccHHHHHHHhCCC--eEEEe
Q 041444 108 QEPLEQLLRDHKPDCLV-ADI--FFPWATDAAAKFGIP--RLVFH 147 (367)
Q Consensus 108 ~~~l~~~l~~~~~D~vi-~D~--~~~~~~~~A~~lgiP--~v~~~ 147 (367)
...+.+.+.+.+||+|| .|. |..-....+++.|++ ++.+.
T Consensus 71 ~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI 115 (373)
T PF02684_consen 71 FRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYI 115 (373)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEE
Confidence 34555566678999877 886 334455678888988 55543
No 184
>TIGR01498 folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. This model describes the folate biosynthesis enzyme 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. Alternate names include 6-hydroxymethyl-7,8-dihydropterin diphosphokinase and 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (HPPK). The extreme C-terminal region, of typically eight to thirty residues, is not included in the model. This enzyme may be found as a fusion protein with other enzymes of folate biosynthesis.
Probab=45.92 E-value=21 Score=27.38 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=21.3
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCcE
Q 041444 289 VYICFGSLANFTSAQLMEIATGLEASGRNF 318 (367)
Q Consensus 289 IyvsfGS~~~~~~~~~~~~~~al~~~~~~~ 318 (367)
+|+|+||...-+.+.++.....|++.+..+
T Consensus 1 ~~i~lGSN~g~~~~~l~~A~~~L~~~~~~i 30 (127)
T TIGR01498 1 AYIALGSNLGDRLKNLRAALAALAALPVRL 30 (127)
T ss_pred CEEEEeCCcHhHHHHHHHHHHHHhcCCcce
Confidence 599999998655566777777777655333
No 185
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=45.75 E-value=76 Score=23.64 Aligned_cols=36 Identities=14% Similarity=-0.032 Sum_probs=31.2
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 10 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 10 vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
++....++..|.....-++..|.++|++|.++....
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~ 37 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDV 37 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCC
Confidence 567778888999999999999999999999886543
No 186
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=45.44 E-value=49 Score=25.88 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=36.6
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.++||++.+...-||-.=..-+++.|++.|.+|........
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~t 51 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQT 51 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCC
Confidence 68999999999999999999999999999999987765543
No 187
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=44.49 E-value=69 Score=25.78 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=31.6
Q ss_pred HhhHHHHHHHhhhCCCCEEEecCC-Cc------------cH--HHHHHHhCCCeEEEecch
Q 041444 105 TKLQEPLEQLLRDHKPDCLVADIF-FP------------WA--TDAAAKFGIPRLVFHGTS 150 (367)
Q Consensus 105 ~~~~~~l~~~l~~~~~D~vi~D~~-~~------------~~--~~~A~~lgiP~v~~~~~~ 150 (367)
..+.+.+.+++++.+||.++.|.. +. .+ ..++.+.|+|+.-+.+.-
T Consensus 47 ~~I~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~~ 107 (164)
T PRK00039 47 KQIYDGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPLQ 107 (164)
T ss_pred HHHHHHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 344567888888899999998853 32 11 235667788988876553
No 188
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=44.44 E-value=52 Score=30.80 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=29.8
Q ss_pred hhHHHHHHHhhhCCCCEEEecCCCc-------cH---HHHHHHhCCCeEEE
Q 041444 106 KLQEPLEQLLRDHKPDCLVADIFFP-------WA---TDAAAKFGIPRLVF 146 (367)
Q Consensus 106 ~~~~~l~~~l~~~~~D~vi~D~~~~-------~~---~~~A~~lgiP~v~~ 146 (367)
...+.+.++++..+||++|+-+.+. |+ ..+.+++|||.+.-
T Consensus 63 ea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 63 EAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 3456677788889999999997552 22 23566899999874
No 189
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=44.39 E-value=56 Score=26.98 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=28.8
Q ss_pred HHHHHhhhCCC--CEEEecCCCc-cHHHHHHHhCCCeEEEecchhh
Q 041444 110 PLEQLLRDHKP--DCLVADIFFP-WATDAAAKFGIPRLVFHGTSFF 152 (367)
Q Consensus 110 ~l~~~l~~~~~--D~vi~D~~~~-~~~~~A~~lgiP~v~~~~~~~~ 152 (367)
.+++++++... .++|-..+.. ++..+|+++|+|.|.+.|+-..
T Consensus 48 ~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~p 93 (187)
T PF05728_consen 48 QLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVRP 93 (187)
T ss_pred HHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCH
Confidence 34555555443 3555555554 5778999999999999877543
No 190
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=44.38 E-value=52 Score=30.82 Aligned_cols=41 Identities=15% Similarity=0.315 Sum_probs=29.9
Q ss_pred hhHHHHHHHhhhCCCCEEEecCCCc-------cH---HHHHHHhCCCeEEE
Q 041444 106 KLQEPLEQLLRDHKPDCLVADIFFP-------WA---TDAAAKFGIPRLVF 146 (367)
Q Consensus 106 ~~~~~l~~~l~~~~~D~vi~D~~~~-------~~---~~~A~~lgiP~v~~ 146 (367)
...+.+.++++..+||++|+-+.+. |+ ..+.+++|||.+.-
T Consensus 63 ea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 63 EAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 3456677788889999999997552 22 23566899999874
No 191
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=44.18 E-value=2.8e+02 Score=26.13 Aligned_cols=98 Identities=17% Similarity=0.354 Sum_probs=62.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEe-CCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVIT-TPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENL 85 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~r--Gh~Vt~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (367)
-++.+-..+.|-++-..+|.++|.++ ++.+++-| |+...+.++... +..+...-+|+ +
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~------~~~v~h~YlP~---------D---- 110 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF------GDSVIHQYLPL---------D---- 110 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc------CCCeEEEecCc---------C----
Confidence 47777788889999999999999999 88877666 333333333321 22222222221 1
Q ss_pred cccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEE-ecC-CCccHHHHHHHhCCCeEEE
Q 041444 86 DAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLV-ADI-FFPWATDAAAKFGIPRLVF 146 (367)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi-~D~-~~~~~~~~A~~lgiP~v~~ 146 (367)
....+..+++.++||++| .|. +.+....-+++.|+|.+.+
T Consensus 111 ---------------------~~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~Lv 152 (419)
T COG1519 111 ---------------------LPIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLV 152 (419)
T ss_pred ---------------------chHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEE
Confidence 011355677778999766 554 3344567788999999985
No 192
>PRK05920 aromatic acid decarboxylase; Validated
Probab=43.99 E-value=44 Score=28.00 Aligned_cols=38 Identities=11% Similarity=0.021 Sum_probs=28.9
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
..||++--.++ +...=...++++|.+.|++|+++.+..
T Consensus 3 ~krIllgITGs-iaa~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 3 MKRIVLAITGA-SGAIYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 35566554444 455678999999999999999998874
No 193
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=43.80 E-value=60 Score=28.23 Aligned_cols=47 Identities=13% Similarity=-0.007 Sum_probs=40.1
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhh
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSK 52 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~ 52 (367)
+..-+++.-.|+.|...-.++++.+.+++|..|.++|+....+.+..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~ 68 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLE 68 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHH
Confidence 34568899999999999999999999999999999999876544443
No 194
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=43.38 E-value=1.2e+02 Score=29.55 Aligned_cols=45 Identities=9% Similarity=0.081 Sum_probs=37.1
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhh
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVS 51 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~ 51 (367)
..-+++...|+.|-..-...++.+.+++|.+|.+++.+...+.+.
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~ 317 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLI 317 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHH
Confidence 345677888899999999999999999999999999876544443
No 195
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=43.37 E-value=1.1e+02 Score=28.09 Aligned_cols=34 Identities=12% Similarity=0.003 Sum_probs=23.2
Q ss_pred CCCCEEE-ecC--CCccHHHHHHHh--CCCeEEEecchh
Q 041444 118 HKPDCLV-ADI--FFPWATDAAAKF--GIPRLVFHGTSF 151 (367)
Q Consensus 118 ~~~D~vi-~D~--~~~~~~~~A~~l--giP~v~~~~~~~ 151 (367)
.+||++| .|. |.......+++. |+|++.+.+-..
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~Pqv 113 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILPQV 113 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccc
Confidence 5899877 686 344455567777 799988754433
No 196
>PRK09620 hypothetical protein; Provisional
Probab=43.31 E-value=26 Score=30.01 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 041444 25 VDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 25 l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+||++|.+||++|+++...
T Consensus 33 s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 33 RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHCCCeEEEEeCC
Confidence 68999999999999998754
No 197
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=43.20 E-value=80 Score=25.83 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=27.4
Q ss_pred HHHHHhhhCCCCEEEe-cCCC-ccHHHHHHHhCCCeEEE
Q 041444 110 PLEQLLRDHKPDCLVA-DIFF-PWATDAAAKFGIPRLVF 146 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~-D~~~-~~~~~~A~~lgiP~v~~ 146 (367)
.+.+..+..++|.|+. +.-. ..+..+|.+||+|+|..
T Consensus 44 ~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 4555556668999994 4433 35789999999999884
No 198
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=42.95 E-value=35 Score=28.74 Aligned_cols=35 Identities=9% Similarity=0.077 Sum_probs=30.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
-|.+-.+|+.|-..-..+||++|.+++|+|..++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 35667799999999999999999999999877654
No 199
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=42.80 E-value=56 Score=25.46 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=28.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
+.|+++-....|=..-+..|+++|.+||++|.++-
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 35778888888999999999999999999998554
No 200
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=42.63 E-value=47 Score=26.48 Aligned_cols=34 Identities=12% Similarity=-0.035 Sum_probs=25.5
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+..+|+++-.+. .-...++.|.+.|++||++++.
T Consensus 12 ~~~~vlVvGGG~-----va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGK-----IAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCH-----HHHHHHHHHHhCCCEEEEEcCc
Confidence 456777775443 3477899999999999999644
No 201
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=42.55 E-value=31 Score=28.32 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=25.8
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 10 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 10 vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
|++--.++.|-+.- ..|+++|.++|++|.++.++..
T Consensus 2 illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A 37 (181)
T TIGR00421 2 IVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWA 37 (181)
T ss_pred EEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccH
Confidence 44444444444444 7899999999999999988744
No 202
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=42.40 E-value=44 Score=27.31 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=27.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
||++.-.++ +...-...+.++|.++|++|.++.+..
T Consensus 2 ~I~lgvtGs-~~a~~~~~ll~~L~~~g~~V~vi~T~~ 37 (177)
T TIGR02113 2 KILLAVTGS-IAAYKAADLTSQLTKLGYDVTVLMTQA 37 (177)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEEEChH
Confidence 455554444 555566799999999999999888774
No 203
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=42.15 E-value=37 Score=23.17 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 23 PIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 23 p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.-+.+|..|+++|.+||++.....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccch
Confidence 457899999999999999987643
No 204
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=42.04 E-value=67 Score=24.04 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=33.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
||++..-++.|=......+++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999888775
No 205
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=41.98 E-value=45 Score=31.62 Aligned_cols=35 Identities=11% Similarity=0.316 Sum_probs=25.6
Q ss_pred HHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEe
Q 041444 110 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFH 147 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~ 147 (367)
.+++++++.+||++|.+. ....+|+++|+|.+.++
T Consensus 361 e~~~~i~~~~pdliig~~---~~~~~a~~~gip~~~~~ 395 (430)
T cd01981 361 EVGDMIARTEPELIFGTQ---MERHIGKRLDIPCAVIS 395 (430)
T ss_pred HHHHHHHhhCCCEEEecc---hhhHHHHHcCCCEEEEe
Confidence 355566667899999886 33456899999998764
No 206
>PRK04940 hypothetical protein; Provisional
Probab=41.59 E-value=78 Score=25.96 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=25.5
Q ss_pred CCCEEEecCCCc-cHHHHHHHhCCCeEEEecchh
Q 041444 119 KPDCLVADIFFP-WATDAAAKFGIPRLVFHGTSF 151 (367)
Q Consensus 119 ~~D~vi~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 151 (367)
+..++|--.+.. |+.-+|+++|+|.|.+.|.--
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~ 93 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNLF 93 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCCC
Confidence 456777555554 788999999999999987744
No 207
>PLN00016 RNA-binding protein; Provisional
Probab=41.06 E-value=35 Score=31.60 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=26.1
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+.+|+++..-+-|+=.--..|+++|+++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 45788772222233344567889999999999988754
No 208
>PRK13768 GTPase; Provisional
Probab=40.85 E-value=1.2e+02 Score=26.34 Aligned_cols=38 Identities=13% Similarity=0.292 Sum_probs=32.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
-+++...+|.|=..-...++..|+++|++|.++..++.
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 46677778889999999999999999999999987643
No 209
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=40.62 E-value=28 Score=29.78 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 041444 24 IVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t~ 43 (367)
-.+||++|+++||+|+++..
T Consensus 29 G~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 29 GKIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred HHHHHHHHHhCCCEEEEEEC
Confidence 36788999999999999864
No 210
>PRK06849 hypothetical protein; Provisional
Probab=40.38 E-value=63 Score=30.10 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=28.0
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
++.+|++... -....+++++.|.++||+|+++....
T Consensus 3 ~~~~VLI~G~----~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGA----RAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCC----CcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4677887752 33368999999999999999987764
No 211
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=40.28 E-value=53 Score=28.26 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=23.3
Q ss_pred CCccEEE-EEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 5 IPQLHVF-FFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 5 ~~~~~vl-~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+...+|+ ++|.|-- =..-+-.....|+++|++|++++-
T Consensus 8 ~~~~~vL~v~aHPDD-e~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 8 LDPLRVLVVFAHPDD-EEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred ccCCcEEEEecCCcc-hhhccHHHHHHHHHCCCeEEEEEc
Confidence 3455655 5555531 112244566777999999998774
No 212
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=39.78 E-value=78 Score=29.32 Aligned_cols=118 Identities=21% Similarity=0.157 Sum_probs=65.6
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCC-CeEEEEeCCCCcc-hhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCc
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRG-VKASVITTPANAP-YVSKSVERANELGIELDVKTIKFPSVEAGLPDGCEN 84 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rG-h~Vt~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (367)
+.||+ +.++.+=-++=|.+|.+++.+.+ .+..++.+....+ .+-... ++...+..|. -.+.-...
T Consensus 3 ~~Kv~-~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~---------le~~~i~~pd--y~L~i~~~- 69 (383)
T COG0381 3 MLKVL-TIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQV---------LELFGIRKPD--YDLNIMKP- 69 (383)
T ss_pred ceEEE-EEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHH---------HHHhCCCCCC--cchhcccc-
Confidence 34444 34566677888999999999987 7766666654331 111110 1111121110 01110000
Q ss_pred ccccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEe--cCCCc-cHHHHHHHhCCCeEEEecc
Q 041444 85 LDAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVA--DIFFP-WATDAAAKFGIPRLVFHGT 149 (367)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~--D~~~~-~~~~~A~~lgiP~v~~~~~ 149 (367)
...+.+....+...+.+++.+.+||+|++ |.... ++..+|.+++||+.-+-..
T Consensus 70 ------------~~tl~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAG 125 (383)
T COG0381 70 ------------GQTLGEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAG 125 (383)
T ss_pred ------------CCCHHHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecc
Confidence 01122333345567788888899999885 44433 4567888899999886544
No 213
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=39.76 E-value=41 Score=30.28 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=27.0
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
++++|+++-.++.| ..+|..|++.||+|+++.-.
T Consensus 4 ~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 4 ETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred cCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeC
Confidence 45689999777655 45778899999999999764
No 214
>PLN02293 adenine phosphoribosyltransferase
Probab=39.61 E-value=1.1e+02 Score=25.35 Aligned_cols=41 Identities=10% Similarity=0.035 Sum_probs=27.4
Q ss_pred hhHHHHHHHhhhCCCCEEEe-cCCC-ccHHHHHHHhCCCeEEE
Q 041444 106 KLQEPLEQLLRDHKPDCLVA-DIFF-PWATDAAAKFGIPRLVF 146 (367)
Q Consensus 106 ~~~~~l~~~l~~~~~D~vi~-D~~~-~~~~~~A~~lgiP~v~~ 146 (367)
.+.+.+.+.+++.++|+|+. |.-. ..+..+|..+|+|++..
T Consensus 49 ~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 49 DTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 33444555555567899884 4333 35778999999998764
No 215
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=38.76 E-value=72 Score=26.00 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=30.6
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+..++++..+|.|=..-..++++++.++|+.|.|++..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 45789999999998888999999999999999998754
No 216
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=38.70 E-value=48 Score=27.78 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=25.0
Q ss_pred CCCEEE-ecCCCc-cHHHHHHHhCCCeEEEecchh
Q 041444 119 KPDCLV-ADIFFP-WATDAAAKFGIPRLVFHGTSF 151 (367)
Q Consensus 119 ~~D~vi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 151 (367)
.||+|| .|+..- -+..-|.++|||+|.++-+..
