BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041458
(568 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 145 KKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGN----------LNQSLQFLDRL 194
KKG+V A++L ++ G + YN L+ +C L L++ ++
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLY-VCSLAEAATESSPNPGLSRGFDIFKQM 96
Query: 195 IQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRT 254
I +VPN T++ A + A ++ + A G +P L SY L G C++G
Sbjct: 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA 156
Query: 255 EEA 257
++A
Sbjct: 157 DKA 159
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/76 (15%), Positives = 36/76 (47%)
Query: 114 MKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNS 173
+ + + + M+ ++P+ +++T K + A +V++M+ +G +Y
Sbjct: 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145
Query: 174 LVRGLCMLGNLNQSLQ 189
+ G C G+ +++ +
Sbjct: 146 ALFGFCRKGDADKAYE 161
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 45/95 (47%)
Query: 431 AFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLL 490
AF ++ +M +G P +Y + G C +G ++A E+ M E + P+ ALL
Sbjct: 124 AFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183
Query: 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVE 525
++ D + Q + + + +++T+ ++ E
Sbjct: 184 VSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEE 218
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 34/79 (43%)
Query: 430 QAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALL 489
+ F + +M P+ T+++ R + E A ++ M+ + +P + ++ L
Sbjct: 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPAL 147
Query: 490 LGLCKSRRTDLSLEVFQMM 508
G C+ D + EV M
Sbjct: 148 FGFCRKGDADKAYEVDAHM 166
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 145 KKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGN----------LNQSLQFLDRL 194
KKG+V A++L ++ G + YN L+ +C L L++ +
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLY-VCSLAEAATESSPNPGLSRGFDIFKQX 96
Query: 195 IQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRT 254
I +VPN T++ A + A + A G +P L SY L G C++G
Sbjct: 97 IVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDA 156
Query: 255 EEA 257
++A
Sbjct: 157 DKA 159
>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
pdb|2WNT|B Chain B, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
Length = 330
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 109/260 (41%), Gaps = 45/260 (17%)
Query: 135 SYTYLVNCLCKKGNVGYAMQLVEKME-----------DYGYPTNTVTYNSLV---RGLCM 180
SY+ C+ K N+ YA+++++K + YG N +T + + + +
Sbjct: 39 SYSECKRCVHKATNMEYAVKVIDKSKRDPSEEIEILLRYGQHPNIITLKDVYDDGKHVYL 98
Query: 181 LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDD--IIAKGGKPNL 238
+ L + + LD+++++ EA++ + ++ L ++ + KP+
Sbjct: 99 VTELMRGGELLDKILRQKFFSER-------EASFVLHTIGKTVEYLHSQGVVHRDLKPSN 151
Query: 239 VSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAE 298
+ Y E E +R + GF + + N LL + C + A E+L
Sbjct: 152 ILY-------VDESGNPECLR----ICDFGFAKQLRAENGLLMTPCYTANF-VAPEVLKR 199
Query: 299 M---DGGD-RSPTIVTYNILIGSLAY-HGKTDHALKVLDEMVKGRFRPSAASYNPIIARL 353
+G D S I+ Y +L G + +G +D ++L + G+F S ++N +
Sbjct: 200 QGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEILTRIGSGKFTLSGGNWNTV---- 255
Query: 354 CSEGKVDLVVKCLDQMFHRR 373
SE DLV K L H+R
Sbjct: 256 -SETAKDLVSKMLHVDPHQR 274
>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
pdb|3RNY|B Chain B, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
Length = 346
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 108/260 (41%), Gaps = 45/260 (17%)
Query: 135 SYTYLVNCLCKKGNVGYAMQLVEKME-----------DYGYPTNTVTYNSLV---RGLCM 180
SY+ C+ K N+ YA+++++K + YG N +T + + + +
