BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041456
(92 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LB10|CLPR4_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 4,
chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1
Length = 305
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/82 (75%), Positives = 68/82 (82%)
Query: 1 VIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLY 60
VIPF+ G+A EQPPPDLASYL+KNRIVYLGMS VPSV ELILAEFLYLQYED EKPIYLY
Sbjct: 90 VIPFSKGSAHEQPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLY 149
Query: 61 LNSTGTTEVGSFLCHALVFFQI 82
+NSTGTT+ G L + F I
Sbjct: 150 INSTGTTKNGEKLGYDTEAFAI 171
>sp|Q8L770|CLPR3_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 3,
chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1
Length = 330
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/55 (61%), Positives = 44/55 (80%)
Query: 13 PPPDLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTT 67
PPPDL S L RIVY+GM VP+V EL++AE +YLQ+ D ++PIY+Y+NSTGTT
Sbjct: 118 PPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTT 172
>sp|P74466|CLPR_SYNY3 Putative ATP-dependent Clp protease proteolytic subunit-like
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=clpR
PE=3 SV=1
Length = 225
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 10/69 (14%)
Query: 9 AWEQPPPDLASYLYKNRIVYLGMSFVPS----------VRELILAEFLYLQYEDAEKPIY 58
A++ PPPDL S L K RIVYLGM S V +LI+A+ LYLQ++D +KPIY
Sbjct: 15 AFKTPPPDLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDDPDKPIY 74
Query: 59 LYLNSTGTT 67
Y+NSTGT+
Sbjct: 75 FYINSTGTS 83
>sp|Q9XJ35|CLPR1_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 1,
chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1
Length = 387
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/59 (55%), Positives = 43/59 (72%), Gaps = 3/59 (5%)
Query: 11 EQP---PPDLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGT 66
E+P PPDL S L RI YLGM VP+V EL++A+F++L Y++ KPIYLY+NS GT
Sbjct: 163 ERPRTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGT 221
>sp|Q9L4P4|CLPR_SYNE7 Putative ATP-dependent Clp protease proteolytic subunit-like
OS=Synechococcus elongatus (strain PCC 7942) GN=clpR
PE=3 SV=1
Length = 228
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 10/55 (18%)
Query: 23 KNRIVYLGMSFVPS----------VRELILAEFLYLQYEDAEKPIYLYLNSTGTT 67
K RI+YLGM S V ELI+A+ LYL++++ EKPIY Y+NSTGT+
Sbjct: 31 KERIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPEKPIYFYINSTGTS 85
>sp|Q2JV68|CLPP2_SYNJA ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1
Length = 200
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTT 67
D+ S L ++RI++LG + LI+A+ LYL+ ED EK IYLY+NS G +
Sbjct: 17 DIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGS 68
>sp|Q2JIP1|CLPP2_SYNJB ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain JA-2-3B'a(2-13)) GN=clpP2 PE=3 SV=1
Length = 200
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTT 67
D+ S L ++RI++LG + LI+A+ LYL+ ED EK IYLY+NS G +
Sbjct: 17 DIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGS 68
>sp|B9DJL4|CLPP_STACT ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
carnosus (strain TM300) GN=clpP PE=3 SV=1
Length = 194
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG + +V I+++ L+LQ +DAEK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGF 75
>sp|Q49VZ2|CLPP_STAS1 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=clpP PE=3 SV=1
Length = 194
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG +V I+++ L+LQ +DAEK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGF 75
>sp|B9EAG5|CLPP_MACCJ ATP-dependent Clp protease proteolytic subunit OS=Macrococcus
caseolyticus (strain JCSC5402) GN=clpP PE=3 SV=1
Length = 194
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTT 67
D+ S L K+RI+ LG + +V I+++ L+LQ +DAEK IYLY+NS G +
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGS 70
>sp|Q3A3X5|CLPP_PELCD ATP-dependent Clp protease proteolytic subunit OS=Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1) GN=clpP PE=3
SV=1
Length = 194
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTG 65
D+ S L K+RI++LG + V LI+A+ L+L+ ED EK I+LY+NS G
Sbjct: 19 DIFSRLLKDRIIFLGGAVDDQVANLIIAQMLFLESEDPEKEIFLYINSPG 68
>sp|Q4L4J5|CLPP_STAHJ ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=clpP PE=3 SV=1
Length = 195
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG + +V I+++ L+LQ +D+EK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
>sp|Q81CH1|CLPP1_BACCR ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus
cereus (strain ATCC 14579 / DSM 31) GN=clpP1 PE=3 SV=1
Length = 193
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ +G V ++A+ L+L+ EDAEK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIYLYINSPGGSTTAGF 75
>sp|B9M0Y1|CLPP_GEOSF ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp.