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCC
Confidence 688766 777554 467789999999999876643
No 217
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.69 E-value=82 Score=26.64 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=25.6
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
|+...+..++++.- +.| .--..++++|+++|++|.++.-.
T Consensus 1 ~~~~~~~~~vlVtG--~sg--~iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 1 MAQSLQGKNALITG--AGR--GIGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred CCccCCCCEEEEEc--CCc--hHHHHHHHHHHHCCCEEEEEeCC
Confidence 44444444555543 223 45578899999999999887643
No 218
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=38.47 E-value=49 Score=27.54 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=24.8
Q ss_pred CCCEEE-ecCCCc-cHHHHHHHhCCCeEEEecchh
Q 041444 119 KPDCLV-ADIFFP-WATDAAAKFGIPRLVFHGTSF 151 (367)
Q Consensus 119 ~~D~vi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 151 (367)
.||+|| .|+..- -+..-|.++|||.|.++-+..
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTDN 142 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCC
Confidence 578755 777655 467789999999999876543
No 219
>PRK07236 hypothetical protein; Provisional
Probab=38.30 E-value=64 Score=29.93 Aligned_cols=37 Identities=11% Similarity=0.031 Sum_probs=29.1
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 3 SKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 3 ~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+++.+.+|+|+-.+ .--+.+|..|+++|++|+++=-.
T Consensus 2 ~~~~~~~ViIVGaG-----~aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 2 THMSGPRAVVIGGS-----LGGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCCCCeEEEECCC-----HHHHHHHHHHHhCCCCEEEEecC
Confidence 34667889888765 34588999999999999998743
No 220
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=38.04 E-value=45 Score=25.03 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 21 MIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 21 ~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+.++..+.-.+.-|||++|++.+..
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~y 33 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKY 33 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHH
Confidence 4567777778888999999998763
No 221
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=37.51 E-value=61 Score=31.59 Aligned_cols=35 Identities=11% Similarity=0.267 Sum_probs=25.8
Q ss_pred HHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEe
Q 041444 110 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFH 147 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~ 147 (367)
.+++.+++.+||+||.+. +...+|+++|+|++.++
T Consensus 365 ei~~~I~~~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 365 EVGDMIARVEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHhcCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 445566667899999886 34456899999997754
No 222
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=37.47 E-value=61 Score=24.75 Aligned_cols=38 Identities=13% Similarity=0.276 Sum_probs=28.5
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHh-CC-CcEEEEEec
Q 041444 287 SVVYICFGSLANFTSAQLMEIATGLEA-SG-RNFIWVVRK 324 (367)
Q Consensus 287 ~vIyvsfGS~~~~~~~~~~~~~~al~~-~~-~~~lW~~~~ 324 (367)
+++.++|||...-..+.+.++.+.+.+ .+ ..|-|.+-+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 689999999987555678888888853 44 478888754
No 223
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=37.18 E-value=93 Score=27.42 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=34.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
..|+++..+|.|=..-...||..|+++|++|.+++.+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 456678888999999999999999999999999998754
No 224
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=36.63 E-value=97 Score=25.67 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=35.3
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
++..|.++..++.|=....+.+|-+.+.+|++|.++-.-
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFl 59 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFI 59 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 467899999999999999999999999999999987643
No 225
>PLN02949 transferase, transferring glycosyl groups
Probab=36.44 E-value=4e+02 Score=25.63 Aligned_cols=128 Identities=13% Similarity=0.046 Sum_probs=64.3
Q ss_pred CccEEEEEcC-C--CcccHHHHHHHHHHHHhCCC--eEEEEeCCCCcchhhhhHhhhh-hcC----CCcceeeeeCCCcc
Q 041444 6 PQLHVFFFPF-M--AHGHMIPIVDMAKLFATRGV--KASVITTPANAPYVSKSVERAN-ELG----IELDVKTIKFPSVE 75 (367)
Q Consensus 6 ~~~~vl~~p~-p--~~gH~~p~l~La~~L~~rGh--~Vt~~t~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~ 75 (367)
.+.+|+|+-. . |.|==..+...+.+|.++|| +|+++|++-.... ...+.... ..+ ..+.|+.+.. .
T Consensus 32 ~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~-~~~l~~~~~~~~i~~~~~~~~v~l~~---~ 107 (463)
T PLN02949 32 RKRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASP-DSLAARARDRFGVELLSPPKVVHLRK---R 107 (463)
T ss_pred CCcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCH-HHHHHHHHhhcceecCCCceEEEecc---c
Confidence 4556776642 2 23556788899999999999 7888887632211 11111100 001 0122222210 0
Q ss_pred CCCCCCCCcccccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCc-cHHHHHHHhCCCeEEEecch
Q 041444 76 AGLPDGCENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFP-WATDAAAKFGIPRLVFHGTS 150 (367)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~-~~~~~A~~lgiP~v~~~~~~ 150 (367)
+-++... . ..+..++..+..+.-.++.+.+ . ++.|+.|.+.. .++.+++.+++|++.++=.+
T Consensus 108 ~~~~~~~-----~------~~~t~~~~~~~~~~l~~~~~~~-~-~p~v~vDt~~~~~~~pl~~~~~~~v~~yvH~p 170 (463)
T PLN02949 108 KWIEEET-----Y------PRFTMIGQSLGSVYLAWEALCK-F-TPLYFFDTSGYAFTYPLARLFGCKVVCYTHYP 170 (463)
T ss_pred ccccccc-----C------CceehHHHHHHHHHHHHHHHHh-c-CCCEEEeCCCcccHHHHHHhcCCcEEEEEeCC
Confidence 1111110 1 1122334444444445554433 2 45688998774 45667776699998865433
No 226
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=36.26 E-value=63 Score=31.48 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=25.9
Q ss_pred HHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEe
Q 041444 110 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFH 147 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~ 147 (367)
.+++.+++.+||+||.+. ....+|+++|+|++.++
T Consensus 355 ei~~~i~~~~pdliiG~~---~er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 355 EVADAIAALEPELVLGTQ---MERHSAKRLDIPCGVIS 389 (511)
T ss_pred HHHHHHHhcCCCEEEECh---HHHHHHHHcCCCEEEec
Confidence 455566667899999876 45567899999988754
No 227
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=36.20 E-value=2.8e+02 Score=24.06 Aligned_cols=36 Identities=31% Similarity=0.315 Sum_probs=26.0
Q ss_pred HHHHhhhCCCCEEEecCCCccH----HHHHHHhCCCeEEE
Q 041444 111 LEQLLRDHKPDCLVADIFFPWA----TDAAAKFGIPRLVF 146 (367)
Q Consensus 111 l~~~l~~~~~D~vi~D~~~~~~----~~~A~~lgiP~v~~ 146 (367)
-.++++..+.|+||+=--...+ ..+|..+|+|+|.+
T Consensus 186 n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 186 NRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred HHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 3467778899999975322212 36899999999995
No 228
>PRK08939 primosomal protein DnaI; Reviewed
Probab=36.09 E-value=43 Score=30.15 Aligned_cols=38 Identities=16% Similarity=0.360 Sum_probs=33.7
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
...+.+...+|.|=..-+.++|.+|+++|..|++++.+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 34688998999999999999999999999999998865
No 229
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=35.78 E-value=94 Score=21.36 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=27.6
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 10 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 10 vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
+++...++.|=..-...|+..|+++|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455566678888999999999999999998765
No 230
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=35.64 E-value=35 Score=32.72 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=31.4
Q ss_pred CccEEEEEcCCCcccHHHH------------HHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPI------------VDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~------------l~La~~L~~rGh~Vt~~t~~ 44 (367)
+..||++-..|..=-+.|. .+||+++..||++||+++.+
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp 305 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGP 305 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4567888888777666655 57899999999999999865
No 231
>PRK13604 luxD acyl transferase; Provisional
Probab=35.50 E-value=82 Score=28.35 Aligned_cols=35 Identities=9% Similarity=0.088 Sum_probs=27.6
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEE
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVI 41 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~ 41 (367)
+...+++..+..++-.-+..+|+.|+++|..|..+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 44566777777677667999999999999998654
No 232
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=35.37 E-value=1e+02 Score=28.89 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=32.5
Q ss_pred ccEEEEEc-CCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 7 QLHVFFFP-FMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 7 ~~~vl~~p-~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.+.|+++| ..+.||-.-+++++.++.++|++|.++..-.
T Consensus 125 ~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 125 DPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred CcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCC
Confidence 46677777 5567999999999999999999999988653
No 233
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=35.21 E-value=36 Score=30.41 Aligned_cols=31 Identities=19% Similarity=0.142 Sum_probs=21.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
+-++++..+-| --.+.|++||+||.+|.+++
T Consensus 50 ~WAVVTGaTDG---IGKayA~eLAkrG~nvvLIs 80 (312)
T KOG1014|consen 50 SWAVVTGATDG---IGKAYARELAKRGFNVVLIS 80 (312)
T ss_pred CEEEEECCCCc---chHHHHHHHHHcCCEEEEEe
Confidence 44555544433 23678999999999988876
No 234
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=35.05 E-value=71 Score=31.22 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=24.6
Q ss_pred HHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEe
Q 041444 110 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFH 147 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~ 147 (367)
.+++.+++.+||+||.+. ....+|+++|+|++.++
T Consensus 353 el~~~i~~~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEAAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhcCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 445555667889888765 34458889999987754
No 235
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=34.98 E-value=83 Score=24.96 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=30.0
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 10 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 10 vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
|.++...+.|=..-+..|+++|.++|++|.++-..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 45777788899999999999999999999988643
No 236
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=34.64 E-value=73 Score=27.75 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=31.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.|+++.=+|-|-..-...||..|+++|++|.++=.++
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4677777788999999999999999999998875554
No 237
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=34.63 E-value=1.2e+02 Score=25.07 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=26.6
Q ss_pred HHHHHHhhhCCCCEEE-ecCCC-ccHHHHHHHhCCCeEEEe
Q 041444 109 EPLEQLLRDHKPDCLV-ADIFF-PWATDAAAKFGIPRLVFH 147 (367)
Q Consensus 109 ~~l~~~l~~~~~D~vi-~D~~~-~~~~~~A~~lgiP~v~~~ 147 (367)
..+.+.++..++|+|+ .+.-. ..+..+|.++|+|.+..-
T Consensus 40 ~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vR 80 (191)
T TIGR01744 40 EEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFAR 80 (191)
T ss_pred HHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 3444444556899998 44333 346778999999999864
No 238
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=34.58 E-value=50 Score=24.18 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCC
Q 041444 22 IPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 22 ~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.|.+.|+++|.++|.+|.+.=+.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~ 39 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPY 39 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TT
T ss_pred CHHHHHHHHHHHCCCEEEEECCc
Confidence 68999999999999998887554
No 239
>PRK06835 DNA replication protein DnaC; Validated
Probab=34.57 E-value=74 Score=28.96 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=32.7
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
...|+++..+|.|=..-..++|++|.++|+.|.+++..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~ 220 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTAD 220 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence 35688888889888888899999999999999988865
No 240
>PRK10239 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional
Probab=34.46 E-value=44 Score=26.79 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=21.5
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCC
Q 041444 288 VVYICFGSLANFTSAQLMEIATGLEASG 315 (367)
Q Consensus 288 vIyvsfGS~~~~~~~~~~~~~~al~~~~ 315 (367)
.+|+++||...-+.+.++...+.|++.+
T Consensus 3 ~v~i~lGSN~g~~~~~l~~A~~~L~~~~ 30 (159)
T PRK10239 3 VAYIAIGSNLASPLEQVNAALKALGDIP 30 (159)
T ss_pred EEEEEEeCchhhHHHHHHHHHHHHhcCC
Confidence 5899999998756667777777777653
No 241
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=34.27 E-value=60 Score=26.45 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=24.1
Q ss_pred cccHHH-HHHHHHHHHh-CCCeEEEEeCCCCc
Q 041444 18 HGHMIP-IVDMAKLFAT-RGVKASVITTPANA 47 (367)
Q Consensus 18 ~gH~~p-~l~La~~L~~-rGh~Vt~~t~~~~~ 47 (367)
.||... ...+.++|.+ +||+|.++.+....
T Consensus 9 sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~ 40 (174)
T TIGR02699 9 SGDKLPETYSIMKDVKNRYGDEIDVFLSKAGE 40 (174)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEECHhHH
Confidence 388877 8899999984 69999999887543
No 242
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=34.13 E-value=68 Score=30.41 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=25.1
Q ss_pred HHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEE
Q 041444 110 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 146 (367)
.+++.+++.++|+||.+.. ...+|+++|+|++.+
T Consensus 362 el~~~i~~~~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 362 DLESLAKEEPVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred HHHHHhhccCCCEEEECch---hHHHHHhcCCCEEEe
Confidence 3445555678999998864 357888999999764
No 243
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=34.07 E-value=35 Score=30.90 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=25.2
Q ss_pred CCCEEE-ecCCCc-cHHHHHHHhCCCeEEEecchh
Q 041444 119 KPDCLV-ADIFFP-WATDAAAKFGIPRLVFHGTSF 151 (367)
Q Consensus 119 ~~D~vi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 151 (367)
.||+|| .|...- .+..=|.++|||+|.++-+..
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 688866 676554 577789999999999876643
No 244
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=33.83 E-value=44 Score=26.94 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=17.5
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 041444 25 VDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 25 l~La~~L~~rGh~Vt~~t~~ 44 (367)
..++++|.++||+|+.++-.
T Consensus 12 ~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 12 RALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCEEEEEecC
Confidence 56899999999999998854
No 245
>PRK03094 hypothetical protein; Provisional
Probab=33.39 E-value=41 Score=23.37 Aligned_cols=21 Identities=10% Similarity=0.341 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 041444 24 IVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+..+.++|.++||+|.=+..+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 457899999999999866543
No 246
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=33.39 E-value=86 Score=30.06 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=33.7
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEecC
Q 041444 284 QPNSVVYICFGSLANFTSAQLMEIATGLEASGRNFIWVVRKN 325 (367)
Q Consensus 284 ~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~~~~~lW~~~~~ 325 (367)
|++.|+|-||.+...++++.++.-++-|++.|...||..+..
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~ 323 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFP 323 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETS
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCC
Confidence 457799999999999999999999999999999999998754
No 247
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=33.33 E-value=96 Score=21.67 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=27.5
Q ss_pred cEEEEEcCCCc--ccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 8 LHVFFFPFMAH--GHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 8 ~~vl~~p~p~~--gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
-+|+++|.... .+..-...++..|.+.|..|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 46888887653 466678899999999999998754
No 248
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=33.29 E-value=43 Score=29.47 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 041444 25 VDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 25 l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+|+.+|.+.||+||++|=.
T Consensus 12 ~~L~~~L~~~gh~v~iltR~ 31 (297)
T COG1090 12 RALTARLRKGGHQVTILTRR 31 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcC
Confidence 57899999999999999954
No 249
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=33.12 E-value=78 Score=30.02 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=23.7
Q ss_pred HHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEE
Q 041444 110 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 146 (367)
.+++++++.++|++|.+.. ...+|+++|+|++.+
T Consensus 363 e~~~~l~~~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 363 DIESYAKELKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHhcCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 4455555667888887753 457888888888753
No 250
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=33.06 E-value=69 Score=26.56 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=24.9
Q ss_pred CCCCEEE-ecCCCc-cHHHHHHHhCCCeEEEecch
Q 041444 118 HKPDCLV-ADIFFP-WATDAAAKFGIPRLVFHGTS 150 (367)
Q Consensus 118 ~~~D~vi-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 150 (367)
..||+|| .|+... .+..-|.++|||.|++.-+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 4689876 666444 56778999999999987664
No 251
>cd00483 HPPK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is HPPK which catalyzes pyrophosphoryl transfer from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP). The functional enzyme is a monomer. Mammals lack many of the enzymes in the folate pathway including, HPPK.
Probab=32.99 E-value=45 Score=25.58 Aligned_cols=27 Identities=30% Similarity=0.262 Sum_probs=20.3
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCC
Q 041444 289 VYICFGSLANFTSAQLMEIATGLEASG 315 (367)
Q Consensus 289 IyvsfGS~~~~~~~~~~~~~~al~~~~ 315 (367)
+|+|+||...-+.+.++.....|++.+
T Consensus 1 ~~i~LGSN~~~~~~~l~~A~~~L~~~~ 27 (128)
T cd00483 1 VYLALGSNLGDRLANLRAALRALAALP 27 (128)
T ss_pred CEEEEeCCcHhHHHHHHHHHHHHHcCC
Confidence 589999998755666777777777654
No 252
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=32.96 E-value=44 Score=29.31 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=22.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
+-++++..+.| --.++|++|++|||+|.++.