Sbjct: 39 SYSECKRCVHKATNMEYAVKVIDKSKRDPSEEIEILLRYGQHPNIITLKDVYDDGKHVYL 98
Query: 181 LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDD--IIAKGGKPNL 238
+ L + + LD+++++ EA++ + ++ L ++ + KP+
Sbjct: 99 VTELMRGGELLDKILRQKFFSER-------EASFVLHTIGKTVEYLHSQGVVHRDLKPSN 151
Query: 239 VSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAE 298
+ Y E E +R GF + + N LL + C + A E+L
Sbjct: 152 ILY-------VDESGNPECLRIC----DFGFAKQLRAENGLLMTPCYTANF-VAPEVLKR 199
Query: 299 M---DGGD-RSPTIVTYNILIGSLAY-HGKTDHALKVLDEMVKGRFRPSAASYNPIIARL 353
+G D S I+ Y +L G + +G +D ++L + G+F S ++N +
Sbjct: 200 QGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEILTRIGSGKFTLSGGNWNTV---- 255
Query: 354 CSEGKVDLVVKCLDQMFHRR 373
SE DLV K L H+R
Sbjct: 256 -SETAKDLVSKMLHVDPHQR 274
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 105/259 (40%), Gaps = 43/259 (16%)
Query: 135 SYTYLVNCLCKKGNVGYAMQLVEKME-----------DYGYPTNTVTYNSLV---RGLCM 180
SY+ C+ K N+ +A+++++K + YG N +T + + + +
Sbjct: 34 SYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYV 93
Query: 181 LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVS 240
+ L + + LD+++++ + L +HA ++ + KP+ +
Sbjct: 94 VTELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHA-----QGVVHRDLKPSNIL 148
Query: 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMD 300
Y E E+IR + GF + + N LL + C + A E+L E
Sbjct: 149 Y-------VDESGNPESIR----ICDFGFAKQLRAENGLLMTPCYTANF-VAPEVL-ERQ 195
Query: 301 GGDRSPTIVT-----YNILIGSLAY-HGKTDHALKVLDEMVKGRFRPSAASYNPIIARLC 354
G D + I + Y +L G + +G D ++L + G+F S +N +
Sbjct: 196 GYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSV----- 250
Query: 355 SEGKVDLVVKCLDQMFHRR 373
S+ DLV K L H+R
Sbjct: 251 SDTAKDLVSKMLHVDPHQR 269
>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2: Se-Met Derivative
Length = 342
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 103/259 (39%), Gaps = 43/259 (16%)
Query: 135 SYTYLVNCLCKKGNVGYAMQLVEKME-----------DYGYPTNTVTYNSLV---RGLCM 180
SY+ C+ K N +A+++++K + YG N +T + + + +
Sbjct: 34 SYSVCKRCIHKATNXEFAVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYV 93
Query: 181 LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVS 240
+ L + + LD+++++ + L +HA ++ + KP+ +
Sbjct: 94 VTELXKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHA-----QGVVHRDLKPSNIL 148
Query: 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMD 300
Y E E+IR + GF + + N LL + C + A E+L E
Sbjct: 149 Y-------VDESGNPESIR----ICDFGFAKQLRAENGLLXTPCYTANF-VAPEVL-ERQ 195
Query: 301 GGDRSPTIVT-----YNILIGSLAY-HGKTDHALKVLDEMVKGRFRPSAASYNPIIARLC 354
G D + I + Y L G + +G D ++L + G+F S +N +
Sbjct: 196 GYDAACDIWSLGVLLYTXLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSV----- 250
Query: 355 SEGKVDLVVKCLDQMFHRR 373
S+ DLV K L H+R
Sbjct: 251 SDTAKDLVSKXLHVDPHQR 269
>pdb|2ILR|A Chain A, Crystal Structure Of Human Fanconi Anemia Protein E C-
Terminal Domain
Length = 264
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 394 QEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKG---KTYQAFQ--LLYEMTKY 441
+E F ++QSL +Q E + ++ LC+KG T A+ +L MTKY
Sbjct: 176 EETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLAATTSMAYAKLMLTVMTKY 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,747,379
Number of Sequences: 62578
Number of extensions: 714918
Number of successful extensions: 1579
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1559
Number of HSP's gapped (non-prelim): 25
length of query: 568
length of database: 14,973,337
effective HSP length: 104
effective length of query: 464
effective length of database: 8,465,225
effective search space: 3927864400
effective search space used: 3927864400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)