Query 041456
Match_columns 92
No_of_seqs 103 out of 1054
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 12:07:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041456.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041456hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gm2_A ATP-dependent CLP prote 100.0 4.4E-30 1.5E-34 187.9 7.9 83 8-90 12-104 (205)
2 3p2l_A ATP-dependent CLP prote 99.9 1.2E-26 4.2E-31 168.4 8.6 90 1-90 6-96 (201)
3 3qwd_A ATP-dependent CLP prote 99.9 2.2E-26 7.7E-31 167.2 8.8 90 1-90 3-93 (203)
4 1tg6_A Putative ATP-dependent 99.9 4.3E-26 1.5E-30 173.0 8.9 88 2-89 59-147 (277)
5 1yg6_A ATP-dependent CLP prote 99.9 2.5E-24 8.5E-29 153.8 9.9 88 2-89 3-91 (193)
6 1y7o_A ATP-dependent CLP prote 99.9 1.6E-24 5.4E-29 158.1 8.2 88 2-89 22-110 (218)
7 2f6i_A ATP-dependent CLP prote 99.9 8.8E-23 3E-27 149.0 9.3 82 7-89 22-103 (215)
8 2cby_A ATP-dependent CLP prote 99.9 5.6E-23 1.9E-27 148.6 7.5 88 2-89 4-92 (208)
9 3viv_A 441AA long hypothetical 99.1 1.2E-10 3.9E-15 85.8 6.7 64 25-89 11-74 (230)
10 3bf0_A Protease 4; bacterial, 98.6 1.2E-08 4.2E-13 82.9 2.9 74 15-91 49-127 (593)
11 3rst_A Signal peptide peptidas 97.2 0.00038 1.3E-08 50.4 4.2 57 26-82 7-75 (240)
12 3bf0_A Protease 4; bacterial, 96.8 0.00052 1.8E-08 55.7 2.4 57 26-82 305-368 (593)
13 2bzr_A Propionyl-COA carboxyla 71.2 8.1 0.00028 31.3 5.8 56 31-88 361-426 (548)
14 1x0u_A Hypothetical methylmalo 60.3 16 0.00054 29.3 5.5 55 29-85 337-401 (522)
15 2f9y_A Acetyl-COA carboxylase, 59.8 9.8 0.00033 28.9 4.0 45 25-71 147-191 (339)
16 2f9i_A Acetyl-coenzyme A carbo 54.9 12 0.00041 28.2 3.8 44 26-71 134-177 (327)
17 2pd2_A Hypothetical protein ST 42.4 26 0.00089 21.1 3.3 52 25-78 2-54 (108)
18 2f9y_B Acetyl-coenzyme A carbo 39.1 38 0.0013 25.1 4.3 43 28-72 129-171 (304)
19 3h9d_A ATG8, microtubule-assoc 36.2 60 0.0021 21.1 4.5 39 22-63 47-85 (119)
20 2f9i_B Acetyl-coenzyme A carbo 36.0 76 0.0026 23.3 5.5 43 29-73 133-175 (285)
21 1l1s_A Hypothetical protein MT 35.1 36 0.0012 20.8 3.1 46 23-68 3-48 (113)
22 3u5e_m 60S ribosomal protein L 33.5 15 0.00051 23.4 1.1 49 23-78 40-88 (128)
23 2z06_A Putative uncharacterize 32.1 1.4E+02 0.0049 21.5 6.6 59 25-88 2-63 (252)
24 3gf3_A Glutaconyl-COA decarbox 31.9 1.3E+02 0.0046 24.5 6.7 64 23-88 379-452 (588)
25 3u9r_B MCC beta, methylcrotony 31.8 83 0.0028 25.5 5.5 55 31-87 366-430 (555)
26 1pix_A Glutaconyl-COA decarbox 29.0 1.3E+02 0.0045 24.4 6.2 61 25-87 379-449 (587)
27 2x24_A Acetyl-COA carboxylase; 28.5 1.3E+02 0.0046 25.5 6.3 64 22-87 452-526 (793)
28 3m5k_A Putative NADH dehydroge 28.4 65 0.0022 20.8 3.7 48 14-61 5-54 (172)
29 3g14_A Nitroreductase family p 26.0 87 0.003 20.6 4.0 49 15-63 2-52 (193)
30 4gdk_A Ubiquitin-like protein 26.0 1E+02 0.0035 18.9 4.0 53 22-78 19-74 (91)
31 3bl4_A Uncharacterized protein 24.1 71 0.0024 20.7 3.2 38 26-66 24-62 (124)
32 3k6h_A Nitroreductase family p 23.9 89 0.0031 20.6 3.8 48 14-61 8-59 (197)
33 2ahq_A Sigma-54, RNA polymeras 23.8 65 0.0022 19.4 2.7 27 30-58 13-39 (76)
34 1ywq_A Nitroreductase family p 23.6 1.3E+02 0.0045 19.2 4.5 48 14-61 5-55 (200)
35 3h4o_A Nitroreductase family p 22.5 1.3E+02 0.0044 20.0 4.4 49 13-61 18-68 (191)
36 4dn2_A Nitroreductase; structu 22.2 1.5E+02 0.0052 19.7 4.7 56 8-63 16-73 (208)
37 1t71_A Phosphatase, conserved 21.8 1.1E+02 0.0036 22.5 4.1 62 23-88 4-69 (281)
38 2f5x_A BUGD; periplasmic bindi 21.8 43 0.0015 24.5 1.9 31 48-78 10-42 (312)
39 1vrg_A Propionyl-COA carboxyla 21.4 2.1E+02 0.0072 22.8 6.0 53 31-85 344-406 (527)
40 3gt0_A Pyrroline-5-carboxylate 21.3 64 0.0022 22.0 2.7 45 32-76 194-244 (247)
41 1on3_A Methylmalonyl-COA carbo 20.8 2.2E+02 0.0075 22.7 6.0 56 30-87 339-404 (523)
No 1
>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A
Probab=99.96 E-value=4.4e-30 Score=187.87 Aligned_cols=83 Identities=29% Similarity=0.442 Sum_probs=72.0
Q ss_pred CCCCCCCcchHHhhhcCceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCC----------CcchhhhhHHHH
Q 041456 8 TAWEQPPPDLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTG----------TTEVGSFLCHAL 77 (92)
Q Consensus 8 ~~~~~~~~dl~~~l~~~RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpG----------G~v~aglaIyD~ 77 (92)
...+++|.|+|++||++|+|||+++||+++|+++++||++|+++||++||++|||||| |+|++|++|||+
T Consensus 12 ~~~~~~~~di~s~Ll~~Riifl~~~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIyd~ 91 (205)
T 4gm2_A 12 SGRENLYFQGPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDV 91 (205)
T ss_dssp ----------CHHHHTTTEEEECSCCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHhcCCEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHHHHHHHHH
Confidence 3456899999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred Hhhcccccceeee
Q 041456 78 VFFQISSINASEY 90 (92)
Q Consensus 78 m~~v~~~v~t~~~ 90 (92)
|+++++||.|+|-
T Consensus 92 m~~~~~~V~t~~~ 104 (205)
T 4gm2_A 92 INYISSDVYTYCL 104 (205)
T ss_dssp HHHSSSCEEEEEE
T ss_pred HHhcCCCEEEEEE
Confidence 9999999999984
No 2
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=99.93 E-value=1.2e-26 Score=168.41 Aligned_cols=90 Identities=28% Similarity=0.400 Sum_probs=80.9
Q ss_pred Ccccc-cCCCCCCCCcchHHhhhcCceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcchhhhhHHHHHh
Q 041456 1 VIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSFLCHALVF 79 (92)
Q Consensus 1 ~~~~~-~~~~~~~~~~dl~~~l~~~RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~v~aglaIyD~m~ 79 (92)
++|.+ ++++.+++..|+|++||++|+|||+|+|++++++.++++|++|+.+++.++|.+|||||||++.+|++|||+|+
T Consensus 6 ~~p~~~~~~~~~~~~~d~~~~l~~~riI~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~ 85 (201)
T 3p2l_A 6 LVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQ 85 (201)
T ss_dssp CSSEECCC-----CCEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHH
T ss_pred cCCeeeeeCCCCCcccCHHHHhhCCCEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHH
Confidence 36776 77888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccceeee
Q 041456 80 FQISSINASEY 90 (92)
Q Consensus 80 ~v~~~v~t~~~ 90 (92)
.+++||.|+|.
