Query 041444
Match_columns 367
No_of_seqs 189 out of 1359
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 11:51:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbf_A Flavonoid 3-O-glucosylt 100.0 6.4E-51 2.2E-55 380.5 26.4 327 5-367 11-345 (454)
2 2vch_A Hydroquinone glucosyltr 100.0 9E-45 3.1E-49 344.3 33.2 337 2-367 1-357 (480)
3 2pq6_A UDP-glucuronosyl/UDP-gl 100.0 1.8E-44 6.2E-49 343.1 25.6 344 1-367 1-371 (482)
4 2acv_A Triterpene UDP-glucosyl 100.0 6.2E-44 2.1E-48 337.2 28.6 328 6-367 8-350 (463)
5 2c1x_A UDP-glucose flavonoid 3 100.0 9.3E-44 3.2E-48 335.2 26.6 332 1-367 1-343 (456)
6 2iya_A OLEI, oleandomycin glyc 100.0 2.3E-27 8E-32 222.4 25.0 299 6-367 11-323 (424)
7 4amg_A Snogd; transferase, pol 99.9 2.8E-26 9.5E-31 213.3 12.4 271 6-367 21-306 (400)
8 1iir_A Glycosyltransferase GTF 99.9 1.8E-23 6.2E-28 195.3 23.7 279 8-365 1-301 (415)
9 2iyf_A OLED, oleandomycin glyc 99.9 1E-22 3.6E-27 191.1 22.0 293 1-367 1-301 (430)
10 1rrv_A Glycosyltransferase GTF 99.9 2.2E-22 7.6E-27 188.0 23.7 279 8-366 1-303 (416)
11 3ia7_A CALG4; glycosysltransfe 99.9 3.6E-21 1.2E-25 178.7 22.1 283 6-366 3-298 (402)
12 3rsc_A CALG2; TDP, enediyne, s 99.9 2E-21 6.7E-26 181.5 18.3 280 6-366 19-314 (415)
13 3h4t_A Glycosyltransferase GTF 99.8 1.3E-20 4.5E-25 175.3 15.6 271 8-366 1-285 (404)
14 2yjn_A ERYCIII, glycosyltransf 99.8 1.4E-18 4.9E-23 163.4 19.2 285 6-366 19-336 (441)
15 2p6p_A Glycosyl transferase; X 99.8 4.2E-19 1.4E-23 164.0 12.8 260 8-366 1-280 (384)
16 3oti_A CALG3; calicheamicin, T 99.7 3.4E-17 1.2E-21 151.9 16.7 264 6-366 19-300 (398)
17 4fzr_A SSFS6; structural genom 99.7 1.3E-16 4.5E-21 147.9 18.5 270 6-366 14-301 (398)
18 3tsa_A SPNG, NDP-rhamnosyltran 99.6 4.6E-15 1.6E-19 137.1 15.5 128 8-147 2-142 (391)
19 3otg_A CALG1; calicheamicin, T 99.6 3.4E-14 1.1E-18 132.2 21.2 267 6-366 19-309 (412)
20 2o6l_A UDP-glucuronosyltransfe 98.9 5.2E-09 1.8E-13 84.5 8.9 78 272-366 7-85 (170)
21 3s2u_A UDP-N-acetylglucosamine 98.8 3.2E-08 1.1E-12 90.2 10.7 118 7-146 2-121 (365)
22 1f0k_A MURG, UDP-N-acetylgluco 98.2 1.6E-05 5.4E-10 72.0 12.2 118 8-147 7-126 (364)
23 3fro_A GLGA glycogen synthase; 96.8 0.016 5.5E-07 53.2 13.0 40 6-45 1-45 (439)
24 2r60_A Glycosyl transferase, g 96.4 0.026 8.9E-07 53.1 12.0 45 1-45 1-60 (499)
25 2gek_A Phosphatidylinositol ma 96.1 0.015 5.2E-07 52.8 8.3 41 6-46 19-63 (406)
26 3c48_A Predicted glycosyltrans 96.0 0.042 1.4E-06 50.5 10.9 40 6-45 19-69 (438)
27 1v4v_A UDP-N-acetylglucosamine 95.3 0.066 2.2E-06 48.1 9.1 111 8-146 6-121 (376)
28 3okp_A GDP-mannose-dependent a 95.1 0.099 3.4E-06 47.1 9.7 108 5-146 2-115 (394)
29 2jjm_A Glycosyl transferase, g 94.6 0.21 7.1E-06 45.1 10.5 39 7-45 15-54 (394)
30 1vgv_A UDP-N-acetylglucosamine 94.2 0.12 4E-06 46.6 7.7 36 8-44 1-37 (384)
31 3beo_A UDP-N-acetylglucosamine 92.8 1 3.5E-05 40.0 11.5 39 6-45 7-47 (375)
32 2wqk_A 5'-nucleotidase SURE; S 92.1 0.81 2.8E-05 38.6 9.0 114 8-149 2-128 (251)
33 3ot5_A UDP-N-acetylglucosamine 91.7 0.79 2.7E-05 41.7 9.4 114 5-146 25-144 (403)
34 3dzc_A UDP-N-acetylglucosamine 91.5 0.9 3.1E-05 41.2 9.5 114 5-146 23-141 (396)
35 2iuy_A Avigt4, glycosyltransfe 90.8 0.29 9.8E-06 43.2 5.3 40 6-45 2-57 (342)
36 4hwg_A UDP-N-acetylglucosamine 90.6 0.94 3.2E-05 40.9 8.6 112 8-146 10-123 (385)
37 3s28_A Sucrose synthase 1; gly 89.9 0.56 1.9E-05 46.8 7.0 29 118-146 406-436 (816)
38 2x0d_A WSAF; GT4 family, trans 89.2 0.3 1E-05 44.7 4.2 41 5-45 44-89 (413)
39 3vue_A GBSS-I, granule-bound s 88.2 0.45 1.5E-05 45.2 4.7 39 6-44 8-52 (536)
40 2x6q_A Trehalose-synthase TRET 86.6 1 3.5E-05 40.8 6.1 42 5-46 38-81 (416)
41 1g5t_A COB(I)alamin adenosyltr 85.7 10 0.00035 30.4 10.7 40 6-45 27-66 (196)
42 2phj_A 5'-nucleotidase SURE; S 85.2 6 0.00021 33.1 9.4 114 8-149 2-128 (251)
43 2iw1_A Lipopolysaccharide core 84.6 0.85 2.9E-05 40.4 4.4 36 9-44 2-40 (374)
44 1psw_A ADP-heptose LPS heptosy 82.9 5.6 0.00019 34.9 9.0 38 8-45 1-40 (348)
45 3tov_A Glycosyl transferase fa 81.3 6.9 0.00024 34.6 9.0 43 5-47 6-50 (349)
46 1rzu_A Glycogen synthase 1; gl 80.9 1.5 5.2E-05 40.6 4.7 37 8-44 1-43 (485)
47 2qzs_A Glycogen synthase; glyc 80.2 1.7 5.8E-05 40.2 4.8 37 8-44 1-43 (485)
48 1ccw_A Protein (glutamate muta 78.1 3.5 0.00012 31.0 5.1 41 6-46 2-42 (137)
49 3to5_A CHEY homolog; alpha(5)b 75.3 4.7 0.00016 30.1 5.1 39 113-151 51-98 (134)
50 2lpm_A Two-component response 74.5 2.8 9.5E-05 30.9 3.6 35 113-147 47-86 (123)
51 1l5x_A SurviVal protein E; str 73.8 16 0.00056 31.0 8.6 37 9-47 2-38 (280)
52 2yxb_A Coenzyme B12-dependent 73.6 5.6 0.00019 30.8 5.3 42 6-47 17-58 (161)
53 3hbm_A UDP-sugar hydrolase; PS 73.5 5.4 0.00019 34.1 5.7 32 9-44 2-37 (282)
54 1mvl_A PPC decarboxylase athal 72.5 4.8 0.00016 32.7 4.8 39 5-45 17-55 (209)
55 1p3y_1 MRSD protein; flavoprot 71.2 4.1 0.00014 32.7 4.1 40 5-45 6-45 (194)
56 1y80_A Predicted cobalamin bin 70.3 6.7 0.00023 31.8 5.3 45 6-50 87-131 (210)
57 3zqu_A Probable aromatic acid 69.8 8.3 0.00029 31.3 5.7 39 6-45 3-41 (209)
58 3bgw_A DNAB-like replicative h 68.6 43 0.0015 30.6 11.0 43 8-50 198-240 (444)
59 3gl9_A Response regulator; bet 67.3 12 0.00041 26.7 5.8 39 113-151 40-87 (122)
60 1id1_A Putative potassium chan 67.0 4.8 0.00016 30.6 3.6 34 6-44 2-35 (153)
61 2i2x_B MTAC, methyltransferase 66.6 8.8 0.0003 32.3 5.5 45 6-50 122-166 (258)
62 3ezx_A MMCP 1, monomethylamine 65.3 11 0.00038 30.7 5.7 46 5-50 90-135 (215)
63 2q6t_A DNAB replication FORK h 64.4 43 0.0015 30.5 10.1 40 9-48 202-242 (444)
64 3qjg_A Epidermin biosynthesis 64.2 9.7 0.00033 29.9 4.8 39 8-47 6-44 (175)
65 3ug7_A Arsenical pump-driving 63.4 36 0.0012 29.9 9.1 39 7-45 25-64 (349)
66 2g1u_A Hypothetical protein TM 63.2 7.9 0.00027 29.4 4.2 36 4-44 16-51 (155)
67 3vot_A L-amino acid ligase, BL 61.0 57 0.002 29.3 10.3 34 110-143 66-101 (425)
68 3lqk_A Dipicolinate synthase s 60.7 14 0.00046 29.8 5.2 40 6-46 6-46 (201)
69 2r8r_A Sensor protein; KDPD, P 58.7 18 0.00061 29.8 5.7 41 6-46 5-45 (228)
70 2jzc_A UDP-N-acetylglucosamine 58.2 12 0.00042 30.6 4.7 41 284-325 26-72 (224)
71 3t6k_A Response regulator rece 58.0 21 0.00073 25.8 5.8 38 113-150 42-88 (136)
72 3m6m_D Sensory/regulatory prot 56.9 17 0.00056 26.8 5.0 38 113-150 52-100 (143)
73 1kjn_A MTH0777; hypotethical p 56.0 22 0.00076 26.9 5.2 44 1-44 1-45 (157)
74 3f6p_A Transcriptional regulat 55.7 24 0.00082 24.8 5.6 38 113-150 40-83 (120)
75 3iqw_A Tail-anchored protein t 55.4 66 0.0023 28.0 9.3 39 8-46 16-55 (334)
76 1sbz_A Probable aromatic acid 54.9 19 0.00064 28.9 5.1 36 9-45 2-38 (197)
77 1qzu_A Hypothetical protein MD 53.1 14 0.00049 29.8 4.2 39 6-45 18-57 (206)
78 2hy7_A Glucuronosyltransferase 52.9 8.8 0.0003 34.6 3.3 37 6-44 13-52 (406)
79 3mc3_A DSRE/DSRF-like family p 52.8 30 0.001 25.5 5.8 40 7-46 15-57 (134)
80 1q57_A DNA primase/helicase; d 52.3 57 0.0019 30.2 8.8 40 9-48 244-284 (503)
81 4g6h_A Rotenone-insensitive NA 52.1 9.6 0.00033 35.6 3.5 36 5-45 40-75 (502)
82 3mcu_A Dipicolinate synthase, 51.8 16 0.00054 29.6 4.2 40 6-46 4-44 (207)
83 2ejb_A Probable aromatic acid 51.7 24 0.00082 28.0 5.2 37 8-45 2-38 (189)
84 4dim_A Phosphoribosylglycinami 50.3 71 0.0024 28.3 9.0 35 5-44 5-39 (403)
85 3vps_A TUNA, NAD-dependent epi 50.3 20 0.00067 30.6 5.0 40 1-44 1-40 (321)
86 2zts_A Putative uncharacterize 50.2 35 0.0012 27.7 6.5 41 9-49 32-73 (251)
87 3llv_A Exopolyphosphatase-rela 49.0 11 0.00037 28.0 2.7 34 6-44 5-38 (141)
88 2qs7_A Uncharacterized protein 48.8 27 0.00092 26.2 5.0 38 8-45 8-46 (144)
89 3eag_A UDP-N-acetylmuramate:L- 48.6 18 0.00062 31.5 4.5 34 6-43 3-36 (326)
90 1lss_A TRK system potassium up 48.3 24 0.00083 25.6 4.7 33 7-44 4-36 (140)
91 3gt7_A Sensor protein; structu 48.0 34 0.0012 25.3 5.6 38 113-150 45-91 (154)
92 1g63_A Epidermin modifying enz 47.9 17 0.00059 28.6 3.8 38 8-46 3-40 (181)
93 3c3m_A Response regulator rece 47.2 39 0.0013 24.4 5.7 37 113-149 41-86 (138)
94 4b4o_A Epimerase family protei 46.8 12 0.00039 32.0 2.9 32 9-44 2-33 (298)
95 3io3_A DEHA2D07832P; chaperone 46.4 1.1E+02 0.0039 26.7 9.4 40 7-46 17-59 (348)
96 1dbw_A Transcriptional regulat 45.7 41 0.0014 23.6 5.5 38 113-150 41-85 (126)
97 1xp8_A RECA protein, recombina 45.6 1.6E+02 0.0054 26.0 10.8 39 9-47 76-114 (366)
98 2r6a_A DNAB helicase, replicat 45.4 1.7E+02 0.006 26.5 10.9 41 8-48 204-245 (454)
99 3oy2_A Glycosyltransferase B73 45.0 21 0.00073 31.7 4.6 37 8-45 1-40 (413)
100 2gk4_A Conserved hypothetical 44.6 17 0.00057 30.0 3.4 21 24-44 32-52 (232)
101 3g0o_A 3-hydroxyisobutyrate de 44.5 14 0.00048 31.7 3.1 38 1-43 1-38 (303)
102 3nhm_A Response regulator; pro 44.4 52 0.0018 23.3 6.0 37 113-149 41-86 (133)
103 3cg0_A Response regulator rece 44.4 37 0.0013 24.4 5.2 39 113-151 48-93 (140)
104 1f9y_A HPPK, protein (6-hydrox 44.2 23 0.00078 27.2 3.8 28 288-315 2-29 (158)
105 2qx0_A 7,8-dihydro-6-hydroxyme 43.9 30 0.001 26.6 4.5 29 288-316 3-31 (159)
106 3a10_A Response regulator; pho 43.5 61 0.0021 22.1 6.1 37 113-149 39-82 (116)
107 3h1g_A Chemotaxis protein CHEY 43.3 56 0.0019 23.1 6.0 34 117-150 49-91 (129)
108 3dff_A Teicoplanin pseudoaglyc 43.0 30 0.001 29.2 4.9 43 1-44 1-44 (273)
109 2rjn_A Response regulator rece 42.9 44 0.0015 24.6 5.5 39 113-151 45-90 (154)
110 4gyw_A UDP-N-acetylglucosamine 42.8 33 0.0011 33.7 5.7 70 284-364 520-595 (723)
111 1tmy_A CHEY protein, TMY; chem 42.5 46 0.0016 23.0 5.3 37 115-151 43-86 (120)
112 3lzw_A Ferredoxin--NADP reduct 42.1 8.7 0.0003 33.1 1.4 40 1-45 1-40 (332)
113 1zgz_A Torcad operon transcrip 41.4 50 0.0017 22.9 5.4 38 113-150 40-83 (122)
114 3eod_A Protein HNR; response r 41.4 60 0.002 22.8 5.9 38 1-42 1-38 (130)
115 2a33_A Hypothetical protein; s 41.2 51 0.0017 26.7 5.8 36 6-41 12-51 (215)
116 3ip0_A 2-amino-4-hydroxy-6-hyd 41.2 30 0.001 26.6 4.1 29 288-316 2-30 (158)
117 3kjh_A CO dehydrogenase/acetyl 40.9 24 0.00083 28.8 4.0 37 9-45 2-38 (254)
118 3hv2_A Response regulator/HD d 40.8 43 0.0015 24.6 5.1 39 112-150 51-96 (153)
119 2dpo_A L-gulonate 3-dehydrogen 40.7 18 0.00062 31.4 3.2 38 2-44 1-38 (319)
120 4e7p_A Response regulator; DNA 40.7 52 0.0018 24.0 5.6 41 110-150 57-104 (150)
121 3l6d_A Putative oxidoreductase 40.6 18 0.00062 31.1 3.2 35 4-43 6-40 (306)
122 3qbc_A 2-amino-4-hydroxy-6-hyd 40.2 28 0.00097 26.8 3.8 28 288-315 6-33 (161)
123 3b2n_A Uncharacterized protein 40.0 44 0.0015 23.8 5.0 38 113-150 43-87 (133)
124 1cbk_A Protein (7,8-dihydro-6- 39.8 29 0.001 26.7 3.8 29 288-316 3-31 (160)
125 4dll_A 2-hydroxy-3-oxopropiona 39.7 34 0.0012 29.5 4.9 34 6-44 30-63 (320)
126 2rdm_A Response regulator rece 39.5 61 0.0021 22.8 5.7 38 113-150 43-89 (132)
127 3dfi_A Pseudoaglycone deacetyl 39.4 41 0.0014 28.3 5.1 43 1-44 1-44 (270)
128 3n7t_A Macrophage binding prot 39.2 63 0.0022 26.8 6.2 38 7-44 9-57 (247)
129 1xhf_A DYE resistance, aerobic 39.2 62 0.0021 22.4 5.6 37 114-150 42-84 (123)
130 2pl1_A Transcriptional regulat 39.2 71 0.0024 22.0 5.9 38 113-150 38-82 (121)
131 2qxy_A Response regulator; reg 39.2 49 0.0017 23.8 5.2 37 113-150 42-85 (142)
132 1o97_C Electron transferring f 39.1 40 0.0014 28.3 5.0 40 110-149 103-148 (264)
133 3fwz_A Inner membrane protein 39.0 17 0.00058 26.9 2.4 33 7-44 7-39 (140)
134 2qzj_A Two-component response 39.0 50 0.0017 23.7 5.1 38 113-150 42-85 (136)
135 2a9o_A Response regulator; ess 39.0 58 0.002 22.4 5.4 37 115-151 41-83 (120)
136 3kht_A Response regulator; PSI 38.9 68 0.0023 23.1 6.0 38 113-150 45-91 (144)
137 4e3z_A Putative oxidoreductase 38.9 34 0.0012 28.5 4.7 36 5-43 23-58 (272)
138 3kkj_A Amine oxidase, flavin-c 38.7 17 0.0006 29.6 2.8 19 24-42 14-32 (336)
139 2va0_A ABFS arabinofuranosidas 38.6 2.9 9.8E-05 29.3 -1.8 45 294-342 18-62 (131)
140 3bul_A Methionine synthase; tr 38.5 42 0.0014 31.8 5.5 45 6-50 97-141 (579)
141 4hb9_A Similarities with proba 38.2 22 0.00076 31.5 3.5 29 8-41 2-30 (412)
142 2qr3_A Two-component system re 38.1 47 0.0016 23.8 4.9 39 113-151 41-91 (140)
143 3i42_A Response regulator rece 38.0 46 0.0016 23.4 4.7 38 112-149 40-86 (127)
144 3kcq_A Phosphoribosylglycinami 38.0 1.6E+02 0.0054 23.8 10.4 39 3-44 4-44 (215)
145 3gpi_A NAD-dependent epimerase 37.9 37 0.0013 28.4 4.8 33 7-44 3-35 (286)
146 1efv_B Electron transfer flavo 37.9 43 0.0015 28.0 5.0 40 110-149 107-152 (255)
147 3obb_A Probable 3-hydroxyisobu 37.8 31 0.001 29.7 4.2 31 8-43 4-34 (300)
148 1mb3_A Cell division response 37.6 50 0.0017 23.0 4.8 36 114-149 40-84 (124)
149 3cu5_A Two component transcrip 37.6 56 0.0019 23.6 5.2 36 114-149 44-86 (141)
150 1srr_A SPO0F, sporulation resp 37.4 48 0.0016 23.1 4.7 36 115-150 43-85 (124)
151 3grc_A Sensor protein, kinase; 37.2 47 0.0016 23.8 4.7 38 113-150 44-90 (140)
152 3crn_A Response regulator rece 37.1 67 0.0023 22.7 5.6 38 113-150 41-85 (132)
153 1ydh_A AT5G11950; structural g 37.1 62 0.0021 26.2 5.7 35 7-41 9-47 (216)
154 3rqi_A Response regulator prot 36.6 41 0.0014 25.9 4.5 38 113-150 45-89 (184)
155 1xx6_A Thymidine kinase; NESG, 36.6 60 0.0021 25.6 5.5 44 1-44 1-45 (191)
156 3auf_A Glycinamide ribonucleot 36.5 1.7E+02 0.0059 23.8 11.5 36 6-44 21-58 (229)
157 3hr8_A Protein RECA; alpha and 36.4 2.2E+02 0.0075 25.0 11.6 39 9-47 63-101 (356)
158 1p6q_A CHEY2; chemotaxis, sign 36.0 59 0.002 22.8 5.1 37 113-149 45-90 (129)
159 1xjc_A MOBB protein homolog; s 35.8 73 0.0025 24.6 5.7 39 7-45 4-42 (169)
160 3cz5_A Two-component response 35.7 81 0.0028 23.0 6.0 38 113-150 45-89 (153)
161 1cyd_A Carbonyl reductase; sho 35.6 67 0.0023 25.9 5.9 39 1-43 1-39 (244)
162 3icc_A Putative 3-oxoacyl-(acy 35.4 1.8E+02 0.006 23.5 9.9 35 7-44 6-40 (255)
163 1efp_B ETF, protein (electron 35.3 44 0.0015 27.9 4.6 39 111-149 105-149 (252)
164 2pd6_A Estradiol 17-beta-dehyd 35.2 75 0.0026 26.0 6.2 39 1-43 1-39 (264)
165 3lyu_A Putative hydrogenase; t 35.1 34 0.0012 25.4 3.6 35 8-45 19-53 (142)
166 3d3j_A Enhancer of mRNA-decapp 34.9 38 0.0013 29.2 4.3 34 8-44 133-168 (306)
167 1p9o_A Phosphopantothenoylcyst 34.8 22 0.00075 30.8 2.7 24 23-46 67-90 (313)
168 1dhr_A Dihydropteridine reduct 34.3 61 0.0021 26.3 5.4 33 8-43 7-39 (241)
169 1vi6_A 30S ribosomal protein S 34.3 40 0.0014 27.2 4.0 32 119-150 115-148 (208)
170 3cfy_A Putative LUXO repressor 34.2 63 0.0022 23.2 5.0 35 116-150 45-86 (137)
171 1jbe_A Chemotaxis protein CHEY 34.2 83 0.0028 21.9 5.6 38 113-150 43-89 (128)
172 1qkk_A DCTD, C4-dicarboxylate 34.1 61 0.0021 23.8 5.0 39 113-151 41-86 (155)
173 1y1p_A ARII, aldehyde reductas 33.9 71 0.0024 27.3 6.1 35 5-43 9-43 (342)
174 3lte_A Response regulator; str 33.9 84 0.0029 22.0 5.7 37 113-149 44-88 (132)
175 1nff_A Putative oxidoreductase 33.9 76 0.0026 26.2 6.0 39 1-43 1-39 (260)
176 1tvm_A PTS system, galactitol- 33.7 99 0.0034 21.9 5.8 37 6-42 20-57 (113)
177 4dad_A Putative pilus assembly 33.5 38 0.0013 24.6 3.7 41 110-150 57-105 (146)
178 2gt1_A Lipopolysaccharide hept 33.5 27 0.00091 30.1 3.1 39 8-46 1-41 (326)
179 4h15_A Short chain alcohol deh 33.4 63 0.0022 27.0 5.4 33 7-42 10-42 (261)
180 3ppi_A 3-hydroxyacyl-COA dehyd 33.4 51 0.0017 27.6 4.9 32 8-42 30-61 (281)
181 2r25_B Osmosensing histidine p 33.3 96 0.0033 22.0 5.9 33 118-150 51-91 (133)
182 3dm5_A SRP54, signal recogniti 33.2 70 0.0024 29.2 5.9 41 7-47 100-140 (443)
183 3eul_A Possible nitrate/nitrit 33.2 58 0.002 23.8 4.7 40 111-150 53-99 (152)
184 4gi5_A Quinone reductase; prot 33.1 74 0.0025 27.0 5.7 39 5-43 20-61 (280)
185 1e2b_A Enzyme IIB-cellobiose; 33.1 93 0.0032 21.8 5.4 38 6-43 2-39 (106)
186 2gdz_A NAD+-dependent 15-hydro 33.1 80 0.0028 26.0 6.1 32 9-43 8-39 (267)
187 3h5i_A Response regulator/sens 33.0 91 0.0031 22.3 5.8 32 118-149 49-87 (140)
188 2b4a_A BH3024; flavodoxin-like 32.9 63 0.0022 23.0 4.8 37 111-147 51-95 (138)
189 2ew2_A 2-dehydropantoate 2-red 32.8 31 0.0011 29.4 3.5 32 7-43 3-34 (316)
190 3n0r_A Response regulator; sig 32.7 32 0.0011 29.2 3.5 37 113-149 199-242 (286)
191 3jte_A Response regulator rece 32.7 79 0.0027 22.6 5.4 34 117-150 47-87 (143)
192 3kkl_A Probable chaperone prot 32.7 71 0.0024 26.4 5.5 38 7-44 3-51 (244)
193 2vrn_A Protease I, DR1199; cys 32.3 1E+02 0.0034 23.9 6.2 40 5-45 7-46 (190)
194 3ot1_A 4-methyl-5(B-hydroxyeth 32.2 84 0.0029 25.0 5.8 37 7-44 9-45 (208)
195 1yio_A Response regulatory pro 32.2 59 0.002 25.4 4.9 38 113-150 42-86 (208)
196 2hy5_B Intracellular sulfur ox 32.0 66 0.0023 23.8 4.7 34 12-45 11-46 (136)
197 1kgs_A DRRD, DNA binding respo 32.0 80 0.0027 24.9 5.7 39 113-151 40-85 (225)
198 3pdi_B Nitrogenase MOFE cofact 31.9 45 0.0015 30.6 4.5 32 111-145 367-398 (458)
199 3lf2_A Short chain oxidoreduct 31.8 58 0.002 27.0 4.9 34 7-43 7-40 (265)
200 3qha_A Putative oxidoreductase 31.8 31 0.001 29.4 3.2 33 7-44 15-47 (296)
201 3bch_A 40S ribosomal protein S 31.7 45 0.0015 27.8 4.0 32 119-150 151-184 (253)
202 1bg6_A N-(1-D-carboxylethyl)-L 31.7 34 0.0012 29.9 3.6 33 6-43 3-35 (359)
203 3q9s_A DNA-binding response re 31.6 80 0.0027 25.8 5.7 38 113-150 75-118 (249)
204 2vsy_A XCC0866; transferase, g 31.5 63 0.0021 30.2 5.6 39 6-44 204-246 (568)
205 3sbx_A Putative uncharacterize 31.5 56 0.0019 25.9 4.4 35 7-41 13-50 (189)
206 3f67_A Putative dienelactone h 31.5 82 0.0028 24.8 5.8 36 8-43 32-67 (241)
207 1z82_A Glycerol-3-phosphate de 31.5 35 0.0012 29.6 3.6 33 7-44 14-46 (335)
208 4gbj_A 6-phosphogluconate dehy 31.4 47 0.0016 28.3 4.3 30 8-42 6-35 (297)
209 3c97_A Signal transduction his 31.4 1E+02 0.0035 21.9 5.8 26 114-139 49-76 (140)
210 3cmw_A Protein RECA, recombina 31.4 2.4E+02 0.0081 30.8 10.2 42 8-49 384-425 (1706)
211 2xj4_A MIPZ; replication, cell 31.2 61 0.0021 27.3 5.0 31 15-45 13-43 (286)
212 3ic5_A Putative saccharopine d 31.1 36 0.0012 23.7 3.1 32 7-43 5-37 (118)
213 2ew8_A (S)-1-phenylethanol deh 30.9 87 0.003 25.5 5.9 39 1-43 1-39 (249)
214 1cp2_A CP2, nitrogenase iron p 30.9 60 0.0021 26.8 4.9 37 9-45 3-39 (269)
215 3op4_A 3-oxoacyl-[acyl-carrier 30.7 70 0.0024 26.2 5.2 34 7-43 8-41 (248)
216 2j48_A Two-component sensor ki 30.7 82 0.0028 21.3 5.0 37 114-150 40-85 (119)
217 1hjr_A Holliday junction resol 30.5 71 0.0024 24.4 4.7 45 106-150 46-105 (158)
218 1weh_A Conserved hypothetical 30.4 64 0.0022 25.0 4.5 36 8-43 2-41 (171)
219 3hzh_A Chemotaxis response reg 30.3 76 0.0026 23.4 5.0 40 111-150 73-121 (157)
220 3n53_A Response regulator rece 30.3 54 0.0018 23.5 4.1 36 114-149 41-85 (140)
221 2vqe_B 30S ribosomal protein S 30.1 23 0.00077 29.7 1.9 34 118-151 157-192 (256)
222 3of5_A Dethiobiotin synthetase 30.1 80 0.0027 25.6 5.4 34 9-42 6-40 (228)
223 3end_A Light-independent proto 30.0 70 0.0024 27.1 5.3 38 8-45 42-79 (307)
224 1u7z_A Coenzyme A biosynthesis 30.0 39 0.0013 27.7 3.3 22 23-44 36-57 (226)
225 4dmm_A 3-oxoacyl-[acyl-carrier 30.0 63 0.0022 26.9 4.9 34 7-43 27-60 (269)
226 1ys7_A Transcriptional regulat 30.0 91 0.0031 24.8 5.8 37 113-149 45-88 (233)
227 1byi_A Dethiobiotin synthase; 29.9 69 0.0024 25.5 5.0 32 10-41 4-36 (224)
228 3r0j_A Possible two component 29.8 74 0.0025 25.9 5.2 39 112-150 60-105 (250)
229 3ty2_A 5'-nucleotidase SURE; s 29.8 73 0.0025 26.7 5.0 41 5-47 9-49 (261)
230 3ghy_A Ketopantoate reductase 29.7 32 0.0011 29.9 3.0 32 7-43 3-34 (335)
231 1i3c_A Response regulator RCP1 29.7 1.1E+02 0.0038 22.1 5.8 33 118-150 60-101 (149)
232 3bbn_B Ribosomal protein S2; s 29.7 35 0.0012 28.0 3.0 32 119-150 157-190 (231)
233 2jk1_A HUPR, hydrogenase trans 29.6 67 0.0023 23.0 4.5 37 114-150 39-82 (139)
234 3hwr_A 2-dehydropantoate 2-red 29.4 38 0.0013 29.2 3.4 31 6-41 18-48 (318)
235 2qv0_A Protein MRKE; structura 29.4 1.1E+02 0.0036 21.9 5.6 27 113-139 49-77 (143)
236 2gkg_A Response regulator homo 29.3 84 0.0029 21.7 4.9 33 114-146 44-86 (127)
237 3o26_A Salutaridine reductase; 29.3 57 0.0019 27.5 4.5 34 7-43 11-44 (311)
238 1gz6_A Estradiol 17 beta-dehyd 29.2 70 0.0024 27.5 5.1 38 1-41 1-39 (319)
239 1zem_A Xylitol dehydrogenase; 29.2 96 0.0033 25.5 5.9 39 1-43 1-39 (262)
240 1wcv_1 SOJ, segregation protei 29.1 46 0.0016 27.5 3.8 39 8-46 7-46 (257)
241 2ptg_A Enoyl-acyl carrier redu 29.1 83 0.0028 26.9 5.6 32 8-42 9-42 (319)
242 2jah_A Clavulanic acid dehydro 28.9 1E+02 0.0034 25.1 5.9 39 1-43 1-39 (247)
243 1wek_A Hypothetical protein TT 28.8 63 0.0021 26.2 4.4 36 8-43 38-77 (217)
244 3da8_A Probable 5'-phosphoribo 28.8 2.3E+02 0.0078 22.8 9.3 39 5-46 10-49 (215)
245 1f0y_A HCDH, L-3-hydroxyacyl-C 28.7 42 0.0014 28.6 3.6 33 7-44 15-47 (302)
246 2w36_A Endonuclease V; hypoxan 28.7 44 0.0015 27.3 3.4 30 118-147 102-138 (225)
247 2afh_E Nitrogenase iron protei 28.7 73 0.0025 26.7 5.1 38 8-45 3-40 (289)
248 3doj_A AT3G25530, dehydrogenas 28.6 49 0.0017 28.3 4.0 34 6-44 20-53 (310)
249 2l2q_A PTS system, cellobiose- 28.6 89 0.003 21.9 4.7 36 7-42 4-39 (109)
250 2ae2_A Protein (tropinone redu 28.5 79 0.0027 26.0 5.2 33 8-43 9-41 (260)
251 3e1t_A Halogenase; flavoprotei 28.4 31 0.001 32.1 2.8 39 1-44 1-39 (512)
252 3ew7_A LMO0794 protein; Q8Y8U8 28.4 38 0.0013 26.8 3.1 21 24-44 13-33 (221)
253 3e8x_A Putative NAD-dependent 28.3 38 0.0013 27.4 3.1 34 7-44 21-54 (236)
254 2h7i_A Enoyl-[acyl-carrier-pro 28.3 55 0.0019 27.2 4.2 40 1-43 1-41 (269)
255 3hn2_A 2-dehydropantoate 2-red 28.3 47 0.0016 28.5 3.8 32 8-44 3-34 (312)
256 4g65_A TRK system potassium up 28.1 21 0.00072 32.9 1.6 34 6-44 2-35 (461)
257 3edm_A Short chain dehydrogena 28.1 70 0.0024 26.4 4.8 34 7-43 7-40 (259)
258 1a04_A Nitrate/nitrite respons 28.0 73 0.0025 25.1 4.7 37 114-150 46-89 (215)
259 2xci_A KDO-transferase, 3-deox 28.0 1.8E+02 0.0061 25.5 7.7 35 8-44 41-75 (374)
260 1mvo_A PHOP response regulator 28.0 1E+02 0.0035 21.7 5.2 36 114-149 42-84 (136)
261 3gvc_A Oxidoreductase, probabl 28.0 74 0.0025 26.6 5.0 33 8-43 29-61 (277)
262 1zh2_A KDP operon transcriptio 27.9 80 0.0028 21.6 4.5 36 116-151 42-83 (121)
263 4ep4_A Crossover junction endo 27.8 1.3E+02 0.0045 23.1 5.9 46 106-151 50-110 (166)
264 3alj_A 2-methyl-3-hydroxypyrid 27.8 42 0.0015 29.5 3.5 33 6-43 10-42 (379)
265 4ds3_A Phosphoribosylglycinami 27.8 2.3E+02 0.008 22.6 10.1 38 4-44 4-43 (209)
266 2hmt_A YUAA protein; RCK, KTN, 27.8 31 0.0011 25.1 2.3 33 7-44 6-38 (144)
267 2zay_A Response regulator rece 27.6 71 0.0024 23.0 4.4 38 113-150 46-92 (147)
268 4dgk_A Phytoene dehydrogenase; 27.6 27 0.00093 32.1 2.3 31 8-43 2-32 (501)
269 3dtt_A NADP oxidoreductase; st 27.6 49 0.0017 27.2 3.7 34 6-44 18-51 (245)
270 2pnf_A 3-oxoacyl-[acyl-carrier 27.6 97 0.0033 25.0 5.6 32 9-43 8-39 (248)
271 2raf_A Putative dinucleotide-b 27.6 55 0.0019 26.1 3.9 32 7-43 19-50 (209)
272 4dik_A Flavoprotein; TM0755, e 27.5 49 0.0017 29.8 3.9 49 275-323 254-303 (410)
273 3cg4_A Response regulator rece 27.4 1.1E+02 0.0039 21.6 5.5 38 1-42 1-38 (142)
274 3f6c_A Positive transcription 27.3 77 0.0026 22.3 4.4 35 115-149 42-83 (134)
275 2xvy_A Chelatase, putative; me 27.3 72 0.0025 26.6 4.7 39 286-324 10-50 (269)
276 1zi8_A Carboxymethylenebutenol 27.1 92 0.0031 24.4 5.3 34 9-42 29-62 (236)
277 3lua_A Response regulator rece 27.1 51 0.0018 23.6 3.4 39 112-150 42-91 (140)
278 3fet_A Electron transfer flavo 27.0 1E+02 0.0034 23.7 5.1 39 109-149 61-102 (166)
279 2qvg_A Two component response 26.9 1.1E+02 0.0039 21.6 5.4 33 118-150 58-99 (143)
280 3qua_A Putative uncharacterize 26.9 98 0.0033 24.7 5.1 35 7-41 22-59 (199)
281 4dzz_A Plasmid partitioning pr 26.7 80 0.0027 24.6 4.8 37 10-46 4-41 (206)
282 3lrx_A Putative hydrogenase; a 26.7 36 0.0012 25.9 2.5 36 8-46 24-59 (158)
283 3sju_A Keto reductase; short-c 26.6 66 0.0023 26.9 4.4 34 7-43 23-56 (279)
284 1k68_A Phytochrome response re 26.6 1.3E+02 0.0044 21.1 5.7 33 118-150 54-95 (140)
285 2oqr_A Sensory transduction pr 26.6 92 0.0032 24.7 5.2 38 114-151 43-86 (230)
286 3mm4_A Histidine kinase homolo 26.4 71 0.0024 25.1 4.4 33 118-150 118-161 (206)
287 2xxa_A Signal recognition part 26.3 1.2E+02 0.0042 27.4 6.4 40 8-47 101-141 (433)
288 1qsg_A Enoyl-[acyl-carrier-pro 26.3 70 0.0024 26.4 4.5 34 9-44 10-44 (265)
289 2cg8_A Dihydroneopterin aldola 26.3 42 0.0014 28.3 3.0 31 287-317 120-150 (270)
290 2l82_A Designed protein OR32; 26.3 1.4E+02 0.0047 20.9 5.0 34 288-325 3-36 (162)
291 2qsj_A DNA-binding response re 26.3 70 0.0024 23.4 4.1 39 111-149 41-87 (154)
292 3cnb_A DNA-binding response re 26.2 87 0.003 22.3 4.6 38 113-150 48-94 (143)
293 4e6p_A Probable sorbitol dehyd 26.2 1.1E+02 0.0038 25.0 5.7 32 9-43 9-40 (259)
294 3h2s_A Putative NADH-flavin re 26.2 44 0.0015 26.6 3.1 20 24-43 13-32 (224)
295 2ywr_A Phosphoribosylglycinami 26.2 2.5E+02 0.0086 22.5 10.7 34 8-44 2-37 (216)
296 3ioy_A Short-chain dehydrogena 26.1 95 0.0033 26.6 5.4 33 8-43 8-40 (319)
297 3p0j_A Tyrosyl-tRNA synthetase 26.1 72 0.0025 31.0 4.9 41 5-45 380-425 (690)
298 2h78_A Hibadh, 3-hydroxyisobut 26.0 62 0.0021 27.4 4.2 32 7-43 3-34 (302)
299 3pdi_A Nitrogenase MOFE cofact 26.0 58 0.002 30.1 4.2 33 110-145 392-424 (483)
300 4dqx_A Probable oxidoreductase 25.9 84 0.0029 26.3 4.9 33 8-43 27-59 (277)
301 2r6j_A Eugenol synthase 1; phe 25.9 58 0.002 27.7 4.0 33 8-44 12-44 (318)
302 2bw0_A 10-FTHFDH, 10-formyltet 25.9 87 0.003 27.2 5.1 34 5-43 20-53 (329)
303 3ksu_A 3-oxoacyl-acyl carrier 25.8 79 0.0027 26.1 4.7 32 8-42 11-42 (262)
304 3tjr_A Short chain dehydrogena 25.8 88 0.003 26.5 5.1 33 8-43 31-63 (301)
305 1ehi_A LMDDL2, D-alanine:D-lac 25.8 64 0.0022 28.6 4.3 38 7-44 3-45 (377)
306 4eso_A Putative oxidoreductase 25.7 81 0.0028 25.9 4.7 33 8-43 8-40 (255)
307 1pno_A NAD(P) transhydrogenase 25.7 75 0.0026 24.5 3.9 37 8-44 24-63 (180)
308 3dfu_A Uncharacterized protein 25.7 55 0.0019 26.9 3.5 33 6-43 5-37 (232)
309 3u5t_A 3-oxoacyl-[acyl-carrier 25.7 53 0.0018 27.4 3.6 34 7-43 26-59 (267)
310 2j9r_A Thymidine kinase; TK1, 25.7 1.6E+02 0.0054 23.8 6.2 40 5-44 25-65 (214)
311 1y56_B Sarcosine oxidase; dehy 25.7 43 0.0015 29.4 3.1 33 7-44 5-37 (382)
312 3eq2_A Probable two-component 25.5 83 0.0028 27.8 5.0 38 113-150 43-87 (394)
313 3la6_A Tyrosine-protein kinase 25.4 1.2E+02 0.0041 25.6 5.8 39 8-46 92-132 (286)
314 2o2s_A Enoyl-acyl carrier redu 25.3 93 0.0032 26.5 5.2 33 8-42 9-42 (315)
315 3i83_A 2-dehydropantoate 2-red 25.3 50 0.0017 28.4 3.4 33 8-45 3-35 (320)
316 1d4o_A NADP(H) transhydrogenas 25.2 77 0.0026 24.5 3.9 37 8-44 23-62 (184)
317 2b69_A UDP-glucuronate decarbo 25.2 96 0.0033 26.6 5.3 34 6-43 26-59 (343)
318 2rjn_A Response regulator rece 25.2 1.4E+02 0.0048 21.6 5.7 39 1-43 1-39 (154)
319 2rh8_A Anthocyanidin reductase 25.2 94 0.0032 26.5 5.3 31 8-42 10-40 (338)
320 3rzi_A Probable 3-deoxy-D-arab 25.1 3.2E+02 0.011 24.8 8.4 84 222-325 280-368 (462)
321 3rfo_A Methionyl-tRNA formyltr 25.0 97 0.0033 26.8 5.1 36 5-45 2-37 (317)
322 2gwr_A DNA-binding response re 25.0 71 0.0024 25.7 4.2 34 116-149 46-85 (238)
323 1jx7_A Hypothetical protein YC 25.0 1E+02 0.0034 21.5 4.6 27 18-44 15-43 (117)
324 3pid_A UDP-glucose 6-dehydroge 24.9 51 0.0017 30.0 3.4 34 5-44 34-67 (432)
325 1ks9_A KPA reductase;, 2-dehyd 24.9 53 0.0018 27.5 3.5 31 9-44 2-32 (291)
326 2jba_A Phosphate regulon trans 24.9 66 0.0022 22.4 3.6 37 114-150 41-86 (127)
327 1xrs_B D-lysine 5,6-aminomutas 24.8 67 0.0023 26.9 3.9 45 6-50 119-172 (262)
328 1mxh_A Pteridine reductase 2; 24.8 78 0.0027 26.3 4.5 32 9-43 12-43 (276)
329 1yde_A Retinal dehydrogenase/r 24.8 1E+02 0.0036 25.5 5.3 32 9-43 10-41 (270)
330 3ucx_A Short chain dehydrogena 24.8 1E+02 0.0035 25.4 5.2 33 8-43 11-43 (264)
331 1rcu_A Conserved hypothetical 24.6 1.2E+02 0.004 24.1 5.2 34 7-40 23-63 (195)
332 3u7q_A Nitrogenase molybdenum- 24.5 67 0.0023 29.8 4.3 33 110-145 408-440 (492)
333 1mio_B Nitrogenase molybdenum 24.4 73 0.0025 29.1 4.5 33 111-146 377-409 (458)
334 3dez_A OPRT, oprtase, orotate 24.4 1.4E+02 0.0048 24.6 5.8 28 119-146 100-129 (243)
335 2vou_A 2,6-dihydroxypyridine h 24.3 62 0.0021 28.7 4.0 33 6-43 4-36 (397)
336 2fb6_A Conserved hypothetical 24.2 94 0.0032 22.2 4.2 37 8-44 8-48 (117)
337 3l77_A Short-chain alcohol deh 23.9 86 0.0029 25.2 4.5 32 9-43 3-34 (235)
338 4e12_A Diketoreductase; oxidor 23.9 67 0.0023 27.0 3.9 34 6-44 3-36 (283)
339 3tox_A Short chain dehydrogena 23.9 83 0.0028 26.4 4.5 33 7-42 7-39 (280)
340 1hdo_A Biliverdin IX beta redu 23.8 53 0.0018 25.6 3.1 32 8-43 4-35 (206)
341 2r85_A PURP protein PF1517; AT 23.8 80 0.0028 27.0 4.5 32 7-44 2-33 (334)
342 1v0j_A UDP-galactopyranose mut 23.8 69 0.0023 28.6 4.1 39 1-44 1-40 (399)
343 3afn_B Carbonyl reductase; alp 23.7 83 0.0028 25.6 4.4 21 24-44 20-40 (258)
344 3gem_A Short chain dehydrogena 23.7 66 0.0023 26.6 3.8 34 8-44 27-60 (260)
345 3hdv_A Response regulator; PSI 23.6 1.3E+02 0.0044 21.1 5.1 38 1-42 1-38 (136)
346 2xdo_A TETX2 protein; tetracyc 23.6 63 0.0022 28.6 3.9 33 6-43 25-57 (398)
347 2fsv_C NAD(P) transhydrogenase 23.5 84 0.0029 24.8 3.9 37 8-44 47-86 (203)
348 3f8d_A Thioredoxin reductase ( 23.5 64 0.0022 27.2 3.8 33 7-44 15-47 (323)
349 4da9_A Short-chain dehydrogena 23.5 1.6E+02 0.0054 24.5 6.2 33 8-43 29-61 (280)
350 4f0j_A Probable hydrolytic enz 23.4 82 0.0028 25.9 4.4 36 7-43 46-81 (315)
351 3l18_A Intracellular protease 23.4 1.8E+02 0.0061 21.8 6.1 38 7-45 2-39 (168)
352 3dkr_A Esterase D; alpha beta 23.4 76 0.0026 25.0 4.1 34 9-42 23-56 (251)
353 1k66_A Phytochrome response re 23.3 1.6E+02 0.0056 20.8 5.7 33 118-150 61-102 (149)
354 3cmu_A Protein RECA, recombina 23.2 1.7E+02 0.006 32.4 7.5 89 6-128 1426-1514(2050)
355 1t35_A Hypothetical protein YV 23.2 1.2E+02 0.0042 23.8 5.1 33 9-41 3-39 (191)
356 3uf0_A Short-chain dehydrogena 23.2 1E+02 0.0035 25.7 4.9 32 8-42 31-62 (273)
357 3k30_A Histamine dehydrogenase 23.2 56 0.0019 31.7 3.6 34 6-44 390-423 (690)
358 2ayx_A Sensor kinase protein R 23.2 1E+02 0.0034 25.3 4.8 38 113-150 167-211 (254)
359 3lk7_A UDP-N-acetylmuramoylala 23.2 1E+02 0.0035 28.0 5.3 33 6-43 8-40 (451)
360 2wyu_A Enoyl-[acyl carrier pro 23.1 63 0.0021 26.7 3.5 33 9-43 9-42 (261)
361 3q0i_A Methionyl-tRNA formyltr 23.0 1.4E+02 0.0047 25.8 5.7 35 5-44 5-39 (318)
362 2j37_W Signal recognition part 23.0 1.2E+02 0.004 28.2 5.6 40 7-46 101-140 (504)
363 1djl_A Transhydrogenase DIII; 23.0 87 0.003 24.8 3.9 37 8-44 46-85 (207)
364 3d3w_A L-xylulose reductase; u 23.0 1.7E+02 0.0058 23.4 6.2 21 23-43 19-39 (244)
365 3gt7_A Sensor protein; structu 22.9 1.4E+02 0.0047 21.8 5.2 39 1-43 1-39 (154)
366 3oz2_A Digeranylgeranylglycero 22.9 45 0.0016 29.1 2.8 19 24-42 16-34 (397)
367 1gee_A Glucose 1-dehydrogenase 22.9 92 0.0032 25.4 4.6 39 1-43 1-39 (261)
368 3vtf_A UDP-glucose 6-dehydroge 22.9 64 0.0022 29.5 3.7 32 6-42 20-51 (444)
369 2wtm_A EST1E; hydrolase; 1.60A 22.9 1.3E+02 0.0043 24.1 5.4 34 9-42 28-63 (251)
370 2bcg_G Secretory pathway GDP d 22.8 55 0.0019 29.8 3.3 34 6-44 10-43 (453)
371 1dz3_A Stage 0 sporulation pro 22.8 1.2E+02 0.004 21.2 4.7 36 114-149 43-86 (130)
372 2xzm_B RPS0E; ribosome, transl 22.8 49 0.0017 27.3 2.6 32 119-150 114-147 (241)
373 3qxc_A Dethiobiotin synthetase 22.7 1.1E+02 0.0039 25.1 4.9 41 109-149 119-170 (242)
374 3pfb_A Cinnamoyl esterase; alp 22.7 1.2E+02 0.004 24.3 5.2 35 9-43 47-83 (270)
375 1ihu_A Arsenical pump-driving 22.6 82 0.0028 29.8 4.6 41 5-45 5-46 (589)
376 4fu0_A D-alanine--D-alanine li 22.6 57 0.002 28.6 3.3 36 6-42 2-42 (357)
377 1rw7_A YDR533CP; alpha-beta sa 22.5 1.7E+02 0.0058 23.8 6.1 38 8-45 4-52 (243)
378 3sxp_A ADP-L-glycero-D-mannohe 22.5 1.5E+02 0.005 25.7 6.1 35 5-43 8-44 (362)
379 3v2g_A 3-oxoacyl-[acyl-carrier 22.4 92 0.0031 25.9 4.5 33 8-43 31-63 (271)
380 3uve_A Carveol dehydrogenase ( 22.4 1.1E+02 0.0037 25.6 4.9 33 8-43 11-43 (286)
381 1jzt_A Hypothetical 27.5 kDa p 22.4 55 0.0019 27.1 2.9 34 8-44 59-94 (246)
382 3p32_A Probable GTPase RV1496/ 22.3 1.2E+02 0.0041 26.5 5.4 40 6-45 78-117 (355)
383 3rpe_A MDAB, modulator of drug 22.3 1.4E+02 0.0048 24.1 5.3 42 3-44 21-69 (218)
384 3q3e_A HMW1C-like glycosyltran 22.3 2.1E+02 0.0073 27.4 7.2 37 286-322 440-476 (631)
385 3heb_A Response regulator rece 22.3 1.6E+02 0.0056 21.2 5.5 34 117-150 57-99 (152)
386 3kcn_A Adenylate cyclase homol 22.2 1.7E+02 0.0058 21.1 5.6 37 114-150 42-86 (151)
387 2x5n_A SPRPN10, 26S proteasome 22.2 1.3E+02 0.0043 23.7 5.0 37 8-44 107-144 (192)
388 3c3w_A Two component transcrip 22.1 66 0.0022 25.7 3.4 36 114-149 42-84 (225)
389 3ai3_A NADPH-sorbose reductase 22.1 1.8E+02 0.0061 23.7 6.2 32 9-43 8-39 (263)
390 1s8n_A Putative antiterminator 22.1 1.3E+02 0.0044 23.3 5.1 38 113-150 52-95 (205)
391 4as2_A Phosphorylcholine phosp 22.1 64 0.0022 28.0 3.4 24 21-44 145-168 (327)
392 2e6x_A TT1592, hypothetical pr 21.9 74 0.0025 19.9 2.6 18 309-326 4-21 (69)
393 3awd_A GOX2181, putative polyo 21.9 92 0.0032 25.4 4.4 32 9-43 14-45 (260)
394 3f6r_A Flavodoxin; FMN binding 21.9 1.2E+02 0.004 22.2 4.6 36 9-44 3-39 (148)
395 3d3k_A Enhancer of mRNA-decapp 21.9 61 0.0021 27.1 3.2 34 8-44 86-121 (259)
396 4ao6_A Esterase; hydrolase, th 21.7 73 0.0025 26.1 3.7 38 7-44 55-94 (259)
397 3sc4_A Short chain dehydrogena 21.6 1.1E+02 0.0036 25.7 4.7 35 7-44 8-42 (285)
398 1yb4_A Tartronic semialdehyde 21.6 73 0.0025 26.7 3.7 31 7-42 3-33 (295)
399 4eg0_A D-alanine--D-alanine li 21.5 1.5E+02 0.005 25.3 5.7 38 7-44 13-54 (317)
400 1xfi_A Unknown protein; struct 21.4 1E+02 0.0035 27.3 4.6 35 8-42 213-248 (367)
401 3itj_A Thioredoxin reductase 1 21.4 50 0.0017 28.2 2.6 33 7-44 22-54 (338)
402 3dqp_A Oxidoreductase YLBE; al 21.4 55 0.0019 26.0 2.8 20 24-43 13-32 (219)
403 3d1l_A Putative NADP oxidoredu 21.4 40 0.0014 28.0 1.9 38 1-43 4-42 (266)
404 3t8y_A CHEB, chemotaxis respon 21.4 1E+02 0.0036 22.9 4.3 37 113-149 65-107 (164)
405 4fbl_A LIPS lipolytic enzyme; 21.4 62 0.0021 26.9 3.2 31 10-41 54-84 (281)
406 4e5v_A Putative THUA-like prot 21.4 1.2E+02 0.0041 25.6 4.9 38 6-44 3-43 (281)
407 2z1n_A Dehydrogenase; reductas 21.3 1.9E+02 0.0064 23.6 6.2 32 9-43 8-39 (260)
408 3i6i_A Putative leucoanthocyan 21.3 99 0.0034 26.6 4.6 35 7-45 10-44 (346)
409 2dtx_A Glucose 1-dehydrogenase 21.2 1.1E+02 0.0037 25.3 4.6 32 9-43 9-40 (264)
410 2b8t_A Thymidine kinase; deoxy 21.1 1.3E+02 0.0044 24.4 4.9 40 6-45 10-50 (223)
411 2qyt_A 2-dehydropantoate 2-red 21.1 41 0.0014 28.7 2.0 32 7-43 8-45 (317)
412 2zbw_A Thioredoxin reductase; 21.1 66 0.0022 27.5 3.4 34 6-44 4-37 (335)
413 2v3c_C SRP54, signal recogniti 21.1 92 0.0031 28.3 4.4 39 8-46 100-138 (432)
414 3jx9_A Putative phosphoheptose 21.0 88 0.003 24.2 3.7 26 19-44 88-113 (170)
415 3imf_A Short chain dehydrogena 21.0 1.1E+02 0.0037 25.1 4.6 32 8-42 6-37 (257)
416 4hn9_A Iron complex transport 21.0 84 0.0029 27.1 4.0 38 111-149 109-146 (335)
417 4e08_A DJ-1 beta; flavodoxin-l 20.9 2E+02 0.0067 22.2 5.9 38 7-45 5-42 (190)
418 3bre_A Probable two-component 20.9 1.2E+02 0.0041 26.1 5.1 36 115-150 59-103 (358)
419 3j20_B 30S ribosomal protein S 20.9 90 0.0031 25.0 3.7 32 119-150 111-144 (202)
420 4b79_A PA4098, probable short- 20.8 1.3E+02 0.0045 24.7 5.0 34 7-43 10-43 (242)
421 3k9g_A PF-32 protein; ssgcid, 20.8 84 0.0029 25.9 3.9 39 7-46 26-66 (267)
422 3zq6_A Putative arsenical pump 20.7 1.8E+02 0.0061 24.9 6.1 38 8-45 14-52 (324)
423 1ooe_A Dihydropteridine reduct 20.7 1.1E+02 0.0036 24.7 4.4 32 9-43 4-35 (236)
424 2q62_A ARSH; alpha/beta, flavo 20.7 1.7E+02 0.0057 24.1 5.6 38 6-43 33-73 (247)
425 2hy5_A Putative sulfurtransfer 20.7 98 0.0034 22.4 3.8 26 19-44 15-41 (130)
426 2q7v_A Thioredoxin reductase; 20.6 80 0.0027 26.8 3.8 39 1-44 1-40 (325)
427 3k96_A Glycerol-3-phosphate de 20.6 63 0.0022 28.4 3.2 33 7-44 29-61 (356)
428 1imj_A CIB, CCG1-interacting f 20.4 1.9E+02 0.0064 22.0 5.8 34 10-43 34-69 (210)
429 2a5l_A Trp repressor binding p 20.4 1.5E+02 0.0051 22.9 5.2 38 7-44 5-43 (200)
430 1ydg_A Trp repressor binding p 20.4 1.6E+02 0.0053 23.2 5.3 39 6-44 5-44 (211)
431 1vl0_A DTDP-4-dehydrorhamnose 20.3 64 0.0022 26.9 3.1 20 24-43 25-44 (292)
432 1g3q_A MIND ATPase, cell divis 20.3 1.3E+02 0.0043 24.1 4.8 36 10-45 5-41 (237)
433 3l4e_A Uncharacterized peptida 20.3 1.4E+02 0.0047 23.9 4.9 48 274-321 16-63 (206)
434 3v2h_A D-beta-hydroxybutyrate 20.3 1E+02 0.0035 25.7 4.3 32 9-43 26-57 (281)
435 3dhn_A NAD-dependent epimerase 20.1 65 0.0022 25.6 2.9 33 8-44 5-37 (227)
436 2woo_A ATPase GET3; tail-ancho 20.1 1.7E+02 0.0057 25.2 5.8 38 9-46 20-58 (329)
437 3cmw_A Protein RECA, recombina 20.1 2.9E+02 0.0099 30.1 8.4 43 8-50 733-775 (1706)
438 1oi4_A Hypothetical protein YH 20.1 2.4E+02 0.0083 21.8 6.3 38 7-45 23-60 (193)
439 3h7a_A Short chain dehydrogena 20.1 1.7E+02 0.0059 23.8 5.7 33 8-43 7-39 (252)
No 1
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=100.00 E-value=6.4e-51 Score=380.51 Aligned_cols=327 Identities=28% Similarity=0.459 Sum_probs=246.9
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRG--VKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGC 82 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rG--h~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (367)
.++.||+++|+|++||++||++||+.|++|| +.||++++..+..++.+... ....+++|+.++ ++++++.
