Query 041458
Match_columns 568
No_of_seqs 797 out of 3017
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 07:18:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 9.3E-70 2E-74 564.3 61.7 488 71-562 378-893 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.9E-69 6.3E-74 560.6 57.5 477 71-553 414-916 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 9.9E-67 2.1E-71 553.1 53.3 476 70-566 229-706 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 2.3E-66 5E-71 550.3 51.8 478 70-565 159-639 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2E-64 4.4E-69 522.9 53.3 462 71-549 95-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.1E-64 4.7E-69 522.7 51.1 458 94-566 83-543 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.1E-30 1.1E-34 279.4 61.5 482 72-566 372-886 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7.2E-30 1.6E-34 278.2 61.7 482 71-565 337-851 (899)
9 PRK11447 cellulose synthase su 100.0 1.3E-22 2.8E-27 221.4 58.8 481 72-565 121-725 (1157)
10 PRK11447 cellulose synthase su 99.9 9E-22 2E-26 214.9 59.1 481 72-565 71-685 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 5.4E-22 1.2E-26 184.0 34.9 440 73-528 58-501 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 2E-21 4.3E-26 180.3 36.3 446 101-561 51-500 (966)
13 PRK09782 bacteriophage N4 rece 99.9 1.2E-18 2.7E-23 181.9 56.8 471 75-566 56-692 (987)
14 TIGR00990 3a0801s09 mitochondr 99.9 6.1E-19 1.3E-23 181.1 50.8 434 100-549 129-574 (615)
15 PRK11788 tetratricopeptide rep 99.9 9.1E-21 2E-25 185.0 34.5 238 276-518 110-354 (389)
16 TIGR00990 3a0801s09 mitochondr 99.9 6.7E-19 1.4E-23 180.7 48.7 424 72-511 136-571 (615)
17 PRK11788 tetratricopeptide rep 99.9 1.2E-20 2.7E-25 184.0 33.2 295 75-376 47-351 (389)
18 PRK10049 pgaA outer membrane p 99.9 4.3E-18 9.3E-23 177.9 52.0 425 97-563 14-472 (765)
19 PRK15174 Vi polysaccharide exp 99.9 1.6E-18 3.4E-23 177.3 43.1 338 71-416 50-391 (656)
20 PRK15174 Vi polysaccharide exp 99.9 3.4E-18 7.4E-23 174.8 44.0 366 101-474 45-418 (656)
21 PRK10049 pgaA outer membrane p 99.9 2.6E-17 5.6E-22 172.1 51.1 421 71-527 23-470 (765)
22 PRK14574 hmsH outer membrane p 99.9 1E-16 2.2E-21 164.2 53.2 450 74-554 45-521 (822)
23 PRK09782 bacteriophage N4 rece 99.9 2.1E-16 4.5E-21 165.4 52.9 241 307-556 476-716 (987)
24 KOG2002 TPR-containing nuclear 99.9 4.1E-17 8.8E-22 159.9 42.9 128 428-557 628-756 (1018)
25 PRK14574 hmsH outer membrane p 99.9 5.9E-16 1.3E-20 158.7 52.2 422 71-523 76-523 (822)
26 KOG2002 TPR-containing nuclear 99.8 4.9E-16 1.1E-20 152.5 43.5 483 71-565 207-730 (1018)
27 KOG2003 TPR repeat-containing 99.8 1E-16 2.2E-21 144.0 31.6 458 101-566 204-709 (840)
28 KOG4422 Uncharacterized conser 99.8 9.5E-15 2.1E-19 130.6 40.9 65 448-512 523-591 (625)
29 KOG0495 HAT repeat protein [RN 99.8 1.2E-13 2.5E-18 130.1 49.4 465 81-565 364-865 (913)
30 KOG4422 Uncharacterized conser 99.8 1.7E-14 3.8E-19 128.9 41.0 432 98-552 116-596 (625)
31 KOG0495 HAT repeat protein [RN 99.8 1.4E-13 3.1E-18 129.5 48.6 451 78-549 391-883 (913)
32 KOG1915 Cell cycle control pro 99.8 1.3E-13 2.9E-18 124.9 45.2 443 97-551 72-541 (677)
33 KOG1915 Cell cycle control pro 99.8 5.3E-13 1.2E-17 121.1 46.0 456 76-547 86-586 (677)
34 KOG2076 RNA polymerase III tra 99.8 2E-13 4.4E-18 133.5 46.4 467 76-546 152-695 (895)
35 KOG2003 TPR repeat-containing 99.7 2.1E-14 4.5E-19 129.3 32.2 458 73-543 211-719 (840)
36 KOG2076 RNA polymerase III tra 99.7 3.6E-12 7.8E-17 125.0 39.8 391 141-545 147-554 (895)
37 PRK10747 putative protoheme IX 99.6 8.8E-13 1.9E-17 127.4 32.9 282 76-370 97-388 (398)
38 TIGR00540 hemY_coli hemY prote 99.6 1.2E-12 2.6E-17 127.2 32.2 293 215-545 96-398 (409)
39 PRK10747 putative protoheme IX 99.6 2.6E-12 5.7E-17 124.1 33.7 291 216-546 97-390 (398)
40 TIGR00540 hemY_coli hemY prote 99.6 2E-12 4.2E-17 125.7 32.9 290 75-370 96-397 (409)
41 PF13429 TPR_15: Tetratricopep 99.6 2.3E-15 5E-20 138.9 11.3 261 103-370 13-275 (280)
42 KOG1155 Anaphase-promoting com 99.6 4.4E-11 9.5E-16 108.7 37.9 378 166-561 162-550 (559)
43 PF13429 TPR_15: Tetratricopep 99.6 5.2E-15 1.1E-19 136.6 12.3 259 71-336 16-276 (280)
44 KOG0547 Translocase of outer m 99.6 1.3E-11 2.9E-16 112.7 33.5 424 101-547 118-567 (606)
45 KOG1155 Anaphase-promoting com 99.6 6.5E-11 1.4E-15 107.6 36.4 364 129-509 160-534 (559)
46 KOG1126 DNA-binding cell divis 99.6 7.9E-13 1.7E-17 125.5 25.0 281 149-440 335-619 (638)
47 KOG1173 Anaphase-promoting com 99.6 2.7E-10 5.8E-15 106.4 40.4 283 271-558 242-530 (611)
48 KOG3785 Uncharacterized conser 99.6 4.8E-11 1E-15 104.7 33.0 449 71-551 30-495 (557)
49 KOG1126 DNA-binding cell divis 99.6 1E-12 2.2E-17 124.8 23.1 289 113-411 334-625 (638)
50 KOG4318 Bicoid mRNA stability 99.6 3.7E-11 8E-16 117.5 33.2 443 85-549 12-597 (1088)
51 COG3071 HemY Uncharacterized e 99.6 7.3E-11 1.6E-15 105.6 32.2 288 76-373 97-391 (400)
52 COG2956 Predicted N-acetylgluc 99.5 3.5E-11 7.5E-16 104.3 28.5 289 76-371 48-346 (389)
53 KOG0547 Translocase of outer m 99.5 6E-11 1.3E-15 108.6 31.4 415 71-510 123-565 (606)
54 COG2956 Predicted N-acetylgluc 99.5 8.5E-11 1.9E-15 102.0 30.2 263 243-510 74-346 (389)
55 KOG1173 Anaphase-promoting com 99.5 1.6E-10 3.4E-15 107.9 33.7 287 236-529 242-534 (611)
56 COG3071 HemY Uncharacterized e 99.5 1.5E-10 3.4E-15 103.6 31.7 60 448-509 329-388 (400)
57 KOG2047 mRNA splicing factor [ 99.5 6.8E-09 1.5E-13 98.5 42.9 223 251-475 360-614 (835)
58 KOG1156 N-terminal acetyltrans 99.5 6.9E-09 1.5E-13 98.7 42.1 460 75-545 19-510 (700)
59 KOG3785 Uncharacterized conser 99.4 1.4E-08 3.1E-13 89.5 37.4 425 72-532 66-536 (557)
60 KOG1156 N-terminal acetyltrans 99.4 2.6E-08 5.7E-13 94.9 41.8 434 101-548 11-470 (700)
61 KOG4162 Predicted calmodulin-b 99.4 3.8E-08 8.3E-13 95.7 43.6 415 129-549 319-786 (799)
62 KOG4318 Bicoid mRNA stability 99.4 3.8E-10 8.1E-15 110.7 29.6 245 119-383 11-276 (1088)
63 KOG2376 Signal recognition par 99.4 3.4E-08 7.4E-13 93.1 39.7 135 427-563 356-504 (652)
64 KOG2047 mRNA splicing factor [ 99.4 2E-07 4.3E-12 88.9 44.7 401 133-545 102-578 (835)
65 KOG1129 TPR repeat-containing 99.4 2.5E-10 5.4E-15 99.2 22.7 241 136-383 226-469 (478)
66 PF12569 NARP1: NMDA receptor- 99.4 1.8E-08 3.9E-13 98.5 38.3 290 72-371 13-333 (517)
67 KOG1174 Anaphase-promoting com 99.4 1.4E-07 3E-12 85.2 40.0 303 250-560 208-514 (564)
68 PRK12370 invasion protein regu 99.4 4.8E-10 1.1E-14 113.4 27.9 269 95-373 253-536 (553)
69 PRK12370 invasion protein regu 99.4 3.3E-10 7.1E-15 114.6 26.1 252 288-549 276-538 (553)
70 KOG2376 Signal recognition par 99.4 4E-08 8.6E-13 92.7 36.5 449 71-543 20-517 (652)
71 TIGR02521 type_IV_pilW type IV 99.4 7.3E-10 1.6E-14 99.8 25.2 201 308-546 31-232 (234)
72 TIGR02521 type_IV_pilW type IV 99.3 1E-09 2.3E-14 98.8 25.7 198 98-299 31-229 (234)
73 KOG1129 TPR repeat-containing 99.3 1.7E-10 3.6E-15 100.2 17.6 230 172-406 227-458 (478)
74 PF13041 PPR_2: PPR repeat fam 99.3 9.3E-12 2E-16 80.2 6.1 49 236-284 1-49 (50)
75 KOG1840 Kinesin light chain [C 99.3 4.8E-09 1E-13 101.1 27.0 243 274-544 200-477 (508)
76 PF13041 PPR_2: PPR repeat fam 99.3 1.2E-11 2.5E-16 79.7 6.3 49 166-214 1-49 (50)
77 KOG4162 Predicted calmodulin-b 99.3 2.4E-07 5.3E-12 90.3 37.1 409 92-511 317-783 (799)
78 PF12569 NARP1: NMDA receptor- 99.2 5.1E-08 1.1E-12 95.4 31.3 129 415-546 197-334 (517)
79 COG3063 PilF Tfp pilus assembl 99.2 4.7E-08 1E-12 81.4 23.8 210 309-556 36-246 (250)
80 COG3063 PilF Tfp pilus assembl 99.2 5.7E-08 1.2E-12 80.9 23.7 208 274-520 36-243 (250)
81 KOG1840 Kinesin light chain [C 99.2 1.8E-08 3.9E-13 97.3 23.8 236 135-370 201-477 (508)
82 PRK11189 lipoprotein NlpI; Pro 99.1 1E-07 2.2E-12 88.3 27.7 219 76-303 39-266 (296)
83 KOG3617 WD40 and TPR repeat-co 99.1 6.8E-07 1.5E-11 87.7 33.4 396 71-535 736-1189(1416)
84 KOG0548 Molecular co-chaperone 99.1 4.1E-07 8.9E-12 85.2 30.1 436 71-563 10-472 (539)