T Consensus 86 ~~~~~v~t~~~ 96 (201)
T 3p2l_A 86 FIKPDVSTICI 96 (201)
T ss_dssp HSSSCEEEEEE
T ss_pred HhCCCeEEEEc
Confidence 99999999874
No 3
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=99.93 E-value=2.2e-26 Score=167.24 Aligned_cols=90 Identities=30% Similarity=0.436 Sum_probs=80.9
Q ss_pred Ccccc-cCCCCCCCCcchHHhhhcCceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcchhhhhHHHHHh
Q 041456 1 VIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSFLCHALVF 79 (92)
Q Consensus 1 ~~~~~-~~~~~~~~~~dl~~~l~~~RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~v~aglaIyD~m~ 79 (92)
++|.+ ++++.+++..|+|++||++|+|||+|+|++++++.++++|++|+.+++.++|.+|||||||++.+|++|||+|+
T Consensus 3 ~~p~~~~~~~~~~~~~d~~~~l~~~riI~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~~~~~I~~~i~ 82 (203)
T 3qwd_A 3 LIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQ 82 (203)
T ss_dssp CCCEEECC-----CEEEHHHHHHHTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHH
T ss_pred CCCeeeeecCCCCcccCHHHHHhcCCEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 36776 77888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccceeee
Q 041456 80 FQISSINASEY 90 (92)
Q Consensus 80 ~v~~~v~t~~~ 90 (92)
.+++||.|+|.
T Consensus 83 ~~~~~V~t~~~ 93 (203)
T 3qwd_A 83 HIKPDVQTICI 93 (203)
T ss_dssp HSSSCEEEEEE
T ss_pred HhcCCcEEEEe
Confidence 99999999873
No 4
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=99.93 E-value=4.3e-26 Score=172.96 Aligned_cols=88 Identities=28% Similarity=0.392 Sum_probs=76.5
Q ss_pred cccc-cCCCCCCCCcchHHhhhcCceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcchhhhhHHHHHhh
Q 041456 2 IPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSFLCHALVFF 80 (92)
Q Consensus 2 ~~~~-~~~~~~~~~~dl~~~l~~~RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~v~aglaIyD~m~~ 80 (92)
+|++ +.++.+++|.|+|++||++|+|||+|+|++++++.++++|++|+.+++.|+|.||||||||++.+|++|||+|++
T Consensus 59 ~p~~~~~~~~~~~~~di~s~ll~erII~l~G~I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPGGsV~ag~aIyd~I~~ 138 (277)
T 1tg6_A 59 IPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQY 138 (277)
T ss_dssp CCBCC---------CBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHH
T ss_pred CCeeeccCCCCcccccHHHHhhcCcEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHh
Confidence 5765 666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceee
Q 041456 81 QISSINASE 89 (92)
Q Consensus 81 v~~~v~t~~ 89 (92)
+++||.|+|
T Consensus 139 ~k~pV~t~v 147 (277)
T 1tg6_A 139 ILNPICTWC 147 (277)
T ss_dssp SCSCEEEEE
T ss_pred cCCCEEEEE
Confidence 999999987
No 5
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=99.91 E-value=2.5e-24 Score=153.85 Aligned_cols=88 Identities=27% Similarity=0.427 Sum_probs=82.8
Q ss_pred cccc-cCCCCCCCCcchHHhhhcCceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcchhhhhHHHHHhh
Q 041456 2 IPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSFLCHALVFF 80 (92)
Q Consensus 2 ~~~~-~~~~~~~~~~dl~~~l~~~RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~v~aglaIyD~m~~ 80 (92)
+|.+ +.++.++++.|++++|+++|+||++|+|++.+++.++++|++++.+++.++|.||||||||++.+|++|||+|+.
T Consensus 3 ~p~~~~~~~~~~~~~d~~~~l~~~rii~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~a~~~I~~~i~~ 82 (193)
T 1yg6_A 3 VPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQF 82 (193)
T ss_dssp SCBCCSSSCSSCCCCBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHH
T ss_pred CCeecccCCCCcchhhHHHHHhcCCEEEEcCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHHHh
Confidence 6766 556667889999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred cccccceee
Q 041456 81 QISSINASE 89 (92)
Q Consensus 81 v~~~v~t~~ 89 (92)
++.||.|++
T Consensus 83 ~~~pV~~~v 91 (193)
T 1yg6_A 83 IKPDVSTIC 91 (193)
T ss_dssp SSSCEEEEE
T ss_pred cCCCEEEEE
Confidence 999999986
No 6
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=99.91 E-value=1.6e-24 Score=158.05 Aligned_cols=88 Identities=25% Similarity=0.396 Sum_probs=77.8
Q ss_pred cccc-cCCCCCCCCcchHHhhhcCceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcchhhhhHHHHHhh
Q 041456 2 IPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSFLCHALVFF 80 (92)
Q Consensus 2 ~~~~-~~~~~~~~~~dl~~~l~~~RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~v~aglaIyD~m~~ 80 (92)
+|.+ ++++.+++|.|++++|+++|+||++|+|++++++.++++|++|+.+++.++|.||||||||++.+|++|||+|+.
