Query 041449
Match_columns 204
No_of_seqs 153 out of 838
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 07:12:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07762 CYTH-like_Pase_1 Uncha 100.0 3.7E-39 8.1E-44 254.3 21.0 179 1-194 1-180 (180)
2 cd07756 CYTH-like_Pase_CHAD Un 100.0 8.3E-37 1.8E-41 243.9 16.9 181 2-195 1-196 (197)
3 COG4116 Uncharacterized protei 100.0 3.4E-37 7.4E-42 234.4 9.9 182 1-196 5-187 (193)
4 COG3025 Uncharacterized conser 100.0 8.1E-37 1.7E-41 262.0 9.5 182 1-195 3-197 (432)
5 cd07374 CYTH-like_Pase CYTH-li 99.9 8.4E-27 1.8E-31 182.9 13.8 147 2-166 1-160 (174)
6 cd07890 CYTH-like_AC_IV-like A 99.9 7.3E-25 1.6E-29 171.3 19.5 159 2-183 1-159 (169)
7 PF01928 CYTH: CYTH domain; I 99.9 1.4E-25 3.1E-30 177.1 14.3 176 1-195 2-180 (185)
8 cd07758 ThTPase Thiamine Triph 99.9 4.6E-24 1E-28 170.5 19.3 166 1-182 1-179 (196)
9 TIGR00318 cyaB adenylyl cyclas 99.9 8.9E-23 1.9E-27 160.3 19.9 159 1-184 2-163 (174)
10 COG1437 CyaB Adenylate cyclase 99.9 9.9E-21 2.2E-25 146.4 18.5 158 1-182 2-162 (178)
11 cd07750 PolyPPase_VTC_like Pol 99.6 3E-14 6.5E-19 115.4 15.4 179 3-190 2-213 (214)
12 cd07761 CYTH-like_CthTTM-like 99.3 1.2E-10 2.6E-15 89.0 13.1 117 1-165 1-118 (146)
13 cd07891 CYTH-like_CthTTM-like_ 99.1 1.5E-09 3.2E-14 83.1 12.0 119 1-164 1-119 (148)
14 cd07751 PolyPPase_VTC4_like Po 99.0 2.4E-08 5.2E-13 84.5 16.0 193 3-200 8-281 (290)
15 COG2954 Uncharacterized protei 98.9 2E-08 4.4E-13 74.7 9.9 114 1-159 3-118 (156)
16 PLN02318 phosphoribulokinase/u 98.7 8.3E-07 1.8E-11 81.1 14.5 125 29-190 276-405 (656)
17 PF09359 VTC: VTC domain; Int 98.6 2.4E-06 5.2E-11 72.0 14.5 185 3-195 3-280 (283)
18 cd07892 PolyPPase_VTC2-3_like 98.1 0.00026 5.5E-09 60.2 15.6 186 5-199 10-288 (303)
19 COG2164 Uncharacterized conser 50.3 13 0.00028 26.6 2.0 30 11-40 23-52 (126)
20 PF02940 mRNA_triPase: mRNA ca 47.6 45 0.00098 26.7 5.1 31 10-40 67-109 (215)
21 COG5036 SPX domain-containing 45.5 56 0.0012 29.3 5.5 27 31-57 234-267 (509)
22 cd07470 CYTH-like_mRNA_RTPase 44.5 85 0.0018 25.8 6.3 37 129-165 173-214 (243)
23 PF04667 Endosulfine: cAMP-reg 37.9 11 0.00025 25.9 0.1 19 32-50 33-51 (86)
24 KOG2435 Uncharacterized conser 24.3 81 0.0018 26.5 2.9 23 48-72 203-225 (323)
No 1
>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup
Probab=100.00 E-value=3.7e-39 Score=254.32 Aligned_cols=179 Identities=27% Similarity=0.335 Sum_probs=157.8
Q ss_pred CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449 1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ 80 (204)
Q Consensus 1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~ 80 (204)
+|||+|+ +++++.+.++.+++.. .....|+|+|||||+++|++++++||||.. |++|+||+|+|+. +.|.
T Consensus 1 iEiE~K~-~l~~~~~~~l~~~~~~--~~~~~q~n~Yfdtp~~~l~~~~~aLRiR~~--~~~~~~TlK~~~~-----~~r~ 70 (180)
T cd07762 1 LEIEFKN-LLTKEEYEQLKNAFDL--KDFFKQTNYYFDTPDFALKKKHSALRIREK--EGKAELTLKVPQE-----VGLL 70 (180)
T ss_pred CcEEEEe-cCCHHHHHHHHHhccc--CCcEEEEEEEEeCCCHHHHhCCcEEEEEee--CCeEEEEEeeCCC-----CCCc
Confidence 6999999 8999999999988544 456889999999999999999999999998 6799999999874 2356
Q ss_pred EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCC-ceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEE
Q 041449 81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGD-EFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIEC 159 (204)
Q Consensus 81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~-~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiEl 159 (204)
|||.+|+.++++.++.. ..+| ++.+..++..+|+.+ .+.++++++|.|+++.+++++||||++.|.+..++|||+
T Consensus 71 E~e~~l~~~~~~~~~~~-~~~~---~~~~~~~L~~lg~~~~~l~~~~~~~t~R~~~~~~~~~l~LD~~~~lg~~d~ElE~ 146 (180)
T cd07762 71 ETNQPLTLEEAEKLIKG-GTLP---EGEILDKLKELGIDPSELKLFGSLTTIRAEIPYEGGLLVLDHSLYLGITDYELEY 146 (180)
T ss_pred EEeecCCHHHHHHHhcc-ccCC---chHHHHHHHHhCCCcccEEEEeeEEEEEEEEEeCCEEEEEeccEeCCCeeEEEEE
Confidence 99999998888888875 3343 456778889999864 599999999999999999999999999999877899999
Q ss_pred EecCcchHHHHHHHHHHhCCCccccCCCCHHHHHH
Q 041449 160 ESLEPERDRKLIEGLLEENGIEYDFSDFSKFAVFR 194 (204)
Q Consensus 160 El~~g~~~~~~~~~~l~~~~i~~~~~~~SK~~R~~ 194 (204)
|+.+++.+...|.++++++||+++++ .||++||+
T Consensus 147 e~~~~~~~~~~~~~ll~~~gi~~~~~-~sKi~R~~ 180 (180)
T cd07762 147 EVDDYEAGKKAFLELLKQYNIPYRPA-KNKIARFL 180 (180)
T ss_pred EeCCHHHHHHHHHHHHHHcCCCcccC-cchhheeC
Confidence 99998888999999999999999887 79999985
No 2
>cd07756 CYTH-like_Pase_CHAD Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosp
Probab=100.00 E-value=8.3e-37 Score=243.91 Aligned_cols=181 Identities=23% Similarity=0.227 Sum_probs=140.2
Q ss_pred eeEeeccCCCHHHHHHHHHhhCC--CC---CcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCc
Q 041449 2 EVEVKLRLKDSTAHQKLSNILSP--YH---KQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGI 76 (204)
Q Consensus 2 EiElK~~~~~~~~~~~l~~~l~~--~~---~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl 76 (204)
|||+|| .++++.+..|.++... .. ....+|+|+||||||++|++++++||||+. |++|+||+|+++...+|+
T Consensus 1 EiElKl-~~~~~~~~~l~~~~~l~~~~~~~~~~~~l~~~YfDTpd~~L~~~~~aLRiR~~--~~~~~~TlK~~~~~~~g~ 77 (197)
T cd07756 1 EIELKL-LLPPEDLEALAAHPLLAALAAGRAQTRRLHNTYFDTPDLALRRAGIALRVRRE--GGQWVQTLKTAGSVVGGL 77 (197)
T ss_pred CeeEee-cCCHHHHHHHHhchhhhccccCCcceeeeeeeeeeCcChHHHhCCCEEEEEee--CCeEEEEEeeCCcCCCCc
Confidence 899999 9999999999887332 11 246789999999999999999999999998 578999999998777888
Q ss_pred eeeeEeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCC----eEEEecceecCCc
Q 041449 77 SRVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKG----LKLELDETTYGFG 152 (204)
Q Consensus 77 ~~~~E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~----~el~lD~~~~~~~ 152 (204)
+.|.|||.+|+++.++..+. ..+|. ......+ +....|.|++++.+.|..|.+.. +|||+|.|.+.++
T Consensus 78 ~~R~E~e~~l~~~~~~l~~~--~~~~~--~~~~~~l----~~~~~L~pvf~t~~~R~~~~l~~~~~~iEvalD~G~i~a~ 149 (197)
T cd07756 78 HQRPEWEVPLPGPAPDLDLA--SILPD--GELLEAL----AALAALVPLFTTDFERTVWLLRLGGSEIEVALDQGEIRAG 149 (197)
T ss_pred ccceeEcccCCCCCcCcchh--hcCCc--ccCHhhh----hccCCceEEEEEEEEEEEEEEcCCCcEEEEEEeeeEEEeC
Confidence 88899999999876543221 11221 1122222 11124899999999999998743 8999999987655
Q ss_pred c----eeEEEEEecCcc--hHHHHHHHHHHhCCCccccCCCCHHHHHHh
Q 041449 153 T----SYEIECESLEPE--RDRKLIEGLLEENGIEYDFSDFSKFAVFRS 195 (204)
Q Consensus 153 ~----~~EiElEl~~g~--~~~~~~~~~l~~~~i~~~~~~~SK~~R~~~ 195 (204)
. .||||+|+++|+ +++.++..++... +++++..|||+|+|.