T Consensus 11 ~~~~hvv~~P~p~~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~~~~~~~~~~~---~~~~~i~~~~ip-----dglp~~~ 82 (454)
T 3hbf_A 11 NNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSN---EFLPNIKYYNVH-----DGLPKGY 82 (454)
T ss_dssp -CCCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSSS---CCCTTEEEEECC-----CCCCTTC
T ss_pred CCCCEEEEEcCCcccHHHHHHHHHHHHHhCCCCEEEEEEeCHHHHHhhhcccc---cCCCCceEEecC-----CCCCCCc
Confidence 3478999999999999999999999999999 99999998643322221100 002358888886 4677655
Q ss_pred CcccccchhhhHHHHHHHHHHH-HhhHHHHHHHhhh--CCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhh
Q 041444 83 ENLDAITNEVNKELIVKFLGAT-TKLQEPLEQLLRD--HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNC 159 (367)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~--~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 159 (367)
+.... .. ..+..+.+.+ ..+.+.+++++++ .++||||+|.|+.|+.++|+++|||++.||+++++.+..+++
T Consensus 83 ~~~~~-~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~ 157 (454)
T 3hbf_A 83 VSSGN-PR----EPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVY 157 (454)
T ss_dssp CCCSC-TT----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHT
T ss_pred cccCC-hH----HHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHh
Confidence 43322 11 3444455444 3456667666554 579999999999999999999999999999999999888777
Q ss_pred hhhhcCC-CC-CCCCCCce-ecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHhhhccceEEecccccccHHHHH
Q 041444 160 LRLYEPH-KK-VSSDSEPF-VMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESESRSYGVAVNSFYELEPAYAD 236 (367)
Q Consensus 160 ~~~~~~~-~~-~~~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~ 236 (367)
++..... .. ...++... .+||+|. ++.+++|.++.. .....+..++.+..+...+++++++|||++||+++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~iPg~p~---~~~~dlp~~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~ 233 (454)
T 3hbf_A 158 TDLIREKTGSKEVHDVKSIDVLPGFPE---LKASDLPEGVIK-DIDVPFATMLHKMGLELPRANAVAINSFATIHPLIEN 233 (454)
T ss_dssp HHHHHHTCCHHHHTTSSCBCCSTTSCC---BCGGGSCTTSSS-CTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHH
T ss_pred hHHHHhhcCCCccccccccccCCCCCC---cChhhCchhhcc-CCchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHH
Confidence 6543211 00 00112233 4899975 788999987211 1222344566666777888999999999999999999
Q ss_pred HHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCC
Q 041444 237 HYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLEASGR 316 (367)
Q Consensus 237 ~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~~~ 316 (367)
++++.. +++++|||++...... ....+.+|.+|||++++++||||||||+..++.+++++++.||+++++
T Consensus 234 ~~~~~~-~~v~~vGPl~~~~~~~---------~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~ 303 (454)
T 3hbf_A 234 ELNSKF-KLLLNVGPFNLTTPQR---------KVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGF 303 (454)
T ss_dssp HHHTTS-SCEEECCCHHHHSCCS---------CCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCC
T ss_pred HHHhcC-CCEEEECCcccccccc---------cccchHHHHHHHhcCCCCceEEEecCCCCcCCHHHHHHHHHHHHhCCC
Confidence 888755 7999999998643211 011356799999999889999999999999999999999999999999
Q ss_pred cEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 317 NFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 317 ~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
+|||+++.+.. +.+|++|.+++.+||+++ +|+||.+||+|++
T Consensus 304 ~flw~~~~~~~--------~~lp~~~~~~~~~~~~vv-~w~Pq~~vL~h~~ 345 (454)
T 3hbf_A 304 PFIWSFRGDPK--------EKLPKGFLERTKTKGKIV-AWAPQVEILKHSS 345 (454)
T ss_dssp CEEEECCSCHH--------HHSCTTHHHHTTTTEEEE-SSCCHHHHHHSTT
T ss_pred eEEEEeCCcch--------hcCCHhHHhhcCCceEEE-eeCCHHHHHhhcC
Confidence 99999986421 148999999999999999 9999999999986
No 2
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=100.00 E-value=9e-45 Score=344.27 Aligned_cols=337 Identities=25% Similarity=0.400 Sum_probs=228.7
Q ss_pred CCCCCccEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCCC--cchhhhhHhhhhhcCCCcceeeeeCCCccCCC
Q 041444 2 GSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTPAN--APYVSKSVERANELGIELDVKTIKFPSVEAGL 78 (367)
Q Consensus 2 ~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~r-Gh~Vt~~t~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (367)
++..++.||+++|+|++||++|+++||++|++| ||+||++++... ...+.+... ....+++|+.++.. ..
T Consensus 1 M~~~~~~~vl~~p~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~~~~~~~~~~~~~---~~~~~i~~~~l~~~----~~ 73 (480)
T 2vch_A 1 MEESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLD---SLPSSISSVFLPPV----DL 73 (480)
T ss_dssp -----CCEEEEECCSCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSSCC-CHHHHHC----CCTTEEEEECCCC----CC
T ss_pred CCCCCCcEEEEecCcchhHHHHHHHHHHHHHhCCCCEEEEEECCCcchhhhhhhhcc---ccCCCceEEEcCCC----CC
Confidence 033456899999999999999999999999998 999999998863 222222100 00236888888632 11
Q ss_pred CCCCCcccccchhhhHHHHHHHHHHHHhhHHHHHHHhhh----CCC-CEEEecCCCccHHHHHHHhCCCeEEEecchhhH
Q 041444 79 PDGCENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRD----HKP-DCLVADIFFPWATDAAAKFGIPRLVFHGTSFFS 153 (367)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~-D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 153 (367)
++. ... . .....+......+.+.+++++++ .++ ||||+|.++.|+..+|+++|+|+|.++++++..
T Consensus 74 ~~~-~~~---~-----~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~ 144 (480)
T 2vch_A 74 TDL-SSS---T-----RIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANV 144 (480)
T ss_dssp TTS-CTT---C-----CHHHHHHHHHHTTHHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHH
T ss_pred CCC-CCc---h-----hHHHHHHHHHHhhhHHHHHHHHHhccCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHH
Confidence 111 110 0 11222333344455666666654 478 999999999999999999999999999999887
Q ss_pred HHHHhhhhhhcC--CCCCCCCCCceecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHhhhccceEEeccccccc
Q 041444 154 LCASNCLRLYEP--HKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESESRSYGVAVNSFYELE 231 (367)
Q Consensus 154 ~~~~~~~~~~~~--~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le 231 (367)
...+++++.... .......+....+|++++ ++..+++..+ ..........+.+....++++.++++||+.+||
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~p---~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~nt~~ele 219 (480)
T 2vch_A 145 LSFFLHLPKLDETVSCEFRELTEPLMLPGCVP---VAGKDFLDPA--QDRKDDAYKWLLHNTKRYKEAEGILVNTFFELE 219 (480)
T ss_dssp HHHHHHHHHHHHHCCSCGGGCSSCBCCTTCCC---BCGGGSCGGG--SCTTSHHHHHHHHHHHHGGGCSEEEESCCTTTS
T ss_pred HHHHHHHHHHHhcCCCcccccCCcccCCCCCC---CChHHCchhh--hcCCchHHHHHHHHHHhcccCCEEEEcCHHHHh
Confidence 766665553210 000000022345677764 5566676552 221112222333445556788999999999999
Q ss_pred HHHHHHHHHhc--CCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHH
Q 041444 232 PAYADHYRKAL--GRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIAT 309 (367)
Q Consensus 232 ~~~~~~~~~~~--~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~ 309 (367)
.+++..+.+.. .+++++|||++...... ..+.++.+|.+|||++++++||||||||+..++.++++++++
T Consensus 220 ~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~--------~~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~~~~~~~~ 291 (480)
T 2vch_A 220 PNAIKALQEPGLDKPPVYPVGPLVNIGKQE--------AKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELAL 291 (480)
T ss_dssp HHHHHHHHSCCTTCCCEEECCCCCCCSCSC--------C-----CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCcEEEEeccccccccc--------cCccchhHHHHHhcCCCCCceEEEecccccCCCHHHHHHHHH
Confidence 98877776421 26899999998643110 001256789999999888999999999999999999999999
Q ss_pred HHHhCCCcEEEEEecCCCCC--------CCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 310 GLEASGRNFIWVVRKNKNDG--------GEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 310 al~~~~~~~lW~~~~~~~~~--------~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
||++++++|||+++.....+ ++.+..+.+|+||+||++++|+++.+|+||.+||+|++
T Consensus 292 al~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~Pq~~vL~h~~ 357 (480)
T 2vch_A 292 GLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPS 357 (480)
T ss_dssp HHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHTTTTEEEEESCCCHHHHHHSTT
T ss_pred HHHhcCCcEEEEECCccccccccccccccccchhhhcCHHHHHHhCCCeEEEeCccCHHHHhCCCC
Confidence 99999999999998643100 00112224899999999999999967999999999985
No 3
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=100.00 E-value=1.8e-44 Score=343.14 Aligned_cols=344 Identities=26% Similarity=0.462 Sum_probs=225.1
Q ss_pred CCCC-CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcC-CCcceeeeeCCCccCCC
Q 041444 1 MGSK-IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELG-IELDVKTIKFPSVEAGL 78 (367)
Q Consensus 1 m~~~-~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (367)
|+.. +++.||+++|+|++||++||++||++|++|||+|||+++..+...+.+........+ .+++|+.++ +++
T Consensus 1 ~~~~~~~~~~vl~~p~p~~GHi~P~l~La~~L~~rG~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~-----~~l 75 (482)
T 2pq6_A 1 MGNFANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIP-----DGL 75 (482)
T ss_dssp -------CCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHC------------CEEEEEEC-----CCC
T ss_pred CCcccCCCCEEEEecCccchhHHHHHHHHHHHHhCCCeEEEEeCCchhhhhccccccccccCCCceEEEECC-----CCC
Confidence 4444 346799999999999999999999999999999999998754433322110000001 268888886 244
Q ss_pred CCCCCcccccchhhhHHHHHHHHHHH-HhhHHHHHHHhhh-------CCCCEEEecCCCccHHHHHHHhCCCeEEEecch
Q 041444 79 PDGCENLDAITNEVNKELIVKFLGAT-TKLQEPLEQLLRD-------HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTS 150 (367)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~-------~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~ 150 (367)
+.......... . +..+...+ ..+.+.++++++. .++||||+|.++.|+..+|+++|||+|.+++++
T Consensus 76 p~~~~~~~~~~-----~-~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~ 149 (482)
T 2pq6_A 76 TPMEGDGDVSQ-----D-VPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSS 149 (482)
T ss_dssp C---------C-----C-HHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSC
T ss_pred CCcccccCcch-----h-HHHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEeccc
Confidence 43110000000 1 11223333 3445555665552 489999999999999999999999999999999
Q ss_pred hhHHHHHhhhhhh-----cCCCCCC--CC---CCc-eecCCCCCcccccccCCCcccccCCC---ChhHHHHHHHHHHhh
Q 041444 151 FFSLCASNCLRLY-----EPHKKVS--SD---SEP-FVMPHFPGEIKLTRNQLPDFVKQDMG---DNDLSRLLKATNESE 216 (367)
Q Consensus 151 ~~~~~~~~~~~~~-----~~~~~~~--~~---~~~-~~~p~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 216 (367)
+.....+.+++.. .+..... .. +.. ..+|+++. +...+++.+ ... ...+..++....+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~ 223 (482)
T 2pq6_A 150 ACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWIPGLKN---FRLKDIVDF---IRTTNPNDIMLEFFIEVADRV 223 (482)
T ss_dssp HHHHHHHTTHHHHHHTTCSSCSSGGGGTSSGGGCBCCSSTTCCS---CBGGGSCGG---GCCSCTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCCCCCccccccccccccCccccCCCCCC---CchHHCchh---hccCCcccHHHHHHHHHHHhh
Confidence 8776555443321 1111000 00 111 13566653 555667665 321 122334444555667
Q ss_pred hccceEEecccccccHHHHHHHHHhcCCceEEeCcCCCC-CcCchhhhhcC--CCCCcchHHHhhhhcCCCCCcEEEEec
Q 041444 217 SRSYGVAVNSFYELEPAYADHYRKALGRRAWHIGPVSLC-NRNFEDKALRG--KQASIDELECLKWLNSKQPNSVVYICF 293 (367)
Q Consensus 217 ~~~~~~l~nt~~~le~~~~~~~~~~~~~~v~~vGpl~~~-~~~~~~~~~~~--~~~~~~~~~l~~wLd~~~~~~vIyvsf 293 (367)
.+++++++||+.+||+++++++++.+ +++++|||++.. +.....+..+. ...+..+.+|.+|||++++++||||||
T Consensus 224 ~~~~~vl~nt~~~le~~~~~~~~~~~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~~~~~vv~vs~ 302 (482)
T 2pq6_A 224 NKDTTILLNTFNELESDVINALSSTI-PSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNF 302 (482)
T ss_dssp CTTCCEEESSCGGGGHHHHHHHHTTC-TTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEEC
T ss_pred ccCCEEEEcChHHHhHHHHHHHHHhC-CcEEEEcCCcccccccccccccccccccccccchHHHHHHhcCCCCceEEEec
Confidence 78899999999999999998888766 899999999763 21100000000 011123457999999988899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 294 GSLANFTSAQLMEIATGLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 294 GS~~~~~~~~~~~~~~al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
||+..++.+++.+++++|++++++|||+++.+... +.. ..+|++|.+++.++|+++ +|+||.+||+||+
T Consensus 303 GS~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~---~~~-~~l~~~~~~~~~~~~~v~-~~~pq~~~L~h~~ 371 (482)
T 2pq6_A 303 GSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVI---GGS-VIFSSEFTNEIADRGLIA-SWCPQDKVLNHPS 371 (482)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTTCEEEEECCGGGST---TTG-GGSCHHHHHHHTTTEEEE-SCCCHHHHHTSTT
T ss_pred CCcccCCHHHHHHHHHHHHhcCCcEEEEEcCCccc---ccc-ccCcHhHHHhcCCCEEEE-eecCHHHHhcCCC
Confidence 99998899999999999999999999999864211 011 138999999999999999 8999999999985
No 4
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=100.00 E-value=6.2e-44 Score=337.22 Aligned_cols=328 Identities=26% Similarity=0.388 Sum_probs=233.0
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCcc-hhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANAP-YVSKSVERANELGIELDVKTIKFPSVEAGLPDGC 82 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~r--Gh~Vt~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (367)
++.||+++|+|++||++|+++||++|++| ||+|||+++..... .+.+.+........+++|+.++.. .++. .
T Consensus 8 ~~~~vv~~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~----~~~~-~ 82 (463)
T 2acv_A 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDLPEV----EPPP-Q 82 (463)
T ss_dssp HCEEEEEECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEECCCC----CCCC-G
T ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhcccCCCCceEEECCCC----CCCc-c
Confidence 46899999999999999999999999999 99999999886532 122222110111246888888631 1222 1
Q ss_pred CcccccchhhhHHHHHHHHHHHHhhHHHHHHHhhh---CCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhh
Q 041444 83 ENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRD---HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNC 159 (367)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 159 (367)
+... .. ... +...+..+.+.+++++++ .++||||+|.++.|+..+|+++|||++.+++++++.+..+++
T Consensus 83 ~~~~---~~---~~~--~~~~~~~~~~~~~~ll~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~ 154 (463)
T 2acv_A 83 ELLK---SP---EFY--ILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLS 154 (463)
T ss_dssp GGGG---SH---HHH--HHHHHHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHH
T ss_pred cccC---Cc---cHH--HHHHHHhhhHHHHHHHHhccCCCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHHH
Confidence 1011 11 212 444445556677777776 689999999999999999999999999999999988776666
Q ss_pred hhhhcCCCCCCCCCC---ceecCCC-CCcccccccCCCcccccCCCChhHHHHHHHHHHhhhccceEEecccccccHHHH
Q 041444 160 LRLYEPHKKVSSDSE---PFVMPHF-PGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESESRSYGVAVNSFYELEPAYA 235 (367)
Q Consensus 160 ~~~~~~~~~~~~~~~---~~~~p~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~ 235 (367)
++...........+. ...+||+ +. ++.++++..+ ....+ +...+.+..+..++++++++|||++||++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~pg~~~~---~~~~~l~~~~--~~~~~-~~~~~~~~~~~~~~~~~~l~nt~~ele~~~~ 228 (463)
T 2acv_A 155 LKNRQIEEVFDDSDRDHQLLNIPGISNQ---VPSNVLPDAC--FNKDG-GYIAYYKLAERFRDTKGIIVNTFSDLEQSSI 228 (463)
T ss_dssp GGGSCTTCCCCCSSGGGCEECCTTCSSC---EEGGGSCHHH--HCTTT-HHHHHHHHHHHHTTSSEEEESCCHHHHHHHH
T ss_pred HHhhcccCCCCCccccCceeECCCCCCC---CChHHCchhh--cCCch-HHHHHHHHHHhcccCCEEEECCHHHHhHHHH
Confidence 654321111111122 3457887 53 5666666442 11112 2223334445567888999999999999988
Q ss_pred HHHHHhc--CCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCC-CCCHHHHHHHHHHHH
Q 041444 236 DHYRKAL--GRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLA-NFTSAQLMEIATGLE 312 (367)
Q Consensus 236 ~~~~~~~--~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~-~~~~~~~~~~~~al~ 312 (367)
+.+.+.. .+++++|||++........ ...+.++.+|.+|||++++++||||||||+. .++.+++++++++|+
T Consensus 229 ~~l~~~~~p~~~v~~vGpl~~~~~~~~~-----~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~ 303 (463)
T 2acv_A 229 DALYDHDEKIPPIYAVGPLLDLKGQPNP-----KLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLK 303 (463)
T ss_dssp HHHHHHCTTSCCEEECCCCCCSSCCCBT-----TBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHH
T ss_pred HHHHhccccCCcEEEeCCCccccccccc-----ccccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHHHHHHH
Confidence 8777644 5799999999864310100 0001246789999999888999999999999 889999999999999
Q ss_pred hCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhh--CCCceEecCcccHHHhhcCCC
Q 041444 313 ASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRM--EGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 313 ~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~--~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
+++++|||+++.+. +.+|++|.+++ .++|+++ +|+||.+||+||+
T Consensus 304 ~~~~~~l~~~~~~~---------~~l~~~~~~~~~~~~~~~v~-~w~pq~~vL~h~~ 350 (463)
T 2acv_A 304 HSGVRFLWSNSAEK---------KVFPEGFLEWMELEGKGMIC-GWAPQVEVLAHKA 350 (463)
T ss_dssp HHTCEEEEECCCCG---------GGSCTTHHHHHHHHCSEEEE-SSCCHHHHHHSTT
T ss_pred hCCCcEEEEECCCc---------ccCChhHHHhhccCCCEEEE-ccCCHHHHhCCCc
Confidence 99999999997531 13788998888 8899999 7999999999985
No 5
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=100.00 E-value=9.3e-44 Score=335.20 Aligned_cols=332 Identities=26% Similarity=0.423 Sum_probs=224.2
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCe--EEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVK--ASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGL 78 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~--Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (367)
|...+++.||+++|+|++||++|+++||++|++|||+ ||++++......+.+... . ....+++|+.++ +++
T Consensus 1 m~~~~~~~hvv~~p~p~~GHi~P~l~la~~L~~rGh~v~vt~~~t~~~~~~~~~~~~-~-~~~~~i~~~~i~-----~gl 73 (456)
T 2c1x_A 1 MSQTTTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSM-H-TMQCNIKSYDIS-----DGV 73 (456)
T ss_dssp ------CCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHHC---------CTTEEEEECC-----CCC
T ss_pred CCCCCCCCEEEEEcCcccchHHHHHHHHHHHHhCCCCeEEEEEeCchhHHHhhcccc-c-cCCCceEEEeCC-----CCC
Confidence 6666677899999999999999999999999999765 577877532222111100 0 001357887775 345
Q ss_pred CCCCCcccccchhhhHHHHHHHHHHH-HhhHHHHHHHhhh--CCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHH
Q 041444 79 PDGCENLDAITNEVNKELIVKFLGAT-TKLQEPLEQLLRD--HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLC 155 (367)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~--~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 155 (367)
+++.+... .. . ..+..+...+ ..+.+.+++++++ .++||||+|.++.|+..+|+++|||+|.|++++++.+.
T Consensus 74 p~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~l~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~ 148 (456)
T 2c1x_A 74 PEGYVFAG-RP-Q---EDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLS 148 (456)
T ss_dssp CTTCCCCC-CT-T---HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHH
T ss_pred CCcccccC-Ch-H---HHHHHHHHHhHHHHHHHHHHHHhccCCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHH
Confidence 54432111 11 1 3334444433 2344555555433 58999999999999999999999999999999987765
Q ss_pred HHhhhhhh----cCCCCCCCCCC-ceecCCCCCcccccccCCCcccccCCC-ChhHHHHHHHHHHhhhccceEEeccccc
Q 041444 156 ASNCLRLY----EPHKKVSSDSE-PFVMPHFPGEIKLTRNQLPDFVKQDMG-DNDLSRLLKATNESESRSYGVAVNSFYE 229 (367)
Q Consensus 156 ~~~~~~~~----~~~~~~~~~~~-~~~~p~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~nt~~~ 229 (367)
.+.+.+.. ........... ..++||++. ++.+++|..+. ... ...+..++.+..+...+++++++||+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~---~~~~~lp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~~ 224 (456)
T 2c1x_A 149 THVYIDEIREKIGVSGIQGREDELLNFIPGMSK---VRFRDLQEGIV-FGNLNSLFSRMLHRMGQVLPKATAVFINSFEE 224 (456)
T ss_dssp HHHTHHHHHHHHCSSCCTTCTTCBCTTSTTCTT---CBGGGSCTTTS-SSCTTSHHHHHHHHHHHHGGGSSCEEESSCGG
T ss_pred HHhhhHHHHhccCCcccccccccccccCCCCCc---ccHHhCchhhc-CCCcccHHHHHHHHHHHhhhhCCEEEECChHH
Confidence 54433321 10000000111 235788775 56677776421 111 1123344445555567889999999999
Q ss_pred ccHHHHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHH
Q 041444 230 LEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIAT 309 (367)
Q Consensus 230 le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~ 309 (367)
||.++++++++.+ +++++|||++...... ....+.+|.+|||.+++++||||||||+...+.++++++++
T Consensus 225 le~~~~~~~~~~~-~~~~~vGpl~~~~~~~---------~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~ 294 (456)
T 2c1x_A 225 LDDSLTNDLKSKL-KTYLNIGPFNLITPPP---------VVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSE 294 (456)
T ss_dssp GCHHHHHHHHHHS-SCEEECCCHHHHC------------------CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHH
T ss_pred HhHHHHHHHHhcC-CCEEEecCcccCcccc---------cccchhhHHHHHhcCCCcceEEEecCccccCCHHHHHHHHH
Confidence 9999888888766 7899999997643210 01124569999999888999999999999888999999999
Q ss_pred HHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 310 GLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 310 al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
+|++++++|||+++.+.. . .+|++|.+++.++|+++ +|+||.+||+|++
T Consensus 295 ~l~~~~~~~lw~~~~~~~-------~-~l~~~~~~~~~~~~~v~-~w~pq~~vL~h~~ 343 (456)
T 2c1x_A 295 ALEASRVPFIWSLRDKAR-------V-HLPEGFLEKTRGYGMVV-PWAPQAEVLAHEA 343 (456)
T ss_dssp HHHHHTCCEEEECCGGGG-------G-GSCTTHHHHHTTTEEEE-SCCCHHHHHTSTT
T ss_pred HHHhcCCeEEEEECCcch-------h-hCCHHHHhhcCCceEEe-cCCCHHHHhcCCc
Confidence 999999999999976421 1 48899999999999999 8999999999985
No 6
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.96 E-value=2.3e-27 Score=222.39 Aligned_cols=299 Identities=17% Similarity=0.157 Sum_probs=180.4
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcc
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENL 85 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (367)
.++||++++++++||++|+++|+++|++|||+||++++....+.+.+ .+++|+.++. +++......
T Consensus 11 ~~~~Il~~~~~~~GHv~p~l~la~~L~~~Gh~V~~~~~~~~~~~~~~---------~g~~~~~~~~-----~~~~~~~~~ 76 (424)
T 2iya_A 11 TPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKA---------AGATPVVYDS-----ILPKESNPE 76 (424)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHH---------HTCEEEECCC-----CSCCTTCTT
T ss_pred ccceEEEEeCCCCcccchHHHHHHHHHHCCCeEEEEeCHHHHHHHHh---------CCCEEEecCc-----cccccccch
Confidence 45799999999999999999999999999999999998754332222 2467776652 222211100
Q ss_pred cccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhhhh-hhc
Q 041444 86 DAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLR-LYE 164 (367)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~-~~~ 164 (367)
...... ....+..+......+.+.+.+++++.++||||+|.+..|+..+|+++|+|+|.+++.+..... +.... ...
T Consensus 77 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~-~~~~~~~~~ 154 (424)
T 2iya_A 77 ESWPED-QESAMGLFLDEAVRVLPQLEDAYADDRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEG-FEEDVPAVQ 154 (424)
T ss_dssp CCCCSS-HHHHHHHHHHHHHHHHHHHHHHTTTSCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTT-HHHHSGGGS
T ss_pred hhcchh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEcCcccHHHHHHHhcCCCEEEEecccccccc-ccccccccc
Confidence 000000 002233333444455667888888889999999998889999999999999999987652211 10000 000
Q ss_pred CCCCCCCCCCceecCCCCCcccccccCCCcccccCCCCh---hHHHHHHHHHH----------hhhccceEEeccccccc
Q 041444 165 PHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDN---DLSRLLKATNE----------SESRSYGVAVNSFYELE 231 (367)
Q Consensus 165 ~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----------~~~~~~~~l~nt~~~le 231 (367)
. ........... |. ...+...+ ..... .+...+.+... .....+.+++|++.+++
T Consensus 155 ~--~~~~~~~~~~~---~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~l~ 222 (424)
T 2iya_A 155 D--PTADRGEEAAA---PA----GTGDAEEG---AEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQ 222 (424)
T ss_dssp C--CCC-------------------------------HHHHHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEESSCTTTS
T ss_pred c--ccccccccccc---cc----ccccchhh---hccchhHHHHHHHHHHHHHHcCCCCCHHHhccCCCcEEEEcchhhC
Confidence 0 00000000000 00 00000000 00000 01111111111 11245678899999988
Q ss_pred HHHHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHH
Q 041444 232 PAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGL 311 (367)
Q Consensus 232 ~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al 311 (367)
.+. ...++++++|||+..... ...+|++.++++++|||+|||......+.+.+++++|
T Consensus 223 ~~~-----~~~~~~~~~vGp~~~~~~-----------------~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al 280 (424)
T 2iya_A 223 IKG-----DTVGDNYTFVGPTYGDRS-----------------HQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAV 280 (424)
T ss_dssp TTG-----GGCCTTEEECCCCCCCCG-----------------GGCCCCCCCSSCCEEEEECCSSSCCCHHHHHHHHHHH
T ss_pred CCc-----cCCCCCEEEeCCCCCCcc-----------------cCCCCCccCCCCCEEEEEcCCCCcchHHHHHHHHHHH
Confidence 542 235678999999754211 1236887666788999999999876778899999999
Q ss_pred HhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 312 EASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 312 ~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
++.+.+|+|.++..... +.+. .+|+|+ .++ +|+||.++|+|.+
T Consensus 281 ~~~~~~~~~~~g~~~~~---~~~~-~~~~~v--------~~~-~~~~~~~~l~~~d 323 (424)
T 2iya_A 281 DGLDWHVVLSVGRFVDP---ADLG-EVPPNV--------EVH-QWVPQLDILTKAS 323 (424)
T ss_dssp TTCSSEEEEECCTTSCG---GGGC-SCCTTE--------EEE-SSCCHHHHHTTCS
T ss_pred hcCCcEEEEEECCcCCh---HHhc-cCCCCe--------EEe-cCCCHHHHHhhCC
Confidence 99889999988653211 1112 356674 555 9999999999864
No 7
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.93 E-value=2.8e-26 Score=213.29 Aligned_cols=271 Identities=15% Similarity=0.173 Sum_probs=153.3
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccC--CCCCCCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEA--GLPDGCE 83 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 83 (367)
+.+||+|+++|++||++|+++||++|++|||+|||+|+..... .. ..++.+..+....... ..+....
T Consensus 21 ~~MRIL~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~~~~~----~~------~~g~~~~~~~~~~~~~~~~~~~~~~ 90 (400)
T 4amg_A 21 QSMRALFITSPGLSHILPTVPLAQALRALGHEVRYATGGDIRA----VA------EAGLCAVDVSPGVNYAKLFVPDDTD 90 (400)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECSSTHH----HH------TTTCEEEESSTTCCSHHHHSCCC--
T ss_pred CCCeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEEeCcchhh----HH------hcCCeeEecCCchhHhhhccccccc
Confidence 5789999999999999999999999999999999999875432 11 1234444332100000 0000000
Q ss_pred ccc-----ccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHh
Q 041444 84 NLD-----AITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASN 158 (367)
Q Consensus 84 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 158 (367)
... ..... .....+..........+.+++++.+||+||+|.+..++..+|+++|+|++.++...........
T Consensus 91 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~ 167 (400)
T 4amg_A 91 VTDPMHSEGLGEG---FFAEMFARVSAVAVDGALRTARSWRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSEPGLG 167 (400)
T ss_dssp ----------CHH---HHHHHHHHHHHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCCHHHH
T ss_pred cccccchhhhhHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHcCCCceeecccccccccchh
Confidence 000 00000 1111122222334455666777889999999999999999999999999987554332111000
Q ss_pred hhhhhcCCCCCCCCCCceecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHhh----hccceEEecccccccHHH
Q 041444 159 CLRLYEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESE----SRSYGVAVNSFYELEPAY 234 (367)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~nt~~~le~~~ 234 (367)
.. ....+....+.. ........... .+.
T Consensus 168 ~~--------------------------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~ 199 (400)
T 4amg_A 168 AL--------------------------------------------IRRAMSKDYERHGVTGEPTGSVRLTTT----PPS 199 (400)
T ss_dssp HH--------------------------------------------HHHHTHHHHHHTTCCCCCSCEEEEECC----CHH
T ss_pred hH--------------------------------------------HHHHHHHHHHHhCCCcccccchhhccc----Cch
Confidence 00 000000111100 00000111100 000
Q ss_pred HHHH--HHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCC--HHHHHHHHHH
Q 041444 235 ADHY--RKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFT--SAQLMEIATG 310 (367)
Q Consensus 235 ~~~~--~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~--~~~~~~~~~a 310 (367)
.... .....+..+.+.+.... ....+.+||+.++++++|||||||+.... .+++.+++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~ 263 (400)
T 4amg_A 200 VEALLPEDRRSPGAWPMRYVPYN----------------GGAVLPDWLPPAAGRRRIAVTLGSIDALSGGIAKLAPLFSE 263 (400)
T ss_dssp HHHTSCGGGCCTTCEECCCCCCC----------------CCEECCTTCSCCTTCCEEEECCCSCC--CCSSSTTHHHHHH
T ss_pred hhccCcccccCCcccCccccccc----------------ccccCcccccccCCCcEEEEeCCcccccCccHHHHHHHHHH
Confidence 0000 00011233333333221 12223468998889999999999987543 4678899999
Q ss_pred HHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 311 LEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 311 l~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
+++++.+|+|..+..... .. ..+|+|+ +++ +|+||.++|+|.+
T Consensus 264 l~~~~~~~v~~~~~~~~~----~~-~~~~~~v--------~~~-~~~p~~~lL~~~~ 306 (400)
T 4amg_A 264 VADVDAEFVLTLGGGDLA----LL-GELPANV--------RVV-EWIPLGALLETCD 306 (400)
T ss_dssp GGGSSSEEEEECCTTCCC----CC-CCCCTTE--------EEE-CCCCHHHHHTTCS
T ss_pred hhccCceEEEEecCcccc----cc-ccCCCCE--------EEE-eecCHHHHhhhhh
Confidence 999999999998765321 22 2488886 555 9999999999964
No 8
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.92 E-value=1.8e-23 Score=195.33 Aligned_cols=279 Identities=15% Similarity=0.130 Sum_probs=161.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccc
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDA 87 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (367)
+||++++.++.||++|+++||++|++|||+||++++.... ..+. ..+++++.++... ....+....
T Consensus 1 M~Il~~~~~~~GHv~P~l~la~~L~~~Gh~V~~~~~~~~~----~~v~-----~~g~~~~~i~~~~-----~~~~~~~~~ 66 (415)
T 1iir_A 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCA----ERLA-----EVGVPHVPVGPSA-----RAPIQRAKP 66 (415)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGH----HHHH-----HTTCCEEECCC------------CCSC
T ss_pred CeEEEEcCCCchhHHHHHHHHHHHHHCCCeEEEEcCHHHH----HHHH-----HcCCeeeeCCCCH-----HHHhhcccc
Confidence 3899999999999999999999999999999999987532 2221 1357888776321 111110000
Q ss_pred cchhhhHHHHHHHHHHHHhhHHHHHHHhh-hCCCCEEEecC-CCcc--HHHHHHHhCCCeEEEecchhhHHHHHhhhhhh
Q 041444 88 ITNEVNKELIVKFLGATTKLQEPLEQLLR-DHKPDCLVADI-FFPW--ATDAAAKFGIPRLVFHGTSFFSLCASNCLRLY 163 (367)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~D~vi~D~-~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 163 (367)
... ..+..+... .....++++.+ ..+||+||+|. +..| +..+|+++|||+|.++++++.....
T Consensus 67 ~~~----~~~~~~~~~--~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~------- 133 (415)
T 1iir_A 67 LTA----EDVRRFTTE--AIATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSP------- 133 (415)
T ss_dssp CCH----HHHHHHHHH--HHHHHHHHHHHHTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCCS-------
T ss_pred cch----HHHHHHHHH--HHHHHHHHHHHHhcCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCcCCCc-------
Confidence 000 111111111 11233444443 46899999998 6678 8899999999999998876432110
Q ss_pred cCCCCCCCCCCceecCCCCCcccccccCCCcccccCC-CChh----HHHHHHHHHH------------hhhccceEEecc
Q 041444 164 EPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDM-GDND----LSRLLKATNE------------SESRSYGVAVNS 226 (367)
Q Consensus 164 ~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~------------~~~~~~~~l~nt 226 (367)
++|.....+.++.....+.+ ... .... +...+..... ..... .+++|+
T Consensus 134 -------------~~p~~~~~~~~~~~~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~l~~~ 198 (415)
T 1iir_A 134 -------------YYPPPPLGEPSTQDTIDIPA-QWERNNQSAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTD-HPWVAA 198 (415)
T ss_dssp -------------SSCCCC---------CHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCS-SCEECS
T ss_pred -------------ccCCccCCccccchHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHcCCCCCCccccccCCC-CEEEee
Confidence 01100000000000000000 000 0000 0000011110 01112 467888
Q ss_pred cccccH-HHHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHH
Q 041444 227 FYELEP-AYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLM 305 (367)
Q Consensus 227 ~~~le~-~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~ 305 (367)
+.+++. + +.. .++++|||++..... ..+.++.+|||++ +++|||||||+. .+.+.++
T Consensus 199 ~~~l~~~~-----~~~--~~~~~vG~~~~~~~~------------~~~~~~~~~l~~~--~~~v~v~~Gs~~-~~~~~~~ 256 (415)
T 1iir_A 199 DPVLAPLQ-----PTD--LDAVQTGAWILPDER------------PLSPELAAFLDAG--PPPVYLGFGSLG-APADAVR 256 (415)
T ss_dssp CTTTSCCC-----CCS--SCCEECCCCCCCCCC------------CCCHHHHHHHHTS--SCCEEEECC----CCHHHHH
T ss_pred ChhhcCCC-----ccc--CCeEeeCCCccCccc------------CCCHHHHHHHhhC--CCeEEEeCCCCC-CcHHHHH
Confidence 888874 2 111 279999998764221 2567899999874 479999999987 6677888
Q ss_pred HHHHHHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcC
Q 041444 306 EIATGLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDH 365 (367)
Q Consensus 306 ~~~~al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~H 365 (367)
+++++|++++.+|+|+.+.... +. ..+|+|+ .+.+|+||.++|++
T Consensus 257 ~~~~al~~~~~~~v~~~g~~~~-----~~-~~~~~~v---------~~~~~~~~~~~l~~ 301 (415)
T 1iir_A 257 VAIDAIRAHGRRVILSRGWADL-----VL-PDDGADC---------FAIGEVNHQVLFGR 301 (415)
T ss_dssp HHHHHHHHTTCCEEECTTCTTC-----CC-SSCGGGE---------EECSSCCHHHHGGG
T ss_pred HHHHHHHHCCCeEEEEeCCCcc-----cc-cCCCCCE---------EEeCcCChHHHHhh
Confidence 8999999999999998865421 11 1367774 44599999999864
No 9
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.91 E-value=1e-22 Score=191.05 Aligned_cols=293 Identities=18% Similarity=0.191 Sum_probs=167.7
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPD 80 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
|.+.|.+.||++++.++.||++|+++|+++|++|||+|+++++....+.+. ..+++++.++. .++.
T Consensus 1 M~~~m~m~kIl~~~~~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~~~~~~~---------~~g~~~~~~~~-----~~~~ 66 (430)
T 2iyf_A 1 MTTQTTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVA---------ATGPRPVLYHS-----TLPG 66 (430)
T ss_dssp -------CEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHH---------TTSCEEEECCC-----CSCC
T ss_pred CCCccccceEEEEeCCCCccccchHHHHHHHHHCCCeEEEEeCHHHHHHHH---------hCCCEEEEcCC-----cCcc
Confidence 666666789999999999999999999999999999999999874322111 23577776652 1121
Q ss_pred CCCcccccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhhh
Q 041444 81 GCENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCL 160 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 160 (367)
........... ....+..+...+..+...+.+++++.+||+||+|.+..++..+|+++|+|+|.+++...... .+...
T Consensus 67 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~-~~~~~ 144 (430)
T 2iyf_A 67 PDADPEAWGST-LLDNVEPFLNDAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWK-GYEEE 144 (430)
T ss_dssp TTSCGGGGCSS-HHHHHHHHHHHHHHHHHHHHHHHTTSCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCT-THHHH
T ss_pred ccccccccchh-hHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEECCccHHHHHHHHHcCCCEEEEeccccccc-ccccc
Confidence 11110000000 00222233333344556677888888999999998877888999999999999887653110 00000
Q ss_pred hhhcCCCCCCCCCCceecCCCCCcccccccCCCcccccCCCChhHHHHHHH------HHHhhhccceEEecccccccHHH
Q 041444 161 RLYEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKA------TNESESRSYGVAVNSFYELEPAY 234 (367)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~nt~~~le~~~ 234 (367)
+.. .. ... .. ..+.. ......+...+.+ ..+.....+.+++++..+++...
T Consensus 145 ~~~-----------~~-~~~------~~--~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 201 (430)
T 2iyf_A 145 VAE-----------PM-WRE------PR--QTERG---RAYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHA 201 (430)
T ss_dssp THH-----------HH-HHH------HH--HSHHH---HHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEECSCGGGSTTG
T ss_pred ccc-----------ch-hhh------hc--cchHH---HHHHHHHHHHHHHhCCCCCHHHHhcCCCcEEEeCcHHhCCCc
Confidence 000 00 000 00 00000 0000000111110 00111245678888888877431
Q ss_pred HHHHHHhcCCc-eEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHh
Q 041444 235 ADHYRKALGRR-AWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLEA 313 (367)
Q Consensus 235 ~~~~~~~~~~~-v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~~ 313 (367)
+.++++ +++|||.+.... +..+|++..+++++|||++||+.....+.+.++++++++
T Consensus 202 -----~~~~~~~v~~vG~~~~~~~-----------------~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~ 259 (430)
T 2iyf_A 202 -----DRVDEDVYTFVGACQGDRA-----------------EEGGWQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGN 259 (430)
T ss_dssp -----GGSCTTTEEECCCCC----------------------CCCCCCCTTCSEEEEEECTTTCC-CHHHHHHHHHHHTT
T ss_pred -----ccCCCccEEEeCCcCCCCC-----------------CCCCCccccCCCCeEEEEcCCCCCCcHHHHHHHHHHHhc
Confidence 234567 999998653211 012466655567899999999986567888999999988
Q ss_pred C-CCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCCC
Q 041444 314 S-GRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (367)
Q Consensus 314 ~-~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hpa 367 (367)
. +.+|+|.++..... +.+. .+++|+ .++ +|+||.++|+|..
T Consensus 260 ~~~~~~~~~~G~~~~~---~~l~-~~~~~v--------~~~-~~~~~~~~l~~ad 301 (430)
T 2iyf_A 260 LPGWHLVLQIGRKVTP---AELG-ELPDNV--------EVH-DWVPQLAILRQAD 301 (430)
T ss_dssp CTTEEEEEECC---CG---GGGC-SCCTTE--------EEE-SSCCHHHHHTTCS
T ss_pred CCCeEEEEEeCCCCCh---HHhc-cCCCCe--------EEE-ecCCHHHHhhccC
Confidence 6 78899988653211 1121 255564 555 9999999999863
No 10
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.90 E-value=2.2e-22 Score=188.03 Aligned_cols=279 Identities=14% Similarity=0.067 Sum_probs=163.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccc
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDA 87 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (367)
+||++++.++.||++|+++||++|++|||+||++++....+.+.. .+++++.++... .+.+..... ..
T Consensus 1 MrIl~~~~~~~GH~~p~l~la~~L~~~Gh~V~~~~~~~~~~~v~~---------~g~~~~~~~~~~-~~~~~~~~~--~~ 68 (416)
T 1rrv_A 1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAE---------VGVPHVPVGLPQ-HMMLQEGMP--PP 68 (416)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHH---------HTCCEEECSCCG-GGCCCTTSC--CC
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHH---------cCCeeeecCCCH-HHHHhhccc--cc
Confidence 389999999999999999999999999999999998743222222 247777776321 011111000 00
Q ss_pred cchhhhHHHHHHHHH-HHHhhHHHHHHHhhhCCCCEEEecC-CCcc--HHHHHHHhCCCeEEEecchhhHHHHHhhhhhh
Q 041444 88 ITNEVNKELIVKFLG-ATTKLQEPLEQLLRDHKPDCLVADI-FFPW--ATDAAAKFGIPRLVFHGTSFFSLCASNCLRLY 163 (367)
Q Consensus 88 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~D~vi~D~-~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 163 (367)
. . ..+..+.. ....+.+.+.+. ..+||+||+|. +..| +..+|+++|+|++.+++++......