T Consensus 7 ~~~lITGASsG---IG~~~A~~lA~~g~~liLva 37 (265)
T COG0300 7 KTALITGASSG---IGAELAKQLARRGYNLILVA 37 (265)
T ss_pred cEEEEECCCch---HHHHHHHHHHHCCCEEEEEe
Confidence 33444444433 34789999999999999876
No 253
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=32.82 E-value=71 Score=27.98 Aligned_cols=39 Identities=8% Similarity=0.175 Sum_probs=23.8
Q ss_pred cEEEEecCCCCCCCHH-HHHHHHHHHHhC--CCcEEEEEecC
Q 041444 287 SVVYICFGSLANFTSA-QLMEIATGLEAS--GRNFIWVVRKN 325 (367)
Q Consensus 287 ~vIyvsfGS~~~~~~~-~~~~~~~al~~~--~~~~lW~~~~~ 325 (367)
.++.+||||...-..+ -+..+-+.+++. +..|-|.+.++
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 5799999998865444 677776666543 56899998654
No 254
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=32.77 E-value=24 Score=17.45 Aligned_cols=17 Identities=24% Similarity=0.980 Sum_probs=13.1
Q ss_pred HHhhhhcCCCCCcEEEE
Q 041444 275 ECLKWLNSKQPNSVVYI 291 (367)
Q Consensus 275 ~l~~wLd~~~~~~vIyv 291 (367)
.|..|.++.++...+|.
T Consensus 4 kCiNWFE~~ge~r~lyL 20 (22)
T PF08452_consen 4 KCINWFESRGEERFLYL 20 (22)
T ss_pred EEeehhhhCCceeEEEE
Confidence 47789998887777775
No 255
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.61 E-value=96 Score=26.82 Aligned_cols=41 Identities=17% Similarity=0.044 Sum_probs=27.7
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
|.+..-+.|+++++..+.| .---.++|++|+++|++|.+..
T Consensus 1 ~~~~~~~~k~~lITGas~~-~GIG~a~a~~la~~G~~v~~~~ 41 (260)
T PRK06603 1 MTTGLLQGKKGLITGIANN-MSISWAIAQLAKKHGAELWFTY 41 (260)
T ss_pred CCCcccCCcEEEEECCCCC-cchHHHHHHHHHHcCCEEEEEe
Confidence 4333334578888877652 1144688999999999987753
No 256
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=32.49 E-value=1.9e+02 Score=22.34 Aligned_cols=44 Identities=7% Similarity=0.024 Sum_probs=36.5
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchh
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 50 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~ 50 (367)
+.+|++-...+-+|-.=-.-++..|...|++|..+-.....+.+
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~ 44 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEF 44 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 35789999999999999999999999999999988766444443
No 257
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=32.45 E-value=82 Score=27.88 Aligned_cols=43 Identities=23% Similarity=0.441 Sum_probs=31.3
Q ss_pred hHHHHHHHhhh-CCCCEEEecCCCc----c-HHHHHHHhCCCeEEEecc
Q 041444 107 LQEPLEQLLRD-HKPDCLVADIFFP----W-ATDAAAKFGIPRLVFHGT 149 (367)
Q Consensus 107 ~~~~l~~~l~~-~~~D~vi~D~~~~----~-~~~~A~~lgiP~v~~~~~ 149 (367)
+.+.++++|++ .+.-+||.|.|.- + .+.+|.+.++|++++--.
T Consensus 135 IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~ 183 (284)
T PF07894_consen 135 IKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDE 183 (284)
T ss_pred HHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEech
Confidence 45666677665 6889999999873 3 356777999999886433
No 258
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=32.38 E-value=1e+02 Score=25.58 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=32.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
-|+++-..|.|=..-...||.++..+|..|.++|.+...
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 467888889999999999999999999999999987553
No 259
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=32.33 E-value=1.1e+02 Score=24.51 Aligned_cols=37 Identities=11% Similarity=0.221 Sum_probs=31.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+-+.|+-+-..|=..-+..|+++|.+||+.|-++=..
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 3456888888999999999999999999999877543
No 260
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=32.20 E-value=1.3e+02 Score=26.49 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=23.2
Q ss_pred hhhCCCCEEEe-cCCC-ccHHHHHHHhCCCeEEE
Q 041444 115 LRDHKPDCLVA-DIFF-PWATDAAAKFGIPRLVF 146 (367)
Q Consensus 115 l~~~~~D~vi~-D~~~-~~~~~~A~~lgiP~v~~ 146 (367)
++..++|+|+. +.-. +.+..+|..||+|.+..
T Consensus 124 ~~~~~iD~VvgvetkGIpLA~avA~~L~vp~viv 157 (268)
T TIGR01743 124 FAEREIDAVMTVATKGIPLAYAVASVLNVPLVIV 157 (268)
T ss_pred hcCCCCCEEEEEccchHHHHHHHHHHHCCCEEEE
Confidence 33457999984 3333 35778999999999885
No 261
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=32.11 E-value=1e+02 Score=29.33 Aligned_cols=40 Identities=13% Similarity=0.370 Sum_probs=35.4
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
+..|+++..+|.|=..-...||..|.++|++|.+++.+..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 4467788899999999999999999999999999988754
No 262
>PRK12939 short chain dehydrogenase; Provisional
Probab=32.08 E-value=1.2e+02 Score=25.65 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=25.6
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
|++.++..++++.-.. | .--..+++.|+++||+|.++.
T Consensus 1 ~~~~~~~~~vlItGa~--g--~iG~~la~~l~~~G~~v~~~~ 38 (250)
T PRK12939 1 MASNLAGKRALVTGAA--R--GLGAAFAEALAEAGATVAFND 38 (250)
T ss_pred CCCCCCCCEEEEeCCC--C--hHHHHHHHHHHHcCCEEEEEe
Confidence 5555555566554422 2 345788999999999988774
No 263
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=31.95 E-value=1.6e+02 Score=24.34 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=29.9
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 10 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 10 vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
|+|+..++.-|-.-+..++++|++.|..|.++....
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~ 146 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGE 146 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 778888888887778899999999999998887543
No 264
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=31.72 E-value=84 Score=29.97 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=30.4
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
...+|+++-....| +..++.|.++|++|++.=...
T Consensus 6 ~~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~ 40 (448)
T COG0771 6 QGKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRP 40 (448)
T ss_pred cCCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCC
Confidence 37899999999888 999999999999999876443
No 265
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=31.71 E-value=80 Score=26.30 Aligned_cols=33 Identities=15% Similarity=0.025 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
.+..+|++..+.. .-..+++.|.+.|++|+++.
T Consensus 26 l~gk~v~I~G~G~-----vG~~~A~~L~~~G~~Vvv~D 58 (200)
T cd01075 26 LEGKTVAVQGLGK-----VGYKLAEHLLEEGAKLIVAD 58 (200)
T ss_pred CCCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEEc
Confidence 3456788777643 44788999999999999543
No 266
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=31.53 E-value=65 Score=30.47 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=25.1
Q ss_pred HHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEE
Q 041444 110 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 146 (367)
.+++++++.+||++|.... ...+|+++|||++.+
T Consensus 360 e~~~~i~~~~pDliig~~~---~~~~a~k~giP~~~~ 393 (421)
T cd01976 360 ELEEFVKRLKPDLIGSGIK---EKYVFQKMGIPFRQM 393 (421)
T ss_pred HHHHHHHHhCCCEEEecCc---chhhhhhcCCCeEeC
Confidence 4556666678999987764 556789999998654
No 267
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.37 E-value=56 Score=30.59 Aligned_cols=38 Identities=26% Similarity=0.513 Sum_probs=28.7
Q ss_pred ccEEEEEcCC-C--cccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 7 QLHVFFFPFM-A--HGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 7 ~~~vl~~p~p-~--~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+..+.+=|.. . -||+.|+..| ++|.+.||+|+++....
T Consensus 34 ~~Y~GfDPTa~slHlGhlv~l~kL-~~fQ~aGh~~ivLigd~ 74 (401)
T COG0162 34 RVYIGFDPTAPSLHLGHLVPLMKL-RRFQDAGHKPIVLIGDA 74 (401)
T ss_pred eEEEeeCCCCCccchhhHHHHHHH-HHHHHCCCeEEEEeccc
Confidence 3456666666 2 4999998876 57999999999988763
No 268
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=31.35 E-value=1.1e+02 Score=25.82 Aligned_cols=36 Identities=19% Similarity=0.087 Sum_probs=32.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
-+.+...|+.|...-.++++.+.+++|..|.|++++
T Consensus 25 i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 356888999999999999999999999999999988
No 269
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=30.86 E-value=94 Score=27.07 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=30.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+|+++.=+|-|=..-...||..|+++|++|-++=.+.
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~ 38 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDP 38 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 4677766778888999999999999999998874443
No 270
>PRK09213 pur operon repressor; Provisional
Probab=30.79 E-value=1.4e+02 Score=26.35 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=22.9
Q ss_pred hhhCCCCEEEe-cCCC-ccHHHHHHHhCCCeEEE
Q 041444 115 LRDHKPDCLVA-DIFF-PWATDAAAKFGIPRLVF 146 (367)
Q Consensus 115 l~~~~~D~vi~-D~~~-~~~~~~A~~lgiP~v~~ 146 (367)
++..++|+|+. +.-. +.+..+|..+|+|.+..
T Consensus 126 ~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~viv 159 (271)
T PRK09213 126 FADKKIDAVMTVETKGIPLAYAVANYLNVPFVIV 159 (271)
T ss_pred hcccCCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 33457999884 3333 35778999999998885
No 271
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=30.71 E-value=1.3e+02 Score=24.86 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=29.2
Q ss_pred cE-EEEE-cCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 8 LH-VFFF-PFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 8 ~~-vl~~-p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.| |+|. +-++.|=..-...||..|+++|++|.++=...
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 44 4444 34567888999999999999999998876553
No 272
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=30.62 E-value=89 Score=25.33 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=25.7
Q ss_pred HHHHHHhhhCCCCEEEecCCCcc--HHHHHHHhCCCeEEEe
Q 041444 109 EPLEQLLRDHKPDCLVADIFFPW--ATDAAAKFGIPRLVFH 147 (367)
Q Consensus 109 ~~l~~~l~~~~~D~vi~D~~~~~--~~~~A~~lgiP~v~~~ 147 (367)
..++++++ .+||+||....... ....-++.|||++.+.
T Consensus 60 ~n~E~ll~-l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 60 LNVELIVA-LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCHHHHhc-cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 45666654 79999998653332 3445578899998864
No 273
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=30.60 E-value=3.2e+02 Score=22.73 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=32.5
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
++.-|.+++..+.|-....+.+|-+-+-+|.+|-++-.
T Consensus 27 ~~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQF 64 (198)
T COG2109 27 EKGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQF 64 (198)
T ss_pred ccCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEE
Confidence 45568899999999999999999999999999887654
No 274
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=30.50 E-value=1.3e+02 Score=28.64 Aligned_cols=40 Identities=13% Similarity=0.285 Sum_probs=35.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
..|+++..+|.|=..-...||..|.++|++|.+++.+...
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4577888899999999999999999999999999987654
No 275
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.46 E-value=4.4e+02 Score=24.35 Aligned_cols=61 Identities=10% Similarity=0.082 Sum_probs=45.0
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKF 71 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (367)
.++.|+.++..+--||-==|.-=|.-|++.|.+|+++......+ ....++ .++|+++.++.
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p-~e~l~~-----hprI~ih~m~~ 70 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIP-LEELLN-----HPRIRIHGMPN 70 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCC-hHHHhc-----CCceEEEeCCC
Confidence 45778888889989998889999999999999999987543221 112221 36788888863
No 276
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=30.44 E-value=50 Score=25.73 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCeEEEEeCCC
Q 041444 25 VDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 25 l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.-+|..|+++||+|++++...
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHHCCCceEEEEccc
Confidence 457899999999999998763
No 277
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=30.32 E-value=68 Score=30.92 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=21.3
Q ss_pred HHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEE
Q 041444 112 EQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLV 145 (367)
Q Consensus 112 ~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~ 145 (367)
.+.+++.++|++|.. +....+|+++|+|++.
T Consensus 386 ~~~i~~~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 386 YKMLKEAKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHhhcCCCEEEec---CchhhhhhhcCCCEEE
Confidence 344455678888875 4556788888888763
No 278
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=30.17 E-value=72 Score=25.40 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=28.0
Q ss_pred HHHHHHHhhhCCCCEEEecCCCcc---HHHHHHHhCCCeEEEec
Q 041444 108 QEPLEQLLRDHKPDCLVADIFFPW---ATDAAAKFGIPRLVFHG 148 (367)
Q Consensus 108 ~~~l~~~l~~~~~D~vi~D~~~~~---~~~~A~~lgiP~v~~~~ 148 (367)
...+.+++++.+||+|+.-..... +..+|.+||.|++.-.+
T Consensus 79 a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 79 ADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp HHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 345666667778999997764442 45799999999988544
No 279
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=30.12 E-value=76 Score=28.21 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=23.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+|+|+-....| .++|+.|.++||+|+++.-.
T Consensus 2 kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 2 KIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred eEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 56666655554 57899999999999998754
No 280
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.09 E-value=91 Score=29.32 Aligned_cols=37 Identities=11% Similarity=0.022 Sum_probs=28.9
Q ss_pred CccEEEEEcCCCc--ccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 6 PQLHVFFFPFMAH--GHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 6 ~~~~vl~~p~p~~--gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
..++|++++.|+- |.-+. .|++|++.||.++++.+..
T Consensus 265 ~~P~V~Ilcgpgnnggdg~v---~gRHL~~~G~~~vi~~pk~ 303 (453)
T KOG2585|consen 265 QWPLVAILCGPGNNGGDGLV---CGRHLAQHGYTPVIYYPKR 303 (453)
T ss_pred CCceEEEEeCCCCccchhHH---HHHHHHHcCceeEEEeecC
Confidence 4568999999983 33333 9999999999999887653
No 281
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=30.05 E-value=1.3e+02 Score=25.69 Aligned_cols=39 Identities=15% Similarity=0.012 Sum_probs=24.4
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
|.+.++..+++ ++..+ | .--..++++|+++|++|.++.-
T Consensus 1 ~~~~~~~~~vl-ItGas-g--~iG~~la~~l~~~G~~v~~~~r 39 (262)
T PRK13394 1 MMSNLNGKTAV-VTGAA-S--GIGKEIALELARAGAAVAIADL 39 (262)
T ss_pred CcccCCCCEEE-EECCC-C--hHHHHHHHHHHHCCCeEEEEeC
Confidence 44444444444 44332 4 3456799999999999987654
No 282
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.00 E-value=92 Score=29.62 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+..+++++. .|+ .- +.+|+.|+++|++|+++...
T Consensus 4 ~~k~v~iiG---~g~-~G-~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 4 KGKKVLVVG---AGV-SG-LALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CCCEEEEEC---CCH-HH-HHHHHHHHHCCCEEEEEeCC
Confidence 345666663 355 33 49999999999999988654
No 283
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=29.98 E-value=93 Score=25.91 Aligned_cols=37 Identities=19% Similarity=0.069 Sum_probs=33.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.+|-+...||.|-..-+..++++|.++ +.+.+++.+-
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di 50 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDI 50 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEecee
Confidence 578899999999999999999999999 9999999764
No 284
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=29.77 E-value=2.6e+02 Score=22.52 Aligned_cols=84 Identities=11% Similarity=0.001 Sum_probs=45.7
Q ss_pred eEEecccccccHHHHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCC
Q 041444 221 GVAVNSFYELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFT 300 (367)
Q Consensus 221 ~~l~nt~~~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~ 300 (367)
-.++-+-.+.-..+.+.+++.+ |++.-+|-.+..-.. ....++.+.+.... .-+|+|++|+--+
T Consensus 49 v~llG~~~~~~~~~~~~l~~~y-p~l~i~g~~~g~~~~------------~~~~~i~~~I~~~~-pdiv~vglG~PkQ-- 112 (171)
T cd06533 49 VFLLGAKPEVLEKAAERLRARY-PGLKIVGYHHGYFGP------------EEEEEIIERINASG-ADILFVGLGAPKQ-- 112 (171)
T ss_pred EEEECCCHHHHHHHHHHHHHHC-CCcEEEEecCCCCCh------------hhHHHHHHHHHHcC-CCEEEEECCCCHH--
Confidence 3455555554444445566555 677766643332211 13444777777754 4499999987421
Q ss_pred HHHHHHHHHH-HHhCCCcEEEEEec
Q 041444 301 SAQLMEIATG-LEASGRNFIWVVRK 324 (367)
Q Consensus 301 ~~~~~~~~~a-l~~~~~~~lW~~~~ 324 (367)
+.++.. ...++..++-.++.
