BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041450
(949 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 1358 bits (3514), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 671/873 (76%), Positives = 733/873 (83%)
Query: 5 SLEEIKNENVDLERIPVAEVFEQLKCTPKGLTTAEGEKRLQIFGYNXXXXXXXXXXXXFL 64
SLE+IKNE VDLE+IP+ EVF+QLKC+ +GLTT EGE R+QIFG N FL
Sbjct: 3 SLEDIKNETVDLEKIPIEEVFQQLKCSREGLTTQEGEDRIQIFGPNKLEEKKESKLLKFL 62
Query: 65 GFMWNPLSWVMEAAAIMAIVLANGGGKPPDWPDFVGIVVLLFINSTISFIEEXXXXXXXX 124
GFMWNPLSWVME AAIMAI LANG G+PPDW DFVGI+ LL INSTISFIEE
Sbjct: 63 GFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAA 122
Query: 125 XXXXXXXPKTKVLRDEKWSEQEAEILVPGDIISIKLGDIVPADARLLEGDPLKIDQAALT 184
PKTKVLRD KWSEQEA ILVPGDI+SIKLGDI+PADARLLEGDPLK+DQ+ALT
Sbjct: 123 ALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALT 182
Query: 185 GESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTA 244
GESLPVTK+PG EVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTA
Sbjct: 183 GESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTA 242
Query: 245 IGNFCICSIAVGMFIEIIVMWAIQRRSYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSH 304
IGNFCICSIA+GM IEIIVM+ IQRR YRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSH
Sbjct: 243 IGNFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSH 302
Query: 305 RLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKSLIEVFVKGTDSDGLLLAA 364
RLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDK+L+EVF KG + D +LL A
Sbjct: 303 RLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFA 362
Query: 365 ARASRVENQDAIDASIVGMLADPKEARAGITEVHFLPFNPVDKRTAITYIDSNGDWHRTS 424
A ASRVENQDAIDA++VGMLADPKEARAGI EVHFLPFNPVDKRTA+TYID +G+WHR S
Sbjct: 363 AMASRVENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVS 422
Query: 425 KGAPEQIIDLCGLKGEMRRKAHQIIDNFAERGLRALGVGRQTVPEKTKESEGSPWEFVGL 484
KGAPEQI++L ++ +K IID +AERGLR+L V RQ VPEKTKES G+PWEFVGL
Sbjct: 423 KGAPEQILELAKASNDLSKKVLSIIDKYAERGLRSLAVARQVVPEKTKESPGAPWEFVGL 482
Query: 485 LPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSK 544
LPLFDPPRHDSAETIRRAL+LGVNVKMITGDQLAIGKETGRRLGMGTNMYPSS+LLG K
Sbjct: 483 LPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHK 542
Query: 545 DESIASMPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKRXXXX 604
D ++AS+PVEELIEKADGFAGVFPEHKYEIVKKLQERKHI GMTGDGVNDAPALK+
Sbjct: 543 DANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIG 602
Query: 605 XXXXXXXXXXXXXXXXVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLL 664
VLTEPGLSVI+SAVLTSRAIFQRMKNYTIYAVSITIRIV GF+L
Sbjct: 603 IAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFML 662
Query: 665 VALLWKFDFPPFMILIIAILNDGTIMTISKDRVKPSPMPDSWKLKEIFGTGVVLGTYMAL 724
+AL+W+FDF FM+LIIAILNDGTIMTISKDRVKPSP PDSWKLKEIF TGVVLG Y A+
Sbjct: 663 IALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLGGYQAI 722
Query: 725 VTAFFFWLIHDTRFFTNTFNLKEIHEKPDMLSAALYLQVSIISQALIFVTRSRSWSFVER 784
+T FFW H T FF++TF ++ I + L A+YLQVSIISQALIFVTRSRSWSFVER
Sbjct: 723 MTVIFFWAAHKTDFFSDTFGVRSIRDNNHELMGAVYLQVSIISQALIFVTRSRSWSFVER 782
Query: 785 PGVMLVGAFLVAQLLATIIAVYAKWEFARIEXXXXXXXXXXXXFSIITYLPLDPLKFVIR 844
PG +L+ AFL+AQL+AT+IAVYA WEFA+I +SI+TY PLD KF IR
Sbjct: 783 PGALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIR 842
Query: 845 YAQSGKAWDNLLQNKTAFTTKKDYGKGEREAQW 877
Y SGKAW NL +NKTAFT KKDYGK EREAQW
Sbjct: 843 YILSGKAWLNLFENKTAFTMKKDYGKEEREAQW 875
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 290/857 (33%), Positives = 443/857 (51%), Gaps = 63/857 (7%)
Query: 31 TPKGLTTAEGEKRLQIFGYNXXXXXXXXXXXXFLGFMWNPLSWVMEAAAIMAIVLANGGG 90
T GLT+ E +R + +G N FLGF P+ +VME AA++A L
Sbjct: 84 TRVGLTSEEVVQRRRKYGLNQMKEEKENHFLKFLGFFVGPIQFVMEGAAVLAAGL----- 138
Query: 91 KPPDWPDFVGIVVLLFINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDEKWSEQEAEIL 150
DW DF I LL +N+ + F++E K VLRD E EA +
Sbjct: 139 --EDWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEV 196
Query: 151 VPGDIISIKLGDIVPADARLLEGDP-LKIDQAALTGESLPVTKNPGDEVFSGSTCKQGEI 209
VPGDI+ ++ G I+PAD R++ D L++DQ+ALTGESL V K+ GD+VF+ S K+GE
Sbjct: 197 VPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRGEA 256
Query: 210 EAVVIATGVHTFFGKAAHLVDS-TNQVGHFQKVLTAIGNFCICSIAVGMFIEIIVMWAIQ 268
V+ ATG +TF G+AA LV++ + GHF +VL IG + + ++++W
Sbjct: 257 FVVITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLILV----IFTLLIVWV-- 310
Query: 269 RRSYRDG-----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMA 323
YR ++ L + I G+P+ +P V++ TMA+G+ L+++ AI ++++AIE +A
Sbjct: 311 SSFYRSNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLA 370
Query: 324 GMDVLCSDKTGTLTLNKLSVDKSLIEVFVKGTDSDGLLLAAARASRVENQ--DAIDASIV 381
G+++LCSDKTGTLT NKLS+ V G D + L+L A A+ + + DAID + +
Sbjct: 371 GVEILCSDKTGTLTKNKLSLHDPYT---VAGVDPEDLMLTACLAASRKKKGIDAIDKAFL 427
Query: 382 GMLADPKEARAGITE---VHFLPFNPVDKRTAITYIDSNGDWHRTSKGAPEQIIDLCGLK 438
