BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041449
         (204 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O31609|YJBK_BACSU Uncharacterized protein YjbK OS=Bacillus subtilis (strain 168)
           GN=yjbK PE=1 SV=1
          Length = 190

 Score = 39.7 bits (91), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 75/186 (40%), Gaps = 22/186 (11%)

Query: 1   MEVEVKLRLKDSTAHQKLSNILSPYH---KQTLFQENIFFDDKDSKLSSNAAVLRLRFYN 57
           M  E+++  K+    Q+  NI S      K    Q+N +FD     L    A LR+R   
Sbjct: 1   MSQEIEIEFKNMLTKQEFKNIASALQLTEKDFTDQKNHYFDTDSFALKQKHAALRIR--R 58

Query: 58  LNSHCILSLKAKPTISDGISRVQELEEPVPLA--TATESVAKPQLLG-QIDSKIMKMVKQ 114
            N   +L+LK +P     +   Q+L E   LA  +  E   K QL   QID+        
Sbjct: 59  KNGKYVLTLK-EPADVGLLETHQQLSEVSDLAGFSVPEGPVKDQLHKLQIDT-------- 109

Query: 115 EYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGL 174
                D     G     RA  E +   + LD + Y     YEIE E+ +    R+  E L
Sbjct: 110 -----DAIQYFGSLATNRAEKETEKGLIVLDHSRYLNKEDYEIEFEAADWHEGRQAFEKL 164

Query: 175 LEENGI 180
           L++  I
Sbjct: 165 LQQFSI 170


>sp|P75748|YBGO_ECOLI Uncharacterized protein YbgO OS=Escherichia coli (strain K12)
           GN=ybgO PE=4 SV=2
          Length = 353

 Score = 31.6 bits (70), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 134 VYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEG------LLEENGIEYDFSDF 187
            +  K  K + D+ T GF  S     E    E D+ L+ G      LL+EN   Y F+ +
Sbjct: 249 TFSIKTTKSQNDQCTDGFKVSSSFYTEETLVEEDKALLIGNGLKLRLLDENASPYTFNKY 308

Query: 188 SKFAVFRSGKL 198
           +++A F S  L
Sbjct: 309 AEYADFTSDML 319


>sp|B0KUP7|TPMT_PSEPG Thiopurine S-methyltransferase OS=Pseudomonas putida (strain GB-1)
           GN=tpm PE=3 SV=1
          Length = 216

 Score = 31.6 bits (70), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 152 GTSYEIECESLEPERDRKLIEGLLEENGIEYDFSDFSKFAVFRSGKLPGWVKN 204
           G  Y +    L  E  R+ +EG   E+G++ D      F V+RSG++  W  +
Sbjct: 57  GQGYRV----LGVELSRQAVEGFFREHGLDADVLQHGAFEVWRSGEIELWCGD 105


>sp|Q12UG7|RADA_METBU DNA repair and recombination protein RadA OS=Methanococcoides
           burtonii (strain DSM 6242) GN=radA PE=3 SV=1
          Length = 325

 Score = 31.2 bits (69), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 102 GQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECE- 160
           G I+++ +  +  E+G G   +      NV+   E  GL           G+   I+ E 
Sbjct: 95  GGIETQSITEMYGEFGSGKTQIAHQLAVNVQLPPEQGGLG----------GSVIMIDTEN 144

Query: 161 SLEPERDRKLIEGLLEENGIEYDFSDFSK 189
           +  PER  ++++G+ +++GIEYD  +F K
Sbjct: 145 TFRPERIAQMVKGISDKHGIEYDPEEFLK 173


>sp|A3LRM6|SNU71_PICST U1 small nuclear ribonucleoprotein component SNU71
           OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
           6054 / NBRC 10063 / NRRL Y-11545) GN=SNU71 PE=3 SV=2
          Length = 579

 Score = 30.8 bits (68), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 11/63 (17%)

Query: 67  KAKPTISDGISRVQELEEPVPLATATESVAKPQLL-----GQIDSKIMKMVKQEYGVGDE 121
           KAK T+       ++ E+ VP+A   ES  +P  +      ++ SKI+++V++  G+ DE
Sbjct: 477 KAKNTLE------KDTEDAVPVADNAESETEPSRIEVDQTSKLQSKIVELVEEYLGIVDE 530

Query: 122 FVC 124
           F+ 
Sbjct: 531 FLV 533


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.135    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,424,307
Number of Sequences: 539616
Number of extensions: 3006716
Number of successful extensions: 7633
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 7632
Number of HSP's gapped (non-prelim): 15
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)