85 PRK11189 lipoprotein NlpI; Pro 99.1 1.3E-07 2.9E-12 87.5 26.7 218 112-338 40-266 (296)
86 KOG4340 Uncharacterized conser 99.1 2.5E-07 5.4E-12 79.9 25.2 51 75-126 22-72 (459)
87 KOG1174 Anaphase-promoting com 99.1 4.7E-06 1E-10 75.6 34.2 167 199-370 228-395 (564)
88 cd05804 StaR_like StaR_like; a 99.1 1.5E-06 3.2E-11 83.8 34.1 268 99-371 7-292 (355)
89 cd05804 StaR_like StaR_like; a 99.0 2E-06 4.3E-11 82.9 33.2 310 204-547 7-337 (355)
90 KOG0985 Vesicle coat protein c 99.0 1.7E-05 3.6E-10 80.0 38.8 391 75-509 850-1306(1666)
91 KOG0985 Vesicle coat protein c 99.0 1.8E-05 3.8E-10 79.9 38.2 84 73-156 653-747 (1666)
92 KOG4340 Uncharacterized conser 99.0 1.8E-06 4E-11 74.7 27.5 316 100-437 12-335 (459)
93 KOG0548 Molecular co-chaperone 99.0 4.2E-06 9.1E-11 78.7 31.1 407 69-529 42-471 (539)
94 KOG1914 mRNA cleavage and poly 99.0 3.4E-05 7.3E-10 72.7 40.7 426 95-548 17-503 (656)
95 KOG1127 TPR repeat-containing 98.9 7.2E-06 1.6E-10 82.5 32.7 455 79-544 474-994 (1238)
96 PF04733 Coatomer_E: Coatomer 98.9 1.3E-07 2.9E-12 86.1 18.6 133 412-549 131-268 (290)
97 KOG3616 Selective LIM binding 98.9 2.1E-05 4.5E-10 76.7 33.7 308 209-563 738-1075(1636)
98 KOG3617 WD40 and TPR repeat-co 98.9 8.9E-05 1.9E-09 73.4 36.7 165 108-299 810-993 (1416)
99 KOG0624 dsRNA-activated protei 98.9 5.2E-05 1.1E-09 67.3 33.5 96 96-197 36-135 (504)
100 KOG2053 Mitochondrial inherita 98.9 0.00015 3.3E-09 72.7 47.2 223 74-303 20-256 (932)
101 PF04733 Coatomer_E: Coatomer 98.9 1.9E-07 4.2E-12 85.0 17.4 122 384-510 138-264 (290)
102 PRK04841 transcriptional regul 98.9 2.8E-05 6E-10 85.1 37.4 30 115-144 292-328 (903)
103 PRK04841 transcriptional regul 98.8 2.1E-05 4.6E-10 86.1 36.0 335 142-476 383-760 (903)
104 KOG1125 TPR repeat-containing 98.8 6.3E-07 1.4E-11 84.7 20.3 223 177-404 294-525 (579)
105 KOG1070 rRNA processing protei 98.8 2E-06 4.3E-11 89.3 25.0 208 235-446 1455-1668(1710)
106 KOG1127 TPR repeat-containing 98.8 1.6E-05 3.5E-10 80.1 30.4 154 72-231 501-658 (1238)
107 KOG1070 rRNA processing protei 98.8 3.7E-06 8E-11 87.5 26.5 216 86-306 1447-1667(1710)
108 KOG1125 TPR repeat-containing 98.8 6.8E-07 1.5E-11 84.6 19.7 217 74-298 296-523 (579)
109 PLN02789 farnesyltranstransfer 98.8 1E-05 2.2E-10 74.9 27.2 226 320-550 49-306 (320)
110 KOG0624 dsRNA-activated protei 98.8 7E-05 1.5E-09 66.5 30.2 316 167-511 37-370 (504)
111 PLN02789 farnesyltranstransfer 98.8 4.4E-06 9.5E-11 77.3 23.4 209 352-564 46-268 (320)
112 KOG3616 Selective LIM binding 98.8 0.00018 3.9E-09 70.5 34.6 192 316-540 740-931 (1636)
113 KOG1914 mRNA cleavage and poly 98.8 0.00022 4.7E-09 67.5 38.4 422 73-498 29-526 (656)
114 KOG1128 Uncharacterized conser 98.8 3.3E-06 7.2E-11 82.2 22.4 213 277-510 402-615 (777)
115 PF12854 PPR_1: PPR repeat 98.7 4.1E-08 8.9E-13 56.5 4.3 31 234-264 3-33 (34)
116 KOG1128 Uncharacterized conser 98.7 8.5E-06 1.8E-10 79.5 22.1 233 240-492 400-633 (777)
117 PF12854 PPR_1: PPR repeat 98.7 3.8E-08 8.2E-13 56.6 4.0 32 163-194 2-33 (34)
118 PRK10370 formate-dependent nit 98.6 8.5E-06 1.8E-10 70.1 18.6 125 425-552 52-179 (198)
119 PRK10370 formate-dependent nit 98.6 8.6E-06 1.9E-10 70.1 17.8 155 351-520 24-181 (198)
120 COG5010 TadD Flp pilus assembl 98.6 1.9E-05 4.2E-10 67.7 19.0 156 384-543 73-228 (257)
121 PRK15359 type III secretion sy 98.6 8E-06 1.7E-10 66.4 16.3 106 450-557 27-132 (144)
122 KOG3081 Vesicle coat complex C 98.5 0.00019 4.2E-09 61.7 24.2 125 420-549 145-274 (299)
123 TIGR03302 OM_YfiO outer membra 98.5 2.1E-05 4.5E-10 70.7 20.2 187 342-548 32-234 (235)
124 COG5010 TadD Flp pilus assembl 98.5 4.6E-05 9.9E-10 65.5 20.3 159 137-299 70-228 (257)
125 KOG3081 Vesicle coat complex C 98.5 0.00017 3.6E-09 62.1 23.5 250 106-372 16-271 (299)
126 PRK14720 transcript cleavage f 98.5 5.7E-05 1.2E-09 78.1 24.4 58 272-330 30-87 (906)
127 TIGR03302 OM_YfiO outer membra 98.5 2.3E-05 5E-10 70.4 19.6 64 133-197 33-99 (235)
128 PRK15179 Vi polysaccharide bio 98.5 7E-05 1.5E-09 76.7 24.8 134 412-549 86-220 (694)
129 PRK15179 Vi polysaccharide bio 98.4 0.00012 2.5E-09 75.1 24.9 135 340-476 83-217 (694)
130 PRK15359 type III secretion sy 98.4 2.3E-05 5.1E-10 63.6 16.3 106 414-523 26-132 (144)
131 PRK14720 transcript cleavage f 98.4 0.00014 3.1E-09 75.3 24.2 215 96-319 29-268 (906)
132 COG4783 Putative Zn-dependent 98.4 0.00015 3.2E-09 68.0 21.8 113 352-468 315-429 (484)
133 KOG3060 Uncharacterized conser 98.4 0.00031 6.7E-09 60.0 21.5 156 352-510 61-219 (289)
134 KOG2053 Mitochondrial inherita 98.3 0.005 1.1E-07 62.4 47.2 449 73-538 53-562 (932)
135 TIGR02552 LcrH_SycD type III s 98.3 3.6E-05 7.9E-10 62.2 14.7 103 448-552 18-120 (135)
136 KOG2041 WD40 repeat protein [G 98.2 0.0062 1.3E-07 59.8 30.6 205 130-369 689-904 (1189)
137 TIGR02552 LcrH_SycD type III s 98.2 6.5E-05 1.4E-09 60.7 14.4 105 413-521 18-122 (135)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00011 2.4E-09 69.5 15.6 131 415-552 172-303 (395)
139 KOG3060 Uncharacterized conser 98.1 0.0011 2.3E-08 56.8 19.6 197 355-556 24-230 (289)
140 COG4783 Putative Zn-dependent 98.1 0.00027 5.9E-09 66.3 17.6 151 377-549 306-457 (484)
141 TIGR00756 PPR pentatricopeptid 98.1 5.7E-06 1.2E-10 48.4 4.0 33 170-202 2-34 (35)
142 TIGR00756 PPR pentatricopeptid 98.1 7.5E-06 1.6E-10 47.9 4.3 33 484-516 2-34 (35)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00033 7.1E-09 66.4 17.1 123 171-300 172-295 (395)
144 PF09976 TPR_21: Tetratricopep 98.0 0.00025 5.3E-09 57.9 14.3 126 415-543 15-144 (145)
145 PF09976 TPR_21: Tetratricopep 98.0 0.00046 1E-08 56.3 15.6 116 216-333 24-143 (145)
146 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.4E-10 46.8 4.2 32 170-201 3-34 (34)
147 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.7E-10 46.6 4.2 32 484-515 3-34 (34)
148 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00033 7.1E-09 55.0 13.7 107 449-555 4-114 (119)
149 cd00189 TPR Tetratricopeptide 97.9 0.00027 5.9E-09 52.7 11.2 94 452-547 5-98 (100)
150 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.027 5.9E-07 52.6 31.1 443 84-549 30-534 (660)
151 PF05843 Suf: Suppressor of fo 97.8 0.00051 1.1E-08 62.9 13.9 130 99-232 2-136 (280)
152 PLN03088 SGT1, suppressor of 97.8 0.00078 1.7E-08 64.1 15.2 104 418-525 8-111 (356)
153 PF05843 Suf: Suppressor of fo 97.8 0.0006 1.3E-08 62.5 13.8 145 414-562 3-151 (280)
154 KOG2041 WD40 repeat protein [G 97.8 0.046 9.9E-07 54.1 27.2 206 95-333 689-903 (1189)
155 PRK10866 outer membrane biogen 97.8 0.0046 9.9E-08 55.2 19.0 58 487-544 180-239 (243)
156 PF10037 MRP-S27: Mitochondria 97.8 0.00054 1.2E-08 65.2 13.5 121 96-216 64-186 (429)
157 PF10037 MRP-S27: Mitochondria 97.8 0.00046 9.9E-09 65.7 13.0 105 390-494 79-185 (429)
158 PRK02603 photosystem I assembl 97.8 0.0014 3.1E-08 55.3 14.6 87 413-500 36-124 (172)
159 KOG0553 TPR repeat-containing 97.7 0.00043 9.4E-09 60.9 10.9 101 421-525 90-190 (304)
160 PF01535 PPR: PPR repeat; Int 97.7 4.5E-05 9.7E-10 43.0 3.3 28 170-197 2-29 (31)
161 PF01535 PPR: PPR repeat; Int 97.7 5.2E-05 1.1E-09 42.8 3.3 28 240-267 2-29 (31)
162 PRK15363 pathogenicity island 97.7 0.0015 3.3E-08 52.3 12.4 96 450-547 38-133 (157)
163 PLN03088 SGT1, suppressor of 97.7 0.0015 3.2E-08 62.2 14.7 92 384-477 9-100 (356)
164 cd00189 TPR Tetratricopeptide 97.7 0.00092 2E-08 49.7 11.0 95 415-511 3-97 (100)
165 PF08579 RPM2: Mitochondrial r 97.6 0.00083 1.8E-08 49.7 9.4 27 257-283 88-114 (120)
166 KOG0550 Molecular chaperone (D 97.6 0.0088 1.9E-07 55.2 17.7 159 352-511 178-350 (486)
167 KOG0553 TPR repeat-containing 97.6 0.00099 2.1E-08 58.7 11.3 152 384-545 88-244 (304)
168 PF08579 RPM2: Mitochondrial r 97.6 0.0013 2.8E-08 48.8 10.1 77 174-250 31-116 (120)
169 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0031 6.7E-08 49.4 13.6 97 415-511 5-105 (119)
170 PF12895 Apc3: Anaphase-promot 97.6 0.00012 2.6E-09 53.2 4.8 79 461-542 3-83 (84)