L A++ +++ + F PF+PV K+ G+ KGAP ++
Sbjct: 428 KSLKYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEED 487
Query: 439 GEMRRKAHQIIDN----FAERGLRALGVGRQTVPEKTKESEGSPWEFVGLLPLFDPPRHD 494
+ + Q N FA RG R+LGV R K EGS WE +G++P DPPRHD
Sbjct: 488 HPIPEEVDQAYKNKVAEFATRGFRSLGVAR-------KRGEGS-WEILGIMPCMDPPRHD 539
Query: 495 SAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASMP-- 552
+ +T+ A LG+++KM+TGD + I +ET R+LG+GTN+Y + + MP
Sbjct: 540 TYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAE----RLGLGGGGDMPGS 595
Query: 553 -VEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKRXXXXXXXXXXX 611
V + +E ADGFA VFP+HKY +V+ LQ+R ++ MTGDGVNDAP+LK+
Sbjct: 596 EVYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGSS 655
Query: 612 XXXXXXXXXVLTEPGLSVIVSAVLTSRAIFQRMKNYTIY--AVSITIRIVLGFLLVALLW 669
V PGL I+ A+ TSR IF RM Y +Y A+SI + I LG + L
Sbjct: 656 DAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHLEIFLGLWIAILNR 715
Query: 670 KFDFPPFMILIIAILNDGTIMTISKDRVKPSPMPDSWKLKEIFGTGVVLGTYMALVTAFF 729
+ +++ IAI D + I+ D S P W L +++G V+LG +A+ T
Sbjct: 716 SLNIE--LVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVLLGVVLAVGT--- 770
Query: 730 FWLIHDTRFFTNTFNLKEIHEKPDMLSAALYLQVSIISQALIFVTRSRSWSFVERPGVML 789
W I T + N + +M L+LQ+S+ LIF+TR+ + P L
Sbjct: 771 -W-ITVTTMYAQGENGGIVQNFGNM-DEVLFLQISLTENWLIFITRANGPFWSSIPSWQL 827
Query: 790 VGAFLVAQLLATIIAVYAKWEFARIEXXXXXXXXXXXXFSIITYLPLDPLKFVIRYAQSG 849
GA + +LAT ++ +E + FS + + + +++ Q
Sbjct: 828 SGAIFLVDILATCFTIWGWFEHSDTS---IVAVVRIWIFSFGIFCIMGGVYYIL---QDS 881
Query: 850 KAWDNLLQNKTAFTTKK 866
+DNL+ K+ +K
Sbjct: 882 VGFDNLMHGKSPKGNQK 898
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 161/689 (23%), Positives = 290/689 (42%), Gaps = 127/689 (18%)
Query: 98 FVGIVV--LLFINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDEKWSEQEAEILVPGDI 155
++G+V+ ++ I S+ +E + V+R+ + AE +V GD+
Sbjct: 106 YLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDL 165
Query: 156 ISIKLGDIVPADARLLEGDPLKIDQAALTGESLPVTKNPG----------DEVFSGSTCK 205
+ +K GD +PAD R++ + K+D ++LTGES P T++P + F + C
Sbjct: 166 VEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCV 225
Query: 206 QGEIEAVVIATGVHTFFGKAAHLVDSTN--------QVGHFQKVLTAIGNFCICSIAVGM 257
+G +V+ TG T G+ A L ++ HF ++T + F + V
Sbjct: 226 EGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVF----LGVSF 281
Query: 258 FIEIIVMWAIQRRSYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMT 317
FI +++ ++ + + L+ +++ +P + ++V + + + R++++ + K +
Sbjct: 282 FILSLIL----EYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLE 337
Query: 318 AIEEMAGMDVLCSDKTGTLTLNKLSV-----DKSLIE---------VFVKGTDSDGLLLA 363
A+E + +CSDKTGTLT N+++V D + E V T + L L+
Sbjct: 338 AVETLGSTSTICSDKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALS 397
Query: 364 -----AARASRVENQDAI---------DASIVGML-------ADPKEARAGITEVHFLPF 402
RA NQ+ + DAS +L KE R T++ +PF
Sbjct: 398 RIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPF 457
Query: 403 NPVDKRTAITYIDSNGDWHR---TSKGAPEQIIDLCG---LKGEMRRKAHQIIDNFAER- 455
N +K + + N R KGAPE+I+D C + G+ + ++ D F
Sbjct: 458 NSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAY 517
Query: 456 ------GLRALGVGRQTVPEKTKESEGSPWE------------FVGLLPLFDPPRHDSAE 497
G R LG +P++ + EG ++ FVGL+ + DPPR +
Sbjct: 518 LELGGLGERVLGFCHLFLPDE-QFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPD 576
Query: 498 TIRRALDLGVNVKMITGDQ-------------LAIGKETGRRLGMGTNMYPS-------- 536
+ + G+ V M+TGD ++ G ET + N+ S
Sbjct: 577 AVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAK 636
Query: 537 SSLLGQSKDESIASMPVEELIEKADG--FAGVFPEHKYEIVKKLQERKHICGMTGDGVND 594
+ ++ S + + S ++++++ FA P+ K IV+ Q + I +TGDGVND
Sbjct: 637 ACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVND 696
Query: 595 APALKRXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVS 653
+PA K+ +L + + IV+ V R IF +K Y ++
Sbjct: 697 SPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLT 756
Query: 654 ITIRIVLGFLLVALLWKFDFPPFMILIIA 682
I + PF+I IIA
Sbjct: 757 SNIP--------------EITPFLIFIIA 771
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 155/667 (23%), Positives = 274/667 (41%), Gaps = 105/667 (15%)
Query: 98 FVGIVV--LLFINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDEKWSEQEAEILVPGDI 155
++G+V+ ++ + S+ +E + V+RD + S AE +V GD+
Sbjct: 136 YLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDL 195
Query: 156 ISIKLGDIVPADARLLEGDPLKIDQAALTGESLPVTKNPG----------DEVFSGSTCK 205
+ +K GD +PAD R++ K+D ++LTGES P T++P + F + C
Sbjct: 196 VEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCV 255
Query: 206 QGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQ-KVLTAIGNFCICSIAVGMFIEIIVM 264
+G VV+ TG T G+ A L S +VG + I +AV + + ++
Sbjct: 256 EGTARGVVVYTGDRTVMGRIATLA-SGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFIL 314
Query: 265 WAIQRRSYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAG 324