T Consensus 22 ~p~~~~~~~~~~~~~d~~~~l~~~rii~l~g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~InSPGG~v~ag~~I~~~i~~ 101 (218)
T 1y7o_A 22 IPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNF 101 (218)
T ss_dssp CCEECC-------CEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHHHH
T ss_pred CceeeecCCCCcchhhHHHHhhcCCEEEEeCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHHHh
Confidence 6765 667778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceee
Q 041456 81 QISSINASE 89 (92)
Q Consensus 81 v~~~v~t~~ 89 (92)
+++||.|++
T Consensus 102 ~~~pV~t~v 110 (218)
T 1y7o_A 102 IKADVQTIV 110 (218)
T ss_dssp SSSCEEEEE
T ss_pred cCCCEEEEE
Confidence 999999986
No 7
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=99.88 E-value=8.8e-23 Score=148.99 Aligned_cols=82 Identities=20% Similarity=0.344 Sum_probs=77.4
Q ss_pred CCCCCCCCcchHHhhhcCceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcchhhhhHHHHHhhcccccc
Q 041456 7 GTAWEQPPPDLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSFLCHALVFFQISSIN 86 (92)
Q Consensus 7 ~~~~~~~~~dl~~~l~~~RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~v~aglaIyD~m~~v~~~v~ 86 (92)
.......|.|++++|+++|+||++|+|++++++.++++|++|+.+++ ++|.||||||||++.+|++|||+|+.+++||.
T Consensus 22 ~~~~~~~~~d~~~~l~~~riI~l~G~I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPGGsv~a~~~I~~~i~~~~~pV~ 100 (215)
T 2f6i_A 22 HMDIKDMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINH-NDIKIYINSPGGSINEGLAILDIFNYIKSDIQ 100 (215)
T ss_dssp CCCCSCSSHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECCBCHHHHHHHHHHHHHSSSCEE
T ss_pred CCccccccccHHHHHhCceEEEEccEECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCCCCHHHHHHHHHHHHhcCCCEE
Confidence 34455789999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred eee
Q 041456 87 ASE 89 (92)
Q Consensus 87 t~~ 89 (92)
|+|
T Consensus 101 t~v 103 (215)
T 2f6i_A 101 TIS 103 (215)
T ss_dssp EEE
T ss_pred EEE
Confidence 976
No 8
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=99.88 E-value=5.6e-23 Score=148.63 Aligned_cols=88 Identities=23% Similarity=0.277 Sum_probs=76.0
Q ss_pred cccc-cCCCCCCCCcchHHhhhcCceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcchhhhhHHHHHhh
Q 041456 2 IPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSFLCHALVFF 80 (92)
Q Consensus 2 ~~~~-~~~~~~~~~~dl~~~l~~~RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~v~aglaIyD~m~~ 80 (92)
+|.+ +.++.+++|.|++++|+++|+||++|+|++.+++.++++|.+++.+++.++|.|+||||||++.+|++|||+|+.
T Consensus 4 ~p~~~~~~~~~~~~~~~~~~l~~~rii~l~G~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v~a~~~I~~~i~~ 83 (208)
T 2cby_A 4 VTDMRSNSQGLSLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVL 83 (208)
T ss_dssp -----------CHHHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHH
T ss_pred CCeeeccCCCCcchhhHHHHhhcCcEEEEcCEECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCCCHHHHHHHHHHHHh
Confidence 4654 556677899999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred cccccceee
Q 041456 81 QISSINASE 89 (92)
Q Consensus 81 v~~~v~t~~ 89 (92)
.+.||.|++
T Consensus 84 ~~~pV~~~v 92 (208)
T 2cby_A 84 APCDIATYA 92 (208)
T ss_dssp CSSCEEEEE
T ss_pred cCCCEEEEE
Confidence 999998876
No 9
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=99.11 E-value=1.2e-10 Score=85.84 Aligned_cols=64 Identities=6% Similarity=-0.047 Sum_probs=58.2
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcchhhhhHHHHHhhcccccceee
Q 041456 25 RIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSFLCHALVFFQISSINASE 89 (92)
Q Consensus 25 RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~v~aglaIyD~m~~v~~~v~t~~ 89 (92)
.+|.+.|.|++++++.+.++|..++. ++.+.|.|+||||||++.++..|||+|+..+.||.+.+
T Consensus 11 ~vI~i~g~I~~~~~~~l~~~l~~a~~-~~~~~Ivl~inspGG~v~~~~~i~~~i~~~~~PVia~v 74 (230)
T 3viv_A 11 YVAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAMMNIVQRIQQSKIPVIIYV 74 (230)
T ss_dssp EEEEEESCBCHHHHHHHHHHHHHHHH-TTCSEEEEEEEBSCEEHHHHHHHHHHHHTCSSCEEEEE
T ss_pred EEEEEeCEECHHHHHHHHHHHHHHhc-CCCCEEEEEEeCCCcCHHHHHHHHHHHHhCCCCEEEEE
Confidence 46899999999999999999999875 45899999999999999999999999999888887765
No 10
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=98.62 E-value=1.2e-08 Score=82.87 Aligned_cols=74 Identities=12% Similarity=-0.099 Sum_probs=51.9
Q ss_pred cchHHhhhcCceEEeCccc---CHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCC-CcchhhhhHHHHHhhcccc-cceee
Q 041456 15 PDLASYLYKNRIVYLGMSF---VPSVRELILAEFLYLQYEDAEKPIYLYLNSTG-TTEVGSFLCHALVFFQISS-INASE 89 (92)
Q Consensus 15 ~dl~~~l~~~RiifL~g~I---d~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpG-G~v~aglaIyD~m~~v~~~-v~t~~ 89 (92)
.+.+++++++ |+++++ ++..+++++++|..+..+++-+.|.|+||||| |++.++..|||+|+..++. +.+++
T Consensus 49 ~~~~~~ll~~---~~~~~~~~~~~~~~~~i~~~L~~a~~d~~ik~I~L~inspGgG~v~~~~~I~~~i~~~k~~gkpvva 125 (593)
T 3bf0_A 49 SQRFSKLSRQ---LLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYA 125 (593)
T ss_dssp ---------------------CCEEEHHHHHHHHHHHHHCTTCCCEEEECTEEEECCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CChHHHHHhh---hccCCcccccccCHHHHHHHHHHHHhCCCceEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCeEEE
Confidence 3556666666 677765 36789999999999988777899999999999 9999999999999999875 77777
Q ss_pred ec
Q 041456 90 YI 91 (92)
Q Consensus 90 ~~ 91 (92)
|.