171 PF12895 Apc3: Anaphase-promot 97.6 0.00016 3.5E-09 52.5 5.3 82 425-508 2-84 (84)
172 PRK10153 DNA-binding transcrip 97.6 0.007 1.5E-07 60.4 18.1 141 407-551 332-487 (517)
173 PRK02603 photosystem I assembl 97.5 0.0055 1.2E-07 51.7 15.1 101 449-550 37-153 (172)
174 PRK15363 pathogenicity island 97.5 0.0032 6.9E-08 50.5 12.0 88 281-370 43-130 (157)
175 PF13432 TPR_16: Tetratricopep 97.5 0.00057 1.2E-08 46.7 7.0 61 489-550 4-64 (65)
176 PRK10866 outer membrane biogen 97.5 0.022 4.8E-07 50.9 18.3 52 75-127 44-98 (243)
177 PF14938 SNAP: Soluble NSF att 97.5 0.011 2.4E-07 54.5 17.0 207 309-547 36-264 (282)
178 CHL00033 ycf3 photosystem I as 97.5 0.0037 8E-08 52.6 12.9 112 79-191 15-136 (168)
179 CHL00033 ycf3 photosystem I as 97.4 0.0034 7.4E-08 52.8 12.5 80 413-493 36-117 (168)
180 PF12688 TPR_5: Tetratrico pep 97.4 0.0088 1.9E-07 46.2 13.5 91 419-509 8-102 (120)
181 PF14938 SNAP: Soluble NSF att 97.4 0.029 6.2E-07 51.7 19.1 168 104-302 41-225 (282)
182 PF06239 ECSIT: Evolutionarily 97.4 0.0022 4.7E-08 54.0 10.4 116 82-218 33-153 (228)
183 PF06239 ECSIT: Evolutionarily 97.4 0.0036 7.7E-08 52.8 11.5 86 411-496 46-152 (228)
184 PF13414 TPR_11: TPR repeat; P 97.4 0.00096 2.1E-08 46.2 6.9 67 481-548 2-69 (69)
185 PF07079 DUF1347: Protein of u 97.3 0.16 3.4E-06 47.9 43.6 441 74-545 17-523 (549)
186 PF14559 TPR_19: Tetratricopep 97.3 0.00091 2E-08 46.2 5.9 51 459-510 3-53 (68)
187 COG4235 Cytochrome c biogenesi 97.3 0.029 6.3E-07 50.0 16.2 104 446-551 155-261 (287)
188 PRK10153 DNA-binding transcrip 97.2 0.027 5.9E-07 56.3 18.1 135 130-267 334-482 (517)
189 PRK10803 tol-pal system protei 97.2 0.01 2.2E-07 53.5 13.6 102 449-552 145-252 (263)
190 PF13432 TPR_16: Tetratricopep 97.2 0.0015 3.3E-08 44.5 6.7 57 453-510 3-59 (65)
191 PF13525 YfiO: Outer membrane 97.2 0.041 8.8E-07 47.8 17.1 47 488-536 147-197 (203)
192 PF14559 TPR_19: Tetratricopep 97.2 0.0012 2.6E-08 45.6 6.2 56 494-550 3-58 (68)
193 KOG0550 Molecular chaperone (D 97.2 0.19 4.1E-06 46.8 22.9 263 71-337 57-350 (486)
194 PF13525 YfiO: Outer membrane 97.2 0.056 1.2E-06 47.0 17.6 42 524-565 148-192 (203)
195 COG4235 Cytochrome c biogenesi 97.2 0.022 4.7E-07 50.8 14.7 111 411-525 155-268 (287)
196 KOG2796 Uncharacterized conser 97.1 0.12 2.7E-06 44.9 18.1 132 170-302 179-315 (366)
197 PF13414 TPR_11: TPR repeat; P 97.1 0.002 4.4E-08 44.6 6.3 63 447-510 3-66 (69)
198 PF12688 TPR_5: Tetratrico pep 97.1 0.055 1.2E-06 41.9 14.4 56 106-161 9-66 (120)
199 COG4700 Uncharacterized protei 97.0 0.092 2E-06 43.1 15.6 122 384-507 96-218 (251)
200 KOG1538 Uncharacterized conser 97.0 0.14 3E-06 50.4 19.5 22 490-511 825-846 (1081)
201 KOG1258 mRNA processing protei 97.0 0.44 9.4E-06 46.9 32.9 130 100-232 47-180 (577)
202 KOG2114 Vacuolar assembly/sort 97.0 0.55 1.2E-05 48.0 25.8 142 106-265 376-517 (933)
203 COG3898 Uncharacterized membra 97.0 0.31 6.8E-06 45.1 31.6 280 251-546 97-392 (531)
204 PF13371 TPR_9: Tetratricopept 96.9 0.0095 2.1E-07 41.7 8.2 60 491-551 4-63 (73)
205 COG3898 Uncharacterized membra 96.9 0.39 8.5E-06 44.5 29.5 298 171-515 85-396 (531)
206 KOG2280 Vacuolar assembly/sort 96.8 0.71 1.5E-05 46.6 27.0 107 415-540 687-793 (829)
207 PF13281 DUF4071: Domain of un 96.8 0.47 1E-05 44.7 20.5 36 515-550 303-338 (374)
208 PF03704 BTAD: Bacterial trans 96.8 0.048 1E-06 44.5 12.7 56 487-543 67-122 (146)
209 PF04840 Vps16_C: Vps16, C-ter 96.8 0.48 1E-05 44.1 26.6 109 274-401 178-286 (319)
210 PF13371 TPR_9: Tetratricopept 96.7 0.012 2.5E-07 41.2 7.7 56 455-511 3-58 (73)
211 PRK10803 tol-pal system protei 96.7 0.039 8.5E-07 49.7 12.3 100 414-517 145-250 (263)
212 PRK15331 chaperone protein Sic 96.7 0.13 2.8E-06 41.8 13.8 87 457-545 47-133 (165)
213 KOG1538 Uncharacterized conser 96.6 0.45 9.8E-06 47.0 19.6 54 102-158 602-657 (1081)
214 COG4700 Uncharacterized protei 96.6 0.33 7.1E-06 40.0 18.5 102 131-232 87-189 (251)
215 KOG1130 Predicted G-alpha GTPa 96.6 0.016 3.5E-07 53.4 9.2 131 241-371 198-343 (639)
216 KOG2796 Uncharacterized conser 96.5 0.53 1.1E-05 41.2 21.8 135 274-408 178-317 (366)
217 KOG1130 Predicted G-alpha GTPa 96.4 0.052 1.1E-06 50.3 11.3 97 274-370 196-302 (639)
218 COG4105 ComL DNA uptake lipopr 96.3 0.66 1.4E-05 40.7 17.6 174 376-550 33-237 (254)
219 PF12921 ATP13: Mitochondrial 96.3 0.064 1.4E-06 42.0 10.1 52 477-528 47-99 (126)
220 KOG2280 Vacuolar assembly/sort 96.3 1.5 3.2E-05 44.5 27.0 331 138-507 442-795 (829)
221 COG4105 ComL DNA uptake lipopr 96.3 0.7 1.5E-05 40.6 19.2 54 74-127 45-100 (254)
222 PF12921 ATP13: Mitochondrial 96.3 0.078 1.7E-06 41.5 10.4 85 411-495 1-101 (126)
223 PF03704 BTAD: Bacterial trans 96.3 0.23 4.9E-06 40.5 13.9 111 411-522 2-141 (146)
224 PF13424 TPR_12: Tetratricopep 96.3 0.011 2.5E-07 41.9 5.4 61 484-544 7-73 (78)
225 PRK15331 chaperone protein Sic 96.2 0.19 4.1E-06 40.9 12.3 87 422-510 47-133 (165)
226 PRK11906 transcriptional regul 96.2 0.34 7.4E-06 46.5 15.8 146 392-542 273-432 (458)
227 COG3118 Thioredoxin domain-con 96.2 0.62 1.3E-05 41.7 16.2 140 423-565 145-286 (304)
228 PF13424 TPR_12: Tetratricopep 96.1 0.022 4.8E-07 40.4 6.2 62 449-510 7-74 (78)
229 PF04184 ST7: ST7 protein; In 96.0 0.78 1.7E-05 44.2 17.3 58 452-509 264-322 (539)
230 KOG4555 TPR repeat-containing 96.0 0.24 5.1E-06 38.1 11.1 52 422-474 53-104 (175)
231 PF13428 TPR_14: Tetratricopep 96.0 0.028 6.1E-07 34.5 5.3 40 519-558 3-42 (44)
232 PF04840 Vps16_C: Vps16, C-ter 95.9 1.5 3.3E-05 40.9 31.1 103 385-507 185-287 (319)
233 PF13281 DUF4071: Domain of un 95.9 1.7 3.6E-05 41.2 19.9 32 480-511 303-334 (374)
234 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.2 4.3E-06 47.9 12.6 63 412-476 75-141 (453)
235 KOG1920 IkappaB kinase complex 95.8 3.4 7.3E-05 44.5 22.3 109 241-369 942-1052(1265)
236 KOG1585 Protein required for f 95.8 1.2 2.6E-05 38.7 17.0 205 100-331 33-250 (308)
237 COG3118 Thioredoxin domain-con 95.6 1.6 3.4E-05 39.3 17.7 149 104-255 140-289 (304)
238 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.49 1.1E-05 45.4 14.2 66 95-162 72-141 (453)
239 KOG4555 TPR repeat-containing 95.5 0.44 9.6E-06 36.7 11.0 90 73-163 53-145 (175)
240 smart00299 CLH Clathrin heavy 95.5 1 2.2E-05 36.3 15.5 42 103-145 12-53 (140)
241 PF09205 DUF1955: Domain of un 95.5 0.84 1.8E-05 35.3 14.3 62 277-339 90-151 (161)
242 COG1729 Uncharacterized protei 95.5 0.52 1.1E-05 41.7 13.1 106 450-556 145-254 (262)
243 PF10300 DUF3808: Protein of u 95.4 1.1 2.3E-05 44.7 16.8 179 116-301 175-375 (468)
244 KOG0543 FKBP-type peptidyl-pro 95.4 0.22 4.7E-06 46.5 11.0 129 418-549 214-358 (397)
245 PF10300 DUF3808: Protein of u 95.4 3.4 7.3E-05 41.2 21.3 116 356-474 246-374 (468)
246 PF04184 ST7: ST7 protein; In 95.3 3 6.5E-05 40.5 19.3 56 244-299 265-321 (539)
247 PF04053 Coatomer_WDAD: Coatom 95.3 0.94 2E-05 44.4 15.7 156 179-368 272-427 (443)
248 PF04053 Coatomer_WDAD: Coatom 95.3 0.47 1E-05 46.4 13.6 157 107-299 270-428 (443)
249 COG5107 RNA14 Pre-mRNA 3'-end 95.3 2.8 6E-05 40.0 33.6 436 71-529 50-547 (660)
250 KOG0543 FKBP-type peptidyl-pro 95.3 0.97 2.1E-05 42.4 14.6 97 413-511 258-355 (397)
251 PF07079 DUF1347: Protein of u 95.2 3 6.4E-05 39.9 40.5 394 100-522 79-530 (549)
252 KOG1258 mRNA processing protei 95.2 3.6 7.8E-05 40.8 33.2 389 132-531 44-489 (577)
253 KOG2396 HAT (Half-A-TPR) repea 95.0 3.8 8.1E-05 39.7 37.6 99 443-544 455-557 (568)
254 KOG1920 IkappaB kinase complex 94.9 6.7 0.00015 42.4 23.1 53 419-474 972-1026(1265)
255 KOG3941 Intermediate in Toll s 94.9 0.21 4.6E-06 44.0 8.8 105 95-218 64-173 (406)
256 KOG1585 Protein required for f 94.9 2.3 5E-05 37.0 15.5 56 449-505 192-250 (308)
257 KOG3941 Intermediate in Toll s 94.9 0.23 4.9E-06 43.8 8.8 88 411-498 66-174 (406)
258 COG1729 Uncharacterized protei 94.8 0.58 1.2E-05 41.5 11.4 97 414-511 144-244 (262)
259 PF09205 DUF1955: Domain of un 94.7 1.5 3.3E-05 34.0 12.3 59 453-512 92-150 (161)