I S+ + + L+ +++ +P + ++V + + + R++++ + K + A+E +
Sbjct: 315 SLILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGS 374
Query: 325 MDVLCSDKTGTLTLNKLSVDKSLIEVFVKGTDS----------------DGLLLAAARAS 368
+CSDKTGTLT N+++V + + D+ L AA +
Sbjct: 375 TSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATWSALSRIAALCN 434
Query: 369 RV---ENQDAI---------DAS----------IVGMLADPKEARAGITEVHFLPFNPVD 406
R QD + DAS G + ++ I E+ PFN +
Sbjct: 435 RAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEI---PFNSTN 491
Query: 407 KRTAITYIDSNGDWHR---TSKGAPEQIIDLCG----------LKGEMRRKAHQIIDNFA 453
K + + R KGAPE+I+D C LK +M+
Sbjct: 492 KYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYLELG 551
Query: 454 ERGLRALGVGRQTVPEKTKESEGSPWE------------FVGLLPLFDPPRHDSAETIRR 501
G R LG +PE K +EG P++ FVGL+ + DPPR + + +
Sbjct: 552 GLGERVLGFCHFALPED-KYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGK 610
Query: 502 ALDLGVNVKMITGDQLAIGKETGRRLGM--------------------GTNMYPSSSLLG 541
G+ V M+TGD K + +G+ N + + +
Sbjct: 611 CRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVV 670
Query: 542 QSKD-ESIASMPVEELIEKADG--FAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPAL 598
D + +++ +++++ FA P+ K IV+ Q + I +TGDGVND+PAL
Sbjct: 671 HGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPAL 730
Query: 599 KRXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIR 657
K+ +L + + IV+ V R IF +K Y ++ I
Sbjct: 731 KKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIP 790
Query: 658 IVLGFLL 664
+ FL+
Sbjct: 791 EITPFLV 797
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 160/689 (23%), Positives = 289/689 (41%), Gaps = 127/689 (18%)
Query: 98 FVGIVV--LLFINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDEKWSEQEAEILVPGDI 155
++G+V+ ++ I S+ +E + V+R+ + AE +V GD+
Sbjct: 100 YLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDL 159
Query: 156 ISIKLGDIVPADARLLEGDPLKIDQAALTGESLPVTKNPG----------DEVFSGSTCK 205
+ +K GD +PAD R++ + K+D ++LTGES P T++P + F + C
Sbjct: 160 VEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCV 219
Query: 206 QGEIEAVVIATGVHTFFGKAAHLVDSTN--------QVGHFQKVLTAIGNFCICSIAVGM 257
+G +V+ TG T G+ A L ++ HF ++T + F + V
Sbjct: 220 EGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVF----LGVSF 275
Query: 258 FIEIIVMWAIQRRSYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMT 317
FI +++ ++ + + L+ +++ +P + ++V + + + R++++ + K +
Sbjct: 276 FILSLIL----EYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLE 331
Query: 318 AIEEMAGMDVLCSDKTGTLTLNKLSV-----DKSLIE---------VFVKGTDSDGLLLA 363
A+E + +CS KTGTLT N+++V D + E V T + L L+
Sbjct: 332 AVETLGSTSTICSXKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALS 391
Query: 364 -----AARASRVENQDAI---------DASIVGML-------ADPKEARAGITEVHFLPF 402
RA NQ+ + DAS +L KE R T++ +PF
Sbjct: 392 RIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPF 451
Query: 403 NPVDKRTAITYIDSNGDWHR---TSKGAPEQIIDLCG---LKGEMRRKAHQIIDNFAER- 455
N +K + + N R KGAPE+I+D C + G+ + ++ D F
Sbjct: 452 NSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAY 511
Query: 456 ------GLRALGVGRQTVPEKTKESEGSPWE------------FVGLLPLFDPPRHDSAE 497
G R LG +P++ + EG ++ FVGL+ + DPPR +
Sbjct: 512 LELGGLGERVLGFCHLFLPDE-QFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPD 570
Query: 498 TIRRALDLGVNVKMITGDQ-------------LAIGKETGRRLGMGTNMYPS-------- 536
+ + G+ V M+TGD ++ G ET + N+ S
Sbjct: 571 AVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAK 630
Query: 537 SSLLGQSKDESIASMPVEELIEKADG--FAGVFPEHKYEIVKKLQERKHICGMTGDGVND 594
+ ++ S + + S ++++++ FA P+ K IV+ Q + I +TGDGVND
Sbjct: 631 ACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVND 690
Query: 595 APALKRXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVS 653
+PA K+ +L + + IV+ V R IF +K Y ++
Sbjct: 691 SPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLT 750
Query: 654 ITIRIVLGFLLVALLWKFDFPPFMILIIA 682
I + PF+I IIA
Sbjct: 751 SNIP--------------EITPFLIFIIA 765
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 165/712 (23%), Positives = 286/712 (40%), Gaps = 140/712 (19%)
Query: 71 LSWVMEAAAIMAIVL-ANGGGKPPDWPDFVGI--VVLLFINSTISFIEEXXXXXXXXXXX 127
L WV A ++A + A+ G D ++ + + ++ + + +E
Sbjct: 113 LMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFK 172
Query: 128 XXXXPKTKVLRDEKWSEQEAEILVPGDIISIKLGDIVPADARLLEGDPLKIDQAALTGES 187
+ V+RD + A+ LV GD++ +K GD VPAD R+L+ K+D ++LTGES
Sbjct: 173 NLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGES 232
Query: 188 LPVTKNPG----------DEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTN---- 233
P T++P + F + C +G + +V+ TG T G+ A L
Sbjct: 233 EPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVVNTGDRTIIGRIASLASGVENEKT 292
Query: 234 ----QVGHFQKVLTAI-----GNFCICSIAVGM-FIEIIVMWAIQRRSYRDGIDNLLVLL 283
++ HF ++ + F I ++ +G F+ +V + + ++