T Consensus 126 ~~ 127 (593)
T 3bf0_A 126 VG 127 (593)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 11
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=97.16 E-value=0.00038 Score=50.41 Aligned_cols=57 Identities=16% Similarity=0.039 Sum_probs=45.3
Q ss_pred eEEeCcccCHH------------HHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcchhhhhHHHHHhhcc
Q 041456 26 IVYLGMSFVPS------------VRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSFLCHALVFFQI 82 (92)
Q Consensus 26 iifL~g~Id~~------------~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~v~aglaIyD~m~~v~ 82 (92)
+|.+.|+|.+. ..+++...|-.+..++.-+-|.|.+|||||++.++..+++.++-.+
T Consensus 7 vi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l~~~~ 75 (240)
T 3rst_A 7 VLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIK 75 (240)
T ss_dssp EEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 34555666654 3578888888887766668899999999999999999999998764
No 12
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=96.79 E-value=0.00052 Score=55.70 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=47.9
Q ss_pred eEEeCcccCHH-------HHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcchhhhhHHHHHhhcc
Q 041456 26 IVYLGMSFVPS-------VRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSFLCHALVFFQI 82 (92)
Q Consensus 26 iifL~g~Id~~-------~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~v~aglaIyD~m~~v~ 82 (92)
+|.+.+++... .++.+.+.|-.+..++.-+-|.|.+|||||++.++..|++.++-++
T Consensus 305 vI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~spGG~~~~~~~i~~~i~~l~ 368 (593)
T 3bf0_A 305 VVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAAR 368 (593)
T ss_dssp EEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred EEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 67888887544 3799999999887766678999999999999999999999887654
No 13
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A
Probab=71.17 E-value=8.1 Score=31.31 Aligned_cols=56 Identities=9% Similarity=-0.116 Sum_probs=44.0
Q ss_pred cccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCC----------CcchhhhhHHHHHhhccccccee
Q 041456 31 MSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTG----------TTEVGSFLCHALVFFQISSINAS 88 (92)
Q Consensus 31 g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpG----------G~v~aglaIyD~m~~v~~~v~t~ 88 (92)
|.++.+.+..... ++.+- +..+-||-.++|+|| |-+.+|..+++++.-.+-|+-|+
T Consensus 361 G~l~~~~a~Kaar-~i~~a-~~~~iPlv~lvDt~Gf~~G~~~E~~Gi~~~ga~~l~a~~~~~VP~isv 426 (548)
T 2bzr_A 361 GCLDINASEKAAR-FVRTC-DCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITV 426 (548)
T ss_dssp GCBCHHHHHHHHH-HHHHH-HHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCCHHHHHHHHH-HHHHH-HhcCCCEEEEeeccCCCCChHHHHhhHHHHHHHHHHHHhCCCCCEEEE
Confidence 6788888888776 44443 345899999999999 88899999999988777665543
No 14
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}
Probab=60.29 E-value=16 Score=29.31 Aligned_cols=55 Identities=7% Similarity=-0.066 Sum_probs=40.5
Q ss_pred eCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCC----------CcchhhhhHHHHHhhccccc
Q 041456 29 LGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTG----------TTEVGSFLCHALVFFQISSI 85 (92)
Q Consensus 29 L~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpG----------G~v~aglaIyD~m~~v~~~v 85 (92)
.+|.++.+.+..+..-+-.-+ ..+-|+-.++|||| |....+..+++.+.-.+-|.
T Consensus 337 ~gG~l~~~~~~K~ar~i~~a~--~~~~Plv~l~ds~G~~~G~~~E~~G~~~~~Ak~l~~~~~~~vP~ 401 (522)
T 1x0u_A 337 FGGSIDIDAADKAARFIRFCD--AFNIPLISLVDTPGYVPGTDQEYKGIIRHGAKMLYAFAEATVPK 401 (522)
T ss_dssp GGGCBCHHHHHHHHHHHHHHH--HTTCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCE
T ss_pred cCCCcCHHHHHHHHHHHHHHh--hCCCCEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 347788988888876665333 34899999999999 77777777777776555444
No 15
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=59.83 E-value=9.8 Score=28.91 Aligned_cols=45 Identities=13% Similarity=0.020 Sum_probs=33.1
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcchhh
Q 041456 25 RIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGS 71 (92)
Q Consensus 25 RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~v~ag 71 (92)
|+-|.+|.++.+.+..+..-+- +..+. +-|+-.++||||..+-.+
T Consensus 147 ~~~~~~G~~~~~~~~Ka~r~~~-~A~~~-~lPlI~lvDt~Ga~~g~~ 191 (339)
T 2f9y_A 147 KIRRNFGMPAPEGYRKALRLMQ-MAERF-KMPIITFIDTPGAYPGVG 191 (339)
T ss_dssp HHHTGGGCCCHHHHHHHHHHHH-HHHHT-TCCEEEEEEESCSCCSHH
T ss_pred hhhhhcCCCCHHHHHHHHHHHH-HHhhc-CCCEEEEEeCCCCccchH
Confidence 4556778888898877776555 43333 789999999999987554
No 16
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=54.89 E-value=12 Score=28.19 Aligned_cols=44 Identities=14% Similarity=0.066 Sum_probs=31.6
Q ss_pred eEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcchhh
Q 041456 26 IVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGS 71 (92)
Q Consensus 26 iifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~v~ag 71 (92)
+-+.+|.++.+.+..+..-+- +..+. +-|+-.++||||..+-.+
T Consensus 134 ~~~~~G~~~~~~~~Ka~r~~~-~A~~~-~~PlI~lvdt~Ga~~g~~ 177 (327)
T 2f9i_A 134 IYRNFGMAHPEGYRKALRLMK-QAEKF-NRPIFTFIDTKGAYPGKA 177 (327)
T ss_dssp HHTGGGCCCHHHHHHHHHHHH-HHHHT-TCCEEEEEEESCSCCCHH
T ss_pred hhhhcCCCCHHHHHHHHHHHH-HHhhc-CCCEEEEEeCCCCCcchh
Confidence 334667788888777766555 43333 789999999999987554
No 17
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=42.38 E-value=26 Score=21.11 Aligned_cols=52 Identities=10% Similarity=0.013 Sum_probs=27.8
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCCCc-chhhhhHHHHH
Q 041456 25 RIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTT-EVGSFLCHALV 78 (92)
Q Consensus 25 RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~-v~aglaIyD~m 78 (92)
|++|.-. |++..+......-.+-...++.+|.+++|+||-. ...+..+.+.+
T Consensus 2 kvv~~v~--d~~~~~~al~~~~n~~~~~~~~~v~vv~~g~gv~~~~~~~~~~~~i 54 (108)
T 2pd2_A 2 KVVVQIK--DFDKVPQALRSVINLYNDIKDAEIEVVLHQSAIKALLKDSDTRSII 54 (108)
T ss_dssp EEEEEEC--CGGGHHHHHHHHHHHHHHSTTCEEEEEECGGGGGGGBTTCTTHHHH
T ss_pred eEEEEeC--ChHHHHHHHHHHHHHHhhCCCCeEEEEEcChHHHHHHcCchHHHHH
Confidence 3444333 4454443333333322235578999999999975 33333344444
No 18
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=39.13 E-value=38 Score=25.10 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=33.8
Q ss_pred EeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcchhhh
Q 041456 28 YLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSF 72 (92)
Q Consensus 28 fL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~v~agl 72 (92)
|++|.++...+..+...+-.... + +-|+-++.+|+|+.+..+.