T Consensus 150 ~~~~~i~EiElELk~G~~~~L~~la~~l~~~~--~l~~~~~SKa~rG~~ 196 (197)
T cd07756 150 DRSEPICEIELELKSGDPAALFALARRLAERL--PLRLSNRSKAERGYR 196 (197)
T ss_pred CCccceEeEEEEecCCCHHHHHHHHHHHHHhC--CccCCCcCHHHhccc
Confidence 4 499999999985 5577778888766 566777999999874
No 3
>COG4116 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=3.4e-37 Score=234.41 Aligned_cols=182 Identities=24% Similarity=0.314 Sum_probs=162.7
Q ss_pred CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449 1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ 80 (204)
Q Consensus 1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~ 80 (204)
+|||+|- +++.+.|.+|...+...... ..|+|+||||||+.|+++++|||||.. .+++++|||.|..+ |+ +
T Consensus 5 lEIE~Kt-lltk~ey~rL~~~~~~~~~d-~~QtN~YiDT~dF~LKek~~ALRIR~~--e~~~elTLK~P~~v--Gl--l- 75 (193)
T COG4116 5 LEIEFKT-LLTKEEYNRLISQFTIVEPD-VLQTNHYIDTDDFKLKEKKSALRIRTK--ENQYELTLKVPAKV--GL--L- 75 (193)
T ss_pred hhhHHHH-HhhHHHHHHHHHHhccCCCc-ceeeeeeecCcchhhhhhhcceeEEee--cceEEEEecCchhc--Cc--h-
Confidence 5999998 99999999999998653332 889999999999999999999999999 57999999999987 86 4
Q ss_pred EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCc-eEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEE
Q 041449 81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDE-FVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIEC 159 (204)
Q Consensus 81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~-l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiEl 159 (204)
|++.+++.+++..++.. .++| ...+..++..+||.+. +..++++.|.|.+..++.|.+|||.+.|.+..+||||+
T Consensus 76 Eynq~Ls~e~a~~~l~~-~~~P---~g~v~d~l~~~gI~~~~l~~~GsLtT~R~E~~~~~Gll~LD~s~Y~~~~DYElE~ 151 (193)
T COG4116 76 EYNQILSLEEAKLALIS-ANLP---EGEVLDILEKLGIKDSALQVFGSLTTIRAEKKYEIGLLVLDKSRYLGIEDYELEF 151 (193)
T ss_pred hhcccccHHHHHHHhhc-cCCC---ccHHHHHHHHcCCCHHHHHhhhhhhhhhhhhhccCceEEEchhhhCCccceeEEE
Confidence 99999999888888874 5675 4556667788899765 99999999999999999999999999999999999999
Q ss_pred EecCcchHHHHHHHHHHhCCCccccCCCCHHHHHHhc
Q 041449 160 ESLEPERDRKLIEGLLEENGIEYDFSDFSKFAVFRSG 196 (204)
Q Consensus 160 El~~g~~~~~~~~~~l~~~~i~~~~~~~SK~~R~~~~ 196 (204)
|+.+.+.+...|..+|+.+.|+.++. .||.+||+.-
T Consensus 152 Ev~d~~qGk~~F~~~L~e~~I~~~~a-~nKv~RF~~~ 187 (193)
T COG4116 152 EVSDYEQGKQDFQKLLKEFSIEQHPA-KNKVQRFFKK 187 (193)
T ss_pred EeccHHHhHHHHHHHHHHcCcccccc-HHHHHHHHHH
Confidence 99999999999999999999999985 6999999863
No 4
>COG3025 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.1e-37 Score=261.98 Aligned_cols=182 Identities=23% Similarity=0.212 Sum_probs=138.5
Q ss_pred CeeEeeccCCCHHHHHHHHHhhCCC---CCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCce
Q 041449 1 MEVEVKLRLKDSTAHQKLSNILSPY---HKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGIS 77 (204)
Q Consensus 1 ~EiElK~~~~~~~~~~~l~~~l~~~---~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~ 77 (204)
||||+|| +++++....+.+.+... ...+..+.|+||||||+.|++++|+||||+. +++|+||+|+.|.+.+|+|
T Consensus 3 ~EIELKf-~Vs~~aa~~l~~~L~~~~~~~~~~~~L~n~YyDTpd~~L~~~~~gLRIR~~--~~~y~~TlKtaG~v~gGlH 79 (432)
T COG3025 3 QEIELKF-LVSPEAALALLSKLADYTISEHTPQQLANIYYDTPDNWLRRHDMGLRIRRE--GGQYEQTLKTAGGVVGGLH 79 (432)
T ss_pred cchhhhe-ecCHHHHHHHHHHhhhcccCCcchhhHhhhhcCCchHHHHhCCceEEEecc--CCeEEEEEEecCccccccc
Confidence 6999999 99999988888886653 3456778999999999999999999999999 6789999999999999999
Q ss_pred eeeEeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEE--EEEEeCC--eEEEecceecCCcc
Q 041449 78 RVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVR--AVYEWKG--LKLELDETTYGFGT 153 (204)
Q Consensus 78 ~~~E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R--~~~~~~~--~el~lD~~~~~~~~ 153 (204)
+|+|||++++++.++. .. + |...+..-.........|.|+++.+..| |.+.+++ +||+||.|.+.+|+
T Consensus 80 ~RpEyn~~L~~~~~~~-~~----~---p~~~~p~~~~~~~~~~~L~PlFstdf~R~~w~v~~g~s~iEvALD~G~v~Age 151 (432)
T COG3025 80 QRPEYNVPLPEDTLDL-AE----L---PRDRWPAGIFPLDLGSELQPLFSTDFKREKWLVALGGSVIEVALDQGKVKAGE 151 (432)
T ss_pred cCccccccCCCCCcch-hh----C---hhhhcccccCCcccccccccceeeeeeeeeeeeecCCeEEEEEecccccccCc
Confidence 9999999999987652 11 2 1222211110111133488876665544 5555654 89999999988876
Q ss_pred ----eeEEEEEecCcc--hHHHHHHHHHHhCCCccccCCCCHHHHHHh
Q 041449 154 ----SYEIECESLEPE--RDRKLIEGLLEENGIEYDFSDFSKFAVFRS 195 (204)
Q Consensus 154 ----~~EiElEl~~g~--~~~~~~~~~l~~~~i~~~~~~~SK~~R~~~ 195 (204)
.||||+|+|+|. ++..+...++... +++.+..|||+|+|.
T Consensus 152 ~q~picElElELKsG~~~aL~~la~~L~~~~--~l~~s~lSKAeRGY~ 197 (432)
T COG3025 152 RQEPICELELELKSGTPQALLALARTLAENT--GLRLSSLSKAERGYR 197 (432)
T ss_pred ccCchhheehhhhcCCHHHHHHHHHHHHHhC--Cccccchhhhhhccc
Confidence 399999999995 4566667777666 455566999999883
No 5
>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases. CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.
Probab=99.95 E-value=8.4e-27 Score=182.90 Aligned_cols=147 Identities=27% Similarity=0.226 Sum_probs=109.9
Q ss_pred eeEeeccCCCHHHHHHHHHh----hCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCce
Q 041449 2 EVEVKLRLKDSTAHQKLSNI----LSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGIS 77 (204)
Q Consensus 2 EiElK~~~~~~~~~~~l~~~----l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~ 77 (204)
|||+|| .++++.+.++..+ ++.......+|.|+||||||++|.++++.||+|.. +++|.||+|+++.. +
T Consensus 1 EiElK~-~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~YfDT~d~~l~~~~lrlR~r~~--~~~~~~TlK~~~~~----~ 73 (174)
T cd07374 1 EVERKF-RVPDDAVLPLLLGVPGVLGVGEPETVQLRAIYFDTPDLRLARAGLRLRRRTG--GADAGWHLKLPGGI----S 73 (174)
T ss_pred CeeEEE-cCChHHhhHHHhhchhhcccccccceeeeeeEecCccchhhhCCcEEEEEcC--CCccEEEEEccCCC----C
Confidence 899999 8999999888864 23233456789999999999999998888888765 57899999998753 5
Q ss_pred eeeEeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeC-----CeEEEecceecCCc
Q 041449 78 RVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWK-----GLKLELDETTYGFG 152 (204)
Q Consensus 78 ~~~E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~-----~~el~lD~~~~~~~ 152 (204)
++.|||.+|++..++..+. + +......++. ...|.|++++.+.|..|.+. .++||||.+.+.++
T Consensus 74 ~r~E~e~~l~~~~~~~~~~-----~--~~~~~~~~~~----~~~l~p~~~~~~~R~~~~l~~~~~~~iei~lD~~~~~~~ 142 (174)
T cd07374 74 RRTEVRAPLGDAAAVAPLL-----L--AAALVLAVTR----GLPLRPVATIETTRTVYRLLDAGGVLAELDLDTVTARVL 142 (174)
T ss_pred CceEEEeecCCccCCcccc-----c--chhheeeecC----CCCceEEEEEEEEEEEEEecCCCceEEEEEecEEEEEEc
Confidence 5779999998876543221 1 0001111111 12399999999999999886 38999999998533
Q ss_pred ----ceeEEEEEecCcch
Q 041449 153 ----TSYEIECESLEPER 166 (204)
Q Consensus 153 ----~~~EiElEl~~g~~ 166 (204)
..||||+|++.|+.