260 PF08631 SPO22: Meiosis protei 94.7 3.5 7.6E-05 37.9 24.5 19 526-544 255-273 (278)
261 PF13512 TPR_18: Tetratricopep 94.7 1 2.2E-05 35.8 11.3 81 379-459 12-94 (142)
262 PF13170 DUF4003: Protein of u 94.6 3.7 8E-05 37.9 20.5 98 393-492 119-227 (297)
263 PF13512 TPR_18: Tetratricopep 94.5 1.8 4E-05 34.4 12.5 117 420-554 18-136 (142)
264 KOG2610 Uncharacterized conser 94.5 1.1 2.4E-05 40.7 12.5 154 108-264 113-273 (491)
265 COG0457 NrfG FOG: TPR repeat [ 94.4 3.4 7.3E-05 36.4 28.2 189 287-475 37-230 (291)
266 KOG2610 Uncharacterized conser 94.3 1.6 3.6E-05 39.7 13.0 153 353-507 113-272 (491)
267 COG4649 Uncharacterized protei 94.2 2.7 5.7E-05 34.5 13.6 120 319-439 69-194 (221)
268 KOG2114 Vacuolar assembly/sort 94.2 8.2 0.00018 40.1 29.0 177 101-300 337-517 (933)
269 PF13428 TPR_14: Tetratricopep 94.1 0.22 4.7E-06 30.5 5.3 28 484-511 3-30 (44)
270 smart00299 CLH Clathrin heavy 94.0 2.6 5.6E-05 33.9 15.9 43 138-181 12-54 (140)
271 PRK11906 transcriptional regul 93.9 4.9 0.00011 38.9 16.1 162 344-509 252-434 (458)
272 PF10345 Cohesin_load: Cohesin 93.8 9.8 0.00021 39.7 36.3 190 355-545 373-605 (608)
273 PF07035 Mic1: Colon cancer-as 93.8 3.3 7.2E-05 34.2 15.5 29 157-185 18-46 (167)
274 COG4649 Uncharacterized protei 93.3 4 8.6E-05 33.5 15.7 61 492-552 142-202 (221)
275 KOG2066 Vacuolar assembly/sort 93.2 11 0.00025 38.7 29.7 151 175-335 363-532 (846)
276 COG0457 NrfG FOG: TPR repeat [ 93.2 5.6 0.00012 35.0 28.9 189 112-301 37-230 (291)
277 COG3629 DnrI DNA-binding trans 93.1 1.2 2.7E-05 40.1 10.4 77 449-526 155-236 (280)
278 PF13170 DUF4003: Protein of u 93.1 5.4 0.00012 36.8 14.8 130 79-210 78-224 (297)
279 PF08631 SPO22: Meiosis protei 93.1 7.1 0.00015 35.9 25.1 50 75-125 5-63 (278)
280 KOG1941 Acetylcholine receptor 93.1 4.2 9E-05 37.7 13.5 125 418-543 128-272 (518)
281 KOG1550 Extracellular protein 93.0 7.1 0.00015 40.0 17.2 119 427-549 308-429 (552)
282 KOG1941 Acetylcholine receptor 92.8 3.4 7.4E-05 38.2 12.6 200 135-335 45-273 (518)
283 PF10345 Cohesin_load: Cohesin 92.8 14 0.0003 38.6 39.7 429 80-510 38-605 (608)
284 COG3629 DnrI DNA-binding trans 92.6 1.4 3E-05 39.8 9.9 59 136-195 156-214 (280)
285 PF10602 RPN7: 26S proteasome 92.6 2 4.3E-05 36.2 10.5 60 170-229 38-99 (177)
286 KOG0890 Protein kinase of the 92.5 28 0.0006 41.2 25.5 151 208-366 1388-1541(2382)
287 KOG2066 Vacuolar assembly/sort 92.3 15 0.00033 37.9 25.2 74 106-185 364-440 (846)
288 cd00923 Cyt_c_Oxidase_Va Cytoc 92.2 1.4 3.1E-05 31.9 7.5 44 501-544 26-69 (103)
289 PF02259 FAT: FAT domain; Int 92.1 11 0.00025 35.9 22.6 65 411-475 145-212 (352)
290 PF09613 HrpB1_HrpK: Bacterial 92.0 5.8 0.00012 32.3 12.9 53 422-476 20-73 (160)
291 PF02284 COX5A: Cytochrome c o 92.0 3.3 7.1E-05 30.5 9.3 49 501-549 29-77 (108)
292 PF07035 Mic1: Colon cancer-as 91.8 6.5 0.00014 32.5 15.6 134 189-336 15-148 (167)
293 PF07719 TPR_2: Tetratricopept 91.8 0.59 1.3E-05 26.3 4.7 30 519-548 3-32 (34)
294 PF10602 RPN7: 26S proteasome 91.7 1.7 3.8E-05 36.5 9.2 60 311-370 39-100 (177)
295 KOG4570 Uncharacterized conser 91.6 3.8 8.1E-05 37.1 11.1 50 498-547 116-165 (418)
296 PF13176 TPR_7: Tetratricopept 91.2 0.54 1.2E-05 27.2 4.1 26 519-544 1-26 (36)
297 KOG1550 Extracellular protein 91.1 20 0.00044 36.8 24.8 178 114-303 228-427 (552)
298 PF13176 TPR_7: Tetratricopept 90.8 0.57 1.2E-05 27.1 3.9 26 484-509 1-26 (36)
299 PF00515 TPR_1: Tetratricopept 90.7 0.85 1.8E-05 25.8 4.6 30 519-548 3-32 (34)
300 PF00637 Clathrin: Region in C 90.5 0.021 4.7E-07 46.4 -3.3 53 140-192 14-66 (143)
301 COG4785 NlpI Lipoprotein NlpI, 90.4 11 0.00023 32.5 15.8 159 344-511 100-266 (297)
302 PF13431 TPR_17: Tetratricopep 90.2 0.34 7.5E-06 27.6 2.5 15 484-498 15-29 (34)
303 COG4785 NlpI Lipoprotein NlpI, 89.9 12 0.00026 32.2 15.3 160 308-476 99-266 (297)
304 KOG4648 Uncharacterized conser 89.8 2.2 4.8E-05 39.0 8.3 54 419-474 104-158 (536)
305 PF00515 TPR_1: Tetratricopept 89.1 0.95 2.1E-05 25.5 3.9 27 484-510 3-29 (34)
306 KOG4234 TPR repeat-containing 88.9 11 0.00024 31.9 11.1 90 421-511 104-197 (271)
307 PRK15180 Vi polysaccharide bio 88.6 3 6.6E-05 40.0 8.6 137 384-525 296-433 (831)
308 KOG2062 26S proteasome regulat 87.9 36 0.00077 35.2 31.3 176 81-267 41-239 (929)
309 PF11207 DUF2989: Protein of u 87.7 6.3 0.00014 33.5 9.2 71 395-466 124-197 (203)
310 COG3947 Response regulator con 87.5 22 0.00047 32.2 15.2 59 311-370 282-340 (361)
311 PRK09687 putative lyase; Provi 87.4 23 0.0005 32.5 25.8 61 481-548 205-265 (280)
312 PF13431 TPR_17: Tetratricopep 87.4 1 2.2E-05 25.6 3.2 24 95-118 10-33 (34)
313 cd00923 Cyt_c_Oxidase_Va Cytoc 87.3 4.9 0.00011 29.3 7.1 48 427-474 22-69 (103)
314 PF07719 TPR_2: Tetratricopept 87.3 1.4 3.1E-05 24.7 3.9 27 484-510 3-29 (34)
315 COG1747 Uncharacterized N-term 87.3 32 0.00069 33.9 22.8 31 342-372 65-95 (711)
316 KOG0276 Vesicle coat complex C 87.2 9.7 0.00021 38.0 11.3 99 144-263 648-746 (794)
317 KOG4570 Uncharacterized conser 87.1 5.1 0.00011 36.3 8.7 55 386-440 109-163 (418)
318 KOG4507 Uncharacterized conser 86.8 3.4 7.3E-05 40.8 8.0 132 431-564 592-723 (886)
319 COG3947 Response regulator con 86.7 24 0.00053 31.9 14.7 59 347-405 283-341 (361)
320 PF02284 COX5A: Cytochrome c o 86.4 7.2 0.00016 28.8 7.6 59 430-490 28-87 (108)
321 PF11207 DUF2989: Protein of u 86.4 12 0.00025 31.9 10.1 74 184-258 122-198 (203)
322 PF13174 TPR_6: Tetratricopept 85.5 1.8 3.9E-05 24.0 3.7 26 523-548 6-31 (33)
323 KOG1586 Protein required for f 84.9 26 0.00056 30.6 15.0 19 493-511 165-183 (288)
324 KOG2063 Vacuolar assembly/sort 84.6 51 0.0011 35.4 15.8 116 205-320 506-638 (877)
325 PF09613 HrpB1_HrpK: Bacterial 84.0 22 0.00048 29.1 12.6 16 356-371 23-38 (160)
326 KOG4234 TPR repeat-containing 83.6 11 0.00023 32.0 8.4 89 318-406 105-197 (271)
327 KOG3364 Membrane protein invol 83.5 20 0.00043 28.2 9.7 74 479-553 29-107 (149)
328 KOG4077 Cytochrome c oxidase, 83.4 19 0.00041 27.9 10.1 60 501-560 68-127 (149)
329 PF13181 TPR_8: Tetratricopept 83.3 2.8 6E-05 23.5 3.8 27 520-546 4-30 (34)
330 PF13374 TPR_10: Tetratricopep 83.2 3.3 7.3E-05 24.4 4.4 28 518-545 3-30 (42)
331 PF13374 TPR_10: Tetratricopep 83.2 3.3 7.2E-05 24.4 4.4 27 169-195 3-29 (42)
332 PF13929 mRNA_stabil: mRNA sta 83.1 36 0.00078 30.9 13.8 63 235-297 199-262 (292)
333 KOG0276 Vesicle coat complex C 82.3 24 0.00053 35.4 11.6 133 344-508 615-747 (794)
334 COG2909 MalT ATP-dependent tra 81.8 77 0.0017 33.8 26.4 225 283-507 425-684 (894)
335 KOG2471 TPR repeat-containing 81.7 12 0.00026 36.3 9.1 38 491-529 344-381 (696)
336 KOG0530 Protein farnesyltransf 81.3 40 0.00086 30.1 17.0 166 393-562 94-270 (318)
337 PF00637 Clathrin: Region in C 81.1 0.41 8.8E-06 38.8 -0.5 86 417-509 12-97 (143)
338 COG2976 Uncharacterized protei 81.0 33 0.00072 29.1 13.8 55 491-547 135-189 (207)
339 KOG4648 Uncharacterized conser 80.5 11 0.00023 34.8 8.0 90 384-475 104-193 (536)
340 COG4455 ImpE Protein of avirul 79.8 17 0.00037 31.3 8.4 76 449-525 3-80 (273)
341 COG1747 Uncharacterized N-term 79.0 71 0.0015 31.7 22.1 177 132-316 65-247 (711)
342 PF06552 TOM20_plant: Plant sp 79.0 16 0.00035 30.4 8.0 26 500-527 98-123 (186)
343 TIGR03504 FimV_Cterm FimV C-te 78.5 4.2 9.2E-05 24.8 3.5 27 522-548 4-30 (44)
344 PRK09687 putative lyase; Provi 78.3 56 0.0012 30.1 25.8 87 430-528 192-278 (280)
345 PHA02875 ankyrin repeat protei 77.6 62 0.0014 31.8 13.6 206 283-518 9-231 (413)
346 COG2976 Uncharacterized protei 76.9 45 0.00098 28.3 14.3 129 378-512 54-189 (207)
347 PF13181 TPR_8: Tetratricopept 76.7 7.2 0.00016 21.7 4.1 28 483-510 2-29 (34)
348 PF13174 TPR_6: Tetratricopept 76.4 4 8.7E-05 22.5 3.0 25 487-511 5-29 (33)
349 KOG0991 Replication factor C, 76.3 53 0.0012 28.8 12.9 71 457-529 202-284 (333)
350 KOG0890 Protein kinase of the 76.3 1.9E+02 0.004 35.0 28.4 319 173-511 1388-1731(2382)