Sbjct: 293 PIAIEIEHFVDIIAGLAILFGATFFIVAMCIGYTFLRAMVFF--------------MAIV 338
Query: 284 IGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSV 343
+ +P + ++V +++ + RL+ + + K + A+E + V+CSDKTGTLT N+++V
Sbjct: 339 VAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTV 398
Query: 344 DKSLIEVFVKGTDSDG-------------------LLLAAARASRVENQDAI-------- 376
+ + D+ +L RA+ QDA+
Sbjct: 399 SHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVI 458
Query: 377 -DASIVGM-------LADPKEARAGITEVHFLPFNPVDK-RTAITYIDSNGDWHR--TSK 425
DAS + L + R +V +PFN +K + +I ++ D K
Sbjct: 459 GDASETALLKFSELTLGNAMGYRERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMK 518
Query: 426 GAPEQIIDLCG---LKG------EMRRKAHQIID-NFAERGLRALGVGRQTVPEKTK--- 472
GAPE++++ C +KG E R+A Q + G R LG + + EK
Sbjct: 519 GAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPG 578
Query: 473 -----ESEGSP---WEFVGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETG 524
E+ P F GL+ + DPPR + + + G+ V M+TGD K
Sbjct: 579 YAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIA 638
Query: 525 RRLGMGTNMYPSSSLLGQSKDESIAS---MPVE-----------------------ELIE 558
+G+ + G E IA+ +PV+ EL+E
Sbjct: 639 ASVGIISE--------GSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVE 690
Query: 559 KADG-----FAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKRXXX-XXXXXXXXX 612
FA P+ K IV+ Q I +TGDGVND+PALK+
Sbjct: 691 ALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSD 750
Query: 613 XXXXXXXXVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLL 664
+L + + IV+ V R IF +K Y ++ I + +L+
Sbjct: 751 AAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLI 802
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 127/287 (44%), Gaps = 24/287 (8%)
Query: 425 KGAPEQIIDLCG----------LKGEMRRKAHQIIDNFA--ERGLRALGVGRQTVPEKTK 472
KGAPE +ID C + G ++ K +I + LR L + + P K +
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 473 E------SEGSPWE----FVGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKE 522
E S +E FVG++ + DPPR + +I+ D G+ V MITGD
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 634
Query: 523 TGRRLGM-GTNMYPSSSLLGQSKDESIASMPVEELIEKADGFAGVFPEHKYEIVKKLQER 581
RR+G+ G N + + + + E +A FA V P HK +IV+ LQ
Sbjct: 635 ICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSY 694
Query: 582 KHICGMTGDGVNDAPALKRXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIVSAVLTSRAIF 641
I MTGDGVNDAPALK+ VL + S IV+AV RAI+
Sbjct: 695 DEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIY 754
Query: 642 QRMKNYTIYAVSITI-RIVLGFLLVALLWKFDFPPFMILIIAILNDG 687
MK + Y +S + +V FL AL P +L + ++ DG
Sbjct: 755 NNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 801
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 133/279 (47%), Gaps = 35/279 (12%)
Query: 101 IVVLLFINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDEKWSEQ--EAEILVPGDIISI 158
I+++L N+ + +E KV R ++ S Q +A +VPGDI+ +
Sbjct: 94 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 153
Query: 159 KLGDIVPADARLL--EGDPLKIDQAALTGESLPVTK-------------NPGDEVFSGST 203
+GD VPAD R+L + L++DQ+ LTGES+ V K + + +FSG+
Sbjct: 154 AVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTN 213
Query: 204 CKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ-VGHFQKVLTAIGNFCICSIAVGMFIEII 262
G+ +V TGV T GK + +T Q Q+ L G ++ + + +
Sbjct: 214 IAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGE----QLSKVISLICV 269
Query: 263 VMWAIQRRSYRDGIDN-------------LLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQ 309
+W I + D + + L + IP +P V++ +A+G+ R++++
Sbjct: 270 AVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKK 329
Query: 310 GAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKSLI 348
AI + + ++E + V+CS KTGTLT N++SV K I
Sbjct: 330 NAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMFI 368
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 127/287 (44%), Gaps = 24/287 (8%)
Query: 425 KGAPEQIIDLCG----------LKGEMRRKAHQIIDNFA--ERGLRALGVGRQTVPEKTK 472
KGAPE +ID C + G ++ K +I + LR L + + P K +
Sbjct: 516 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 575
Query: 473 E------SEGSPWE----FVGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKE 522
E S +E FVG++ + DPPR + +I+ D G+ V MITGD
Sbjct: 576 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 635
Query: 523 TGRRLGM-GTNMYPSSSLLGQSKDESIASMPVEELIEKADGFAGVFPEHKYEIVKKLQER 581
RR+G+ G N + + + + E +A FA V P HK +IV+ LQ
Sbjct: 636 ICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSY 695
Query: 582 KHICGMTGDGVNDAPALKRXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIVSAVLTSRAIF 641
I MTGDGVNDAPALK+ VL + S IV+AV RAI+
Sbjct: 696 DEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIY 755
Query: 642 QRMKNYTIYAVSITI-RIVLGFLLVALLWKFDFPPFMILIIAILNDG 687
MK + Y +S + +V FL AL P +L + ++ DG
Sbjct: 756 NNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 802