T Consensus 143 ~~~~~~~e~E~El~~~~~ 160 (174)
T cd07374 143 DGGGTQYWREVEVELPDG 160 (174)
T ss_pred CCCcceEEEEEEEEEcCC
Confidence 46999999988854
No 6
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=99.94 E-value=7.3e-25 Score=171.31 Aligned_cols=159 Identities=27% Similarity=0.297 Sum_probs=130.4
Q ss_pred eeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeeeE
Q 041449 2 EVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQE 81 (204)
Q Consensus 2 EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~E 81 (204)
|||+|+++.+++.+..++..++........|+|+|||||+++|++++.+||||..++.+++++|+|++... ++++.+.|
T Consensus 1 EvEiK~~v~d~~~~~~~l~~l~~~~~~~~~q~d~Yfd~p~~~l~~~~~~LRiR~~~~~~~~~lT~K~~~~~-~~~~~~~E 79 (169)
T cd07890 1 EVEIKARVDDLEALRERLAALGGAEGGREFQEDIYFDHPDRDLAATDEALRLRRMGDSGKTLLTYKGPKLD-GGPKVREE 79 (169)
T ss_pred CEEEEEEeCCHHHHHHHHHhcccccccceeEeEEEEcCCchhHHhCCCcEEEEEeCCCCcEEEEEECCCCC-CCccceEE
Confidence 89999965568888887777655555678999999999999999999999999984336899999998764 23656679
Q ss_pred eeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEEEe
Q 041449 82 LEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECES 161 (204)
Q Consensus 82 ~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiElEl 161 (204)
|+.++++. ..+..+|..+| +.+++.+.+.|..|.++++.|+||..... |.+.|||+..
T Consensus 80 ~e~~v~~~-----------------~~~~~iL~~lg----~~~~~~~~K~R~~~~~~~~~v~lD~~~~l-G~f~EiE~~~ 137 (169)
T cd07890 80 IETEVADP-----------------EAMKEILERLG----FGPVGRVKKEREIYLLGQTRVHLDRVEGL-GDFVEIEVVL 137 (169)
T ss_pred EEEecCCH-----------------HHHHHHHHHcC----CceeEEEEEEEEEEEECCEEEEEEccCCC-CceEEEEEEe
Confidence 99998532 34556788887 68889999999999999999999998754 4588999988
Q ss_pred cCcchHHHHHHHHHHhCCCccc
Q 041449 162 LEPERDRKLIEGLLEENGIEYD 183 (204)
Q Consensus 162 ~~g~~~~~~~~~~l~~~~i~~~ 183 (204)
.+.+.+...+..++..+|+...
T Consensus 138 ~~~~~~~~~l~~~~~~lg~~~~ 159 (169)
T cd07890 138 EDIEEAEEGLGEAAELLGLLEY 159 (169)
T ss_pred CCcHHHHHHHHHHHHHcCCCcc
Confidence 8877778888999999998763
No 7
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=99.93 E-value=1.4e-25 Score=177.09 Aligned_cols=176 Identities=27% Similarity=0.324 Sum_probs=124.7
Q ss_pred CeeEeeccCCCHHHHHHHH---HhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCce
Q 041449 1 MEVEVKLRLKDSTAHQKLS---NILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGIS 77 (204)
Q Consensus 1 ~EiElK~~~~~~~~~~~l~---~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~ 77 (204)
+|||+|+ .+++.++.+|. ..+........+|+|+|||||+++|.+++++||||..+ +++|.+|+|.++.. |-
T Consensus 2 ~EiE~K~-~v~~~~~~~l~~~l~~~~~~~~~~~~~~d~Y~dt~~~~L~~~~~~lRiR~~~-~~~~~lTlK~~~~~--~~- 76 (185)
T PF01928_consen 2 IEIEIKF-LVPESDFEKLRLRLESLGAEFPKEEHQTDTYFDTPDRDLRKAGIALRIRREN-GDGWYLTLKGPGSD--GP- 76 (185)
T ss_dssp EEEEEEE-EESHHHHHHHHHHHHHCTEEEEEEEEEEEEEEEETTTHHHHTTSEEEEEEET-TTEEEEEEEEESSS--SS-
T ss_pred EEEEEEE-EcCHHHHHHHhhhhhhhccccCeEEEEEEEEEeCCChhHHhCCcEEEEEeec-CCccEEEEEccCcc--Cc-
Confidence 4999999 78788888763 33444455678899999999999999999999999763 35677999999864 21
Q ss_pred eeeEeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEE
Q 041449 78 RVQELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEI 157 (204)
Q Consensus 78 ~~~E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~Ei 157 (204)
+.|++..++.++....+. +.+.+..++..++ +.+++.+.+.|+.|.+++++|++|.+.+..+.++||
T Consensus 77 -~~e~~~~~~r~e~e~~i~--------~~~~~~~~l~~l~----l~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~~~~Ei 143 (185)
T PF01928_consen 77 -REEIEFEVSREEYEAPIS--------DAEEMREILEALG----LRPVARIEKKRRSYRLEGVEVELDEVDGLPGTFLEI 143 (185)
T ss_dssp -EEEEEEEESHHCCEEEHS--------HHHHHHHHHHHTT----CEEEEEEEEEEEEEEETTEEEEEEEETTTTEEEEEE
T ss_pred -ccccceeecchhhhcccc--------chHHHHHHHHHhc----CceeEEEEEEEEEEEECCEEEEEEEEecceEEEEEE
Confidence 235555554332211111 1234566777776 899999999999999999999999998886667777
Q ss_pred EEEecCcchHHHHHHHHHHhCCCccccCCCCHHHHHHh
Q 041449 158 ECESLEPERDRKLIEGLLEENGIEYDFSDFSKFAVFRS 195 (204)
Q Consensus 158 ElEl~~g~~~~~~~~~~l~~~~i~~~~~~~SK~~R~~~ 195 (204)
|++..+...+...+..++...+ .+..+..||+.|+|.
T Consensus 144 E~~~~~~~~~~~~~~~i~~~~~-~l~~~~~s~~~r~y~ 180 (185)
T PF01928_consen 144 EIESEDEEDLKEAAEEILALLN-ELGISENSKIERSYL 180 (185)
T ss_dssp EEEESSHHHHHHHHHHHHHHHH-HTTEEGGGBHHSHHH
T ss_pred EEcCCCHhHHHHHHHHHHHHhh-hcCCCccchHHHHHH
Confidence 7777666665555555443211 222334799999874
No 8
>cd07758 ThTPase Thiamine Triphosphatase. ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=99.93 E-value=4.6e-24 Score=170.47 Aligned_cols=166 Identities=20% Similarity=0.224 Sum_probs=119.8
Q ss_pred CeeEeeccCCCHHHHHHHHHhhCC--CCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcc--cCCc
Q 041449 1 MEVEVKLRLKDSTAHQKLSNILSP--YHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTI--SDGI 76 (204)
Q Consensus 1 ~EiElK~~~~~~~~~~~l~~~l~~--~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~--~~gl 76 (204)
||||+|| .++++...+|. .++. .......++|+|||||+++|++++++||||. ..|.+|+|.++.. .++.
T Consensus 1 ~EVE~Kf-~~~~~~~~~L~-~~~~~~~~~~~~~~~d~YfDtp~~~l~~~~~~LRiR~----~~~~lk~~~~~~~~~~~~~ 74 (196)
T cd07758 1 LEVERKF-RCGPSAEERLR-KLGALLELLGRRTFHDTYYDTPDNTLSLNDVWLRQRN----GQWELKIPPGGDPPTAGAN 74 (196)
T ss_pred CcEEEEe-cCCHHHHHHHH-hccCccCCCceEEEeeEEEeCCChhHHhCCcEEEEEC----CeEEEEecCCCCCCCCCCc
Confidence 7999999 67755444554 4554 4557789999999999999999999999994 2687777765431 1234
Q ss_pred eeeeEeeecCCchhhhhhhhC--CCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeC-CeEEEecceecCCcc
Q 041449 77 SRVQELEEPVPLATATESVAK--PQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWK-GLKLELDETTYGFGT 153 (204)
Q Consensus 77 ~~~~E~e~~l~~~~~~~~l~~--~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~-~~el~lD~~~~~~~~ 153 (204)
.++.|.+..+ +....+.. ...+|. ...+..++..+| +.++++++|.|..|.++ ++.|+||.+.++ ..