T Consensus 69 ~-~----~~~~~~~~~~~~~~~~~l~~~--~~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~------- 134 (416)
T 1rrv_A 69 P-P----EEEQRLAAMTVEMQFDAVPGA--AEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASP------- 134 (416)
T ss_dssp C-H----HHHHHHHHHHHHHHHHHHHHH--TTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCCS-------
T ss_pred h-h----HHHHHHHHHHHHHHHHHHHHH--hcCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCCCCCCc-------
Confidence 0 0 11111111 112222222221 46899999997 4556 7889999999999988775432100
Q ss_pred cCCCCCCCCCCceecC-CCCCcccccccCCCcccccCCC-Ch-h----HHHHHHHHH------------HhhhccceEEe
Q 041444 164 EPHKKVSSDSEPFVMP-HFPGEIKLTRNQLPDFVKQDMG-DN-D----LSRLLKATN------------ESESRSYGVAV 224 (367)
Q Consensus 164 ~~~~~~~~~~~~~~~p-~~p~~~~~~~~~~~~~~~~~~~-~~-~----~~~~~~~~~------------~~~~~~~~~l~ 224 (367)
++| .++ +........+.+ ... .. . +...+.... +..... .+++
T Consensus 135 -------------~~p~~~~--~~~~~~r~~n~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~l~ 196 (416)
T 1rrv_A 135 -------------HLPPAYD--EPTTPGVTDIRV--LWEERAARFADRYGPTLNRRRAEIGLPPVEDVFGYGHGE-RPLL 196 (416)
T ss_dssp -------------SSCCCBC--SCCCTTCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTTCS-SCEE
T ss_pred -------------ccCCCCC--CCCCchHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHcCCCCCCchhhhccCC-CeEE
Confidence 011 000 000000000000 000 00 0 000001111 111222 5788
Q ss_pred cccccccHHHHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCC-CCHHH
Q 041444 225 NSFYELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLAN-FTSAQ 303 (367)
Q Consensus 225 nt~~~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~-~~~~~ 303 (367)
|+..+++++. . . .+++.|||++..... ..+.++.+|||++ +++|||+|||+.. ...+.
T Consensus 197 ~~~~~l~~~~-----~-~-~~~~~vG~~~~~~~~------------~~~~~~~~~l~~~--~~~v~v~~Gs~~~~~~~~~ 255 (416)
T 1rrv_A 197 AADPVLAPLQ-----P-D-VDAVQTGAWLLSDER------------PLPPELEAFLAAG--SPPVHIGFGSSSGRGIADA 255 (416)
T ss_dssp CSCTTTSCCC-----S-S-CCCEECCCCCCCCCC------------CCCHHHHHHHHSS--SCCEEECCTTCCSHHHHHH
T ss_pred ccCccccCCC-----C-C-CCeeeECCCccCccC------------CCCHHHHHHHhcC--CCeEEEecCCCCccChHHH
Confidence 8888887421 1 1 279999999764211 2567899999874 4799999999874 45677
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCC
Q 041444 304 LMEIATGLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHE 366 (367)
Q Consensus 304 ~~~~~~al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hp 366 (367)
+++++++|++++.+|+|+.+.... +. ..+|+|+ .++ +|+||.++|++.
T Consensus 256 ~~~~~~al~~~~~~~v~~~g~~~~-----~~-~~~~~~v--------~~~-~~~~~~~ll~~~ 303 (416)
T 1rrv_A 256 AKVAVEAIRAQGRRVILSRGWTEL-----VL-PDDRDDC--------FAI-DEVNFQALFRRV 303 (416)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTTC-----CC-SCCCTTE--------EEE-SSCCHHHHGGGS
T ss_pred HHHHHHHHHHCCCeEEEEeCCccc-----cc-cCCCCCE--------EEe-ccCChHHHhccC
Confidence 889999999999999999875421 11 1366774 455 999999999653
No 11
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.88 E-value=3.6e-21 Score=178.74 Aligned_cols=283 Identities=17% Similarity=0.178 Sum_probs=164.1
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcc
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENL 85 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (367)
.+.||++++.++.||++|+++|+++|++|||+|+++++....+.+. ..++++..++.... ... .....
T Consensus 3 ~M~~il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~~~~~~~~~---------~~G~~~~~~~~~~~--~~~-~~~~~ 70 (402)
T 3ia7_A 3 RQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVK---------AAGAEVVLYKSEFD--TFH-VPEVV 70 (402)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHH---------HTTCEEEECCCGGG--TSS-SSSSS
T ss_pred CCCEEEEEeCCCCcccccHHHHHHHHHhCCCEEEEEcCHHHHHHHH---------HcCCEEEecccccc--ccc-ccccc
Confidence 4569999999999999999999999999999999999753322221 13467776652110 000 00000
Q ss_pred cccchhhhHHHHHH-HHHHHHhhHHHHHHHhhhCCCCEEEec-CCCccHHHHHHHhCCCeEEEecchhhHHHHHhhhhhh
Q 041444 86 DAITNEVNKELIVK-FLGATTKLQEPLEQLLRDHKPDCLVAD-IFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLRLY 163 (367)
Q Consensus 86 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~D~vi~D-~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 163 (367)
...... ..+.. +......+...+.+.+++.+||+||+| .+..++..+|+++|+|+|.+++....... +...+..
T Consensus 71 ~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~-~~~~~~~ 146 (402)
T 3ia7_A 71 KQEDAE---TQLHLVYVRENVAILRAAEEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEH-YSLFKEL 146 (402)
T ss_dssp CCTTHH---HHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTT-BCHHHHH
T ss_pred cccchH---HHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCcc-ccccccc
Confidence 000001 22222 333333445667778888999999999 77778889999999999998654332100 0000000
Q ss_pred cCCCCCCCCCCceecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHh----------hhc-cceEEecccccccH
Q 041444 164 EPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNES----------ESR-SYGVAVNSFYELEP 232 (367)
Q Consensus 164 ~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~l~nt~~~le~ 232 (367)
. + ......+.. . ..+...+.+.... ... .+..+.....+++.
T Consensus 147 ~--------------~-------~~~~~~~~~---~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 199 (402)
T 3ia7_A 147 W--------------K-------SNGQRHPAD---V---EAVHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLPKSFQP 199 (402)
T ss_dssp H--------------H-------HHTCCCGGG---S---HHHHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSCGGGST
T ss_pred c--------------c-------cccccChhh---H---HHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcChHhCC
Confidence 0 0 000000000 0 0011111111100 011 13334443334332
Q ss_pred HHHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHH
Q 041444 233 AYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLE 312 (367)
Q Consensus 233 ~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~ 312 (367)
.....+.++.+|||...... ....|+...+++++|||++||......+.+.+++++++
T Consensus 200 -----~~~~~~~~~~~vGp~~~~~~-----------------~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~ 257 (402)
T 3ia7_A 200 -----FAETFDERFAFVGPTLTGRD-----------------GQPGWQPPRPDAPVLLVSLGNQFNEHPEFFRACAQAFA 257 (402)
T ss_dssp -----TGGGCCTTEEECCCCCCC---------------------CCCCCSSTTCCEEEEECCSCSSCCHHHHHHHHHHHT
T ss_pred -----ccccCCCCeEEeCCCCCCcc-----------------cCCCCcccCCCCCEEEEECCCCCcchHHHHHHHHHHHh
Confidence 12334577999999764321 12346555566789999999998777788999999999
Q ss_pred hCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCC
Q 041444 313 ASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHE 366 (367)
Q Consensus 313 ~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hp 366 (367)
+.+.+++|..++.... ..+. .+++|+ .++ +|+||.++|+|.
T Consensus 258 ~~~~~~~~~~g~~~~~---~~~~-~~~~~v--------~~~-~~~~~~~ll~~a 298 (402)
T 3ia7_A 258 DTPWHVVMAIGGFLDP---AVLG-PLPPNV--------EAH-QWIPFHSVLAHA 298 (402)
T ss_dssp TSSCEEEEECCTTSCG---GGGC-SCCTTE--------EEE-SCCCHHHHHTTE
T ss_pred cCCcEEEEEeCCcCCh---hhhC-CCCCcE--------EEe-cCCCHHHHHhhC
Confidence 9999999988754211 1122 356674 455 999999999874
No 12
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.87 E-value=2e-21 Score=181.49 Aligned_cols=280 Identities=15% Similarity=0.113 Sum_probs=166.4
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCc-
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCEN- 84 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 84 (367)
.+.||+|++.++.||++|+++|+++|++|||+|+++++....+.+.. .++++..++. .++.....
T Consensus 19 ~m~rIl~~~~~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~~~~~~~~---------~G~~~~~~~~-----~~~~~~~~~ 84 (415)
T 3rsc_A 19 HMAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRA---------AGATVVPYQS-----EIIDADAAE 84 (415)
T ss_dssp CCCEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHH---------TTCEEEECCC-----STTTCCHHH
T ss_pred cCCEEEEEeCCCccccccHHHHHHHHHHCCCEEEEEeCHHHHHHHHh---------cCCEEEeccc-----cccccccch
Confidence 46799999999999999999999999999999999997644332222 3477777652 11111000
Q ss_pred --ccccchhhhHHHHHH-HHHHHHhhHHHHHHHhhhCCCCEEEec-CCCccHHHHHHHhCCCeEEEecchhhHHHHHhhh
Q 041444 85 --LDAITNEVNKELIVK-FLGATTKLQEPLEQLLRDHKPDCLVAD-IFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCL 160 (367)
Q Consensus 85 --~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~D~vi~D-~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 160 (367)
...... ..+.. +......+...+.+++++.+||+||+| .+..++..+|+++|+|++.+.+...... .+...
T Consensus 85 ~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~-~~~~~ 159 (415)
T 3rsc_A 85 VFGSDDLG----VRPHLMYLRENVSVLRATAEALDGDVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNE-HYSFS 159 (415)
T ss_dssp HHHSSSSC----HHHHHHHHHHHHHHHHHHHHHHSSSCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCS-SCCHH
T ss_pred hhccccHH----HHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccC-ccccc
Confidence 000000 22222 333333445667778888999999999 7777888899999999999875432110 00000
Q ss_pred hhhcCCCCCCCCCCceecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHh----------hh-ccceEEeccccc
Q 041444 161 RLYEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNES----------ES-RSYGVAVNSFYE 229 (367)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~l~nt~~~ 229 (367)
+.. .+ ......+.. .. .+...+.+.... .. ..+..+.....+
T Consensus 160 ~~~--------------~~-------~~~~~~p~~---~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~ 212 (415)
T 3rsc_A 160 QDM--------------VT-------LAGTIDPLD---LP---VFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKA 212 (415)
T ss_dssp HHH--------------HH-------HHTCCCGGG---CH---HHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSCTT
T ss_pred ccc--------------cc-------ccccCChhh---HH---HHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCcc
Confidence 000 00 000000000 00 011111111110 01 114444444444
Q ss_pred ccHHHHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHH
Q 041444 230 LEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIAT 309 (367)
Q Consensus 230 le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~ 309 (367)
++. .+...+.++.++||...... +..+|+...+++++|||++||......+.+.++++
T Consensus 213 ~~~-----~~~~~~~~~~~vGp~~~~~~-----------------~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~ 270 (415)
T 3rsc_A 213 FQI-----AGDTFDDRFVFVGPCFDDRR-----------------FLGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCAR 270 (415)
T ss_dssp TST-----TGGGCCTTEEECCCCCCCCG-----------------GGCCCCCCSSCCCEEEEECTTTSCCCHHHHHHHHH
T ss_pred cCC-----CcccCCCceEEeCCCCCCcc-----------------cCcCccccCCCCCEEEEECCCCCCChHHHHHHHHH
Confidence 442 12334567999999764321 12346555566789999999998767788999999
Q ss_pred HHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCC
Q 041444 310 GLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHE 366 (367)
Q Consensus 310 al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hp 366 (367)
++++.+.+|+|..+..... +.+. .+|+|+ .++ +|+||.++|+|.
T Consensus 271 al~~~~~~~v~~~g~~~~~---~~l~-~~~~~v--------~~~-~~~~~~~ll~~a 314 (415)
T 3rsc_A 271 AFDGQPWHVVMTLGGQVDP---AALG-DLPPNV--------EAH-RWVPHVKVLEQA 314 (415)
T ss_dssp HHTTSSCEEEEECTTTSCG---GGGC-CCCTTE--------EEE-SCCCHHHHHHHE
T ss_pred HHhcCCcEEEEEeCCCCCh---HHhc-CCCCcE--------EEE-ecCCHHHHHhhC
Confidence 9999999999988754211 1122 366774 555 999999998763
No 13
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.85 E-value=1.3e-20 Score=175.26 Aligned_cols=271 Identities=13% Similarity=0.090 Sum_probs=155.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccc
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDA 87 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (367)
+||+|++.++.||++|+++|+++|.+|||+|+++++.... ..+. ..++++..++.... .. .......
T Consensus 1 MrIli~~~gt~Ghv~p~~~La~~L~~~Gh~V~v~~~~~~~----~~v~-----~~g~~~~~l~~~~~--~~-~~~~~~~- 67 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYV----ERCA-----EVGVPMVPVGRAVR--AG-AREPGEL- 67 (404)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEECGGGH----HHHH-----HTTCCEEECSSCSS--GG-GSCTTCC-
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHH----HHHH-----HcCCceeecCCCHH--HH-hccccCC-
Confidence 4799999999999999999999999999999999986432 2222 13577777752110 00 0000000
Q ss_pred cchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccH---HHHHHHhCCCeEEEecchhhHHHHHhhhhhhc
Q 041444 88 ITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWA---TDAAAKFGIPRLVFHGTSFFSLCASNCLRLYE 164 (367)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~---~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 164 (367)
.. .....+..........+.+++ .++|+||+|.....+ ..+|+++|||++.+..++......++... .
T Consensus 68 ~~-----~~~~~~~~~~~~~~~~l~~~~--~~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~~~~~~~~~~--~ 138 (404)
T 3h4t_A 68 PP-----GAAEVVTEVVAEWFDKVPAAI--EGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQAE--R 138 (404)
T ss_dssp CT-----TCGGGHHHHHHHHHHHHHHHH--TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGGSCHHH--H
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHh--cCCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCccCCChhHHHH--H
Confidence 00 001111222222333344443 369999998655443 68899999999987766542110000000 0
Q ss_pred CCCCCCCCCCceecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHhh-----------hccceEEecccccccHH
Q 041444 165 PHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESE-----------SRSYGVAVNSFYELEPA 233 (367)
Q Consensus 165 ~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~nt~~~le~~ 233 (367)
+ ..... . . ..+...+.+..... ...+..+.+....+.+.
T Consensus 139 ---------------~------~~~~~---~---~---~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~l~~~~~~l~p~ 188 (404)
T 3h4t_A 139 ---------------D------MYNQG---A---D---RLFGDAVNSHRASIGLPPVEHLYDYGYTDQPWLAADPVLSPL 188 (404)
T ss_dssp ---------------H------HHHHH---H---H---HHHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCC
T ss_pred ---------------H------HHHHH---H---H---HHhHHHHHHHHHHcCCCCCcchhhccccCCeEEeeCcceeCC
Confidence 0 00000 0 0 00000001000000 00111233444444321
Q ss_pred HHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHh
Q 041444 234 YADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLEA 313 (367)
Q Consensus 234 ~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~~ 313 (367)
+..+++++.+|+++.+... .+++++.+||+. .+++|||+|||+.. +.+.++.++++|++
T Consensus 189 ------~~~~~~~~~~G~~~~~~~~------------~~~~~l~~~l~~--~~~~Vlv~~Gs~~~-~~~~~~~~~~al~~ 247 (404)
T 3h4t_A 189 ------RPTDLGTVQTGAWILPDQR------------PLSAELEGFLRA--GSPPVYVGFGSGPA-PAEAARVAIEAVRA 247 (404)
T ss_dssp ------CTTCCSCCBCCCCCCCCCC------------CCCHHHHHHHHT--SSCCEEECCTTSCC-CTTHHHHHHHHHHH
T ss_pred ------CCCCCCeEEeCccccCCCC------------CCCHHHHHHHhc--CCCeEEEECCCCCC-cHHHHHHHHHHHHh
Confidence 1123578889987654321 267889999985 35799999999987 77888999999999
Q ss_pred CCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCC
Q 041444 314 SGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHE 366 (367)
Q Consensus 314 ~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hp 366 (367)
.+.+|||+.+.... +.. .+++|+ .++ +|+||.++|.+.
T Consensus 248 ~~~~vv~~~g~~~~-----~~~-~~~~~v--------~~~-~~~~~~~ll~~~ 285 (404)
T 3h4t_A 248 QGRRVVLSSGWAGL-----GRI-DEGDDC--------LVV-GEVNHQVLFGRV 285 (404)
T ss_dssp TTCCEEEECTTTTC-----CCS-SCCTTE--------EEE-SSCCHHHHGGGS
T ss_pred CCCEEEEEeCCccc-----ccc-cCCCCE--------EEe-cCCCHHHHHhhC
Confidence 99999999865421 111 256775 555 999999999764
No 14
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.80 E-value=1.4e-18 Score=163.41 Aligned_cols=285 Identities=15% Similarity=0.143 Sum_probs=146.2
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCC-Cc
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGC-EN 84 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 84 (367)
.++||++++.++.||++|+++|+++|++|||+|+++++.... ..+. ..+++++.++......++.... ..
T Consensus 19 ~~mrIl~~~~~~~GHv~p~l~la~~L~~~GheV~~~~~~~~~----~~v~-----~~G~~~~~i~~~~~~~~~~~~~~~~ 89 (441)
T 2yjn_A 19 SHMRVVFSSMASKSHLFGLVPLAWAFRAAGHEVRVVASPALT----EDIT-----AAGLTAVPVGTDVDLVDFMTHAGHD 89 (441)
T ss_dssp CCCEEEEECCSCHHHHTTTHHHHHHHHHTTCEEEEEECGGGH----HHHH-----TTTCCEEECSCCCCHHHHHHHTTHH
T ss_pred CccEEEEEcCCCcchHhHHHHHHHHHHHCCCeEEEEeCchhH----HHHH-----hCCCceeecCCccchHHHhhhhhcc
Confidence 357999999999999999999999999999999999986432 2221 2357787775210000000000 00
Q ss_pred c------ccc----chhhhHHHHHH----HHHHHH-----h-hHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeE
Q 041444 85 L------DAI----TNEVNKELIVK----FLGATT-----K-LQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 144 (367)
Q Consensus 85 ~------~~~----~~~~~~~~~~~----~~~~~~-----~-~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v 144 (367)
. ... .....+..+.. +...+. . ....+.+++++.+||+||+|.++.++..+|+++|||+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~aA~~lgiP~v 169 (441)
T 2yjn_A 90 IIDYVRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKWRPDLVIWEPLTFAAPIAAAVTGTPHA 169 (441)
T ss_dssp HHHHHTTCCCTTCCGGGGSHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHHTCCEE
T ss_pred cccccccccccccCcchhhhhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCEEEecCcchhHHHHHHHcCCCEE
Confidence 0 000 00000011111 111111 1 33445555667899999999987888999999999999
Q ss_pred EEecchhhHHHHHhhhhhhcCCCCCCCCCCceecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHhhhc------
Q 041444 145 VFHGTSFFSLCASNCLRLYEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESESR------ 218 (367)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 218 (367)
.+...+.........+... ....|.. .. . ..+...+....+....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~------------~~---~---~~~~~~l~~~~~~~g~~~~~~~ 220 (441)
T 2yjn_A 170 RLLWGPDITTRARQNFLGL-----------LPDQPEE------------HR---E---DPLAEWLTWTLEKYGGPAFDEE 220 (441)
T ss_dssp EECSSCCHHHHHHHHHHHH-----------GGGSCTT------------TC---C---CHHHHHHHHHHHHTTCCCCCGG
T ss_pred EEecCCCcchhhhhhhhhh-----------ccccccc------------cc---c---chHHHHHHHHHHHcCCCCCCcc
Confidence 9864432211000000000 0000000 00 0 0111222222211110
Q ss_pred ---cceEEecccccccHHHHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCC
Q 041444 219 ---SYGVAVNSFYELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGS 295 (367)
Q Consensus 219 ---~~~~l~nt~~~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS 295 (367)
.+..+..+...++.+ . .. +. ..++..... .+.++.+|++..+++++|||++||
T Consensus 221 ~~~~~~~l~~~~~~~~~~-----~-~~-~~-~~~~~~~~~----------------~~~~~~~~l~~~~~~~~v~v~~Gs 276 (441)
T 2yjn_A 221 VVVGQWTIDPAPAAIRLD-----T-GL-KT-VGMRYVDYN----------------GPSVVPEWLHDEPERRRVCLTLGI 276 (441)
T ss_dssp GTSCSSEEECSCGGGSCC-----C-CC-CE-EECCCCCCC----------------SSCCCCGGGSSCCSSCEEEEEC--
T ss_pred ccCCCeEEEecCccccCC-----C-CC-CC-CceeeeCCC----------------CCcccchHhhcCCCCCEEEEECCC
Confidence 112232222222210 0 00 00 122221000 122356799876677899999999
Q ss_pred CCCC---CHHHHHHHHHHHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCC
Q 041444 296 LANF---TSAQLMEIATGLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHE 366 (367)
Q Consensus 296 ~~~~---~~~~~~~~~~al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hp 366 (367)
+... ..+.+.+++++|.+.+.+|+|+.+.... +.+. .+|+|+ .++ +|+||.++|.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~----~~l~-~~~~~v--------~~~-~~~~~~~ll~~a 336 (441)
T 2yjn_A 277 SSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQL----EGVA-NIPDNV--------RTV-GFVPMHALLPTC 336 (441)
T ss_dssp --------CCSTTTTHHHHHTSSSEEEECCCTTTT----SSCS-SCCSSE--------EEC-CSCCHHHHGGGC
T ss_pred CcccccChHHHHHHHHHHHHcCCCEEEEEECCcch----hhhc-cCCCCE--------EEe-cCCCHHHHHhhC
Confidence 8753 3456778899999999999999874321 1222 256674 444 999999998653
No 15
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.79 E-value=4.2e-19 Score=163.97 Aligned_cols=260 Identities=14% Similarity=0.126 Sum_probs=151.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccC-------CCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEA-------GLPD 80 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 80 (367)
+||++++.++.||++|+++|+++|++|||+|+++++.... ..+. ..+++++.++...... +.+.
T Consensus 1 MrIl~~~~~~~Gh~~p~~~la~~L~~~Gh~V~~~~~~~~~----~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~ 71 (384)
T 2p6p_A 1 MRILFVAAGSPATVFALAPLATAARNAGHQVVMAANQDMG----PVVT-----GVGLPAVATTDLPIRHFITTDREGRPE 71 (384)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECGGGH----HHHH-----HTTCCEEESCSSCHHHHHHBCTTSCBC
T ss_pred CEEEEEeCCccchHhHHHHHHHHHHHCCCEEEEEeCHHHH----HHHH-----hCCCEEEEeCCcchHHHHhhhcccCcc
Confidence 3899999999999999999999999999999999976422 2111 1346676664211000 0010
Q ss_pred CCCcccccchhhhHHHH-HH-HHHHHHhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHh
Q 041444 81 GCENLDAITNEVNKELI-VK-FLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASN 158 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 158 (367)
... .. .... ..+ .. +...+......+.+++++.+||+||+|.+..++..+|+++|+|+|.++..+..
T Consensus 72 ~~~-~~-~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~------ 140 (384)
T 2p6p_A 72 AIP-SD-PVAQ---ARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVD------ 140 (384)
T ss_dssp CCC-CS-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCC------
T ss_pred ccC-cc-hHHH---HHHHHHHHHhhHHHHHHHHHHHHhccCCcEEEECcchhhHHHHHHhcCCCEEEeccCCcc------
Confidence 000 00 0000 111 11 11222233455666677789999999988778889999999999987532110
Q ss_pred hhhhhcCCCCCCCCCCceecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHhh-----hccceEEecccccccHH
Q 041444 159 CLRLYEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESE-----SRSYGVAVNSFYELEPA 233 (367)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~nt~~~le~~ 233 (367)
..++. . .+...+.+..... ..++.+++++...++.+
T Consensus 141 -------------------~~~~~-----------~---------~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 181 (384)
T 2p6p_A 141 -------------------ADGIH-----------P---------GADAELRPELSELGLERLPAPDLFIDICPPSLRPA 181 (384)
T ss_dssp -------------------CTTTH-----------H---------HHHHHTHHHHHHTTCSSCCCCSEEEECSCGGGSCT
T ss_pred -------------------cchhh-----------H---------HHHHHHHHHHHHcCCCCCCCCCeEEEECCHHHCCC
Confidence 00000 0 0011111111111 11456778887776632
Q ss_pred HHHHHHHhcC-CceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCC-----CHHHHHHH
Q 041444 234 YADHYRKALG-RRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANF-----TSAQLMEI 307 (367)
Q Consensus 234 ~~~~~~~~~~-~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~-----~~~~~~~~ 307 (367)
. ..+ .++.+++ . . .+.++.+|++.++++++|||+|||.... +.+.+.++
T Consensus 182 ~------~~~~~~~~~~~-~---~---------------~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~ 236 (384)
T 2p6p_A 182 N------AAPARMMRHVA-T---S---------------RQCPLEPWMYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGL 236 (384)
T ss_dssp T------SCCCEECCCCC-C---C---------------CCCBCCHHHHCCCSSCEEEEECSSSSSCCSSCCCCTTHHHH
T ss_pred C------CCCCCceEecC-C---C---------------CCCCCCchhhcCCCCCEEEEECCCCCccccccccHHHHHHH
Confidence 1 111 1233331 1 0 0123456888755678999999998864 55788999
Q ss_pred HHHHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCC
Q 041444 308 ATGLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHE 366 (367)
Q Consensus 308 ~~al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hp 366 (367)
+++|++++.+|+|+.+.+.. +.+. .+|+| +.+ +|+||.++|++.
T Consensus 237 ~~al~~~~~~~~~~~g~~~~----~~l~-~~~~~---------v~~-~~~~~~~~l~~~ 280 (384)
T 2p6p_A 237 AKDLVRWDVELIVAAPDTVA----EALR-AEVPQ---------ARV-GWTPLDVVAPTC 280 (384)
T ss_dssp HHHHHTTTCEEEEECCHHHH----HHHH-HHCTT---------SEE-ECCCHHHHGGGC
T ss_pred HHHHhcCCcEEEEEeCCCCH----HhhC-CCCCc---------eEE-cCCCHHHHHhhC
Confidence 99999999999999864210 0000 12334 466 999999999764
No 16
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.74 E-value=3.4e-17 Score=151.92 Aligned_cols=264 Identities=16% Similarity=0.158 Sum_probs=149.4
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCC---
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGC--- 82 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 82 (367)
..+||+|++.++.||++|+++|+++|.+|||+|+++++ ...+.+. ..+++++.++... .+....
T Consensus 19 ~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~-~~~~~~~---------~~G~~~~~~~~~~---~~~~~~~~~ 85 (398)
T 3oti_A 19 RHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA-EHADRAA---------AAGLEVVDVAPDY---SAVKVFEQV 85 (398)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES-SCHHHHH---------TTTCEEEESSTTC---CHHHHHHHH
T ss_pred hcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc-chHHHHH---------hCCCeeEecCCcc---CHHHHhhhc
Confidence 35799999999999999999999999999999999998 4432222 2356777664210 000000
Q ss_pred -------------CcccccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecc
Q 041444 83 -------------ENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGT 149 (367)
Q Consensus 83 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~ 149 (367)
....... .....+......+...+.+++++.+||+||+|....++..+|+++|+|+|.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~ 160 (398)
T 3oti_A 86 AKDNPRFAETVATRPAIDLE-----EWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRAGVPAVQRNQS 160 (398)
T ss_dssp HHHCHHHHHTGGGSCCCSGG-----GGHHHHHHHHGGGHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCT
T ss_pred ccCCccccccccCChhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHcCCCEEEEecc
Confidence 0000000 1111222333445667788888889999999988888889999999999976432
Q ss_pred hhhHHHHHhhhhhhcCCCCCCCCCCceecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHhhhccceEEeccccc
Q 041444 150 SFFSLCASNCLRLYEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESESRSYGVAVNSFYE 229 (367)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~ 229 (367)
..... . .. ... .+ .+.....+...........+.....+
T Consensus 161 ~~~~~-------------------------~------~~----~~~---~~---~l~~~~~~~~~~~~~~~~~~~~~~~~ 199 (398)
T 3oti_A 161 AWRTR-------------------------G------MH----RSI---AS---FLTDLMDKHQVSLPEPVATIESFPPS 199 (398)
T ss_dssp TCCCT-------------------------T------HH----HHH---HT---TCHHHHHHTTCCCCCCSEEECSSCGG
T ss_pred CCCcc-------------------------c------hh----hHH---HH---HHHHHHHHcCCCCCCCCeEEEeCCHH
Confidence 11000 0 00 000 00 00011111000001112222222222
Q ss_pred ccHHHHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCC--CHHHHHHH
Q 041444 230 LEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANF--TSAQLMEI 307 (367)
Q Consensus 230 le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~--~~~~~~~~ 307 (367)
+..+ ......++.++ |. . .+..+..|++..+++++|||++||.... ..+.+.++
T Consensus 200 ~~~~-----~~~~~~~~~~~-~~---~---------------~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~ 255 (398)
T 3oti_A 200 LLLE-----AEPEGWFMRWV-PY---G---------------GGAVLGDRLPPVPARPEVAITMGTIELQAFGIGAVEPI 255 (398)
T ss_dssp GGTT-----SCCCSBCCCCC-CC---C---------------CCEECCSSCCCCCSSCEEEECCTTTHHHHHCGGGHHHH
T ss_pred HCCC-----CCCCCCCcccc-CC---C---------------CCcCCchhhhcCCCCCEEEEEcCCCccccCcHHHHHHH
Confidence 2210 00000001000 00 0 1112345776656678999999999643 56778999
Q ss_pred HHHHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCC
Q 041444 308 ATGLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHE 366 (367)
Q Consensus 308 ~~al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hp 366 (367)
+++|++.+.+|+|+.+.... ..+. .+|+|+ .++ +|+||.++|+|.
T Consensus 256 ~~~l~~~~~~~v~~~g~~~~----~~l~-~~~~~v--------~~~-~~~~~~~ll~~a 300 (398)
T 3oti_A 256 IAAAGEVDADFVLALGDLDI----SPLG-TLPRNV--------RAV-GWTPLHTLLRTC 300 (398)
T ss_dssp HHHHHTSSSEEEEECTTSCC----GGGC-SCCTTE--------EEE-SSCCHHHHHTTC
T ss_pred HHHHHcCCCEEEEEECCcCh----hhhc-cCCCcE--------EEE-ccCCHHHHHhhC
Confidence 99999999999999876431 1222 367775 455 999999999984
No 17
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.73 E-value=1.3e-16 Score=147.93 Aligned_cols=270 Identities=14% Similarity=0.126 Sum_probs=139.9
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCC--CCCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLP--DGCE 83 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 83 (367)
.++||+|++.++.||++|+++|+++|.+|||+|+++++....+.+.. .++.+..++.......+. ....
T Consensus 14 ~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~---------~G~~~~~~~~~~~~~~~~~~~~~~ 84 (398)
T 4fzr_A 14 SHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTG---------AGLPFAPTCPSLDMPEVLSWDREG 84 (398)
T ss_dssp -CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHH---------TTCCEEEEESSCCHHHHHSBCTTS
T ss_pred CceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHh---------CCCeeEecCCccchHhhhhhhccC
Confidence 46799999999999999999999999999999999997533222221 346666665210000000 0000
Q ss_pred ccccc--chh-hhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecchhhHHHHHhhh
Q 041444 84 NLDAI--TNE-VNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCL 160 (367)
Q Consensus 84 ~~~~~--~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 160 (367)
..... ... ........+......+...+.+++++.+||+||+|....++..+|+++|+|+|.+............
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~~~~~~~~~~-- 162 (398)
T 4fzr_A 85 NRTTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPELIKS-- 162 (398)
T ss_dssp CBCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCHHHHH--
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECccccHHHHHHHhhCCCEEEeccCCCCchhhhH--
Confidence 00000 000 0001111122222344556777788889999999987778888999999999986543211100000
Q ss_pred hhhcCCCCCCCCCCceecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHhh-----hccceEEecccccccHHHH
Q 041444 161 RLYEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNESE-----SRSYGVAVNSFYELEPAYA 235 (367)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~nt~~~le~~~~ 235 (367)
.....+....... ......+......++..
T Consensus 163 -------------------------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 197 (398)
T 4fzr_A 163 -------------------------------------------AGVGELAPELAELGLTDFPDPLLSIDVCPPSMEAQ-- 197 (398)
T ss_dssp -------------------------------------------HHHHHTHHHHHTTTCSSCCCCSEEEECSCGGGC----
T ss_pred -------------------------------------------HHHHHHHHHHHHcCCCCCCCCCeEEEeCChhhCCC--
Confidence 0000011110000 01122222222222211
Q ss_pred HHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhhhcCCCCCcEEEEecCCCCCC--------CHHHHHHH
Q 041444 236 DHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKWLNSKQPNSVVYICFGSLANF--------TSAQLMEI 307 (367)
Q Consensus 236 ~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~wLd~~~~~~vIyvsfGS~~~~--------~~~~~~~~ 307 (367)
.. .....+.-. .... ...++.+|++..+++++|||++||+... ..+.++++
T Consensus 198 ---~~---~~~~~~~~~-~~~~--------------~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~ 256 (398)
T 4fzr_A 198 ---PK---PGTTKMRYV-PYNG--------------RNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQAL 256 (398)
T ss_dssp --------CCCEECCCC-CCCC--------------SSCCCCHHHHSCCSSCEEECC----------------CCSHHHH
T ss_pred ---CC---CCCCCeeee-CCCC--------------CCCCCchhhhcCCCCCEEEEEccCcccccccccccchHHHHHHH
Confidence 00 111111100 0000 0112345666555678999999998643 34678899
Q ss_pred HHHHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCC
Q 041444 308 ATGLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHE 366 (367)
Q Consensus 308 ~~al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hp 366 (367)
+++|.+.+.+++|+.+.... +.+. .+|+|+ .++ +|+||.++|+|.
T Consensus 257 ~~al~~~~~~~v~~~~~~~~----~~l~-~~~~~v--------~~~-~~~~~~~ll~~a 301 (398)
T 4fzr_A 257 SQELPKLGFEVVVAVSDKLA----QTLQ-PLPEGV--------LAA-GQFPLSAIMPAC 301 (398)
T ss_dssp HHHGGGGTCEEEECCCC-------------CCTTE--------EEE-SCCCHHHHGGGC
T ss_pred HHHHHhCCCEEEEEeCCcch----hhhc-cCCCcE--------EEe-CcCCHHHHHhhC
Confidence 99999999999998865421 1222 367774 555 999999999874
No 18
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.63 E-value=4.6e-15 Score=137.14 Aligned_cols=128 Identities=13% Similarity=0.172 Sum_probs=78.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeee-eCCCcc-----CCCCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTI-KFPSVE-----AGLPDG 81 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~ 81 (367)
+||+|++.++.||+++++.|+++|.+|||+|+++++.... .... ..+++++.+ ...... ...+..
T Consensus 2 MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~----~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~ 72 (391)
T 3tsa_A 2 MRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQ----ATAH-----GAGLTTAGIRGNDRTGDTGGTTQLRFP 72 (391)
T ss_dssp CEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHH----HHHH-----HBTCEEEEC--------------CCSC
T ss_pred cEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhH----HHHH-----hCCCceeeecCCccchhhhhhhccccc
Confidence 5899999999999999999999999999999999975322 2111 134666655 210000 000000
Q ss_pred CCcccccchhhhHHHHHHHHHHHHhh-------HHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEe
Q 041444 82 CENLDAITNEVNKELIVKFLGATTKL-------QEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFH 147 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~ 147 (367)
.......... .....+......+ ...+.+++++.+||+||+|.+..++..+|+++|+|++.+.
T Consensus 73 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PD~Vv~~~~~~~~~~aa~~~giP~v~~~ 142 (391)
T 3tsa_A 73 NPAFGQRDTE---AGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCALIGRVLGGLLDLPVVLHR 142 (391)
T ss_dssp CGGGGCTTSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHTTCCEEEEC
T ss_pred ccccccccch---hHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCEEEeCcchhHHHHHHHHhCCCEEEEe
Confidence 0000000000 1111122212223 5667778888899999999877778889999999998864
No 19
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.63 E-value=3.4e-14 Score=132.16 Aligned_cols=267 Identities=16% Similarity=0.205 Sum_probs=148.2
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCC-----------c
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPS-----------V 74 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 74 (367)
.++||++++.++.||+++++.|+++|.++||+|+++++... ..... ..+++++.++... .
T Consensus 19 ~~MrIl~~~~~~~Gh~~~~~~la~~L~~~GheV~v~~~~~~----~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~ 89 (412)
T 3otg_A 19 RHMRVLFASLGTHGHTYPLLPLATAARAAGHEVTFATGEGF----AGTLR-----KLGFEPVATGMPVFDGFLAALRIRF 89 (412)
T ss_dssp CSCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECGGG----HHHHH-----HTTCEEEECCCCHHHHHHHHHHHHH
T ss_pred ceeEEEEEcCCCcccHHHHHHHHHHHHHCCCEEEEEccHHH----HHHHH-----hcCCceeecCcccccchhhhhhhhh
Confidence 46799999999999999999999999999999999998632 22211 1346666654100 0
Q ss_pred -cCCCCCCCCcccccchhhhHHHHHHHHHH-HHhhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecchhh
Q 041444 75 -EAGLPDGCENLDAITNEVNKELIVKFLGA-TTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFF 152 (367)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 152 (367)
....+. ........ .....+... ...+...+.+++++.+||+||+|....++..+|+++|+|+|........
T Consensus 90 ~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~~~~ 163 (412)
T 3otg_A 90 DTDSPEG-LTPEQLSE-----LPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYGAGLAALKAGIPTICHGVGRDT 163 (412)
T ss_dssp SCSCCTT-CCHHHHTT-----SHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCSCCC
T ss_pred cccCCcc-CChhHhhH-----HHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhHHHHHHHHcCCCEEEecccccC
Confidence 000000 00000000 011111111 1223456677778889999999987777788899999999885433211
Q ss_pred HHHHHhhhhhhcCCCCCCCCCCceecCCCCCcccccccCCCcccccCCCChhHHHHHHHHHHh----------hhccceE
Q 041444 153 SLCASNCLRLYEPHKKVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDLSRLLKATNES----------ESRSYGV 222 (367)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 222 (367)
...... .+...+.+.... ...++.+
T Consensus 164 ~~~~~~---------------------------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~d~~ 198 (412)
T 3otg_A 164 PDDLTR---------------------------------------------SIEEEVRGLAQRLGLDLPPGRIDGFGNPF 198 (412)
T ss_dssp CSHHHH---------------------------------------------HHHHHHHHHHHHTTCCCCSSCCGGGGCCE
T ss_pred chhhhH---------------------------------------------HHHHHHHHHHHHcCCCCCcccccCCCCeE
Confidence 000000 000111111110 1123334
Q ss_pred EecccccccHHHHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHHhhh-hcCCCCCcEEEEecCCCCCCCH
Q 041444 223 AVNSFYELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELECLKW-LNSKQPNSVVYICFGSLANFTS 301 (367)
Q Consensus 223 l~nt~~~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~w-Ld~~~~~~vIyvsfGS~~~~~~ 301 (367)
+..+-.+++.. ..........+-..... ......+| ....+++.+||+++||...-..
T Consensus 199 i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~ 257 (412)
T 3otg_A 199 IDIFPPSLQEP-----EFRARPRRHELRPVPFA----------------EQGDLPAWLSSRDTARPLVYLTLGTSSGGTV 257 (412)
T ss_dssp EECSCGGGSCH-----HHHTCTTEEECCCCCCC----------------CCCCCCGGGGGSCTTSCEEEEECTTTTCSCH
T ss_pred EeeCCHHhcCC-----cccCCCCcceeeccCCC----------------CCCCCCCccccccCCCCEEEEEcCCCCcCcH
Confidence 44333333321 11111222222111100 01112345 2223457799999999975567
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCceEecCcccHHHhhcCC
Q 041444 302 AQLMEIATGLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHE 366 (367)
Q Consensus 302 ~~~~~~~~al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g~vv~~W~PQ~~vL~Hp 366 (367)
+.+.++++++.+.+.+|+|..+..... +.+. .+++|+ .++ +|+|+.++|++.
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~g~~~~~---~~l~-~~~~~v--------~~~-~~~~~~~~l~~a 309 (412)
T 3otg_A 258 EVLRAAIDGLAGLDADVLVASGPSLDV---SGLG-EVPANV--------RLE-SWVPQAALLPHV 309 (412)
T ss_dssp HHHHHHHHHHHTSSSEEEEECCSSCCC---TTCC-CCCTTE--------EEE-SCCCHHHHGGGC
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCCCh---hhhc-cCCCcE--------EEe-CCCCHHHHHhcC
Confidence 888999999999899999998764311 1222 356664 455 999999999874
No 20
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.89 E-value=5.2e-09 Score=84.51 Aligned_cols=78 Identities=27% Similarity=0.371 Sum_probs=63.5
Q ss_pred chHHHhhhhcCCCCCcEEEEecCCCC-CCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhCCCc
Q 041444 272 DELECLKWLNSKQPNSVVYICFGSLA-NFTSAQLMEIATGLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRMEGKG 350 (367)
Q Consensus 272 ~~~~l~~wLd~~~~~~vIyvsfGS~~-~~~~~~~~~~~~al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~~~g 350 (367)
++.++.+|++..+++++|||+|||.. ..+.+.+..++++|++.+.+|+|+.+.... . .+++|+
T Consensus 7 l~~~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~-------~-~~~~~v-------- 70 (170)
T 2o6l_A 7 LPKEMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGNKP-------D-TLGLNT-------- 70 (170)
T ss_dssp CCHHHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSSCC-------T-TCCTTE--------
T ss_pred CCHHHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCcCc-------c-cCCCcE--------
Confidence 78899999998767789999999986 567788899999999999999999865421 1 366774
Q ss_pred eEecCcccHHHhhcCC
Q 041444 351 LIIRGWAPQVLILDHE 366 (367)
Q Consensus 351 ~vv~~W~PQ~~vL~Hp 366 (367)
.++ +|+||.++|.|+
T Consensus 71 ~~~-~~~~~~~~l~~~ 85 (170)
T 2o6l_A 71 RLY-KWIPQNDLLGHP 85 (170)
T ss_dssp EEE-SSCCHHHHHTST
T ss_pred EEe-cCCCHHHHhcCC
Confidence 455 999999999774
No 21
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=98.77 E-value=3.2e-08 Score=90.25 Aligned_cols=118 Identities=21% Similarity=0.262 Sum_probs=70.5
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCccc
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLD 86 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (367)
+.||++...+.-||++|.++||++|.+|||+|+|+++....+. ..+. ..+++++.++. .+++... ..
T Consensus 2 ~~~i~i~~GGTgGHi~palala~~L~~~g~~V~~vg~~~g~e~--~~v~-----~~g~~~~~i~~----~~~~~~~--~~ 68 (365)
T 3s2u_A 2 KGNVLIMAGGTGGHVFPALACAREFQARGYAVHWLGTPRGIEN--DLVP-----KAGLPLHLIQV----SGLRGKG--LK 68 (365)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTHH--HHTG-----GGTCCEEECC----------------
T ss_pred CCcEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEECCchHhh--chhh-----hcCCcEEEEEC----CCcCCCC--HH
Confidence 4588888877779999999999999999999999987653321 1111 12466766652 1221100 00
Q ss_pred ccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCcc--HHHHHHHhCCCeEEE
Q 041444 87 AITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFPW--ATDAAAKFGIPRLVF 146 (367)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~~--~~~~A~~lgiP~v~~ 146 (367)
..+......... ......++++.+||+||.+....+ +..+|+.+|+|+++.
T Consensus 69 --------~~~~~~~~~~~~-~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP~vih 121 (365)
T 3s2u_A 69 --------SLVKAPLELLKS-LFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIH 121 (365)
T ss_dssp ------------CHHHHHHH-HHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCCEEEE
T ss_pred --------HHHHHHHHHHHH-HHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCCEEEE
Confidence 111111111111 122345677889999999965543 456788899999875
No 22
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=98.17 E-value=1.6e-05 Score=71.97 Aligned_cols=118 Identities=18% Similarity=0.226 Sum_probs=71.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccc
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDA 87 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (367)
.||+++..+..||..++..|+++|+++||+|++++...... ..... ..+++++.++.. .+... ..
T Consensus 7 mkIl~~~~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~--~~~~~-----~~g~~~~~~~~~----~~~~~--~~-- 71 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRME--ADLVP-----KHGIEIDFIRIS----GLRGK--GI-- 71 (364)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTH--HHHGG-----GGTCEEEECCCC----CCTTC--CH--
T ss_pred cEEEEEeCCCccchhHHHHHHHHHHHcCCEEEEEecCCcch--hhhcc-----ccCCceEEecCC----ccCcC--cc--
Confidence 68999987777999999999999999999999999764321 11111 124666655421 11110 00
Q ss_pred cchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCc--cHHHHHHHhCCCeEEEe
Q 041444 88 ITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFP--WATDAAAKFGIPRLVFH 147 (367)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~--~~~~~A~~lgiP~v~~~ 147 (367)
. ..+....... .....+.+++++.+||+|+++.... .+..++..+|+|+|...
T Consensus 72 ~------~~~~~~~~~~-~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 126 (364)
T 1f0k_A 72 K------ALIAAPLRIF-NAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHE 126 (364)
T ss_dssp H------HHHTCHHHHH-HHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEE
T ss_pred H------HHHHHHHHHH-HHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEe
Confidence 0 1111111111 1123455666777999999986432 34567788899998653
No 23
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=96.78 E-value=0.016 Score=53.17 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=31.7
Q ss_pred CccEEEEEcCC-----CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 6 PQLHVFFFPFM-----AHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 6 ~~~~vl~~p~p-----~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+++||+++... .-|--.-+..|+++|+++||+|+++++..
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~ 45 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSH 45 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECT
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35789988732 34666779999999999999999999653
No 24
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=96.43 E-value=0.026 Score=53.08 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=32.5
Q ss_pred CCCCCCccEEEEEcCC---------------CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 1 MGSKIPQLHVFFFPFM---------------AHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p---------------~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
|...++++||+++... .-|.-..+..|+++|+++||+|++++...
T Consensus 1 m~~m~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~ 60 (499)
T 2r60_A 1 MVEMTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRI 60 (499)
T ss_dssp ------CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred CccccccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCC
Confidence 4343446799988742 24777889999999999999999998753
No 25
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=96.12 E-value=0.015 Score=52.78 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=31.9
Q ss_pred CccEEEEEcCC---C-cccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 6 PQLHVFFFPFM---A-HGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 6 ~~~~vl~~p~p---~-~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
+++||+++..- . .|+-.-+..++++|+++||+|++++....
T Consensus 19 ~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 63 (406)
T 2gek_A 19 SHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASP 63 (406)
T ss_dssp --CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCT
T ss_pred CcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCc
Confidence 46789988732 2 46778899999999999999999997643
No 26
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=96.02 E-value=0.042 Score=50.50 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=32.9
Q ss_pred CccEEEEEcC---C--------CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 6 PQLHVFFFPF---M--------AHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 6 ~~~~vl~~p~---p--------~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.++||+++.. | .-|+-..+..|+++|+++||+|++++...
T Consensus 19 ~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~ 69 (438)
T 3c48_A 19 SHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRAT 69 (438)
T ss_dssp CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred chheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 4679999984 2 25888999999999999999999998764
No 27
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=95.32 E-value=0.066 Score=48.11 Aligned_cols=111 Identities=14% Similarity=0.081 Sum_probs=58.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCCCcchhhhhHhhhhhcCCCcce-eeeeCCCccCCCCCCCCcc
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTPANAPYVSKSVERANELGIELDV-KTIKFPSVEAGLPDGCENL 85 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~r-Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 85 (367)
.||+++... .+.......|+++|.++ ||+|.++++............ ..++.+ ..++. .. ..
T Consensus 6 mkIl~v~~~-~~~~~~~~~l~~~L~~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-------~~--~~- 69 (376)
T 1v4v_A 6 KRVVLAFGT-RPEATKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALS-----LFGIQEDRNLDV-------MQ--ER- 69 (376)
T ss_dssp EEEEEEECS-HHHHHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHH-----TTTCCCSEECCC-------CS--SC-
T ss_pred eEEEEEEec-cHHHHHHHHHHHHHHhCCCCceEEEEcCCcHHHHHHHHH-----HcCCCccccccc-------CC--CC-
Confidence 688888743 33445567889999998 899887765432211111111 112222 12211 10 00
Q ss_pred cccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEe--cCCCcc-HHHHHHHhCCCeEEE
Q 041444 86 DAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVA--DIFFPW-ATDAAAKFGIPRLVF 146 (367)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~--D~~~~~-~~~~A~~lgiP~v~~ 146 (367)
. .....+.. ....+.+++++.+||+|++ +....+ +..+|+.+|+|++.+
T Consensus 70 --~------~~~~~~~~----~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~ 121 (376)
T 1v4v_A 70 --Q------ALPDLAAR----ILPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHV 121 (376)
T ss_dssp --C------CHHHHHHH----HHHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEE
T ss_pred --c------cHHHHHHH----HHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHhCCCEEEE
Confidence 0 00111111 1234556777789999997 322333 456788889998754
No 28
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=95.14 E-value=0.099 Score=47.05 Aligned_cols=108 Identities=10% Similarity=0.078 Sum_probs=64.5
Q ss_pred CCccEEEEEcC--C--CcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCC
Q 041444 5 IPQLHVFFFPF--M--AHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPD 80 (367)
Q Consensus 5 ~~~~~vl~~p~--p--~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
++++||+++.. + ..|.-..+..|+++| +||+|++++........... . ...++.+..++.. .
T Consensus 2 ~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~-~----~~~~~~~~~~~~~-------~ 67 (394)
T 3okp_A 2 SASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAY-D----KTLDYEVIRWPRS-------V 67 (394)
T ss_dssp --CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHH-H----TTCSSEEEEESSS-------S
T ss_pred CCCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhh-c----cccceEEEEcccc-------c
Confidence 34668888764 3 358888999999999 79999999987543211111 0 1234566555420 0
Q ss_pred CCCcccccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCCCc--cHHHHHHHhCCCeEEE
Q 041444 81 GCENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIFFP--WATDAAAKFGIPRLVF 146 (367)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~~--~~~~~A~~lgiP~v~~ 146 (367)
. ... . .....+.+++++.++|+|++..... ....++.++|+|.+++
T Consensus 68 ~------~~~----~----------~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~ 115 (394)
T 3okp_A 68 M------LPT----P----------TTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIA 115 (394)
T ss_dssp C------CSC----H----------HHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEEE
T ss_pred c------ccc----h----------hhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEEE
Confidence 0 000 0 1122455666778999999765433 3456788899985554
No 29
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=94.63 E-value=0.21 Score=45.08 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=31.0
Q ss_pred ccEEEEEcCCCc-ccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 7 QLHVFFFPFMAH-GHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 7 ~~~vl~~p~p~~-gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
++++....+|.. |.-.-+..|+++|+++||+|++++...
T Consensus 15 ~~~~~~~~~p~~GG~~~~~~~la~~L~~~G~~V~v~~~~~ 54 (394)
T 2jjm_A 15 KLKIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITSGL 54 (394)
T ss_dssp CCEEEEECCC--CHHHHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred eeeeehhcCCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 567777766654 677889999999999999999999753
No 30
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=94.20 E-value=0.12 Score=46.55 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=27.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCC-eEEEEeCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGV-KASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh-~Vt~~t~~ 44 (367)
+||+++... .++...+..|+++|.++|+ ++.++.+.