T Consensus 113 ----E~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 113 ----ELWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred ----HHHHHHHHHHCCCCEEEEece
Confidence 223222 33345676766654
No 285
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=29.69 E-value=1.1e+02 Score=22.93 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=28.7
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.++++-. ..|+...+..+++.+.++|..|..+|....
T Consensus 55 d~vi~is-~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 55 DLVIIIS-YSGETRELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp EEEEEEE-SSSTTHHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred ceeEeee-ccccchhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 3443333 568889999999999999999988887644
No 286
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=29.62 E-value=72 Score=29.12 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=34.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANA 47 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~r--Gh~Vt~~t~~~~~ 47 (367)
||+++-..+.|.+.-..++.+.|.++ +.+|++++.....
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~ 42 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCR 42 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhH
Confidence 69999999999999999999999996 8999999976443
No 287
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=29.54 E-value=50 Score=22.98 Aligned_cols=22 Identities=5% Similarity=0.223 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCC
Q 041444 24 IVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+-.+.++|.++||+|+=+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4578899999999998776553
No 288
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=29.51 E-value=83 Score=25.93 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=29.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFAT-RGVKASVITTPAN 46 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~-rGh~Vt~~t~~~~ 46 (367)
.||++--.++-+ ..=...|+++|.+ .||+|.++.+...
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A 40 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAA 40 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHH
Confidence 366666666655 5558999999999 5999999998743
No 289
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=29.49 E-value=65 Score=28.59 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=23.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+|+++-.+..| ..+|..|++.||+|+++..
T Consensus 2 ~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred EEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 56666655444 5688889999999999986
No 290
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=29.32 E-value=46 Score=29.07 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=24.9
Q ss_pred CCCEEE-ecCCCc-cHHHHHHHhCCCeEEEecchh
Q 041444 119 KPDCLV-ADIFFP-WATDAAAKFGIPRLVFHGTSF 151 (367)
Q Consensus 119 ~~D~vi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 151 (367)
.||+|| .|+-.- .+..-|.++|||+|.++-+..
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 588866 676544 467789999999999876543
No 291
>PRK07206 hypothetical protein; Provisional
Probab=29.20 E-value=2.8e+02 Score=26.00 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=23.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.+|+++-..+. -..+++++.++|+++.+++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 46676664322 3468899999999998888653
No 292
>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=29.09 E-value=1.8e+02 Score=26.50 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=54.0
Q ss_pred EEecccccccHHHHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCC--CCCcEEEEecCCCCCC
Q 041444 222 VAVNSFYELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSK--QPNSVVYICFGSLANF 299 (367)
Q Consensus 222 ~l~nt~~~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~--~~~~vIyvsfGS~~~~ 299 (367)
++-...+.+++--+.+++...+|-=+-|||-+... .--++.+-||-. +.+=.++.-||+--.
T Consensus 263 WIGeRTRq~D~AHVe~~rgv~NPig~K~GP~~~~d---------------~ll~l~d~LnP~nepGRLtLi~RmG~dKV- 326 (445)
T COG3200 263 WIGERTRQPDGAHVEFLRGVKNPIGVKIGPSMTPD---------------ELLELIDRLNPHNEPGRLTLIARMGADKV- 326 (445)
T ss_pred eecccccCCChhHHHHHHhcCCccccccCCCCCHH---------------HHHHHHHhcCCCCCCceEEeehhhcchHH-
Confidence 34455566666666677765555556677754211 112244445543 345578888888432
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEecC
Q 041444 300 TSAQLMEIATGLEASGRNFIWVVRKN 325 (367)
Q Consensus 300 ~~~~~~~~~~al~~~~~~~lW~~~~~ 325 (367)
.+.+-.+++|.++.|..|||...+-
T Consensus 327 -~d~LP~li~av~~eG~~VvWs~DPM 351 (445)
T COG3200 327 -GDRLPPLVEAVEAEGHQVIWSSDPM 351 (445)
T ss_pred -hhhhhHHHHHHHHcCCceEEecCCC
Confidence 2456678999999999999998653
No 293
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=28.94 E-value=87 Score=29.76 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=21.2
Q ss_pred HHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEE
Q 041444 110 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLV 145 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~ 145 (367)
.+++++++.++|++|... ....+|+++|+|++-
T Consensus 364 ~l~~~i~~~~~dliig~s---~~k~~A~~l~ip~ir 396 (432)
T TIGR01285 364 DLEDLACAAGADLLITNS---HGRALAQRLALPLVR 396 (432)
T ss_pred HHHHHHhhcCCCEEEECc---chHHHHHHcCCCEEE
Confidence 445555556777777554 345677777887765
No 294
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.88 E-value=1.4e+02 Score=28.19 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=35.9
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
+..|+++...|.|=..-+..||.+|..+|..|.+++.+..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~ 280 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 280 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence 4578899999999999999999999999999999998754
No 295
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=28.86 E-value=1.3e+02 Score=26.88 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=32.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.+|+|+.=+|-|=..-...||..|+++|++|-++=.+.
T Consensus 5 ~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 5 RQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 46777777788999999999999999999999985554
No 296
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=28.81 E-value=1.1e+02 Score=27.17 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=33.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
+|++.-=+|.|=......||..|+++|++|.++=.++.
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 48888888999999999999999999999988866543
No 297
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=28.80 E-value=1.6e+02 Score=23.55 Aligned_cols=41 Identities=22% Similarity=0.176 Sum_probs=29.3
Q ss_pred HHHHHHhhhCCCCEEEecCCCc---cHHHHHHHhCCCeEEEecc
Q 041444 109 EPLEQLLRDHKPDCLVADIFFP---WATDAAAKFGIPRLVFHGT 149 (367)
Q Consensus 109 ~~l~~~l~~~~~D~vi~D~~~~---~~~~~A~~lgiP~v~~~~~ 149 (367)
..+.+++++.+||+|+.-.-.. .+..+|.+||.|.+.-++.
T Consensus 73 ~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~ 116 (168)
T cd01715 73 PALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTA 116 (168)
T ss_pred HHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEEE
Confidence 4455666667899999765443 3567999999999885443
No 298
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=28.66 E-value=1.5e+02 Score=25.49 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=24.3
Q ss_pred HHHHhhhCCCCEEEec-CC-CccHHHHHHHhCCCeEEE
Q 041444 111 LEQLLRDHKPDCLVAD-IF-FPWATDAAAKFGIPRLVF 146 (367)
Q Consensus 111 l~~~l~~~~~D~vi~D-~~-~~~~~~~A~~lgiP~v~~ 146 (367)
+.+.++...+|+|+.= .- ...+..+|..||+|.+..
T Consensus 103 la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~ 140 (238)
T PRK08558 103 VAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYA 140 (238)
T ss_pred HHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEE
Confidence 3333444578998843 32 235778999999998874
No 299
>PRK14974 cell division protein FtsY; Provisional
Probab=28.64 E-value=1.3e+02 Score=27.43 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=35.0
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
+..|+|+..+|.|=..-+..||..|.++|++|.+++.+..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 3467788899999999999999999999999999887643
No 300
>PRK05973 replicative DNA helicase; Provisional
Probab=28.55 E-value=1.1e+02 Score=26.26 Aligned_cols=44 Identities=16% Similarity=0.053 Sum_probs=36.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhh
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVS 51 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~ 51 (367)
--+++..-||.|=..-.++++.+.+++|..|.|++.+.....+.
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~ 108 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVR 108 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHH
Confidence 34678889999999999999999999999999999886544333
No 301
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=28.54 E-value=51 Score=28.08 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 041444 24 IVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t~~ 44 (367)
-..+|+.|.++||+|+.+-..
T Consensus 12 G~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 12 GRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred HHHHHHHHHhCCCceEEEEcC
Confidence 368999999999999988654
No 302
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=28.50 E-value=1.2e+02 Score=25.46 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=26.4
Q ss_pred ccEEEEEcCCCc--ccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAH--GHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~--gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
..||++++.++- |+ -+-.|++|..+|++|+++...
T Consensus 49 ~~~v~vlcG~GnNGGD---G~VaAR~L~~~G~~V~v~~~~ 85 (203)
T COG0062 49 ARRVLVLCGPGNNGGD---GLVAARHLKAAGYAVTVLLLG 85 (203)
T ss_pred CCEEEEEECCCCccHH---HHHHHHHHHhCCCceEEEEeC
Confidence 467888887773 33 356789999999999988754
No 303
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=28.46 E-value=72 Score=33.72 Aligned_cols=33 Identities=6% Similarity=0.100 Sum_probs=26.3
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.+.||+++-.+-. -+..|..|+++||+||++-.
T Consensus 382 tgKKVaVVGaGPA-----GLsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 382 TNYNILVTGLGPA-----GFSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CCCeEEEECcCHH-----HHHHHHHHHhCCCeEEEEcc
Confidence 4568888875543 48899999999999999864
No 304
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=28.44 E-value=70 Score=28.03 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=34.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEEEeCCCCc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRG--VKASVITTPANA 47 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rG--h~Vt~~t~~~~~ 47 (367)
||+++-..+.|.+.-+.++.++|.++. -+|++++.....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~ 41 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFA 41 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhH
Confidence 588888899999999999999999974 799999987543
No 305
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=28.40 E-value=1.1e+02 Score=26.45 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=32.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.|+|+.=+|.|=..-...||..|+++|++|-++=.++.
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 57777777789999999999999999999998865543
No 306
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=28.34 E-value=56 Score=27.87 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhCCCeEEEEe
Q 041444 23 PIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 23 p~l~La~~L~~rGh~Vt~~t 42 (367)
--.++|++|+++|++|+++.
T Consensus 27 IG~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 27 LGKIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEc
Confidence 34688999999999999874
No 307
>PF01288 HPPK: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); InterPro: IPR000550 All organisms require reduced folate cofactors for the synthesis of a variety of metabolites. Most microorganisms must synthesise folate de novo because they lack the active transport system of higher vertebrate cells which allows these organisms to use dietary folates. Enzymes involved in folate biosynthesis are therefore targets for a variety of antimicrobial agents such as trimethoprim or sulphonamides. 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (2.7.6.3 from EC) (HPPK) catalyses the attachment of pyrophosphate to 6-hydroxymethyl-7,8-dihydropterin to form 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate. This is the first step in a three-step pathway leading to 7,8 dihydrofolate. Bacterial HPPK (gene folK or sulD) [] is a protein of 160 to 270 amino acids. In the lower eukaryote Pneumocystis carinii, HPPK is the central domain of a multifunctional folate synthesis enzyme (gene fas) [].; GO: 0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 2QX0_B 1RU1_B 2F65_A 1RU2_A 1EQ0_A 3ILJ_A 3HSJ_A 3HD1_A 1TMM_B 1RB0_A ....
Probab=28.28 E-value=77 Score=24.23 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=21.5
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHhCC
Q 041444 290 YICFGSLANFTSAQLMEIATGLEASG 315 (367)
Q Consensus 290 yvsfGS~~~~~~~~~~~~~~al~~~~ 315 (367)
|||+||...-+.+.++.....|++.+
T Consensus 1 ~i~LGSN~~~~~~~l~~A~~~L~~~~ 26 (127)
T PF01288_consen 1 YISLGSNLGDREQNLRQALQALSALP 26 (127)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHCST
T ss_pred CEEEeCchHhHHHHHHHHHHHHhcCC
Confidence 89999996667778888888888873
No 308
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=28.27 E-value=81 Score=29.79 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=26.5
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
+++.||+++-...-| +.++++|...+++||++.....
T Consensus 8 ~~~~~vVIvGgG~aG-----l~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAG-----AYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHH-----HHHHHHhCcCCCeEEEEcCCCC
Confidence 456788888765533 3457888777899999987643
No 309
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=28.26 E-value=48 Score=31.80 Aligned_cols=31 Identities=13% Similarity=0.024 Sum_probs=22.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
||+|+-.+ ..-+.-|.+|+++||+||++-..
T Consensus 2 rVai~GaG-----~AgL~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 2 RVAIAGAG-----LAGLAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred eEEEEccc-----HHHHHHHHHHHhCCCceEEEecc
Confidence 45555433 34478899999999999998754
No 310
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=28.16 E-value=4.9e+02 Score=24.14 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=26.1
Q ss_pred ccEEEEEc-CCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFP-FMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p-~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
..+|+++- .+..|. .+|+.|.++||+|+++...
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 46788887 666664 6889999999999998753
No 311
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=28.15 E-value=91 Score=24.04 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=31.8
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCC-eEEEEeC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGV-KASVITT 43 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh-~Vt~~t~ 43 (367)
..++++.++.-..+|.--+..++++|.++|. ++.++..
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 4678888888888999999999999999987 5666665
No 312
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=28.09 E-value=51 Score=28.14 Aligned_cols=34 Identities=32% Similarity=0.375 Sum_probs=25.2
Q ss_pred CCCCEEE-ecCCCc-cHHHHHHHhCCCeEEEecchh
Q 041444 118 HKPDCLV-ADIFFP-WATDAAAKFGIPRLVFHGTSF 151 (367)
Q Consensus 118 ~~~D~vi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 151 (367)
..||+|| .|+-.. .+..-|.++|||.|++.-+..
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCC
Confidence 3688866 676544 567789999999999875543
No 313
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=28.06 E-value=90 Score=26.04 Aligned_cols=42 Identities=24% Similarity=0.276 Sum_probs=26.9
Q ss_pred HHHHHHhhh-CCCCEEEecCCCccH--HHHHHHhCCCeEEEecch
Q 041444 109 EPLEQLLRD-HKPDCLVADIFFPWA--TDAAAKFGIPRLVFHGTS 150 (367)
Q Consensus 109 ~~l~~~l~~-~~~D~vi~D~~~~~~--~~~A~~lgiP~v~~~~~~ 150 (367)
+.++.+++. .++.-+|.|+|+..+ +.+|.++|..+|.+=...
T Consensus 179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~ 223 (231)
T PF01555_consen 179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDE 223 (231)
T ss_dssp HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSH
T ss_pred HHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCH
Confidence 445566654 567788999999743 568889999998875443
No 314
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=27.97 E-value=1.1e+02 Score=22.91 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=26.0
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+...|+++++... +...+..+++|.+.|.+++++..
T Consensus 8 ~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 8 EGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 3456777777665 35568888888888888887654
No 315
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=27.95 E-value=90 Score=29.19 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=30.4
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
..||++.-.++ +...-...++++|.++|++|+++.+...
T Consensus 3 ~k~IllgiTGS-iaa~~~~~ll~~L~~~g~~V~vv~T~~A 41 (390)
T TIGR00521 3 NKKILLGVTGG-IAAYKTVELVRELVRQGAEVKVIMTEAA 41 (390)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEEECHhH
Confidence 45777666665 5556689999999999999999888754
No 316
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=27.86 E-value=47 Score=25.71 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=20.6
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 19 GHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 19 gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
..+--.+-|+..|.++||+|++..++
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~np 36 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNP 36 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-H
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCH
Confidence 33445788999999999999998876
No 317
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=27.80 E-value=76 Score=29.20 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=28.5
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.+.+|+|+-..-.| +..|.+|+++|++|+++-...
T Consensus 3 ~~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecCc
Confidence 46788888866556 899999999999999887553
No 318
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=27.80 E-value=1.4e+02 Score=23.88 Aligned_cols=37 Identities=11% Similarity=0.265 Sum_probs=33.0
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 10 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 10 vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
+++.-.+|.|=......++..|+++|.+|.++..+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 5677889999999999999999999999999987754
No 319
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=27.77 E-value=1.3e+02 Score=27.06 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=31.1
Q ss_pred EEEE-EcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 9 HVFF-FPFMAHGHMIPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 9 ~vl~-~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
|+++ .-=+|-|=..--.++|..++++|++|-++++++.+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 4444 44566799999999999999999999999998654
No 320
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=27.77 E-value=1.1e+02 Score=23.07 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=37.0
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.+..|-+.|..|.+.+.|.-++.+.|.+--.++.++|+.+.
T Consensus 45 g~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqpD 85 (144)
T PF10657_consen 45 GKLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQPD 85 (144)
T ss_pred CceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCCC
Confidence 45788899999999999999999999999999999998764
No 321
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.67 E-value=1.1e+02 Score=27.62 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=36.0
Q ss_pred hHHHhhhhcCCCCCcEEEEecCCCC--CC----------C-------HHHHHHHHHHHHhCCCcEEEE
Q 041444 273 ELECLKWLNSKQPNSVVYICFGSLA--NF----------T-------SAQLMEIATGLEASGRNFIWV 321 (367)
Q Consensus 273 ~~~l~~wLd~~~~~~vIyvsfGS~~--~~----------~-------~~~~~~~~~al~~~~~~~lW~ 321 (367)
+..+.+.|++.++-.+|.|.||+.- .+ + ...+++|.+.......+|+|+
T Consensus 165 pk~i~~~l~~~~~~a~vVV~lGaND~q~~~~gd~~~kf~S~~W~~eY~kRvd~~l~ia~~~~~~V~Wv 232 (354)
T COG2845 165 PKAIPELLDKHPKPAAVVVMLGANDRQDFKVGDVYEKFRSDEWTKEYEKRVDAILKIAHTHKVPVLWV 232 (354)
T ss_pred HHHHHHHHHhcCCccEEEEEecCCCHHhcccCCeeeecCchHHHHHHHHHHHHHHHHhcccCCcEEEe
Confidence 5667888888877789999999974 11 1 234566777777778899998
No 322
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=27.61 E-value=83 Score=27.00 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=25.4
Q ss_pred CCCcccH-HHHHHHHHHHHhC--CCeEEEEeCCCC
Q 041444 15 FMAHGHM-IPIVDMAKLFATR--GVKASVITTPAN 46 (367)
Q Consensus 15 ~p~~gH~-~p~l~La~~L~~r--Gh~Vt~~t~~~~ 46 (367)
..|.|+. .=...|+++|.++ |++|.++.+...