(strain FRC-32) GN=clpP PE=3 SV=1
Length = 199
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 8 TAWEQPPPDLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTG 65
T + D+ S L K+RI++LG + +V L++A+ L+L+ ED +K I+LY+NS G
Sbjct: 10 TGRGERSYDIYSRLLKDRIIFLGGAIDDTVSNLVIAQLLFLEAEDPDKDIHLYINSPG 67
>sp|A5GFA0|CLPP_GEOUR ATP-dependent Clp protease proteolytic subunit OS=Geobacter
uraniireducens (strain Rf4) GN=clpP PE=3 SV=1
Length = 199
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTG 65
D+ S L K+RIV+LG + ++ L++A+ L+L+ ED +K I+LY+NS G
Sbjct: 18 DIYSRLLKDRIVFLGGAIDDAISNLVIAQLLFLEAEDPDKDIHLYINSPG 67
>sp|Q8CTE0|CLPP_STAES ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=clpP PE=3 SV=1
Length = 194
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG +V I+++ L+LQ +D+EK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
>sp|Q5HQW0|CLPP_STAEQ ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=clpP PE=3
SV=1
Length = 194
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG +V I+++ L+LQ +D+EK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
>sp|P63786|CLPP_STAAW ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain MW2) GN=clpP PE=1 SV=1
Length = 195
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG +V I+++ L+LQ +D+EK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
>sp|A8Z045|CLPP_STAAT ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain USA300 / TCH1516) GN=clpP PE=3 SV=1
Length = 195
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG +V I+++ L+LQ +D+EK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
>sp|Q6GB62|CLPP_STAAS ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain MSSA476) GN=clpP PE=3 SV=1
Length = 195
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG +V I+++ L+LQ +D+EK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
>sp|Q6GIM3|CLPP_STAAR ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain MRSA252) GN=clpP PE=3 SV=1
Length = 195
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG +V I+++ L+LQ +D+EK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
>sp|P99089|CLPP_STAAN ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain N315) GN=clpP PE=1 SV=1
Length = 195
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG +V I+++ L+LQ +D+EK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
>sp|P63785|CLPP_STAAM ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=clpP PE=1 SV=1
Length = 195
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG +V I+++ L+LQ +D+EK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
>sp|A6QF76|CLPP_STAAE ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain Newman) GN=clpP PE=3 SV=1
Length = 195
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG +V I+++ L+LQ +D+EK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
>sp|Q5HHQ0|CLPP_STAAC ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain COL) GN=clpP PE=3 SV=1
Length = 195
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG +V I+++ L+LQ +D+EK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
>sp|Q2YSF8|CLPP_STAAB ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain bovine RF122 / ET3-1) GN=clpP PE=3 SV=1
Length = 195
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG +V I+++ L+LQ +D+EK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
>sp|A5IQX2|CLPP_STAA9 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain JH9) GN=clpP PE=3 SV=1
Length = 195
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG +V I+++ L+LQ +D+EK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
>sp|Q2G036|CLPP_STAA8 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain NCTC 8325) GN=clpP PE=1 SV=1
Length = 195
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG +V I+++ L+LQ +D+EK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