T Consensus 129 ~~ggslg~~~~~Ki~r~~e~A~~-~-~~PvI~l~~sGGarlqeg~ 171 (304)
T 2f9y_B 129 FMGGSMGSVVGARFVRAVEQALE-D-NCPLICFSASGGARMQEAL 171 (304)
T ss_dssp STTTCBCTHHHHHHHHHHHHHHH-H-TCCEEEEEEESSBCGGGTH
T ss_pred cccCCCCHHHHHHHHHHHHHHHh-C-CCCEEEEECCCCcCHHHHH
Confidence 36788889998888877665544 3 7899999999999986653
No 19
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=36.21 E-value=60 Score=21.07 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=22.7
Q ss_pred hcCceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeC
Q 041456 22 YKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNS 63 (92)
Q Consensus 22 ~~~RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINS 63 (92)
++++.-.+...++=.---.++..-+.| ++++.++||+|.
T Consensus 47 Ldk~KflVp~~~tv~qf~~~iRkrl~l---~~~~alFl~Vn~ 85 (119)
T 3h9d_A 47 LDRCKFLVPSDLTVGQFVSVLRKRVQL---EAESALFVYTND 85 (119)
T ss_dssp CSSCEEEEETTCBHHHHHHHHHHHHTC---CTTSCCEEEETT
T ss_pred cCcceEEcCCCCCHHHHHHHHHHHhCC---CccceEEEEECC
Confidence 455555555555533333444444444 567889999985
No 20
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=35.98 E-value=76 Score=23.30 Aligned_cols=43 Identities=19% Similarity=0.102 Sum_probs=31.7
Q ss_pred eCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcchhhhh
Q 041456 29 LGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSFL 73 (92)
Q Consensus 29 L~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~v~agla 73 (92)
++|.+..+.+..++..+- +..+. +-|+-.+.+|||.....|..
T Consensus 133 ~gGs~g~~~~~K~~r~ie-~A~~~-~lPlI~l~dsgGar~qEGi~ 175 (285)
T 2f9i_B 133 RMGSMGSVIGEKICRIID-YCTEN-RLPFILFSASGGARMQEGII 175 (285)
T ss_dssp GGGCCCHHHHHHHHHHHH-HHHHT-TCCEEEEEEECSCCGGGHHH
T ss_pred ccCcCCHHHHHHHHHHHH-HHHHc-CCCEEEEEeCCCcchhhhhh
Confidence 467888888888776544 43333 78999999999998766544
No 21
>1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein STRU initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.114.1.1
Probab=35.14 E-value=36 Score=20.78 Aligned_cols=46 Identities=17% Similarity=0.039 Sum_probs=27.6
Q ss_pred cCceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcc
Q 041456 23 KNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTE 68 (92)
Q Consensus 23 ~~RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~v 68 (92)
+.|++|.-..-+++..+......--+-...++-+|.+++|+||-..
T Consensus 3 ~~kvv~~v~~~d~~~~~~~L~~a~n~~~~~~~~~i~vv~~G~av~~ 48 (113)
T 1l1s_A 3 DYRVVFHIDEDDESRVLLLISNVRNLMADLESVRIEVVAYSMGVNV 48 (113)
T ss_dssp CEEEEEEECCCCHHHHHHHHHHHHHHHHHCSSEEEEEEECGGGGGG
T ss_pred ceEEEEEecCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEechHHHH
Confidence 3466775555455554444444333333345678999999999754
No 22
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=33.48 E-value=15 Score=23.44 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=8.6
Q ss_pred cCceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcchhhhhHHHHH
Q 041456 23 KNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGSFLCHALV 78 (92)
Q Consensus 23 ~~RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~v~aglaIyD~m 78 (92)
++|++|=+..++|+. .|-.+.-. +..-|++.+.-+||.+...++..-.-
T Consensus 40 ~QrLi~~Gk~L~D~~------tL~~~~I~-~gsti~l~~rl~GG~~~~sl~~la~k 88 (128)
T 3u5e_m 40 QQRLIFAGKQLEDGR------TLSDYNIQ-KESTLHLVLRLRGGIIEPSLKALASK 88 (128)
T ss_dssp --------------------------------------------CCCHHHHHHHHH
T ss_pred HEEEEECCEECCCCC------chhhhccC-CCCEEEEEEEcCCCCCChhHHHHHHH
Confidence 356777666666532 22222323 35669999999999999888766443
No 23
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=32.06 E-value=1.4e+02 Score=21.48 Aligned_cols=59 Identities=7% Similarity=-0.012 Sum_probs=41.9
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeC---CCCcchhhhhHHHHHhhccccccee
Q 041456 25 RIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNS---TGTTEVGSFLCHALVFFQISSINAS 88 (92)
Q Consensus 25 RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINS---pGG~v~aglaIyD~m~~v~~~v~t~ 88 (92)
|++|++.-+-..-...+...|-.+..+. + .+..|. -||.-.. ..+++.|.....|+.|.