T Consensus 6 itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a 40 (234)
T TIGR02700 6 ITGAGHLLVESFQVMKELKREIEELRVSTFVSRAG 40 (234)
T ss_pred EeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhH
Confidence 3444566 5789999999999 999999988743
No 323
>PRK13236 nitrogenase reductase; Reviewed
Probab=27.56 E-value=1.4e+02 Score=26.55 Aligned_cols=39 Identities=10% Similarity=0.105 Sum_probs=31.9
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
...|.|+.=+|-|=......||..|+++|++|-++=.+.
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~ 44 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDP 44 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 444556666778999999999999999999999986554
No 324
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=27.54 E-value=1.2e+02 Score=24.87 Aligned_cols=35 Identities=9% Similarity=-0.068 Sum_probs=26.1
Q ss_pred EEEEEcCCC----cccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMA----HGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~----~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+|.++.... ..+..-...|++.|+++||.+.+-..
T Consensus 2 ~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg 40 (178)
T TIGR00730 2 TVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGG 40 (178)
T ss_pred EEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCC
Confidence 577777654 35667788899999999998876543
No 325
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=27.47 E-value=1e+02 Score=24.64 Aligned_cols=33 Identities=9% Similarity=-0.043 Sum_probs=22.6
Q ss_pred cEEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEE
Q 041444 8 LHVFFFPFM--AHGHMIPIVDMAKLFATRGVKASV 40 (367)
Q Consensus 8 ~~vl~~p~p--~~gH~~p~l~La~~L~~rGh~Vt~ 40 (367)
.+|.++... ..-+..-...|+++|+++||.|..
T Consensus 2 ~~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv~ 36 (159)
T TIGR00725 2 VQIGVIGSSNKSEELYEIAYRLGKELAKKGHILIN 36 (159)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEc
Confidence 457777654 345556678889999999984433
No 326
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=27.33 E-value=1.3e+02 Score=25.73 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=29.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
-|.++...+.|=..-+..|+++|.+||++|-++-+
T Consensus 3 vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 3 AIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 35567778889999999999999999999998853
No 327
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=27.29 E-value=89 Score=28.02 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=26.6
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
++.+|+|+-.+..| .++|+.|+++||+|+++...
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 45678888665544 57899999999999988754
No 328
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=27.26 E-value=1.2e+02 Score=26.38 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=29.6
Q ss_pred HHHHHHhhhCCCCEEE--ecCCCcc----HHHHHHHhCCCeEEEec
Q 041444 109 EPLEQLLRDHKPDCLV--ADIFFPW----ATDAAAKFGIPRLVFHG 148 (367)
Q Consensus 109 ~~l~~~l~~~~~D~vi--~D~~~~~----~~~~A~~lgiP~v~~~~ 148 (367)
+.+++++++.++++|| +.+|+.- +..+|+++|+|++-|--
T Consensus 55 ~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 55 EGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred HHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 3566777888999988 4456642 45789999999999753
No 329
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=27.23 E-value=1.7e+02 Score=21.18 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=26.5
Q ss_pred HHHHHhhhCCCCEEEecCCCccH--HHHHHHhCCCeEE
Q 041444 110 PLEQLLRDHKPDCLVADIFFPWA--TDAAAKFGIPRLV 145 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~~~~--~~~A~~lgiP~v~ 145 (367)
.+.++++...+|+||.|.-.+.. ..+.+.+|++++-
T Consensus 48 ei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~~V~D 85 (95)
T PF13167_consen 48 EIKELIEELDADLVVFDNELSPSQQRNLEKALGVKVID 85 (95)
T ss_pred HHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHCCeeec
Confidence 45555566789999999876654 4688889988753
No 330
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.23 E-value=1.8e+02 Score=25.35 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=30.3
Q ss_pred HHHHhhhCCCCEEEecCCCcc--HHHHHHHhCCCeEEEecch
Q 041444 111 LEQLLRDHKPDCLVADIFFPW--ATDAAAKFGIPRLVFHGTS 150 (367)
Q Consensus 111 l~~~l~~~~~D~vi~D~~~~~--~~~~A~~lgiP~v~~~~~~ 150 (367)
+.+.+++.+..||+++..... +-.+|+..|++++.+.+.+
T Consensus 209 l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 209 LIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 444556678999999987764 4478999999998877654
No 331
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=27.19 E-value=1.6e+02 Score=23.24 Aligned_cols=41 Identities=20% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHhhh--CCCCEEEecC---------CCccHHHHHHHhCCCeEEEecc
Q 041444 109 EPLEQLLRD--HKPDCLVADI---------FFPWATDAAAKFGIPRLVFHGT 149 (367)
Q Consensus 109 ~~l~~~l~~--~~~D~vi~D~---------~~~~~~~~A~~lgiP~v~~~~~ 149 (367)
+.+.+.+++ ..+|+||.|. ......++++.++.|++.+...
T Consensus 87 ~~i~~~~~~l~~~~D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~ 138 (166)
T TIGR00347 87 EELSKHLRTLEQKYDFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRV 138 (166)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECC
No 332
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=27.13 E-value=1.2e+02 Score=27.67 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=31.7
Q ss_pred cEEEE--EcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFF--FPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~--~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+-|.+ +..+|.|=.--...|++.|.++|++|.+++-.
T Consensus 50 pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRG 88 (325)
T PRK00652 50 PVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRG 88 (325)
T ss_pred CEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCC
Confidence 34555 78889999999999999999999999998844
No 333
>PRK12829 short chain dehydrogenase; Provisional
Probab=27.09 E-value=98 Score=26.53 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.+..++++.-. .|.+ -..++++|+++||+|+.+.-
T Consensus 9 ~~~~~vlItGa--~g~i--G~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 9 LDGLRVLVTGG--ASGI--GRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred cCCCEEEEeCC--CCcH--HHHHHHHHHHCCCEEEEEeC
Confidence 34455555532 2444 47889999999999877664
No 334
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=27.03 E-value=1.5e+02 Score=25.17 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=29.7
Q ss_pred ccEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFM-AHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p-~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+..|+|+.-. -.+...+.....++|.+||++|.++++.
T Consensus 150 ~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 150 RTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred CcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 4456777766 5688888888888888888888888876
No 335
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.99 E-value=72 Score=23.96 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCeEEEEe
Q 041444 24 IVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t 42 (367)
++.+|++|++||.+|+..-
T Consensus 25 ~~~VA~~L~e~g~dv~atD 43 (129)
T COG1255 25 FLDVAKRLAERGFDVLATD 43 (129)
T ss_pred HHHHHHHHHHcCCcEEEEe
Confidence 6889999999999988654
No 336
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=26.84 E-value=68 Score=26.98 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCC
Q 041444 24 IVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
-..|+++|++.||+|++.+...
T Consensus 13 G~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 13 GSALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred HHHHHHHHHhCCCeEEEecCCC
Confidence 3678999999999999997653
No 337
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=26.80 E-value=1.6e+02 Score=26.14 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=33.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC-C-CeEEEEeCCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATR-G-VKASVITTPAN 46 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~r-G-h~Vt~~t~~~~ 46 (367)
..++|+...|.|=..-...||..++.+ | +.|.+++.+..
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 356677778889999999999999987 6 99999998754
No 338
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.71 E-value=1.3e+02 Score=30.00 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=38.5
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEecCC
Q 041444 284 QPNSVVYICFGSLANFTSAQLMEIATGLEASGRNFIWVVRKNK 326 (367)
Q Consensus 284 ~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~~~~~lW~~~~~~ 326 (367)
|++-|||-+|--...++++.++.-++-|++-+..++|.++.+.
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa 798 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPA 798 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccc
Confidence 4577999999988899999999999999999999999998763
No 339
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=26.67 E-value=1.1e+02 Score=26.72 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=31.4
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+...|.+--.|+.|--.-+-.|+++|.++|++|-++..++
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDP 67 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDP 67 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-G
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECC
Confidence 3456789999999999999999999999999999988664
No 340
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=26.60 E-value=1.4e+02 Score=24.18 Aligned_cols=39 Identities=28% Similarity=0.418 Sum_probs=27.8
Q ss_pred HHHHHHhhhCCCCEEEecCCCc---cHHHHHHHhCCCeEEEe
Q 041444 109 EPLEQLLRDHKPDCLVADIFFP---WATDAAAKFGIPRLVFH 147 (367)
Q Consensus 109 ~~l~~~l~~~~~D~vi~D~~~~---~~~~~A~~lgiP~v~~~ 147 (367)
..+.+++++.+||+|+.-.... .+..+|.+||.|++.=+
T Consensus 81 ~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv 122 (181)
T cd01985 81 KALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISDV 122 (181)
T ss_pred HHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcceeE
Confidence 3445555666799999775443 35679999999988743
No 341
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=26.56 E-value=1.6e+02 Score=22.22 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=24.6
Q ss_pred EEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 11 FFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 11 l~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+++..+..+.-.-+..+++.|+++|+.|..+..
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~ 34 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDY 34 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 344444455677789999999999999887754
No 342
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.41 E-value=1.3e+02 Score=28.66 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=20.7
Q ss_pred HHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEE
Q 041444 112 EQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (367)
Q Consensus 112 ~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 146 (367)
++.++..++|++|... ....+|+++|+|++.+
T Consensus 370 ~~~i~~~~pDliiG~s---~~~~~a~~~gip~v~~ 401 (435)
T cd01974 370 RSLLFTEPVDLLIGNT---YGKYIARDTDIPLVRF 401 (435)
T ss_pred HHHHhhcCCCEEEECc---cHHHHHHHhCCCEEEe
Confidence 3344445677777654 3567788888887654
No 343
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.41 E-value=1.2e+02 Score=26.21 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCeEEEEe
Q 041444 24 IVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t 42 (367)
-.++|++|+++|++|.++.
T Consensus 22 G~aia~~la~~G~~v~~~~ 40 (257)
T PRK08594 22 AWGIARSLHNAGAKLVFTY 40 (257)
T ss_pred HHHHHHHHHHCCCEEEEec
Confidence 3899999999999998763
No 344
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.40 E-value=2.3e+02 Score=23.00 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=29.0
Q ss_pred HHhhhhcCCCCCcEEEEecCCCCCC---C------------H----HHHHHHHHHHHhCCCcEEEEEe
Q 041444 275 ECLKWLNSKQPNSVVYICFGSLANF---T------------S----AQLMEIATGLEASGRNFIWVVR 323 (367)
Q Consensus 275 ~l~~wLd~~~~~~vIyvsfGS~~~~---~------------~----~~~~~~~~al~~~~~~~lW~~~ 323 (367)
.+.+++...++ -+|++++|+.-.. . . +.++++++.+.+.+.+++|.-.
T Consensus 50 ~~~~~l~~~~p-d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili~~ 116 (200)
T cd01829 50 KLKELIAEEKP-DVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWVGL 116 (200)
T ss_pred HHHHHHhcCCC-CEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 45556555433 4999999997521 1 1 2234555556666778888643
No 345
>CHL00067 rps2 ribosomal protein S2
Probab=26.32 E-value=57 Score=27.94 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=25.2
Q ss_pred CCCCEEE-ecCCCc-cHHHHHHHhCCCeEEEecchh
Q 041444 118 HKPDCLV-ADIFFP-WATDAAAKFGIPRLVFHGTSF 151 (367)
Q Consensus 118 ~~~D~vi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 151 (367)
..||+|| .|+-.- .+..-|.++|||+|.++-+..
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCC
Confidence 3588866 566544 577789999999999876643
No 346
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=26.25 E-value=1.1e+02 Score=28.67 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=31.7
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.++.||++.-.++. ...=...+.++|.++|++|.++.+...
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A 44 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAA 44 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhH
Confidence 34567777766664 555778999999999999999888754
No 347
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=26.22 E-value=1.1e+02 Score=29.84 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=20.2
Q ss_pred HHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEE
Q 041444 113 QLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 146 (367)
+++++.++|++|... .+..+|+++|+|.+-+
T Consensus 431 ~~l~~~~~DlliG~s---~~k~~a~~~giPlir~ 461 (515)
T TIGR01286 431 SLVFTEPVDFLIGNS---YGKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHhhcCCCEEEECc---hHHHHHHHcCCCEEEe
Confidence 333445677777654 3567788888887764
No 348
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=26.20 E-value=2.4e+02 Score=19.92 Aligned_cols=38 Identities=13% Similarity=0.070 Sum_probs=23.5
Q ss_pred cEEEEecCCCCC-CCHHHHHHHHHHHHhC--CCcEEEEEec
Q 041444 287 SVVYICFGSLAN-FTSAQLMEIATGLEAS--GRNFIWVVRK 324 (367)
Q Consensus 287 ~vIyvsfGS~~~-~~~~~~~~~~~al~~~--~~~~lW~~~~ 324 (367)
++|+++.||-.. ...+.++.+++.+++. ...+.+.+..
T Consensus 1 ~lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~ 41 (101)
T cd03409 1 GLLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQS 41 (101)
T ss_pred CEEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEEC
Confidence 368888888764 4456677777777653 2345555543
No 349
>PRK04148 hypothetical protein; Provisional
Probab=26.02 E-value=70 Score=24.79 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
..+++.+..+ .| ..+|..|+++||+|+.+=..
T Consensus 17 ~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 17 NKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred CCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 3567777766 33 34688899999999976543
No 350
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=26.01 E-value=1.9e+02 Score=23.04 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=31.9
Q ss_pred HhhHHHHHHHhhhCCCCEEEecCCCc---c------------HHHHHHHhCCCeEEEecch
Q 041444 105 TKLQEPLEQLLRDHKPDCLVADIFFP---W------------ATDAAAKFGIPRLVFHGTS 150 (367)
Q Consensus 105 ~~~~~~l~~~l~~~~~D~vi~D~~~~---~------------~~~~A~~lgiP~v~~~~~~ 150 (367)
..+.+.+++++++.+||.+..|..++ . ...++.+.|+|+.-+.+.-
T Consensus 43 ~~I~~~l~~~i~~y~P~~~aiE~~F~~~N~~sa~~lg~arGvilla~~~~~ipv~Ey~P~~ 103 (156)
T TIGR00228 43 KLIYAGVTEIITQFQPNYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQ 103 (156)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeHHhhccCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 34567888999999999999885332 1 1234667788888776553
No 351
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=25.95 E-value=82 Score=28.37 Aligned_cols=37 Identities=8% Similarity=0.132 Sum_probs=34.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~r--Gh~Vt~~t~~~ 45 (367)
||+++-..+.|.+.-..++.+.|.++ +.+||+++...
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~ 40 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEG 40 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHH
Confidence 79999999999999999999999997 99999999764
No 352
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=25.91 E-value=1.9e+02 Score=23.47 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=32.3
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.+.-+.++...+.|=..-+..|..+|..+|++|-++-.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 345567788888999999999999999999999876654
No 353
>PRK08181 transposase; Validated
Probab=25.83 E-value=1.3e+02 Score=26.46 Aligned_cols=34 Identities=9% Similarity=0.107 Sum_probs=19.7
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
.|+++..+|.|=..-..+++.++.++|+.|.|++
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 4555555555555555566666666666665554
No 354
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=25.66 E-value=1.4e+02 Score=20.73 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=29.7
Q ss_pred EEEEEcCCCcccHHHH-HHHHHHHHhCCCeEEEEeCC
Q 041444 9 HVFFFPFMAHGHMIPI-VDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~-l~La~~L~~rGh~Vt~~t~~ 44 (367)
||++++..|.|+-.-+ ..+=+.+.++|.+++.....
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEec
Confidence 6889999999888888 88888888999887766544
No 355
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=25.59 E-value=1e+02 Score=25.70 Aligned_cols=34 Identities=15% Similarity=-0.009 Sum_probs=25.3
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+..+|+++-.+..| ...++.|.+.|++||++++.