T Consensus 1 mkIl~v~~~-~~~~~~~~~l~~~L~~~g~~~~~v~~~~ 37 (384)
T 1vgv_A 1 MKVLTVFGT-RPEAIKMAPLVHALAKDPFFEAKVCVTA 37 (384)
T ss_dssp CEEEEEECS-HHHHHHHHHHHHHHHHSTTCEEEEEECC
T ss_pred CeEEEEecc-cHHHHHHHHHHHHHHhCCCCceEEEEcC
Confidence 367776543 5778888999999999995 88765543
No 31
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=92.77 E-value=1 Score=40.00 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=30.0
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhC-C-CeEEEEeCCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATR-G-VKASVITTPA 45 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~r-G-h~Vt~~t~~~ 45 (367)
+++||+++.. ..++......++++|+++ | |+|+++++..
T Consensus 7 ~~mkIl~v~~-~~~~~~~~~~l~~~L~~~~~~~~v~~~~~~~ 47 (375)
T 3beo_A 7 ERLKVMTIFG-TRPEAIKMAPLVLELQKHPEKIESIVTVTAQ 47 (375)
T ss_dssp SCEEEEEEEC-SHHHHHHHHHHHHHHTTCTTTEEEEEEECCS
T ss_pred cCceEEEEec-CcHHHHHHHHHHHHHHhCCCCCCeEEEEcCC
Confidence 4578998873 367888889999999987 5 8887776654
No 32
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=92.09 E-value=0.81 Score=38.56 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=61.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccc
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDA 87 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (367)
+|||+.--=|. +--=+..|+++|.+.| +|+++.+..........+ +....+++..... ...-..++
T Consensus 2 p~ILlTNDDGi-~apGi~~L~~~l~~~g-~V~VvAP~~~~Sg~g~si----T~~~pl~~~~~~~--------~~~~~v~G 67 (251)
T 2wqk_A 2 PTFLLVNDDGY-FSPGINALREALKSLG-RVVVVAPDRNLSGVGHSL----TFTEPLKMRKIDT--------DFYTVIDG 67 (251)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSC----CCSSCEEEEEEET--------TEEEETTC
T ss_pred CEEEEEcCCCC-CcHHHHHHHHHHHhCC-CEEEEeeCCCCcccccCc----CCCCCceeEEeec--------cceeecCC
Confidence 46666654443 2234788999999999 599998876542221110 0011233333220 00000011
Q ss_pred cchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEe----------cCCCcc---HHHHHHHhCCCeEEEecc
Q 041444 88 ITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVA----------DIFFPW---ATDAAAKFGIPRLVFHGT 149 (367)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~----------D~~~~~---~~~~A~~lgiP~v~~~~~ 149 (367)
.+. +...-.+..++.+.+||+||+ |.+.+. ++.-|..+|+|.|.+|-.
T Consensus 68 TPa--------------DCV~lal~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~~ 128 (251)
T 2wqk_A 68 TPA--------------DCVHLGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAF 128 (251)
T ss_dssp CHH--------------HHHHHHHHTTTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ChH--------------HHHhhhhhhhcCCCCCCEEEeCccCCCccccceecchHHHHHHHHHhcCCCeEEEEcc
Confidence 111 111224555666778999998 445554 334567789999999854
No 33
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=91.73 E-value=0.79 Score=41.68 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=59.2
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCcchhhhhHhhhhhcCCCcce-eeeeCCCccCCCCCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANAPYVSKSVERANELGIELDV-KTIKFPSVEAGLPDG 81 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~r--Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (367)
|++.||+++. ...+.+.=+..|.++|.++ |+++.++.+....+....... ..+++. +.+. +...
T Consensus 25 m~~~kI~~v~-Gtr~~~~~~a~li~~l~~~~~~~~~~~~~tG~h~~m~~~~~~-----~~~i~~~~~l~-------v~~~ 91 (403)
T 3ot5_A 25 MAKIKVMSIF-GTRPEAIKMAPLVLALEKEPETFESTVVITAQHREMLDQVLE-----IFDIKPDIDLD-------IMKK 91 (403)
T ss_dssp -CCEEEEEEE-CSHHHHHHHHHHHHHHHTCTTTEEEEEEECC-----CHHHHH-----HTTCCCSEECC-------CCC-
T ss_pred cccceEEEEE-ecChhHHHHHHHHHHHHhCCCCCcEEEEEecCcHHHHHHHHH-----hcCCCCCcccc-------cCCC
Confidence 4456887766 4456677779999999988 688776655433111111110 011110 1111 1000
Q ss_pred CCcccccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEe-cC-CCcc-HHHHHHHhCCCeEEE
Q 041444 82 CENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVA-DI-FFPW-ATDAAAKFGIPRLVF 146 (367)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~-D~-~~~~-~~~~A~~lgiP~v~~ 146 (367)
.. . .. .........+.+++++.+||+|++ +. ...+ +..+|.++|||++.+
T Consensus 92 ~~-----~------~~----~~~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~ 144 (403)
T 3ot5_A 92 GQ-----T------LA----EITSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKMLGHV 144 (403)
T ss_dssp CC-----C------HH----HHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEEEE
T ss_pred CC-----C------HH----HHHHHHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHHhCCCEEEE
Confidence 00 0 01 111223445667777889999985 32 2333 456888999998764
No 34
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=91.49 E-value=0.9 Score=41.19 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=61.3
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCCCcchhhhhHhhhhhcCCCcce-eeeeCCCccCCCCCCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTPANAPYVSKSVERANELGIELDV-KTIKFPSVEAGLPDGC 82 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~r-Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 82 (367)
+++.||+++. +..+...=+.+|.++|.++ |+++.++.+....+....... ..+++. ..+. +...
T Consensus 23 ~~m~ki~~v~-Gtr~~~~~~a~li~~l~~~~~~~~~~~~tG~h~~~~~~~~~-----~~~i~~~~~l~-------~~~~- 88 (396)
T 3dzc_A 23 NAMKKVLIVF-GTRPEAIKMAPLVQQLCQDNRFVAKVCVTGQHREMLDQVLE-----LFSITPDFDLN-------IMEP- 88 (396)
T ss_dssp -CCEEEEEEE-CSHHHHHHHHHHHHHHHHCTTEEEEEEECCSSSHHHHHHHH-----HTTCCCSEECC-------CCCT-
T ss_pred CCCCeEEEEE-eccHhHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHH-----hcCCCCceeee-------cCCC-
Confidence 4456777665 5556788889999999987 788876665443211111110 011110 1111 0000
Q ss_pred CcccccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEe-c-CCCcc-HHHHHHHhCCCeEEE
Q 041444 83 ENLDAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVA-D-IFFPW-ATDAAAKFGIPRLVF 146 (367)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~-D-~~~~~-~~~~A~~lgiP~v~~ 146 (367)
... ... .+......+.+++++.+||+|+. + ....+ +..+|.++|||++.+
T Consensus 89 ----~~~------~~~----~~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~ 141 (396)
T 3dzc_A 89 ----GQT------LNG----VTSKILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGHV 141 (396)
T ss_dssp ----TCC------HHH----HHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEEE
T ss_pred ----CCC------HHH----HHHHHHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHHhCCCEEEE
Confidence 000 011 11223445667777889999885 3 33323 356788899998764
No 35
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=90.78 E-value=0.29 Score=43.15 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=32.2
Q ss_pred CccEEEEEcCC----------------CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 6 PQLHVFFFPFM----------------AHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 6 ~~~~vl~~p~p----------------~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+++||+++... ..|.-.-+..++++|.++||+|++++...
T Consensus 2 ~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~ 57 (342)
T 2iuy_A 2 RPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPG 57 (342)
T ss_dssp -CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTT
T ss_pred CccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 35688887754 25777889999999999999999998763
No 36
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=90.62 E-value=0.94 Score=40.92 Aligned_cols=112 Identities=16% Similarity=0.162 Sum_probs=60.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccc
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDA 87 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (367)
.+|++ .++++--+.=+.+|.++|.++ ++..++.+....+ .... .+.|..+..+..+..+..+.. .
T Consensus 10 ~~~~~-v~GtRpe~~k~~p~~~~l~~~-~~~~~~~tgqh~~---~~~~-------~~~~~~~~i~~~~~~l~~~~~---~ 74 (385)
T 4hwg_A 10 LKVMT-IVGTRPELIKLCCVISEFDKH-TKHILVHTGQNYA---YELN-------QVFFDDMGIRKPDYFLEVAAD---N 74 (385)
T ss_dssp CEEEE-EECSHHHHHHHHHHHHHHHHH-SEEEEEECSCHHH---HHHT-------HHHHC-CCCCCCSEECCCCCC---C
T ss_pred hheeE-EEEcCHhHHHHHHHHHHHHhc-CCEEEEEeCCCCC---hhHH-------HHHHhhCCCCCCceecCCCCC---C
Confidence 44444 456778888899999999887 8887777664321 1111 111111111000001111100 0
Q ss_pred cchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEe--cCCCccHHHHHHHhCCCeEEE
Q 041444 88 ITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVA--DIFFPWATDAAAKFGIPRLVF 146 (367)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~--D~~~~~~~~~A~~lgiP~v~~ 146 (367)
. .+.+..+...+.+++++.+||+|+. |....++...|.++|||++.+
T Consensus 75 ~------------~~~~~~~~~~l~~~l~~~kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~ 123 (385)
T 4hwg_A 75 T------------AKSIGLVIEKVDEVLEKEKPDAVLFYGDTNSCLSAIAAKRRKIPIFHM 123 (385)
T ss_dssp S------------HHHHHHHHHHHHHHHHHHCCSEEEEESCSGGGGGHHHHHHTTCCEEEE
T ss_pred H------------HHHHHHHHHHHHHHHHhcCCcEEEEECCchHHHHHHHHHHhCCCEEEE
Confidence 0 1112233455677778889999885 344445567888999997764
No 37
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=89.94 E-value=0.56 Score=46.79 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=20.9
Q ss_pred CCCCEEEecCCCc--cHHHHHHHhCCCeEEE
Q 041444 118 HKPDCLVADIFFP--WATDAAAKFGIPRLVF 146 (367)
Q Consensus 118 ~~~D~vi~D~~~~--~~~~~A~~lgiP~v~~ 146 (367)
.+||+|.+-.... .+..+|+.+|+|+|..
T Consensus 406 ~~PDVIHsH~~~sglva~llar~~gvP~V~T 436 (816)
T 3s28_A 406 GKPDLIIGNYSDGNLVASLLAHKLGVTQCTI 436 (816)
T ss_dssp SCCSEEEEEHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCeEEEeCCchHHHHHHHHHHHcCCCEEEE
Confidence 4799998754322 2457888999998763
No 38
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=89.17 E-value=0.3 Score=44.67 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=31.0
Q ss_pred CCccEEEEEcCCCc-----ccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 5 IPQLHVFFFPFMAH-----GHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 5 ~~~~~vl~~p~p~~-----gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
..++||+++..... |=...+..|+++|+++||+|++++...
T Consensus 44 ~~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~GheV~Vvt~~~ 89 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDA 89 (413)
T ss_dssp CCSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESSC
T ss_pred CCCceEEEEeCCCCccccccHHHHHHHHHHHHHHcCCceEEEEecC
Confidence 45678887764322 323568899999999999999999864
No 39
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=88.17 E-value=0.45 Score=45.17 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=30.1
Q ss_pred CccEEEEEcCCC------cccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMA------HGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~------~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.++||+++++-. -|=-..+-.|.++|+++||+|+++++.
T Consensus 8 ~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~ 52 (536)
T 3vue_A 8 HHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPR 52 (536)
T ss_dssp CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred CCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 368999997432 233356789999999999999999964
No 40
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=86.62 E-value=1 Score=40.75 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=33.5
Q ss_pred CCccEEEEEcCCC--cccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 5 IPQLHVFFFPFMA--HGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 5 ~~~~~vl~~p~p~--~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
++++||+++.... -|+-..+..|+++|+++||+|++++....
T Consensus 38 ~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~ 81 (416)
T 2x6q_A 38 LKGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGP 81 (416)
T ss_dssp TTTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred hhccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 4567888765432 48889999999999999999999887643
No 41
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=85.66 E-value=10 Score=30.40 Aligned_cols=40 Identities=13% Similarity=0.078 Sum_probs=36.0
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
++..|.+++.+|.|=....+.+|.+.+.+|++|-++....
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 4568999999999999999999999999999999997553
No 42
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=85.16 E-value=6 Score=33.09 Aligned_cols=114 Identities=16% Similarity=0.223 Sum_probs=61.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcccc
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENLDA 87 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (367)
+||++.--=|. |---+..|+++|.+.| +|+++.+..........+ +....+++..+.. +.. . ..++
T Consensus 2 M~ILlTNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~si----t~~~pl~~~~~~~-----~~~--~-~v~G 67 (251)
T 2phj_A 2 PTFLLVNDDGY-FSPGINALREALKSLG-RVVVVAPDRNLSGVGHSL----TFTEPLKMRKIDT-----DFY--T-VIDG 67 (251)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSC----CCSSCEEEEEEET-----TEE--E-ETTC
T ss_pred CEEEEECCCCC-CCHHHHHHHHHHHhcC-CEEEEecCCCccCCccce----ecCCCeEEEEecC-----CCe--E-EECC
Confidence 35666654443 3445889999999998 999999886543222111 0112233333320 100 0 0011
Q ss_pred cchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEec----------CCCccH---HHHHHHhCCCeEEEecc
Q 041444 88 ITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVAD----------IFFPWA---TDAAAKFGIPRLVFHGT 149 (367)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D----------~~~~~~---~~~A~~lgiP~v~~~~~ 149 (367)
.+. +...-.+..++...+||+||+- .+.+.. ..-|..+|+|.|.||-.
T Consensus 68 TPa--------------DCV~lal~~l~~~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~ 128 (251)
T 2phj_A 68 TPA--------------DCVHLGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAF 128 (251)
T ss_dssp CHH--------------HHHHHHHHTTTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CHH--------------HHHHHHHHHhcCCCCCCEEEECCcCCCcCCCCCccchHHHHHHHHHHcCCCeEEEEcC
Confidence 111 1112234455544689999984 344432 34466789999999764
No 43
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=84.62 E-value=0.85 Score=40.43 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=29.4
Q ss_pred EEEEEcC---CCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 9 HVFFFPF---MAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 9 ~vl~~p~---p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
||+++.. +.-|.-.-+..|+++|+++||+|++++..
T Consensus 2 kIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 40 (374)
T 2iw1_A 2 IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQS 40 (374)
T ss_dssp CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESE
T ss_pred eEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEEEEecC
Confidence 5666643 34578888999999999999999999975
No 44
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=82.91 E-value=5.6 Score=34.86 Aligned_cols=38 Identities=11% Similarity=0.133 Sum_probs=34.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPA 45 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~r--Gh~Vt~~t~~~ 45 (367)
+||+++...+.|.+.-..++.++|.++ +.+|++++...
T Consensus 1 mkILii~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~~ 40 (348)
T 1psw_A 1 MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAW 40 (348)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGG
T ss_pred CeEEEEeccccCHHHHHHHHHHHHHHHCCCCEEEEEECcc
Confidence 379999988889999999999999987 99999999863
No 45
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=81.30 E-value=6.9 Score=34.57 Aligned_cols=43 Identities=7% Similarity=0.074 Sum_probs=38.0
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCc
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPANA 47 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~r--Gh~Vt~~t~~~~~ 47 (367)
.+..+|+++-..+.|.+.-..++.+.|.++ +.+|++++.....
T Consensus 6 l~~~~iLvi~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~ 50 (349)
T 3tov_A 6 LDYKRIVVTFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQ 50 (349)
T ss_dssp CTTCEEEEECCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGG
T ss_pred CCCCEEEEEecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcchh
Confidence 356799999999999999999999999987 9999999987443
No 46
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=80.89 E-value=1.5 Score=40.57 Aligned_cols=37 Identities=11% Similarity=0.148 Sum_probs=28.8
Q ss_pred cEEEEEcCC------CcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFM------AHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p------~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+||+++... .-|=-.-+..|+++|+++||+|+++++.
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~ 43 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPG 43 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 367777642 2355677889999999999999999975
No 47
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=80.20 E-value=1.7 Score=40.25 Aligned_cols=37 Identities=19% Similarity=0.142 Sum_probs=28.5
Q ss_pred cEEEEEcC---C---CcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPF---M---AHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~---p---~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+||+++.. | .-|=-.-+..|+++|+++||+|+++++.
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~ 43 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPA 43 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 36777764 2 2344567889999999999999999975
No 48
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=78.06 E-value=3.5 Score=30.99 Aligned_cols=41 Identities=10% Similarity=0.058 Sum_probs=35.9
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
++.+|++.+.++-.|-.-..-++..|..+|++|.++.....
T Consensus 2 ~~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p 42 (137)
T 1ccw_A 2 EKKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSP 42 (137)
T ss_dssp CCCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEEC
T ss_pred CCCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 46789999999999999999999999999999998765433
No 49
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=75.26 E-value=4.7 Score=30.12 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=28.4
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecchh
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGTSF 151 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~~~ 151 (367)
+++++.+||+||.|..++ .|..+++++ ++|+|.++...-
T Consensus 51 ~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~ 98 (134)
T 3to5_A 51 PMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAK 98 (134)
T ss_dssp HHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCC
T ss_pred HHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCC
Confidence 344557899999999887 377777654 478888766543
No 50
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=74.54 E-value=2.8 Score=30.87 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=25.5
Q ss_pred HHhhhCCCCEEEecCCCcc--HHHHHHHh---CCCeEEEe
Q 041444 113 QLLRDHKPDCLVADIFFPW--ATDAAAKF---GIPRLVFH 147 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~~--~~~~A~~l---giP~v~~~ 147 (367)
+++++.+||+||.|..++. |..+++++ ++|+|.++
T Consensus 47 ~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lT 86 (123)
T 2lpm_A 47 DIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFAT 86 (123)
T ss_dssp HHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBC
T ss_pred HHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEe
Confidence 4556789999999998863 56666654 78877654
No 51
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=73.79 E-value=16 Score=31.05 Aligned_cols=37 Identities=8% Similarity=0.047 Sum_probs=25.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
|||+.--=|. |---+..|++.|.+.| +|+++.+....
T Consensus 2 ~ILlTNDDGi-~ApGi~aL~~aL~~~g-~V~VVAP~~~q 38 (280)
T 1l5x_A 2 KILVTNDDGV-HSPGLRLLYQFALSLG-DVDVVAPESPK 38 (280)
T ss_dssp EEEEECSSCT-TCHHHHHHHHHHGGGS-EEEEEEESSCT
T ss_pred eEEEEcCCCC-CcHhHHHHHHHHHhCC-CEEEEecCCCC
Confidence 3444443332 2233788999999988 99999988654
No 52
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=73.63 E-value=5.6 Score=30.80 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=36.6
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
.+.+|++.+.++-.|-.-..-++..|..+|++|.++-.....
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~ 58 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTP 58 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 468999999999999999999999999999999987654333
No 53
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=73.52 E-value=5.4 Score=34.13 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=25.5
Q ss_pred EEEEEcCC----CcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 9 HVFFFPFM----AHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 9 ~vl~~p~p----~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+|+|..-. |.||+.=.+.||++|. +|+|++..
T Consensus 2 ki~ir~Da~~~IG~GHvmRcl~LA~~l~----~v~F~~~~ 37 (282)
T 3hbm_A 2 KVLFRSDSSSQIGFGHIKRDLVLAKQYS----DVSFACLP 37 (282)
T ss_dssp CEEEEECCBTTTBSHHHHHHHHHHTTCS----SEEEEECC
T ss_pred EEEEEEecCCCccccHHHHHHHHHHHHH----hCEEEEec
Confidence 45555544 5799999999999999 89999854
No 54
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=72.53 E-value=4.8 Score=32.72 Aligned_cols=39 Identities=8% Similarity=0.093 Sum_probs=31.9
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.++.||++...++.+-+. ...|+++|.++| +|.++.+..
T Consensus 17 l~~k~IllgvTGsiaa~k-~~~ll~~L~~~g-~V~vv~T~~ 55 (209)
T 1mvl_A 17 PRKPRVLLAASGSVAAIK-FGNLCHCFTEWA-EVRAVVTKS 55 (209)
T ss_dssp --CCEEEEEECSSGGGGG-HHHHHHHHHTTS-EEEEEECTG
T ss_pred cCCCEEEEEEeCcHHHHH-HHHHHHHHhcCC-CEEEEEcch
Confidence 346789988888877766 899999999999 999998874
No 55
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=71.20 E-value=4.1 Score=32.68 Aligned_cols=40 Identities=10% Similarity=-0.022 Sum_probs=32.1
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.++.||++...++.+=+. ...|.++|.++|++|.++.+..
T Consensus 6 l~~k~IllgvTGs~aa~k-~~~l~~~L~~~g~~V~vv~T~~ 45 (194)
T 1p3y_1 6 LKDKKLLIGICGSISSVG-ISSYLLYFKSFFKEIRVVMTKT 45 (194)
T ss_dssp GGGCEEEEEECSCGGGGG-THHHHHHHTTTSSEEEEEECHH
T ss_pred cCCCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEEchh
Confidence 456788888777765554 7899999999999999998863
No 56
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=70.34 E-value=6.7 Score=31.78 Aligned_cols=45 Identities=9% Similarity=-0.027 Sum_probs=37.9
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchh
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 50 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~ 50 (367)
.+.+|++.+.++..|-....-++..|..+|++|.++...-..+.+
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l 131 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKF 131 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHH
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 356899999999999999999999999999999988765333333
No 57
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=69.79 E-value=8.3 Score=31.28 Aligned_cols=39 Identities=8% Similarity=-0.008 Sum_probs=32.6
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
++.||++--.++.|-+. ...|+++|.++|++|.++.+..
T Consensus 3 ~~k~IllgvTGaiaa~k-~~~ll~~L~~~g~eV~vv~T~~ 41 (209)
T 3zqu_A 3 GPERITLAMTGASGAQY-GLRLLDCLVQEEREVHFLISKA 41 (209)
T ss_dssp SCSEEEEEECSSSCHHH-HHHHHHHHHHTTCEEEEEECHH
T ss_pred CCCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECcc
Confidence 45688888888877666 8899999999999999998863
No 58
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=68.64 E-value=43 Score=30.55 Aligned_cols=43 Identities=9% Similarity=-0.050 Sum_probs=36.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchh
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 50 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~ 50 (367)
--+++..-|+.|=..-.+.+|...+.+|..|.+++.+...+.+
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql 240 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKEN 240 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHH
Confidence 3477888999999999999999999999999999988654433
No 59
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=67.32 E-value=12 Score=26.66 Aligned_cols=39 Identities=26% Similarity=0.397 Sum_probs=27.0
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecchh
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGTSF 151 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~~~ 151 (367)
+.+++.+||+||.|...+ .+..+.+++ ++|++.++....
T Consensus 40 ~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~ 87 (122)
T 3gl9_A 40 EKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGG 87 (122)
T ss_dssp HHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCS
T ss_pred HHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCc
Confidence 345567899999998775 366666654 478888766543
No 60
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=66.99 E-value=4.8 Score=30.57 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=26.5
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+.||+++-. |++- ..+++.|.++||+|+++...
T Consensus 2 ~~~~vlI~G~---G~vG--~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 2 RKDHFIVCGH---SILA--INTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CCSCEEEECC---SHHH--HHHHHHHHHTTCCEEEEECC
T ss_pred CCCcEEEECC---CHHH--HHHHHHHHHCCCCEEEEECC
Confidence 4567888843 5544 78999999999999999864
No 61
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=66.56 E-value=8.8 Score=32.28 Aligned_cols=45 Identities=16% Similarity=0.014 Sum_probs=37.9
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchh
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 50 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~ 50 (367)
.+.+|++.+.++..|-....-++..|..+|++|.++...-..+.+
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l 166 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEV 166 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 467999999999999999999999999999999987754333333
No 62
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=65.34 E-value=11 Score=30.69 Aligned_cols=46 Identities=11% Similarity=-0.034 Sum_probs=38.1
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchh
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 50 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~ 50 (367)
.++.+|++.+.++-.|-....-++..|..+|++|+++-..-..+.+
T Consensus 90 ~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~i 135 (215)
T 3ezx_A 90 EEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENV 135 (215)
T ss_dssp --CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHH
T ss_pred CCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHH
Confidence 3468999999999999999999999999999999988765444343
No 63
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=64.41 E-value=43 Score=30.52 Aligned_cols=40 Identities=18% Similarity=0.082 Sum_probs=33.7
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCCCcc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFAT-RGVKASVITTPANAP 48 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~-rGh~Vt~~t~~~~~~ 48 (367)
-+++..-|+.|=..-.+.+|...+. .|..|.+++.+...+
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~ 242 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAA 242 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHH
Confidence 4678889999999999999999987 489999999875543
No 64
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=64.15 E-value=9.7 Score=29.93 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=31.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
.||++.-.++.+=+ =...+.++|.++|++|+++.++...
T Consensus 6 k~IllgvTGs~aa~-k~~~ll~~L~~~g~~V~vv~T~~A~ 44 (175)
T 3qjg_A 6 ENVLICLCGSVNSI-NISHYIIELKSKFDEVNVIASTNGR 44 (175)
T ss_dssp CEEEEEECSSGGGG-GHHHHHHHHTTTCSEEEEEECTGGG
T ss_pred CEEEEEEeCHHHHH-HHHHHHHHHHHCCCEEEEEECcCHH
Confidence 57877777775554 4889999999999999999887443
No 65
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=63.43 E-value=36 Score=29.93 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=32.9
Q ss_pred ccEEEEE-cCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 7 QLHVFFF-PFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 7 ~~~vl~~-p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
..+|+|+ .-+|.|=..-...||..|+++|++|.++..+.
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4455544 46778999999999999999999999999886
No 66
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=63.22 E-value=7.9 Score=29.41 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=26.2
Q ss_pred CCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 4 KIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 4 ~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.....+|+++-. |.+- ..+++.|.++|++|+++...
T Consensus 16 ~~~~~~v~IiG~---G~iG--~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 16 KQKSKYIVIFGC---GRLG--SLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp -CCCCEEEEECC---SHHH--HHHHHHHHHTTCEEEEEESC
T ss_pred ccCCCcEEEECC---CHHH--HHHHHHHHhCCCeEEEEECC
Confidence 345678998854 4333 56789999999999998754
No 67
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=60.99 E-value=57 Score=29.30 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=23.1
Q ss_pred HHHHHhhhCCCCEEEe--cCCCccHHHHHHHhCCCe
Q 041444 110 PLEQLLRDHKPDCLVA--DIFFPWATDAAAKFGIPR 143 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~--D~~~~~~~~~A~~lgiP~ 143 (367)
.+.++.++.++|.|+. |.....+..+|++||+|.
T Consensus 66 ~~~~~~~~~~id~V~~~~e~~~~~~a~l~e~lglpg 101 (425)
T 3vot_A 66 VVRQTFVEFPFDGVMTLFEPALPFTAKAAEALNLPG 101 (425)
T ss_dssp HHHHHHHHSCCSEEECCCGGGHHHHHHHHHHTTCSS
T ss_pred HHHHhhhhcCCCEEEECCchhHHHHHHHHHHcCCCC
Confidence 3445556678999984 333344567889999983
No 68
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=60.69 E-value=14 Score=29.82 Aligned_cols=40 Identities=15% Similarity=0.032 Sum_probs=32.2
Q ss_pred CccEEEEEcCCCcccHH-HHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 6 PQLHVFFFPFMAHGHMI-PIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~-p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
++.||++--.++ +... =...|.++|.++|++|+++.+...
T Consensus 6 ~~k~I~lgiTGs-~aa~~k~~~ll~~L~~~g~eV~vv~T~~A 46 (201)
T 3lqk_A 6 AGKHVGFGLTGS-HCTYHEVLPQMERLVELGAKVTPFVTHTV 46 (201)
T ss_dssp TTCEEEEECCSC-GGGGGGTHHHHHHHHHTTCEEEEECSSCS
T ss_pred CCCEEEEEEECh-HHHHHHHHHHHHHHhhCCCEEEEEEChhH
Confidence 456888777777 5555 789999999999999999988743
No 69
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=58.66 E-value=18 Score=29.76 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=36.3
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.+.+|++..-||.|=..-++.+|.+|+++|++|.++..+..
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q 45 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETH 45 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence 35688899999999999999999999999999998887653
No 70
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=58.20 E-value=12 Score=30.65 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=28.5
Q ss_pred CCCcEEEEecCCCCCCCHHHHH-----HHHHHHHhCC-CcEEEEEecC
Q 041444 284 QPNSVVYICFGSLANFTSAQLM-----EIATGLEASG-RNFIWVVRKN 325 (367)
Q Consensus 284 ~~~~vIyvsfGS~~~~~~~~~~-----~~~~al~~~~-~~~lW~~~~~ 325 (367)
+++.+|||+.||...++ +.+. +++++|.+.+ .+++|.++..
T Consensus 26 ~~~~~VlVtgGS~~~~n-~li~~vl~~~~l~~L~~~~~~~vv~q~G~~ 72 (224)
T 2jzc_A 26 IEEKALFVTCGATVPFP-KLVSCVLSDEFCQELIQYGFVRLIIQFGRN 72 (224)
T ss_dssp CCSCCEEEECCSCCSCH-HHHHHHTSHHHHHHHHTTTCCCEEECCCSS
T ss_pred CCCCEEEEEcCCchHHH-HHHHHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 34678999999974333 2223 3348888877 7899998754
No 71
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=58.02 E-value=21 Score=25.82 Aligned_cols=38 Identities=21% Similarity=0.454 Sum_probs=25.7
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 150 (367)
+.++..+||+||.|...+ .+..+.+.+ ++|++.++...
T Consensus 42 ~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 42 QQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp HHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCC
Confidence 344567899999998765 355555443 57888776654
No 72
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=56.94 E-value=17 Score=26.80 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=25.7
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh---------CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF---------GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l---------giP~v~~~~~~ 150 (367)
+.++..+||+||.|...+ .+..+.+.+ .+|+++++...
T Consensus 52 ~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~ 100 (143)
T 3m6m_D 52 DAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADV 100 (143)
T ss_dssp HHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCC
T ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCC
Confidence 344567899999998765 356665554 26888776543
No 73
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=55.99 E-value=22 Score=26.87 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=27.6
Q ss_pred CCCCCCccEEEEEcCCC-cccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 1 MGSKIPQLHVFFFPFMA-HGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~-~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
|.+.+.+.-++++.-|- ...+--.+-++..|.++||+|++...+
T Consensus 1 ~~~~~~m~~LilLGCPE~Pvq~p~~lYl~~~Lk~~G~~v~VA~np 45 (157)
T 1kjn_A 1 MKTESTGKALMVLGCPESPVQIPLAIYTSHKLKKKGFRVTVTANP 45 (157)
T ss_dssp -----CCEEEEECCCSCSTTHHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred CccccceeeeEEecCCCCcchhhHHHHHHHHHHhcCCeeEEecCH
Confidence 44433333333444444 355556889999999999999998876
No 74
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=55.71 E-value=24 Score=24.81 Aligned_cols=38 Identities=16% Similarity=0.562 Sum_probs=25.6
Q ss_pred HHhhhCCCCEEEecCCCcc--HHHHHHH----hCCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFPW--ATDAAAK----FGIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~~--~~~~A~~----lgiP~v~~~~~~ 150 (367)
+.+++.+||+||.|...+. +..+.++ .++|++.++...
T Consensus 40 ~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 40 EMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp HHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred HHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 3455678999999987753 5555544 357887776544
No 75
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=55.41 E-value=66 Score=28.03 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=32.5
Q ss_pred cEEEEE-cCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 8 LHVFFF-PFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 8 ~~vl~~-p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.+|+|+ .-+|.|=......||..|+++|.+|.++..+..
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~ 55 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPA 55 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 455544 467789999999999999999999999998854
No 76
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=54.91 E-value=19 Score=28.87 Aligned_cols=36 Identities=11% Similarity=0.054 Sum_probs=29.7
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~r-Gh~Vt~~t~~~ 45 (367)
||++--.++.|-+. ...|.++|.++ |++|.++.+..
T Consensus 2 ~IllgvTGsiaa~k-~~~ll~~L~~~~g~~V~vv~T~~ 38 (197)
T 1sbz_A 2 KLIVGMTGATGAPL-GVALLQALREMPNVETHLVMSKW 38 (197)
T ss_dssp EEEEEECSSSCHHH-HHHHHHHHHTCTTCEEEEEECHH
T ss_pred EEEEEEeChHHHHH-HHHHHHHHHhccCCEEEEEECch
Confidence 67777777766655 89999999999 99999998874
No 77
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=53.09 E-value=14 Score=29.81 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=29.6
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFAT-RGVKASVITTPA 45 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~-rGh~Vt~~t~~~ 45 (367)
++.||++...++.+=+ -...|+++|.+ +|++|.++.+..
T Consensus 18 ~~k~IllgvTGsiaa~-k~~~lv~~L~~~~g~~V~vv~T~~ 57 (206)
T 1qzu_A 18 RKFHVLVGVTGSVAAL-KLPLLVSKLLDIPGLEVAVVTTER 57 (206)
T ss_dssp SSEEEEEEECSSGGGG-THHHHHHHHC---CEEEEEEECTG
T ss_pred CCCEEEEEEeChHHHH-HHHHHHHHHhcccCCEEEEEECHh
Confidence 4568888887776644 45899999999 899999998874
No 78
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=52.93 E-value=8.8 Score=34.62 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=24.9
Q ss_pred CccEEEEEc---CCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFP---FMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p---~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.++||++++ +| .+.-.-...++++|+++| +|++++..
T Consensus 13 ~~MkIl~is~~~~p-~~~~~~~~~l~~~l~~~G-~V~vi~~~ 52 (406)
T 2hy7_A 13 RRPCYLVLSSHDFR-TPRRANIHFITDQLALRG-TTRFFSLR 52 (406)
T ss_dssp CCSCEEEEESSCTT-SSSCCHHHHHHHHHHHHS-CEEEEECS
T ss_pred CCceEEEEecccCC-ChhhhhHhHHHHHHHhCC-ceEEEEec
Confidence 357888887 34 222222345788999999 99999543
No 79
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=52.81 E-value=30 Score=25.50 Aligned_cols=40 Identities=13% Similarity=0.024 Sum_probs=28.4
Q ss_pred ccEEEEEcCCC---cccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 7 QLHVFFFPFMA---HGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 7 ~~~vl~~p~p~---~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
..+++|+-..+ ......-+.+|...+..||+|+++-+...
T Consensus 15 ~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~vFf~~dG 57 (134)
T 3mc3_A 15 XXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFMIXG 57 (134)
T ss_dssp CCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEECTTG
T ss_pred cceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEeCc
Confidence 34666444433 46667788889989999999998776643
No 80
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=52.28 E-value=57 Score=30.24 Aligned_cols=40 Identities=10% Similarity=-0.026 Sum_probs=34.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCCCcc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTPANAP 48 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~r-Gh~Vt~~t~~~~~~ 48 (367)
-+++...|+.|=..-.+++|..++.+ |..|.+++.+...+
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~ 284 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVE 284 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHH
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHH
Confidence 46677889999999999999999987 99999999886543
No 81
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=52.13 E-value=9.6 Score=35.60 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=28.6
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.+|+||+|+-...-| +.+|++|.++|++||++....
T Consensus 40 ~~KprVVIIGgG~AG-----l~~A~~L~~~~~~VtLId~~~ 75 (502)
T 4g6h_A 40 SDKPNVLILGSGWGA-----ISFLKHIDTKKYNVSIISPRS 75 (502)
T ss_dssp CSSCEEEEECSSHHH-----HHHHHHSCTTTCEEEEEESSS
T ss_pred CCCCCEEEECCcHHH-----HHHHHHhhhCCCcEEEECCCC
Confidence 457899999866544 567899999999999998653
No 82
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=51.81 E-value=16 Score=29.58 Aligned_cols=40 Identities=5% Similarity=-0.061 Sum_probs=30.1
Q ss_pred CccEEEEEcCCCcccHHH-HHHHHHHHHhCCCeEEEEeCCCC
Q 041444 6 PQLHVFFFPFMAHGHMIP-IVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p-~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
++.||++.-.++ +...- ...|.++|.++|++|.++.+...
T Consensus 4 ~~k~IllgiTGs-iaayk~~~~ll~~L~~~g~eV~vv~T~~A 44 (207)
T 3mcu_A 4 KGKRIGFGFTGS-HCTYEEVMPHLEKLIAEGAEVRPVVSYTV 44 (207)
T ss_dssp TTCEEEEEECSC-GGGGTTSHHHHHHHHHTTCEEEEEECC--
T ss_pred CCCEEEEEEECh-HHHHHHHHHHHHHHHhCCCEEEEEEehHH
Confidence 456787777666 44544 78999999999999999988743
No 83
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=51.71 E-value=24 Score=28.04 Aligned_cols=37 Identities=5% Similarity=0.075 Sum_probs=30.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.||++.-.++.|-+ =...+.++|.++|++|.++.+..
T Consensus 2 k~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~ 38 (189)
T 2ejb_A 2 QKIALCITGASGVI-YGIKLLQVLEELDFSVDLVISRN 38 (189)
T ss_dssp CEEEEEECSSTTHH-HHHHHHHHHHHTTCEEEEEECHH
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEChh
Confidence 47888888887755 57889999999999999998873
No 84
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=50.32 E-value=71 Score=28.35 Aligned_cols=35 Identities=11% Similarity=0.069 Sum_probs=26.5
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
++..+|+++..... -+.+++.+.+.|++|.++...
T Consensus 5 ~~~~~ilI~g~g~~-----~~~~~~a~~~~G~~~v~v~~~ 39 (403)
T 4dim_A 5 YDNKRLLILGAGRG-----QLGLYKAAKELGIHTIAGTMP 39 (403)
T ss_dssp -CCCEEEEECCCGG-----GHHHHHHHHHHTCEEEEEECS
T ss_pred cCCCEEEEECCcHh-----HHHHHHHHHHCCCEEEEEcCC
Confidence 45678998876653 356899999999999998653
No 85
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=50.31 E-value=20 Score=30.64 Aligned_cols=40 Identities=10% Similarity=0.074 Sum_probs=24.8
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
|....++.+|++.-..| . --.+|+++|+++||+|+.++-.
T Consensus 1 M~~~~~~~~vlVtGatG--~--iG~~l~~~L~~~g~~V~~~~r~ 40 (321)
T 3vps_A 1 MQRNTLKHRILITGGAG--F--IGGHLARALVASGEEVTVLDDL 40 (321)
T ss_dssp ------CCEEEEETTTS--H--HHHHHHHHHHHTTCCEEEECCC
T ss_pred CCcccCCCeEEEECCCC--h--HHHHHHHHHHHCCCEEEEEecC
Confidence 54444566777765433 2 3457899999999999988643
No 86
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=50.19 E-value=35 Score=27.71 Aligned_cols=41 Identities=15% Similarity=-0.010 Sum_probs=32.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCCCCcch
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFA-TRGVKASVITTPANAPY 49 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~-~rGh~Vt~~t~~~~~~~ 49 (367)
-+++..-|+.|=..-.++++...+ +.|..|.+++.+...+.
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~ 73 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARD 73 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHH
Confidence 467888899999999999887654 55888999998765443
No 87
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=49.02 E-value=11 Score=27.95 Aligned_cols=34 Identities=9% Similarity=0.098 Sum_probs=25.5
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
++.||+++-. |. --..+++.|.++||+|+++...
T Consensus 5 ~~~~v~I~G~---G~--iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 5 GRYEYIVIGS---EA--AGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp -CCSEEEECC---SH--HHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEEECC---CH--HHHHHHHHHHHCCCeEEEEECC
Confidence 3457888865 44 3567999999999999988754
No 88
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=48.83 E-value=27 Score=26.22 Aligned_cols=38 Identities=11% Similarity=0.006 Sum_probs=28.1
Q ss_pred cEEEEE-cCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 8 LHVFFF-PFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 8 ~~vl~~-p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.+++|+ .....-...+.+.+|...+..|++|+++-+..
T Consensus 8 ~kl~II~~sg~~d~~~~a~~lA~~Aaa~g~eV~iF~t~~ 46 (144)
T 2qs7_A 8 KKLSIIVFSGTIDKLMPVGILTSGAAASGYEVNLFFTFW 46 (144)
T ss_dssp CEEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEEECHH
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHHHHcCCcEEEEEehH
Confidence 344444 44445677888899999999999999887763
No 89
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=48.60 E-value=18 Score=31.47 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+..||.|+-..+.| |-.+|+.|+++||+|+..=.
T Consensus 3 ~~~~i~~iGiGg~G----ms~~A~~L~~~G~~V~~~D~ 36 (326)
T 3eag_A 3 AMKHIHIIGIGGTF----MGGLAAIAKEAGFEVSGCDA 36 (326)
T ss_dssp CCCEEEEESCCSHH----HHHHHHHHHHTTCEEEEEES
T ss_pred CCcEEEEEEECHHH----HHHHHHHHHhCCCEEEEEcC
Confidence 45689999988877 55799999999999998644
No 90
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=48.34 E-value=24 Score=25.60 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=24.0
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
..+|+++-. |.+- ..+++.|.++||+|+++...
T Consensus 4 ~m~i~IiG~---G~iG--~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGI---GRVG--YTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEECC---SHHH--HHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECC---CHHH--HHHHHHHHhCCCeEEEEECC
Confidence 457888843 5543 46789999999999998653
No 91
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=48.02 E-value=34 Score=25.31 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=25.2
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 150 (367)
+.+++.+||+||.|.... .+..+++.+ ++|+|+++...
T Consensus 45 ~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (154)
T 3gt7_A 45 RFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILS 91 (154)
T ss_dssp HHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCC
T ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCC
Confidence 445667899999998664 355555432 57888776543
No 92
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=47.86 E-value=17 Score=28.63 Aligned_cols=38 Identities=5% Similarity=0.040 Sum_probs=29.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.||++.-.++.+=+ =...+.++|.++|++|.++.+...
T Consensus 3 k~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~A 40 (181)
T 1g63_A 3 GKLLICATASINVI-NINHYIVELKQHFDEVNILFSPSS 40 (181)
T ss_dssp CCEEEEECSCGGGG-GHHHHHHHHTTTSSCEEEEECGGG
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEchhH
Confidence 36777766665444 678999999999999999988743
No 93
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=47.15 E-value=39 Score=24.36 Aligned_cols=37 Identities=22% Similarity=0.392 Sum_probs=24.5
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecc
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGT 149 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~ 149 (367)
+.++..+||+||.|.... .+..+.+.+ ++|++.++..
T Consensus 41 ~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 41 EALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp HHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESS
T ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECC
Confidence 344557899999998665 355555543 4677777654
No 94
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=46.84 E-value=12 Score=31.96 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=22.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
||++.- +.|.+ -.+|+++|.++||+|+.++-.
T Consensus 2 kILVTG--atGfI--G~~L~~~L~~~G~~V~~l~R~ 33 (298)
T 4b4o_A 2 RVLVGG--GTGFI--GTALTQLLNARGHEVTLVSRK 33 (298)
T ss_dssp EEEEET--TTSHH--HHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEEC--CCCHH--HHHHHHHHHHCCCEEEEEECC
Confidence 555543 33433 356899999999999998743
No 95
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=46.41 E-value=1.1e+02 Score=26.69 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=32.9
Q ss_pred ccEEEEE-cCCCcccHHHHHHHHHHHH--hCCCeEEEEeCCCC
Q 041444 7 QLHVFFF-PFMAHGHMIPIVDMAKLFA--TRGVKASVITTPAN 46 (367)
Q Consensus 7 ~~~vl~~-p~p~~gH~~p~l~La~~L~--~rGh~Vt~~t~~~~ 46 (367)
..+|+++ .-+|.|=..-...||..|+ ++|++|.++..+..
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 3455555 4677899999999999999 99999999998843
No 96
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=45.68 E-value=41 Score=23.63 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=25.3
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
+.++..++|+||.|...+ .+..+.+++ ++|++.++...
T Consensus 41 ~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (126)
T 1dbw_A 41 AFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHG 85 (126)
T ss_dssp HHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTT
T ss_pred HHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCC
Confidence 445567899999998664 355555443 57888776554
No 97
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=45.60 E-value=1.6e+02 Score=25.97 Aligned_cols=39 Identities=8% Similarity=0.013 Sum_probs=34.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
-+++..-|+.|-..-.++++..++++|..|.|++++...
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~ 114 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL 114 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh
Confidence 466788899999999999999999999999999988543
No 98
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=45.42 E-value=1.7e+02 Score=26.46 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=34.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCCCcc
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFAT-RGVKASVITTPANAP 48 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~-rGh~Vt~~t~~~~~~ 48 (367)
--+++..-||.|=..-++.++..++. .|..|.+++.+....
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~ 245 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQ 245 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHH
Confidence 35778889999999999999999986 689999999875443
No 99
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=44.96 E-value=21 Score=31.73 Aligned_cols=37 Identities=8% Similarity=0.015 Sum_probs=27.7
Q ss_pred cEEEEEc--CC-CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 8 LHVFFFP--FM-AHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 8 ~~vl~~p--~p-~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+||+++. +| .-|--.-+..|+++|+++ |+|++++...
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~ 40 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHA 40 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESC
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecC
Confidence 3677664 23 236667789999999999 9999988653
No 100
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=44.62 E-value=17 Score=30.02 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 041444 24 IVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t~~ 44 (367)
-.++|++|++||++|++++..
T Consensus 32 G~aiA~~~~~~Ga~V~lv~~~ 52 (232)
T 2gk4_A 32 GKIITETLLSAGYEVCLITTK 52 (232)
T ss_dssp HHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 467899999999999999865
No 101
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=44.53 E-value=14 Score=31.74 Aligned_cols=38 Identities=16% Similarity=0.102 Sum_probs=25.5
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
|.....+.+|+|+-....| ..+++.|+++||+|+++..
T Consensus 1 M~~~~~~~~I~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr 38 (303)
T 3g0o_A 1 MSLTGTDFHVGIVGLGSMG-----MGAARSCLRAGLSTWGADL 38 (303)
T ss_dssp ------CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred CCCCCCCCeEEEECCCHHH-----HHHHHHHHHCCCeEEEEEC
Confidence 4334456789999665555 4688999999999998854
No 102
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=44.44 E-value=52 Score=23.28 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=23.6
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecc
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGT 149 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~ 149 (367)
+.+++.+||+||.|.... .+..+.+.+ ++|+|.++..
T Consensus 41 ~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 41 QQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp HHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESC
T ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCC
Confidence 344557899999998664 344444321 5788777654
No 103
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=44.40 E-value=37 Score=24.37 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=25.3
Q ss_pred HHhhhCCCCEEEecCCCc---cHHHHHHHh----CCCeEEEecchh
Q 041444 113 QLLRDHKPDCLVADIFFP---WATDAAAKF----GIPRLVFHGTSF 151 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~---~~~~~A~~l----giP~v~~~~~~~ 151 (367)
+.++..+||+||.|.... .+..+.+.+ ++|+|+++....
T Consensus 48 ~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~ 93 (140)
T 3cg0_A 48 RCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQD 93 (140)
T ss_dssp HHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCCC
T ss_pred HHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCCC
Confidence 344456799999997553 355544443 689888766543
No 104
>1f9y_A HPPK, protein (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase); pyrophosphoryl transfer, catalytic mechanism, folate, ternary complex; HET: APC HHR; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1eqm_A* 1hka_A 1q0n_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 3h4a_A* 3ip0_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A ...
Probab=44.23 E-value=23 Score=27.24 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=23.4
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCC
Q 041444 288 VVYICFGSLANFTSAQLMEIATGLEASG 315 (367)
Q Consensus 288 vIyvsfGS~~~~~~~~~~~~~~al~~~~ 315 (367)
.+|+|+||...-+.+.++..+++|++.+
T Consensus 2 ~~~i~LGSNlGd~~~~l~~A~~~L~~~~ 29 (158)
T 1f9y_A 2 VAYIAIGSNLASPLEQVNAALKALGDIP 29 (158)
T ss_dssp EEEEEEEECSSCHHHHHHHHHHHHHTST
T ss_pred EEEEEEecCccCHHHHHHHHHHHHhcCC
Confidence 5899999998767778888888888764
No 105
>2qx0_A 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; 3-layered alpha-BATA-alpha fold, homodimer, ternary complex, transferase; HET: APC PH2; 1.80A {Yersinia pestis}
Probab=43.91 E-value=30 Score=26.57 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=24.5
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCC
Q 041444 288 VVYICFGSLANFTSAQLMEIATGLEASGR 316 (367)
Q Consensus 288 vIyvsfGS~~~~~~~~~~~~~~al~~~~~ 316 (367)
.+|+++||...-+.+.++...++|++.+.
T Consensus 3 ~~~i~LGSNlGd~~~~l~~A~~~L~~~~~ 31 (159)
T 2qx0_A 3 RVYIALGSNLAMPLQQVSAAREALAHLPR 31 (159)
T ss_dssp EEEEEEEECSSSCHHHHHHHHHHHHTCTT
T ss_pred EEEEEEeCchhhHHHHHHHHHHHHhcCCC
Confidence 48999999997788888888999988643
No 106
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=43.52 E-value=61 Score=22.14 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=23.9
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecc
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGT 149 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~ 149 (367)
+.++..+||+||.|.... .+..+.+.+ ++|++.++..
T Consensus 39 ~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 39 KKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp HHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 344556899999998664 355544433 4677777654
No 107
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=43.32 E-value=56 Score=23.08 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=23.1
Q ss_pred hCCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecch
Q 041444 117 DHKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGTS 150 (367)
Q Consensus 117 ~~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 150 (367)
..++|+||.|...+ .+..+++.+ ++|++.++...
T Consensus 49 ~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (129)
T 3h1g_A 49 NADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEG 91 (129)
T ss_dssp CTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCC
Confidence 34799999998765 356665543 46787776554
No 108
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=43.05 E-value=30 Score=29.23 Aligned_cols=43 Identities=14% Similarity=0.093 Sum_probs=22.0
Q ss_pred CCCCCCccEEE-EEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 1 MGSKIPQLHVF-FFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 1 m~~~~~~~~vl-~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
|.+.....+|+ |.|.|-- =..-+-.+...++++|++|++++-.
T Consensus 1 ~~~~~~~~rvLvv~aHPDD-e~lg~GGtia~~~~~G~~V~vv~~T 44 (273)
T 3dff_A 1 MPHDPGATRLLAISPHLDD-AVLSFGAGLAQAAQDGANVLVYTVF 44 (273)
T ss_dssp -------CEEEEEESSTTH-HHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred CCCCCCCCCEEEEEeCCCh-HHHhHHHHHHHHHHCCCcEEEEEEe
Confidence 55555555655 5555531 1233345666777899999988743
No 109
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=42.91 E-value=44 Score=24.56 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=25.3
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecchh
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTSF 151 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~~ 151 (367)
+.++..+||+||.|.... .+..+.+.+ ++|+|+++....