T Consensus 2 ~ilfiGDi~g~~G~~~v~~~l~~lr~~~---d-~vi~ngen~~~G~g~~-~~~~~~l~~~G~D~~T~ 63 (252)
T 2z06_A 2 RVLFIGDVMAEPGLRAVGLHLPDIRDRY---D-LVIANGENAARGKGLD-RRSYRLLREAGVDLVSL 63 (252)
T ss_dssp EEEEECCBCHHHHHHHHHHHHHHHGGGC---S-EEEEECTTTTTTSSCC-HHHHHHHHHHTCCEEEC
T ss_pred EEEEEEecCCcccHHHHHHHHHHHHhhC---C-EEEEeCCCccCCCCcC-HHHHHHHHhCCCCEEEe
Confidence 7899998777666666666666665554 4 566654 3666443 68889999999888775
No 24
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Probab=31.88 E-value=1.3e+02 Score=24.48 Aligned_cols=64 Identities=9% Similarity=-0.161 Sum_probs=46.6
Q ss_pred cCceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCC----------CcchhhhhHHHHHhhccccccee
Q 041456 23 KNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTG----------TTEVGSFLCHALVFFQISSINAS 88 (92)
Q Consensus 23 ~~RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpG----------G~v~aglaIyD~m~~v~~~v~t~ 88 (92)
++|..-.+|.++.+.+.....-+-.-+. -+-|+-.++|.|| |-+.+|..+..++.-.+-|+-|+
T Consensus 379 ~~~~~~~~G~l~~~~a~Kaarfi~lcd~--f~iPlv~lvDtpGf~~G~~aE~~Gi~~~gAk~l~a~a~a~VP~itv 452 (588)
T 3gf3_A 379 KQNSVGIGGKLYRQGLIKMNEFVTLCAR--DRIPLIWLQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEI 452 (588)
T ss_dssp SSSCEEETTEECHHHHHHHHHHHHHHHH--TTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHHHCSCEEEE
T ss_pred hhhhhccCCCcCHHHHHHHHHHHHHhhh--cCCCeEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4567778899999998887644443333 3899999999997 55667777887777666665543
No 25
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B
Probab=31.80 E-value=83 Score=25.53 Aligned_cols=55 Identities=15% Similarity=0.031 Sum_probs=38.2
Q ss_pred cccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCC----------CcchhhhhHHHHHhhcccccce
Q 041456 31 MSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTG----------TTEVGSFLCHALVFFQISSINA 87 (92)
Q Consensus 31 g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpG----------G~v~aglaIyD~m~~v~~~v~t 87 (92)
|.++.+.+... ++++.+-.. .+-|+-+++|+|| |-..++..+..++.-.+-|+-|
T Consensus 366 G~l~~~~a~Ka-arfi~~c~~-~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~~~a~~~a~vP~it 430 (555)
T 3u9r_B 366 GILFAEAAQKG-AHFIELACQ-RGIPLLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACARVPKFT 430 (555)
T ss_dssp SSBCHHHHHHH-HHHHHHHHH-HTCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEE
T ss_pred CccCHHHHHHH-HHHHHHHhc-CCCCEEEEecCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 77889888774 455555433 3799999999999 4456667777776665555544
No 26
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4
Probab=28.96 E-value=1.3e+02 Score=24.42 Aligned_cols=61 Identities=11% Similarity=-0.144 Sum_probs=44.5
Q ss_pred ceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCC----------CcchhhhhHHHHHhhcccccce
Q 041456 25 RIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTG----------TTEVGSFLCHALVFFQISSINA 87 (92)
Q Consensus 25 RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpG----------G~v~aglaIyD~m~~v~~~v~t 87 (92)
+....+|.++.+.+.....-+- +- +..+-||-.++|.|| |-..+|..+.+++.-.+-|+-|
T Consensus 379 ~~~~~~G~l~~~~a~Kaarfi~-~c-~~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gA~~~~a~a~a~vP~it 449 (587)
T 1pix_A 379 GSVGIGGKLYRQGLVKMNEFVT-LC-ARDRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFE 449 (587)
T ss_dssp TCCEETTEECHHHHHHHHHHHH-HH-HHTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEE
T ss_pred cccccCCCcCHHHHHHHHHHHH-Hh-hcCCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 5666789999999887766554 33 345899999999998 4466777777777766655544
No 27
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*
Probab=28.50 E-value=1.3e+02 Score=25.51 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=47.5
Q ss_pred hcCceE-EeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCC----------CcchhhhhHHHHHhhcccccce
Q 041456 22 YKNRIV-YLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTG----------TTEVGSFLCHALVFFQISSINA 87 (92)
Q Consensus 22 ~~~Rii-fL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpG----------G~v~aglaIyD~m~~v~~~v~t 87 (92)
.+++.. +.+|.++.+.+.....-+..-+ ..+-|+-.++|.|| |-..+|..+.+++.-.+-|+-|
T Consensus 452 ~~e~~~~~~gG~l~~~~a~KaarfI~~cd--~f~iPlv~LvDtpGf~~G~~aE~~Gi~~~gAkll~A~a~a~VP~it 526 (793)
T 2x24_A 452 SEAKIIQQAGQVWFPDSAYKTAQAIKDFN--REKLPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRKYRQPVLI 526 (793)
T ss_dssp CCCEEEEECTTEECHHHHHHHHHHHHHHH--TTTCCEEEECCBCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEE
T ss_pred hhhhhhhhcCCcccHHHHHHHHHHHHHhc--cCCCCEEEEecCCCCCCCHHHHHhhHHHHHHHHHHHHHhcCCCEEE
Confidence 345555 4479999999888776665543 45899999999998 5667788888888777666544
No 28
>3m5k_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structural genomics, joint center for structural genomics; HET: MSE FMN; 1.86A {Parabacteroides distasonis}
Probab=28.41 E-value=65 Score=20.77 Aligned_cols=48 Identities=6% Similarity=0.067 Sum_probs=34.0
Q ss_pred CcchHHhhhcCceE--EeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 041456 14 PPDLASYLYKNRIV--YLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYL 61 (92)
Q Consensus 14 ~~dl~~~l~~~Rii--fL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyI 61 (92)
.+++.+.+.++|-+ |-..+|+++.-++++..-.+--+....+|..+++
T Consensus 5 ~m~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~APS~~n~qpw~~~v 54 (172)
T 3m5k_A 5 ENQTLETILNRKSVRKYKDRPVEKEKIDKLIRAGMAAPSSRDRRPWEFII 54 (172)
T ss_dssp CCHHHHHHHHCCCCCCBCSSCCCHHHHHHHHHHHHTSCCGGGCCCEEEEE
T ss_pred chHHHHHHHhCccccCcCCCCCCHHHHHHHHHHHHhCcCcCCCCCeEEEE
Confidence 36778888777654 7778888888777777666544444477888776
No 29
>3g14_A Nitroreductase family protein; structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: MSE; 1.75A {Clostridium novyi}
Probab=26.00 E-value=87 Score=20.60 Aligned_cols=49 Identities=6% Similarity=0.010 Sum_probs=33.9
Q ss_pred cchHHhhhcCceE--EeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeC
Q 041456 15 PDLASYLYKNRIV--YLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNS 63 (92)
Q Consensus 15 ~dl~~~l~~~Rii--fL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINS 63 (92)
+++.+.+.++|.+ |-..+|+++.-.+++....+--+....+|.++++=.