T Consensus 75 ~~~~E~~~~~---~~~~~v~~~~~~~~~~--~~~~~~~L~~lg----f~~~~~~~k~R~~y~~~~g~~v~LD~~~~G-~~ 144 (196)
T cd07758 75 TRYEELTGEA---AIAAALRKLLGGALPS--AGGLGDELANLG----LREFASFVTKRESWKLDGAFRVDLDRTDFG-YS 144 (196)
T ss_pred ceEEecccHH---HHHHHHHHhcCCCCCc--chhHHHHHhhCC----CeEEEEEEEEEEEEEcCCCcEEEEecccCC-cc
Confidence 4444555443 22222220 011221 234667778777 89999999999999999 679999999866 44
Q ss_pred eeEEEEEecC---c---chHHHHHHHHHHhCCCcc
Q 041449 154 SYEIECESLE---P---ERDRKLIEGLLEENGIEY 182 (204)
Q Consensus 154 ~~EiElEl~~---g---~~~~~~~~~~l~~~~i~~ 182 (204)
++|||+|+.+ . +.+.+.+..+++++|+.+
T Consensus 145 ~~EiE~~v~~~~~~~~~~~a~~~i~~~~~~lg~~~ 179 (196)
T cd07758 145 VGEVELLVEEEDNEAEVPAALAKIDELISALMERY 179 (196)
T ss_pred eEEEEEEEecccchhhHHHHHHHHHHHHHHhCCCc
Confidence 8999999877 3 356778899999999988
No 9
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=99.91 E-value=8.9e-23 Score=160.27 Aligned_cols=159 Identities=19% Similarity=0.200 Sum_probs=125.0
Q ss_pred CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449 1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ 80 (204)
Q Consensus 1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~ 80 (204)
+|||+|+++.+.+.+...+..++........|+|+|||+|+++|...+.+||||+. ++.+.+|+|+|+.. ++...+.
T Consensus 2 ~EvE~K~~v~d~~~~~~~L~~~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~LRiR~~--~~~~~lT~Kgp~~~-~~~~~~~ 78 (174)
T TIGR00318 2 IEVEVKAKIPDKEKVVEKLKNKGFKFIKKEFQHDIYFSNPCRDFASTDEALRIRKL--TGEKFVTYKGPKID-NESKTRK 78 (174)
T ss_pred EEEEEEEEcCCHHHHHHHHHhcCcccccccceEEEeecCCCcchhhCCcEEEEEEc--CCcEEEEEeCCccC-CcceEEE
Confidence 49999996567777766555555555667889999999999999999999999998 46899999998753 3444467
Q ss_pred EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEEE
Q 041449 81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECE 160 (204)
Q Consensus 81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiElE 160 (204)
|++..|++. +.+..++..+| +.++..+.+.|..|.+++..|+||..... |.+.|||.-
T Consensus 79 E~e~~v~d~-----------------~~~~~iL~~LG----~~~~~~v~K~R~~~~l~~~~i~lD~v~~l-G~FvEIE~~ 136 (174)
T TIGR00318 79 EIEFKIEDI-----------------ENALQILKKLG----FKKVYEVIKKRRIYQTNELNVSIDDVEGL-GFFLEIEKI 136 (174)
T ss_pred EEEEEECCH-----------------HHHHHHHHHCC----CeEEEEEEEEEEEEEECCEEEEEEccCCC-ccEEEEEEe
Confidence 999998443 34566788888 78999999999999999999999976643 466777776
Q ss_pred ecCc---chHHHHHHHHHHhCCCcccc
Q 041449 161 SLEP---ERDRKLIEGLLEENGIEYDF 184 (204)
Q Consensus 161 l~~g---~~~~~~~~~~l~~~~i~~~~ 184 (204)
..+. +.+...+..+++++|++...
T Consensus 137 ~~~~~~~~~~~~~i~~~~~~LGl~~~~ 163 (174)
T TIGR00318 137 INNINDKDLALEEIFEIINQLGIKDNI 163 (174)
T ss_pred cCCccchHHHHHHHHHHHHHcCCCcCc
Confidence 6543 45677889999999994444
No 10
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=99.88 E-value=9.9e-21 Score=146.38 Aligned_cols=158 Identities=23% Similarity=0.291 Sum_probs=129.0
Q ss_pred CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449 1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ 80 (204)
Q Consensus 1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~ 80 (204)
+|+|+|++.-+.+.....+..++..+.....|+|+|||.|.++|+.++.+||||..+ ++...+|+|+|..... ...|.
T Consensus 2 ~EVEvK~~v~d~e~i~~~l~~~~~~~~~~e~q~DiYf~~p~rdf~~tdealRiR~~~-~~~~~lTYKgp~ld~~-~k~r~ 79 (178)
T COG1437 2 YEVEVKFRVRDLEEIRERLASLGAKFIKEEEQEDIYFDHPCRDFADTDEALRIRRIN-GGEVFLTYKGPKLDRE-SKTRE 79 (178)
T ss_pred eeEEEEEEecCHHHHHHHHHhccccccceeeeeeeeeecCCcchhcCcceeEEEEec-CCcEEEEEeccccccc-cccee
Confidence 599999954367888877777777778889999999999999999999999999554 4789999999986422 23467
Q ss_pred EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEEE
Q 041449 81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECE 160 (204)
Q Consensus 81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiElE 160 (204)
|++..+++. +....+++.+| |.+++.+.+.|+.|...+..|+||.++.. |.+.|||.+
T Consensus 80 E~E~~v~D~-----------------~~~~~il~~LG----F~~~~~VkK~R~iY~~~~~~i~lD~VegL-G~F~EIE~~ 137 (178)
T COG1437 80 EIEIEVSDV-----------------EKALEILKRLG----FKEVAVVKKTREIYKVGNVTIELDAVEGL-GDFLEIEVM 137 (178)
T ss_pred eEEEEeCCH-----------------HHHHHHHHHcC----CceeeEEEEEEEEEeeCCEEEEEecccCC-cccEEEEEe
Confidence 999988532 24556888888 78999999999999999999999998764 467999999
Q ss_pred ecCcch---HHHHHHHHHHhCCCcc
Q 041449 161 SLEPER---DRKLIEGLLEENGIEY 182 (204)
Q Consensus 161 l~~g~~---~~~~~~~~l~~~~i~~ 182 (204)
+.+.++ +...+.+++.++|+..
T Consensus 138 ~~d~~e~~~~~~~~~~i~~~lGl~~ 162 (178)
T COG1437 138 VDDENEIDGAKEEIEEIARQLGLKE 162 (178)
T ss_pred cCCchhhHHHHHHHHHHHHHhCCCh
Confidence 988753 4567899999999963
No 11
>cd07750 PolyPPase_VTC_like Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins. Saccharomyces cerevisiae VTC-1, -2, -3, and -4 comprise the membrane-integral VTC complex. VTC-2, -3, and -4 contain polyP polymerase domains. For S. cerevisiae VTC4 it has been shown that this domain generates polyP from ATP by a phosphotransfer reaction releasing ADP. This activity is metal ion-dependent. The ATP gamma phosphate may be cleaved and then transferred to an acceptor phosphate to form polyP. PolyP is ubiquitous. In prokaryotes, it is a store of phosphate and energy. In eukaryotes, polyPs have roles in bone calcification, and osmoregulation, and in phosphate transport in the symbiosis of mycorrhizal fungi and plants. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=99.61 E-value=3e-14 Score=115.37 Aligned_cols=179 Identities=17% Similarity=0.131 Sum_probs=117.3
Q ss_pred eEeeccCCCHHHHHHHHHhhCCC-----CC--cceeEeeeeeeCCChhh-hhcCe------eeEEEEecC-CCeEEEEEc
Q 041449 3 VEVKLRLKDSTAHQKLSNILSPY-----HK--QTLFQENIFFDDKDSKL-SSNAA------VLRLRFYNL-NSHCILSLK 67 (204)
Q Consensus 3 iElK~~~~~~~~~~~l~~~l~~~-----~~--~~~~q~n~YfDTpd~~L-~~~~~------~LRiR~~~~-~~~~~~TlK 67 (204)
+|+|+ +++++++..|.+.+... .. ......|+|||||+++| ..+.. .+|+|.+++ .+...+.+|
T Consensus 2 ~E~Ky-~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~i~s~YfDt~~~~ly~~~~~g~~~r~K~R~R~Y~~~~~~~flE~K 80 (214)
T cd07750 2 YERKY-LVPASQLEALLAALKPHLRVDEYAGNRDYTIRSLYFDTPDLDLYREKLNGRRRREKVRIRSYGDSDGLIFLEVK 80 (214)
T ss_pred ceEEE-EeCHHHHHHHHHHHHhHCCCCCCCCCCCceEEEEEecCCcHHHHHHHhcCcCccceEEEEEcCCCCCcEEEEEE
Confidence 69999 99999998888775431 11 25678999999999999 44444 499999987 667899999
Q ss_pred cCCcccCCceeeeEeeecCCchhhhhhhhCCCccCCccHH-HHHHHHHHcCCCCceEEEeeeEEEEEEEEe--CCeEEEe
Q 041449 68 AKPTISDGISRVQELEEPVPLATATESVAKPQLLGQIDSK-IMKMVKQEYGVGDEFVCLGGFKNVRAVYEW--KGLKLEL 144 (204)
Q Consensus 68 ~~~~~~~gl~~~~E~e~~l~~~~~~~~l~~~~~~~~~~~~-~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~--~~~el~l 144 (204)
.... +.. .....+++...+..++.....+...... ....+.. ......|.|+..+.-.|..|.. .+..|++
T Consensus 81 ~k~~---~~~--~K~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~P~~~~~Y~R~a~~~~~~~~RiT~ 154 (214)
T cd07750 81 TKRG---RVT--YKRRLPLSPEDAERLLAGGYFFLLESQDPLAEEFYF-RMRYKQLRPVLLVSYRREALVSPDGGVRITF 154 (214)
T ss_pred EEEC---CEE--EEEEecCCHHHHHHHHcCCCccccccchhHHHHHHH-HHhcCCCCceEEEEEeeEEeecCCCCEEEEE
Confidence 7764 321 1444788877766666542222110000 0111111 1112237777666666766654 3589999
Q ss_pred cceecCC---------------cceeEEEEEecCcchHHHHHHHHHHhCCCccccCCCCHH
Q 041449 145 DETTYGF---------------GTSYEIECESLEPERDRKLIEGLLEENGIEYDFSDFSKF 190 (204)
Q Consensus 145 D~~~~~~---------------~~~~EiElEl~~g~~~~~~~~~~l~~~~i~~~~~~~SK~ 190 (204)
|.+.... ...++++||+|.+.....++..++...++. +...||+
T Consensus 155 D~~l~~~~~~~~~~~~~~~~~~~~~~~viLElK~~~~~p~~~~~ll~~~~l~--~~~~SKY 213 (214)
T cd07750 155 DTNLRYRDEDGDLFSGNLGTPILPPDLVILEVKYDGALPLWLADLLSSHGLE--PTSFSKY 213 (214)
T ss_pred eCCceeEeccccccCcccCCccCCCCcEEEEEeeCCCChHHHHHHHHhcCCE--eCCcccc
Confidence 9864211 114999999999877788999999877555 4458996
No 12
>cd07761 CYTH-like_CthTTM-like Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.