T Consensus 45 ~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 90 (154)
T 2rjn_A 45 EALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYAD 90 (154)
T ss_dssp HHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGG
T ss_pred HHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 445567899999997654 345444433 578887766543
No 110
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=42.79 E-value=33 Score=33.66 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=50.7
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCCCCCCcCCCchhHHHhhC------CCceEecCcc
Q 041444 284 QPNSVVYICFGSLANFTSAQLMEIATGLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGFEKRME------GKGLIIRGWA 357 (367)
Q Consensus 284 ~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~~~~~~------~~g~vv~~W~ 357 (367)
+++.|||-||.+...++++.++.-++-|++.+..+||-++.+.. --+++.++.. +| +++.+++
T Consensus 520 p~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~----------~~~~l~~~~~~~gi~~~r-~~f~~~~ 588 (723)
T 4gyw_A 520 PEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV----------GEPNIQQYAQNMGLPQNR-IIFSPVA 588 (723)
T ss_dssp CTTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGG----------GHHHHHHHHHHTTCCGGG-EEEEECC
T ss_pred CCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHH----------HHHHHHHHHHhcCCCcCe-EEECCCC
Confidence 45779999999999999999999999999999999999876421 1133333322 34 3444788
Q ss_pred cHHHhhc
Q 041444 358 PQVLILD 364 (367)
Q Consensus 358 PQ~~vL~ 364 (367)
|..+-|+
T Consensus 589 ~~~~~l~ 595 (723)
T 4gyw_A 589 PKEEHVR 595 (723)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 8777553
No 111
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=42.46 E-value=46 Score=23.00 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=24.2
Q ss_pred hhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecchh
Q 041444 115 LRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTSF 151 (367)
Q Consensus 115 l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~~ 151 (367)
++..+||+||.|.... .+..+.+++ ++|++.++....
T Consensus 43 ~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 86 (120)
T 1tmy_A 43 YKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQ 86 (120)
T ss_dssp HHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTC
T ss_pred HHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCC
Confidence 3445799999998765 355555443 578877765543
No 112
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=42.09 E-value=8.7 Score=33.06 Aligned_cols=40 Identities=13% Similarity=0.005 Sum_probs=29.1
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
|...++..+|+++-....| +..|..|+++|++|+++-...
T Consensus 1 M~~~~~~~~vvIIG~G~aG-----l~aA~~l~~~g~~v~lie~~~ 40 (332)
T 3lzw_A 1 MREDTKVYDITIIGGGPVG-----LFTAFYGGMRQASVKIIESLP 40 (332)
T ss_dssp CEEEEEEEEEEEECCSHHH-----HHHHHHHHHTTCCEEEECSSS
T ss_pred CCCCCccceEEEECCCHHH-----HHHHHHHHHCCCCEEEEEcCC
Confidence 4333445688888766544 678889999999999997643
No 113
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=41.43 E-value=50 Score=22.92 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=24.9
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh----CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF----GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l----giP~v~~~~~~ 150 (367)
+.++..+||+||.|.... .+..+.+.+ .+|++.++...
T Consensus 40 ~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 40 EIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp HHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSC
T ss_pred HHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCC
Confidence 444556899999997664 355555554 46777765543
No 114
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=41.37 E-value=60 Score=22.84 Aligned_cols=38 Identities=8% Similarity=0.145 Sum_probs=26.9
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
|...+++.+|+++- .+-.-...+.+.|.+.|++|+.++
T Consensus 1 M~~~~~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~ 38 (130)
T 3eod_A 1 MTQPLVGKQILIVE----DEQVFRSLLDSWFSSLGATTVLAA 38 (130)
T ss_dssp --CTTTTCEEEEEC----SCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCCCCCCeEEEEe----CCHHHHHHHHHHHHhCCceEEEeC
Confidence 66666778888886 566667777888888898887644
No 115
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=41.23 E-value=51 Score=26.72 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=25.9
Q ss_pred CccEEEEEcCCCcc----cHHHHHHHHHHHHhCCCeEEEE
Q 041444 6 PQLHVFFFPFMAHG----HMIPIVDMAKLFATRGVKASVI 41 (367)
Q Consensus 6 ~~~~vl~~p~p~~g----H~~p~l~La~~L~~rGh~Vt~~ 41 (367)
+..+|.+++....+ ...-...|+++|+++|+.|+.-
T Consensus 12 ~m~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~~G~~vVsG 51 (215)
T 2a33_A 12 KFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYG 51 (215)
T ss_dssp SCSEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCeEEEEECCCCCCchHHHHHHHHHHHHHHHCCCEEEEC
Confidence 34579999666553 2356788999999999887643
No 116
>3ip0_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; alpha beta, ATP-binding, folate biosynthesis, nucleotide-binding; HET: APC HHR HHS; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1hka_A 1eqm_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 1q0n_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A 1kbr_A 1hq2_A* ...
Probab=41.20 E-value=30 Score=26.59 Aligned_cols=29 Identities=24% Similarity=0.198 Sum_probs=22.8
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCC
Q 041444 288 VVYICFGSLANFTSAQLMEIATGLEASGR 316 (367)
Q Consensus 288 vIyvsfGS~~~~~~~~~~~~~~al~~~~~ 316 (367)
+.|+|+||...-+.+.++.....|++.+.
T Consensus 2 iAyi~lGSNlGd~~~~l~~A~~~L~~~~~ 30 (158)
T 3ip0_A 2 VAYIAIGSNLASPLEQVNAALKALGDIPE 30 (158)
T ss_dssp EEEEEEEECSSCHHHHHHHHHHHHHTSTT
T ss_pred EEEEEEecchhhHHHHHHHHHHHHHcCCC
Confidence 57999999987666778888888887543
No 117
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=40.86 E-value=24 Score=28.76 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=32.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+|+|..-+|.|=..-...||..|+++|++|.++-.+.
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5788777788999999999999999999999887665
No 118
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=40.78 E-value=43 Score=24.63 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=25.1
Q ss_pred HHHhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 112 EQLLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 112 ~~~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
.+.++..+||+||.|.... .+..+.+.+ ++|+|+++...
T Consensus 51 ~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 51 LQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDP 96 (153)
T ss_dssp HHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCC
T ss_pred HHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCC
Confidence 3455667899999998664 355544432 57777766543
No 119
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=40.74 E-value=18 Score=31.42 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=25.9
Q ss_pred CCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 2 GSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 2 ~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
++.++..+|+|+-.+..| ..+|..|+++||+|+++...
T Consensus 1 m~~~~~~kI~vIGaG~MG-----~~iA~~la~~G~~V~l~d~~ 38 (319)
T 2dpo_A 1 MASPAAGDVLIVGSGLVG-----RSWAMLFASGGFRVKLYDIE 38 (319)
T ss_dssp ------CEEEEECCSHHH-----HHHHHHHHHTTCCEEEECSC
T ss_pred CCCCCCceEEEEeeCHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 044567789999776555 46788999999999998654
No 120
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=40.69 E-value=52 Score=24.04 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=26.5
Q ss_pred HHHHHhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 110 PLEQLLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
...+.+++.+||+||.|.... .+..+.+.+ ++|+|+++...
T Consensus 57 ~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 57 EAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFK 104 (150)
T ss_dssp HHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 344455667899999998654 355554432 46777776554
No 121
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=40.55 E-value=18 Score=31.09 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=26.4
Q ss_pred CCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 4 KIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 4 ~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.....+|.|+-....| ..+++.|+++||+|+++..
T Consensus 6 ~~~~~~IgiIG~G~mG-----~~~A~~l~~~G~~V~~~dr 40 (306)
T 3l6d_A 6 ESFEFDVSVIGLGAMG-----TIMAQVLLKQGKRVAIWNR 40 (306)
T ss_dssp CCCSCSEEEECCSHHH-----HHHHHHHHHTTCCEEEECS
T ss_pred ccCCCeEEEECCCHHH-----HHHHHHHHHCCCEEEEEeC
Confidence 3446789999665544 4688999999999998753
No 122
>3qbc_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; protein-inhibitor complex, ferredoxin-like fold; HET: B55; 1.65A {Staphylococcus aureus}
Probab=40.18 E-value=28 Score=26.78 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=23.2
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCC
Q 041444 288 VVYICFGSLANFTSAQLMEIATGLEASG 315 (367)
Q Consensus 288 vIyvsfGS~~~~~~~~~~~~~~al~~~~ 315 (367)
.+|+++||...-+.+.++..+++|++.+
T Consensus 6 ~v~i~LGSNlGd~~~~l~~A~~~L~~~~ 33 (161)
T 3qbc_A 6 QAYLGLGSNIGDRESQLNDAIKILNEYD 33 (161)
T ss_dssp EEEEEEEECSSSHHHHHHHHHHHHHHST
T ss_pred EEEEEEecCccCHHHHHHHHHHHHhcCC
Confidence 5999999998767778888888888754
No 123
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=39.96 E-value=44 Score=23.81 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=24.3
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
+.++..+||+||.|...+ .+..+.+.+ ++|+|.++...
T Consensus 43 ~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~ 87 (133)
T 3b2n_A 43 KLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFK 87 (133)
T ss_dssp HHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCC
Confidence 344456799999998664 355554443 46777776554
No 124
>1cbk_A Protein (7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase); transferase; HET: ROI; 2.02A {Haemophilus influenzae} SCOP: d.58.30.1
Probab=39.80 E-value=29 Score=26.68 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=23.6
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCC
Q 041444 288 VVYICFGSLANFTSAQLMEIATGLEASGR 316 (367)
Q Consensus 288 vIyvsfGS~~~~~~~~~~~~~~al~~~~~ 316 (367)
.+|+++||...-+.+.++...++|++.+.
T Consensus 3 ~~~i~LGSNlGd~~~~l~~A~~~L~~~~~ 31 (160)
T 1cbk_A 3 TAYIALGSNLNTPVEQLHAALKAISQLSN 31 (160)
T ss_dssp EEEEEEEECSSCHHHHHHHHHHHHHTSTT
T ss_pred EEEEEEeccchHHHHHHHHHHHHHhhCCC
Confidence 48999999987677788888888887643
No 125
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=39.68 E-value=34 Score=29.52 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=27.0
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+..+|+|+-.+..| ..+++.|+++||+|+++...
T Consensus 30 ~~~~I~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr~ 63 (320)
T 4dll_A 30 YARKITFLGTGSMG-----LPMARRLCEAGYALQVWNRT 63 (320)
T ss_dssp CCSEEEEECCTTTH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CCCEEEEECccHHH-----HHHHHHHHhCCCeEEEEcCC
Confidence 34689999777666 66889999999999987543
No 126
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=39.54 E-value=61 Score=22.76 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=24.0
Q ss_pred HHhhhC-CCCEEEecCCCc---cHHHHHHHh-----CCCeEEEecch
Q 041444 113 QLLRDH-KPDCLVADIFFP---WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~-~~D~vi~D~~~~---~~~~~A~~l-----giP~v~~~~~~ 150 (367)
+.++.. +||+||.|.... .+..+.+.+ ++|+|+++...
T Consensus 43 ~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 43 EMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp HHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred HHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCc
Confidence 344555 899999997553 344444433 57888876543
No 127
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=39.39 E-value=41 Score=28.34 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=22.9
Q ss_pred CCCCCCccEEE-EEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 1 MGSKIPQLHVF-FFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 1 m~~~~~~~~vl-~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
|.+.....+|+ |.|.|-- =..-+-.+...++++|++|++++-.
T Consensus 1 ~~~~~~~~rvLvv~aHPDD-e~l~~GGtia~~~~~G~~V~vv~~T 44 (270)
T 3dfi_A 1 MLQDADRTRILAISPHLDD-AVLSVGASLAQAEQDGGKVTVFTVF 44 (270)
T ss_dssp -----CCSEEEEEESSTTH-HHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCCCCCEEEEEeCCch-HHHhhHHHHHHHHhCCCeEEEEEEe
Confidence 55555555655 5555531 1233445666777899999987743
No 128
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=39.21 E-value=63 Score=26.76 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=27.4
Q ss_pred ccEEEEEcCCCc----------cc-HHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAH----------GH-MIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~----------gH-~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+.||+++-.... |- ..=+..-...|.+.|++|+++++.
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~ 57 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASET 57 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467887766532 22 344667778899999999999975
No 129
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=39.21 E-value=62 Score=22.40 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=24.2
Q ss_pred HhhhCCCCEEEecCCCc--cHHHHHHHh----CCCeEEEecch
Q 041444 114 LLRDHKPDCLVADIFFP--WATDAAAKF----GIPRLVFHGTS 150 (367)
Q Consensus 114 ~l~~~~~D~vi~D~~~~--~~~~~A~~l----giP~v~~~~~~ 150 (367)
.++..++|+||.|.... .+..+++.+ ++|++.++...
T Consensus 42 ~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 84 (123)
T 1xhf_A 42 ILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRD 84 (123)
T ss_dssp HHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESCC
T ss_pred HHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECCC
Confidence 44556899999998664 355554443 57777766543
No 130
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=39.19 E-value=71 Score=21.95 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=24.7
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
+.++..+||++|.|.... .+..+.+.+ ++|++.++...
T Consensus 38 ~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 82 (121)
T 2pl1_A 38 YYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARE 82 (121)
T ss_dssp HHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCC
T ss_pred HHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCC
Confidence 344557899999998664 355444432 47888776554
No 131
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=39.15 E-value=49 Score=23.78 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=23.9
Q ss_pred HHhhhCCCCEEEecCCCcc--HHHHHHHh-----CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFPW--ATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~~--~~~~A~~l-----giP~v~~~~~~ 150 (367)
+.++..+||+||.|. ... +..+.+.+ ++|+|+++...
T Consensus 42 ~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~ 85 (142)
T 2qxy_A 42 TFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYV 85 (142)
T ss_dssp HHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred HHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCC
Confidence 445567899999998 643 34444332 57888876553
No 132
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=39.13 E-value=40 Score=28.34 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=29.3
Q ss_pred HHHHHhhhCCCCEEEecCCCc------cHHHHHHHhCCCeEEEecc
Q 041444 110 PLEQLLRDHKPDCLVADIFFP------WATDAAAKFGIPRLVFHGT 149 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~~------~~~~~A~~lgiP~v~~~~~ 149 (367)
.+.++++..+||+|++-.... -+..+|++||+|.+...+.
T Consensus 103 ~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 148 (264)
T 1o97_C 103 ILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVAD 148 (264)
T ss_dssp HHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCcccceEE
Confidence 344455555799999876552 3678999999999987654
No 133
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=39.04 E-value=17 Score=26.95 Aligned_cols=33 Identities=12% Similarity=0.072 Sum_probs=25.8
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+.||+++-++-. -..+++.|.++||+|+++...
T Consensus 7 ~~~viIiG~G~~-----G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 7 CNHALLVGYGRV-----GSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CSCEEEECCSHH-----HHHHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEECcCHH-----HHHHHHHHHHCCCCEEEEECC
Confidence 567888865433 357899999999999999865
No 134
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=39.03 E-value=50 Score=23.72 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=25.3
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh----CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF----GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l----giP~v~~~~~~ 150 (367)
+.++..+||+||.|.... .+..+.+.+ .+|+|.++...
T Consensus 42 ~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~ 85 (136)
T 2qzj_A 42 GKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYIN 85 (136)
T ss_dssp HHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCC
Confidence 344556899999998664 355555544 57887776554
No 135
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=39.02 E-value=58 Score=22.37 Aligned_cols=37 Identities=19% Similarity=0.443 Sum_probs=24.2
Q ss_pred hhhCCCCEEEecCCCc--cHHHHHHH----hCCCeEEEecchh
Q 041444 115 LRDHKPDCLVADIFFP--WATDAAAK----FGIPRLVFHGTSF 151 (367)
Q Consensus 115 l~~~~~D~vi~D~~~~--~~~~~A~~----lgiP~v~~~~~~~ 151 (367)
++..+||+||.|.... .+..+++. -.+|++.++....
T Consensus 41 ~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~ 83 (120)
T 2a9o_A 41 FEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKDS 83 (120)
T ss_dssp HHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCCS
T ss_pred HHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCCc
Confidence 3445799999998664 35544443 3578888766543
No 136
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=38.93 E-value=68 Score=23.07 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=24.8
Q ss_pred HHhhhCCCCEEEecCCCcc--HHHHHHHh-------CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFPW--ATDAAAKF-------GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~~--~~~~A~~l-------giP~v~~~~~~ 150 (367)
+.++..+||+||.|..... +..+.+.+ ++|+|+++...
T Consensus 45 ~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 45 YQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNV 91 (144)
T ss_dssp HHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTC
T ss_pred HHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCC
Confidence 4455678999999987653 55544432 46777776543
No 137
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=38.89 E-value=34 Score=28.51 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=25.5
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.+.++++++..+.| --.++|++|+++|++|.++..
T Consensus 23 m~~~k~vlITGas~g---IG~a~a~~l~~~G~~V~~~~~ 58 (272)
T 4e3z_A 23 MSDTPVVLVTGGSRG---IGAAVCRLAARQGWRVGVNYA 58 (272)
T ss_dssp -CCSCEEEETTTTSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred ccCCCEEEEECCCch---HHHHHHHHHHHCCCEEEEEcC
Confidence 334567777766532 457899999999999987643
No 138
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=38.68 E-value=17 Score=29.61 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCeEEEEe
Q 041444 24 IVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t 42 (367)
=+.+|..|+++|++|+++=
T Consensus 14 GL~aA~~La~~G~~V~v~E 32 (336)
T 3kkj_A 14 GLSAAQALTAAGHQVHLFD 32 (336)
T ss_dssp HHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHCCCCEEEEE
Confidence 3788999999999999984
No 139
>2va0_A ABFS arabinofuranosidase two component system SEN protein; kinase, PAS domain, transferase; 2.60A {Cellvibrio japonicus}
Probab=38.58 E-value=2.9 Score=29.31 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=31.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCCCCCCcCCCchhH
Q 041444 294 GSLANFTSAQLMEIATGLEASGRNFIWVVRKNKNDGGEGGKEDWLPEGF 342 (367)
Q Consensus 294 GS~~~~~~~~~~~~~~al~~~~~~~lW~~~~~~~~~~~~~~~~~lp~n~ 342 (367)
|.+.+-+.+++.+++++..+-..+|+|-+..+.+ +-++..+|.++
T Consensus 18 ~~~~N~~~q~L~~~i~~~~~~~~~~V~i~DR~~~----DLL~~~~P~~i 62 (131)
T 2va0_A 18 GNAINRNTQQLTQDLRAMPNWSLRFVYIVDRNNQ----DLLKRPLPPGI 62 (131)
T ss_dssp HHHTTCCHHHHHHHHHTSCHHHHTTEEEECTTSC----BTTCCCCCTTH
T ss_pred HHHhcCcHHHHHHHHHhCcchhheeEEEEccCch----hHHhCCCCCce
Confidence 4455678899998888876666789999965432 23444688886
No 140
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=38.54 E-value=42 Score=31.84 Aligned_cols=45 Identities=7% Similarity=-0.056 Sum_probs=38.2
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchh
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 50 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~ 50 (367)
.+.+|++.+.++-.|-....-++..|..+|++|..+...-..+.+
T Consensus 97 ~~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~i 141 (579)
T 3bul_A 97 TNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKI 141 (579)
T ss_dssp CSCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 367999999999999999999999999999999988765433333
No 141
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=38.19 E-value=22 Score=31.49 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=22.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEE
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVI 41 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~ 41 (367)
+||+|+-.+--| +.+|..|+++|++|+++
T Consensus 2 m~V~IVGaGpaG-----l~~A~~L~~~G~~v~v~ 30 (412)
T 4hb9_A 2 MHVGIIGAGIGG-----TCLAHGLRKHGIKVTIY 30 (412)
T ss_dssp CEEEEECCSHHH-----HHHHHHHHHTTCEEEEE
T ss_pred CEEEEECcCHHH-----HHHHHHHHhCCCCEEEE
Confidence 577777544333 78889999999999998
No 142
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=38.08 E-value=47 Score=23.77 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=24.6
Q ss_pred HHhhhCCCCEEEecCCCc-------cHHHHHHHh-----CCCeEEEecchh
Q 041444 113 QLLRDHKPDCLVADIFFP-------WATDAAAKF-----GIPRLVFHGTSF 151 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~-------~~~~~A~~l-----giP~v~~~~~~~ 151 (367)
+.++..++|+||.|.... .+..+.+.+ ++|+|+++....
T Consensus 41 ~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 91 (140)
T 2qr3_A 41 TVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYAD 91 (140)
T ss_dssp HHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGG
T ss_pred HHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCC
Confidence 344556899999997653 344444332 578888765543
No 143
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=38.02 E-value=46 Score=23.37 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=23.7
Q ss_pred HHHhhhCCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecc
Q 041444 112 EQLLRDHKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGT 149 (367)
Q Consensus 112 ~~~l~~~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~ 149 (367)
.+.+++.+||+||.|.... .+..+.+++ ++|+|+++..
T Consensus 40 ~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 40 LHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp HHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECC
Confidence 3445567899999998654 355554432 3566666544
No 144
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=37.96 E-value=1.6e+02 Score=23.76 Aligned_cols=39 Identities=26% Similarity=0.203 Sum_probs=23.0
Q ss_pred CCCCccEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEEEeCC
Q 041444 3 SKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRG--VKASVITTP 44 (367)
Q Consensus 3 ~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rG--h~Vt~~t~~ 44 (367)
|..++.||+++.+.. ||. +.+|.+++.+.+ ++|..+.+.
T Consensus 4 ~~~~~~ri~vl~SG~-gsn--l~all~~~~~~~~~~~I~~Vis~ 44 (215)
T 3kcq_A 4 SMKKELRVGVLISGR-GSN--LEALAKAFSTEESSVVISCVISN 44 (215)
T ss_dssp ---CCEEEEEEESSC-CHH--HHHHHHHTCCC-CSEEEEEEEES
T ss_pred CCCCCCEEEEEEECC-cHH--HHHHHHHHHcCCCCcEEEEEEeC
Confidence 344577899888766 443 555666665543 688766654
No 145
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=37.90 E-value=37 Score=28.40 Aligned_cols=33 Identities=9% Similarity=0.178 Sum_probs=24.7
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+.+|++.- + | .--..|+++|+++||+|+.++-.
T Consensus 3 ~~~ilVtG--a-G--~iG~~l~~~L~~~g~~V~~~~r~ 35 (286)
T 3gpi_A 3 LSKILIAG--C-G--DLGLELARRLTAQGHEVTGLRRS 35 (286)
T ss_dssp CCCEEEEC--C-S--HHHHHHHHHHHHTTCCEEEEECT
T ss_pred CCcEEEEC--C-C--HHHHHHHHHHHHCCCEEEEEeCC
Confidence 35677774 3 5 34568899999999999988743
No 146
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=37.87 E-value=43 Score=27.97 Aligned_cols=40 Identities=18% Similarity=0.095 Sum_probs=28.9
Q ss_pred HHHHHhhhCCCCEEEecCCCc------cHHHHHHHhCCCeEEEecc
Q 041444 110 PLEQLLRDHKPDCLVADIFFP------WATDAAAKFGIPRLVFHGT 149 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~~------~~~~~A~~lgiP~v~~~~~ 149 (367)
.+.++++..+||+|++-.... -+..+|++||+|.+...+.
T Consensus 107 ~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~vt~v~~ 152 (255)
T 1efv_B 107 VLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQ 152 (255)
T ss_dssp HHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCCCcccceEE
Confidence 344444545799999876552 3678999999999987654
No 147
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=37.78 E-value=31 Score=29.66 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=26.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.+|.|+-....|. ++|+.|+++||+|+++.-
T Consensus 4 ~kIgfIGlG~MG~-----~mA~~L~~~G~~v~v~dr 34 (300)
T 3obb_A 4 KQIAFIGLGHMGA-----PMATNLLKAGYLLNVFDL 34 (300)
T ss_dssp CEEEEECCSTTHH-----HHHHHHHHTTCEEEEECS
T ss_pred CEEEEeeehHHHH-----HHHHHHHhCCCeEEEEcC
Confidence 4799999888885 689999999999998853
No 148
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=37.64 E-value=50 Score=22.96 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=22.1
Q ss_pred HhhhCCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecc
Q 041444 114 LLRDHKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGT 149 (367)
Q Consensus 114 ~l~~~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~ 149 (367)
.++..+||+||.|.... .+..+.+.+ .+|++.++..
T Consensus 40 ~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 84 (124)
T 1mb3_A 40 IARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAF 84 (124)
T ss_dssp HHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC--
T ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECC
Confidence 33445799999998664 355555433 4677776544
No 149
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=37.62 E-value=56 Score=23.63 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=22.8
Q ss_pred HhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecc
Q 041444 114 LLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGT 149 (367)
Q Consensus 114 ~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~ 149 (367)
.++..+||+||.|...+ .+..+++.+ ++|+|.++..
T Consensus 44 ~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~ 86 (141)
T 3cu5_A 44 IALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGY 86 (141)
T ss_dssp HHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCS
T ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCC
Confidence 44556899999998664 355555443 4666665443
No 150
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=37.44 E-value=48 Score=23.13 Aligned_cols=36 Identities=14% Similarity=0.352 Sum_probs=23.3
Q ss_pred hhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 115 LRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 115 l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
++..+||+||.|.... .+..+++++ ++|++.++...
T Consensus 43 ~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (124)
T 1srr_A 43 VTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYG 85 (124)
T ss_dssp HHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccC
Confidence 3445799999998664 355554443 57877776553
No 151
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=37.17 E-value=47 Score=23.83 Aligned_cols=38 Identities=8% Similarity=0.158 Sum_probs=24.5
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 150 (367)
+.++..+||+||.|.... .+..+.+.+ ++|+|+++...
T Consensus 44 ~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 44 EQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANA 90 (140)
T ss_dssp HHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTH
T ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 344567899999998664 355554432 46777765543
No 152
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=37.08 E-value=67 Score=22.74 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=24.3
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
+.++..+||+||.|.... .+..+.+.+ ++|++.++...
T Consensus 41 ~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (132)
T 3crn_A 41 AKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYA 85 (132)
T ss_dssp HHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCC
T ss_pred HHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEeccc
Confidence 344556899999998664 355444433 46777776553
No 153
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=37.05 E-value=62 Score=26.21 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=25.9
Q ss_pred ccEEEEEcCCCcc----cHHHHHHHHHHHHhCCCeEEEE
Q 041444 7 QLHVFFFPFMAHG----HMIPIVDMAKLFATRGVKASVI 41 (367)
Q Consensus 7 ~~~vl~~p~p~~g----H~~p~l~La~~L~~rGh~Vt~~ 41 (367)
..+|.++.....+ +..-...|++.|+++|+.|..-
T Consensus 9 m~~V~V~ggsr~~~~~~~~~~A~~lg~~LA~~g~~lV~G 47 (216)
T 1ydh_A 9 FRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYG 47 (216)
T ss_dssp CSEEEEECCSCCCSSHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCeEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEEC
Confidence 4579999765543 4467889999999999987543
No 154
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=36.60 E-value=41 Score=25.94 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=25.3
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
+.++..+||+||.|...+ .+..+++.+ ++|+|+++...
T Consensus 45 ~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~ 89 (184)
T 3rqi_A 45 KLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYA 89 (184)
T ss_dssp HHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 455667899999998765 355554432 57877776654
No 155
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=36.56 E-value=60 Score=25.62 Aligned_cols=44 Identities=11% Similarity=-0.089 Sum_probs=35.1
Q ss_pred CCCCCCccEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 1 MGSKIPQLHVFFFPFM-AHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p-~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
|-....+.+|.++..+ +.|=..-++.+++++..+|.+|.++.+.
T Consensus 1 ~~~~~~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 1 MYRPKDHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp -CCCTTCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCcCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 3333455677777777 8899999999999999999999999754
No 156
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=36.54 E-value=1.7e+02 Score=23.78 Aligned_cols=36 Identities=6% Similarity=0.007 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~r--Gh~Vt~~t~~ 44 (367)
++.||+|+.+.. |+ .+.++.++|.+. +++|..+.+.
T Consensus 21 ~~~rI~~l~SG~-g~--~~~~~l~~l~~~~~~~~I~~Vvt~ 58 (229)
T 3auf_A 21 HMIRIGVLISGS-GT--NLQAILDGCREGRIPGRVAVVISD 58 (229)
T ss_dssp TCEEEEEEESSC-CH--HHHHHHHHHHTTSSSEEEEEEEES
T ss_pred CCcEEEEEEeCC-cH--HHHHHHHHHHhCCCCCeEEEEEcC
Confidence 456899987666 33 366777788876 6788655544
No 157
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=36.42 E-value=2.2e+02 Score=24.96 Aligned_cols=39 Identities=15% Similarity=0.031 Sum_probs=33.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
-++++-.|+.|=..-+++++..++..|..|.|++++...
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 466777889999999999999999999999999887543
No 158
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=36.00 E-value=59 Score=22.78 Aligned_cols=37 Identities=5% Similarity=0.165 Sum_probs=23.6
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecc
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGT 149 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~ 149 (367)
+.++..++|+||.|.... .+..+.+.+ ++|++.++..
T Consensus 45 ~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 90 (129)
T 1p6q_A 45 KIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQ 90 (129)
T ss_dssp HHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSC
T ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCC
Confidence 344556899999998665 356666554 3455655444
No 159
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=35.79 E-value=73 Score=24.61 Aligned_cols=39 Identities=5% Similarity=0.002 Sum_probs=33.1
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
...+++...++.|=..-+..|+++|.++|++|.++....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 345778888889999999999999999999999888653
No 160
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=35.69 E-value=81 Score=23.00 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=24.4
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
+.++..+||+||.|.... .+..+.+.+ ++|+|+++...
T Consensus 45 ~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 45 RLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp HHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCC
Confidence 344556899999997654 344444432 57888876554
No 161
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=35.60 E-value=67 Score=25.92 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=24.0
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
|....+..++++.- .+ | .--.+++++|+++|++|+++.-
T Consensus 1 m~~~~~~~~vlVTG-as-g--giG~~~a~~l~~~G~~V~~~~r 39 (244)
T 1cyd_A 1 MKLNFSGLRALVTG-AG-K--GIGRDTVKALHASGAKVVAVTR 39 (244)
T ss_dssp --CCCTTCEEEEES-TT-S--HHHHHHHHHHHHTTCEEEEEES
T ss_pred CccCCCCCEEEEeC-CC-c--hHHHHHHHHHHHCCCEEEEEeC
Confidence 44444444554443 22 3 2346899999999999988753
No 162
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=35.39 E-value=1.8e+02 Score=23.52 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=25.8
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+.++++++..+.| --.+++++|+++|++|.++...
T Consensus 6 ~~k~vlITGas~g---IG~~~a~~l~~~G~~v~~~~~~ 40 (255)
T 3icc_A 6 KGKVALVTGASRG---IGRAIAKRLANDGALVAIHYGN 40 (255)
T ss_dssp TTCEEEETTCSSH---HHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCCCh---HHHHHHHHHHHCCCeEEEEeCC
Confidence 3466777766644 4578999999999999886543
No 163
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=35.33 E-value=44 Score=27.88 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=28.3
Q ss_pred HHHHhhhCCCCEEEecCCCc------cHHHHHHHhCCCeEEEecc
Q 041444 111 LEQLLRDHKPDCLVADIFFP------WATDAAAKFGIPRLVFHGT 149 (367)
Q Consensus 111 l~~~l~~~~~D~vi~D~~~~------~~~~~A~~lgiP~v~~~~~ 149 (367)
+.++++..+||+|++-.... -+..+|++||+|.+...+.
T Consensus 105 La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 149 (252)
T 1efp_B 105 LAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASK 149 (252)
T ss_dssp HHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCccccEEE
Confidence 33444445799999876542 3678999999999987654
No 164
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=35.23 E-value=75 Score=26.03 Aligned_cols=39 Identities=8% Similarity=-0.019 Sum_probs=25.3
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
|...++..++ +++..+ | .--.+++++|+++|++|+++.-
T Consensus 1 m~~~~~~k~v-lITGas-g--giG~~la~~l~~~G~~V~~~~r 39 (264)
T 2pd6_A 1 MQNRLRSALA-LVTGAG-S--GIGRAVSVRLAGEGATVAACDL 39 (264)
T ss_dssp CCCCCTTCEE-EEETTT-S--HHHHHHHHHHHHTTCEEEEEES
T ss_pred CccccCCCEE-EEECCC-C--hHHHHHHHHHHHCCCEEEEEeC
Confidence 5555544444 444333 2 2346899999999999988753
No 165
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=35.14 E-value=34 Score=25.45 Aligned_cols=35 Identities=9% Similarity=0.165 Sum_probs=27.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.+++++.... =+.|++.+++.|+++|.+|+++ ...
T Consensus 19 ~~~llIaGG~--GiaPl~sm~~~l~~~~~~v~l~-g~R 53 (142)
T 3lyu_A 19 GKILAIGAYT--GIVEVYPIAKAWQEIGNDVTTL-HVT 53 (142)
T ss_dssp SEEEEEEETT--HHHHHHHHHHHHHHTTCEEEEE-EEE
T ss_pred CeEEEEECcC--cHHHHHHHHHHHHhcCCcEEEE-EeC
Confidence 4566555333 4899999999999999999998 543
No 166
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=34.93 E-value=38 Score=29.20 Aligned_cols=34 Identities=9% Similarity=-0.001 Sum_probs=26.8
Q ss_pred cEEEEEcCCCc--ccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFMAH--GHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~--gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+|++++.+|- |. -+.+|+.|+++|++|+++...
T Consensus 133 ~~vlVlcG~GNNGGD---Glv~AR~L~~~G~~V~V~~~~ 168 (306)
T 3d3j_A 133 PTVALLCGPHVKGAQ---GISCGRHLANHDVQVILFLPN 168 (306)
T ss_dssp CEEEEEECSSHHHHH---HHHHHHHHHHTTCEEEEECCC
T ss_pred CeEEEEECCCCCHHH---HHHHHHHHHHCCCcEEEEEec
Confidence 58999997762 32 378899999999999988654
No 167
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=34.79 E-value=22 Score=30.83 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 23 PIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 23 p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
--.++|+++++||++||+++....
T Consensus 67 mG~aiAe~~~~~Ga~V~lv~g~~s 90 (313)
T 1p9o_A 67 RGATSAEAFLAAGYGVLFLYRARS 90 (313)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTS
T ss_pred HHHHHHHHHHHCCCEEEEEecCCC
Confidence 345789999999999999997643
No 168
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=34.28 E-value=61 Score=26.30 Aligned_cols=33 Identities=9% Similarity=-0.132 Sum_probs=22.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.+.++++..+. ---.+++++|+++|++|+++.-
T Consensus 7 ~k~vlVTGas~---gIG~~ia~~l~~~G~~V~~~~r 39 (241)
T 1dhr_A 7 ARRVLVYGGRG---ALGSRCVQAFRARNWWVASIDV 39 (241)
T ss_dssp CCEEEEETTTS---HHHHHHHHHHHTTTCEEEEEES
T ss_pred CCEEEEECCCc---HHHHHHHHHHHhCCCEEEEEeC
Confidence 34455554442 2457899999999999988753
No 169
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=34.27 E-value=40 Score=27.19 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=24.4
Q ss_pred CCCEEE-ecCCCc-cHHHHHHHhCCCeEEEecch
Q 041444 119 KPDCLV-ADIFFP-WATDAAAKFGIPRLVFHGTS 150 (367)
Q Consensus 119 ~~D~vi-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 150 (367)
.||+|| .|+-.- -+..-|.++|||+|.++-+.
T Consensus 115 ~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn 148 (208)
T 1vi6_A 115 EPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSN 148 (208)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTT
T ss_pred CCCEEEEECCCcchhHHHHHHHhCCCEEEEeCCC
Confidence 588765 787554 46778999999999987653
No 170
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=34.24 E-value=63 Score=23.16 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=22.4
Q ss_pred hhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 116 RDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 116 ~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
+..+||+||.|.... .+..+.+.+ ++|++.++...
T Consensus 45 ~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~~ 86 (137)
T 3cfy_A 45 ERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHG 86 (137)
T ss_dssp HHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESSC
T ss_pred HhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEecC
Confidence 345799999998664 355555443 46677665543
No 171
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=34.15 E-value=83 Score=21.90 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=24.6
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 150 (367)
+.+...+||+||.|.... .+..+.+.+ .+|++.++...
T Consensus 43 ~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~ 89 (128)
T 1jbe_A 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEA 89 (128)
T ss_dssp HHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSC
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCc
Confidence 344556899999998665 355555543 35777765543
No 172
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=34.13 E-value=61 Score=23.77 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=25.4
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecchh
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTSF 151 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~~ 151 (367)
+.++..+||+||.|.... .+..+.+.+ ++|+|+++....
T Consensus 41 ~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~ 86 (155)
T 1qkk_A 41 AGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGD 86 (155)
T ss_dssp HTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGG
T ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 444557899999997654 344444432 688888766543
No 173
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=33.95 E-value=71 Score=27.27 Aligned_cols=35 Identities=11% Similarity=0.036 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.+..+|++.-.. |.+ -.+|+++|+++||+|+.+.-
T Consensus 9 ~~~~~vlVTGat--G~i--G~~l~~~L~~~g~~V~~~~r 43 (342)
T 1y1p_A 9 PEGSLVLVTGAN--GFV--ASHVVEQLLEHGYKVRGTAR 43 (342)
T ss_dssp CTTCEEEEETTT--SHH--HHHHHHHHHHTTCEEEEEES
T ss_pred CCCCEEEEECCc--cHH--HHHHHHHHHHCCCEEEEEeC
Confidence 345566665432 333 36789999999999998763
No 174
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=33.86 E-value=84 Score=22.02 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=22.8
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh------CCCeEEEecc
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF------GIPRLVFHGT 149 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l------giP~v~~~~~ 149 (367)
+.+++.+||+||.|.... .+..+.+.+ ..|.|++.+.
T Consensus 44 ~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 44 IKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp HHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECC
T ss_pred HHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeC
Confidence 344567899999998765 355555543 2455555443
No 175
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=33.86 E-value=76 Score=26.15 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=24.2
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
|....+. +.++++..+ | .--.+++++|+++|++|+++.-
T Consensus 1 M~~~l~~-k~vlVTGas-~--gIG~~ia~~l~~~G~~V~~~~r 39 (260)
T 1nff_A 1 MSGRLTG-KVALVSGGA-R--GMGASHVRAMVAEGAKVVFGDI 39 (260)
T ss_dssp -CCTTTT-CEEEEETTT-S--HHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCCC-CEEEEeCCC-C--HHHHHHHHHHHHCCCEEEEEeC
Confidence 5433333 444555443 2 2346889999999999988753
No 176
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=33.70 E-value=99 Score=21.88 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=29.9
Q ss_pred CccEEEEEcCCCcccHHH-HHHHHHHHHhCCCeEEEEe
Q 041444 6 PQLHVFFFPFMAHGHMIP-IVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p-~l~La~~L~~rGh~Vt~~t 42 (367)
++.+|++++..|.|+-.- ...+-+.+.++|.++.+-+
T Consensus 20 ~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~ 57 (113)
T 1tvm_A 20 SKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQ 57 (113)
T ss_dssp SSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 456899999999999884 6777788888999875544
No 177
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=33.54 E-value=38 Score=24.63 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=26.3
Q ss_pred HHHHHhhh-CCCCEEEecCCCcc--HHHHHHHh-----CCCeEEEecch
Q 041444 110 PLEQLLRD-HKPDCLVADIFFPW--ATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 110 ~l~~~l~~-~~~D~vi~D~~~~~--~~~~A~~l-----giP~v~~~~~~ 150 (367)
.+..+.+. .+||+||.|..... +..+.+.+ ++|+|+++...
T Consensus 57 ~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~ 105 (146)
T 4dad_A 57 QIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDA 105 (146)
T ss_dssp HHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred HHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 44444455 78999999987653 44444432 57877776543
No 178
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=33.51 E-value=27 Score=30.13 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=34.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATR--GVKASVITTPAN 46 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~r--Gh~Vt~~t~~~~ 46 (367)
.||+++-..+.|.+.-..++.++|.++ +.+|++++....
T Consensus 1 ~~ILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~ 41 (326)
T 2gt1_A 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGF 41 (326)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHHHSTTCEEEEEEEGGG
T ss_pred CeEEEEeccccchHHhHHHHHHHHHHhCCCCEEEEEEehhh
Confidence 379999999999999999999999987 899999998744
No 179
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=33.41 E-value=63 Score=26.95 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=26.9
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
+.|+++++..+.| --.++|++|+++|++|.+..
T Consensus 10 ~GK~alVTGas~G---IG~aia~~la~~Ga~V~~~~ 42 (261)
T 4h15_A 10 RGKRALITAGTKG---AGAATVSLFLELGAQVLTTA 42 (261)
T ss_dssp TTCEEEESCCSSH---HHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEeccCcH---HHHHHHHHHHHcCCEEEEEE
Confidence 5688999887764 45789999999999998764
No 180
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=33.37 E-value=51 Score=27.57 Aligned_cols=32 Identities=9% Similarity=-0.069 Sum_probs=24.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
.++++++..+.| --.+++++|+++|++|.++.
T Consensus 30 ~k~vlVTGas~G---IG~aia~~l~~~G~~Vi~~~ 61 (281)
T 3ppi_A 30 GASAIVSGGAGG---LGEATVRRLHADGLGVVIAD 61 (281)
T ss_dssp TEEEEEETTTSH---HHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCCh---HHHHHHHHHHHCCCEEEEEe
Confidence 467777766644 45789999999999988765
No 181
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=33.30 E-value=96 Score=21.98 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=21.8
Q ss_pred CCCCEEEecCCCc--cHHHHHHHh------CCCeEEEecch
Q 041444 118 HKPDCLVADIFFP--WATDAAAKF------GIPRLVFHGTS 150 (367)
Q Consensus 118 ~~~D~vi~D~~~~--~~~~~A~~l------giP~v~~~~~~ 150 (367)
.+||+||.|..++ .+..+++.+ .+|+|.++...
T Consensus 51 ~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~ 91 (133)
T 2r25_B 51 ENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFA 91 (133)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCC
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCC
Confidence 5799999998765 355544432 45777766553
No 182
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=33.17 E-value=70 Score=29.20 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=35.6
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
+..|+++..+|.|=..-...||..|+++|++|.++..+...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 44577888899999999999999999999999999977553
No 183
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=33.15 E-value=58 Score=23.81 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=25.0
Q ss_pred HHHHhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 111 LEQLLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 111 l~~~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
..+.+++.+||+||.|.... .+..+.+.+ ++|+|+++...
T Consensus 53 a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 99 (152)
T 3eul_A 53 ALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHD 99 (152)
T ss_dssp HHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccC
Confidence 33455567899999998664 355554433 46777765543
No 184
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=33.11 E-value=74 Score=26.97 Aligned_cols=39 Identities=8% Similarity=0.070 Sum_probs=24.6
Q ss_pred CCccEEE-EEcCCCcccHHH--HHHHHHHHHhCCCeEEEEeC
Q 041444 5 IPQLHVF-FFPFMAHGHMIP--IVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 5 ~~~~~vl-~~p~p~~gH~~p--~l~La~~L~~rGh~Vt~~t~ 43 (367)
++++||+ |+..|-..-++- ...+.+.|.++||+|+++--
T Consensus 20 m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DL 61 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDL 61 (280)
T ss_dssp --CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred hhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 3455666 555665544433 34567888899999998754
No 185
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=33.09 E-value=93 Score=21.79 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=30.1
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
++.+|++++..|.|--.-...+-+.+.++|.++.+-..
T Consensus 2 ~mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~ 39 (106)
T 1e2b_A 2 EKKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAF 39 (106)
T ss_dssp CCEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred CCcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 35689999999887777777888888899998876543
No 186
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2
Probab=33.05 E-value=80 Score=26.02 Aligned_cols=32 Identities=16% Similarity=0.046 Sum_probs=22.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
++++++..+ | .--.+++++|+++|++|+++.-
T Consensus 8 k~vlVTGas-~--gIG~~ia~~l~~~G~~V~~~~r 39 (267)
T 2gdz_A 8 KVALVTGAA-Q--GIGRAFAEALLLKGAKVALVDW 39 (267)
T ss_dssp CEEEEETTT-S--HHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCC-C--cHHHHHHHHHHHCCCEEEEEEC
Confidence 445555443 2 2356899999999999988753
No 187
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=33.03 E-value=91 Score=22.27 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=21.4
Q ss_pred CCCCEEEecCCCc---cHHHHHHH----hCCCeEEEecc
Q 041444 118 HKPDCLVADIFFP---WATDAAAK----FGIPRLVFHGT 149 (367)
Q Consensus 118 ~~~D~vi~D~~~~---~~~~~A~~----lgiP~v~~~~~ 149 (367)
.+||+||.|.... .+..+.+. -++|+|+++..
T Consensus 49 ~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~ 87 (140)
T 3h5i_A 49 WYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAH 87 (140)
T ss_dssp CCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESS
T ss_pred CCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECC
Confidence 6899999997653 35544443 36788776544
No 188
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=32.90 E-value=63 Score=23.05 Aligned_cols=37 Identities=11% Similarity=-0.069 Sum_probs=24.8
Q ss_pred HHHHhhh-CCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEe
Q 041444 111 LEQLLRD-HKPDCLVADIFFP--WATDAAAKF-----GIPRLVFH 147 (367)
Q Consensus 111 l~~~l~~-~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~ 147 (367)
..+.++. .++|+||.|.... .+..+.+.+ ++|+|+++
T Consensus 51 al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 51 FFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 3345566 7899999998665 456666654 46666654
No 189
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=32.78 E-value=31 Score=29.36 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=24.3
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.+|+|+-.+..| ..+|..|+++||+|+++..
T Consensus 3 ~m~i~iiG~G~~G-----~~~a~~l~~~g~~V~~~~r 34 (316)
T 2ew2_A 3 AMKIAIAGAGAMG-----SRLGIMLHQGGNDVTLIDQ 34 (316)
T ss_dssp -CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred CCeEEEECcCHHH-----HHHHHHHHhCCCcEEEEEC
Confidence 3578888765544 4678999999999999864
No 190
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=32.73 E-value=32 Score=29.18 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=25.1
Q ss_pred HHhhhCCCCEEEecCCCc-c--HHHHHHH----hCCCeEEEecc
Q 041444 113 QLLRDHKPDCLVADIFFP-W--ATDAAAK----FGIPRLVFHGT 149 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~-~--~~~~A~~----lgiP~v~~~~~ 149 (367)
+.++..+||+||.|..++ . |..+++. .++|+|.++..
T Consensus 199 ~~~~~~~~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI~lT~~ 242 (286)
T 3n0r_A 199 EAVTRRTPGLVLADIQLADGSSGIDAVKDILGRMDVPVIFITAF 242 (286)
T ss_dssp HHHHHCCCSEEEEESCCTTSCCTTTTTHHHHHHTTCCEEEEESC
T ss_pred HHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEEEEeCC
Confidence 344567899999998776 2 4333322 27999988765
No 191
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=32.70 E-value=79 Score=22.63 Aligned_cols=34 Identities=15% Similarity=0.329 Sum_probs=22.4
Q ss_pred hCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 117 DHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 117 ~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
..+||+||.|.... .+..+.+.+ ++|+|+++...
T Consensus 47 ~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 87 (143)
T 3jte_A 47 CNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHG 87 (143)
T ss_dssp TTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTT
T ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCC
Confidence 46899999998664 355544433 47777776544
No 192
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=32.65 E-value=71 Score=26.38 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=26.6
Q ss_pred ccEEEEEcCCCc----------ccH-HHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAH----------GHM-IPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~----------gH~-~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+.||+++-.... |-. .=+..-...|.+.|++|+++++.
T Consensus 3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~ 51 (244)
T 3kkl_A 3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSET 51 (244)
T ss_dssp CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457887766532 222 34666778888999999999975
No 193
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=32.26 E-value=1e+02 Score=23.94 Aligned_cols=40 Identities=8% Similarity=0.070 Sum_probs=30.3
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+++.+|+++.+++.. ..-+......|.+.|++|++++...
T Consensus 7 ~~~~~v~il~~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~~ 46 (190)
T 2vrn_A 7 LTGKKIAILAADGVE-EIELTSPRAAIEAAGGTTELISLEP 46 (190)
T ss_dssp CTTCEEEEECCTTCB-HHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCCEEEEEeCCCCC-HHHHHHHHHHHHHCCCEEEEEecCC
Confidence 346789999888754 4455666777888999999998764
No 194
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=32.25 E-value=84 Score=25.00 Aligned_cols=37 Identities=5% Similarity=0.055 Sum_probs=28.9
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+.||+++-+++.. ..-+......|.+.|++|++++..
T Consensus 9 ~~~v~ill~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~ 45 (208)
T 3ot1_A 9 SKRILVPVAHGSE-EMETVIIVDTLVRAGFQVTMAAVG 45 (208)
T ss_dssp CCEEEEEECTTCC-HHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCeEEEEECCCCc-HHHHHHHHHHHHHCCCEEEEEEcC
Confidence 5689988888754 455556667888899999999985
No 195
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=32.15 E-value=59 Score=25.42 Aligned_cols=38 Identities=24% Similarity=0.473 Sum_probs=25.3
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
+.++..+||+||.|...+ .+..+++.+ ++|+|+++...
T Consensus 42 ~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~ 86 (208)
T 1yio_A 42 EHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHG 86 (208)
T ss_dssp HHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESCT
T ss_pred HhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 344556899999998765 355555443 57888876543
No 196
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=32.02 E-value=66 Score=23.80 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=23.4
Q ss_pred EEcCCCcccHHH--HHHHHHHHHhCCCeEEEEeCCC
Q 041444 12 FFPFMAHGHMIP--IVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 12 ~~p~p~~gH~~p--~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
++..+-+|+... -+.++..++..||+|+++-...
T Consensus 11 vv~~~P~g~~~~~~al~~a~a~~a~~~~v~Vff~~D 46 (136)
T 2hy5_B 11 LNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLDD 46 (136)
T ss_dssp EECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEECGG
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEEhH
Confidence 334444565444 5677888899999998877653
No 197
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=31.98 E-value=80 Score=24.93 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=25.7
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecchh
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTSF 151 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~~ 151 (367)
+.+...+||+||.|...+ .+..+.+.+ ++|+|+++....
T Consensus 40 ~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~ 85 (225)
T 1kgs_A 40 YMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSD 85 (225)
T ss_dssp HHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCH
T ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 344557899999998664 355554433 578888766543
No 198
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=31.93 E-value=45 Score=30.63 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=22.0
Q ss_pred HHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEE
Q 041444 111 LEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLV 145 (367)
Q Consensus 111 l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~ 145 (367)
+++++++.++|++|... ....+|+++|+|++.