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 134/279 (48%), Gaps = 35/279 (12%)
Query: 101 IVVLLFINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDEKWSEQ--EAEILVPGDIISI 158
I+++L N+ + +E KV R ++ S Q +A +VPGDI+ +
Sbjct: 95 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 154
Query: 159 KLGDIVPADARLL--EGDPLKIDQAALTGESLPVTK-------------NPGDEVFSGST 203
+GD VPAD R+L + L++DQ+ LTGES+ V K + + +FSG+
Sbjct: 155 AVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTN 214
Query: 204 CKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ-VGHFQKVLTAIGNFCICSIAVGMFIEII 262
G+ +V TGV T GK + +T Q Q+ L G ++ + + +
Sbjct: 215 IAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGE----QLSKVISLICV 270
Query: 263 VMWAIQRRSYRDGIDN-------------LLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQ 309
+W I + D + + L + IP +P V++ +A+G+ R++++
Sbjct: 271 AVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKK 330
Query: 310 GAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKSLI 348
AI + + ++E + V+CSDKTGTLT N++SV K I
Sbjct: 331 NAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 369
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 127/287 (44%), Gaps = 24/287 (8%)
Query: 425 KGAPEQIIDLCG----------LKGEMRRKAHQIIDNFA--ERGLRALGVGRQTVPEKTK 472
KGAPE +ID C + G ++ K +I + LR L + + P K +
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 473 E------SEGSPWE----FVGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKE 522
E S +E FVG++ + DPPR + +I+ D G+ V MITGD
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 634
Query: 523 TGRRLGM-GTNMYPSSSLLGQSKDESIASMPVEELIEKADGFAGVFPEHKYEIVKKLQER 581
RR+G+ G N + + + + E +A FA V P HK +IV+ LQ
Sbjct: 635 ICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSY 694
Query: 582 KHICGMTGDGVNDAPALKRXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIVSAVLTSRAIF 641
I MTGDGVNDAPALK+ VL + S IV+AV RAI+
Sbjct: 695 DEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIY 754
Query: 642 QRMKNYTIYAVSITI-RIVLGFLLVALLWKFDFPPFMILIIAILNDG 687
MK + Y +S + +V FL AL P +L + ++ DG
Sbjct: 755 NNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 801
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 134/279 (48%), Gaps = 35/279 (12%)
Query: 101 IVVLLFINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDEKWSEQ--EAEILVPGDIISI 158
I+++L N+ + +E KV R ++ S Q +A +VPGDI+ +
Sbjct: 94 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 153
Query: 159 KLGDIVPADARLL--EGDPLKIDQAALTGESLPVTK-------------NPGDEVFSGST 203
+GD VPAD R+L + L++DQ+ LTGES+ V K + + +FSG+
Sbjct: 154 AVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTN 213
Query: 204 CKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ-VGHFQKVLTAIGNFCICSIAVGMFIEII 262
G+ +V TGV T GK + +T Q Q+ L G ++ + + +
Sbjct: 214 IAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGE----QLSKVISLICV 269
Query: 263 VMWAIQRRSYRDGIDN-------------LLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQ 309
+W I + D + + L + IP +P V++ +A+G+ R++++
Sbjct: 270 AVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKK 329
Query: 310 GAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKSLI 348
AI + + ++E + V+CSDKTGTLT N++SV K I
Sbjct: 330 NAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 128/287 (44%), Gaps = 24/287 (8%)
Query: 425 KGAPEQIIDLCG----------LKGEMRRKAHQIIDNFA--ERGLRALGVGRQTVPEKTK 472
KGAPE +ID C + G ++ K +I + LR L + + P K +
Sbjct: 514 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 573
Query: 473 E------SEGSPWE----FVGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKE 522
E ++ +E FVG++ + DPPR + +I+ D G+ V MITGD
Sbjct: 574 EMVLDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 633
Query: 523 TGRRLGM-GTNMYPSSSLLGQSKDESIASMPVEELIEKADGFAGVFPEHKYEIVKKLQER 581
RR+G+ G N + + + + E +A FA V P HK +IV+ LQ
Sbjct: 634 ICRRIGIFGENEDVADRAYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQSF 693
Query: 582 KHICGMTGDGVNDAPALKRXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIVSAVLTSRAIF 641
I MTGDGVNDAPALK+ VL + S IV+AV RAI+
Sbjct: 694 DEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIY 753
Query: 642 QRMKNYTIYAVSITI-RIVLGFLLVALLWKFDFPPFMILIIAILNDG 687
MK + Y +S + +V FL AL P +L + ++ DG
Sbjct: 754 NNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 800
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 139/293 (47%), Gaps = 38/293 (12%)
Query: 101 IVVLLFINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDEKWSEQ--EAEILVPGDIISI 158
I+++L N+ + +E KV R ++ S Q +A +VPGDI+ +
Sbjct: 94 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 153
Query: 159 KLGDIVPADARLL--EGDPLKIDQAALTGESLPVTK-------------NPGDEVFSGST 203
+GD VPAD R+L + L++DQ+ LTGES+ V K + + +FSG+
Sbjct: 154 AVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTN 213
Query: 204 CKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ-VGHFQKVLTAIGNFCICSIAVGMFIEII 262