Probab=99.28 E-value=1.2e-10 Score=88.98 Aligned_cols=117 Identities=20% Similarity=0.162 Sum_probs=78.5
Q ss_pred CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449 1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ 80 (204)
Q Consensus 1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~ 80 (204)
||||.|| ++ ..+...+ .. .........|+.+ +.++|||+. ++++.+|+|+++ |+++ .
T Consensus 1 ~EiERKf-Lv--~~~~~~~---~~--~~~~~i~q~Yl~~--------~~~vRvR~~--~~~~~lT~K~~~----~~~R-~ 57 (146)
T cd07761 1 MEIERKF-LV--NELPAGL---ES--YKKVEIRQGYLSI--------NPEVRIRSK--GEKYILTVKSGG----GLVR-E 57 (146)
T ss_pred CcEEEEE-Eh--hhhhhhc---cc--CCCcEEEEEeccC--------CcEEEEEEE--CCEEEEEEEcCC----Ccce-E
Confidence 8999999 88 2343222 11 2234455668876 469999998 679999999875 5654 5
Q ss_pred EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEe-CCeEEEecceecCCcceeEEEE
Q 041449 81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEW-KGLKLELDETTYGFGTSYEIEC 159 (204)
Q Consensus 81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~-~~~el~lD~~~~~~~~~~EiEl 159 (204)
|+|..|+..+ ...+++. .....+.++|+.+.+ ++..+++|.-.......+-+|+
T Consensus 58 E~E~~I~~~~------------------~~~ll~~-------~~~~~I~K~R~~~~~~~~~~~~vD~~~g~~~gL~~~Ev 112 (146)
T cd07761 58 EIEIEIDKKE------------------FEHLLEK-------TEGNLIEKTRYLIPLEGGLLAELDVFEGRLTGLVYAEV 112 (146)
T ss_pred EEEEeCCHHH------------------HHHHHHh-------CCCCeEEEEEEEEEeCCCcEEEEEEEcCCCCCeEEEEE
Confidence 9999986542 2233321 123467999999999 8888999975433333467777
Q ss_pred EecCcc
Q 041449 160 ESLEPE 165 (204)
Q Consensus 160 El~~g~ 165 (204)
|+.+.+
T Consensus 113 E~~se~ 118 (146)
T cd07761 113 EFPSEE 118 (146)
T ss_pred EcCCch
Confidence 776654
No 13
>cd07891 CYTH-like_CthTTM-like_1 CYTH-like Clostridium thermocellum TTM-like subgroup 1. This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.
Probab=99.11 E-value=1.5e-09 Score=83.07 Aligned_cols=119 Identities=20% Similarity=0.181 Sum_probs=79.8
Q ss_pred CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449 1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ 80 (204)
Q Consensus 1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~ 80 (204)
||||.|| ++....+... . .......-.|+.+. .+.++|||.. ++++.+|+|++.. |+. |.
T Consensus 1 ~EiERKf-Lv~~~~~~~~-----~--~~~~~I~Q~Yl~~~------~~~~lRiR~~--~~~~~lT~K~~~~---~~~-R~ 60 (148)
T cd07891 1 LEIERKF-LVKGDAWRAL-----A--AKGVRIRQGYLSTD------PERTVRVRIA--GDRAYLTIKGPTN---GLS-RY 60 (148)
T ss_pred CeEEEEE-EECCcccccc-----c--CCCcEEEEEeeeCC------CCcEEEEEEe--CCEEEEEEEeCCC---Cce-EE
Confidence 8999999 8887666542 1 12344455599873 3459999998 6789999998865 454 46
Q ss_pred EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEEE
Q 041449 81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECE 160 (204)
Q Consensus 81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiElE 160 (204)
|+|.+|+.++.+ .++.. .....+.++|+.+.+++..++||.....+...+=+|+|
T Consensus 61 E~E~~i~~~~~~------------------~l~~~-------~~~~~I~K~R~~~~~~~~~~~lD~~~g~~~gL~~~EiE 115 (148)
T cd07891 61 EFEYEIPLADAE------------------ELLAL-------CEGPVIEKTRYRVPHGGHTWEVDVFHGENAGLVVAEIE 115 (148)
T ss_pred EEEEeCCHHHHH------------------HHHhc-------CCCCeEEEEEEEEEeCCEEEEEEEEcCCCCceEEEEEE
Confidence 999998655321 12111 12346799999999999999999865443223445556
Q ss_pred ecCc
Q 041449 161 SLEP 164 (204)
Q Consensus 161 l~~g 164 (204)
+.+.
T Consensus 116 ~~~e 119 (148)
T cd07891 116 LPSE 119 (148)
T ss_pred cCCc
Confidence 5544
No 14
>cd07751 PolyPPase_VTC4_like Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) protein VTC4, and similar proteins. Saccharomyces cerevisiae VTC-1, -2, -3, and -4 comprise the membrane-integral VTC complex. VTC-2,-3, and -4 contain polyP polymerase domains. S. cerevisiae VTC4 belongs to this subgroup. For VTC4 it has been shown that this domain generates polyP from ATP by a phosphotransfer reaction releasing ADP. This activity is metal ion-dependent. The ATP gamma phosphate may be cleaved and then transferred to an acceptor phosphate to form polyP. PolyP is ubiquitous. In prokaryotes, it is a store of phosphate and energy. In eukaryotes, polyPs have roles in bone calcification, and osmoregulation, and in phosphate transport in the symbiosis of mycorrhizal fungi and plants. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=99.00 E-value=2.4e-08 Score=84.47 Aligned_cols=193 Identities=13% Similarity=0.086 Sum_probs=117.9
Q ss_pred eEeeccCCCHHHHHHHHHhhCCC-----C---------------CcceeEeeeeeeCCChhhhhcCe-------eeEEEE
Q 041449 3 VEVKLRLKDSTAHQKLSNILSPY-----H---------------KQTLFQENIFFDDKDSKLSSNAA-------VLRLRF 55 (204)
Q Consensus 3 iElK~~~~~~~~~~~l~~~l~~~-----~---------------~~~~~q~n~YfDTpd~~L~~~~~-------~LRiR~ 55 (204)
.|.|+ .++++++..|...+... . .+..+.+|+|||||+++|....+ .||||.
T Consensus 8 ~e~Ky-~v~~~~~~~lk~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~SlYFDtp~~~ly~~kl~k~~~r~klRlR~ 86 (290)
T cd07751 8 RTTKY-WVHPRDVVPVKLAILKHLPVLVFNGSKEEEKEKEDVPPRDDSAITSVYFDNENLDLYHGRLERDEGAELIRLRW 86 (290)
T ss_pred eeEEE-EEcHHHHHHHHHHHHhhCCceecCCccccccccccccCCCCceEEEEEecCCcHHHHHHHhcCCCCCceEEEEe
Confidence 68999 99999988766663211 1 11345799999999999988764 999999
Q ss_pred ecCC---CeEEEEEccCCccc-CCceeeeEeeecCCchhhhhhhhCCCccC-----------------CccHHHHHHHHH
Q 041449 56 YNLN---SHCILSLKAKPTIS-DGISRVQELEEPVPLATATESVAKPQLLG-----------------QIDSKIMKMVKQ 114 (204)
Q Consensus 56 ~~~~---~~~~~TlK~~~~~~-~gl~~~~E~e~~l~~~~~~~~l~~~~~~~-----------------~~~~~~~~~ll~ 114 (204)
+|+. ....+.+|...... +|.+. ....+++..++..+|.....+. .-.......+..