351 PF14853 Fis1_TPR_C: Fis1 C-te 74.9 15 0.00032 23.6 5.4 30 524-553 8-37 (53)
352 TIGR02561 HrpB1_HrpK type III 74.6 44 0.00095 27.0 11.0 18 354-371 55-72 (153)
353 TIGR02561 HrpB1_HrpK type III 73.8 46 0.00099 26.9 11.4 52 423-476 21-73 (153)
354 KOG4507 Uncharacterized conser 73.5 24 0.00052 35.3 8.7 86 111-197 620-705 (886)
355 COG4455 ImpE Protein of avirul 73.3 35 0.00076 29.5 8.6 77 414-491 3-81 (273)
356 PF08424 NRDE-2: NRDE-2, neces 73.2 84 0.0018 29.6 17.0 119 429-549 48-186 (321)
357 TIGR03504 FimV_Cterm FimV C-te 73.2 8.6 0.00019 23.4 3.8 23 488-510 5-27 (44)
358 PF07163 Pex26: Pex26 protein; 73.1 41 0.00088 30.4 9.3 18 210-227 90-107 (309)
359 COG0735 Fur Fe2+/Zn2+ uptake r 71.8 25 0.00055 28.4 7.5 62 504-566 8-70 (145)
360 PF07163 Pex26: Pex26 protein; 71.4 60 0.0013 29.4 10.0 89 173-261 88-181 (309)
361 KOG2063 Vacuolar assembly/sort 70.8 1.6E+02 0.0035 31.9 25.9 41 384-424 598-638 (877)
362 KOG2471 TPR repeat-containing 70.7 1.1E+02 0.0025 30.1 13.4 42 109-150 28-69 (696)
363 KOG1586 Protein required for f 69.7 79 0.0017 27.8 20.8 24 355-378 166-189 (288)
364 COG2909 MalT ATP-dependent tra 69.6 1.6E+02 0.0036 31.5 28.1 224 319-542 426-684 (894)
365 PF07575 Nucleopor_Nup85: Nup8 69.2 1.5E+02 0.0032 30.8 16.2 30 494-523 507-536 (566)
366 KOG4077 Cytochrome c oxidase, 69.2 35 0.00076 26.5 7.0 45 430-474 67-111 (149)
367 PF13929 mRNA_stabil: mRNA sta 68.6 95 0.0021 28.4 18.5 199 79-282 71-287 (292)
368 PF10579 Rapsyn_N: Rapsyn N-te 68.2 19 0.0004 25.3 5.0 47 494-540 18-66 (80)
369 PF06552 TOM20_plant: Plant sp 67.7 44 0.00095 28.0 7.9 21 533-553 96-116 (186)
370 smart00028 TPR Tetratricopepti 67.3 13 0.00029 19.4 3.9 26 485-510 4-29 (34)
371 KOG2297 Predicted translation 67.2 1E+02 0.0022 28.3 15.8 17 275-291 323-339 (412)
372 KOG1464 COP9 signalosome, subu 67.0 96 0.0021 27.8 21.8 174 198-371 21-219 (440)
373 PF11663 Toxin_YhaV: Toxin wit 66.7 6.7 0.00015 30.6 3.0 34 72-107 104-137 (140)
374 TIGR02508 type_III_yscG type I 66.6 51 0.0011 24.5 8.2 52 246-303 47-98 (115)
375 PF11846 DUF3366: Domain of un 65.1 39 0.00085 28.9 7.9 35 514-548 141-175 (193)
376 PF04097 Nic96: Nup93/Nic96; 64.8 1.9E+02 0.0041 30.4 24.9 17 492-508 515-531 (613)
377 COG5159 RPN6 26S proteasome re 64.6 1.1E+02 0.0024 27.8 11.2 52 105-156 10-68 (421)
378 TIGR02508 type_III_yscG type I 62.2 63 0.0014 24.0 7.0 51 107-163 48-98 (115)
379 PRK08691 DNA polymerase III su 61.7 2.1E+02 0.0046 30.3 13.2 85 428-515 180-278 (709)
380 KOG0292 Vesicle coat complex C 61.7 2.3E+02 0.0051 30.4 24.8 105 459-563 1003-1131(1202)
381 PF11663 Toxin_YhaV: Toxin wit 61.7 12 0.00026 29.3 3.5 29 146-176 108-136 (140)
382 cd08819 CARD_MDA5_2 Caspase ac 60.4 62 0.0013 23.3 6.8 14 217-230 50-63 (88)
383 PRK10941 hypothetical protein; 60.3 1.4E+02 0.003 27.3 10.7 78 451-529 185-263 (269)
384 PF09986 DUF2225: Uncharacteri 60.3 1.2E+02 0.0026 26.6 11.7 52 500-551 143-199 (214)
385 KOG2396 HAT (Half-A-TPR) repea 59.8 1.9E+02 0.0041 28.8 36.1 414 81-511 89-559 (568)
386 PF14689 SPOB_a: Sensor_kinase 59.6 26 0.00055 23.4 4.4 30 481-510 22-51 (62)
387 PF10579 Rapsyn_N: Rapsyn N-te 59.4 35 0.00076 24.0 5.0 47 424-470 18-66 (80)
388 KOG0128 RNA-binding protein SA 59.1 2.5E+02 0.0054 29.9 30.7 97 132-231 112-218 (881)
389 PF08424 NRDE-2: NRDE-2, neces 58.6 1.7E+02 0.0036 27.7 17.5 107 86-195 8-129 (321)
390 PF04097 Nic96: Nup93/Nic96; 58.1 2.4E+02 0.0053 29.5 19.3 43 208-251 116-158 (613)
391 PHA02875 ankyrin repeat protei 57.1 2E+02 0.0044 28.2 17.3 79 211-297 7-89 (413)
392 PF14689 SPOB_a: Sensor_kinase 56.9 34 0.00074 22.8 4.7 22 243-264 28-49 (62)
393 PRK07003 DNA polymerase III su 56.8 2.5E+02 0.0053 30.2 12.7 84 428-514 180-277 (830)
394 PF02259 FAT: FAT domain; Int 56.7 1.8E+02 0.0039 27.6 25.3 58 384-441 153-213 (352)
395 PF13934 ELYS: Nuclear pore co 55.8 1.1E+02 0.0024 27.1 9.0 20 104-123 114-133 (226)
396 COG0790 FOG: TPR repeat, SEL1 55.7 1.7E+02 0.0037 27.0 22.1 151 74-233 52-221 (292)
397 PRK14951 DNA polymerase III su 55.4 2.7E+02 0.0058 29.2 13.4 84 429-515 186-283 (618)
398 PF14561 TPR_20: Tetratricopep 54.5 82 0.0018 22.9 7.8 52 481-532 21-73 (90)
399 PRK10941 hypothetical protein; 54.3 1.7E+02 0.0038 26.7 11.0 79 485-564 184-264 (269)
400 PRK12798 chemotaxis protein; R 53.9 2.2E+02 0.0048 27.7 20.7 155 389-547 124-287 (421)
401 KOG0991 Replication factor C, 53.8 1.6E+02 0.0034 26.1 14.0 102 457-561 169-282 (333)
402 PF13762 MNE1: Mitochondrial s 53.1 1.2E+02 0.0026 24.5 10.2 82 100-181 41-128 (145)
403 PF11848 DUF3368: Domain of un 53.1 54 0.0012 20.4 5.1 25 496-520 16-40 (48)
404 PRK11619 lytic murein transgly 53.0 3E+02 0.0066 29.1 30.3 117 390-509 254-373 (644)
405 PF11846 DUF3366: Domain of un 52.7 64 0.0014 27.6 7.1 33 478-510 140-172 (193)
406 smart00386 HAT HAT (Half-A-TPR 52.1 36 0.00079 18.2 4.1 14 497-510 2-15 (33)
407 PF11848 DUF3368: Domain of un 52.1 56 0.0012 20.3 5.1 40 520-560 6-46 (48)
408 PF11838 ERAP1_C: ERAP1-like C 51.9 2.1E+02 0.0045 26.9 18.1 81 220-303 147-231 (324)
409 PF08542 Rep_fac_C: Replicatio 51.3 75 0.0016 22.8 6.3 48 481-530 4-51 (89)
410 COG0790 FOG: TPR repeat, SEL1 51.1 2E+02 0.0044 26.5 23.5 151 110-269 53-222 (292)
411 PF12862 Apc5: Anaphase-promot 50.7 97 0.0021 22.7 7.1 18 527-544 51-68 (94)
412 PF12862 Apc5: Anaphase-promot 50.1 72 0.0016 23.3 6.1 53 458-510 9-69 (94)
413 PF04190 DUF410: Protein of un 49.5 2E+02 0.0044 26.1 17.0 25 272-296 89-113 (260)
414 cd00280 TRFH Telomeric Repeat 49.3 1.3E+02 0.0028 25.4 7.6 20 491-510 120-139 (200)
415 PRK14963 DNA polymerase III su 48.9 3.1E+02 0.0067 27.9 13.0 84 428-514 177-273 (504)
416 PF08311 Mad3_BUB1_I: Mad3/BUB 48.7 1.3E+02 0.0028 23.6 8.2 43 500-542 81-124 (126)
417 PF09670 Cas_Cas02710: CRISPR- 48.2 2.2E+02 0.0047 27.7 10.5 55 107-162 140-198 (379)
418 KOG4567 GTPase-activating prot 48.1 1.2E+02 0.0026 28.0 7.8 71 153-228 263-343 (370)
419 PRK11619 lytic murein transgly 47.7 3.7E+02 0.0079 28.5 37.1 48 420-470 415-462 (644)
420 PRK14956 DNA polymerase III su 47.4 3.1E+02 0.0067 27.6 12.9 108 429-560 183-291 (484)
421 KOG0376 Serine-threonine phosp 47.2 54 0.0012 32.1 6.0 49 425-475 17-66 (476)
422 cd08819 CARD_MDA5_2 Caspase ac 46.8 1.1E+02 0.0024 22.1 7.2 38 250-292 48-85 (88)
423 PRK09462 fur ferric uptake reg 46.4 1.3E+02 0.0028 24.4 7.6 31 535-565 35-66 (148)
424 PF04910 Tcf25: Transcriptiona 45.8 2.9E+02 0.0062 26.7 19.0 126 96-231 38-167 (360)
425 PRK15180 Vi polysaccharide bio 45.8 3.1E+02 0.0068 27.1 29.5 126 104-233 295-421 (831)
426 KOG0128 RNA-binding protein SA 45.7 4.1E+02 0.0089 28.5 35.9 99 95-196 110-218 (881)
427 COG5108 RPO41 Mitochondrial DN 45.6 1.6E+02 0.0035 30.3 9.0 73 417-492 33-113 (1117)
428 PF10475 DUF2450: Protein of u 44.8 2.3E+02 0.0049 26.3 9.8 112 137-259 102-218 (291)
429 PRK10564 maltose regulon perip 44.8 42 0.00091 30.7 4.7 37 414-450 259-295 (303)
430 PRK10564 maltose regulon perip 44.5 47 0.001 30.5 4.9 35 485-519 260-294 (303)
431 KOG2659 LisH motif-containing 44.4 2.2E+02 0.0048 25.0 9.0 63 306-370 24-91 (228)
432 cd00280 TRFH Telomeric Repeat 43.5 2E+02 0.0043 24.4 7.9 28 523-551 117-144 (200)
433 COG5108 RPO41 Mitochondrial DN 43.1 2.3E+02 0.005 29.3 9.6 90 103-195 33-130 (1117)
434 PF09477 Type_III_YscG: Bacter 42.9 1.5E+02 0.0032 22.5 9.5 79 218-303 21-99 (116)
435 PF09670 Cas_Cas02710: CRISPR- 42.8 3.3E+02 0.0071 26.5 11.8 56 384-440 138-197 (379)
436 PF14853 Fis1_TPR_C: Fis1 C-te 42.3 92 0.002 20.0 5.7 30 488-519 7-36 (53)
437 PRK11639 zinc uptake transcrip 40.2 1.9E+02 0.0041 24.2 7.7 60 474-534 18-77 (169)
438 smart00777 Mad3_BUB1_I Mad3/BU 39.8 1.8E+02 0.004 22.8 7.3 42 500-541 81-123 (125)
439 KOG4567 GTPase-activating prot 39.4 3.2E+02 0.0069 25.4 9.6 72 223-299 263-344 (370)
440 KOG0292 Vesicle coat complex C 39.1 3.4E+02 0.0073 29.4 10.3 131 142-302 652-782 (1202)