T Consensus 367 le~~i~~~~pDllig~~---~~~~~a~k~gip~~~ 398 (458)
T 3pdi_B 367 LEHAARAGQAQLVIGNS---HALASARRLGVPLLR 398 (458)
T ss_dssp HHHHHHHHTCSEEEECT---THHHHHHHTTCCEEE
T ss_pred HHHHHHhcCCCEEEECh---hHHHHHHHcCCCEEE
Confidence 45555566788888764 345678888888776
No 199
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=31.75 E-value=58 Score=26.95 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=25.2
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.++++++..+.| --.++|++|+++|++|.++.-
T Consensus 7 ~~k~~lVTGas~G---IG~aia~~l~~~G~~V~~~~r 40 (265)
T 3lf2_A 7 SEAVAVVTGGSSG---IGLATVELLLEAGAAVAFCAR 40 (265)
T ss_dssp TTCEEEEETCSSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEeCCCCh---HHHHHHHHHHHCCCEEEEEeC
Confidence 4566777766543 457899999999999887653
No 200
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=31.75 E-value=31 Score=29.45 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=26.5
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+.+|+|+-....|. .+++.|+++||+|+++...
T Consensus 15 ~~~I~vIG~G~mG~-----~~A~~l~~~G~~V~~~dr~ 47 (296)
T 3qha_A 15 QLKLGYIGLGNMGA-----PMATRMTEWPGGVTVYDIR 47 (296)
T ss_dssp CCCEEEECCSTTHH-----HHHHHHTTSTTCEEEECSS
T ss_pred CCeEEEECcCHHHH-----HHHHHHHHCCCeEEEEeCC
Confidence 45899997776664 6789999999999988644
No 201
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=31.69 E-value=45 Score=27.76 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=24.5
Q ss_pred CCCEEE-ecCCCc-cHHHHHHHhCCCeEEEecch
Q 041444 119 KPDCLV-ADIFFP-WATDAAAKFGIPRLVFHGTS 150 (367)
Q Consensus 119 ~~D~vi-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 150 (367)
.||+|| .|...- -+..-|.++|||+|.++-+.
T Consensus 151 ~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn 184 (253)
T 3bch_A 151 EPRLLVVTDPRADHQPLTEASYVNLPTIALCNTD 184 (253)
T ss_dssp SCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTT
T ss_pred CCCEEEEECCCccchHHHHHHHhCCCEEEEEcCC
Confidence 588765 787554 46778999999999987654
No 202
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=31.66 E-value=34 Score=29.86 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
++.+|+++-.+..| ..+|..|+++||+|+++..
T Consensus 3 ~~mki~iiG~G~~G-----~~~a~~L~~~g~~V~~~~r 35 (359)
T 1bg6_A 3 ESKTYAVLGLGNGG-----HAFAAYLALKGQSVLAWDI 35 (359)
T ss_dssp -CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred CcCeEEEECCCHHH-----HHHHHHHHhCCCEEEEEeC
Confidence 34689999765544 3578889999999998854
No 203
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=31.60 E-value=80 Score=25.78 Aligned_cols=38 Identities=21% Similarity=0.441 Sum_probs=26.0
Q ss_pred HHhhhCCCCEEEecCCCcc--HHHHHHHh----CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFPW--ATDAAAKF----GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~~--~~~~A~~l----giP~v~~~~~~ 150 (367)
+.+...+||+||.|...+. +..+++.+ ++|+|+++...
T Consensus 75 ~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 75 IKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARD 118 (249)
T ss_dssp HHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCC
Confidence 4455678999999987763 45555543 57888776554
No 204
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=31.52 E-value=63 Score=30.17 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=29.9
Q ss_pred CccEEEEEcCCCccc--HHHHHHHHHH--HHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGH--MIPIVDMAKL--FATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH--~~p~l~La~~--L~~rGh~Vt~~t~~ 44 (367)
.+.||+++.....+| -.-+..|++. |.++||+|++++..
T Consensus 204 ~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~ 246 (568)
T 2vsy_A 204 GPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATS 246 (568)
T ss_dssp SCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred CCeEEEEECcccccChHHHHHHHHHhhccCCcccEEEEEEECC
Confidence 467899887665444 4567889999 67789999999864
No 205
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=31.51 E-value=56 Score=25.87 Aligned_cols=35 Identities=14% Similarity=-0.029 Sum_probs=25.6
Q ss_pred ccEEEEEcCCC---cccHHHHHHHHHHHHhCCCeEEEE
Q 041444 7 QLHVFFFPFMA---HGHMIPIVDMAKLFATRGVKASVI 41 (367)
Q Consensus 7 ~~~vl~~p~p~---~gH~~p~l~La~~L~~rGh~Vt~~ 41 (367)
+.+|.++.... .-+..-...|+++|+++|+.|.+-
T Consensus 13 ~~~I~Vfg~s~~~~~~~~~~A~~lg~~la~~g~~lv~G 50 (189)
T 3sbx_A 13 RWTVAVYCAAAPTHPELLELAGAVGAAIAARGWTLVWG 50 (189)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CeEEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEC
Confidence 57899998765 123455788889999999986554
No 206
>3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp}
Probab=31.50 E-value=82 Score=24.82 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=27.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
..++++-.+..|+-.-+..+++.|+++|+.|..+-.
T Consensus 32 ~p~vv~~HG~~g~~~~~~~~~~~l~~~G~~v~~~d~ 67 (241)
T 3f67_A 32 LPIVIVVQEIFGVHEHIRDLCRRLAQEGYLAIAPEL 67 (241)
T ss_dssp EEEEEEECCTTCSCHHHHHHHHHHHHTTCEEEEECT
T ss_pred CCEEEEEcCcCccCHHHHHHHHHHHHCCcEEEEecc
Confidence 345555555667778899999999999999877654
No 207
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=31.47 E-value=35 Score=29.65 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=26.5
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+||+|+-.+..| ..++..|++.||+|+++...
T Consensus 14 ~~kI~iIG~G~mG-----~ala~~L~~~G~~V~~~~r~ 46 (335)
T 1z82_A 14 EMRFFVLGAGSWG-----TVFAQMLHENGEEVILWARR 46 (335)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSS
T ss_pred CCcEEEECcCHHH-----HHHHHHHHhCCCeEEEEeCC
Confidence 5789988776655 57899999999999988643
No 208
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=31.41 E-value=47 Score=28.35 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=25.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
.||.|+-..-.|. ++|+.|+++||+|+++.
T Consensus 6 ~kIgfIGLG~MG~-----~mA~~L~~~G~~V~v~d 35 (297)
T 4gbj_A 6 EKIAFLGLGNLGT-----PIAEILLEAGYELVVWN 35 (297)
T ss_dssp CEEEEECCSTTHH-----HHHHHHHHTTCEEEEC-
T ss_pred CcEEEEecHHHHH-----HHHHHHHHCCCeEEEEe
Confidence 4799998888774 68999999999999875
No 209
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=31.41 E-value=1e+02 Score=21.94 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=17.3
Q ss_pred HhhhCCCCEEEecCCCc--cHHHHHHHh
Q 041444 114 LLRDHKPDCLVADIFFP--WATDAAAKF 139 (367)
Q Consensus 114 ~l~~~~~D~vi~D~~~~--~~~~~A~~l 139 (367)
.++..+||+||.|.... .+..+.+.+
T Consensus 49 ~l~~~~~dlvllD~~lp~~~g~~~~~~l 76 (140)
T 3c97_A 49 AYQNRQFDVIIMDIQMPVMDGLEAVSEI 76 (140)
T ss_dssp HHHHSCCSEEEECTTCCSSCHHHHHHHH
T ss_pred HHhcCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 34456899999998664 355555443
No 210
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=31.39 E-value=2.4e+02 Score=30.79 Aligned_cols=42 Identities=10% Similarity=0.019 Sum_probs=36.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcch
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPY 49 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~ 49 (367)
.-+++...|+.|=..-.++++...+++|..|.|++.+...+.
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~ 425 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 425 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHH
Confidence 347788899999999999999999999999999998865443
No 211
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=31.20 E-value=61 Score=27.27 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=27.5
Q ss_pred CCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 15 FMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 15 ~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
-+|.|=..-...||..|+++|++|.++=.+.
T Consensus 13 KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 13 KGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp SSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4678999999999999999999999887665
No 212
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=31.13 E-value=36 Score=23.68 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCC-CeEEEEeC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRG-VKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rG-h~Vt~~t~ 43 (367)
..+|+++-. |-+ -..+++.|.++| ++|+++.-
T Consensus 5 ~~~v~I~G~---G~i--G~~~~~~l~~~g~~~v~~~~r 37 (118)
T 3ic5_A 5 RWNICVVGA---GKI--GQMIAALLKTSSNYSVTVADH 37 (118)
T ss_dssp CEEEEEECC---SHH--HHHHHHHHHHCSSEEEEEEES
T ss_pred cCeEEEECC---CHH--HHHHHHHHHhCCCceEEEEeC
Confidence 457887755 322 356889999999 99988764
No 213
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=30.94 E-value=87 Score=25.52 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=24.4
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
|....+. ++++++..+ | .--.+++++|+++|++|+++.-
T Consensus 1 M~~~l~~-k~vlVTGas-~--gIG~~ia~~l~~~G~~V~~~~r 39 (249)
T 2ew8_A 1 MTQRLKD-KLAVITGGA-N--GIGRAIAERFAVEGADIAIADL 39 (249)
T ss_dssp --CTTTT-CEEEEETTT-S--HHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCCC-CEEEEeCCC-c--HHHHHHHHHHHHCCCEEEEEcC
Confidence 5444433 445555444 2 2457899999999999988754
No 214
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=30.88 E-value=60 Score=26.82 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=31.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.|+|..-+|.|=..-...||..|+++|++|.++=.+.
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 4666667788999999999999999999999876554
No 215
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=30.69 E-value=70 Score=26.17 Aligned_cols=34 Identities=26% Similarity=0.208 Sum_probs=24.9
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.++++++..+.| --.++|++|+++|++|.++.-
T Consensus 8 ~gk~~lVTGas~g---IG~a~a~~l~~~G~~V~~~~r 41 (248)
T 3op4_A 8 EGKVALVTGASRG---IGKAIAELLAERGAKVIGTAT 41 (248)
T ss_dssp TTCEEEESSCSSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEeCCCCH---HHHHHHHHHHHCCCEEEEEeC
Confidence 3467777766532 357899999999999987653
No 216
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=30.66 E-value=82 Score=21.26 Aligned_cols=37 Identities=16% Similarity=0.060 Sum_probs=23.0
Q ss_pred HhhhCCCCEEEecCCCc--cHHHHHHH-------hCCCeEEEecch
Q 041444 114 LLRDHKPDCLVADIFFP--WATDAAAK-------FGIPRLVFHGTS 150 (367)
Q Consensus 114 ~l~~~~~D~vi~D~~~~--~~~~~A~~-------lgiP~v~~~~~~ 150 (367)
.++..+||+||.|.... .+..+.+. -++|+|.++...
T Consensus 40 ~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~ 85 (119)
T 2j48_A 40 QLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEP 85 (119)
T ss_dssp HHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSC
T ss_pred HHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCC
Confidence 34445799999997654 34444333 357888776543
No 217
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=30.55 E-value=71 Score=24.42 Aligned_cols=45 Identities=13% Similarity=0.270 Sum_probs=31.0
Q ss_pred hhHHHHHHHhhhCCCCEEEecCCCc-c------------H--HHHHHHhCCCeEEEecch
Q 041444 106 KLQEPLEQLLRDHKPDCLVADIFFP-W------------A--TDAAAKFGIPRLVFHGTS 150 (367)
Q Consensus 106 ~~~~~l~~~l~~~~~D~vi~D~~~~-~------------~--~~~A~~lgiP~v~~~~~~ 150 (367)
.+...+.+++++.+||.+..|..+. - + ..++...|+|+..+.+.-
T Consensus 46 ~i~~~l~~~i~~~~Pd~vaiE~vf~~~n~~s~~~lgqarGv~~~a~~~~~ipv~eytp~~ 105 (158)
T 1hjr_A 46 LIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQ 105 (158)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeecccccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 3456677888888999999885331 1 1 345667889988876653
No 218
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=30.36 E-value=64 Score=24.99 Aligned_cols=36 Identities=11% Similarity=-0.017 Sum_probs=26.8
Q ss_pred cEEEEEcCCCcc----cHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAHG----HMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~g----H~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
..|.++.....+ +..-...|+++|+++|+.|..--.
T Consensus 2 ~~V~V~gs~~~~~~~~~~~~A~~lg~~La~~g~~lV~Ggg 41 (171)
T 1weh_A 2 RLLAVFVSSRLSPEDPLYARWVRYGEVLAEEGFGLACGGY 41 (171)
T ss_dssp EEEEEECCSSCCTTSHHHHHHHHHHHHHHHTTEEEEECCS
T ss_pred CEEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEeCCh
Confidence 358888876654 567889999999999977665444
No 219
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=30.33 E-value=76 Score=23.40 Aligned_cols=40 Identities=10% Similarity=0.136 Sum_probs=25.3
Q ss_pred HHHHhhhC--CCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 111 LEQLLRDH--KPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 111 l~~~l~~~--~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
..+.+++. +||+||.|.... .+..+.+.+ ++|+|+++...
T Consensus 73 al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~ 121 (157)
T 3hzh_A 73 AVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALG 121 (157)
T ss_dssp HHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccC
Confidence 33444555 799999998664 355554433 57887776553
No 220
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=30.32 E-value=54 Score=23.51 Aligned_cols=36 Identities=17% Similarity=0.355 Sum_probs=20.8
Q ss_pred HhhhCCCCEEEecCCCcc--HHHHHHH-------hCCCeEEEecc
Q 041444 114 LLRDHKPDCLVADIFFPW--ATDAAAK-------FGIPRLVFHGT 149 (367)
Q Consensus 114 ~l~~~~~D~vi~D~~~~~--~~~~A~~-------lgiP~v~~~~~ 149 (367)
.+++.+||+||.|..... +..+.+. -++|+|+++..
T Consensus 41 ~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 41 QIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp HHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred HHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecC
Confidence 344568999999986642 3333332 35677776554
No 221
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=30.14 E-value=23 Score=29.69 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=25.5
Q ss_pred CCCCEEE-ecCCCc-cHHHHHHHhCCCeEEEecchh
Q 041444 118 HKPDCLV-ADIFFP-WATDAAAKFGIPRLVFHGTSF 151 (367)
Q Consensus 118 ~~~D~vi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 151 (367)
.-||+|| .|+..- -+..-|.++|||+|.++-+..
T Consensus 157 ~~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivDTn~ 192 (256)
T 2vqe_B 157 RLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDS 192 (256)
T ss_dssp SCCSEEEESCTTTTHHHHHHHHHTTCCCEECCCTTS
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 3688765 787554 467789999999999866543
No 222
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=30.10 E-value=80 Score=25.64 Aligned_cols=34 Identities=9% Similarity=0.169 Sum_probs=27.1
Q ss_pred EEEEEc-CCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 9 HVFFFP-FMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 9 ~vl~~p-~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
.|.+.. .++.|=......|++.|+++|++|.++=
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 344333 3567999999999999999999999864
No 223
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=30.05 E-value=70 Score=27.14 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=32.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
..|+|..-+|.|=..-...||..|+++|++|.++=.+.
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35666677788999999999999999999999887664
No 224
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=30.04 E-value=39 Score=27.66 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCC
Q 041444 23 PIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 23 p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
--.++|++|+++|++|+++...
T Consensus 36 iG~aiA~~~~~~Ga~V~l~~~~ 57 (226)
T 1u7z_A 36 MGFAIAAAAARRGANVTLVSGP 57 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEECS
T ss_pred HHHHHHHHHHHCCCEEEEEECC
Confidence 4568899999999999998654
No 225
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=30.04 E-value=63 Score=26.88 Aligned_cols=34 Identities=18% Similarity=0.075 Sum_probs=25.0
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.++++++..+.| --.++|++|+++|++|.++..
T Consensus 27 ~~k~vlVTGas~g---IG~aia~~la~~G~~V~~~~~ 60 (269)
T 4dmm_A 27 TDRIALVTGASRG---IGRAIALELAAAGAKVAVNYA 60 (269)
T ss_dssp TTCEEEETTCSSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEECCCCH---HHHHHHHHHHHCCCEEEEEeC
Confidence 3467777766532 457899999999999987654
No 226
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=30.01 E-value=91 Score=24.78 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=24.2
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecc
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGT 149 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~ 149 (367)
+.+...+||+||.|.... .+..+++.+ ++|+++++..
T Consensus 45 ~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~ 88 (233)
T 1ys7_A 45 RSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSAR 88 (233)
T ss_dssp HHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEcC
Confidence 344557899999998665 355554433 5788776544
No 227
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=29.95 E-value=69 Score=25.50 Aligned_cols=32 Identities=9% Similarity=0.087 Sum_probs=27.0
Q ss_pred EEEEc-CCCcccHHHHHHHHHHHHhCCCeEEEE
Q 041444 10 VFFFP-FMAHGHMIPIVDMAKLFATRGVKASVI 41 (367)
Q Consensus 10 vl~~p-~p~~gH~~p~l~La~~L~~rGh~Vt~~ 41 (367)
|++.. -++.|=..-...||..|+++|++|.++
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 44444 367899999999999999999999886
No 228
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=29.84 E-value=74 Score=25.89 Aligned_cols=39 Identities=18% Similarity=0.406 Sum_probs=26.2
Q ss_pred HHHhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 112 EQLLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 112 ~~~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
.+.++..+||+||.|...+ .+..+++.+ ++|+++++...
T Consensus 60 l~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~ 105 (250)
T 3r0j_A 60 LDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARD 105 (250)
T ss_dssp HHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECST
T ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCC
Confidence 3445556899999998765 355555543 47888876654
No 229
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=29.83 E-value=73 Score=26.66 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=30.6
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANA 47 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~ 47 (367)
++++||++.--=|. |---+..|+++|.+ +|+|+++.+....
T Consensus 9 ~~~m~ILlTNDDGi-~apGi~aL~~~l~~-~~~V~VVAP~~~~ 49 (261)
T 3ty2_A 9 TPKLRLLLSNDDGV-YAKGLAILAKTLAD-LGEVDVVAPDRNR 49 (261)
T ss_dssp --CCEEEEECSSCT-TCHHHHHHHHHHTT-TSEEEEEEESSCC
T ss_pred CCCCeEEEEcCCCC-CCHHHHHHHHHHHh-cCCEEEEecCCCC
Confidence 34578988876664 44558888899887 8999999988654
No 230
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=29.74 E-value=32 Score=29.89 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=25.3
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
..+|+|+-.++.| ..+|..|+++||+|+++.-
T Consensus 3 ~mkI~IiGaG~~G-----~~~a~~L~~~g~~V~~~~r 34 (335)
T 3ghy_A 3 LTRICIVGAGAVG-----GYLGARLALAGEAINVLAR 34 (335)
T ss_dssp CCCEEEESCCHHH-----HHHHHHHHHTTCCEEEECC
T ss_pred CCEEEEECcCHHH-----HHHHHHHHHCCCEEEEEEC
Confidence 4578888666555 4678999999999999874
No 231
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=29.73 E-value=1.1e+02 Score=22.11 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=22.4
Q ss_pred CCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecch
Q 041444 118 HKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGTS 150 (367)
Q Consensus 118 ~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 150 (367)
.+||+||.|.... .+..+.+.+ ++|+|+++...
T Consensus 60 ~~~dlillD~~lp~~~g~~l~~~l~~~~~~~~~piiils~~~ 101 (149)
T 1i3c_A 60 PRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSH 101 (149)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCC
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEECCC
Confidence 4799999998764 355554443 46888876654
No 232
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=29.70 E-value=35 Score=28.01 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=24.1
Q ss_pred CCCEEE-ecCCCc-cHHHHHHHhCCCeEEEecch
Q 041444 119 KPDCLV-ADIFFP-WATDAAAKFGIPRLVFHGTS 150 (367)
Q Consensus 119 ~~D~vi-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 150 (367)
-||+|+ .|+..- -+..-|.++|||+|.++-+.
T Consensus 157 ~Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDTn 190 (231)
T 3bbn_B 157 LPDIVIIVDQQEEYTALRECITLGIPTICLIDTN 190 (231)
T ss_dssp CCSEEEESCTTTTHHHHHHHHTTTCCEEECCCSS
T ss_pred CCCEEEEeCCccccHHHHHHHHhCCCEEEEecCC
Confidence 488866 777554 46778999999999976553
No 233
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=29.59 E-value=67 Score=22.98 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=23.5
Q ss_pred HhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 114 LLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 114 ~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
.+...+||+||.|.... .+..+.+.+ ++|+|.++...
T Consensus 39 ~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~~~ 82 (139)
T 2jk1_A 39 ILEEEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGYT 82 (139)
T ss_dssp HHHHSCEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEESCT
T ss_pred HHhcCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 44456799999998664 355554433 46777765543
No 234
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=29.43 E-value=38 Score=29.20 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEE
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVI 41 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~ 41 (367)
.+.+|+|+-.++.| ..+|..|++.||+|+++
T Consensus 18 ~~~kI~IiGaGa~G-----~~~a~~L~~~G~~V~l~ 48 (318)
T 3hwr_A 18 QGMKVAIMGAGAVG-----CYYGGMLARAGHEVILI 48 (318)
T ss_dssp --CEEEEESCSHHH-----HHHHHHHHHTTCEEEEE
T ss_pred cCCcEEEECcCHHH-----HHHHHHHHHCCCeEEEE
Confidence 46789999776665 56788999999999998
No 235
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=29.36 E-value=1.1e+02 Score=21.91 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=18.8
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF 139 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l 139 (367)
+.++..+||+||.|.... .+..+++.+
T Consensus 49 ~~l~~~~~dlvi~d~~l~~~~g~~~~~~l 77 (143)
T 2qv0_A 49 KFLQHNKVDAIFLDINIPSLDGVLLAQNI 77 (143)
T ss_dssp HHHHHCCCSEEEECSSCSSSCHHHHHHHH
T ss_pred HHHHhCCCCEEEEecCCCCCCHHHHHHHH
Confidence 344557899999998664 466666665
No 236
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=29.33 E-value=84 Score=21.67 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=21.5
Q ss_pred HhhhCCCCEEEecCCCc---cHHHHHHH-------hCCCeEEE
Q 041444 114 LLRDHKPDCLVADIFFP---WATDAAAK-------FGIPRLVF 146 (367)
Q Consensus 114 ~l~~~~~D~vi~D~~~~---~~~~~A~~-------lgiP~v~~ 146 (367)
.++..+||+||.|.... .+..+.+. -++|++.+
T Consensus 44 ~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 44 QIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred HHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE
Confidence 44456799999998654 34444433 25788877
No 237
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=29.27 E-value=57 Score=27.51 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=25.0
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.++++++..+.| --.++|++|+++|++|.++.-
T Consensus 11 ~~k~vlITGas~G---IG~~~a~~L~~~G~~V~~~~r 44 (311)
T 3o26_A 11 KRRCAVVTGGNKG---IGFEICKQLSSNGIMVVLTCR 44 (311)
T ss_dssp -CCEEEESSCSSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CCcEEEEecCCch---HHHHHHHHHHHCCCEEEEEeC
Confidence 4467777766643 456899999999999887753
No 238
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Probab=29.23 E-value=70 Score=27.53 Aligned_cols=38 Identities=24% Similarity=0.072 Sum_probs=25.4
Q ss_pred CCCCCC-ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEE
Q 041444 1 MGSKIP-QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVI 41 (367)
Q Consensus 1 m~~~~~-~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~ 41 (367)
|.+.+. +.++++++..+. ---.+++++|+++|++|++.
T Consensus 1 M~~~~~l~gk~~lVTGas~---GIG~~~a~~La~~Ga~Vv~~ 39 (319)
T 1gz6_A 1 MASPLRFDGRVVLVTGAGG---GLGRAYALAFAERGALVVVN 39 (319)
T ss_dssp --CCCCCTTCEEEETTTTS---HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCCCCCEEEEeCCCc---HHHHHHHHHHHHCCCEEEEE
Confidence 544432 346677776553 24568899999999999886
No 239
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=29.22 E-value=96 Score=25.51 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=24.3
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
|....+. ++++++..+. .--.+++++|+++|++|+++.-
T Consensus 1 m~~~l~~-k~vlVTGas~---gIG~~ia~~l~~~G~~V~~~~r 39 (262)
T 1zem_A 1 MSKKFNG-KVCLVTGAGG---NIGLATALRLAEEGTAIALLDM 39 (262)
T ss_dssp --CTTTT-CEEEEETTTS---HHHHHHHHHHHHTTCEEEEEES
T ss_pred CCcccCC-CEEEEeCCCc---HHHHHHHHHHHHCCCEEEEEeC
Confidence 4443433 4455554443 2356899999999999988753
No 240
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=29.15 E-value=46 Score=27.49 Aligned_cols=39 Identities=10% Similarity=0.150 Sum_probs=31.0
Q ss_pred cEEEEE-cCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 8 LHVFFF-PFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 8 ~~vl~~-p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
..|+|. +-+|.|=..-...||..|+++|++|.++=.+..
T Consensus 7 ~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 345554 456678999999999999999999999876653
No 241
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}
Probab=29.08 E-value=83 Score=26.88 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=23.1
Q ss_pred cEEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 8 LHVFFFPFM--AHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 8 ~~vl~~p~p--~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
.++++++.. +.| --.++|++|+++|++|.++.
T Consensus 9 ~k~~lVTGa~~s~G---IG~aia~~la~~G~~Vv~~~ 42 (319)
T 2ptg_A 9 GKTAFVAGVADSNG---YGWAICKLLRAAGARVLVGT 42 (319)
T ss_dssp TCEEEEECCCCTTS---HHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCCCCCc---HHHHHHHHHHHCCCEEEEEe
Confidence 456666655 333 34789999999999998864
No 242
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=28.88 E-value=1e+02 Score=25.11 Aligned_cols=39 Identities=15% Similarity=0.096 Sum_probs=24.4
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
|.+..+. ++++++..+. .--.+++++|+++|++|.++.-
T Consensus 1 m~~~l~~-k~~lVTGas~---gIG~aia~~l~~~G~~V~~~~r 39 (247)
T 2jah_A 1 MPSALQG-KVALITGASS---GIGEATARALAAEGAAVAIAAR 39 (247)
T ss_dssp --CTTTT-CEEEEESCSS---HHHHHHHHHHHHTTCEEEEEES
T ss_pred CCccCCC-CEEEEECCCC---HHHHHHHHHHHHCCCEEEEEEC
Confidence 5444433 4455554442 3457899999999999988753
No 243
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=28.81 E-value=63 Score=26.21 Aligned_cols=36 Identities=14% Similarity=0.016 Sum_probs=28.3
Q ss_pred cEEEEEcCCCcc----cHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAHG----HMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~g----H~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
..|+++.....| +..-...|+++|+++|+.|..--.
T Consensus 38 ~~VaV~Gss~~~~~~~~~~~A~~lg~~La~~g~~lVsGGg 77 (217)
T 1wek_A 38 PLVSVFGSARFGEGHPAYEAGYRLGRALAEAGFGVVTGGG 77 (217)
T ss_dssp CEEEEECCSSCCTTSHHHHHHHHHHHHHHHHTCEEEECSC
T ss_pred CEEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEeCCh
Confidence 578899877665 677789999999999988766444
No 244
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=28.79 E-value=2.3e+02 Score=22.80 Aligned_cols=39 Identities=0% Similarity=-0.061 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFAT-RGVKASVITTPAN 46 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~-rGh~Vt~~t~~~~ 46 (367)
..+.||+++.+...+. +.+|.+++.+ .+++|..+.+...
T Consensus 10 ~~~~ri~vl~SG~gsn---l~all~~~~~~~~~eI~~Vis~~~ 49 (215)
T 3da8_A 10 SAPARLVVLASGTGSL---LRSLLDAAVGDYPARVVAVGVDRE 49 (215)
T ss_dssp CSSEEEEEEESSCCHH---HHHHHHHSSTTCSEEEEEEEESSC
T ss_pred CCCcEEEEEEeCChHH---HHHHHHHHhccCCCeEEEEEeCCc
Confidence 4567999998777443 3444444433 3468876665543
No 245
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=28.75 E-value=42 Score=28.57 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=26.1
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
..+|+|+-.+..|+ .+|..|+++||+|+++...
T Consensus 15 ~~~I~VIG~G~mG~-----~iA~~la~~G~~V~~~d~~ 47 (302)
T 1f0y_A 15 VKHVTVIGGGLMGA-----GIAQVAAATGHTVVLVDQT 47 (302)
T ss_dssp CCEEEEECCSHHHH-----HHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEECCCHHHH-----HHHHHHHhCCCeEEEEECC
Confidence 45799988766665 5788999999999988654
No 246
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=28.74 E-value=44 Score=27.29 Aligned_cols=30 Identities=23% Similarity=0.099 Sum_probs=20.9
Q ss_pred CCCCEEEecCCCcc---HHH----HHHHhCCCeEEEe
Q 041444 118 HKPDCLVADIFFPW---ATD----AAAKFGIPRLVFH 147 (367)
Q Consensus 118 ~~~D~vi~D~~~~~---~~~----~A~~lgiP~v~~~ 147 (367)
.+||+|++|-.... ... +.-.+|+|.|.+.
T Consensus 102 ~~PdlllvDG~Gi~HpR~~GlA~HlGv~l~~PtIGVA 138 (225)
T 2w36_A 102 TKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVA 138 (225)
T ss_dssp SCCSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEE
T ss_pred CCCCEEEEeCeEEEcCCCCCchhhhhhhhCCCEEEEE
Confidence 47999999975532 333 4555689999964
No 247
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=28.74 E-value=73 Score=26.73 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=31.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
..|+|..-+|.|=..-...||..|+++|++|.++=.+.
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34666667788999999999999999999999886554
No 248
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=28.64 E-value=49 Score=28.34 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=26.0
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+..+|.|+-.+..| ..+|+.|+++||+|+++...
T Consensus 20 ~m~~I~iIG~G~mG-----~~~A~~l~~~G~~V~~~dr~ 53 (310)
T 3doj_A 20 HMMEVGFLGLGIMG-----KAMSMNLLKNGFKVTVWNRT 53 (310)
T ss_dssp CSCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSS
T ss_pred cCCEEEEECccHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 45789998655444 67889999999999987643
No 249
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=28.56 E-value=89 Score=21.91 Aligned_cols=36 Identities=6% Similarity=0.170 Sum_probs=28.7
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
..+|++++..|.|+-.-...+-+.+.++|.++.+-+
T Consensus 4 ~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~ 39 (109)
T 2l2q_A 4 SMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEA 39 (109)
T ss_dssp CEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEE
T ss_pred ceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEE
Confidence 357999999999998777777788888998766543
No 250
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=28.46 E-value=79 Score=25.97 Aligned_cols=33 Identities=6% Similarity=-0.154 Sum_probs=23.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.+.++++..+. .--.+++++|+++|++|+++.-
T Consensus 9 ~k~vlVTGas~---giG~~ia~~l~~~G~~V~~~~r 41 (260)
T 2ae2_A 9 GCTALVTGGSR---GIGYGIVEELASLGASVYTCSR 41 (260)
T ss_dssp TCEEEEESCSS---HHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCc---HHHHHHHHHHHHCCCEEEEEeC
Confidence 34555555442 2346899999999999987753
No 251
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=28.39 E-value=31 Score=32.11 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=26.9
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
|...+...+|+|+-....| +.+|..|+++|++|+++-..
T Consensus 1 M~~~~~~~dVvIVGgG~aG-----l~aA~~La~~G~~V~liE~~ 39 (512)
T 3e1t_A 1 MSTRPEVFDLIVIGGGPGG-----STLASFVAMRGHRVLLLERE 39 (512)
T ss_dssp ----CEEEEEEEECCSHHH-----HHHHHHHHTTTCCEEEECSS
T ss_pred CCCCCccCCEEEECcCHHH-----HHHHHHHHhCCCCEEEEccC
Confidence 4333445688888766544 77888999999999999654
No 252
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=28.36 E-value=38 Score=26.81 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 041444 24 IVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t~~ 44 (367)
-.+|+++|+++||+|+.++-.
T Consensus 13 G~~l~~~L~~~g~~V~~~~R~ 33 (221)
T 3ew7_A 13 GSRILEEAKNRGHEVTAIVRN 33 (221)
T ss_dssp HHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHhCCCEEEEEEcC
Confidence 368899999999999988743
No 253
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=28.35 E-value=38 Score=27.38 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
..+|++.-.. |. --.+++++|+++||+|++++-.
T Consensus 21 ~~~ilVtGat--G~--iG~~l~~~L~~~G~~V~~~~R~ 54 (236)
T 3e8x_A 21 GMRVLVVGAN--GK--VARYLLSELKNKGHEPVAMVRN 54 (236)
T ss_dssp CCEEEEETTT--SH--HHHHHHHHHHHTTCEEEEEESS
T ss_pred CCeEEEECCC--Ch--HHHHHHHHHHhCCCeEEEEECC
Confidence 4566665432 32 3468899999999999988743
No 254
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...
Probab=28.31 E-value=55 Score=27.16 Aligned_cols=40 Identities=8% Similarity=0.106 Sum_probs=24.8
Q ss_pred CCCCCCccEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 1 MGSKIPQLHVFFFPFM-AHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p-~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
|+...+. ++++++.. +.|- --.+++++|+++|++|.++.-
T Consensus 1 Mm~~l~~-k~vlVTGa~~s~g--IG~aia~~l~~~G~~V~~~~r 41 (269)
T 2h7i_A 1 MTGLLDG-KRILVSGIITDSS--IAFHIARVAQEQGAQLVLTGF 41 (269)
T ss_dssp -CCTTTT-CEEEECCCSSTTS--HHHHHHHHHHHTTCEEEEEEC
T ss_pred CccccCC-CEEEEECCCCCCc--hHHHHHHHHHHCCCEEEEEec
Confidence 4444433 45555554 1232 346899999999999987653
No 255
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=28.29 E-value=47 Score=28.46 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=25.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+|+++-.++.| ..+|..|+++||+|+++.-.
T Consensus 3 mkI~IiGaGaiG-----~~~a~~L~~~g~~V~~~~r~ 34 (312)
T 3hn2_A 3 LRIAIVGAGALG-----LYYGALLQRSGEDVHFLLRR 34 (312)
T ss_dssp -CEEEECCSTTH-----HHHHHHHHHTSCCEEEECST
T ss_pred CEEEEECcCHHH-----HHHHHHHHHCCCeEEEEEcC
Confidence 578888877777 45688999999999998764
No 256
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=28.15 E-value=21 Score=32.88 Aligned_cols=34 Identities=6% Similarity=0.129 Sum_probs=26.5
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+.+||+++-.+-.| ..||+.|.+.||+||++-..
T Consensus 2 ~~M~iiI~G~G~vG-----~~la~~L~~~~~~v~vId~d 35 (461)
T 4g65_A 2 NAMKIIILGAGQVG-----GTLAENLVGENNDITIVDKD 35 (461)
T ss_dssp CCEEEEEECCSHHH-----HHHHHHTCSTTEEEEEEESC
T ss_pred CcCEEEEECCCHHH-----HHHHHHHHHCCCCEEEEECC
Confidence 56788887665444 56999999999999998654
No 257
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=28.11 E-value=70 Score=26.38 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=24.6
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.++++++..+.| --.+++++|+++|++|.++..
T Consensus 7 ~~k~vlVTGas~G---IG~aia~~la~~G~~V~~~~~ 40 (259)
T 3edm_A 7 TNRTIVVAGAGRD---IGRACAIRFAQEGANVVLTYN 40 (259)
T ss_dssp TTCEEEEETTTSH---HHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEECCCch---HHHHHHHHHHHCCCEEEEEcC
Confidence 3456666665543 347899999999999988743
No 258
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=28.00 E-value=73 Score=25.06 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=24.2
Q ss_pred HhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 114 LLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 114 ~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
.++..+||+||.|...+ .+..+++.+ ++|+++++...
T Consensus 46 ~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ls~~~ 89 (215)
T 1a04_A 46 LAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSN 89 (215)
T ss_dssp HHHHHCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEEECCC
T ss_pred HHHhcCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEECCC
Confidence 33445799999998765 355555543 46777766554
No 259
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=27.98 E-value=1.8e+02 Score=25.48 Aligned_cols=35 Identities=6% Similarity=0.058 Sum_probs=26.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+|.+-. .+.|-..-+..|+++|.++| +|.+.+..
T Consensus 41 ~~iwih~-~s~G~~~~~~~L~~~L~~~~-~v~v~~~~ 75 (374)
T 2xci_A 41 GALWVHT-ASIGEFNTFLPILKELKREH-RILLTYFS 75 (374)
T ss_dssp TCEEEEC-SSHHHHHHHHHHHHHHHHHS-CEEEEESC
T ss_pred CCEEEEc-CCHHHHHHHHHHHHHHHhcC-CEEEEEcC
Confidence 3454444 45588899999999999999 88766653
No 260
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=27.96 E-value=1e+02 Score=21.71 Aligned_cols=36 Identities=22% Similarity=0.438 Sum_probs=22.5
Q ss_pred HhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecc
Q 041444 114 LLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGT 149 (367)
Q Consensus 114 ~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~ 149 (367)
.++..+||+||.|.... .+..+.+.+ .+|+|.++..
T Consensus 42 ~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (136)
T 1mvo_A 42 KAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAK 84 (136)
T ss_dssp HHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECT
T ss_pred HHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 33445799999997664 355544433 4677776544
No 261
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=27.95 E-value=74 Score=26.61 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=24.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.++++++..+.| --.++|++|+++|++|.++.-
T Consensus 29 gk~vlVTGas~g---IG~aia~~la~~G~~V~~~~r 61 (277)
T 3gvc_A 29 GKVAIVTGAGAG---IGLAVARRLADEGCHVLCADI 61 (277)
T ss_dssp TCEEEETTTTST---HHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCcH---HHHHHHHHHHHCCCEEEEEeC
Confidence 466777766533 346899999999999987653
No 262
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=27.87 E-value=80 Score=21.61 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=23.5
Q ss_pred hhCCCCEEEecCCCc--cHHHHHHHh----CCCeEEEecchh
Q 041444 116 RDHKPDCLVADIFFP--WATDAAAKF----GIPRLVFHGTSF 151 (367)
Q Consensus 116 ~~~~~D~vi~D~~~~--~~~~~A~~l----giP~v~~~~~~~ 151 (367)
...+||+||.|.... .+..+++.+ .+|++.++....
T Consensus 42 ~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~ 83 (121)
T 1zh2_A 42 ATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSE 83 (121)
T ss_dssp HHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCCS
T ss_pred hcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEECCCC
Confidence 345799999998664 355555544 467777765543
No 263
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=27.85 E-value=1.3e+02 Score=23.11 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=32.2
Q ss_pred hhHHHHHHHhhhCCCCEEEecCCCc-------------c--HHHHHHHhCCCeEEEecchh
Q 041444 106 KLQEPLEQLLRDHKPDCLVADIFFP-------------W--ATDAAAKFGIPRLVFHGTSF 151 (367)
Q Consensus 106 ~~~~~l~~~l~~~~~D~vi~D~~~~-------------~--~~~~A~~lgiP~v~~~~~~~ 151 (367)
.+.+.+.+++++.+||.+..|..+. . +..++.+.|+|+.-+.+.-.
T Consensus 50 ~I~~~l~~~i~~~~Pd~vaiE~~F~~~n~~sal~lgqarGv~~la~~~~glpv~eytP~~v 110 (166)
T 4ep4_A 50 RIHARVLEVLHRFRPEAVAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQV 110 (166)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCCSSCSHHHHHHHHHHHHHHHHHHHHTCCEEEECHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEeehhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHH
Confidence 4566788888888999999885331 1 12346678999988866544
No 264
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=27.83 E-value=42 Score=29.51 Aligned_cols=33 Identities=9% Similarity=-0.087 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+..+|+|+-.+-.| +.+|..|+++|++|+++--
T Consensus 10 ~~~dVvIVGaG~aG-----l~~A~~L~~~G~~v~viE~ 42 (379)
T 3alj_A 10 KTRRAEVAGGGFAG-----LTAAIALKQNGWDVRLHEK 42 (379)
T ss_dssp -CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred CCCeEEEECCCHHH-----HHHHHHHHHCCCCEEEEec
Confidence 35678888755433 7788999999999999864
No 265
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=27.79 E-value=2.3e+02 Score=22.61 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=23.8
Q ss_pred CCCccEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEEEeCC
Q 041444 4 KIPQLHVFFFPFMAHGHMIPIVDMAKLFATRG--VKASVITTP 44 (367)
Q Consensus 4 ~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rG--h~Vt~~t~~ 44 (367)
.|.+.||+++.+.. ||. +.+|.+++.+.+ ++|..+.+.
T Consensus 4 ~m~~~ri~vl~SG~-gsn--l~all~~~~~~~l~~~I~~Visn 43 (209)
T 4ds3_A 4 SMKRNRVVIFISGG-GSN--MEALIRAAQAPGFPAEIVAVFSD 43 (209)
T ss_dssp --CCEEEEEEESSC-CHH--HHHHHHHHTSTTCSEEEEEEEES
T ss_pred cCCCccEEEEEECC-cHH--HHHHHHHHHcCCCCcEEEEEEEC
Confidence 35678899887766 443 556666666543 688766553
No 266
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=27.78 E-value=31 Score=25.07 Aligned_cols=33 Identities=9% Similarity=0.087 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
..+|+++-. |.+ -..+++.|.++|++|+++...
T Consensus 6 ~~~v~I~G~---G~i--G~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGL---GRF--GGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CCSEEEECC---SHH--HHHHHHHHHHTTCCCEEEESC
T ss_pred CCcEEEECC---CHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 456888764 333 356789999999999987643
No 267
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=27.64 E-value=71 Score=23.03 Aligned_cols=38 Identities=16% Similarity=0.370 Sum_probs=24.1
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 150 (367)
+.++..+||+||.|.... .+..+.+.+ ++|+|+++...
T Consensus 46 ~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~ 92 (147)
T 2zay_A 46 PVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRA 92 (147)
T ss_dssp HHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSC
T ss_pred HHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCC
Confidence 344455899999997654 345444432 46888776554
No 268
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=27.64 E-value=27 Score=32.15 Aligned_cols=31 Identities=6% Similarity=-0.044 Sum_probs=21.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.||+|+-.+- --|.-|..|+++|++||++=-
T Consensus 2 k~VvVIGaG~-----~GL~aA~~La~~G~~V~VlEa 32 (501)
T 4dgk_A 2 KPTTVIGAGF-----GGLALAIRLQAAGIPVLLLEQ 32 (501)
T ss_dssp CCEEEECCHH-----HHHHHHHHHHHTTCCEEEECC
T ss_pred CCEEEECCcH-----HHHHHHHHHHHCCCcEEEEcc
Confidence 3566664432 236677899999999999753
No 269
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=27.64 E-value=49 Score=27.19 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
...+|+|+-.+..| ..+|+.|+++||+|+++...
T Consensus 18 ~~~kIgiIG~G~mG-----~alA~~L~~~G~~V~~~~r~ 51 (245)
T 3dtt_A 18 QGMKIAVLGTGTVG-----RTMAGALADLGHEVTIGTRD 51 (245)
T ss_dssp -CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEEESC
T ss_pred CCCeEEEECCCHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 46789998655444 46789999999999987643
No 270
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Probab=27.63 E-value=97 Score=24.95 Aligned_cols=32 Identities=16% Similarity=-0.001 Sum_probs=21.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.++++..+ | .--.+++++|+++|++|+++.-
T Consensus 8 ~~vlVtGas-g--giG~~la~~l~~~G~~V~~~~r 39 (248)
T 2pnf_A 8 KVSLVTGST-R--GIGRAIAEKLASAGSTVIITGT 39 (248)
T ss_dssp CEEEETTCS-S--HHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCC-c--hHHHHHHHHHHHCCCEEEEEeC
Confidence 344454333 3 3456789999999999988754
No 271
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=27.62 E-value=55 Score=26.14 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=24.0
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
..+|+++-....| ..+++.|+++||+|+++..
T Consensus 19 ~~~I~iiG~G~mG-----~~la~~l~~~g~~V~~~~~ 50 (209)
T 2raf_A 19 GMEITIFGKGNMG-----QAIGHNFEIAGHEVTYYGS 50 (209)
T ss_dssp -CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECT
T ss_pred CCEEEEECCCHHH-----HHHHHHHHHCCCEEEEEcC
Confidence 5678888654444 5678999999999998854
No 272
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=27.52 E-value=49 Score=29.83 Aligned_cols=49 Identities=10% Similarity=0.192 Sum_probs=35.6
Q ss_pred HHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEE-EEEe
Q 041444 275 ECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLEASGRNFI-WVVR 323 (367)
Q Consensus 275 ~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~~~~~l-W~~~ 323 (367)
...+|-..++...-|.|-++|+..-.....++++++|++.|..++ -++.
T Consensus 254 ~Y~~w~~~~~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~ 303 (410)
T 4dik_A 254 HYVSVAKGDPKKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFS 303 (410)
T ss_dssp HHHHHHHTCCCTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHhhcccccccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEec
Confidence 345676554445557778999998777888899999999998754 3443
No 273
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=27.41 E-value=1.1e+02 Score=21.64 Aligned_cols=38 Identities=8% Similarity=0.064 Sum_probs=21.3
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
|...+++.+|+++- .+-.-...|.+.|.+.|++|+.+.
T Consensus 1 M~~~~~~~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~ 38 (142)
T 3cg4_A 1 MSLAEHKGDVMIVD----DDAHVRIAVKTILSDAGFHIISAD 38 (142)
T ss_dssp -----CCCEEEEEC----SCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCCCCCCeEEEEc----CCHHHHHHHHHHHHHCCeEEEEeC
Confidence 44344566777764 455556666777777777766443
No 274
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=27.32 E-value=77 Score=22.33 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=22.0
Q ss_pred hhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecc
Q 041444 115 LRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGT 149 (367)
Q Consensus 115 l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~ 149 (367)
+++.+||+||.|.... .+..+.+.+ ++|++.++..
T Consensus 42 ~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 83 (134)
T 3f6c_A 42 VETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAK 83 (134)
T ss_dssp HHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC
T ss_pred HHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCC
Confidence 3445799999998664 355555443 4676666544
No 275
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=27.28 E-value=72 Score=26.59 Aligned_cols=39 Identities=13% Similarity=0.318 Sum_probs=30.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHhC--CCcEEEEEec
Q 041444 286 NSVVYICFGSLANFTSAQLMEIATGLEAS--GRNFIWVVRK 324 (367)
Q Consensus 286 ~~vIyvsfGS~~~~~~~~~~~~~~al~~~--~~~~lW~~~~ 324 (367)
.++|+|+|||-..-..+.++.+++.+++. +..|-|.+..
T Consensus 10 ~aillv~hGS~~~~~~~~~~~~~~~l~~~~~~~~V~~af~~ 50 (269)
T 2xvy_A 10 TGILLVAFGTSVEEARPALDKMGDRVRAAHPDIPVRWAYTA 50 (269)
T ss_dssp EEEEEEECCCCCTTTTHHHHHHHHHHHHHCTTSCEEEEESC
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHHHHHCCCCeEEeehhh
Confidence 57999999998766666888888888753 4678898765
No 276
>1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A*
Probab=27.11 E-value=92 Score=24.42 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=25.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
.++++-.+..|...-+..+++.|+++|+.|..+.
T Consensus 29 p~vv~~hG~~~~~~~~~~~~~~l~~~g~~v~~~d 62 (236)
T 1zi8_A 29 PVIVIAQDIFGVNAFMRETVSWLVDQGYAAVCPD 62 (236)
T ss_dssp EEEEEECCTTBSCHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHhCCcEEEecc
Confidence 3444444555667788999999999999887654
No 277
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=27.06 E-value=51 Score=23.65 Aligned_cols=39 Identities=15% Similarity=0.316 Sum_probs=25.6
Q ss_pred HHHhhh-CCCCEEEecCCCc-c--HHHHHHH-------hCCCeEEEecch
Q 041444 112 EQLLRD-HKPDCLVADIFFP-W--ATDAAAK-------FGIPRLVFHGTS 150 (367)
Q Consensus 112 ~~~l~~-~~~D~vi~D~~~~-~--~~~~A~~-------lgiP~v~~~~~~ 150 (367)
.+.+++ .+||+||.|.... . +..+.+. -++|+|+++...
T Consensus 42 ~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~ 91 (140)
T 3lua_A 42 YSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSD 91 (140)
T ss_dssp HTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCC
T ss_pred HHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCC
Confidence 345556 7899999998766 3 4444332 357888876554
No 278
>3fet_A Electron transfer flavoprotein subunit alpha RELA protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum}
Probab=27.02 E-value=1e+02 Score=23.70 Aligned_cols=39 Identities=13% Similarity=-0.126 Sum_probs=27.8
Q ss_pred HHHHHHhhhCCCCEEEecCCCcc---HHHHHHHhCCCeEEEecc
Q 041444 109 EPLEQLLRDHKPDCLVADIFFPW---ATDAAAKFGIPRLVFHGT 149 (367)
Q Consensus 109 ~~l~~~l~~~~~D~vi~D~~~~~---~~~~A~~lgiP~v~~~~~ 149 (367)
+.+.++++ +||+|++-..... +..+|.+||+|.+..++.
T Consensus 61 ~~l~~~~~--~p~~Vl~g~t~~g~~vaprlAa~L~~~~~sdv~~ 102 (166)
T 3fet_A 61 EGILKIAG--NYDYIAIGSTEVGREIAGYLSFKTGFYTATEIFS 102 (166)
T ss_dssp HHHHHHHT--TCSEEEEECSHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred HHHHHHHc--CCCEEEEcCCCccccHHHHHHHHhCCCceeeEEE
Confidence 34555555 8999998764432 456899999999986544
No 279
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=26.93 E-value=1.1e+02 Score=21.64 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=22.2
Q ss_pred CCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecch
Q 041444 118 HKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGTS 150 (367)
Q Consensus 118 ~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 150 (367)
.+||+||.|.... .+..+.+.+ ++|+|+++...