>sp|Q2FIM5|CLPP_STAA3 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain USA300) GN=clpP PE=3 SV=1
Length = 195
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG +V I+++ L+LQ +D+EK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
>sp|A6TZP7|CLPP_STAA2 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain JH1) GN=clpP PE=3 SV=1
Length = 195
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG +V I+++ L+LQ +D+EK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
>sp|A7WZR9|CLPP_STAA1 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain Mu3 / ATCC 700698) GN=clpP PE=3 SV=1
Length = 195
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ LG +V I+++ L+LQ +D+EK IYLY+NS G + F
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
>sp|B5EI27|CLPP_GEOBB ATP-dependent Clp protease proteolytic subunit OS=Geobacter
bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)
GN=clpP PE=3 SV=1
Length = 199
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 8 TAWEQPPPDLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTG 65
T + D+ S L K+RI++LG +V L++A+ L+L+ ED +K I+LY+NS G
Sbjct: 10 TGRGERSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPG 67
>sp|Q6HHU9|CLPP1_BACHK ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus
thuringiensis subsp. konkukian (strain 97-27) GN=clpP1
PE=3 SV=1
Length = 193
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RIV +G V ++A+ L+L+ EDAEK I+LY+NS G + F
Sbjct: 19 DIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGF 75
>sp|Q81PL4|CLPP1_BACAN ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus
anthracis GN=clpP1 PE=3 SV=1
Length = 193
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RIV +G V ++A+ L+L+ EDAEK I+LY+NS G + F
Sbjct: 19 DIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGF 75
>sp|Q2RL31|CLPP_MOOTA ATP-dependent Clp protease proteolytic subunit OS=Moorella
thermoacetica (strain ATCC 39073) GN=clpP PE=3 SV=1
Length = 199
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTT 67
D+ S L K+RI++LG + V L++A+ L+L+ ED +K I+LY+NS G +
Sbjct: 20 DIYSRLLKDRIIFLGSAIDDHVANLVIAQMLFLEAEDPDKDIHLYINSPGGS 71
>sp|Q24S49|CLPP2_DESHY ATP-dependent Clp protease proteolytic subunit 2
OS=Desulfitobacterium hafniense (strain Y51) GN=clpP2
PE=3 SV=1
Length = 202
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTT 67
D+ S L K+RI++LG V L++A+ L+L+ ED EK I+LY+NS G +
Sbjct: 20 DIYSRLLKDRIIFLGGPVTDDVANLVVAQMLFLEAEDPEKDIFLYINSPGGS 71
>sp|C6E2T0|CLPP_GEOSM ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp.
(strain M21) GN=clpP PE=3 SV=1
Length = 199
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 8 TAWEQPPPDLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTG 65
T + D+ S L K+RI++LG +V L++A+ L+L+ ED +K I+LY+NS G
Sbjct: 10 TGRGERSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPG 67
>sp|Q8YXH5|CLPP1_NOSS1 ATP-dependent Clp protease proteolytic subunit 1 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=clpP1 PE=3 SV=1
Length = 204
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTT 67
D+ S L + RIV+LG ++ LI+A+ L+L ED EK IYLY+NS G +
Sbjct: 18 DIYSRLLRERIVFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGS 69
>sp|A4J7L9|CLPP_DESRM ATP-dependent Clp protease proteolytic subunit
OS=Desulfotomaculum reducens (strain MI-1) GN=clpP PE=3
SV=1
Length = 195
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTG 65
D+ S L K+RI+++G + L++A+FL+L+ ED EK I+LY+NS G
Sbjct: 20 DIYSRLLKDRIIFIGGPIDDHIANLVIAQFLFLEAEDPEKDIHLYINSPG 69
>sp|B3E1Z4|CLPP_GEOLS ATP-dependent Clp protease proteolytic subunit OS=Geobacter
lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=clpP
PE=3 SV=1
Length = 197
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTG 65
D+ S L K RIV+LG V +L++A+ L+L+ ED +K I+LY+NS G
Sbjct: 18 DIYSRLLKERIVFLGGEINDQVADLVIAQLLFLEAEDPDKDIHLYINSPG 67