441 COG4976 Predicted methyltransf 38.4 66 0.0014 28.2 4.6 54 457-511 5-58 (287)
442 PF09986 DUF2225: Uncharacteri 38.3 2.7E+02 0.006 24.3 11.3 64 449-512 120-195 (214)
443 PRK06645 DNA polymerase III su 38.0 4.5E+02 0.0098 26.8 13.2 85 428-515 189-290 (507)
444 PRK14136 recX recombination re 37.8 3.4E+02 0.0073 25.2 10.9 19 429-447 194-212 (309)
445 cd07153 Fur_like Ferric uptake 37.7 88 0.0019 23.9 5.1 45 489-533 7-51 (116)
446 PF04190 DUF410: Protein of un 37.5 3.2E+02 0.0069 24.8 17.4 82 307-406 89-170 (260)
447 PF13762 MNE1: Mitochondrial s 37.4 2.2E+02 0.0048 23.0 12.5 82 450-532 42-130 (145)
448 PF10255 Paf67: RNA polymerase 37.2 4.1E+02 0.0089 26.0 10.7 58 451-508 126-190 (404)
449 PF06957 COPI_C: Coatomer (COP 36.9 1.1E+02 0.0023 30.0 6.4 32 520-551 303-334 (422)
450 PRK09857 putative transposase; 36.3 2.4E+02 0.0052 26.2 8.4 27 488-514 246-272 (292)
451 PF01475 FUR: Ferric uptake re 36.3 72 0.0016 24.7 4.4 44 523-566 13-57 (120)
452 KOG0376 Serine-threonine phosp 36.1 1.2E+02 0.0026 29.8 6.5 100 455-558 12-113 (476)
453 PF11817 Foie-gras_1: Foie gra 35.8 1.6E+02 0.0035 26.5 7.1 22 452-473 183-204 (247)
454 PRK09111 DNA polymerase III su 35.6 5.4E+02 0.012 26.9 12.8 85 428-516 193-292 (598)
455 PF11817 Foie-gras_1: Foie gra 35.3 2.2E+02 0.0047 25.6 7.9 55 278-332 183-242 (247)
456 KOG1308 Hsp70-interacting prot 35.1 46 0.001 31.0 3.5 19 495-513 195-213 (377)
457 KOG2422 Uncharacterized conser 34.7 5.2E+02 0.011 26.5 19.8 49 75-123 250-309 (665)
458 KOG2034 Vacuolar sorting prote 34.6 6.3E+02 0.014 27.4 26.5 289 246-558 366-709 (911)
459 PF10366 Vps39_1: Vacuolar sor 34.3 2.1E+02 0.0045 21.8 7.6 27 310-336 41-67 (108)
460 PF10475 DUF2450: Protein of u 34.1 3.9E+02 0.0084 24.8 11.7 51 210-266 105-155 (291)
461 COG0735 Fur Fe2+/Zn2+ uptake r 34.0 2.5E+02 0.0054 22.7 7.2 27 453-479 26-52 (145)
462 PLN03025 replication factor C 34.0 4.1E+02 0.0088 25.0 13.0 87 429-518 161-260 (319)
463 KOG0687 26S proteasome regulat 33.8 4.1E+02 0.0088 25.0 14.5 180 217-420 36-224 (393)
464 PHA02798 ankyrin-like protein; 33.0 5.3E+02 0.011 26.1 11.2 118 118-237 51-175 (489)
465 PF02184 HAT: HAT (Half-A-TPR) 33.0 95 0.0021 17.5 3.4 22 498-521 3-24 (32)
466 PRK14958 DNA polymerase III su 32.8 5.5E+02 0.012 26.2 13.4 86 429-517 181-280 (509)
467 PF09454 Vps23_core: Vps23 cor 32.7 75 0.0016 21.4 3.3 46 446-492 7-52 (65)
468 PF09477 Type_III_YscG: Bacter 31.9 2.3E+02 0.005 21.5 8.6 16 180-195 81-96 (116)
469 PRK09857 putative transposase; 31.9 4.2E+02 0.0092 24.6 9.6 66 485-551 209-274 (292)
470 PF09868 DUF2095: Uncharacteri 31.8 1.8E+02 0.004 22.1 5.4 26 487-512 66-91 (128)
471 KOG2582 COP9 signalosome, subu 30.8 4.8E+02 0.011 24.9 15.1 249 131-407 73-346 (422)
472 PF15297 CKAP2_C: Cytoskeleton 29.9 4.9E+02 0.011 24.7 9.9 63 464-528 120-186 (353)
473 PF00244 14-3-3: 14-3-3 protei 29.8 4.1E+02 0.0088 23.7 9.9 162 349-510 7-197 (236)
474 KOG4642 Chaperone-dependent E3 29.7 4.1E+02 0.0089 23.8 10.9 81 110-194 22-104 (284)
475 PF10366 Vps39_1: Vacuolar sor 28.9 2.6E+02 0.0056 21.2 7.7 26 136-161 42-67 (108)
476 PF09454 Vps23_core: Vps23 cor 28.8 1E+02 0.0022 20.8 3.5 50 479-529 5-54 (65)
477 KOG2422 Uncharacterized conser 28.3 6.7E+02 0.014 25.8 17.4 91 384-474 349-446 (665)
478 PF02847 MA3: MA3 domain; Int 28.3 1.6E+02 0.0035 22.3 5.2 61 451-513 6-68 (113)
479 KOG2297 Predicted translation 27.8 5E+02 0.011 24.2 16.4 21 308-328 321-341 (412)
480 PRK06305 DNA polymerase III su 27.7 6.3E+02 0.014 25.3 12.5 85 428-515 182-280 (451)
481 PF13934 ELYS: Nuclear pore co 27.6 4.3E+02 0.0094 23.4 16.2 55 417-474 113-167 (226)
482 COG2137 OraA Uncharacterized p 26.8 3.9E+02 0.0084 22.5 11.0 73 432-508 55-127 (174)
483 PRK14953 DNA polymerase III su 26.6 6.9E+02 0.015 25.4 11.7 86 428-516 180-279 (486)
484 PF11838 ERAP1_C: ERAP1-like C 26.6 5.3E+02 0.012 24.1 21.6 81 254-337 146-230 (324)
485 KOG4642 Chaperone-dependent E3 25.9 4.8E+02 0.011 23.3 10.6 82 318-403 20-104 (284)
486 PRK14960 DNA polymerase III su 25.7 8.3E+02 0.018 26.0 13.1 85 428-515 179-277 (702)
487 PF08461 HTH_12: Ribonuclease 25.6 1.8E+02 0.0039 19.7 4.3 41 491-531 6-46 (66)
488 COG4259 Uncharacterized protei 25.6 2.9E+02 0.0062 20.6 6.8 32 487-520 77-108 (121)
489 PRK09462 fur ferric uptake reg 25.3 2.9E+02 0.0063 22.3 6.4 35 323-357 32-66 (148)
490 PRK13342 recombination factor 25.3 6.7E+02 0.014 24.7 19.3 23 461-483 244-266 (413)
491 PF08311 Mad3_BUB1_I: Mad3/BUB 25.2 3.4E+02 0.0073 21.3 9.4 43 430-472 81-124 (126)
492 COG4003 Uncharacterized protei 25.1 2.5E+02 0.0055 19.8 5.0 26 487-512 36-61 (98)
493 PF02847 MA3: MA3 domain; Int 25.1 3E+02 0.0066 20.7 6.2 23 102-124 6-28 (113)
494 PF11768 DUF3312: Protein of u 25.1 7.5E+02 0.016 25.3 11.9 23 277-299 412-434 (545)
495 PRK11639 zinc uptake transcrip 24.4 4.2E+02 0.0091 22.1 7.4 62 438-500 17-78 (169)
496 KOG1464 COP9 signalosome, subu 23.8 5.6E+02 0.012 23.3 26.0 175 162-336 20-219 (440)
497 PRK14961 DNA polymerase III su 23.8 6.6E+02 0.014 24.2 12.5 86 427-515 179-278 (363)
498 KOG0686 COP9 signalosome, subu 23.8 6.9E+02 0.015 24.4 14.5 62 135-196 152-215 (466)
499 KOG0545 Aryl-hydrocarbon recep 23.7 5.4E+02 0.012 23.1 11.4 68 490-558 238-305 (329)
500 cd08780 Death_TRADD Death Doma 23.6 2E+02 0.0043 20.8 4.2 52 516-568 31-82 (90)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.3e-70 Score=564.27 Aligned_cols=488 Identities=17% Similarity=0.315 Sum_probs=448.8
Q ss_pred chhhccCChHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGH-KPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 149 (568)
..+.+.|++++|+++|++|.+.|+ .++...++.++..|.+.|.+++|+.+|+.|.. ||..+|+.++.+|++.|++
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCH
Confidence 345678999999999999999885 56778888899999999999999999998874 8999999999999999999
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041458 150 GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDI 229 (568)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 229 (568)
+.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M 533 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh--CCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcC
Q 041458 230 IAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPS--KGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPT 307 (568)
Q Consensus 230 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 307 (568)
...|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|++|.+.++.|+
T Consensus 534 ~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~ 613 (1060)
T PLN03218 534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999976 67899999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHH
Q 041458 308 IVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAM 386 (568)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~ 386 (568)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+. +..
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~a 693 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 889
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 041458 387 LCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEA 466 (568)
Q Consensus 387 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 466 (568)
|++.|++++|.++|++|...+..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|
T Consensus 694 y~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A 773 (1060)
T PLN03218 694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHc----c-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041458 467 LEIFVVMEEYDYKPDVDNFNALLLGLCK----S-------------------RRTDLSLEVFQMMIEKGQMPNETTYTIL 523 (568)
Q Consensus 467 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~a~~~~~~m~~~g~~p~~~~~~~l 523 (568)
.++|+.|.+.|+.||..+|++++..|.+ + +..++|..+|++|.+.|+.||..||..+
T Consensus 774 ~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~v 853 (1060)