G+ +V TGV T GK + +T Q Q+ L G ++ + + +
Sbjct: 214 IAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEFGE----QLSKVISLICV 269
Query: 263 VMWAIQRRSYRDGIDN-------------LLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQ 309
+W I + D + + L + IP +P V++ +A+G+ R++++
Sbjct: 270 AVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKK 329
Query: 310 GAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKSLIEVFVKGTDSDGLLL 362
AI + + ++E + V+CSDKTGTLT N++SV K I + D D LL
Sbjct: 330 NAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI---IDRIDGDLCLL 379
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 110/474 (23%), Positives = 194/474 (40%), Gaps = 68/474 (14%)
Query: 132 PKTKVLRDEKWSEQEAEI--LVPGDIISIKLGDIVPADARLLEGDPLKIDQAALTGESLP 189
P++ E SE+E + + GD++ ++ G+ +P D + EG +D++ +TGE +P
Sbjct: 224 PESAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESMVTGEPIP 282
Query: 190 VTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DSTNQVGHFQKVLTAIGNF 248
V K +V + + G + G T + +V D+ Q++ + +
Sbjct: 283 VAKEASAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGW 342
Query: 249 CICSIAVGMFIEIIVMWAI--QRRSYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRL 306
+ ++ + + IV WA+ + + G+ + +LI P A+ +++ +G +
Sbjct: 343 FVPAVILVAVLSFIV-WALLGPQPALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKG 401
Query: 307 SQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKSLIEVFVKGTDSDGLLLAAAR 366
+Q G + K A+E M ++ L DKTGTLT + + + + FV+ A A
Sbjct: 402 AQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIVTDDFVEDNAL-----ALAA 456
Query: 367 ASRVENQDAIDASIVGMLADPKEARAGITEVHFLPFNPVDKRTAITYIDSNGDWHRTSKG 426
A +++ + +IV A K G E F + + +D H + G
Sbjct: 457 ALEHQSEHPLANAIV-HAAKEKGLSLGSVEA----FEAPTGKGVVGQVDG----HHVAIG 507
Query: 427 APEQIIDLCGLKGEMRRKAHQIIDNFAERGLRALGVGRQTVPEKTKESEGSPWEFVGLLP 486
+ + G + KA ++ RG + V V KT V LL
Sbjct: 508 NARLMQEHGGDNAPLFEKADEL------RG-KGASVMFMAVDGKT----------VALLV 550
Query: 487 LFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDE 546
+ DP + + ETI G+ + M+TGD + LG
Sbjct: 551 VEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLG------------------ 592
Query: 547 SIASMPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKR 600
I+K A + PE K IV +L+++ I M GDGVNDAPAL +
Sbjct: 593 ----------IKKV--VAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAK 634
>pdb|2O98|P Chain P, Structure Of The 14-3-3 H+-Atpase Plant Complex
pdb|2O98|Q Chain Q, Structure Of The 14-3-3 H+-Atpase Plant Complex
Length = 52
Score = 86.7 bits (213), Expect = 6e-17, Method: Composition-based stats.
Identities = 41/48 (85%), Positives = 45/48 (93%)
Query: 902 ELNELAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 949
ELN+LAE+AKRRAE+AR RELHTLKGHVESVVKLKGLDIETIQQ Y +
Sbjct: 5 ELNQLAEEAKRRAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYDI 52
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 121/526 (23%), Positives = 198/526 (37%), Gaps = 83/526 (15%)
Query: 136 VLRDEKWSEQEAEILVPGDIISIKLGDIVPADARLLEGDPLKIDQAALTGESLPVTKNPG 195
V+RD K E + GDI+ ++ G+ +P D ++EG+ +D++ ++GE +PV K+ G
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 273
Query: 196 DEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DSTNQVGHFQKVLTAIGNFCICSIA 254
DEVF + G ++ G T + LV D+ Q++ + + I ++
Sbjct: 274 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVL 333
Query: 255 VGMFIEIIVMWAIQRRSYRDGIDNLLVLLIGGIP----IAMPTVLSVTMAIGSHRLSQQG 310
+ I + I L+ +L+ P +A PT L+V M G ++ G
Sbjct: 334 LVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKG----AELG 389
Query: 311 AITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKSLIEVFVKGTDSDGLLLAAARASRV 370
+ K A+E + + DKTGTLT K V V + G + + L LAA R
Sbjct: 390 ILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDL---VPLNGDERELLRLAAIAERRS 446
Query: 371 ENQDAIDASIVGMLADPKEARAGITEVHFLPFNPVDKRTAITYIDSNGDWHRTSKGAPEQ 430
E+ P + A+ + G+ + A E
Sbjct: 447 EH----------------------------PIAEAIVKKALEHGIELGEPEKVEVIAGEG 478
Query: 431 IIDLCGLKGEMR--RKAHQIIDNFAERGLRALGVGRQT--VPEKTKESEGSPWEFVGLLP 486
++ L G R + N E L L +T + + EG ++
Sbjct: 479 VVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEG-------IIA 531
Query: 487 LFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDE 546
+ D + + ++ +G+ V MITGD + R L + D
Sbjct: 532 VSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL---------------DL 576
Query: 547 SIASMPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKRXXXXXX 606
IA V P K E VKKLQ K + GDG+NDAPAL +
Sbjct: 577 VIAE---------------VLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGIA 620
Query: 607 XXXXXXXXXXXXXXVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAV 652
VL L +V+A+ SR ++K +A+
Sbjct: 621 VGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWAL 666
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 120/526 (22%), Positives = 198/526 (37%), Gaps = 83/526 (15%)