T Consensus 87 Yg~~~~~~~vflE~K~k~~~~~~~~~~--K~R~~i~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~ 164 (290)
T cd07751 87 YGGMQDTDTVFVERKTHHESWTGEKSV--KERFALKEKYVNSFLKGKYTVDKVFRKLRKEGKKSEAEIEKLEALATEIQY 164 (290)
T ss_pred cCCCCCCCceEEEEEEeccCCccceeE--EEEeecCHHHHHHHHcCCcchHHHHHhhhhccccccccchhHHHHHHHHHH
Confidence 9753 67889999876432 34432 4567888777777765311110 001112222221
Q ss_pred HcCCCCceEEEeeeEEEEEEEEeC---CeEEEeccee-cCC--c--------------------c---eeEEEEEecCc-
Q 041449 115 EYGVGDEFVCLGGFKNVRAVYEWK---GLKLELDETT-YGF--G--------------------T---SYEIECESLEP- 164 (204)
Q Consensus 115 ~~~~~~~l~~~~~~~~~R~~~~~~---~~el~lD~~~-~~~--~--------------------~---~~EiElEl~~g- 164 (204)
.. ....|+|...+.=.|..|... ++-|++|.+- +.. . . +.-+=||+|-.
T Consensus 165 ~~-~~~~L~P~~~t~Y~R~Af~~~~d~~vRIT~Dt~L~~~~~d~~~~~~~~~~~~~~~~~l~~~~~~~f~~~ILEVK~~~ 243 (290)
T cd07751 165 VI-LKRKLKPVVRTFYRRTAFQLPDDNRVRISLDTELCMIDERGRDGRRRTTLNDWPFKQLPDNEIVRFPYAVLEVKLQT 243 (290)
T ss_pred HH-HhCCCcceEEEEEeEeeeecCCCCCEEEEEecCceeEecCccccccccccccCccccCCcccccCCCeEEEEEEecC
Confidence 11 011367765555566666542 3678888542 110 0 0 01245666543
Q ss_pred ---chHHHHHHHHHHhCCCccccCCCCHHHHHHhcCCCC
Q 041449 165 ---ERDRKLIEGLLEENGIEYDFSDFSKFAVFRSGKLPG 200 (204)
Q Consensus 165 ---~~~~~~~~~~l~~~~i~~~~~~~SK~~R~~~~~~~~ 200 (204)
+....++.+++..+++...+ ..||+..+++...|+
T Consensus 244 ~~~~~~P~Wi~~ll~~~~v~~v~-~FSKY~~G~A~L~~~ 281 (290)
T cd07751 244 QEGEEPPEWVEELLNSHLVEEVY-KFSKFLHGCATLFPD 281 (290)
T ss_pred CCCCCCCHHHHHHHhhCCceECC-CcCHHHHHHHHHccC
Confidence 55677999999988876544 379999988766554
No 15
>COG2954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.89 E-value=2e-08 Score=74.75 Aligned_cols=114 Identities=22% Similarity=0.347 Sum_probs=76.0
Q ss_pred CeeEeeccCCCHHHHHHHHHhhCCCCCcceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCceeee
Q 041449 1 MEVEVKLRLKDSTAHQKLSNILSPYHKQTLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGISRVQ 80 (204)
Q Consensus 1 ~EiElK~~~~~~~~~~~l~~~l~~~~~~~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl~~~~ 80 (204)
+|||.|| ++..+.++.+.+. .....-.|-.|++.. ++|||.. |++..+|+|++.+ ++. |.
T Consensus 3 ~EIERKF-LV~~d~WR~~a~~-------~i~~~q~y~at~~~~------tVRVRi~--g~~A~LTiK~~~~---~~~-R~ 62 (156)
T COG2954 3 IEIERKF-LVAGDGWRQLADG-------SIYRRQGYLATEQGR------TVRVRIV--GDRAYLTIKGGAS---GLS-RS 62 (156)
T ss_pred ceeeeee-eecCccHHHhhcc-------ceeecceeeecCCCc------EEEEEEe--cceEEEEEEcccc---cee-ee
Confidence 5999999 9999999988654 222334477777655 9999999 6799999998875 565 45
Q ss_pred EeeecCCchhhhhhhhCCCccCCccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEeccee--cCCcceeEEE
Q 041449 81 ELEEPVPLATATESVAKPQLLGQIDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETT--YGFGTSYEIE 158 (204)
Q Consensus 81 E~e~~l~~~~~~~~l~~~~~~~~~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~--~~~~~~~EiE 158 (204)
|+|.+++..++..+|. .. .| ..+.+.|..+.+.+..-.+|.=. ..+-...|||
T Consensus 63 EfEY~iPl~DA~e~l~--------------~~---~g--------~~IEK~R~~v~~~G~~wEVDvF~G~n~gLvvAEvE 117 (156)
T COG2954 63 EFEYEIPLADAEEMLT--------------TA---CG--------RVIEKTRYPVRHGGFLWEVDVFLGDNAGLVVAEVE 117 (156)
T ss_pred eeeecccccCHHHHHH--------------Hh---cc--------hheeeeEeeeeeCCEEEEEeeecCcccceEEEEEE
Confidence 8888876554333322 11 11 13477888888888777777522 2222236666
Q ss_pred E
Q 041449 159 C 159 (204)
Q Consensus 159 l 159 (204)
+
T Consensus 118 l 118 (156)
T COG2954 118 L 118 (156)
T ss_pred c
Confidence 5
No 16
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.65 E-value=8.3e-07 Score=81.09 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=90.8
Q ss_pred ceeEeeeeeeCCChhhhhcCeeeEEEEecCCCeEEEEEccCCcccCCc-----eeeeEeeecCCchhhhhhhhCCCccCC
Q 041449 29 TLFQENIFFDDKDSKLSSNAAVLRLRFYNLNSHCILSLKAKPTISDGI-----SRVQELEEPVPLATATESVAKPQLLGQ 103 (204)
Q Consensus 29 ~~~q~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~~~TlK~~~~~~~gl-----~~~~E~e~~l~~~~~~~~l~~~~~~~~ 103 (204)
.....++||.-|..++...+-+||||.. ++++.+|+|.. +.+|- ..+.|+++.+
T Consensus 276 ~~~~~DiYl~~P~~d~~~~~e~LRvR~~--~Gk~~Ltyke~--i~dgp~ii~pk~~fEv~v~~----------------- 334 (656)
T PLN02318 276 TEETYDIYLLPPGEDPETCQSYLRMRNR--DGKYSLMFEEW--VTDEPFIISPRITFEVSVRL----------------- 334 (656)
T ss_pred cceeeEEEecCCCCCchhccceEEEEec--CCEEEEEEecc--cccCCeecCcceeEEEeeeh-----------------
Confidence 3456899999999999999999999977 68999999932 22221 1122333322
Q ss_pred ccHHHHHHHHHHcCCCCceEEEeeeEEEEEEEEeCCeEEEecceecCCcceeEEEEEecCcchHHHHHHHHHHhCCCccc
Q 041449 104 IDSKIMKMVKQEYGVGDEFVCLGGFKNVRAVYEWKGLKLELDETTYGFGTSYEIECESLEPERDRKLIEGLLEENGIEYD 183 (204)
Q Consensus 104 ~~~~~~~~ll~~~~~~~~l~~~~~~~~~R~~~~~~~~el~lD~~~~~~~~~~EiElEl~~g~~~~~~~~~~l~~~~i~~~ 183 (204)
..+|..|| +...+.+++.|..|..+++.|++|.....+..+.||| +.+...+.++.+++|+...
T Consensus 335 ------~~gL~aLG----y~~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIe------g~~r~~V~~~a~kLGl~g~ 398 (656)
T PLN02318 335 ------LGGLMALG----YTIATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQ------GKDRLVVKDVAEQLGLEGS 398 (656)
T ss_pred ------HhHHHHcC----CceEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEe------hhHHHHHHHHHHHcCCCCC
Confidence 11567778 7888999999999999999999998876654456666 3345567788888999766
Q ss_pred cCCCCHH
Q 041449 184 FSDFSKF 190 (204)
Q Consensus 184 ~~~~SK~ 190 (204)
....|=.
T Consensus 399 ~i~~SYl 405 (656)
T PLN02318 399 YIPRTYI 405 (656)
T ss_pred cccccHH
Confidence 6555633
No 17
>PF09359 VTC: VTC domain; InterPro: IPR018966 This presumed domain is found in the yeast vacuolar transport chaperone proteins VTC2, VTC3 and VTC4. This domain is also found in a variety of bacterial proteins. ; PDB: 3G3O_A 3G3R_B 3G3U_A 3G3Q_A 3G3T_A.