>sp|Q63AG0|CLPP1_BACCZ ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus
cereus (strain ZK / E33L) GN=clpP1 PE=3 SV=1
Length = 193
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ +G V ++A+ L+L+ EDAEK I+LY+NS G + F
Sbjct: 19 DIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGF 75
>sp|Q67SK0|CLPP1_SYMTH ATP-dependent Clp protease proteolytic subunit 1
OS=Symbiobacterium thermophilum (strain T / IAM 14863)
GN=clpP1 PE=3 SV=1
Length = 202
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTT 67
D+ S L K+RIV+LG V +++A+ L+L+ ED +KP+ LY+NS G +
Sbjct: 20 DIYSRLLKDRIVFLGTPIDDQVANVVIAQLLFLESEDPDKPVNLYINSPGGS 71
>sp|B5YI38|CLPP_THEYD ATP-dependent Clp protease proteolytic subunit
OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303
/ DSM 11347 / YP87) GN=clpP PE=3 SV=1
Length = 195
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTG 65
D+ S L K+RI+++G V +++A+ L+LQ ED EK I++Y+NS G
Sbjct: 19 DIYSRLLKDRIIFIGTEINDHVANVVIAQLLFLQTEDPEKDIHIYINSPG 68
>sp|Q3MFR5|CLPP1_ANAVT ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=clpP1 PE=3
SV=1
Length = 204
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTT 67
D+ S L + RI++LG ++ LI+A+ L+L ED EK IYLY+NS G +
Sbjct: 18 DIYSRLLRERIIFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGS 69
>sp|B0K533|CLPP_THEPX ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter sp. (strain X514) GN=clpP PE=3
SV=1
Length = 195
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RIV+LG + L++A+ L+L+ ED +K I+LY+NS G + F
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGF 75
>sp|B0KBA4|CLPP_THEP3 ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=clpP PE=3 SV=1
Length = 195
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RIV+LG + L++A+ L+L+ ED +K I+LY+NS G + F
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGF 75
>sp|A1AN85|CLPP_PELPD ATP-dependent Clp protease proteolytic subunit OS=Pelobacter
propionicus (strain DSM 2379) GN=clpP PE=3 SV=1
Length = 199
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTG 65
D+ S L K RI++LG V LI+A+ L+L+ ED +K I+LY+NS G
Sbjct: 18 DIYSRLLKERIIFLGGGIDDQVANLIIAQLLFLEAEDPDKDIHLYINSPG 67
>sp|Q736T1|CLPP1_BACC1 ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus
cereus (strain ATCC 10987) GN=clpP1 PE=3 SV=1
Length = 193
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RI+ +G V ++A+ L+L+ EDAEK I+LY+NS G + F
Sbjct: 19 DIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTXAGF 75
>sp|A4XHW0|CLPP_CALS8 ATP-dependent Clp protease proteolytic subunit
OS=Caldicellulosiruptor saccharolyticus (strain ATCC
43494 / DSM 8903) GN=clpP PE=3 SV=1
Length = 195
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 16 DLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72
D+ S L K+RIV L + LI+A+ L+L+ ED +K IYLY+NS G + F
Sbjct: 20 DIYSRLLKDRIVILSGEITDDIASLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGF 76
>sp|Q7UK66|CLPP2_RHOBA ATP-dependent Clp protease proteolytic subunit 2
OS=Rhodopirellula baltica (strain SH1) GN=clpP2 PE=3
SV=1
Length = 195
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 1 VIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYL 59
VIP+ E+ D+ S L K+RI++LG + ++A+ L+LQ +D +K I++
Sbjct: 3 VIPYVVESNGREERTYDIYSRLLKDRIIFLGQQVDDQISNALVAQMLFLQADDPKKDIHM 62
Query: 60 YLNSTGTT 67
Y+NS G +
Sbjct: 63 YINSPGGS 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,660,911
Number of Sequences: 539616
Number of extensions: 1254126
Number of successful extensions: 3523
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2783
Number of HSP's gapped (non-prelim): 744
length of query: 92
length of database: 191,569,459
effective HSP length: 62
effective length of query: 30
effective length of database: 158,113,267
effective search space: 4743398010
effective search space used: 4743398010
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)