T PLN03218 774 LDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQV 853 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 9999999999999999999999876432 1 2246799999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCC-CHHHHHHHHHhhh
Q 041458 524 VEGIAHQDELELSAEVLKELQLRQVV-SESAVERLVMQYD 562 (568)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~ 562 (568)
+.++.+.+..+.+..+++.|...+.. +..++..++..++
T Consensus 854 L~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~ 893 (1060)
T PLN03218 854 LGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG 893 (1060)
T ss_pred HHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhc
Confidence 98777888888888888887766555 5667777777664
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.9e-69 Score=560.58 Aligned_cols=477 Identities=16% Similarity=0.267 Sum_probs=455.6
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
..+.+.|.+++|+.+|+.|.. ||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 414 ~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd 489 (1060)
T PLN03218 414 KACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHH
Confidence 346788999999999999853 8999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDII 230 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 230 (568)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 490 ~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred H--cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCH
Q 041458 231 A--KGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTI 308 (568)
Q Consensus 231 ~--~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 308 (568)
. .|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~ 649 (1060)
T PLN03218 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649 (1060)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Confidence 7 57899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHH
Q 041458 309 VTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAML 387 (568)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~ 387 (568)
.+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...++.|+..+|+. +..|
T Consensus 650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy 729 (1060)
T PLN03218 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8899
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----c---
Q 041458 388 CGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM----E--- 460 (568)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~--- 460 (568)
++.|++++|.++|++|...+..||..+|+.++.+|++.|++++|.++|.+|.+.|+.||..+|+.++..|.+ +
T Consensus 730 ~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l 809 (1060)
T PLN03218 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACAL 809 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999976542 1
Q ss_pred ----------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041458 461 ----------------GLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILV 524 (568)
Q Consensus 461 ----------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 524 (568)
+..++|..+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|++++
T Consensus 810 ~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li 889 (1060)
T PLN03218 810 GEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLV 889 (1060)
T ss_pred hhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHH
Confidence 2246899999999999999999999999999999999999999999999888899999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCHHH
Q 041458 525 EGIAHQDELELSAEVLKELQLRQVVSESA 553 (568)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 553 (568)
+++.+. .++|..++++|.+.|..|.-.
T Consensus 890 ~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 890 DGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 998443 468999999999999986543
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.9e-67 Score=553.10 Aligned_cols=476 Identities=15% Similarity=0.215 Sum_probs=444.6
Q ss_pred CchhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 041458 70 NDTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 70 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 149 (568)
++.|++.|++++|..+|++|. .||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 467888999999999999983 5788899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041458 150 GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDI 229 (568)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 229 (568)
+.|.+++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999985 568899999999999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHh
Q 041458 230 IAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIV 309 (568)
Q Consensus 230 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 309 (568)
.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~v 456 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVI 456 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999874 5788
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHH
Q 041458 310 TYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLC 388 (568)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~ 388 (568)
+|+.++.+|++.|+.++|.++|++|.. +++||..+|+.++.+|++.|+.+.+.+++..+.+.|..++..+++. +.+|+
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 999999999999999999999999986 5889999999999999999999999999999999999999999988 88999
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 041458 389 GVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALE 468 (568)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 468 (568)
++|++++|..+|+.+ .+|..+||.+|.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+
T Consensus 536 k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 536 RCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 999999999999987 469999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-hCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 469 IFVVME-EYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 469 ~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
+|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|. ++||..+|.+|+.+|..+|+.+.|+...+++.+..
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 999999 78999999999999999999999999999999995 79999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhhcCC
Q 041458 548 VVSESAVERLVMQYDFEGI 566 (568)
Q Consensus 548 ~~~~~~~~~l~~~~~~~g~ 566 (568)
+.+...+..+...|...|.
T Consensus 688 p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 688 PNSVGYYILLCNLYADAGK 706 (857)
T ss_pred CCCcchHHHHHHHHHHCCC
Confidence 9999999999999988875
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-66 Score=550.28 Aligned_cols=478 Identities=17% Similarity=0.202 Sum_probs=374.6
Q ss_pred CchhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 041458 70 NDTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 70 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 149 (568)
+.+|++.|++++|+.+|++|...|+.||..+|+.++.+|++.+++..+.+++..+.+.|+.||..+++.||.+|++.|++
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041458 150 GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDI 229 (568)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 229 (568)
++|.++|++|.+ ||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..+
T Consensus 239 ~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~ 314 (857)
T PLN03077 239 VSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314 (857)
T ss_pred HHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 999999999874 6888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHh
Q 041458 230 IAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIV 309 (568)
Q Consensus 230 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 309 (568)
.+.|..||..+||.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..