Probab=98.58 E-value=2.4e-06 Score=72.00 Aligned_cols=185 Identities=16% Similarity=0.130 Sum_probs=101.7
Q ss_pred eEeeccCCCHHHHHHHHHhhCCCC-----C---------------cceeEeeeeeeCCChhhhhcC-------eeeEEEE
Q 041449 3 VEVKLRLKDSTAHQKLSNILSPYH-----K---------------QTLFQENIFFDDKDSKLSSNA-------AVLRLRF 55 (204)
Q Consensus 3 iElK~~~~~~~~~~~l~~~l~~~~-----~---------------~~~~q~n~YfDTpd~~L~~~~-------~~LRiR~ 55 (204)
.|.|+ .++++++..|...+.... . .....+++|||||++++-... ..+|||.
T Consensus 3 ~e~KY-~v~~~~~~~lk~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~SlYfDt~~~~~y~~~l~~~~~r~klRiR~ 81 (283)
T PF09359_consen 3 RETKY-WVHPDNLMELKQRLLKHLPVDEYGGSSEDKKDAAISDEKGDYTIRSLYFDTPDFDLYHDKLEGRENREKLRIRW 81 (283)
T ss_dssp EEEEE-EE-HHHHHHHHHHHHTTS-BEEESTTS-----------GGGGEEEEEEEE-TT-HHHHHHHHT-TT-EEEEEEE
T ss_pred EEEEE-EEcHHHHHHHHHHHHHhCCccccCCCccccccccccccCCCccEEEEEecCCChHHHHHHhcCCCCCceEEEEE
Confidence 69999 999999987777643221 1 134689999999998887764 5999999
Q ss_pred ecC----CCeEEEEEccCCcccCCceeeeEeeecCCchhhhhhhhCCCcc-------------C-Cc--cHHHHHHH---
Q 041449 56 YNL----NSHCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLL-------------G-QI--DSKIMKMV--- 112 (204)
Q Consensus 56 ~~~----~~~~~~TlK~~~~~~~gl~~~~E~e~~l~~~~~~~~l~~~~~~-------------~-~~--~~~~~~~l--- 112 (204)
+++ ++...+.+|.......+-... ....+++..++..++.....+ + .. .......+
T Consensus 82 Yg~~~~~~~~vflE~K~k~~~~~~~~s~-K~R~~l~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~ 160 (283)
T PF09359_consen 82 YGDNDPESSPVFLEIKTKHEGWTYEESV-KRRFPLKEKEAEDFLNGDYTWEDALEKMFDSGSWEEELEKSRQLAEEIQRL 160 (283)
T ss_dssp ESSCCG---EEEEEEEEEEEGGGTEEEE-EEEEEEEGGGHHHHHTTSCHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHH
T ss_pred eCCCCcCcceEEEEEEEecCCccccccc-eeEEEcCHHHHhhHhcCCccHHHHHHHhhhhccchhhhhhhHHHHHHHHHH
Confidence 975 357888888775432221001 334566666666666421100 0 00 01112222
Q ss_pred HHHcCCCCceEEEeeeEEEEEEEEeC---CeEEEecceec-------------------CC---c------------c--
Q 041449 113 KQEYGVGDEFVCLGGFKNVRAVYEWK---GLKLELDETTY-------------------GF---G------------T-- 153 (204)
Q Consensus 113 l~~~~~~~~l~~~~~~~~~R~~~~~~---~~el~lD~~~~-------------------~~---~------------~-- 153 (204)
+... .|.|+..+.=.|..|... +.-|++|.+-. .. . .
T Consensus 161 ~~~~----~l~P~~~~~Y~R~af~~~~~~~vRiT~D~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (283)
T PF09359_consen 161 IKRY----QLQPVLRTSYRRTAFQGPEDGNVRITFDTNLRFIREDTFDYDSPIRDPNNWRRPDEDFNGDYPFPLLPPGDV 236 (283)
T ss_dssp HHHT----T-EEEEEEEEEEEEEEETTEECEEEEEEEEEEEEE---TTSSSSST-TTSSS-SSTTSSSSTTTTTS-GGGE
T ss_pred HHhC----CCCceEEEEEEeeEEEccCCCcEEEEEccCeeEEEecccccccccccccccccccccccccccccccCcccc
Confidence 1222 378877776677777653 46777775432 00 0 0
Q ss_pred --eeEEEEEecCcc-hHHHHHHHHH-HhCCCccccCCCCHHHHHHh
Q 041449 154 --SYEIECESLEPE-RDRKLIEGLL-EENGIEYDFSDFSKFAVFRS 195 (204)
Q Consensus 154 --~~EiElEl~~g~-~~~~~~~~~l-~~~~i~~~~~~~SK~~R~~~ 195 (204)
+.-+=||+|-.. ....++.+++ ..+ ...+...||+..+++
T Consensus 237 ~~fp~aIlEvK~~~~~~P~wi~~Ll~~~~--~~~~~~fSKY~~g~a 280 (283)
T PF09359_consen 237 ARFPYAILEVKYDGEQLPSWIQDLLNSHL--VLEVPSFSKYCHGMA 280 (283)
T ss_dssp EE-SSEEEEEEEEEE---HHHHHHHTSTT---EE-TT--HHHHHHH
T ss_pred ccCCeEEEEEeeCCCCChHHHHHHHhccC--CccCCccCHHHHHHH
Confidence 013556776655 6677999999 443 444445899998764
No 18
>cd07892 PolyPPase_VTC2-3_like Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, and -3 , and similar proteins. Saccharomyces cerevisiae VTC-1, -2, -3, and -4 comprise the membrane-integral VTC complex. VTC-2, -3, and -4 contain polyP polymerase domains. S. cerevisiae VTC-2,and -3 belong to this subgroup. For VTC4 it has been shown that this domain generates polyP from ATP by a phosphotransfer reaction releasing ADP. This activity is metal ion-dependent. The ATP gamma phosphate may be cleaved and then transferred to an acceptor phosphate to form polyP. PolyP is ubiquitous. In prokaryotes, it is a store of phosphate and energy. In eukaryotes, polyPs have roles in bone calcification, and osmoregulation, and in phosphate transport in the symbiosis of mycorrhizal fungi and plants. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-strande
Probab=98.09 E-value=0.00026 Score=60.20 Aligned_cols=186 Identities=12% Similarity=0.076 Sum_probs=108.7
Q ss_pred eeccCCCHHHHHH----HHHhhCCC-C---------------CcceeEeeeeeeCCChhhhhcCe-------eeEEEEec
Q 041449 5 VKLRLKDSTAHQK----LSNILSPY-H---------------KQTLFQENIFFDDKDSKLSSNAA-------VLRLRFYN 57 (204)
Q Consensus 5 lK~~~~~~~~~~~----l~~~l~~~-~---------------~~~~~q~n~YfDTpd~~L~~~~~-------~LRiR~~~ 57 (204)
.|| .+.++++-. |+.||..- + ....+.+|+|||||+++|-..++ .||||.+|
T Consensus 10 ~Ky-wvh~dn~~evK~~IlrhLPvlvy~~~~~~~~~~~~~~~~~~~~ItSLYFDn~~~~ly~~kl~k~~~reklRlRwYg 88 (303)
T cd07892 10 YKF-WVHPDNLMEVKTRILRHLPVLVYNNQSSEDDDDVLGAGSEDPTITTLYFDNPNFDLYNDKLLKLNEAPTLRLRWTG 88 (303)
T ss_pred EEE-EEcHHHHHHHHHHHHhhCCceeecCCcccccccccccCCCCCcEEEEEeCCCCHHHHHHHhcCcCCCceEEEEEcC
Confidence 588 888887754 44443210 1 12346799999999999988875 89999996
Q ss_pred C---CCeEEEEEccCCcccCCceeeeEeeecCCchhhhhhhhCCCccCC-c------------cHHH---HHHHHHHcCC
Q 041449 58 L---NSHCILSLKAKPTISDGISRVQELEEPVPLATATESVAKPQLLGQ-I------------DSKI---MKMVKQEYGV 118 (204)
Q Consensus 58 ~---~~~~~~TlK~~~~~~~gl~~~~E~e~~l~~~~~~~~l~~~~~~~~-~------------~~~~---~~~ll~~~~~ 118 (204)
. .....+..|.....- |.+ .+...++....+..++...-.+.. + ...+ +..+....+
T Consensus 89 ~~~~~~~IflE~K~k~~~~-~~~--~K~R~~l~~k~v~~~l~g~~~~~~~~~k~~~~~~~~~~~~~l~~Ei~~~i~~~~- 164 (303)
T cd07892 89 KLSDKPDIFVEKKTFDENT-SSF--EEDKLQLKEKYINGFIFGKYKFEKKLQKMEKRGADLENLKKDVENIQDFIRENK- 164 (303)
T ss_pred CCCCCCCEEEEEEEEeCCC-Cee--EEEEeccCHHHHHHHHcCCcchhhhHHhhhhccccchhhHHHHHHHHHHHHHcC-
Confidence 3 356788888765421 332 256678888877777763211100 0 0011 122222222
Q ss_pred CCceEEEeeeEEEEEEEEeC---CeEEEeccee-c-C---------------------C-----cc----eeE------E
Q 041449 119 GDEFVCLGGFKNVRAVYEWK---GLKLELDETT-Y-G---------------------F-----GT----SYE------I 157 (204)
Q Consensus 119 ~~~l~~~~~~~~~R~~~~~~---~~el~lD~~~-~-~---------------------~-----~~----~~E------i 157 (204)
|+|...+.=.|..|..+ .+-|++|..- + . + +. ..| .