Query: 136 VLRDEKWSEQEAEILVPGDIISIKLGDIVPADARLLEGDPLKIDQAALTGESLPVTKNPG 195
V+RD K E + GDI+ ++ G+ +P D ++EG+ +D++ ++GE +PV K+ G
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 195
Query: 196 DEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DSTNQVGHFQKVLTAIGNFCICSIA 254
DEVF + G ++ G T + LV D+ Q++ + + I ++
Sbjct: 196 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVL 255
Query: 255 VGMFIEIIVMWAIQRRSYRDGIDNLLVLLIGGIP----IAMPTVLSVTMAIGSHRLSQQG 310
+ I + I L+ +L+ P +A PT L+V M G ++ G
Sbjct: 256 LVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKG----AELG 311
Query: 311 AITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKSLIEVFVKGTDSDGLLLAAARASRV 370
+ K A+E + + DKTGTLT K V V + G + + L LAA R
Sbjct: 312 ILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDL---VPLNGDERELLRLAAIAERRS 368
Query: 371 ENQDAIDASIVGMLADPKEARAGITEVHFLPFNPVDKRTAITYIDSNGDWHRTSKGAPEQ 430
E+ P + A+ + G+ + A E
Sbjct: 369 EH----------------------------PIAEAIVKKALEHGIELGEPEKVEVIAGEG 400
Query: 431 IIDLCGLKGEMR--RKAHQIIDNFAERGLRALGVGRQT--VPEKTKESEGSPWEFVGLLP 486
++ L G R + N E L L +T + + EG ++
Sbjct: 401 VVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEG-------IIA 453
Query: 487 LFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDE 546
+ D + + ++ +G+ V MITGD + R L + D
Sbjct: 454 VSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL---------------DL 498
Query: 547 SIASMPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKRXXXXXX 606
IA + P K E VKKLQ K + GDG+NDAPAL +
Sbjct: 499 VIAEV---------------LPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGIA 542
Query: 607 XXXXXXXXXXXXXXVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAV 652
VL L +V+A+ SR ++K +A+
Sbjct: 543 VGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWAL 588
>pdb|3M50|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
EPIBESTAT
pdb|3M51|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
PYRROLIDO
pdb|4DX0|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY A
PYRAZOLE Derivative
Length = 31
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/30 (86%), Positives = 28/30 (93%)
Query: 920 RELHTLKGHVESVVKLKGLDIETIQQHYTV 949
RELHTLKGHVE+VVKLKGLDIETIQQ Y +
Sbjct: 2 RELHTLKGHVEAVVKLKGLDIETIQQSYDI 31
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 39/149 (26%)
Query: 457 LRALGVGRQTVPEKTKESEGSPWEFV-------GLLPLFDPPRHDSAETIRRALDLGVNV 509
+R LG+ EK K+ +G F+ G++ L D R +S E I + +G+
Sbjct: 105 IRELGIKTDESVEKLKQ-QGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKC 163
Query: 510 KMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASMPVEELIEKADGFAGVFPE 569
M+TGD + K LG+ D FA V P
Sbjct: 164 MMLTGDNRFVAKWVAEELGLD------------------------------DYFAEVLPH 193
Query: 570 HKYEIVKKLQERKHICGMTGDGVNDAPAL 598
K E VK++Q+ K++ M GDGVNDAPAL
Sbjct: 194 EKAEKVKEVQQ-KYVTAMVGDGVNDAPAL 221
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 39/149 (26%)
Query: 457 LRALGVGRQTVPEKTKESEGSPWEFV-------GLLPLFDPPRHDSAETIRRALDLGVNV 509
+R LG+ EK K+ +G F+ G++ L D R +S E I + +G+
Sbjct: 105 IRELGIKTDESVEKLKQ-QGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKC 163
Query: 510 KMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASMPVEELIEKADGFAGVFPE 569
M+TGD + K LG+ D FA V P
Sbjct: 164 MMLTGDNRFVAKWVAEELGLD------------------------------DYFAEVLPH 193
Query: 570 HKYEIVKKLQERKHICGMTGDGVNDAPAL 598
K E VK++Q+ K++ M GDGVNDAPAL
Sbjct: 194 EKAEKVKEVQQ-KYVTAMVGDGVNDAPAL 221
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 146 EAEILVPGDIISIKLGDIVPADARLLEGDPLKIDQAALTGESLPVTKNPGDEVFSGSTCK 205
+ E++ GDII + G P D R++EG + +D++ +TGE++PV K PG V +GS +
Sbjct: 38 DVELVQRGDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEAMPVAKKPGSTVIAGSINQ 96
Query: 206 QGEIEAVVIATGVHTFFGKAAHLVD 230
G + G T + LV+
Sbjct: 97 NGSLLICATHVGADTTLSQIVKLVE 121
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 136 VLRDEKWSEQEAEILVPGDIISIKLGDIVPADARLLEGDPLKIDQAALTGESLPVTKNPG 195
V+RD K E + GDI+ ++ G+ +P D ++EG+ +D++ ++GE +PV K+ G
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 74
Query: 196 DEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVD 230
DEVF + G ++ G T + LV+
Sbjct: 75 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVE 109
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 31/163 (19%)
Query: 483 GLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQ 542
G++ + D + + ++ +G+ V MITGD + R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 543 SKDESIASMPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKRXX 602
+L+ A V P K E VKKLQ K + GDG+NDAPAL +
Sbjct: 203 ------------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQAD 244
Query: 603 XXXXXXXXXXXXXXXXXXVLTEPGLSVIVSAVLTSRAIFQRMK 645
VL L +V+A+ SR ++K
Sbjct: 245 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 31/163 (19%)