T Consensus 2 M~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~aPS~~n~qpw~~~vv~ 52 (193)
T 3g14_A 2 MEFYEVIKKRKSIKKFEQTAIDRDKLLKIIDMAMRAPSWKNKTPYKFIVVE 52 (193)
T ss_dssp CBHHHHHHHCCBCCCBCCCCCCHHHHHHHHHHHHTCCCGGGCCCEEEEEEC
T ss_pred CcHHHHHHhCcchhcCCCCCCCHHHHHHHHHHHHHCcCccCCCCeEEEEEe
Confidence 4667777777644 777788888877777766654444457888888644
No 30
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=25.96 E-value=1e+02 Score=18.94 Aligned_cols=53 Identities=13% Similarity=0.067 Sum_probs=28.0
Q ss_pred hcCceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeC---CCCcchhhhhHHHHH
Q 041456 22 YKNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNS---TGTTEVGSFLCHALV 78 (92)
Q Consensus 22 ~~~RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINS---pGG~v~aglaIyD~m 78 (92)
++++.--+.+..+=..--.++..-|.| ++++.+++|||+ |..+..- -.+|+.-
T Consensus 19 l~k~KflVp~~~tv~~~~~~lRkrL~l---~~~~alFlyVnn~~~P~~d~~~-~~Ly~~~ 74 (91)
T 4gdk_A 19 MKTKKWAVERTRTIQGLIDFIKKFLKL---VASEQLFIYVNQSFAPSPDQEV-GTLYECF 74 (91)
T ss_dssp CSCCEEEEETTCBHHHHHHHHHHHTTC---CSSSCCEEEETTTBCCCTTCBH-HHHHHHH
T ss_pred ccccEEEcCCCCCHHHHHHHHHHHhCC---CCCCeEEEEECCccCCChhhHH-HHHHHHh
Confidence 345555555555433333444444433 567889999985 5433322 2345543
No 31
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=24.05 E-value=71 Score=20.66 Aligned_cols=38 Identities=8% Similarity=0.003 Sum_probs=26.6
Q ss_pred eEEeCc-ccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCCC
Q 041456 26 IVYLGM-SFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGT 66 (92)
Q Consensus 26 iifL~g-~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG 66 (92)
+.+.++ +|+.+.|..++++++.+... ++.-+.++=.+-
T Consensus 24 ~~~~~~~~i~~e~A~~~~~~~~~l~~~---~~~~vL~D~r~~ 62 (124)
T 3bl4_A 24 LTWPRGAAITAADAERAMLRVNQLCGD---DRHPMLVDMATT 62 (124)
T ss_dssp EECSSSSCCCHHHHHHHHHHHHHHHTT---CCEEEEEECCSS
T ss_pred EEEcCCCccCHHHHHHHHHHHHHHhCC---CceEEEEEcccc
Confidence 333444 69999999999999987653 456666654433
No 32
>3k6h_A Nitroreductase family protein; APC5990, agrobacterium tumefaciens ST structural genomics, PSI-2, protein structure initiative; HET: FMN; 3.05A {Agrobacterium tumefaciens str}
Probab=23.94 E-value=89 Score=20.56 Aligned_cols=48 Identities=19% Similarity=0.052 Sum_probs=34.5
Q ss_pred CcchHHhhhcCceE---EeCcccC-HHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 041456 14 PPDLASYLYKNRIV---YLGMSFV-PSVRELILAEFLYLQYEDAEKPIYLYL 61 (92)
Q Consensus 14 ~~dl~~~l~~~Rii---fL~g~Id-~~~a~~ii~~Ll~L~~~d~~~~I~lyI 61 (92)
..++.+.+.++|-+ |...++. ++.-++++..-.+--+....+|.++++
T Consensus 8 m~~~~~~i~~RrSvR~~f~~~~v~~~e~l~~il~aa~~APS~~n~Qpw~f~v 59 (197)
T 3k6h_A 8 DIKLLDYLRVRRSTPALQLSEPGPSKGEIEEILRLAVRVPDHGKLAPWRFVV 59 (197)
T ss_dssp CCBHHHHHTTCCCCCSTTCBSCCCCHHHHHHHHHHHTCSCCTTSCCCEEEEE
T ss_pred cHHHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHhCcCcCCCcCeEEEE
Confidence 35888888888877 5678886 777777776655444445578888876
No 33
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=23.81 E-value=65 Score=19.38 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=20.2
Q ss_pred CcccCHHHHHHHHHHHHHhhhcCCCCCeE
Q 041456 30 GMSFVPSVRELILAEFLYLQYEDAEKPIY 58 (92)
Q Consensus 30 ~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~ 58 (92)
++.++.+.....+.+|+ +.||+.+|..
T Consensus 13 g~~~S~~~Ik~~Ik~lI--~~Ed~~kPlS 39 (76)
T 2ahq_A 13 AEGLTQGELMKLIKEIV--ENEDKRKPYS 39 (76)
T ss_dssp CCSCCHHHHHHHHHHHG--GGCCSSSCCC
T ss_pred CccccHHHHHHHHHHHH--HhcCCCCCCC
Confidence 45677777888888887 7788888753
No 34
>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc 14579} SCOP: d.90.1.1
Probab=23.60 E-value=1.3e+02 Score=19.24 Aligned_cols=48 Identities=10% Similarity=0.006 Sum_probs=33.3
Q ss_pred CcchHHhhhcCceE--EeCc-ccCHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 041456 14 PPDLASYLYKNRIV--YLGM-SFVPSVRELILAEFLYLQYEDAEKPIYLYL 61 (92)
Q Consensus 14 ~~dl~~~l~~~Rii--fL~g-~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyI 61 (92)
.+++.+.+.++|-+ |-.. +|+++.-+.++..-.+--+....+|.++++
T Consensus 5 ~m~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~aa~~APS~~n~Qpw~f~v 55 (200)
T 1ywq_A 5 TTNLKEAIVNRRSIRKVTKNDAITKERIEEVLKTALHAPTSFNMQSGRMVV 55 (200)
T ss_dssp TSCHHHHHHHCCCCCCEECCTTSCHHHHHHHHHHHTTSCCGGGCCCEEEEE
T ss_pred HHHHHHHHHhhhhHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCCCeEEEE
Confidence 35777777777644 7777 899888777766655443444478888876
No 35
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*
Probab=22.52 E-value=1.3e+02 Score=19.96 Aligned_cols=49 Identities=12% Similarity=0.025 Sum_probs=34.1
Q ss_pred CCcchHHhhhcCceE--EeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 041456 13 PPPDLASYLYKNRIV--YLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYL 61 (92)
Q Consensus 13 ~~~dl~~~l~~~Rii--fL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyI 61 (92)
...++.+.+.++|-+ |-..+|+++.-++++..-.+--+....+|..+++
T Consensus 18 ~~~~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~APS~~n~Qpw~f~v 68 (191)
T 3h4o_A 18 QGMNFVELAKKRYSCRNYQDRKVEKEKLEKVLDVARIAPTGGNRQPQRLIV 68 (191)
T ss_dssp --CCHHHHHHHCCBCCCBCSCCCCHHHHHHHHHHHHHSCCGGGCCCEEEEE
T ss_pred CHHHHHHHHHhCccccccCCCCCCHHHHHHHHHHHHhCcCcCCCcCeEEEE
Confidence 346788888877644 7778899888888877776554444467777765
No 36
>4dn2_A Nitroreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgrc; HET: FMN; 1.50A {Geobacter metallireducens} PDB: 4g8s_A*
Probab=22.25 E-value=1.5e+02 Score=19.65 Aligned_cols=56 Identities=7% Similarity=-0.069 Sum_probs=38.3
Q ss_pred CCCCCCCcchHHhhhcCceE--EeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeC
Q 041456 8 TAWEQPPPDLASYLYKNRIV--YLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNS 63 (92)
Q Consensus 8 ~~~~~~~~dl~~~l~~~Rii--fL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINS 63 (92)
.+.....+++.+.+.++|-+ |-..+|+++.-.+++..-.+--+....+|..+++=.