T Consensus 165 ---L~P~~r~~Y~RtAFq~~~d~~vRIT~Dtnl~~i~Ed~~d~~~p~r~~~~W~r~di~~~~~~p~~~L~~~e~~~Fp~a 241 (303)
T cd07892 165 ---LQPVLRAVYTRTAFQIPGDDRIRVSIDSDIAFIREDSFDKDRPIRDPNDWHRTDIDDSNSNPFKFLRKGEYSKFPYS 241 (303)
T ss_pred ---CceeEEEeEEEEEeecCCCCcEEEEEeCCceEEEeccccccccccCcccccccccccccccccccCCccccccCceE
Confidence 67766555566666554 2566666431 1 0 0 00 022 3
Q ss_pred EEEe--cC----cchHHHHHHHHHHhCCCccccCCCCHHHHHHhcCCC
Q 041449 158 ECES--LE----PERDRKLIEGLLEENGIEYDFSDFSKFAVFRSGKLP 199 (204)
Q Consensus 158 ElEl--~~----g~~~~~~~~~~l~~~~i~~~~~~~SK~~R~~~~~~~ 199 (204)
=||+ .. +.....++.+++..+.+...+ ..||+.-+.+...+
T Consensus 242 vLEIK~~~~~~~~~~~P~Wi~dLl~s~~v~~~~-~FSKy~~g~A~L~~ 288 (303)
T cd07892 242 VLEIKVKESLNKNRKHYEWVNDLTNSHLVKEVP-KFSKFVQGVASLFE 288 (303)
T ss_pred EEEEEEcccccccccccHHHHHHHhhcCceECC-CcCHHHHHHHHHcc
Confidence 3444 33 234577999999987777665 47999997754433
No 19
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=50.32 E-value=13 Score=26.59 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=20.6
Q ss_pred CHHHHHHHHHhhCCCCCcceeEeeeeeeCC
Q 041449 11 DSTAHQKLSNILSPYHKQTLFQENIFFDDK 40 (204)
Q Consensus 11 ~~~~~~~l~~~l~~~~~~~~~q~n~YfDTp 40 (204)
.|+..+++...+......-..-.-+|||||
T Consensus 23 ~pE~vr~i~d~lPies~an~WgeEiYF~tp 52 (126)
T COG2164 23 NPESVRRIYDSLPIESRANLWGEEIYFDTP 52 (126)
T ss_pred ChHHHHHHHHhCCchhhhhhccceEEeecc
Confidence 466777777776543333455688999999
No 20
>PF02940 mRNA_triPase: mRNA capping enzyme, beta chain; InterPro: IPR004206 The mRNA capping enzyme in yeast is composed of two subunits, alpha and beta. The alpha subunit has guanylyltransferase activity, whilst the beta subunit is an RNA 5'-triphosphatase []. This entry represents a structural domain found in the mRNA capping enzyme beta subunit. The domain is related to the CYTH domain.; GO: 0004651 polynucleotide 5'-phosphatase activity, 0016740 transferase activity; PDB: 3KYH_B 1D8H_C 1D8I_A 3BGY_B 2QZE_B 2QY2_A.
Probab=47.63 E-value=45 Score=26.67 Aligned_cols=31 Identities=10% Similarity=0.171 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHhhCCC------------CCcceeEeeeeeeCC
Q 041449 10 KDSTAHQKLSNILSPY------------HKQTLFQENIFFDDK 40 (204)
Q Consensus 10 ~~~~~~~~l~~~l~~~------------~~~~~~q~n~YfDTp 40 (204)
+++++|..+.+.|... ........|.||..+
T Consensus 67 v~~~~f~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~D~~y~~~ 109 (215)
T PF02940_consen 67 VSEEQFKRLNEYLNELVRNESSSPRIPFSYKHSREIDSFYEIP 109 (215)
T ss_dssp B-HHHHHHHHHHHHHHHHHCCHHHCCCCCECCCEEEEEEEEEE
T ss_pred cCHHHHHHHHHHHHhhhcccccCCCCccccceeEEEEEEEEcc
Confidence 5667777666654321 123456799999988
No 21
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]
Probab=45.50 E-value=56 Score=29.34 Aligned_cols=27 Identities=30% Similarity=0.637 Sum_probs=22.2
Q ss_pred eEeeeeeeCCChhhhhcC-------eeeEEEEec
Q 041449 31 FQENIFFDDKDSKLSSNA-------AVLRLRFYN 57 (204)
Q Consensus 31 ~q~n~YfDTpd~~L~~~~-------~~LRiR~~~ 57 (204)
..+.+|||..+++|-..+ .+||+|=+|
T Consensus 234 ~itslYfDN~~fDLY~~rL~K~~~A~alRLrWyg 267 (509)
T COG5036 234 AITSLYFDNENFDLYNGRLEKLEGAEALRLRWYG 267 (509)
T ss_pred ceeEEEecccchHHHhhHHHhhcCCceeEEEeec
Confidence 358899999999987654 499999885
No 22
>cd07470 CYTH-like_mRNA_RTPase CYTH-like mRNA triphosphatase (RTPase) component of the mRNA capping apparatus. This subgroup includes fungal and protozoal RTPases. RTPase catalyzes the first step in the mRNA cap formation process, the removal of the gamma-phosphate of triphosphate terminated pre-mRNA. This activity is metal-dependent. The 5'-end of the resulting mRNA diphosphate is subsequently capped with GMP by RNA guanylytransferase, and then further modified by one or more methyltransferases. The mRNA cap-forming activity is an essential step in mRNA processing. The RTPases are not conserved among eukarya. The structure and mechanism of this fungal RTPase domain group is different from that of higher eukaryotes. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel. The RTPase domain of the mimivirus RTPase-GTase fusion mRNA capping enzyme also belongs to this
Probab=44.47 E-value=85 Score=25.84 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=21.2
Q ss_pred EEEEEEEEeCCeEEEecceecC-----CcceeEEEEEecCcc
Q 041449 129 KNVRAVYEWKGLKLELDETTYG-----FGTSYEIECESLEPE 165 (204)
Q Consensus 129 ~~~R~~~~~~~~el~lD~~~~~-----~~~~~EiElEl~~g~ 165 (204)
.+.|..|......+.|=++.-. ....||||+|+....
T Consensus 173 ~K~R~Sy~~~~~~iDlT~V~~~~~~~~~~~~~EvEiEl~~~~ 214 (243)
T cd07470 173 RKDRLSYTHNAFRIDLTKVTSSEPNQHTEESYEVEVELDSKA 214 (243)
T ss_pred eeceeeEEeCCEEEEeEEEEecCCCCCCCccEEEEEEeChHH
Confidence 4566677665444444333222 122499999998653
No 23
>PF04667 Endosulfine: cAMP-regulated phosphoprotein/endosulfine conserved region; InterPro: IPR006760 This endosulphine family includes cAMP-regulated phosphoprotein 19 (ARPP-19), alpha endosulphine and protein Igo1. No function has yet been assigned to ARPP-19 []. Endosulphine is the endogenous ligand for the ATP-dependent potassium channels which occupy a key position in the control of insulin release from the pancreatic beta cell by coupling cell polarity to metabolism []. Igo1 is required for initiation of G0 program. In the absence of stimulatory signals, cells may enter into a reversible quiescence (or G0) state that is typically characterised by low metabolic activity, including low rates of protein synthesis and transcription. Igo proteins associate with the mRNA decapping activator Dhh1, sheltering newly expressed mRNAs from degradation via the 5'-3' mRNA decay pathway, and thereby enabling their proper translation during initiation of the G0 program [].
Probab=37.89 E-value=11 Score=25.94 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=16.2
Q ss_pred EeeeeeeCCChhhhhcCee
Q 041449 32 QENIFFDDKDSKLSSNAAV 50 (204)
Q Consensus 32 q~n~YfDTpd~~L~~~~~~ 50 (204)
+.--|||.-|+.|.+++..
T Consensus 33 ~~rKYFDSgDyam~Ka~~~ 51 (86)
T PF04667_consen 33 QKRKYFDSGDYAMAKAGKK 51 (86)
T ss_pred ccccccchHHHHHHHhhcc
Confidence 3477999999999999864
No 24
>KOG2435 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.33 E-value=81 Score=26.53 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=17.7
Q ss_pred CeeeEEEEecCCCeEEEEEccCCcc
Q 041449 48 AAVLRLRFYNLNSHCILSLKAKPTI 72 (204)
Q Consensus 48 ~~~LRiR~~~~~~~~~~TlK~~~~~ 72 (204)
.++|||| |||..|..+++++...
T Consensus 203 ~L~LrvR--GDGRsy~inihte~~~ 225 (323)
T KOG2435|consen 203 TLYLRVR--GDGRSYMINIHTETDF 225 (323)
T ss_pred eEEEEEe--cCCceEEEEecCccch
Confidence 3578888 5578899999988753
Done!