T Consensus 9 ~~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCC
Confidence 34577777654433 67789999999999999864
No 356
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=25.58 E-value=2.5e+02 Score=22.22 Aligned_cols=23 Identities=13% Similarity=0.426 Sum_probs=18.2
Q ss_pred HhhHHHHHHHhhhCCCCEEEecC
Q 041444 105 TKLQEPLEQLLRDHKPDCLVADI 127 (367)
Q Consensus 105 ~~~~~~l~~~l~~~~~D~vi~D~ 127 (367)
..+...+++++...+||.++.|-
T Consensus 45 ~~I~~~l~~~i~~~~Pd~vaiE~ 67 (154)
T cd00529 45 KTIYDGLNEVIDQFQPDVVAIER 67 (154)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEE
Confidence 34566788888888999999996
No 357
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=25.56 E-value=1.9e+02 Score=25.68 Aligned_cols=40 Identities=8% Similarity=0.122 Sum_probs=34.3
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
++.-|+++...|.|-..-+..|...|.+++....++.-++
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDP 57 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDP 57 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCH
Confidence 4567889999999999999999999999988877777664
No 358
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=25.56 E-value=1.2e+02 Score=26.25 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=31.8
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 10 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 10 vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
+++..-+|.|-......+|..++++|++|-++..+..
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 3455577889999999999999999999999998764
No 359
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=25.56 E-value=1.2e+02 Score=28.64 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=22.8
Q ss_pred hhhCCCCEEEecCCCccHHHHHHHhCCCeEEE
Q 041444 115 LRDHKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (367)
Q Consensus 115 l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 146 (367)
+++.++|++|.. +.+..+|+++|||.+-+
T Consensus 346 ~~~~~pDl~Ig~---s~~~~~a~~~giP~~r~ 374 (416)
T cd01980 346 VEEYRPDLAIGT---TPLVQYAKEKGIPALYY 374 (416)
T ss_pred HhhcCCCEEEeC---ChhhHHHHHhCCCEEEe
Confidence 345689999976 45677999999999774
No 360
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=25.50 E-value=2.1e+02 Score=23.54 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=25.1
Q ss_pred HHHHHhhhCCCCEEEecCCC-c-cHHHHHHHhCCCeEEE
Q 041444 110 PLEQLLRDHKPDCLVADIFF-P-WATDAAAKFGIPRLVF 146 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~-~-~~~~~A~~lgiP~v~~ 146 (367)
.+.+.++...+|.|+.=..- . -+..+|.++|+|.+..
T Consensus 64 ~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~v 102 (187)
T PRK13810 64 QAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIV 102 (187)
T ss_pred HHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEE
Confidence 34444455679999854333 2 4667899999998875
No 361
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=25.40 E-value=1.6e+02 Score=25.25 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=27.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCe
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVK 37 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~ 37 (367)
+-|+|...|..|-..-..+|.+.|++||+.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 457888899999999999999999999986
No 362
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=25.33 E-value=1.4e+02 Score=24.88 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=26.8
Q ss_pred HHHHHHhhhCCCCEEEecCCC------ccHHHHHHHhCCCeEE
Q 041444 109 EPLEQLLRDHKPDCLVADIFF------PWATDAAAKFGIPRLV 145 (367)
Q Consensus 109 ~~l~~~l~~~~~D~vi~D~~~------~~~~~~A~~lgiP~v~ 145 (367)
..+.+++++..+|+|+.-.-. ..+..+|.+||.|.+.
T Consensus 98 ~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvs 140 (202)
T cd01714 98 KALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQIT 140 (202)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccc
Confidence 345556666679999977544 3467899999999776
No 363
>PRK06242 flavodoxin; Provisional
Probab=25.13 E-value=1.6e+02 Score=22.78 Aligned_cols=49 Identities=12% Similarity=0.040 Sum_probs=29.2
Q ss_pred chHHHhhhhcCCCC-CcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 041444 272 DELECLKWLNSKQP-NSVVYICFGSLANFTSAQLMEIATGLEASGRNFIW 320 (367)
Q Consensus 272 ~~~~l~~wLd~~~~-~~vIyvsfGS~~~~~~~~~~~~~~al~~~~~~~lW 320 (367)
.++.+.+||+..+. .+..++-|||...........+.+.|+..|.+++=
T Consensus 58 ~~~~~~~fl~~~~~~~~k~~~~f~t~g~~~~~~~~~l~~~l~~~g~~~~~ 107 (150)
T PRK06242 58 FHKSLLKLIEKLPPVSGKKAFIFSTSGLPFLKYHKALKKKLKEKGFEIVG 107 (150)
T ss_pred cCHHHHHHHHhhhhhcCCeEEEEECCCCCcchHHHHHHHHHHHCCCEEEE
Confidence 45556777765322 23445556665544444467777788888887763
No 364
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=25.07 E-value=2.2e+02 Score=20.40 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=26.7
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+..+|++++..|.|=-.-...+-+.+.++|.++.+...
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~ 39 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAG 39 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 45689999988876444445566666778998776554
No 365
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.04 E-value=1.6e+02 Score=24.77 Aligned_cols=35 Identities=14% Similarity=-0.084 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+..+|++.. +.|+ --..|+++|+++||+|++++..
T Consensus 5 ~~~~vlItG--asg~--iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 5 MGRVALVTG--AARG--LGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCEEEEeC--CCch--HHHHHHHHHHHCCCeEEEEeCC
Confidence 344666643 3344 4578899999999998775543
No 366
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=24.87 E-value=3.8e+02 Score=21.78 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=28.3
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+..|-+++..+.|=....+.+|-+-+.+|.+|.++-.-
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFl 40 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFL 40 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEe
Confidence 45678999999999999999999999999999988754
No 367
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=24.79 E-value=89 Score=29.15 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 20 HMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 20 H~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
|+..|.+++.+|..+|++|++...+.
T Consensus 51 v~aAMR~Fad~LraeG~~V~Y~~~~~ 76 (505)
T COG3046 51 VFAAMRHFADELRAEGLKVRYERADD 76 (505)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEcCC
Confidence 45789999999999999999998776
No 368
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=24.74 E-value=1.3e+02 Score=25.55 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=25.7
Q ss_pred hhCCCCEEEecCCCccH---HHHHHHhCCCeEEEec
Q 041444 116 RDHKPDCLVADIFFPWA---TDAAAKFGIPRLVFHG 148 (367)
Q Consensus 116 ~~~~~D~vi~D~~~~~~---~~~A~~lgiP~v~~~~ 148 (367)
++.+.|+|+.|++.... ..+++..|+|++...+
T Consensus 175 ~~~gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr~ 210 (221)
T PF07302_consen 175 AEQGADLIVLDCMGYTQEMRDIVQRALGKPVLLSRT 210 (221)
T ss_pred HhcCCCEEEEECCCCCHHHHHHHHHHhCCCEEeHHH
Confidence 44789999999988753 3588889999988433
No 369
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=24.70 E-value=1.5e+02 Score=24.64 Aligned_cols=35 Identities=17% Similarity=0.038 Sum_probs=23.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
...+++-.-..|-...+..+|+.|+++|+.|.+.-
T Consensus 14 ~~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~pD 48 (218)
T PF01738_consen 14 RPAVVVIHDIFGLNPNIRDLADRLAEEGYVVLAPD 48 (218)
T ss_dssp EEEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEEE-
T ss_pred CCEEEEEcCCCCCchHHHHHHHHHHhcCCCEEecc
Confidence 34444445666888889999999999997776643
No 370
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.61 E-value=1.1e+02 Score=27.86 Aligned_cols=40 Identities=8% Similarity=-0.085 Sum_probs=29.8
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
|.+.+...+|+++-.+..| ..+|..++.+||+|+++-...
T Consensus 1 ~~~~~~i~~VaVIGaG~MG-----~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 1 MAVITDIKTFAAIGSGVIG-----SGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCCCCCCCEEEEECcCHHH-----HHHHHHHHhCCCeEEEEeCCH
Confidence 5555555678888766544 467888999999999988654
No 371
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=24.60 E-value=1.6e+02 Score=25.78 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=28.6
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+.||+++.+|+...-. ..++.|.++|.+|.++...
T Consensus 2 ~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~ 37 (261)
T PRK01175 2 ESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHIN 37 (261)
T ss_pred CCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeec
Confidence 45789999999986553 5578888999999888754
No 372
>PRK06526 transposase; Provisional
Probab=24.50 E-value=87 Score=27.28 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=28.2
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
...|+++..+|.|=..-..+|+.++.++|+.|.|++.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 4567888788888887888888888888888766543
No 373
>PRK12744 short chain dehydrogenase; Provisional
Probab=24.48 E-value=1.6e+02 Score=25.21 Aligned_cols=31 Identities=26% Similarity=0.144 Sum_probs=21.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
+.++++..+.| --.++|+.|+++|++|.++.
T Consensus 9 k~vlItGa~~g---IG~~~a~~l~~~G~~vv~i~ 39 (257)
T PRK12744 9 KVVLIAGGAKN---LGGLIARDLAAQGAKAVAIH 39 (257)
T ss_pred cEEEEECCCch---HHHHHHHHHHHCCCcEEEEe
Confidence 44444444332 55779999999999976665
No 374
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=24.45 E-value=2.1e+02 Score=23.26 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=32.5
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
++.-|.++...+.|=..-.+.+|-+.+.+|++|.++-
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQ 40 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQ 40 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3567889999999999999999999999999997653
No 375
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=24.28 E-value=89 Score=28.37 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=25.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.||+|+..+..| ..+|..|+++||+|+++.-.
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 468888766655 46788999999999998753
No 376
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=24.18 E-value=1.8e+02 Score=24.22 Aligned_cols=36 Identities=8% Similarity=0.079 Sum_probs=21.5
Q ss_pred HhhhCCCCEEEecC----CCccHHHHHHHh-----CCCeEEEecc
Q 041444 114 LLRDHKPDCLVADI----FFPWATDAAAKF-----GIPRLVFHGT 149 (367)
Q Consensus 114 ~l~~~~~D~vi~D~----~~~~~~~~A~~l-----giP~v~~~~~ 149 (367)
.+...+|||||.|. -...+..+.+.+ ++++++++..
T Consensus 42 ~~~~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 42 ACDSLRPSVVFINEDCFIHDASNSQRIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred HHhccCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCeEEEEECC
Confidence 44556899999993 233444554433 3566776544
No 377
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=23.96 E-value=1.1e+02 Score=26.45 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=24.7
Q ss_pred CCCEEE-ecCCCc-cHHHHHHHhCCCeEEEecchh
Q 041444 119 KPDCLV-ADIFFP-WATDAAAKFGIPRLVFHGTSF 151 (367)
Q Consensus 119 ~~D~vi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 151 (367)
.||+|| +|+..- -+..-|.++|||+|.++-+..
T Consensus 118 ~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTds 152 (249)
T PTZ00254 118 EPRLLIVTDPRTDHQAIREASYVNIPVIALCDTDS 152 (249)
T ss_pred CCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCCC
Confidence 577655 787554 467789999999999876643
No 378
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=23.91 E-value=1.9e+02 Score=26.31 Aligned_cols=39 Identities=10% Similarity=0.218 Sum_probs=32.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
..|++..-++.|=..-...||..|+++|++|.++-.+..
T Consensus 32 ~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~ 70 (329)
T cd02033 32 QIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPK 70 (329)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeec
Confidence 446677788889999999999999999999998866543
No 379
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=23.89 E-value=61 Score=28.54 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=16.4
Q ss_pred HHHHHHHhCCCeEEEEeCC
Q 041444 26 DMAKLFATRGVKASVITTP 44 (367)
Q Consensus 26 ~La~~L~~rGh~Vt~~t~~ 44 (367)
.+|..|++.||+||++.-.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~ 23 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARG 23 (293)
T ss_pred HHHHHHHhCCCcEEEEecH
Confidence 4788999999999999854
No 380
>PRK09739 hypothetical protein; Provisional
Probab=23.79 E-value=2.1e+02 Score=23.57 Aligned_cols=37 Identities=8% Similarity=0.157 Sum_probs=22.3
Q ss_pred ccEEEEE-cCCCc-ccH-HHHHHHHHHHHhCCCeEEEEeC
Q 041444 7 QLHVFFF-PFMAH-GHM-IPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 7 ~~~vl~~-p~p~~-gH~-~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.||+++ .+|-. |.. .-...++++|.++||+|+++--
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 4456644 44543 322 2355566777888999997753
No 381
>PRK12377 putative replication protein; Provisional
Probab=23.78 E-value=1.5e+02 Score=25.78 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=23.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.+++...+|.|=..-..+++++|.++|+.|.+++.
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 46666666666666667777777777776666554
No 382
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=23.75 E-value=1.4e+02 Score=28.09 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=30.2
Q ss_pred cEEE-EEc-CCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 8 LHVF-FFP-FMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 8 ~~vl-~~p-~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.+|. |.. =+|.|=......||..|+.+|++|-++=.++.
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ 161 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ 161 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 3444 443 36779999999999999999999988865543
No 383
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=23.71 E-value=1.8e+02 Score=26.84 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=33.1
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
..-|.|+..++.|=..-+..|.++|.++|++|-++-..
T Consensus 205 ~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~ 242 (366)
T PRK14489 205 PPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHS 242 (366)
T ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEEC
Confidence 44577888899999999999999999999999888753
No 384
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=23.69 E-value=1.6e+02 Score=21.07 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=16.3
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHh
Q 041444 287 SVVYICFGSLANFTSAQLMEIATGLEA 313 (367)
Q Consensus 287 ~vIyvsfGS~~~~~~~~~~~~~~al~~ 313 (367)
++|+++.||...-..+.+.++++.+++
T Consensus 1 ~ivlv~hGS~~~~~~~~~~~l~~~l~~ 27 (101)
T cd03416 1 ALLLVGHGSRDPRAAEALEALAERLRE 27 (101)
T ss_pred CEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 367777777654333456666666654
No 385
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=23.67 E-value=1.5e+02 Score=25.40 Aligned_cols=34 Identities=15% Similarity=-0.098 Sum_probs=23.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+.++++..+ |. --..++++|+++|++|.++...
T Consensus 15 ~k~vlItGas-~g--IG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 15 GKVAIVTGGN-TG--LGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCEEEEeCCC-ch--HHHHHHHHHHHCCCEEEEEeCC
Confidence 3555555443 43 3488999999999999887654
No 386
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=23.65 E-value=94 Score=27.62 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=23.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+|+++-.++.| ..+|..|++.||+|+++..
T Consensus 2 kI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 56777555544 4678889999999999876
No 387
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=23.63 E-value=94 Score=26.60 Aligned_cols=24 Identities=8% Similarity=0.036 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 22 IPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 22 ~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
-+++.+.+.|.++|+.|.++|.-.
T Consensus 123 p~al~l~~~l~~~G~~Vf~lTGR~ 146 (229)
T TIGR01675 123 PEGLKLYQKIIELGIKIFLLSGRW 146 (229)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCC
Confidence 468899999999999999999764
No 388
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=23.62 E-value=1.3e+02 Score=26.12 Aligned_cols=38 Identities=34% Similarity=0.445 Sum_probs=28.8
Q ss_pred HHHHHHhhhCCCCEEE--ecCCCc----cHHHHHHHhCCCeEEE
Q 041444 109 EPLEQLLRDHKPDCLV--ADIFFP----WATDAAAKFGIPRLVF 146 (367)
Q Consensus 109 ~~l~~~l~~~~~D~vi--~D~~~~----~~~~~A~~lgiP~v~~ 146 (367)
+.+.+++++.++|+|| +.+|+. -+..+|+..|||++-|
T Consensus 56 e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 56 EGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred HHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 4577788888999988 445553 2457899999999986
No 389
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=23.59 E-value=3.7e+02 Score=23.64 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=32.0
Q ss_pred ccEEEEEc-CCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 7 QLHVFFFP-FMAHGHMIPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 7 ~~~vl~~p-~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
+.+=.|+. =+|.|-..---.||-+|++-++.|-++++++.+
T Consensus 18 slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAH 59 (323)
T KOG2825|consen 18 SLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAH 59 (323)
T ss_pred eeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCccc
Confidence 34433443 345688899999999999999999999998765
No 390
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=23.47 E-value=3.3e+02 Score=25.82 Aligned_cols=84 Identities=18% Similarity=0.229 Sum_probs=51.2
Q ss_pred EEecccccccHHHHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHH---hhhhcCC--CCCcEEEEecCCC
Q 041444 222 VAVNSFYELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELEC---LKWLNSK--QPNSVVYICFGSL 296 (367)
Q Consensus 222 ~l~nt~~~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l---~~wLd~~--~~~~vIyvsfGS~ 296 (367)
++-.--+.+++.-+++++...+|-=+-|||-.. ++++ .+-||-. +.+=.+..=||.-
T Consensus 259 WIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~------------------p~~l~~L~~~LnP~~epGRlTLI~RmGa~ 320 (443)
T TIGR01358 259 WIGERTRQLDGAHVEFLRGVRNPIGIKVGPSMT------------------PDELLRLIERLNPENEPGRLTLISRMGAD 320 (443)
T ss_pred ccccccCCCCchHHHHHhcCCCCeeEEECCCCC------------------HHHHHHHHHHhCCCCCCceEEEEeccCch
Confidence 344555567777777777766666677888542 3333 3344433 2232344445542
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEecC
Q 041444 297 ANFTSAQLMEIATGLEASGRNFIWVVRKN 325 (367)
Q Consensus 297 ~~~~~~~~~~~~~al~~~~~~~lW~~~~~ 325 (367)
.. .+.+-.+++|..+.|.+|+|..++-
T Consensus 321 kV--~~~LP~li~aV~~~G~~VvW~cDPM 347 (443)
T TIGR01358 321 KI--ADKLPPLLRAVKAAGRRVVWVCDPM 347 (443)
T ss_pred HH--HHhHHHHHHHHHHcCCceEEeecCC
Confidence 11 2456678999999999999998753
No 391
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=23.44 E-value=1.8e+02 Score=29.12 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=32.2
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.-|.|+.+.+.|=..-+..|+.+|.+||++|-++=.