Query: 483 GLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQ 542
G++ + D + + ++ +G+ V MITGD + R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 543 SKDESIASMPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKRXX 602
+L+ A V P K E VKKLQ K + GDG+NDAPAL +
Sbjct: 203 ------------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQAD 244
Query: 603 XXXXXXXXXXXXXXXXXXVLTEPGLSVIVSAVLTSRAIFQRMK 645
VL L +V+A+ SR ++K
Sbjct: 245 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 563 FAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKRXXXXXXXXXXXXXXXXXXXXVL 622
A V P K E VKKLQ K + GDG+NDAPAL + VL
Sbjct: 186 IAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVL 244
Query: 623 TEPGLSVIVSAVLTSR 638
L +V+A+ SR
Sbjct: 245 IRDDLRDVVAAIQLSR 260
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 563 FAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPAL 598
A V P K E VKKLQ K + GDG+NDAPAL
Sbjct: 65 IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPAL 99
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 26/128 (20%)
Query: 389 EARAGITEVHFLPFNPVDKRTAITYIDSNGDWHR---TSKGAPEQIIDLCG---LKGEMR 442
E R T++ +PFN +K + + N + KGAPE+I+D C L G+ +
Sbjct: 87 EMREKYTKIVEIPFNSTNKYQLSIHKNPNASEPKHLLVMKGAPERILDRCSSILLHGKEQ 146
Query: 443 RKAHQIIDNFAER-------GLRALGVGRQTVPEKTKESEGSPWE------------FVG 483
++ D F G R LG +P++ + EG ++ FVG
Sbjct: 147 PLDEELKDAFQNAYLELGGLGERVLGFCHLLLPDE-QFPEGFQFDTDEVNFPVDNLCFVG 205
Query: 484 LLPLFDPP 491
L+ + DPP
Sbjct: 206 LISMIDPP 213
>pdb|3VPE|A Chain A, Crystal Structure Of Metallo-beta-lactamase Smb-1
pdb|3VQZ|A Chain A, Crystal Structure Of Metallo-beta-lactamase, Smb-1, In A
Complex With Mercaptoacetic Acid
Length = 262
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 11/117 (9%)
Query: 166 ADARLLEGDPLKIDQAALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKA 225
AD L++ PL + A G + G ++ +C+QG+ + VV A + +
Sbjct: 130 ADGELVKLGPLAVKAHATPGHT------EGGITWTWQSCEQGKCKDVVFADSLTAVSADS 183
Query: 226 AHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMFIEIIVMWAIQRRSYRDG----IDN 278
D V + A+ C IA+ E+ MW Q+R+ ++G +DN
Sbjct: 184 YRFSDHPEVVASLRGSFEAVEKLS-CDIAIAAHPEVNDMWTRQQRAAKEGNSAYVDN 239
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 400 LPFNPVDKRTAITYIDSNGDWHRTSKGAPEQIIDLCG----------LKGEMRRKAHQII 449
+PF+ +R ++ ++ KGA ++I+++C L M RK ++
Sbjct: 62 IPFDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVT 121
Query: 450 DNFAERGLRALGVGRQTVPEK 470
D +GLR + V + +P +
Sbjct: 122 DTLNRQGLRVVAVATKYLPAR 142
>pdb|4D8O|A Chain A, Crystal Structure Of The Ankyrin-B Zu5-Zu5-Upa-Dd Tandem
Length = 581
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 76 EAAAIMAIVLANGGGKPPDWPDFVGIVVLLFINSTISF 113
+A + + GG P W D G L F+N +SF
Sbjct: 267 DAPTLRLLCSITGGTTPAQWEDITGTTPLTFVNECVSF 304
>pdb|2IGS|A Chain A, Crystal Structure Of The Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2IGS|B Chain B, Crystal Structure Of The Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2IGS|C Chain C, Crystal Structure Of The Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2IGS|D Chain D, Crystal Structure Of The Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2IGS|E Chain E, Crystal Structure Of The Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2IGS|F Chain F, Crystal Structure Of The Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2IGS|G Chain G, Crystal Structure Of The Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2IGS|H Chain H, Crystal Structure Of The Protein Of Unknown Function From
Pseudomonas Aeruginosa
Length = 219
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 841 FVIRYAQSGKAWDNLLQNKTAFTTKKDYGKGEREAQWAMAQRTMHGLQTSESTVNEK 897
FV AQ+ +AWD L+ F D K +++ +AQ +G+ VNEK
Sbjct: 31 FVFPEAQTIEAWDIPLRLHPEFIPGGDISKADQQYSTLLAQEIANGVTIGFRXVNEK 87
>pdb|3FDJ|A Chain A, The Structure Of A Degv Family Protein From Eubacterium
Eligens
Length = 278
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 304 HRLSQQGAITKRMTAIEEMAGMDVLCSDKT-GTL-TLNKLSVDKSLIEVFVKGTDSDGLL 361
H L+Q G ++K + + E+ G+ V+ + + GTL + K DK L+ D G
Sbjct: 163 HNLAQNGRVSKVVASAAEVLGISVIGTASSHGTLEAIGKCRGDKKLLVKLQALLDDAGYE 222
Query: 362 LAAARASRVENQDAIDASIVGMLADPKEARAGITEV 397
R VEN+ D +AD + G T+V
Sbjct: 223 GGKLRICHVENEALADK-----IADXIKQAYGTTDV 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,532,843
Number of Sequences: 62578
Number of extensions: 1006607
Number of successful extensions: 2220
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2101
Number of HSP's gapped (non-prelim): 68
length of query: 949
length of database: 14,973,337
effective HSP length: 108
effective length of query: 841
effective length of database: 8,214,913
effective search space: 6908741833
effective search space used: 6908741833
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)