T Consensus 58 ~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~ 99 (143)
T 2qvg_A 58 IHPKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAY 99 (143)
T ss_dssp CCCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCC
T ss_pred CCCCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCC
Confidence 6799999998664 355555543 46777765543
No 280
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=26.86 E-value=98 Score=24.68 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=25.5
Q ss_pred ccEEEEEcCCC---cccHHHHHHHHHHHHhCCCeEEEE
Q 041444 7 QLHVFFFPFMA---HGHMIPIVDMAKLFATRGVKASVI 41 (367)
Q Consensus 7 ~~~vl~~p~p~---~gH~~p~l~La~~L~~rGh~Vt~~ 41 (367)
..+|.++.... .-+..-...|+++|+++|+.|..-
T Consensus 22 ~~~v~Vfggs~~~~~~~~~~A~~lg~~La~~g~~lV~G 59 (199)
T 3qua_A 22 QWAVCVYCASGPTHPELLELAAEVGSSIAARGWTLVSG 59 (199)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEC
Confidence 46899997665 123466788999999999987543
No 281
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=26.71 E-value=80 Score=24.57 Aligned_cols=37 Identities=19% Similarity=0.429 Sum_probs=30.3
Q ss_pred EEEE-cCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 10 VFFF-PFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 10 vl~~-p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
|+|. +-+|.|=..-...||..|+++|++|.++-.+..
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~ 41 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQ 41 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4444 456789999999999999999999999987643
No 282
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=26.71 E-value=36 Score=25.86 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=27.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.+++++.... | +.|++.+++.|.++|.+|+++ ....
T Consensus 24 ~~~llIaGG~-G-ItPl~sm~~~l~~~~~~v~l~-g~r~ 59 (158)
T 3lrx_A 24 GKILAIGAYT-G-IVEVYPIAKAWQEIGNDVTTL-HVTF 59 (158)
T ss_dssp SEEEEEEETT-H-HHHHHHHHHHHHHHTCEEEEE-EECB
T ss_pred CeEEEEEccC-c-HHHHHHHHHHHHhcCCcEEEE-EeCC
Confidence 4566555433 4 899999999999999999998 6543
No 283
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=26.64 E-value=66 Score=26.92 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=24.3
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.++++++..+.| --.++|++|+++|++|.++.-
T Consensus 23 ~~k~~lVTGas~G---IG~aia~~la~~G~~V~~~~r 56 (279)
T 3sju_A 23 RPQTAFVTGVSSG---IGLAVARTLAARGIAVYGCAR 56 (279)
T ss_dssp --CEEEEESTTSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEeCCCCH---HHHHHHHHHHHCCCEEEEEeC
Confidence 3467777766643 457899999999999887653
No 284
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=26.63 E-value=1.3e+02 Score=21.06 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=22.4
Q ss_pred CCCCEEEecCCCc--cHHHHHHH-------hCCCeEEEecch
Q 041444 118 HKPDCLVADIFFP--WATDAAAK-------FGIPRLVFHGTS 150 (367)
Q Consensus 118 ~~~D~vi~D~~~~--~~~~~A~~-------lgiP~v~~~~~~ 150 (367)
.+||+||.|.... .+..+.+. -++|+|+++...
T Consensus 54 ~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp CCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCC
T ss_pred CCCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCC
Confidence 6899999998664 35554443 347888876654
No 285
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=26.62 E-value=92 Score=24.70 Aligned_cols=38 Identities=16% Similarity=0.362 Sum_probs=25.2
Q ss_pred HhhhCCCCEEEecCCCc--cHHHHHHHh----CCCeEEEecchh
Q 041444 114 LLRDHKPDCLVADIFFP--WATDAAAKF----GIPRLVFHGTSF 151 (367)
Q Consensus 114 ~l~~~~~D~vi~D~~~~--~~~~~A~~l----giP~v~~~~~~~ 151 (367)
.++..+||+||.|.... .+..+++.+ ++|+++++....
T Consensus 43 ~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~~~ 86 (230)
T 2oqr_A 43 EFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 86 (230)
T ss_dssp HHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECCHH
T ss_pred HHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCCCc
Confidence 33445799999998664 355444433 688888776644
No 286
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=26.37 E-value=71 Score=25.15 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=22.6
Q ss_pred CCCCEEEecCCCc--cHHHHHHH---------hCCCeEEEecch
Q 041444 118 HKPDCLVADIFFP--WATDAAAK---------FGIPRLVFHGTS 150 (367)
Q Consensus 118 ~~~D~vi~D~~~~--~~~~~A~~---------lgiP~v~~~~~~ 150 (367)
.+||+||+|..+. .+..+++. .++|+|+++...
T Consensus 118 ~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~ 161 (206)
T 3mm4_A 118 LPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHD 161 (206)
T ss_dssp CSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCC
Confidence 3899999998765 35555443 357888877654
No 287
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=26.34 E-value=1.2e+02 Score=27.41 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=34.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCCCc
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTPANA 47 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~r-Gh~Vt~~t~~~~~ 47 (367)
..|+++..+|.|=..-...||..|+++ |++|.++..+...
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 456677788899999999999999999 9999999987654
No 288
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Probab=26.33 E-value=70 Score=26.39 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=22.9
Q ss_pred EEEEEcCCCc-ccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 9 HVFFFPFMAH-GHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 9 ~vl~~p~p~~-gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
++++++..+. |-+ -.+++++|+++|++|+++.-.
T Consensus 10 k~vlVTGas~~~gI--G~~ia~~l~~~G~~V~~~~r~ 44 (265)
T 1qsg_A 10 KRILVTGVASKLSI--AYGIAQAMHREGAELAFTYQN 44 (265)
T ss_dssp CEEEECCCCSTTSH--HHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEECCCCCCCH--HHHHHHHHHHCCCEEEEEcCc
Confidence 4555555431 222 368999999999999887543
No 289
>2cg8_A Dihydroneopterin aldolase 6-hydroxymethyl-7,8- dihydropterin synthase; lyase/transferase, folate biosynthesis, pyrophosphokinase, lyase; 2.9A {Streptococcus pneumoniae}
Probab=26.29 E-value=42 Score=28.32 Aligned_cols=31 Identities=26% Similarity=0.301 Sum_probs=24.4
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhCCCc
Q 041444 287 SVVYICFGSLANFTSAQLMEIATGLEASGRN 317 (367)
Q Consensus 287 ~vIyvsfGS~~~~~~~~~~~~~~al~~~~~~ 317 (367)
..+|+++||...-+.+.++....+|++.+.+
T Consensus 120 ~~~~i~lGsN~gd~~~~l~~A~~~L~~~~~~ 150 (270)
T 2cg8_A 120 QRAFIALGSNMGDKQANLKQAIDKLRARGIH 150 (270)
T ss_dssp EEEEEEEEECSSSHHHHHHHHHHHHHHTTCE
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHhccCCe
Confidence 3699999999876778888888888873333
No 290
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=26.27 E-value=1.4e+02 Score=20.93 Aligned_cols=34 Identities=18% Similarity=0.392 Sum_probs=26.2
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEecC
Q 041444 288 VVYICFGSLANFTSAQLMEIATGLEASGRNFIWVVRKN 325 (367)
Q Consensus 288 vIyvsfGS~~~~~~~~~~~~~~al~~~~~~~lW~~~~~ 325 (367)
-||+-|.| +++.+.+++.-+...|.+++.-+.+.
T Consensus 3 qifvvfss----dpeilkeivreikrqgvrvvllysdq 36 (162)
T 2l82_A 3 QIFVVFSS----DPEILKEIVREIKRQGVRVVLLYSDQ 36 (162)
T ss_dssp EEEEEEES----CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred eEEEEecC----CHHHHHHHHHHHHhCCeEEEEEecCc
Confidence 46665543 78899999999999999988887543
No 291
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=26.26 E-value=70 Score=23.36 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=20.4
Q ss_pred HHHHhhh-CCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecc
Q 041444 111 LEQLLRD-HKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGT 149 (367)
Q Consensus 111 l~~~l~~-~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~ 149 (367)
..+.++. .+||+||.|.... .+..+.+.+ ++|+|+++..
T Consensus 41 a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~ 87 (154)
T 2qsj_A 41 ALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGE 87 (154)
T ss_dssp HHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEEEC---
T ss_pred HHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEEEeCC
Confidence 3344555 7899999998654 234443332 5677776544
No 292
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=26.25 E-value=87 Score=22.26 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=24.0
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 150 (367)
+.++..+||+||.|.... .+..+.+.+ ++|+|+++...
T Consensus 48 ~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 94 (143)
T 3cnb_A 48 DLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGAL 94 (143)
T ss_dssp HHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSC
T ss_pred HHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCC
Confidence 444556899999997654 355544433 35777766543
No 293
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=26.19 E-value=1.1e+02 Score=25.00 Aligned_cols=32 Identities=9% Similarity=0.007 Sum_probs=22.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
++++++..+ | ---.+++++|+++|++|.++.-
T Consensus 9 k~vlVTGas-~--gIG~~ia~~l~~~G~~V~~~~r 40 (259)
T 4e6p_A 9 KSALITGSA-R--GIGRAFAEAYVREGATVAIADI 40 (259)
T ss_dssp CEEEEETCS-S--HHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCC-c--HHHHHHHHHHHHCCCEEEEEeC
Confidence 445555444 2 2346899999999999987653
No 294
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=26.18 E-value=44 Score=26.57 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 041444 24 IVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t~ 43 (367)
-..|+++|+++||+|+.++-
T Consensus 13 G~~l~~~L~~~g~~V~~~~R 32 (224)
T 3h2s_A 13 GSAIVAEARRRGHEVLAVVR 32 (224)
T ss_dssp HHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHCCCEEEEEEe
Confidence 36889999999999998864
No 295
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=26.17 E-value=2.5e+02 Score=22.45 Aligned_cols=34 Identities=9% Similarity=0.118 Sum_probs=22.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCC--eEEEEeCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGV--KASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh--~Vt~~t~~ 44 (367)
.||+|+.++. |+ .+.++.++|.+.+| +|..+.+.
T Consensus 2 ~rI~vl~SG~-g~--~~~~~l~~l~~~~~~~~i~~Vvs~ 37 (216)
T 2ywr_A 2 LKIGVLVSGR-GS--NLQAIIDAIESGKVNASIELVISD 37 (216)
T ss_dssp EEEEEEECSC-CH--HHHHHHHHHHTTSSCEEEEEEEES
T ss_pred CEEEEEEeCC-cH--HHHHHHHHHHhCCCCCeEEEEEeC
Confidence 4788886655 32 36777788888888 77654443
No 296
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=26.11 E-value=95 Score=26.58 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=23.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.+.++++..+.| --.+++++|+++|++|.++.-
T Consensus 8 ~k~vlVTGas~g---IG~~la~~l~~~G~~Vv~~~r 40 (319)
T 3ioy_A 8 GRTAFVTGGANG---VGIGLVRQLLNQGCKVAIADI 40 (319)
T ss_dssp TCEEEEETTTST---HHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEcCCchH---HHHHHHHHHHHCCCEEEEEEC
Confidence 345666655433 346899999999999887653
No 297
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=26.10 E-value=72 Score=31.03 Aligned_cols=41 Identities=5% Similarity=0.090 Sum_probs=30.3
Q ss_pred CCccEEEEEcCCCc---ccHHHHHH-HHHHHHh-CCCeEEEEeCCC
Q 041444 5 IPQLHVFFFPFMAH---GHMIPIVD-MAKLFAT-RGVKASVITTPA 45 (367)
Q Consensus 5 ~~~~~vl~~p~p~~---gH~~p~l~-La~~L~~-rGh~Vt~~t~~~ 45 (367)
.++.+|+..|..+. ||..|++. +.+-|.. -||+|+++..+.
T Consensus 380 ~~~l~~~~~ps~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~ 425 (690)
T 3p0j_A 380 AKPHACMWMPALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDW 425 (690)
T ss_dssp SSCEEEEECCCCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTT
T ss_pred CCcceEEecCCCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecc
Confidence 35678999997664 89999888 5544433 399999998874
No 298
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=26.01 E-value=62 Score=27.42 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=25.5
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.+|+|+-....|. .+++.|+++||+|+++..
T Consensus 3 m~~I~iiG~G~mG~-----~~a~~l~~~G~~V~~~d~ 34 (302)
T 2h78_A 3 MKQIAFIGLGHMGA-----PMATNLLKAGYLLNVFDL 34 (302)
T ss_dssp CCEEEEECCSTTHH-----HHHHHHHHTTCEEEEECS
T ss_pred CCEEEEEeecHHHH-----HHHHHHHhCCCeEEEEcC
Confidence 45889987766664 678999999999998854
No 299
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=25.97 E-value=58 Score=30.10 Aligned_cols=33 Identities=24% Similarity=0.145 Sum_probs=24.2
Q ss_pred HHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEE
Q 041444 110 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLV 145 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~ 145 (367)
.+++++++.++|++|... ....+|+++|||++.
T Consensus 392 el~~~i~~~~pDL~ig~~---~~~~~a~k~gIP~~~ 424 (483)
T 3pdi_A 392 VLLKTVDEYQADILIAGG---RNMYTALKGRVPFLD 424 (483)
T ss_dssp HHHHHHHHTTCSEEECCG---GGHHHHHHTTCCBCC
T ss_pred HHHHHHHhcCCCEEEECC---chhHHHHHcCCCEEE
Confidence 455666667899998753 456789999999864
No 300
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=25.93 E-value=84 Score=26.26 Aligned_cols=33 Identities=24% Similarity=0.150 Sum_probs=24.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.++++++..+.| --.++|++|+++|++|.++.-
T Consensus 27 ~k~vlVTGas~G---IG~aia~~l~~~G~~V~~~~r 59 (277)
T 4dqx_A 27 QRVCIVTGGGSG---IGRATAELFAKNGAYVVVADV 59 (277)
T ss_dssp TCEEEEETTTSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCcH---HHHHHHHHHHHCCCEEEEEeC
Confidence 466777766543 457899999999999987753
No 301
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=25.92 E-value=58 Score=27.70 Aligned_cols=33 Identities=24% Similarity=0.196 Sum_probs=23.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+|+++-. .|.+ -.+++++|+++||+|+.++-.
T Consensus 12 ~~ilVtGa--tG~i--G~~l~~~L~~~g~~V~~l~R~ 44 (318)
T 2r6j_A 12 SKILIFGG--TGYI--GNHMVKGSLKLGHPTYVFTRP 44 (318)
T ss_dssp CCEEEETT--TSTT--HHHHHHHHHHTTCCEEEEECT
T ss_pred CeEEEECC--CchH--HHHHHHHHHHCCCcEEEEECC
Confidence 35666643 2333 357889999999999988754
No 302
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=25.86 E-value=87 Score=27.21 Aligned_cols=34 Identities=6% Similarity=0.020 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.+.||+|+. --+--..+.++|.++||+|..+.+
T Consensus 20 ~~~mrIvf~G-----~~~fa~~~L~~L~~~~~~i~~Vvt 53 (329)
T 2bw0_A 20 FQSMKIAVIG-----QSLFGQEVYCHLRKEGHEVVGVFT 53 (329)
T ss_dssp -CCCEEEEEC-----CHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEEc-----CcHHHHHHHHHHHHCCCeEEEEEe
Confidence 3457999993 223333567889999999875554
No 303
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=25.82 E-value=79 Score=26.12 Aligned_cols=32 Identities=19% Similarity=-0.034 Sum_probs=24.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
.++++++..+.| --.++|++|+++|++|.++.
T Consensus 11 ~k~vlVTGas~G---IG~aia~~la~~G~~V~~~~ 42 (262)
T 3ksu_A 11 NKVIVIAGGIKN---LGALTAKTFALESVNLVLHY 42 (262)
T ss_dssp TCEEEEETCSSH---HHHHHHHHHTTSSCEEEEEE
T ss_pred CCEEEEECCCch---HHHHHHHHHHHCCCEEEEEe
Confidence 467777766644 45789999999999998864
No 304
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=25.81 E-value=88 Score=26.49 Aligned_cols=33 Identities=18% Similarity=-0.019 Sum_probs=23.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.++++++..+. ---.+++++|+++|++|.++.-
T Consensus 31 gk~vlVTGas~---gIG~~la~~l~~~G~~V~~~~r 63 (301)
T 3tjr_A 31 GRAAVVTGGAS---GIGLATATEFARRGARLVLSDV 63 (301)
T ss_dssp TCEEEEETTTS---HHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCCC---HHHHHHHHHHHHCCCEEEEEEC
Confidence 35666665553 2457899999999999887653
No 305
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=25.76 E-value=64 Score=28.56 Aligned_cols=38 Identities=13% Similarity=-0.006 Sum_probs=27.1
Q ss_pred ccEEEEEcCCCcc-c---HHHHHHHHHHH-HhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHG-H---MIPIVDMAKLF-ATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~g-H---~~p~l~La~~L-~~rGh~Vt~~t~~ 44 (367)
+.||+++...-.+ | +..-..++++| .++||+|+.+-..
T Consensus 3 k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~~g~~v~~i~~~ 45 (377)
T 1ehi_A 3 KKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIA 45 (377)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEEC
T ss_pred CcEEEEEeCCCCCCcceeHHHHHHHHHHhCcccCcEEEEEEEc
Confidence 5688877543323 3 23568889999 9999999987543
No 306
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=25.74 E-value=81 Score=25.91 Aligned_cols=33 Identities=9% Similarity=-0.032 Sum_probs=23.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.|+++++..+.| --.+++++|+++|++|.++.-
T Consensus 8 gk~~lVTGas~g---IG~a~a~~l~~~G~~V~~~~r 40 (255)
T 4eso_A 8 GKKAIVIGGTHG---MGLATVRRLVEGGAEVLLTGR 40 (255)
T ss_dssp TCEEEEETCSSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCCH---HHHHHHHHHHHCCCEEEEEeC
Confidence 355666655533 447899999999999987753
No 307
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=25.73 E-value=75 Score=24.51 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=28.4
Q ss_pred cEEEEEcCCCc---ccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFMAH---GHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~---gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+|+++|.-|. ---.++..|++.|.++|.+|.|...+
T Consensus 24 ~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHP 63 (180)
T 1pno_A 24 SKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHP 63 (180)
T ss_dssp SEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 46777774432 12368999999999999999998865
No 308
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=25.73 E-value=55 Score=26.90 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=27.3
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.+.+|.|+-.+..|- .|++.|+++||+|+.+..
T Consensus 5 ~~mkI~IIG~G~~G~-----sLA~~L~~~G~~V~~~~~ 37 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTV-----NMAEKLDSVGHYVTVLHA 37 (232)
T ss_dssp CCCEEEEECCSCCCS-----CHHHHHHHTTCEEEECSS
T ss_pred CCcEEEEEeeCHHHH-----HHHHHHHHCCCEEEEecC
Confidence 456899999888774 589999999999998764
No 309
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=25.70 E-value=53 Score=27.36 Aligned_cols=34 Identities=12% Similarity=-0.030 Sum_probs=24.6
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.++++++..+. ---.++|++|+++|++|.+...
T Consensus 26 ~~k~~lVTGas~---GIG~aia~~la~~G~~Vv~~~~ 59 (267)
T 3u5t_A 26 TNKVAIVTGASR---GIGAAIAARLASDGFTVVINYA 59 (267)
T ss_dssp -CCEEEEESCSS---HHHHHHHHHHHHHTCEEEEEES
T ss_pred CCCEEEEeCCCC---HHHHHHHHHHHHCCCEEEEEcC
Confidence 346677776654 2457899999999999987643
No 310
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=25.69 E-value=1.6e+02 Score=23.79 Aligned_cols=40 Identities=8% Similarity=-0.142 Sum_probs=34.2
Q ss_pred CCccEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 5 IPQLHVFFFPFM-AHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 5 ~~~~~vl~~p~p-~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
..+..|-++..+ +.|=..-++.++.....+|.+|.++.+.
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~ 65 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC 65 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 345677777777 8899999999999999999999999865
No 311
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=25.66 E-value=43 Score=29.40 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=25.9
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
..+|+|+-....| +.+|.+|+++|++|+++--.
T Consensus 5 ~~dVvIIGgGi~G-----l~~A~~La~~G~~V~lle~~ 37 (382)
T 1y56_B 5 KSEIVVIGGGIVG-----VTIAHELAKRGEEVTVIEKR 37 (382)
T ss_dssp BCSEEEECCSHHH-----HHHHHHHHHTTCCEEEECSS
T ss_pred cCCEEEECCCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 5678888665444 77899999999999998644
No 312
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=25.45 E-value=83 Score=27.83 Aligned_cols=38 Identities=21% Similarity=0.524 Sum_probs=24.5
Q ss_pred HHhhhCCCCEEEecCCCcc--HHHHHHHh-----CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFPW--ATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~~--~~~~A~~l-----giP~v~~~~~~ 150 (367)
+.+++.+||+||.|..++. +..+++++ ++|+|+++...
T Consensus 43 ~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~lt~~~ 87 (394)
T 3eq2_A 43 QIFESEQPDLVICDLRMPQIDGLELIRRIRQTASETPIIVLSGAG 87 (394)
T ss_dssp HHHHHSCCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEEC---C
T ss_pred HHHhhCCCCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEEEEcCC
Confidence 3445678999999987763 56665553 57888776543
No 313
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=25.39 E-value=1.2e+02 Score=25.62 Aligned_cols=39 Identities=10% Similarity=0.138 Sum_probs=31.1
Q ss_pred cEEEEE--cCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 8 LHVFFF--PFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 8 ~~vl~~--p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
.+++++ +-++.|=..-...||..|+++|.+|.++-.+..
T Consensus 92 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 92 NNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp CCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 344443 356789999999999999999999999977653
No 314
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*
Probab=25.33 E-value=93 Score=26.50 Aligned_cols=33 Identities=21% Similarity=0.094 Sum_probs=23.2
Q ss_pred cEEEEEcCCC-cccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 8 LHVFFFPFMA-HGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 8 ~~vl~~p~p~-~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
.++++++..+ .|- --.+++++|+++|++|.++.
T Consensus 9 gk~~lVTGa~~s~G--IG~aia~~la~~G~~Vv~~~ 42 (315)
T 2o2s_A 9 GQTAFVAGVADSHG--YGWAIAKHLASAGARVALGT 42 (315)
T ss_dssp TCEEEEECCSSSSS--HHHHHHHHHHTTTCEEEEEE
T ss_pred CCEEEEeCCCCCCC--hHHHHHHHHHHCCCEEEEEe
Confidence 4566666652 222 34689999999999998764
No 315
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=25.33 E-value=50 Score=28.43 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=25.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.+|+|+-.++.| ..+|..|++.||+|+++.-..
T Consensus 3 mkI~IiGaGaiG-----~~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 3 LNILVIGTGAIG-----SFYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp CEEEEESCCHHH-----HHHHHHHHHTTCEEEEECSTT
T ss_pred CEEEEECcCHHH-----HHHHHHHHhCCCeEEEEeCCh
Confidence 578888666655 467889999999999987653
No 316
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=25.21 E-value=77 Score=24.53 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=28.4
Q ss_pred cEEEEEcCCCc---ccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFMAH---GHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~---gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+|+++|.-|. ---.++..|++.|.++|.+|.|...+
T Consensus 23 ~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHP 62 (184)
T 1d4o_A 23 NSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHP 62 (184)
T ss_dssp SEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 46777775432 12368999999999999999998865
No 317
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=25.21 E-value=96 Score=26.60 Aligned_cols=34 Identities=9% Similarity=0.119 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
++.+|++.-.. |- --.+|+++|+++||+|+.+.-
T Consensus 26 ~~~~vlVtGat--G~--iG~~l~~~L~~~g~~V~~~~r 59 (343)
T 2b69_A 26 DRKRILITGGA--GF--VGSHLTDKLMMDGHEVTVVDN 59 (343)
T ss_dssp -CCEEEEETTT--SH--HHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEEcCc--cH--HHHHHHHHHHHCCCEEEEEeC
Confidence 44566665433 32 246789999999999998864
No 318
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=25.18 E-value=1.4e+02 Score=21.62 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=27.5
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
|...+++.+|+++- .+-.-...+...|.+.|++|+.+..
T Consensus 1 Ms~~~~~~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~~ 39 (154)
T 2rjn_A 1 MSLNYKNYTVMLVD----DEQPILNSLKRLIKRLGCNIITFTS 39 (154)
T ss_dssp ---CCSCCEEEEEC----SCHHHHHHHHHHHHTTTCEEEEESC
T ss_pred CCCCCCCCeEEEEc----CCHHHHHHHHHHHHHcCCeEEEeCC
Confidence 55556778898886 5566677788888889999886554
No 319
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A
Probab=25.16 E-value=94 Score=26.54 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=20.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
.+|++.-.. |-+ -.+|+++|+++||+|+.+.
T Consensus 10 ~~vlVTGat--GfI--G~~l~~~Ll~~G~~V~~~~ 40 (338)
T 2rh8_A 10 KTACVVGGT--GFV--ASLLVKLLLQKGYAVNTTV 40 (338)
T ss_dssp CEEEEECTT--SHH--HHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCc--hHH--HHHHHHHHHHCCCEEEEEE
Confidence 455554422 322 3578999999999998755
No 320
>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} SCOP: c.1.10.8 PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A*
Probab=25.05 E-value=3.2e+02 Score=24.75 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=49.4
Q ss_pred EEecccccccHHHHHHHHHhcCCceEEeCcCCCCCcCchhhhhcCCCCCcchHHH---hhhhcCC--CCCcEEEEecCCC
Q 041444 222 VAVNSFYELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASIDELEC---LKWLNSK--QPNSVVYICFGSL 296 (367)
Q Consensus 222 ~l~nt~~~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l---~~wLd~~--~~~~vIyvsfGS~ 296 (367)
++-.--+.+++--+++++...+|-=+-|||-. .++++ .+-||-. +.+=.+..=||.-
T Consensus 280 WIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~------------------~p~elv~L~~~LnP~~epGRlTLI~RmGa~ 341 (462)
T 3rzi_A 280 WIGERTRQIDGAHIAFAQVIANPVGVKLGPNM------------------TPELAVEYVERLDPHNKPGRLTLVSRMGNH 341 (462)
T ss_dssp EECTTTCCTTSHHHHHHHHCCSCEEEEECTTC------------------CHHHHHHHHHHHCTTCCTTSEEEEECCCTT
T ss_pred eeccccCCCCccHHHHHhcCCCCeeEeECCCC------------------CHHHHHHHHHHhCCCCCCCeEEEEEccCCc
Confidence 34444555666666666665555556677753 23333 3445432 3332333445543
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEecC
Q 041444 297 ANFTSAQLMEIATGLEASGRNFIWVVRKN 325 (367)
Q Consensus 297 ~~~~~~~~~~~~~al~~~~~~~lW~~~~~ 325 (367)
- =.+.+-.+++|..+.|.+|+|..++-
T Consensus 342 k--v~~~LP~li~aV~~~G~~VvW~cDPM 368 (462)
T 3rzi_A 342 K--VRDLLPPIVEKVQATGHQVIWQCDPM 368 (462)
T ss_dssp T--HHHHHHHHHHHHHHTSCCCEEEECCS
T ss_pred h--hhhhHHHHHHHHHHCCCCeEEEeCCC
Confidence 1 12557788999999999999998753
No 321
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=25.05 E-value=97 Score=26.77 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=26.5
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+++.||+|+-.|..+- +..++|.++||+|..+.+.+
T Consensus 2 ~~mmrIvf~Gtp~fa~-----~~L~~L~~~~~~v~~Vvt~p 37 (317)
T 3rfo_A 2 NAMIKVVFMGTPDFSV-----PVLRRLIEDGYDVIGVVTQP 37 (317)
T ss_dssp CTTSEEEEECCSTTHH-----HHHHHHHHTTCEEEEEECCC
T ss_pred CCceEEEEEeCCHHHH-----HHHHHHHHCCCcEEEEEeCC
Confidence 4568999999887653 44577888899998666543
No 322
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=24.99 E-value=71 Score=25.70 Aligned_cols=34 Identities=24% Similarity=0.608 Sum_probs=23.1
Q ss_pred hhCCCCEEEecCCCc--cHHHHHHHh----CCCeEEEecc
Q 041444 116 RDHKPDCLVADIFFP--WATDAAAKF----GIPRLVFHGT 149 (367)
Q Consensus 116 ~~~~~D~vi~D~~~~--~~~~~A~~l----giP~v~~~~~ 149 (367)
+..+||+||.|.... .+..+++.+ ++|+|+++..
T Consensus 46 ~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 46 RELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp HHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEET
T ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCC
Confidence 445799999998664 355555443 6788887654
No 323
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=24.97 E-value=1e+02 Score=21.54 Aligned_cols=27 Identities=4% Similarity=0.060 Sum_probs=21.7
Q ss_pred cccHHHHHHHHHHHHhC-CC-eEEEEeCC
Q 041444 18 HGHMIPIVDMAKLFATR-GV-KASVITTP 44 (367)
Q Consensus 18 ~gH~~p~l~La~~L~~r-Gh-~Vt~~t~~ 44 (367)
.......+.+|..+++. || +|+++-..
T Consensus 15 ~~~~~~al~~a~~~~~~~g~~~v~vff~~ 43 (117)
T 1jx7_A 15 SESLFNSLRLAIALREQESNLDLRLFLMS 43 (117)
T ss_dssp CSHHHHHHHHHHHHHHHCTTCEEEEEECG
T ss_pred cHHHHHHHHHHHHHHhcCCCccEEEEEEc
Confidence 35566679999999998 99 99887765
No 324
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=24.91 E-value=51 Score=30.01 Aligned_cols=34 Identities=9% Similarity=-0.015 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
++..+|+|+-.+..| +.+|..|++ ||+|+++-..
T Consensus 34 ~~~mkIaVIGlG~mG-----~~lA~~La~-G~~V~~~D~~ 67 (432)
T 3pid_A 34 SEFMKITISGTGYVG-----LSNGVLIAQ-NHEVVALDIV 67 (432)
T ss_dssp -CCCEEEEECCSHHH-----HHHHHHHHT-TSEEEEECSC
T ss_pred cCCCEEEEECcCHHH-----HHHHHHHHc-CCeEEEEecC
Confidence 345689988765545 356777887 9999987643
No 325
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=24.88 E-value=53 Score=27.49 Aligned_cols=31 Identities=10% Similarity=-0.021 Sum_probs=23.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+|+|+-.+..| ..+|..|+++||+|+++...
T Consensus 2 ~i~iiG~G~~G-----~~~a~~l~~~g~~V~~~~r~ 32 (291)
T 1ks9_A 2 KITVLGCGALG-----QLWLTALCKQGHEVQGWLRV 32 (291)
T ss_dssp EEEEECCSHHH-----HHHHHHHHHTTCEEEEECSS
T ss_pred eEEEECcCHHH-----HHHHHHHHhCCCCEEEEEcC
Confidence 57777654444 47889999999999998654
No 326
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=24.85 E-value=66 Score=22.40 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=23.9
Q ss_pred HhhhCCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecch
Q 041444 114 LLRDHKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGTS 150 (367)
Q Consensus 114 ~l~~~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 150 (367)
.++..+||+||.|.... .+..+.+++ ++|++.++...
T Consensus 41 ~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 86 (127)
T 2jba_A 41 QLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARG 86 (127)
T ss_dssp TCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETT
T ss_pred HHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCC
Confidence 44456899999998654 355554443 46777776543
No 327
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=24.83 E-value=67 Score=26.94 Aligned_cols=45 Identities=9% Similarity=0.035 Sum_probs=37.1
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHH--------HHhC-CCeEEEEeCCCCcchh
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKL--------FATR-GVKASVITTPANAPYV 50 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~--------L~~r-Gh~Vt~~t~~~~~~~~ 50 (367)
.+.+|++.+.++-.|-.-..-++.. |..+ |++|+.+-..-..+.+
T Consensus 119 ~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~i 172 (262)
T 1xrs_B 119 RKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDF 172 (262)
T ss_dssp SCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHH
Confidence 3678999999999999999999977 9999 9999988765444333
No 328
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*
Probab=24.82 E-value=78 Score=26.25 Aligned_cols=32 Identities=13% Similarity=-0.061 Sum_probs=23.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
++++++..+.| --.+++++|+++|++|+++.-
T Consensus 12 k~~lVTGas~g---IG~~ia~~l~~~G~~V~~~~r 43 (276)
T 1mxh_A 12 PAAVITGGARR---IGHSIAVRLHQQGFRVVVHYR 43 (276)
T ss_dssp CEEEETTCSSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCCcH---HHHHHHHHHHHCCCEEEEEeC
Confidence 56666655532 457899999999999988754
No 329
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2
Probab=24.80 E-value=1e+02 Score=25.48 Aligned_cols=32 Identities=9% Similarity=0.080 Sum_probs=22.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
++++++..+. .--.+++++|+++|++|+++.-
T Consensus 10 k~vlVTGas~---gIG~~ia~~l~~~G~~V~~~~r 41 (270)
T 1yde_A 10 KVVVVTGGGR---GIGAGIVRAFVNSGARVVICDK 41 (270)
T ss_dssp CEEEEETCSS---HHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCc---HHHHHHHHHHHHCCCEEEEEeC
Confidence 5555655442 2357899999999999988753
No 330
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=24.77 E-value=1e+02 Score=25.37 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=24.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.++++++..+.| --.+++++|+++|++|.++.-
T Consensus 11 ~k~vlVTGas~g---IG~aia~~l~~~G~~V~~~~r 43 (264)
T 3ucx_A 11 DKVVVISGVGPA---LGTTLARRCAEQGADLVLAAR 43 (264)
T ss_dssp TCEEEEESCCTT---HHHHHHHHHHHTTCEEEEEES
T ss_pred CcEEEEECCCcH---HHHHHHHHHHHCcCEEEEEeC
Confidence 456666666543 347899999999999987653
No 331
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=24.61 E-value=1.2e+02 Score=24.10 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=26.5
Q ss_pred ccEEEEEcCCC---c----ccHHHHHHHHHHHHhCCCeEEE
Q 041444 7 QLHVFFFPFMA---H----GHMIPIVDMAKLFATRGVKASV 40 (367)
Q Consensus 7 ~~~vl~~p~p~---~----gH~~p~l~La~~L~~rGh~Vt~ 40 (367)
..+|.++.... . -...-...|+++|+++|+.|..
T Consensus 23 m~~IaV~Gss~~~~~~~~~~~~~~A~~lg~~LA~~G~~vVs 63 (195)
T 1rcu_A 23 MKKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLVFN 63 (195)
T ss_dssp CCEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEEecCCCCCccccHHHHHHHHHHHHHHHHCCCEEEe
Confidence 45789888643 2 5678899999999999988665
No 332
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=24.48 E-value=67 Score=29.78 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=22.9
Q ss_pred HHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEE
Q 041444 110 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLV 145 (367)
Q Consensus 110 ~l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~ 145 (367)
.+++++++.++|++|.. .....+|+++|||++-
T Consensus 408 el~~~i~~~~pDL~ig~---~~~~~ia~k~gIP~~~ 440 (492)
T 3u7q_A 408 EFEEFVKRIKPDLIGSG---IKEKFIFQKMGIPFRE 440 (492)
T ss_dssp HHHHHHHHHCCSEEEEC---HHHHHHHHHTTCCEEE
T ss_pred HHHHHHHhcCCcEEEeC---cchhHHHHHcCCCEEe
Confidence 34455555688888875 3446788888988874
No 333
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=24.42 E-value=73 Score=29.14 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=20.3
Q ss_pred HHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEE
Q 041444 111 LEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (367)
Q Consensus 111 l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 146 (367)
+++++++.++|++|.+.. ...+|+++|+|++.+
T Consensus 377 l~~~i~~~~pDl~ig~~~---~~~~a~k~gip~~~~ 409 (458)
T 1mio_B 377 VHQWIKNEGVDLLISNTY---GKFIAREENIPFVRF 409 (458)
T ss_dssp HHHHHHHSCCSEEEESGG---GHHHHHHHTCCEEEC
T ss_pred HHHHHHhcCCCEEEeCcc---hHHHHHHcCCCEEEe
Confidence 444455567777776642 455677777777663
No 334
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=24.38 E-value=1.4e+02 Score=24.62 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=20.8
Q ss_pred CCCEEEe-cCCC-ccHHHHHHHhCCCeEEE
Q 041444 119 KPDCLVA-DIFF-PWATDAAAKFGIPRLVF 146 (367)
Q Consensus 119 ~~D~vi~-D~~~-~~~~~~A~~lgiP~v~~ 146 (367)
++|+|+. +.-. ..+..+|+++|+|.+..
T Consensus 100 ~~DvIvg~~~gGi~~A~~lA~~L~~p~~~v 129 (243)
T 3dez_A 100 EVEVIAGTATAGIPHGAIIADKMNLPLAYI 129 (243)
T ss_dssp TCCEEEEETTTTHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEecCchHHHHHHHHHHcCCCEEEE
Confidence 7899884 4333 35778999999998764
No 335
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=24.34 E-value=62 Score=28.65 Aligned_cols=33 Identities=12% Similarity=0.034 Sum_probs=25.6
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.+.+|+|+-.+- .-+.+|..|+++|++|+++--
T Consensus 4 ~~~~V~IVGaG~-----aGl~~A~~L~~~G~~v~v~E~ 36 (397)
T 2vou_A 4 TTDRIAVVGGSI-----SGLTAALMLRDAGVDVDVYER 36 (397)
T ss_dssp CCSEEEEECCSH-----HHHHHHHHHHHTTCEEEEECS
T ss_pred CCCcEEEECCCH-----HHHHHHHHHHhCCCCEEEEec
Confidence 456888887553 347889999999999999853
No 336
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=24.20 E-value=94 Score=22.23 Aligned_cols=37 Identities=11% Similarity=-0.053 Sum_probs=26.8
Q ss_pred cEEEEEcCCCc-ccH-HHHHHHHHHHHhCC--CeEEEEeCC
Q 041444 8 LHVFFFPFMAH-GHM-IPIVDMAKLFATRG--VKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~-gH~-~p~l~La~~L~~rG--h~Vt~~t~~ 44 (367)
.+++|+-+.+. -.. +-.+.+|....++| |+|+++-..
T Consensus 8 ~K~~ivi~s~d~~~~~~~al~~A~~a~~~G~~~eV~i~~~G 48 (117)
T 2fb6_A 8 DKLTILWTTDNKDTVFNMLAMYALNSKNRGWWKHINIILWG 48 (117)
T ss_dssp SEEEEEECCCCHHHHHHTHHHHHHHHHHHTSCSEEEEEECS
T ss_pred CeEEEEEEcCChHHHHHHHHHHHHHHHHcCCCCcEEEEEEC
Confidence 67777766653 222 44778888999999 899988755
No 337
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=23.93 E-value=86 Score=25.16 Aligned_cols=32 Identities=13% Similarity=-0.019 Sum_probs=22.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
++++++..+. .--.+++++|+++|++|.++.-
T Consensus 3 k~vlITGas~---gIG~~ia~~l~~~G~~V~~~~r 34 (235)
T 3l77_A 3 KVAVITGASR---GIGEAIARALARDGYALALGAR 34 (235)
T ss_dssp CEEEEESCSS---HHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCc---HHHHHHHHHHHHCCCEEEEEeC
Confidence 4455555443 2457899999999999887653
No 338
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=23.93 E-value=67 Score=27.01 Aligned_cols=34 Identities=15% Similarity=0.017 Sum_probs=25.4
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+..+|+|+-.+..| ..+|..|+++||+|+++...
T Consensus 3 ~~~kV~VIGaG~mG-----~~iA~~la~~G~~V~l~d~~ 36 (283)
T 4e12_A 3 GITNVTVLGTGVLG-----SQIAFQTAFHGFAVTAYDIN 36 (283)
T ss_dssp SCCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHhCCCeEEEEeCC
Confidence 34689988554444 56889999999999987643
No 339
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=23.88 E-value=83 Score=26.37 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
+.++++++..+.| --.++|++|+++|++|.++.
T Consensus 7 ~gk~vlVTGas~G---IG~aia~~la~~G~~V~~~~ 39 (280)
T 3tox_A 7 EGKIAIVTGASSG---IGRAAALLFAREGAKVVVTA 39 (280)
T ss_dssp TTCEEEESSTTSH---HHHHHHHHHHHTTCEEEECC
T ss_pred CCCEEEEECCCcH---HHHHHHHHHHHCCCEEEEEE
Confidence 3466777766542 34689999999999987653
No 340
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=23.84 E-value=53 Score=25.55 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=22.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.+|++.-. .| .--.+++++|+++||+|+.++-
T Consensus 4 ~~ilVtGa--tG--~iG~~l~~~l~~~g~~V~~~~r 35 (206)
T 1hdo_A 4 KKIAIFGA--TG--QTGLTTLAQAVQAGYEVTVLVR 35 (206)
T ss_dssp CEEEEEST--TS--HHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEcC--Cc--HHHHHHHHHHHHCCCeEEEEEe
Confidence 45666543 23 2357889999999999998864
No 341
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=23.77 E-value=80 Score=26.96 Aligned_cols=32 Identities=6% Similarity=0.132 Sum_probs=25.9
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+.+|+++... ....+++++.++||+|.++...
T Consensus 2 ~m~Ililg~g------~~~~l~~a~~~~G~~v~~~~~~ 33 (334)
T 2r85_A 2 KVRIATYASH------SALQILKGAKDEGFETIAFGSS 33 (334)
T ss_dssp CSEEEEESST------THHHHHHHHHHTTCCEEEESCG
T ss_pred ceEEEEECCh------hHHHHHHHHHhCCCEEEEEECC
Confidence 3578888765 5678999999999999988765
No 342
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=23.75 E-value=69 Score=28.56 Aligned_cols=39 Identities=15% Similarity=0.111 Sum_probs=26.9
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATR-GVKASVITTP 44 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~r-Gh~Vt~~t~~ 44 (367)
|...++..+|+|+-.+. .-+..|.+|+++ |++|+++=-.
T Consensus 1 m~~m~~~~~v~IiGaG~-----~Gl~aA~~L~~~~g~~v~v~E~~ 40 (399)
T 1v0j_A 1 MQPMTARFDLFVVGSGF-----FGLTIAERVATQLDKRVLVLERR 40 (399)
T ss_dssp ---CCCSCSEEEECCSH-----HHHHHHHHHHHHSCCCEEEECSS
T ss_pred CCcccccCCEEEECCCH-----HHHHHHHHHHHhCCCCEEEEeCC
Confidence 54444467888886653 457888999998 9999998543
No 343
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=23.69 E-value=83 Score=25.56 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 041444 24 IVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t~~ 44 (367)
-.+++++|+++|++|+++.-.
T Consensus 20 G~~~a~~l~~~G~~V~~~~r~ 40 (258)
T 3afn_B 20 GLATARLFARAGAKVGLHGRK 40 (258)
T ss_dssp HHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHHHCCCEEEEECCC
Confidence 468999999999999887643
No 344
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=23.68 E-value=66 Score=26.62 Aligned_cols=34 Identities=6% Similarity=-0.055 Sum_probs=24.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.++++++..+.| --.++|++|+++|++|.++.-.
T Consensus 27 ~k~vlVTGas~g---IG~aia~~l~~~G~~V~~~~r~ 60 (260)
T 3gem_A 27 SAPILITGASQR---VGLHCALRLLEHGHRVIISYRT 60 (260)
T ss_dssp CCCEEESSTTSH---HHHHHHHHHHHTTCCEEEEESS
T ss_pred CCEEEEECCCCH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 356666665533 4578999999999999887643
No 345
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=23.63 E-value=1.3e+02 Score=21.14 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=22.8
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
|.....+.+|+++- .+-.-...+.+.|.+.|++|+.+.
T Consensus 1 Ms~~~~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~ 38 (136)
T 3hdv_A 1 MSLVAARPLVLVVD----DNAVNREALILYLKSRGIDAVGAD 38 (136)
T ss_dssp ------CCEEEEEC----SCHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCCCCCCeEEEEC----CCHHHHHHHHHHHHHcCceEEEeC
Confidence 43334567788776 555666677777778888877654
No 346
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=23.61 E-value=63 Score=28.61 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=25.4
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+..+|+|+-..-. -+.+|..|+++|++|+++=-
T Consensus 25 ~~~dV~IVGaG~a-----Gl~~A~~L~~~G~~v~v~E~ 57 (398)
T 2xdo_A 25 SDKNVAIIGGGPV-----GLTMAKLLQQNGIDVSVYER 57 (398)
T ss_dssp TTCEEEEECCSHH-----HHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCEEEECCCHH-----HHHHHHHHHHCCCCEEEEeC
Confidence 3457888876543 37788999999999999864
No 347
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=23.52 E-value=84 Score=24.82 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=28.2
Q ss_pred cEEEEEcCCCc---ccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFMAH---GHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~---gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+|+++|.-+. ---.++..|++.|.++|.+|.|...+
T Consensus 47 ~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHP 86 (203)
T 2fsv_C 47 SKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHP 86 (203)
T ss_dssp SEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 46777774431 12368899999999999999998865
No 348
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=23.51 E-value=64 Score=27.20 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=26.1
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+.+|+++-....| +..|..|+++|++|+++-..
T Consensus 15 ~~~vvIIG~G~aG-----l~aA~~l~~~g~~v~lie~~ 47 (323)
T 3f8d_A 15 KFDVIIVGLGPAA-----YGAALYSARYMLKTLVIGET 47 (323)
T ss_dssp EEEEEEECCSHHH-----HHHHHHHHHTTCCEEEEESS
T ss_pred ccCEEEECccHHH-----HHHHHHHHHCCCcEEEEecc
Confidence 4578888766655 67889999999999998754
No 349
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=23.46 E-value=1.6e+02 Score=24.54 Aligned_cols=33 Identities=12% Similarity=0.003 Sum_probs=24.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.++++++..+. ---.++|++|+++|++|.++.-
T Consensus 29 ~k~~lVTGas~---GIG~aia~~la~~G~~V~~~~~ 61 (280)
T 4da9_A 29 RPVAIVTGGRR---GIGLGIARALAASGFDIAITGI 61 (280)
T ss_dssp CCEEEEETTTS---HHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEecCCC---HHHHHHHHHHHHCCCeEEEEeC
Confidence 45666666553 2457899999999999988763
No 350
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa}
Probab=23.41 E-value=82 Score=25.91 Aligned_cols=36 Identities=6% Similarity=-0.021 Sum_probs=25.7
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
++-|+++... .|+..-+..+++.|+++|++|..+-.
T Consensus 46 ~p~vv~~hG~-~~~~~~~~~~~~~l~~~g~~v~~~d~ 81 (315)
T 4f0j_A 46 GRTILLMHGK-NFCAGTWERTIDVLADAGYRVIAVDQ 81 (315)
T ss_dssp SCEEEEECCT-TCCGGGGHHHHHHHHHTTCEEEEECC
T ss_pred CCeEEEEcCC-CCcchHHHHHHHHHHHCCCeEEEeec
Confidence 3455555544 45555688999999999999877654
No 351
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=23.39 E-value=1.8e+02 Score=21.83 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=28.5
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+.||+++.+++..- .-+......|.+.|++|+++++..
T Consensus 2 ~~ki~il~~~g~~~-~e~~~~~~~l~~ag~~v~~vs~~~ 39 (168)
T 3l18_A 2 SMKVLFLSADGFED-LELIYPLHRIKEEGHEVYVASFQR 39 (168)
T ss_dssp CCEEEEECCTTBCH-HHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CcEEEEEeCCCccH-HHHHHHHHHHHHCCCEEEEEECCC
Confidence 56899998887543 445556677788999999998753
No 352
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A
Probab=23.37 E-value=76 Score=24.97 Aligned_cols=34 Identities=15% Similarity=0.012 Sum_probs=24.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
..+++-.+..|+..-+..+++.|+++|+.|..+-
T Consensus 23 ~~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d 56 (251)
T 3dkr_A 23 TGVVLLHAYTGSPNDMNFMARALQRSGYGVYVPL 56 (251)
T ss_dssp EEEEEECCTTCCGGGGHHHHHHHHHTTCEEEECC
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 3444445555666778899999999999876543
No 353
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.30 E-value=1.6e+02 Score=20.84 Aligned_cols=33 Identities=18% Similarity=0.428 Sum_probs=22.7
Q ss_pred CCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecch
Q 041444 118 HKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGTS 150 (367)
Q Consensus 118 ~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 150 (367)
.+||+||.|.... .+..+.+.+ ++|+|+++...
T Consensus 61 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~ 102 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSS 102 (149)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCC
Confidence 6899999998664 355555543 46777776554
No 354
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=23.24 E-value=1.7e+02 Score=32.43 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=0.0
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHhhhhhcCCCcceeeeeCCCccCCCCCCCCcc
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYVSKSVERANELGIELDVKTIKFPSVEAGLPDGCENL 85 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (367)
+...|+++-.|+.|-..-..+++.+.+++|.+|.|++.+......... ..++++..+.....
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~-------~~G~dl~~l~v~~~----------- 1487 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR-------KLGVDIDNLLCSQP----------- 1487 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHH-------HTTCCTTTCEEECC-----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHH-------HcCCCchhceeecC-----------
Q ss_pred cccchhhhHHHHHHHHHHHHhhHHHHHHHhhhCCCCEEEecCC
Q 041444 86 DAITNEVNKELIVKFLGATTKLQEPLEQLLRDHKPDCLVADIF 128 (367)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~ 128 (367)
...+.....++.++++.++|+||.|.+
T Consensus 1488 ----------------~~~E~~l~~~~~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1488 ----------------DTGEQALEICDALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp ----------------SSHHHHHHHHHHHHHHTCCSEEEESCG
T ss_pred ----------------ChHHHHHHHHHHHHhcCCCCEEEEcCh
No 355
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=23.23 E-value=1.2e+02 Score=23.83 Aligned_cols=33 Identities=9% Similarity=0.054 Sum_probs=24.8
Q ss_pred EEEEEcCCCc----ccHHHHHHHHHHHHhCCCeEEEE
Q 041444 9 HVFFFPFMAH----GHMIPIVDMAKLFATRGVKASVI 41 (367)
Q Consensus 9 ~vl~~p~p~~----gH~~p~l~La~~L~~rGh~Vt~~ 41 (367)
.|.++..... -+..-...|+++|+++|+.|..-
T Consensus 3 ~V~V~gss~~~~~~~~~~~A~~lg~~La~~g~~lV~G 39 (191)
T 1t35_A 3 TICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYG 39 (191)
T ss_dssp EEEEECCSSCCSSTHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred EEEEEECCCCCCChHHHHHHHHHHHHHHHCCCEEEEC
Confidence 5888887653 35567889999999999886543
No 356
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=23.22 E-value=1e+02 Score=25.65 Aligned_cols=32 Identities=13% Similarity=-0.038 Sum_probs=24.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
.++++++..+.| --.++|++|+++|++|.++.
T Consensus 31 gk~~lVTGas~G---IG~aia~~la~~G~~V~~~~ 62 (273)
T 3uf0_A 31 GRTAVVTGAGSG---IGRAIAHGYARAGAHVLAWG 62 (273)
T ss_dssp TCEEEEETTTSH---HHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCCcH---HHHHHHHHHHHCCCEEEEEc
Confidence 456666665542 45789999999999998876
No 357
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=23.20 E-value=56 Score=31.75 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=26.1
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
++.+|+++-...-| +..|..|+++||+||++-..