T Consensus 10 ~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh 46 (597)
T PRK14491 10 IPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKH 46 (597)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence 3446688889999999999999999999999988775
No 392
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.41 E-value=1.4e+02 Score=25.63 Aligned_cols=39 Identities=28% Similarity=0.312 Sum_probs=24.9
Q ss_pred HHHHHhhhCCCCEEEecCCCcc--HHH-HHHHhCCCeEEEecc
Q 041444 110 PLEQLLRDHKPDCLVADIFFPW--ATD-AAAKFGIPRLVFHGT 149 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~~~--~~~-~A~~lgiP~v~~~~~ 149 (367)
.+++++ ..+||+||....... ... +.+.+|+|++.+...
T Consensus 66 n~E~i~-~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 66 NYEKIA-ALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CHHHHH-hcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 345444 468999998755433 233 444589999887643
No 393
>PRK10867 signal recognition particle protein; Provisional
Probab=23.28 E-value=2e+02 Score=27.33 Aligned_cols=41 Identities=10% Similarity=0.158 Sum_probs=35.3
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCCCc
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTPANA 47 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~r-Gh~Vt~~t~~~~~ 47 (367)
+.-|+++..+|.|=..-...||..|+++ |+.|.+++.+...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 3456788888999999999999999999 9999999988654
No 394
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=23.20 E-value=75 Score=28.59 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 041444 24 IVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t~~ 44 (367)
-+.+|.+|+++|++|+++-..
T Consensus 11 G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 11 GLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCeEEEEeec
Confidence 367899999999999999765
No 395
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=23.16 E-value=2.5e+02 Score=24.28 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=32.3
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
+.+++.-.=+|.|=......||..|+++|++|.++-.++.
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~ 42 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPV 42 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 3445555667889999999999999999999999877654
No 396
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.12 E-value=1.8e+02 Score=22.25 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=21.8
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 19 GHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 19 gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
-.+-..+-++.+|.++|.+||+..++
T Consensus 16 ~qissaiYls~klkkkgf~v~Vaate 41 (148)
T COG4081 16 PQISSAIYLSHKLKKKGFDVTVAATE 41 (148)
T ss_pred ccchHHHHHHHHhhccCccEEEecCH
Confidence 44555778899999999999998876
No 397
>PRK07952 DNA replication protein DnaC; Validated
Probab=23.11 E-value=1.6e+02 Score=25.41 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=27.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.+++...+|.|=..-..+++.+|.++|+.|.+++.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 46777777888888888888888888888877754
No 398
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=23.08 E-value=1.8e+02 Score=24.44 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=31.0
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.+.+|.+=..||.|-..-|+.=|++|.++|.+|.+.-.+..
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 35688888899999999999999999999999998766543
No 399
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.87 E-value=1.5e+02 Score=25.35 Aligned_cols=33 Identities=9% Similarity=-0.082 Sum_probs=22.6
Q ss_pred cEEEEEcCCCc-ccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 8 LHVFFFPFMAH-GHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 8 ~~vl~~p~p~~-gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
.|+++++..+. +- --.++|++|+++|++|.+..
T Consensus 7 ~k~~lItGas~~~g--IG~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 7 GKKIVVMGVANKRS--IAWGCAQAIKDQGATVIYTY 40 (252)
T ss_pred CCEEEEeCCCCCCc--hHHHHHHHHHHCCCEEEEec
Confidence 45566665541 11 33899999999999988753
No 400
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=22.72 E-value=2.3e+02 Score=26.61 Aligned_cols=40 Identities=13% Similarity=0.103 Sum_probs=33.6
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
+..++++...|.|=..-+..||..+..+|++|.+++.+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 3345677777889999999999999999999999998765
No 401
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=22.70 E-value=1.8e+02 Score=25.41 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=26.5
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+++.|+|+...+.+.. -...++..|.++|++|..+..
T Consensus 17 ~~p~vvliHG~~~~~~-~w~~~~~~L~~~g~~vi~~dl 53 (273)
T PLN02211 17 QPPHFVLIHGISGGSW-CWYKIRCLMENSGYKVTCIDL 53 (273)
T ss_pred CCCeEEEECCCCCCcC-cHHHHHHHHHhCCCEEEEecc
Confidence 3457888877665443 457888889999999876554
No 402
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=22.68 E-value=1.3e+02 Score=28.76 Aligned_cols=33 Identities=36% Similarity=0.363 Sum_probs=21.3
Q ss_pred HHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEE
Q 041444 111 LEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (367)
Q Consensus 111 l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 146 (367)
+++.+++.++|++|.. .....+|+++|+|++.+
T Consensus 387 ~~~~i~~~~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 387 LLKLLLEYKADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHhhcCCCEEEEc---cchHHHHHhcCCCEEEc
Confidence 3444455678888764 33456777888887764
No 403
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=22.60 E-value=1.3e+02 Score=28.49 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=24.7
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
..+|+|+-.+..| +.+|..|+++||+|+.+-..
T Consensus 3 ~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 3 FETISVIGLGYIG-----LPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred ccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeCC
Confidence 3578887554433 57899999999999988654
No 404
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=22.57 E-value=1.2e+02 Score=23.27 Aligned_cols=24 Identities=4% Similarity=0.245 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 23 PIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 23 p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
......++|.++||+|+++|.-..
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~ 51 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNM 51 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCc
Confidence 456667777899999999998654
No 405
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=22.56 E-value=1.5e+02 Score=25.75 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=25.2
Q ss_pred HHHhhhCCCCEEEecCCCcc-H----HHHHHHhCCCeEEE
Q 041444 112 EQLLRDHKPDCLVADIFFPW-A----TDAAAKFGIPRLVF 146 (367)
Q Consensus 112 ~~~l~~~~~D~vi~D~~~~~-~----~~~A~~lgiP~v~~ 146 (367)
..+++.++.|+||+=--... + ...|.++|||+|.+
T Consensus 189 ~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 189 KALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred HHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 45666789999997643322 2 46899999999985
No 406
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=22.52 E-value=4.1e+02 Score=21.35 Aligned_cols=85 Identities=12% Similarity=0.036 Sum_probs=46.7
Q ss_pred ceEEecccccccHHHHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCC
Q 041444 220 YGVAVNSFYELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANF 299 (367)
Q Consensus 220 ~~~l~nt~~~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~ 299 (367)
.-.++.+..+.-......+++.+ |++.-+|-.+..-.. ...+++.+.++... ..+|+|++|+--+
T Consensus 50 ~ifllG~~~~~~~~~~~~l~~~y-P~l~ivg~~~g~f~~------------~~~~~i~~~I~~~~-pdiv~vglG~PkQ- 114 (172)
T PF03808_consen 50 RIFLLGGSEEVLEKAAANLRRRY-PGLRIVGYHHGYFDE------------EEEEAIINRINASG-PDIVFVGLGAPKQ- 114 (172)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCCh------------hhHHHHHHHHHHcC-CCEEEEECCCCHH-
Confidence 34455555554444555666655 667666654332211 14667788887754 3599999987421
Q ss_pred CHHHHHHHHHH-HHhCCCcEEEEEec
Q 041444 300 TSAQLMEIATG-LEASGRNFIWVVRK 324 (367)
Q Consensus 300 ~~~~~~~~~~a-l~~~~~~~lW~~~~ 324 (367)
+.++.. -..++.++.-.++.
T Consensus 115 -----E~~~~~~~~~l~~~v~i~vG~ 135 (172)
T PF03808_consen 115 -----ERWIARHRQRLPAGVIIGVGG 135 (172)
T ss_pred -----HHHHHHHHHHCCCCEEEEECc
Confidence 233333 33456664444443
No 407
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=22.48 E-value=2e+02 Score=25.57 Aligned_cols=37 Identities=5% Similarity=-0.034 Sum_probs=27.1
Q ss_pred ccEEEEEcCCCcc-c---HHHHHHHHHHHHhCCCeEEEEeC
Q 041444 7 QLHVFFFPFMAHG-H---MIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~g-H---~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.||+++..+..+ | +....++++.|.+.||+|.++..
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 6688877654322 2 45677899999999999988754
No 408
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=22.43 E-value=2e+02 Score=22.83 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=30.2
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
..+|+++- -+|-+..-.++..|+.-|.+|+++++..
T Consensus 2 gl~i~~vG---D~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 2 GLKIAYVG---DGHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp TEEEEEES---STTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred CCEEEEEC---CCCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 45677776 2788999999999999999999999874
No 409
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=22.42 E-value=87 Score=29.16 Aligned_cols=35 Identities=29% Similarity=0.506 Sum_probs=25.8
Q ss_pred EEEEcCC-C--cccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 10 VFFFPFM-A--HGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 10 vl~~p~p-~--~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+.+=|.+ . -||+.|+..+ ++|.+.||+|.++....
T Consensus 35 ~G~dPTg~~lHlGh~v~l~~l-~~lq~~G~~~~iligd~ 72 (377)
T TIGR00234 35 VGFDPTAPSLHLGHLVPLLKL-RDFQQAGHEVIVLLGDA 72 (377)
T ss_pred EeeCCCCCCccHHHHHHHHHH-HHHHHCCCcEEEEEecc
Confidence 4455655 2 3999987665 68999999999887653
No 410
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=22.37 E-value=1.1e+02 Score=26.94 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=20.3
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 18 HGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 18 ~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.|.+- ..|+++|.++||+|..+...
T Consensus 9 tGfiG--~~l~~~L~~~g~~V~~~~r~ 33 (314)
T COG0451 9 AGFIG--SHLVERLLAAGHDVRGLDRL 33 (314)
T ss_pred cccHH--HHHHHHHHhCCCeEEEEeCC
Confidence 44444 89999999999999988854
No 411
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=22.36 E-value=1.8e+02 Score=25.18 Aligned_cols=40 Identities=10% Similarity=-0.045 Sum_probs=33.8
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCCCcch
Q 041444 10 VFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTPANAPY 49 (367)
Q Consensus 10 vl~~p~p~~gH~~p~l~La~~L~~r-Gh~Vt~~t~~~~~~~ 49 (367)
+++...|+.|-..-++.+|..++.+ |+.|.+++.+-..+.
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~ 62 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEE 62 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHH
Confidence 5677789999999999999999998 699999999865443
No 412
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.35 E-value=74 Score=29.34 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCCC
Q 041444 24 IVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
..-|.++|+++||+|++++..-
T Consensus 343 a~~l~~~m~~~Gh~V~~l~G~l 364 (477)
T KOG0332|consen 343 AMWLYEEMRAEGHQVSLLHGDL 364 (477)
T ss_pred HHHHHHHHHhcCceeEEeeccc
Confidence 4568899999999999998763
No 413
>PRK06921 hypothetical protein; Provisional
Probab=22.33 E-value=1.8e+02 Score=25.49 Aligned_cols=37 Identities=11% Similarity=0.093 Sum_probs=28.5
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~r-Gh~Vt~~t~ 43 (367)
...++++..+|.|=..-+.+++++|.++ |+.|.+++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 3457788888888777778888888887 888877764
No 414
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=22.29 E-value=86 Score=27.18 Aligned_cols=33 Identities=18% Similarity=0.107 Sum_probs=26.5
Q ss_pred cEEEEEcCCCc--ccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAH--GHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~--gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.+|++++.+|- |. -+.+|+.|+++|++|+++..
T Consensus 61 ~~V~VlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGNNGGD---GLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCCCchh---HHHHHHHHHHCCCeEEEEEc
Confidence 57999988773 33 46788999999999999874
No 415
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=22.28 E-value=2.2e+02 Score=26.03 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=35.7
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
...|.+...||.|=..-+..|+..|.++|++|.+++.++.
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~ 95 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS 95 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence 4467899999999999999999999999999999998764
No 416
>PRK12828 short chain dehydrogenase; Provisional
Probab=22.21 E-value=2.1e+02 Score=23.85 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=24.2
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 3 SKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 3 ~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
...+..++++.- +.|.+ -..++++|+++|++|.+++-
T Consensus 3 ~~~~~k~vlItG--atg~i--G~~la~~l~~~G~~v~~~~r 39 (239)
T PRK12828 3 HSLQGKVVAITG--GFGGL--GRATAAWLAARGARVALIGR 39 (239)
T ss_pred CCCCCCEEEEEC--CCCcH--hHHHHHHHHHCCCeEEEEeC
Confidence 333444555533 33544 47899999999999877764
No 417
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=22.16 E-value=2e+02 Score=24.61 Aligned_cols=32 Identities=9% Similarity=0.017 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
+.+|+++...+ .--..++++|+++||+|+.++
T Consensus 17 ~~~ilItGasG----~iG~~l~~~L~~~g~~V~~~~ 48 (251)
T PLN00141 17 TKTVFVAGATG----RTGKRIVEQLLAKGFAVKAGV 48 (251)
T ss_pred CCeEEEECCCc----HHHHHHHHHHHhCCCEEEEEe
Confidence 45677766433 345678899999999998765
No 418
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=22.15 E-value=2e+02 Score=22.29 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=26.9
Q ss_pred EEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 12 FFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 12 ~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
+-+.++.|=..-...||..|+++|++|-++-.....
T Consensus 6 ~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~ 41 (157)
T PF13614_consen 6 WSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFS 41 (157)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS
T ss_pred ECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCC
Confidence 334777898999999999999999998887766443
No 419
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=22.08 E-value=1.9e+02 Score=24.70 Aligned_cols=38 Identities=18% Similarity=0.417 Sum_probs=25.4
Q ss_pred HHHhhhCCCCEEEecCCCc--cHHHHHHHhC------CCeEEEecch
Q 041444 112 EQLLRDHKPDCLVADIFFP--WATDAAAKFG------IPRLVFHGTS 150 (367)
Q Consensus 112 ~~~l~~~~~D~vi~D~~~~--~~~~~A~~lg------iP~v~~~~~~ 150 (367)
.+.++.. ||+||.|.+.+ .|..+++++. .|++.++...
T Consensus 37 ~~~~~~~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~Lta~~ 82 (229)
T COG0745 37 LEAAREQ-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIVLTARD 82 (229)
T ss_pred HHHHhcC-CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEEEECCC
Confidence 3444556 99999999887 3666665544 5677765553
No 420
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.96 E-value=1.1e+02 Score=26.99 Aligned_cols=33 Identities=15% Similarity=0.034 Sum_probs=25.7
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
..+|+++-.+..| ..+|..|+++||+|+++...
T Consensus 3 ~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 3 IKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred ccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCC
Confidence 3578888766655 56788999999999998754
No 421
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=21.95 E-value=1.3e+02 Score=25.33 Aligned_cols=40 Identities=33% Similarity=0.580 Sum_probs=26.2
Q ss_pred HHHHHhhhCCCCEEEecCCC--ccHHHHHHHhCCCeEEEecch
Q 041444 110 PLEQLLRDHKPDCLVADIFF--PWATDAAAKFGIPRLVFHGTS 150 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~--~~~~~~A~~lgiP~v~~~~~~ 150 (367)
.++.++ ..+||+||..... .....-....++|++.+....
T Consensus 52 ~~E~i~-~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 52 NLEAIL-ALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp -HHHHH-HT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred cHHHHH-hCCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 345444 4689999988766 344556667899999987665
No 422
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=21.93 E-value=3.8e+02 Score=24.91 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=22.1
Q ss_pred hhCCCCEEE-ecCCCc--cHHHHHHHhC--CCeEEEecchh
Q 041444 116 RDHKPDCLV-ADIFFP--WATDAAAKFG--IPRLVFHGTSF 151 (367)
Q Consensus 116 ~~~~~D~vi-~D~~~~--~~~~~A~~lg--iP~v~~~~~~~ 151 (367)
...+||++| .|.-.+ -...-.++.| +|.|.+..-+.