T Consensus 16 ~~~~~~~m~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~APS~~n~Qpw~f~vv~ 73 (208)
T 4dn2_A 16 ENLYFQSMETLEAIRTRRSVRKFSDRPVEPEKLRAVLDAARLAPSWANMQCWRFVVVE 73 (208)
T ss_dssp -CCSTTCCBHHHHHHHCCBCCCBCCCCCCHHHHHHHHHHHHTSCCGGGCCCEEEEEEC
T ss_pred hhhccCcchHHHHHHhCccccCCCCCCCCHHHHHHHHHHHHHCcCcCCCCCEEEEEEE
Confidence 34445667899999888743 667788888777777666554444457899888643
No 37
>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9
Probab=21.76 E-value=1.1e+02 Score=22.50 Aligned_cols=62 Identities=10% Similarity=0.084 Sum_probs=38.4
Q ss_pred cCceEEeCcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcchhh----hhHHHHHhhccccccee
Q 041456 23 KNRIVYLGMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTEVGS----FLCHALVFFQISSINAS 88 (92)
Q Consensus 23 ~~RiifL~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~v~ag----laIyD~m~~v~~~v~t~ 88 (92)
+=|++|++.-+-..-...+...+-.+..+. ++=.++.| ||+...| ..+++.|+....|+.|+
T Consensus 4 ~m~ilf~GDv~G~~G~~~l~~~l~~lr~~~--~~d~vi~N--gen~~gG~g~~~~~~~~ln~~G~Da~Tl 69 (281)
T 1t71_A 4 SIKFIFLGDVYGKAGRNIIKNNLAQLKSKY--QADLVIVN--AENTTHGKGLSLKHYEFLKEAGVNYITM 69 (281)
T ss_dssp CCEEEEECEEBHHHHHHHHHTTHHHHHHHH--TCSEEEEE--CTBTTTTSSCCHHHHHHHHHHTCCEEEC
T ss_pred eEEEEEECCcCChHHHHHHHHHHHHHHHhc--CCCEEEEc--CCCCCCCCCcCHHHHHHHHhcCCCEEEE
Confidence 348899887765544444444444444432 12367777 5554433 47888899988888876
No 38
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=21.76 E-value=43 Score=24.51 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=19.2
Q ss_pred hhhcCCCCCeEEEE-eCCCCcchh-hhhHHHHH
Q 041456 48 LQYEDAEKPIYLYL-NSTGTTEVG-SFLCHALV 78 (92)
Q Consensus 48 L~~~d~~~~I~lyI-NSpGG~v~a-glaIyD~m 78 (92)
-.+|.|+|||++.+ -+|||..+. +-.+-+.+
T Consensus 10 ~~~~~P~kpi~liVp~~~GG~~D~~aR~la~~l 42 (312)
T 2f5x_A 10 HGSEYPERPVNMVVPFAAGGPTDNVARSLAESM 42 (312)
T ss_dssp ----CCSSCEEEEESSCTTSHHHHHHHHHHHHH
T ss_pred cCCcCCCCCEEEEEeeCCccHHHHHHHHHHHHH
Confidence 34678999999999 577887663 33444444
No 39
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4
Probab=21.37 E-value=2.1e+02 Score=22.83 Aligned_cols=53 Identities=6% Similarity=-0.111 Sum_probs=35.8
Q ss_pred cccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcc----------hhhhhHHHHHhhccccc
Q 041456 31 MSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTGTTE----------VGSFLCHALVFFQISSI 85 (92)
Q Consensus 31 g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpGG~v----------~aglaIyD~m~~v~~~v 85 (92)
|.++.+.+.....-+- +- +..+-||-.++|+||-.+ .++..+++.+.-.+-|+
T Consensus 344 G~~~~~~~~Kaar~i~-~a-~~~~~Plv~lvDtpG~~~G~~~E~~g~~~~~A~~~~a~~~~~vP~ 406 (527)
T 1vrg_A 344 GVLDIDSSDKAARFIR-FL-DAFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPK 406 (527)
T ss_dssp GCBCHHHHHHHHHHHH-HH-HHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCE
T ss_pred CCCCHHHHHHHHHHHH-HH-hhcCCCeEEEecCCCCcCchhhHHhHHHHHHHHHHHHHhcCCCCE
Confidence 6788888887776664 33 345899999999998654 45555666555544443
No 40
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=21.30 E-value=64 Score=22.01 Aligned_cols=45 Identities=11% Similarity=-0.000 Sum_probs=11.2
Q ss_pred ccCHHHHHHHHHHHHH------hhhcCCCCCeEEEEeCCCCcchhhhhHHH
Q 041456 32 SFVPSVRELILAEFLY------LQYEDAEKPIYLYLNSTGTTEVGSFLCHA 76 (92)
Q Consensus 32 ~Id~~~a~~ii~~Ll~------L~~~d~~~~I~lyINSpGG~v~aglaIyD 76 (92)
-++.+.+.+++++.+. +++...-..+.=-+.||||.-.+|+.-++
T Consensus 194 Gl~~~~a~~~~~~~~~gs~~~~~~~~~~p~~l~~~v~spgG~t~~gl~~le 244 (247)
T 3gt0_A 194 GMPRNQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGTTIEAVATLE 244 (247)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHSCC------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcCCCCchHHHHHHHHH
Confidence 3666777777766543 22222233344457899999988887554
No 41
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Probab=20.82 E-value=2.2e+02 Score=22.70 Aligned_cols=56 Identities=4% Similarity=-0.144 Sum_probs=39.5
Q ss_pred CcccCHHHHHHHHHHHHHhhhcCCCCCeEEEEeCCC----------CcchhhhhHHHHHhhcccccce
Q 041456 30 GMSFVPSVRELILAEFLYLQYEDAEKPIYLYLNSTG----------TTEVGSFLCHALVFFQISSINA 87 (92)
Q Consensus 30 ~g~Id~~~a~~ii~~Ll~L~~~d~~~~I~lyINSpG----------G~v~aglaIyD~m~~v~~~v~t 87 (92)
+|.++.+.+.....-+-.- +..+-||-.++|.|| |-..++..+.+++.-.+-|+-|
T Consensus 339 ~G~~~~~~a~Kaar~i~~~--~~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~~A~~l~a~a~~~vP~it 404 (523)
T 1on3_A 339 SGCLDINASDKAAEFVNFC--DSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKIT 404 (523)
T ss_dssp GGCBCHHHHHHHHHHHHHH--HHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHH--HhcCCCeEEEEeCCCcCcchHHHHhhHHHHHHHHHHHHhcCCCCEEE
Confidence 3678888887776655433 345899999999887 5566777777777666555544
Done!