T Consensus 390 ~~~~VvIIGgG~AG-----l~aA~~La~~G~~V~liE~~ 423 (690)
T 3k30_A 390 SDARVLVVGAGPSG-----LEAARALGVRGYDVVLAEAG 423 (690)
T ss_dssp SCCEEEEECCSHHH-----HHHHHHHHHHTCEEEEECSS
T ss_pred ccceEEEECCCHHH-----HHHHHHHHHCCCeEEEEecC
Confidence 35678888766544 67788999999999998653
No 358
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=23.18 E-value=1e+02 Score=25.27 Aligned_cols=38 Identities=13% Similarity=0.290 Sum_probs=25.2
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
+.++..+||+||.|..++ .+..+++.+ ++|+|.++...
T Consensus 167 ~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~~~ 211 (254)
T 2ayx_A 167 NVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANA 211 (254)
T ss_dssp HHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEESST
T ss_pred HHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCC
Confidence 445567899999997664 344444432 68888876654
No 359
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=23.16 E-value=1e+02 Score=28.02 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=25.8
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+..||+|+-....| +.+|+.|+++||+|+..=.
T Consensus 8 ~~k~v~viG~G~sG-----~s~A~~l~~~G~~V~~~D~ 40 (451)
T 3lk7_A 8 ENKKVLVLGLARSG-----EAAARLLAKLGAIVTVNDG 40 (451)
T ss_dssp TTCEEEEECCTTTH-----HHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEEeeCHHH-----HHHHHHHHhCCCEEEEEeC
Confidence 45789999886644 3569999999999998644
No 360
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Probab=23.08 E-value=63 Score=26.66 Aligned_cols=33 Identities=6% Similarity=-0.030 Sum_probs=22.5
Q ss_pred EEEEEcCCCc-ccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAH-GHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~-gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.++++..+. |- --.+++++|+++|++|+++.-
T Consensus 9 k~vlVTGas~~~g--IG~~ia~~l~~~G~~V~~~~r 42 (261)
T 2wyu_A 9 KKALVMGVTNQRS--LGFAIAAKLKEAGAEVALSYQ 42 (261)
T ss_dssp CEEEEESCCSSSS--HHHHHHHHHHHHTCEEEEEES
T ss_pred CEEEEECCCCCCc--HHHHHHHHHHHCCCEEEEEcC
Confidence 4555555431 22 236899999999999988754
No 361
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=23.05 E-value=1.4e+02 Score=25.84 Aligned_cols=35 Identities=9% Similarity=0.019 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
|++.||+|+..|..+ .+..++|.++||+|..+.+.
T Consensus 5 ~~~mrivf~Gt~~fa-----~~~L~~L~~~~~~v~~Vvt~ 39 (318)
T 3q0i_A 5 SQSLRIVFAGTPDFA-----ARHLAALLSSEHEIIAVYTQ 39 (318)
T ss_dssp --CCEEEEECCSHHH-----HHHHHHHHTSSSEEEEEECC
T ss_pred ccCCEEEEEecCHHH-----HHHHHHHHHCCCcEEEEEcC
Confidence 457899999887533 34567788899998766554
No 362
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=23.01 E-value=1.2e+02 Score=28.24 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=35.0
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
...|+++..++.|=..-+..|+..|+++|++|.+++.+..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~ 140 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 4468889999999999999999999999999999987654
No 363
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=23.00 E-value=87 Score=24.82 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=28.3
Q ss_pred cEEEEEcCCCc---ccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFMAH---GHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~---gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+|+++|.-|. -=-.++..|++.|.++|.+|.|...+
T Consensus 46 ~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHP 85 (207)
T 1djl_A 46 NSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHP 85 (207)
T ss_dssp SEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCc
Confidence 46777774432 22467899999999999999998865
No 364
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=22.98 E-value=1.7e+02 Score=23.42 Aligned_cols=21 Identities=5% Similarity=0.088 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeC
Q 041444 23 PIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 23 p~l~La~~L~~rGh~Vt~~t~ 43 (367)
--.+++++|+++|++|+++.-
T Consensus 19 iG~~~a~~l~~~G~~V~~~~r 39 (244)
T 3d3w_A 19 IGRGTVQALHATGARVVAVSR 39 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEeC
Confidence 356889999999999987653
No 365
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=22.92 E-value=1.4e+02 Score=21.77 Aligned_cols=39 Identities=5% Similarity=0.101 Sum_probs=26.0
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
|...+++.+|+++- .+-.-...|.+.|.+.|++|..+..
T Consensus 1 M~~~~~~~~ILivd----d~~~~~~~l~~~L~~~g~~v~~~~~ 39 (154)
T 3gt7_A 1 MSLSNRAGEILIVE----DSPTQAEHLKHILEETGYQTEHVRN 39 (154)
T ss_dssp ------CCEEEEEC----SCHHHHHHHHHHHHTTTCEEEEESS
T ss_pred CCcccCCCcEEEEe----CCHHHHHHHHHHHHHCCCEEEEeCC
Confidence 54445678898885 5667777788888888999876653
No 366
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=22.91 E-value=45 Score=29.13 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCeEEEEe
Q 041444 24 IVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t 42 (367)
=+.+|..|+++||+|+++=
T Consensus 16 Gl~~A~~La~~G~~V~v~E 34 (397)
T 3oz2_A 16 GSTAARYAAKYGLKTLMIE 34 (397)
T ss_dssp HHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHCCCcEEEEe
Confidence 3678999999999999983
No 367
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*
Probab=22.89 E-value=92 Score=25.41 Aligned_cols=39 Identities=23% Similarity=0.031 Sum_probs=24.5
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
|....+.. .++++..+ |- --.+++++|+++|++|+++.-
T Consensus 1 m~~~l~~k-~vlITGas-gg--iG~~~a~~l~~~G~~V~~~~r 39 (261)
T 1gee_A 1 MYKDLEGK-VVVITGSS-TG--LGKSMAIRFATEKAKVVVNYR 39 (261)
T ss_dssp CCGGGTTC-EEEETTCS-SH--HHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCCCC-EEEEeCCC-Ch--HHHHHHHHHHHCCCEEEEEcC
Confidence 43333333 44444333 32 347899999999999988754
No 368
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=22.89 E-value=64 Score=29.47 Aligned_cols=32 Identities=19% Similarity=0.037 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
++.+|.++-. |++- +.+|..|+++||+|+.+=
T Consensus 20 ~m~~IaViGl---GYVG--Lp~A~~~A~~G~~V~g~D 51 (444)
T 3vtf_A 20 HMASLSVLGL---GYVG--VVHAVGFALLGHRVVGYD 51 (444)
T ss_dssp CCCEEEEECC---SHHH--HHHHHHHHHHTCEEEEEC
T ss_pred CCCEEEEEcc---CHHH--HHHHHHHHhCCCcEEEEE
Confidence 4567888844 4443 889999999999998763
No 369
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Probab=22.88 E-value=1.3e+02 Score=24.14 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=23.8
Q ss_pred EEEEEcCCCccc--HHHHHHHHHHHHhCCCeEEEEe
Q 041444 9 HVFFFPFMAHGH--MIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 9 ~vl~~p~p~~gH--~~p~l~La~~L~~rGh~Vt~~t 42 (367)
..+++-.+..|+ ..-+..++..|+++|++|..+-
T Consensus 28 p~vvl~HG~~~~~~~~~~~~~~~~l~~~g~~vi~~D 63 (251)
T 2wtm_A 28 PLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRAD 63 (251)
T ss_dssp EEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEEcCCCcccccccHHHHHHHHHHCCCEEEEec
Confidence 344444445566 6677889999999999986653
No 370
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=22.84 E-value=55 Score=29.81 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=25.3
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
...+|+|+-.+. .-+..|..|+++|++|+++=-.
T Consensus 10 ~~~dvvVIGaG~-----~GL~aA~~La~~G~~V~vlE~~ 43 (453)
T 2bcg_G 10 TDYDVIVLGTGI-----TECILSGLLSVDGKKVLHIDKQ 43 (453)
T ss_dssp CBCSEEEECCSH-----HHHHHHHHHHHTTCCEEEECSS
T ss_pred ccCCEEEECcCH-----HHHHHHHHHHHCCCeEEEEeCC
Confidence 445787776553 3477888999999999998543
No 371
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=22.81 E-value=1.2e+02 Score=21.22 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=21.1
Q ss_pred HhhhCCCCEEEecCCCc--cHHHHHHHh------CCCeEEEecc
Q 041444 114 LLRDHKPDCLVADIFFP--WATDAAAKF------GIPRLVFHGT 149 (367)
Q Consensus 114 ~l~~~~~D~vi~D~~~~--~~~~~A~~l------giP~v~~~~~ 149 (367)
.++..+||+||.|...+ .+..+.+.+ .+|++.++..
T Consensus 43 ~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ii~ls~~ 86 (130)
T 1dz3_A 43 MLEEKRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAF 86 (130)
T ss_dssp HHHHHCCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEEEEEET
T ss_pred HHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcEEEEecC
Confidence 33445799999998664 355444432 2455555443
No 372
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=22.78 E-value=49 Score=27.34 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=23.9
Q ss_pred CCCEEE-ecCCCc-cHHHHHHHhCCCeEEEecch
Q 041444 119 KPDCLV-ADIFFP-WATDAAAKFGIPRLVFHGTS 150 (367)
Q Consensus 119 ~~D~vi-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 150 (367)
.||+|| .|...- -+..-|.++|||+|.++-+.
T Consensus 114 ~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn 147 (241)
T 2xzm_B 114 EPRVLIVTDPRSDFQAIKEASYVNIPVIALCDSD 147 (241)
T ss_dssp CCSEEEESCTTTTHHHHHHHTTTTCCEEECCCSS
T ss_pred CCCEEEEECCCcchHHHHHHHHhCCCEEEEecCC
Confidence 588765 777554 46778999999999986553
No 373
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=22.68 E-value=1.1e+02 Score=25.11 Aligned_cols=41 Identities=20% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHhhh--CCCCEEEecCCCccH---------HHHHHHhCCCeEEEecc
Q 041444 109 EPLEQLLRD--HKPDCLVADIFFPWA---------TDAAAKFGIPRLVFHGT 149 (367)
Q Consensus 109 ~~l~~~l~~--~~~D~vi~D~~~~~~---------~~~A~~lgiP~v~~~~~ 149 (367)
+.+.+.+++ .++|+||+|-...+. .++|+.++.|++.+...
T Consensus 119 ~~I~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~ 170 (242)
T 3qxc_A 119 DNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHD 170 (242)
T ss_dssp HHHHHHHHHGGGTCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHhcCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcC
No 374
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Probab=22.67 E-value=1.2e+02 Score=24.35 Aligned_cols=35 Identities=3% Similarity=-0.020 Sum_probs=24.0
Q ss_pred EEEEEcCCCccc--HHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGH--MIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH--~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.++++-.+..|+ ...+..+++.|+++|+.|..+-.
T Consensus 47 p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 83 (270)
T 3pfb_A 47 DMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDF 83 (270)
T ss_dssp EEEEEECCTTCCTTCHHHHHHHHHHHHTTCEEEEECC
T ss_pred CEEEEEcCCCCCccccHHHHHHHHHHhCCcEEEEEcc
Confidence 334444444444 66688999999999999877643
No 375
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=22.62 E-value=82 Score=29.82 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=33.5
Q ss_pred CCccEEEEE-cCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 5 IPQLHVFFF-PFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 5 ~~~~~vl~~-p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.+..+++++ .-+|.|=..-...||..|+++|++|-++..+.
T Consensus 5 ~~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp SSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 344555544 46678999999999999999999999999886
No 376
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=22.62 E-value=57 Score=28.58 Aligned_cols=36 Identities=6% Similarity=-0.118 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCcc--cH---HHHHHHHHHHHhCCCeEEEEe
Q 041444 6 PQLHVFFFPFMAHG--HM---IPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 6 ~~~~vl~~p~p~~g--H~---~p~l~La~~L~~rGh~Vt~~t 42 (367)
++.||+++- +|.| |= ..-..+++.|.+.||+|+.+-
T Consensus 2 ~kkkv~vl~-GG~S~E~evSl~Sa~~v~~aL~~~gy~v~~i~ 42 (357)
T 4fu0_A 2 QNKKIAVIF-GGNSTEYEVSLQSASAVFENINTNKFDIIPIG 42 (357)
T ss_dssp CCEEEEEEE-ECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEE
T ss_pred CCCEEEEEE-CCCccchHHHHHHHHHHHHHHhHhCCEEEEEE
Confidence 456887773 3333 43 344578899999999998763
No 377
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=22.53 E-value=1.7e+02 Score=23.83 Aligned_cols=38 Identities=11% Similarity=0.214 Sum_probs=26.3
Q ss_pred cEEEEEcCCCc----------c-cHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 8 LHVFFFPFMAH----------G-HMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 8 ~~vl~~p~p~~----------g-H~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.||+|+-.... | ...=+......|.+.|++|+++++..
T Consensus 4 ~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g 52 (243)
T 1rw7_A 4 KKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETG 52 (243)
T ss_dssp CEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred ceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 47777765421 1 33556667778888999999999763
No 378
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=22.52 E-value=1.5e+02 Score=25.65 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCcccHHHHHHHHHHHHh--CCCeEEEEeC
Q 041444 5 IPQLHVFFFPFMAHGHMIPIVDMAKLFAT--RGVKASVITT 43 (367)
Q Consensus 5 ~~~~~vl~~p~p~~gH~~p~l~La~~L~~--rGh~Vt~~t~ 43 (367)
++..+|+|.-..| .--.+|+++|++ +||+|+.+.-
T Consensus 8 ~~~~~vlVTGatG----~IG~~l~~~L~~~~~g~~V~~~~r 44 (362)
T 3sxp_A 8 LENQTILITGGAG----FVGSNLAFHFQENHPKAKVVVLDK 44 (362)
T ss_dssp CTTCEEEEETTTS----HHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred cCCCEEEEECCCC----HHHHHHHHHHHhhCCCCeEEEEEC
Confidence 3456676664333 234578999999 9999998864
No 379
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=22.42 E-value=92 Score=25.91 Aligned_cols=33 Identities=15% Similarity=-0.013 Sum_probs=24.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.++++++..+. ---.++|++|+++|++|.++..
T Consensus 31 gk~~lVTGas~---GIG~aia~~la~~G~~V~~~~~ 63 (271)
T 3v2g_A 31 GKTAFVTGGSR---GIGAAIAKRLALEGAAVALTYV 63 (271)
T ss_dssp TCEEEEETTTS---HHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCCc---HHHHHHHHHHHHCCCEEEEEeC
Confidence 45667776554 2457899999999999988743
No 380
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=22.42 E-value=1.1e+02 Score=25.58 Aligned_cols=33 Identities=21% Similarity=0.115 Sum_probs=24.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.++++++..+.| --.++|++|+++|++|.++.-
T Consensus 11 ~k~~lVTGas~g---IG~aia~~la~~G~~V~~~~~ 43 (286)
T 3uve_A 11 GKVAFVTGAARG---QGRSHAVRLAQEGADIIAVDI 43 (286)
T ss_dssp TCEEEEESTTSH---HHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEeCCCch---HHHHHHHHHHHCCCeEEEEec
Confidence 466777766643 457899999999999988743
No 381
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=22.39 E-value=55 Score=27.13 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=26.6
Q ss_pred cEEEEEcCCCc--ccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFMAH--GHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~--gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+|++++.++- |. -+.+|+.|+++|++|+++...
T Consensus 59 ~~v~VlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~~ 94 (246)
T 1jzt_A 59 KHVFVIAGPGNNGGD---GLVCARHLKLFGYNPVVFYPK 94 (246)
T ss_dssp CEEEEEECSSHHHHH---HHHHHHHHHHTTCCEEEECCC
T ss_pred CeEEEEECCCCCHHH---HHHHHHHHHHCCCeEEEEEcC
Confidence 58999987762 22 378899999999999998653
No 382
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=22.30 E-value=1.2e+02 Score=26.45 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=35.2
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+...|+++..|+.|=..-+..|+..|+.+|++|.++..+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 4567889999999999999999999999999999988764
No 383
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=22.28 E-value=1.4e+02 Score=24.10 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=22.7
Q ss_pred CCCCccEEEE-EcCCCc----ccHH-HHH-HHHHHHHhCCCeEEEEeCC
Q 041444 3 SKIPQLHVFF-FPFMAH----GHMI-PIV-DMAKLFATRGVKASVITTP 44 (367)
Q Consensus 3 ~~~~~~~vl~-~p~p~~----gH~~-p~l-~La~~L~~rGh~Vt~~t~~ 44 (367)
+.+.+.+|++ ...|-. +-++ -++ .+++.|.+.||+|+++-..
T Consensus 21 ~~~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~ 69 (218)
T 3rpe_A 21 QSNAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVD 69 (218)
T ss_dssp ---CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred ccccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3344556664 446642 2233 333 4556666789999987654
No 384
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=22.28 E-value=2.1e+02 Score=27.35 Aligned_cols=37 Identities=5% Similarity=-0.086 Sum_probs=33.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEE
Q 041444 286 NSVVYICFGSLANFTSAQLMEIATGLEASGRNFIWVV 322 (367)
Q Consensus 286 ~~vIyvsfGS~~~~~~~~~~~~~~al~~~~~~~lW~~ 322 (367)
..|+|.||++...+.++.++..++-+.+.+..++|..
T Consensus 440 G~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~ 476 (631)
T 3q3e_A 440 EVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHF 476 (631)
T ss_dssp SEEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEE
T ss_pred CeEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 3699999999988999999999999999998888864
No 385
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=22.27 E-value=1.6e+02 Score=21.16 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=22.8
Q ss_pred hCCCCEEEecCCCc--cHHHHHHH-------hCCCeEEEecch
Q 041444 117 DHKPDCLVADIFFP--WATDAAAK-------FGIPRLVFHGTS 150 (367)
Q Consensus 117 ~~~~D~vi~D~~~~--~~~~~A~~-------lgiP~v~~~~~~ 150 (367)
..+||+||.|.... .+..+++. -++|+|+++...
T Consensus 57 ~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 99 (152)
T 3heb_A 57 AGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTD 99 (152)
T ss_dssp TTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCC
T ss_pred cCCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 46899999998664 35555443 256888776554
No 386
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=22.25 E-value=1.7e+02 Score=21.06 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=22.2
Q ss_pred HhhhC-CCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecch
Q 041444 114 LLRDH-KPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGTS 150 (367)
Q Consensus 114 ~l~~~-~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 150 (367)
.+++. ++|+||.|.... .+..+.+.+ ++|+|+++...
T Consensus 42 ~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 86 (151)
T 3kcn_A 42 CIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLTGNQ 86 (151)
T ss_dssp HHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEECGG
T ss_pred HHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEECCC
Confidence 33444 469999997654 355544432 46777765544
No 387
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=22.17 E-value=1.3e+02 Score=23.69 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=26.9
Q ss_pred cEE-EEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHV-FFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~v-l~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.|| +++..+...+-.....+++.|.++|++|.++...
T Consensus 107 ~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G 144 (192)
T 2x5n_A 107 QRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIG 144 (192)
T ss_dssp EEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEES
T ss_pred ceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeC
Confidence 344 4555555566777888999999999998876643
No 388
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=22.14 E-value=66 Score=25.71 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=22.8
Q ss_pred HhhhCCCCEEEecCCCc--cHHHHHHHh-----CCCeEEEecc
Q 041444 114 LLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGT 149 (367)
Q Consensus 114 ~l~~~~~D~vi~D~~~~--~~~~~A~~l-----giP~v~~~~~ 149 (367)
.+...+||+||.|...+ .+..+++.+ ++|+|+++..
T Consensus 42 ~l~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~ 84 (225)
T 3c3w_A 42 RVPAARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSY 84 (225)
T ss_dssp HHHHHCCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEGGGS
T ss_pred HHhhcCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEECC
Confidence 33445799999998664 355555443 4677766544
No 389
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=22.08 E-value=1.8e+02 Score=23.74 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=22.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
++++++..+ | .--.+++++|+++|++|+++.-
T Consensus 8 k~vlVTGas-~--gIG~~ia~~l~~~G~~V~~~~r 39 (263)
T 3ai3_A 8 KVAVITGSS-S--GIGLAIAEGFAKEGAHIVLVAR 39 (263)
T ss_dssp CEEEEESCS-S--HHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCC-c--hHHHHHHHHHHHCCCEEEEEcC
Confidence 445555444 2 2347899999999999988753
No 390
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=22.07 E-value=1.3e+02 Score=23.31 Aligned_cols=38 Identities=34% Similarity=0.471 Sum_probs=24.4
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHHh----CCCeEEEecch
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAKF----GIPRLVFHGTS 150 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~l----giP~v~~~~~~ 150 (367)
+.++..+||+||.|...+ .+..+++.+ ..|+|+++...
T Consensus 52 ~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~lt~~~ 95 (205)
T 1s8n_A 52 ELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFS 95 (205)
T ss_dssp HHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEEEEGG
T ss_pred HHHhhcCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEecCC
Confidence 344556899999998765 355555443 45777766544
No 391
>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*
Probab=22.06 E-value=64 Score=28.03 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 21 MIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 21 ~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+-+++.|.+.|.++|++|.++|..
T Consensus 145 ~~~~~~l~~~l~~~G~~v~ivSas 168 (327)
T 4as2_A 145 FSGQRELYNKLMENGIEVYVISAA 168 (327)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457999999999999999999865
No 392
>2e6x_A TT1592, hypothetical protein TTHA1281; unknown function protein, NPPSFA, national project on protei structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=21.94 E-value=74 Score=19.94 Aligned_cols=18 Identities=17% Similarity=0.567 Sum_probs=14.5
Q ss_pred HHHHhCCCcEEEEEecCC
Q 041444 309 TGLEASGRNFIWVVRKNK 326 (367)
Q Consensus 309 ~al~~~~~~~lW~~~~~~ 326 (367)
+.|+++|+..+|+++.+.
T Consensus 4 d~L~~LG~~LvWRiGk~e 21 (69)
T 2e6x_A 4 DLLDKLGQHLVWRMGRAE 21 (69)
T ss_dssp HHHHHTTCCEEEEEEECS
T ss_pred HHHHHHhceeEEeecccc
Confidence 357788999999998764
No 393
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=21.88 E-value=92 Score=25.37 Aligned_cols=32 Identities=13% Similarity=-0.021 Sum_probs=22.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.++++..+ | .--.+++++|+++|++|+++.-
T Consensus 14 k~vlItGas-g--giG~~la~~l~~~G~~V~~~~r 45 (260)
T 3awd_A 14 RVAIVTGGA-Q--NIGLACVTALAEAGARVIIADL 45 (260)
T ss_dssp CEEEEETTT-S--HHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCC-c--hHHHHHHHHHHHCCCEEEEEeC
Confidence 444454433 2 2347899999999999988764
No 394
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=21.86 E-value=1.2e+02 Score=22.23 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=25.0
Q ss_pred EEEEEcCCCcccHHH-HHHHHHHHHhCCCeEEEEeCC
Q 041444 9 HVFFFPFMAHGHMIP-IVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p-~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+|+++-....|+..- ...|++.|.++|++|+++...
T Consensus 3 ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 39 (148)
T 3f6r_A 3 KVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAA 39 (148)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehh
Confidence 566555556787754 445677777889999988755
No 395
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=21.85 E-value=61 Score=27.08 Aligned_cols=34 Identities=9% Similarity=-0.001 Sum_probs=26.6
Q ss_pred cEEEEEcCCCc--ccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFMAH--GHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~--gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+|++++.+|- |. -+.+|+.|+++|++|+++...
T Consensus 86 ~~vlVlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~~ 121 (259)
T 3d3k_A 86 PTVALLCGPHVKGAQ---GISCGRHLANHDVQVILFLPN 121 (259)
T ss_dssp CEEEEEECSSHHHHH---HHHHHHHHHHTTCEEEEECCB
T ss_pred CeEEEEECCCCCHHH---HHHHHHHHHHCCCeEEEEEec
Confidence 58999987652 22 378899999999999998653
No 396
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A
Probab=21.71 E-value=73 Score=26.13 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=24.0
Q ss_pred ccEEEEEcCCCcccH--HHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHM--IPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~--~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+.-++++..++.+|- .-+..+++.|+++|+.|..+-..
T Consensus 55 ~~p~Vl~~HG~g~~~~~~~~~~~a~~la~~Gy~Vl~~D~r 94 (259)
T 4ao6_A 55 SDRLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGP 94 (259)
T ss_dssp CSEEEEEEC--------CHHHHHHHHHHHTTEEEEEECCC
T ss_pred CCCEEEEeCCCcccccchHHHHHHHHHHHCCCeEEeeccC
Confidence 345677777666663 34788999999999998876543
No 397
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=21.62 E-value=1.1e+02 Score=25.71 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=25.4
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+.++++++..+.| --.++|++|+++|++|.++.-.
T Consensus 8 ~~k~vlVTGas~G---IG~aia~~l~~~G~~V~~~~r~ 42 (285)
T 3sc4_A 8 RGKTMFISGGSRG---IGLAIAKRVAADGANVALVAKS 42 (285)
T ss_dssp TTCEEEEESCSSH---HHHHHHHHHHTTTCEEEEEESC
T ss_pred CCCEEEEECCCCH---HHHHHHHHHHHCCCEEEEEECC
Confidence 3456677766543 4468999999999999887643
No 398
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=21.57 E-value=73 Score=26.73 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
+.+|+|+-.+..|. .+++.|++.||+|+++.
T Consensus 3 ~m~i~iiG~G~~G~-----~~a~~l~~~g~~V~~~~ 33 (295)
T 1yb4_A 3 AMKLGFIGLGIMGS-----PMAINLARAGHQLHVTT 33 (295)
T ss_dssp -CEEEECCCSTTHH-----HHHHHHHHTTCEEEECC
T ss_pred CCEEEEEccCHHHH-----HHHHHHHhCCCEEEEEc
Confidence 35888887666664 46888999999998776
No 399
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=21.51 E-value=1.5e+02 Score=25.27 Aligned_cols=38 Identities=8% Similarity=-0.106 Sum_probs=27.8
Q ss_pred ccEEEEEcCCCcc-c---HHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHG-H---MIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~g-H---~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+.||+++...-.+ | +..-..++++|.++||+|+.+.+.
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~ 54 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPA 54 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5678777653222 2 346789999999999999998754
No 400
>1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A
Probab=21.45 E-value=1e+02 Score=27.27 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=28.2
Q ss_pred cEEEEEcCCCc-ccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 8 LHVFFFPFMAH-GHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 8 ~~vl~~p~p~~-gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
.+|+++.--+- ..+.=++.|++.|.++|++|++..
T Consensus 213 k~Vl~v~DNAG~Eiv~D~L~La~~Ll~~g~kVvl~v 248 (367)
T 1xfi_A 213 KKAVIFVDNSGADIILGILPFARELLRRGAQVVLAA 248 (367)
T ss_dssp CEEEEECCBTTHHHHHTHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEecCCCchhhccHHHHHHHHHHcCCEEEEEE
Confidence 58888887663 455566899999999999999876
No 401
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=21.44 E-value=50 Score=28.17 Aligned_cols=33 Identities=12% Similarity=-0.030 Sum_probs=25.6
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+.+|+++-....| +..|..|+++|++|+++-..
T Consensus 22 ~~~vvIIG~G~aG-----l~aA~~l~~~g~~v~vie~~ 54 (338)
T 3itj_A 22 HNKVTIIGSGPAA-----HTAAIYLARAEIKPILYEGM 54 (338)
T ss_dssp EEEEEEECCSHHH-----HHHHHHHHHTTCCCEEECCS
T ss_pred CCCEEEECcCHHH-----HHHHHHHHHCCCCEEEEecC
Confidence 4678888665434 67899999999999998653
No 402
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=21.43 E-value=55 Score=26.00 Aligned_cols=20 Identities=10% Similarity=-0.061 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 041444 24 IVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t~ 43 (367)
-..++++|+++||+|+.+.-
T Consensus 13 G~~l~~~L~~~g~~V~~~~R 32 (219)
T 3dqp_A 13 GKSLLKSLSTTDYQIYAGAR 32 (219)
T ss_dssp HHHHHHHHTTSSCEEEEEES
T ss_pred HHHHHHHHHHCCCEEEEEEC
Confidence 36899999999999998874
No 403
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=21.40 E-value=40 Score=28.02 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=24.1
Q ss_pred CCCCCCccEEEEEcCCCcccHHHHHHHHHHHHhCCCe-EEEEeC
Q 041444 1 MGSKIPQLHVFFFPFMAHGHMIPIVDMAKLFATRGVK-ASVITT 43 (367)
Q Consensus 1 m~~~~~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~-Vt~~t~ 43 (367)
|....++.+|+|+-.+..| ..+++.|++.||+ |+++..
T Consensus 4 m~~~~~~m~i~iiG~G~mG-----~~~a~~l~~~g~~~v~~~~~ 42 (266)
T 3d1l_A 4 MKRSIEDTPIVLIGAGNLA-----TNLAKALYRKGFRIVQVYSR 42 (266)
T ss_dssp ---CGGGCCEEEECCSHHH-----HHHHHHHHHHTCCEEEEECS
T ss_pred hhcCCCCCeEEEEcCCHHH-----HHHHHHHHHCCCeEEEEEeC
Confidence 4443345689998764444 3568888889999 666643
No 404
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=21.39 E-value=1e+02 Score=22.87 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=23.1
Q ss_pred HHhhhCCCCEEEecCCCc--cHHHHHHH----hCCCeEEEecc
Q 041444 113 QLLRDHKPDCLVADIFFP--WATDAAAK----FGIPRLVFHGT 149 (367)
Q Consensus 113 ~~l~~~~~D~vi~D~~~~--~~~~~A~~----lgiP~v~~~~~ 149 (367)
+.+++.+||+||.|.... .+..+.+. ..+|+|.++..
T Consensus 65 ~~l~~~~~dlvilD~~l~~~~g~~l~~~lr~~~~~~ii~~s~~ 107 (164)
T 3t8y_A 65 EKAIELKPDVITMDIEMPNLNGIEALKLIMKKAPTRVIMVSSL 107 (164)
T ss_dssp HHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHSCCEEEEEESS
T ss_pred HHhccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEecC
Confidence 344556899999998664 34544443 34677666553
No 405
>4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A
Probab=21.38 E-value=62 Score=26.87 Aligned_cols=31 Identities=19% Similarity=0.107 Sum_probs=22.4
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEE
Q 041444 10 VFFFPFMAHGHMIPIVDMAKLFATRGVKASVI 41 (367)
Q Consensus 10 vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~ 41 (367)
|+++ .+..|+-.-+..+++.|+++|++|..+
T Consensus 54 Vlll-HG~~~s~~~~~~la~~La~~Gy~Via~ 84 (281)
T 4fbl_A 54 VLVS-HGFTGSPQSMRFLAEGFARAGYTVATP 84 (281)
T ss_dssp EEEE-CCTTCCGGGGHHHHHHHHHTTCEEEEC
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4443 444566667888999999999987654
No 406
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=21.37 E-value=1.2e+02 Score=25.63 Aligned_cols=38 Identities=11% Similarity=0.287 Sum_probs=28.0
Q ss_pred CccEEEEEcCCCcccHHH--HHHHHHHHHhCC-CeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIP--IVDMAKLFATRG-VKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p--~l~La~~L~~rG-h~Vt~~t~~ 44 (367)
++.|||++.- ..+|-.+ ...|++.|.+.| .+|++....
T Consensus 3 ~~~kvLiv~G-~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~ 43 (281)
T 4e5v_A 3 KPIKTLLITG-QNNHNWQVSHVVLKQILENSGRFDVDFVISP 43 (281)
T ss_dssp CCEEEEEEES-CCSSCHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred CceEEEEEcC-CCCCChHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 5789999943 3488644 357778888888 999998764
No 407
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}
Probab=21.28 E-value=1.9e+02 Score=23.56 Aligned_cols=32 Identities=9% Similarity=-0.045 Sum_probs=22.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
++++++..+ | .--.+++++|+++|++|+++.-
T Consensus 8 k~vlVTGas-~--gIG~~ia~~l~~~G~~V~~~~r 39 (260)
T 2z1n_A 8 KLAVVTAGS-S--GLGFASALELARNGARLLLFSR 39 (260)
T ss_dssp CEEEEETTT-S--HHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCC-c--hHHHHHHHHHHHCCCEEEEEeC
Confidence 445555444 2 2347899999999999988753
No 408
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=21.26 E-value=99 Score=26.61 Aligned_cols=35 Identities=11% Similarity=-0.016 Sum_probs=24.3
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+.+|++.-.. |. --..|+++|+++||+|+.++-..
T Consensus 10 ~~~IlVtGat--G~--iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 10 KGRVLIAGAT--GF--IGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp -CCEEEECTT--SH--HHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCeEEEECCC--cH--HHHHHHHHHHHCCCCEEEEECCC
Confidence 4567666543 32 33678899999999999887543
No 409
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=21.17 E-value=1.1e+02 Score=25.29 Aligned_cols=32 Identities=16% Similarity=0.027 Sum_probs=22.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
++++++..+ | .--.+++++|+++|++|+++.-
T Consensus 9 k~vlVTGas-~--gIG~~ia~~l~~~G~~V~~~~r 40 (264)
T 2dtx_A 9 KVVIVTGAS-M--GIGRAIAERFVDEGSKVIDLSI 40 (264)
T ss_dssp CEEEEESCS-S--HHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCC-C--HHHHHHHHHHHHCCCEEEEEec
Confidence 455555444 2 2357899999999999988753
No 410
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=21.14 E-value=1.3e+02 Score=24.40 Aligned_cols=40 Identities=13% Similarity=0.006 Sum_probs=32.7
Q ss_pred CccEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 6 PQLHVFFFPFM-AHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 6 ~~~~vl~~p~p-~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.+..+.++..+ +.|=..-++.++.++..+|.+|.++++..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 34566666665 99999999999999999999999887653
No 411
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=21.13 E-value=41 Score=28.66 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=24.7
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhC-----C-CeEEEEeC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATR-----G-VKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~r-----G-h~Vt~~t~ 43 (367)
+.+|+|+-.+..|. .+|..|+++ | |+|+++.-
T Consensus 8 ~m~I~iiG~G~mG~-----~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 8 PIKIAVFGLGGVGG-----YYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp CEEEEEECCSHHHH-----HHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCEEEEECcCHHHH-----HHHHHHHhCccccCCCCCEEEEEc
Confidence 36899987666563 668888888 9 99999864
No 412
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=21.12 E-value=66 Score=27.47 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
++.+|+++-....| +..|..|+++|++|+++-..
T Consensus 4 ~~~~vvIIG~G~aG-----l~aA~~l~~~g~~v~lie~~ 37 (335)
T 2zbw_A 4 DHTDVLIVGAGPTG-----LFAGFYVGMRGLSFRFVDPL 37 (335)
T ss_dssp CEEEEEEECCSHHH-----HHHHHHHHHTTCCEEEEESS
T ss_pred CcCcEEEECCCHHH-----HHHHHHHHhCCCCEEEEeCC
Confidence 45678887654333 56778889999999999754
No 413
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=21.08 E-value=92 Score=28.27 Aligned_cols=39 Identities=15% Similarity=0.333 Sum_probs=35.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
..|+++..++.|=..-...||..|+++|+.|.++..+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 468888889999999999999999999999999987754
No 414
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=21.03 E-value=88 Score=24.23 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=21.7
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 19 GHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 19 gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
|.-.-...+|.++.++|+.|..+|+.
T Consensus 88 g~n~~~ie~A~~ake~G~~vIaITs~ 113 (170)
T 3jx9_A 88 TERSDLLASLARYDAWHTPYSIITLG 113 (170)
T ss_dssp SCCHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEeCc
Confidence 34444889999999999999999983
No 415
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=21.02 E-value=1.1e+02 Score=25.08 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=23.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVIT 42 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t 42 (367)
.++++++..+.| --.+++++|+++|++|.++.
T Consensus 6 ~k~vlVTGas~g---IG~aia~~l~~~G~~V~~~~ 37 (257)
T 3imf_A 6 EKVVIITGGSSG---MGKGMATRFAKEGARVVITG 37 (257)
T ss_dssp TCEEEETTTTSH---HHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCCH---HHHHHHHHHHHCCCEEEEEe
Confidence 356666665542 45789999999999998765
No 416
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=20.98 E-value=84 Score=27.13 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=24.6
Q ss_pred HHHHhhhCCCCEEEecCCCccHHHHHHHhCCCeEEEecc
Q 041444 111 LEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGT 149 (367)
Q Consensus 111 l~~~l~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~ 149 (367)
++.++ ..+||+||..........--++.|+|++.+...
T Consensus 109 ~E~i~-al~PDLIi~~~~~~~~~~~L~~~gipvv~~~~~ 146 (335)
T 4hn9_A 109 TEACV-AATPDVVFLPMKLKKTADTLESLGIKAVVVNPE 146 (335)
T ss_dssp HHHHH-HTCCSEEEEEGGGHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHH-hcCCCEEEEeCcchhHHHHHHHcCCCEEEEcCC
Confidence 44444 368999998654222334445779999998643
No 417
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=20.93 E-value=2e+02 Score=22.23 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=27.9
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+.||+++-.++.. ..=+......|.+.|++|++++...
T Consensus 5 ~kkv~ill~~g~~-~~e~~~~~~~l~~ag~~v~~~s~~~ 42 (190)
T 4e08_A 5 SKSALVILAPGAE-EMEFIIAADVLRRAGIKVTVAGLNG 42 (190)
T ss_dssp CCEEEEEECTTCC-HHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CcEEEEEECCCch-HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4578887777754 3444556678888999999999764
No 418
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=20.90 E-value=1.2e+02 Score=26.14 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=24.8
Q ss_pred hhhCCCCEEEecCCCc--cHHHHHHHh-------CCCeEEEecch
Q 041444 115 LRDHKPDCLVADIFFP--WATDAAAKF-------GIPRLVFHGTS 150 (367)
Q Consensus 115 l~~~~~D~vi~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 150 (367)
+...+||+||.|..++ .+..+.+.+ ++|+|+++...
T Consensus 59 ~~~~~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ii~~s~~~ 103 (358)
T 3bre_A 59 ANQIKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKE 103 (358)
T ss_dssp HHHHCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCEEEEESSC
T ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCcEEEEeCCC
Confidence 3445799999998775 366666654 36788776654
No 419
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.86 E-value=90 Score=24.99 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=24.4
Q ss_pred CCCEEE-ecCCCc-cHHHHHHHhCCCeEEEecch
Q 041444 119 KPDCLV-ADIFFP-WATDAAAKFGIPRLVFHGTS 150 (367)
Q Consensus 119 ~~D~vi-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 150 (367)
-||++| .|+-.- -+..-|.++|||.|.++-+.
T Consensus 111 ~Pdllvv~Dp~~d~~ai~EA~~l~IP~Ial~DTn 144 (202)
T 3j20_B 111 EPDVLIVTDPRADHQAMREAVEIGIPIVALVDTE 144 (202)
T ss_dssp CCSEEEESCTTTSHHHHHHHHHHTCCEEEEECTT
T ss_pred CCCeEEEeCCccchHHHHHHHHcCCCEEEEEcCC
Confidence 588754 787654 46678999999999987553
No 420
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=20.81 E-value=1.3e+02 Score=24.71 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=27.7
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
..|+++++..+.| --.++|++|++.|.+|.+.--
T Consensus 10 ~GK~alVTGas~G---IG~aia~~la~~Ga~Vv~~~~ 43 (242)
T 4b79_A 10 AGQQVLVTGGSSG---IGAAIAMQFAELGAEVVALGL 43 (242)
T ss_dssp TTCEEEEETTTSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEeCCCCH---HHHHHHHHHHHCCCEEEEEeC
Confidence 4688899888765 458899999999999987653
No 421
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=20.78 E-value=84 Score=25.90 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=30.3
Q ss_pred ccEEEEE--cCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 7 QLHVFFF--PFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 7 ~~~vl~~--p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
+.+++.+ +-+|.|=..-...||..|+ +|++|.++-.+..
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 4455444 3556789999999999999 9999999877654
No 422
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=20.74 E-value=1.8e+02 Score=24.93 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=32.3
Q ss_pred cEEEEE-cCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 8 LHVFFF-PFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 8 ~~vl~~-p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
.+|+|+ .-+|.|=..-...||..|+++|++|.++..+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 355544 46778999999999999999999999999886
No 423
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=20.73 E-value=1.1e+02 Score=24.67 Aligned_cols=32 Identities=9% Similarity=-0.089 Sum_probs=22.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
+.++++..+. ---.+++++|+++|++|+++.-
T Consensus 4 k~vlITGas~---gIG~~~a~~l~~~G~~V~~~~r 35 (236)
T 1ooe_A 4 GKVIVYGGKG---ALGSAILEFFKKNGYTVLNIDL 35 (236)
T ss_dssp EEEEEETTTS---HHHHHHHHHHHHTTEEEEEEES
T ss_pred CEEEEECCCc---HHHHHHHHHHHHCCCEEEEEec
Confidence 4455554442 2457899999999999988753
No 424
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=20.69 E-value=1.7e+02 Score=24.12 Aligned_cols=38 Identities=8% Similarity=0.079 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCc--ccHHHHHH-HHHHHHhCCCeEEEEeC
Q 041444 6 PQLHVFFFPFMAH--GHMIPIVD-MAKLFATRGVKASVITT 43 (367)
Q Consensus 6 ~~~~vl~~p~p~~--gH~~p~l~-La~~L~~rGh~Vt~~t~ 43 (367)
.+.+|+++...-. |...-+.. +++.|.+.|++|+++-.
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL 73 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDP 73 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEh
Confidence 3567776654433 65555544 56667778999988754
No 425
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=20.67 E-value=98 Score=22.41 Aligned_cols=26 Identities=15% Similarity=0.022 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHHHHhCCCeE-EEEeCC
Q 041444 19 GHMIPIVDMAKLFATRGVKA-SVITTP 44 (367)
Q Consensus 19 gH~~p~l~La~~L~~rGh~V-t~~t~~ 44 (367)
......+.++..+++.||+| +++-..
T Consensus 15 ~~~~~al~~a~a~~~~g~~v~~vff~~ 41 (130)
T 2hy5_A 15 QASDSAYQFAKAALEKGHEIFRVFFYH 41 (130)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred HHHHHHHHHHHHHHhcCCeeCEEEEec
Confidence 34567789999999999999 877654
No 426
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=20.64 E-value=80 Score=26.81 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=27.1
Q ss_pred CCCCCC-ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 1 MGSKIP-QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 1 m~~~~~-~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
|...+. +.+|+++-....| +..|..|+++|++|+++-..
T Consensus 1 m~~~~~~~~dvvIIG~G~aG-----l~aA~~l~~~g~~v~lie~~ 40 (325)
T 2q7v_A 1 MTAPTAHDYDVVIIGGGPAG-----LTAAIYTGRAQLSTLILEKG 40 (325)
T ss_dssp -CCCCCEEEEEEEECCSHHH-----HHHHHHHHHTTCCEEEEESS
T ss_pred CCCCccccCCEEEECCCHHH-----HHHHHHHHHcCCcEEEEeCC
Confidence 544332 4578888765444 66788899999999998754
No 427
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=20.63 E-value=63 Score=28.42 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=26.5
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
+.+|+|+-.+..| ..+|..|+++||+|+++...
T Consensus 29 ~mkI~VIGaG~mG-----~alA~~La~~G~~V~l~~r~ 61 (356)
T 3k96_A 29 KHPIAILGAGSWG-----TALALVLARKGQKVRLWSYE 61 (356)
T ss_dssp CSCEEEECCSHHH-----HHHHHHHHTTTCCEEEECSC
T ss_pred CCeEEEECccHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 4689998876655 46889999999999998754
No 428
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Probab=20.43 E-value=1.9e+02 Score=21.96 Aligned_cols=34 Identities=12% Similarity=-0.004 Sum_probs=24.0
Q ss_pred EEEEcCCCcccHHHHHH--HHHHHHhCCCeEEEEeC
Q 041444 10 VFFFPFMAHGHMIPIVD--MAKLFATRGVKASVITT 43 (367)
Q Consensus 10 vl~~p~p~~gH~~p~l~--La~~L~~rGh~Vt~~t~ 43 (367)
++++-.+..|+...+.. +++.|+++|+.|..+..
T Consensus 34 ~vv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 69 (210)
T 1imj_A 34 SVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDL 69 (210)
T ss_dssp EEEECCCTTCCHHHHHHHTHHHHHHHTTCEEEEECC
T ss_pred eEEEECCCCCccceeecchhHHHHHHCCCeEEEecC
Confidence 44444445577777777 69999999999877644
No 429
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=20.40 E-value=1.5e+02 Score=22.95 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=25.5
Q ss_pred ccEEEEEcCCCcccHHHHH-HHHHHHHhCCCeEEEEeCC
Q 041444 7 QLHVFFFPFMAHGHMIPIV-DMAKLFATRGVKASVITTP 44 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l-~La~~L~~rGh~Vt~~t~~ 44 (367)
+.+|+++-....|+..-+. .+++.|.+.|++|+++...
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~ 43 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVP 43 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCC
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 3467766555578766544 4566677789999887654
No 430
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=20.38 E-value=1.6e+02 Score=23.20 Aligned_cols=39 Identities=8% Similarity=0.164 Sum_probs=26.3
Q ss_pred CccEEEEEcCCCcccHHHHH-HHHHHHHhCCCeEEEEeCC
Q 041444 6 PQLHVFFFPFMAHGHMIPIV-DMAKLFATRGVKASVITTP 44 (367)
Q Consensus 6 ~~~~vl~~p~p~~gH~~p~l-~La~~L~~rGh~Vt~~t~~ 44 (367)
++.+|+++-....|+..-+. .+++.|.+.|++|.++...
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~ 44 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVR 44 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 44577766555578776544 4556677789999887754
No 431
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=20.34 E-value=64 Score=26.93 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 041444 24 IVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~t~ 43 (367)
-.+|+++|+++||+|+.+.-
T Consensus 25 G~~l~~~L~~~g~~V~~~~r 44 (292)
T 1vl0_A 25 GREIQKQLKGKNVEVIPTDV 44 (292)
T ss_dssp HHHHHHHHTTSSEEEEEECT
T ss_pred HHHHHHHHHhCCCeEEeccC
Confidence 46789999999999998763
No 432
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=20.31 E-value=1.3e+02 Score=24.09 Aligned_cols=36 Identities=11% Similarity=0.144 Sum_probs=29.6
Q ss_pred EEEEc-CCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 10 VFFFP-FMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 10 vl~~p-~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
|+|.. -+|.|=..-...||..|+++|++|.++-.+.
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 5 ISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 44443 4577999999999999999999999988764
No 433
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=20.31 E-value=1.4e+02 Score=23.86 Aligned_cols=48 Identities=15% Similarity=-0.001 Sum_probs=35.3
Q ss_pred HHHhhhhcCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q 041444 274 LECLKWLNSKQPNSVVYICFGSLANFTSAQLMEIATGLEASGRNFIWV 321 (367)
Q Consensus 274 ~~l~~wLd~~~~~~vIyvsfGS~~~~~~~~~~~~~~al~~~~~~~lW~ 321 (367)
+-+.+|+.+.....++||..+|...-..+.++.+.++|+++|..+.+.
T Consensus 16 ~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~ 63 (206)
T 3l4e_A 16 PLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEEL 63 (206)
T ss_dssp HHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 345667654445679999998765444577888999999999987664
No 434
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=20.25 E-value=1e+02 Score=25.74 Aligned_cols=32 Identities=13% Similarity=0.064 Sum_probs=23.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 9 HVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 9 ~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
++++++..+.| --.++|++|+++|++|+++.-
T Consensus 26 k~~lVTGas~G---IG~~ia~~la~~G~~V~~~~r 57 (281)
T 3v2h_A 26 KTAVITGSTSG---IGLAIARTLAKAGANIVLNGF 57 (281)
T ss_dssp CEEEEETCSSH---HHHHHHHHHHHTTCEEEEECC
T ss_pred CEEEEeCCCcH---HHHHHHHHHHHCCCEEEEEeC
Confidence 56666665543 457899999999999987653
No 435
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=20.10 E-value=65 Score=25.64 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=23.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTP 44 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~ 44 (367)
.+|++.-. .|. --..|+++|+++||+|+.++-.
T Consensus 5 ~~ilItGa--tG~--iG~~l~~~L~~~g~~V~~~~r~ 37 (227)
T 3dhn_A 5 KKIVLIGA--SGF--VGSALLNEALNRGFEVTAVVRH 37 (227)
T ss_dssp CEEEEETC--CHH--HHHHHHHHHHTTTCEEEEECSC
T ss_pred CEEEEEcC--Cch--HHHHHHHHHHHCCCEEEEEEcC
Confidence 56666642 232 3468899999999999988643
No 436
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=20.08 E-value=1.7e+02 Score=25.23 Aligned_cols=38 Identities=11% Similarity=-0.030 Sum_probs=32.0
Q ss_pred EEE-EEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 041444 9 HVF-FFPFMAHGHMIPIVDMAKLFATRGVKASVITTPAN 46 (367)
Q Consensus 9 ~vl-~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~ 46 (367)
+|+ +..-+|.|=..-...||..|+++|++|-++..+..
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 444 44567789999999999999999999999998864
No 437
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=20.07 E-value=2.9e+02 Score=30.13 Aligned_cols=43 Identities=9% Similarity=0.043 Sum_probs=36.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCcchh
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPANAPYV 50 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~~~~~~ 50 (367)
.-+++..-|+.|-..-.+++|..++.+|..|.|++.+.....+
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql 775 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI 775 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHH
Confidence 3577888999999999999999999999999999988655433
No 438
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=20.06 E-value=2.4e+02 Score=21.81 Aligned_cols=38 Identities=13% Similarity=0.029 Sum_probs=28.9
Q ss_pred ccEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 041444 7 QLHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITTPA 45 (367)
Q Consensus 7 ~~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~~~ 45 (367)
+.+|+|+-+++.. ..-+......|.+.|++|++++...
T Consensus 23 ~~kV~ill~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~~ 60 (193)
T 1oi4_A 23 SKKIAVLITDEFE-DSEFTSPADEFRKAGHEVITIEKQA 60 (193)
T ss_dssp CCEEEEECCTTBC-THHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCEEEEEECCCCC-HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 5689999888755 3445566777888899999998764
No 439
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=20.06 E-value=1.7e+02 Score=23.76 Aligned_cols=33 Identities=15% Similarity=-0.059 Sum_probs=23.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 041444 8 LHVFFFPFMAHGHMIPIVDMAKLFATRGVKASVITT 43 (367)
Q Consensus 8 ~~vl~~p~p~~gH~~p~l~La~~L~~rGh~Vt~~t~ 43 (367)
.++++++..+.| --.+++++|+++|++|.++.-
T Consensus 7 ~k~vlVTGas~G---IG~aia~~l~~~G~~V~~~~r 39 (252)
T 3h7a_A 7 NATVAVIGAGDY---IGAEIAKKFAAEGFTVFAGRR 39 (252)
T ss_dssp SCEEEEECCSSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCch---HHHHHHHHHHHCCCEEEEEeC
Confidence 455666655532 457899999999999987753
Done!