T Consensus 82 ~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsV 122 (381)
T COG0763 82 LANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSV 122 (381)
T ss_pred HhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcce
Confidence 347899877 786333 2333455667 89887654443
No 423
>PLN02240 UDP-glucose 4-epimerase
Probab=21.91 E-value=1.6e+02 Score=26.74 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
..+|++. ++.|.+ -.+|+++|+++||+|+++.
T Consensus 5 ~~~vlIt--GatG~i--G~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 5 GRTILVT--GGAGYI--GSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCEEEEE--CCCChH--HHHHHHHHHHCCCEEEEEe
Confidence 3456654 344544 4577899999999999875
No 424
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=21.80 E-value=1.7e+02 Score=21.42 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=25.0
Q ss_pred HHHHHhhhCCCCEEEecCCC---ccHHHHHHHhCCCeEE
Q 041444 110 PLEQLLRDHKPDCLVADIFF---PWATDAAAKFGIPRLV 145 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~---~~~~~~A~~lgiP~v~ 145 (367)
.+.++.++.++|+||..+=. ....+.-++.|||++.
T Consensus 53 ~l~~~a~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 53 ELADFAKENKIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp HHHHHHHHTTESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred HHHHHHHHcCCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 45566677899999988633 3456777788988765
No 425
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=21.73 E-value=2.7e+02 Score=22.89 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=25.0
Q ss_pred HHHHhhhCCCCEEEe-cCCC-ccHHHHHHHhCCCeEEEe
Q 041444 111 LEQLLRDHKPDCLVA-DIFF-PWATDAAAKFGIPRLVFH 147 (367)
Q Consensus 111 l~~~l~~~~~D~vi~-D~~~-~~~~~~A~~lgiP~v~~~ 147 (367)
+.+.+ ..++|+|+. |.-. .++..+|..+++|.+...
T Consensus 44 l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~r 81 (187)
T PRK12560 44 IIKYI-DKDIDKIVTEEDKGAPLATPVSLLSGKPLAMAR 81 (187)
T ss_pred HHHHh-CCCCCEEEEEccccHHHHHHHHHhhCCCEEEec
Confidence 33444 568999994 4433 367789999999987753
No 426
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=21.69 E-value=82 Score=29.33 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=27.0
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+--|++|..+..|+-+-...+|.+||++|+=|..+-..
T Consensus 98 ~~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHr 136 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHR 136 (379)
T ss_dssp S-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccC
Confidence 456789999999999999999999999999988776554
No 427
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=21.62 E-value=2.4e+02 Score=23.31 Aligned_cols=36 Identities=8% Similarity=0.081 Sum_probs=29.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
-+++...||.|-..-+..+.+.+..+|.+|.++++-
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 355668899999999999999999999999998865
No 428
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=21.39 E-value=7.1e+02 Score=23.63 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=33.6
Q ss_pred hHHHHHHHhhhCCCCEEEecCCCc----cHHHHHH---HhCCCeEEEecchhhHH
Q 041444 107 LQEPLEQLLRDHKPDCLVADIFFP----WATDAAA---KFGIPRLVFHGTSFFSL 154 (367)
Q Consensus 107 ~~~~l~~~l~~~~~D~vi~D~~~~----~~~~~A~---~lgiP~v~~~~~~~~~~ 154 (367)
+.+.+.+.+++...|+||.-..|. |+..+++ +.|||+|.+++.-....
T Consensus 324 ~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI~~ 378 (431)
T TIGR01917 324 FAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPIAL 378 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhHHH
Confidence 445566666778999999886553 4555655 46999999887766543
No 429
>PTZ00445 p36-lilke protein; Provisional
Probab=21.34 E-value=1e+02 Score=26.04 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.0
Q ss_pred ccHHH-HHHHHHHHHhCCCeEEEEeCCCC
Q 041444 19 GHMIP-IVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 19 gH~~p-~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
+|+.| +..+.++|.++|..|+++|....
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 56677 88999999999999999997654
No 430
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=21.34 E-value=1e+02 Score=26.20 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=21.1
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 10 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 10 vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
=+++|.-|.||= +..|+++||+|+=+=
T Consensus 40 rvLvPgCG~g~D------~~~La~~G~~VvGvD 66 (218)
T PF05724_consen 40 RVLVPGCGKGYD------MLWLAEQGHDVVGVD 66 (218)
T ss_dssp EEEETTTTTSCH------HHHHHHTTEEEEEEE
T ss_pred eEEEeCCCChHH------HHHHHHCCCeEEEEe
Confidence 366799999986 567889999987553
No 431
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=21.28 E-value=1e+02 Score=27.86 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=34.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPAN 46 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~r--Gh~Vt~~t~~~~ 46 (367)
||+++-..+-|.+.-..++.+.|.+. +.+|++++....
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~ 40 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWC 40 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhh
Confidence 58899999999999999999999986 899999997643
No 432
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=21.12 E-value=1.4e+02 Score=23.91 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=19.7
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 17 AHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 17 ~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+-|++ .+|+.+|.++|.+|.++..+.
T Consensus 114 gD~DF---~~Lv~~lre~G~~V~v~g~~~ 139 (160)
T TIGR00288 114 RDADF---LPVINKAKENGKETIVIGAEP 139 (160)
T ss_pred ccHhH---HHHHHHHHHCCCEEEEEeCCC
Confidence 33554 457788889999999998664
No 433
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.98 E-value=3.2e+02 Score=21.99 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=28.5
Q ss_pred HHhhhhcC--CCCCcEEEEecCCCCC---CCH----HHHHHHHHHHHh--CCCcEEEEE
Q 041444 275 ECLKWLNS--KQPNSVVYICFGSLAN---FTS----AQLMEIATGLEA--SGRNFIWVV 322 (367)
Q Consensus 275 ~l~~wLd~--~~~~~vIyvsfGS~~~---~~~----~~~~~~~~al~~--~~~~~lW~~ 322 (367)
++.+++++ ..+..+|+|.+|+.-. .+. +.++++++.+.+ .+.+++|.-
T Consensus 55 ~~~~~l~~~~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~ 113 (191)
T cd01836 55 DLLRQLAPLPETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVVTA 113 (191)
T ss_pred HHHHHHHhcccCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 34455542 2234599999999752 233 344556666655 456788863
No 434
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=20.87 E-value=1.6e+02 Score=29.32 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=25.7
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
..+++.+-..-|......+++++...|++|++..-.
T Consensus 50 ~~il~~sqtG~a~~~A~~~a~~~~~~g~~~~~~~~~ 85 (587)
T COG0369 50 ITVLYGSQTGNAEGLAEELAKELEAAGLQVLVASLD 85 (587)
T ss_pred eEEEEccCCccHHHHHHHHHHHHHhcCCceeecchh
Confidence 344555555677778888888888888888876654
No 435
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=20.82 E-value=1.4e+02 Score=28.12 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=23.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+|.|+-.+..| +.+|..|+++||+|+++...
T Consensus 2 kI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVG-----LPLAALLADLGHEVTGVDID 32 (411)
T ss_pred EEEEECCCchh-----HHHHHHHHhcCCeEEEEECC
Confidence 56776554444 68899999999999988653
No 436
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=20.81 E-value=1.4e+02 Score=25.91 Aligned_cols=38 Identities=32% Similarity=0.533 Sum_probs=28.5
Q ss_pred HHHHHhhhCCCCEEE--ecCCCc----cHHHHHHHhCCCeEEEe
Q 041444 110 PLEQLLRDHKPDCLV--ADIFFP----WATDAAAKFGIPRLVFH 147 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi--~D~~~~----~~~~~A~~lgiP~v~~~ 147 (367)
.+.+++++.++++|| +.+|+. -+..+|+++|||++-|-
T Consensus 57 ~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 57 GLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred HHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 466777888899988 445653 24578999999999874
No 437
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=20.80 E-value=1.6e+02 Score=28.31 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=30.2
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
..+|++...++.+ ..=...|+++|.++|++|.++.+....
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~ 109 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQ 109 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHH
Confidence 4677776665533 346889999999999999999887543
No 438
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=20.78 E-value=1.9e+02 Score=24.69 Aligned_cols=32 Identities=16% Similarity=0.007 Sum_probs=21.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.++++..+ | .--.+++++|+++|++|+++.-
T Consensus 9 k~vlVtGas-~--gIG~~la~~l~~~G~~v~~~~r 40 (260)
T PRK12823 9 KVVVVTGAA-Q--GIGRGVALRAAAEGARVVLVDR 40 (260)
T ss_pred CEEEEeCCC-c--hHHHHHHHHHHHCCCEEEEEeC
Confidence 444554433 2 2347799999999999987653
No 439
>PRK08309 short chain dehydrogenase; Provisional
Probab=20.66 E-value=1.4e+02 Score=24.29 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCeEEEEeC
Q 041444 25 VDMAKLFATRGVKASVITT 43 (367)
Q Consensus 25 l~La~~L~~rGh~Vt~~t~ 43 (367)
..++++|+++|++|++++-
T Consensus 13 g~la~~L~~~G~~V~v~~R 31 (177)
T PRK08309 13 KRVSLWLCEKGFHVSVIAR 31 (177)
T ss_pred HHHHHHHHHCcCEEEEEEC
Confidence 4699999999999998763
No 440
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=20.66 E-value=1.8e+02 Score=24.94 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=29.5
Q ss_pred CCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 15 FMAHGHMIPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 15 ~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
=+|.|=..-.+.||.+|++||-.|+++=.+++.
T Consensus 10 KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~ 42 (231)
T PF07015_consen 10 KGGAGKTTAAMALASELAARGARVALIDADPNQ 42 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 456799999999999999999999999888765
No 441
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=20.52 E-value=2.3e+02 Score=23.96 Aligned_cols=36 Identities=8% Similarity=-0.003 Sum_probs=24.9
Q ss_pred EEEEEcC-----CCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPF-----MAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~-----p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
||+++.. .+ ....=+..-...|.+.|++|+++++..
T Consensus 3 kVlills~~~~~dG-~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 3 KIAVILSGCGVYDG-SEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred EEEEEEccCCCCCC-EehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5666654 22 234445666788999999999999754
No 442
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=20.46 E-value=2.3e+02 Score=23.50 Aligned_cols=39 Identities=10% Similarity=0.173 Sum_probs=29.8
Q ss_pred ccEEEEEc--CCCcccHHHHHHHHHHHHh-CCCeEEEEeCCC
Q 041444 7 QLHVFFFP--FMAHGHMIPIVDMAKLFAT-RGVKASVITTPA 45 (367)
Q Consensus 7 ~~~vl~~p--~p~~gH~~p~l~La~~L~~-rGh~Vt~~t~~~ 45 (367)
..+++.+. -+|.|=..-...||..|++ +|++|.++-...
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~ 75 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADL 75 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 34444443 5678999999999999997 699999886654
No 443
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=20.36 E-value=1.5e+02 Score=26.84 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=26.0
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
..+|+|+-.+..| ..+|..|+++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 3478888766655 56889999999999998764
No 444
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=20.36 E-value=2.1e+02 Score=21.92 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=28.3
Q ss_pred EEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 11 FFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 11 l~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+|++..+.|=..-.+.|++.|.++|.+|-++=+.
T Consensus 3 ~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~ 36 (134)
T cd03109 3 GFGTGTDIGKTVATAILARALKEKGYRVAPLKPV 36 (134)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4566667788899999999999999999987544
No 445
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=20.34 E-value=2.4e+02 Score=25.53 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=34.9
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
+..++++..+|.|=..-+..||..|+.+|++|.++..+..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 3457788889999999999999999999999999987653
No 446
>PF00920 ILVD_EDD: Dehydratase family; InterPro: IPR000581 Two dehydratases, dihydroxy-acid dehydratase (4.2.1.9 from EC) (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (4.2.1.12 from EC) (gene edd) have been shown to be evolutionary related []. Dihydroxy-acid dehydratase catalyses the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyses the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GP4_B.
Probab=20.25 E-value=1.6e+02 Score=28.58 Aligned_cols=46 Identities=28% Similarity=0.479 Sum_probs=27.9
Q ss_pred hhHHHHHHHhhhCCCCEEE----ecCCCccHHHHHHHhCCCeEEEecchh
Q 041444 106 KLQEPLEQLLRDHKPDCLV----ADIFFPWATDAAAKFGIPRLVFHGTSF 151 (367)
Q Consensus 106 ~~~~~l~~~l~~~~~D~vi----~D~~~~~~~~~A~~lgiP~v~~~~~~~ 151 (367)
.+...++..++...+|-+| +|-..+..+..|.++|+|.|++...+.
T Consensus 66 lIAd~iE~~~~a~~~Dg~V~l~gCDK~~Pg~lMaaarlniPsi~v~gGpm 115 (521)
T PF00920_consen 66 LIADSIEEMVRAHPFDGMVLLGGCDKIVPGMLMAAARLNIPSIFVYGGPM 115 (521)
T ss_dssp HHHHHHHHHHTT---SEEEEE--STTCCHHHHHHHHTTTS-EEE------
T ss_pred HHHHHHHHHHhCCCcceEEEeccCCCccHHHHHHHHHcCCCEEEEecCCC
Confidence 3456788888888999887 455666677788899999999765543
No 447
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=20.20 E-value=2.7e+02 Score=20.40 Aligned_cols=35 Identities=9% Similarity=0.168 Sum_probs=28.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
.+|++++..|.|--.-....-+...++|-++++-.
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A 36 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEA 36 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEE
Confidence 57999999998888777777788888888887644
No 448
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=20.20 E-value=5.1e+02 Score=21.54 Aligned_cols=34 Identities=6% Similarity=0.082 Sum_probs=22.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEEEeCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRG--VKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rG--h~Vt~~t~~ 44 (367)
.||+++.+.. |+ .+.+|.+++.+.+ ++|.++.+.
T Consensus 2 ~ki~vl~sg~-gs--~~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLASGN-GS--NLQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEcCC-Ch--hHHHHHHHHHcCCCCcEEEEEEec
Confidence 5788888766 33 3446667777764 677765554
No 449
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=20.19 E-value=2e+02 Score=28.24 Aligned_cols=36 Identities=14% Similarity=-0.119 Sum_probs=26.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+|++++.+|- .=-=-+.+|+.|.++|++|+++...
T Consensus 136 ~~VlVlcGpGN-NGGDGLVaAR~L~~~G~~V~V~~~~ 171 (544)
T PLN02918 136 SRVLAICGPGN-NGGDGLVAARHLHHFGYKPFVCYPK 171 (544)
T ss_pred CEEEEEECCCc-CHHHHHHHHHHHHHCCCceEEEEcC
Confidence 57999998872 1112466789999999999998754
No 450
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=20.19 E-value=1.6e+02 Score=20.20 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=21.3
Q ss_pred CCCCEEEecC--CCccHHHHHHHhCCCeEEE
Q 041444 118 HKPDCLVADI--FFPWATDAAAKFGIPRLVF 146 (367)
Q Consensus 118 ~~~D~vi~D~--~~~~~~~~A~~lgiP~v~~ 146 (367)
.+.--||++. ..+-+..+|+.+|+|+++-
T Consensus 29 ~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg 59 (80)
T PF00391_consen 29 QRVAGIVTEEGGPTSHAAILARELGIPAIVG 59 (80)
T ss_dssp TTSSEEEESSSSTTSHHHHHHHHTT-EEEES
T ss_pred hheEEEEEEcCCccchHHHHHHHcCCCEEEe
Confidence 4677788775 3345788999999999883
No 451
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=20.09 E-value=1.4e+02 Score=28.10 Aligned_cols=32 Identities=41% Similarity=0.440 Sum_probs=20.7
Q ss_pred HHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEE
Q 041444 111 LEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLV 145 (367)
Q Consensus 111 l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~ 145 (367)
+.+.++..++|++|... ....+|+++|+|++.
T Consensus 348 ~~~~i~~~~pDl~ig~s---~~~~~a~~~gip~~~ 379 (410)
T cd01968 348 LKKLLKEKKADLLVAGG---KERYLALKLGIPFCD 379 (410)
T ss_pred HHHHHhhcCCCEEEECC---cchhhHHhcCCCEEE
Confidence 33444456788887763 335678888888764
No 452
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=20.07 E-value=91 Score=26.91 Aligned_cols=32 Identities=9% Similarity=-0.011 Sum_probs=28.6
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGV 36 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh 36 (367)
-+.+|+++...||.|-....+.||++|....+
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ 77 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLGDSY 77 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhChhh
Confidence 46789999999999999999999999987644
No 453
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=20.03 E-value=2.1e+02 Score=25.06 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=30.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+|+|.-=+|-|=..-...||..|+++|++|-++=.+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~D 38 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCD 38 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeC
Confidence 3567776677899999999999999999999887444
Done!