T Consensus 315 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~ 390 (857)
T PLN03077 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390 (857)
T ss_pred HHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce
Confidence 9999999999999999999999999999999999863 588899999999999999999999999998888899999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHH
Q 041458 310 TYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLC 388 (568)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~ 388 (568)
||+.++.+|++.|++++|.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|++|.+ +|..+|+. +..|+
T Consensus 391 t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~ 466 (857)
T PLN03077 391 TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLR 466 (857)
T ss_pred eHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHH
Confidence 99999999999999999999999998888888888889999999988888888888888753 56677777 67888
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 041458 389 GVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALE 468 (568)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 468 (568)
+.|+.++|..+|++|.. +..||..+|+.++.+|++.|+.+.+.+++..+.+.|+.+|..++++|+.+|++.|++++|.+
T Consensus 467 ~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~ 545 (857)
T PLN03077 467 LNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN 545 (857)
T ss_pred HCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHH
Confidence 88888888888888865 46777777777777777777777777766666666665555555555555555555555554
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HcC
Q 041458 469 IFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQ-LRQ 547 (568)
Q Consensus 469 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~ 547 (568)
+|+.+ .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||..++.+|.+.|++++|.++|++|. +.+
T Consensus 546 ~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 546 QFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred HHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC
Confidence 44443 234445555555555555555555555555544455555555555555555555555555555554 233
Q ss_pred CC-CHHHHHHHHHhhhhcC
Q 041458 548 VV-SESAVERLVMQYDFEG 565 (568)
Q Consensus 548 ~~-~~~~~~~l~~~~~~~g 565 (568)
.. +...+..++..|+..|
T Consensus 621 i~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 621 ITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred CCCchHHHHHHHHHHHhCC
Confidence 33 2234444444444444
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-64 Score=522.85 Aligned_cols=462 Identities=18% Similarity=0.237 Sum_probs=440.3
Q ss_pred chhhccCChHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKG-HKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 149 (568)
..+.+.|++++|+.+|++|...+ ..||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.++.+|++.|++
T Consensus 95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~ 174 (697)
T PLN03081 95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174 (697)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCH
Confidence 56788999999999999998764 68999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041458 150 GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDI 229 (568)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 229 (568)
++|.++|++|.+ ||..+||+++.+|++.|++++|+++|++|.+.|+.||..+|+.++.++++.|..+.+.+++..+
T Consensus 175 ~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~ 250 (697)
T PLN03081 175 IDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250 (697)
T ss_pred HHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999999975 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHh
Q 041458 230 IAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIV 309 (568)
Q Consensus 230 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 309 (568)
.+.|..||..+|+.|+.+|++.|++++|.++|++|.. +|..+||+++.+|++.|++++|.++|++|.+.|+.||..
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999999999999975 499999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHH
Q 041458 310 TYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLC 388 (568)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~ 388 (568)
||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|. .||..+|+. +..|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 478899999 88999
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHHH
Q 041458 389 GVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTK-YGFTPDSYTYSSLIRGLCMEGLIEEAL 467 (568)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~ 467 (568)
+.|+.++|.++|++|.+.+..||..+|+.++.+|++.|+.++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 699999999999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 468 EIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 468 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+ +.| +..+|..+++.|.+.|++++|.+++++|.+.
T Consensus 483 ~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 483 AMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 998765 5789999999999999999999999999999975 455 4679999999999999999999999999999
Q ss_pred CCC
Q 041458 547 QVV 549 (568)
Q Consensus 547 ~~~ 549 (568)
|..
T Consensus 558 g~~ 560 (697)
T PLN03081 558 GLS 560 (697)
T ss_pred CCc
Confidence 864
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-64 Score=522.70 Aligned_cols=458 Identities=15% Similarity=0.205 Sum_probs=440.5
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHH
Q 041458 94 HKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSG-IIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYN 172 (568)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (568)
...+..+|+.++..+.+.|++++|+++|++|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566789999999999999999999999999865 67999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 041458 173 SLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEG 252 (568)
Q Consensus 173 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 252 (568)
.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|++|.+.|..|+..+|+.++.+|++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999996 57999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHH
Q 041458 253 RTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLD 332 (568)
Q Consensus 253 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (568)
..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999996 4589999999999999999999999999
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhCCCCCC
Q 041458 333 EMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQNSSP 411 (568)
Q Consensus 333 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 411 (568)
+|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++. +.+|+++|++++|.++|++|.+ +|
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CC
Confidence 999999999999999999999999999999999999999999999999999 8899999999999999999975 58
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCChhhHHHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME-EYDYKPDVDNFNALLL 490 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~li~ 490 (568)
..+||.||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+++++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 899999999999999999999999999999999999999999999999999999999999998 4799999999999999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcCC
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFEGI 566 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 566 (568)
+|++.|++++|.+++++| ++.|+..+|+.|+.+|..+|+++.|.++++++.+.++.+...+..++..|+..|.
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 999999999999999876 4789999999999999999999999999999999999888899999999998885
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.1e-30 Score=279.36 Aligned_cols=482 Identities=13% Similarity=0.043 Sum_probs=297.3
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC----------------------
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGI---------------------- 129 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------------- 129 (568)
.+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.++.+.+...
T Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 450 (899)
T TIGR02917 372 AYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKA 450 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHH
Confidence 4455666666666666665543 22444555555555556666666666555554431
Q ss_pred -----------CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 041458 130 -----------IPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKG 198 (568)
Q Consensus 130 -----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 198 (568)
+.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 529 (899)
T TIGR02917 451 LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID 529 (899)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1233444445555555555555555555544431 2234444445555555555555555555554432
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHH
Q 041458 199 LVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNI 278 (568)
Q Consensus 199 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 278 (568)
+.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..+.+.|++++|..+++.+.+.. +.+...|..
T Consensus 530 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 606 (899)
T TIGR02917 530 -PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLM 606 (899)
T ss_pred -cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 2244455555555555555555555555554442 2234445555555666666666666666655432 234555666
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 041458 279 LLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGK 358 (568)
Q Consensus 279 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 358 (568)
+..+|...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+... .+..++..+...+...|+
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCC
Confidence 6666666666666666666665443 33455566666666666666666666666665432 244556666666666666
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 359 VDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEM 438 (568)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (568)
+++|.++++.+....+............+...|++++|...|+.+....+.+ ..+..++..+.+.|+.++|.+.++++
T Consensus 685 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRALLASGNTAEAVKTLEAW 762 (899)
T ss_pred HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666665543333332333556667777777777777776654433 45566677777777777777777777
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH
Q 041458 439 TKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNET 518 (568)
Q Consensus 439 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 518 (568)
.+.. +.+...+..+...|...|+.++|.++|+++.+..+ .+...++.+...+...|+ ++|+.+++++.+. .+.+..
T Consensus 763 l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~ 838 (899)
T TIGR02917 763 LKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPA 838 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcH
Confidence 7653 33566777777778888888888888888876543 367777788888888888 7788888887764 233556
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcCC
Q 041458 519 TYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFEGI 566 (568)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 566 (568)
++..+...+...|++++|.++++++++.++.++.+...++..|+..|.
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Confidence 777788888888999999999999999998888888888888888775
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.2e-30 Score=278.19 Aligned_cols=482 Identities=14% Similarity=0.063 Sum_probs=270.1
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
..+.+.|++++|...++.+.... +.+...+..+...+.+.|++++|.++|+++.+... .+...+..+...+...|+++
T Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 414 (899)
T TIGR02917 337 SIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPS 414 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChH
Confidence 45678999999999999998764 45788899999999999999999999999988653 35667777888888888888
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDII 230 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 230 (568)
+|.+.++.+.+.. +.+......++..+.+.|++++|.++++.+... .+++..++..+...+...|++++|.+.|+++.
T Consensus 415 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 415 EAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8888888877653 223344455566666666666666666666554 23355566666666666666666666666665
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhh
Q 041458 231 AKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVT 310 (568)
Q Consensus 231 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 310 (568)
+.. +.+...+..+...+...|++++|.+.|+++.+... .+..++..+...+.+.|+.++|..+++++...+ +.+...
T Consensus 493 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 569 (899)
T TIGR02917 493 SIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEP 569 (899)
T ss_pred hhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhH
Confidence 542 22344455555556666666666666666554422 244455555555555555555555555554433 233444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhC
Q 041458 311 YNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGV 390 (568)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (568)
+..++..|...|++++|.++++.+.+.. +.+...|..+...+.+.|++++|...++++.+..+............+...
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM 648 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 4455555555555555555555554432 223444555555555555555555555555443322222222223444445
Q ss_pred CCHHHHHHHHHHHhhCCCC---------------------------------CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041458 391 GKVQEAFAIIQSLGNKQNS---------------------------------SPQEFYKYVITSLCRKGKTYQAFQLLYE 437 (568)
Q Consensus 391 ~~~~~a~~~~~~~~~~~~~---------------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 437 (568)
|++++|...|+++....+. .+...+..+...+...|++++|.+.|++
T Consensus 649 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 728 (899)
T TIGR02917 649 KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRK 728 (899)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555555554443222 1333344444444455555555555554
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 041458 438 MTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE 517 (568)
Q Consensus 438 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 517 (568)
+.+. .|+..++..++.++.+.|++++|.+.++.+.+.... +...+..+...|...|+.++|.++|+++.+.. +++.
T Consensus 729 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 804 (899)
T TIGR02917 729 ALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNA 804 (899)
T ss_pred HHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCH
Confidence 4443 223334444444555555555555555554443222 44444555555555555555555555555432 3344
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcC
Q 041458 518 TTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFEG 565 (568)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 565 (568)
.++..+...+...|+ .+|..+++++.+..+.++.....+...+...|
T Consensus 805 ~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 805 VVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 445555555555555 44555555555555554444444444444333
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.3e-22 Score=221.45 Aligned_cols=481 Identities=12% Similarity=0.032 Sum_probs=321.0
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVV-QATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
.+.+.|++++|+..|+.+.+.++ |+.. ............|+.++|++.++++.+..+ .+...+..+...+...|+.+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccCCHH
Confidence 35678999999999999887643 3322 111111222345889999999999988753 25667788888888899999
Q ss_pred hHHHHHHHHHhCCC----------------C--Cc-HHHH----------------------------------HHHHHH
Q 041458 151 YAMQLVEKMEDYGY----------------P--TN-TVTY----------------------------------NSLVRG 177 (568)
Q Consensus 151 ~a~~~~~~~~~~~~----------------~--~~-~~~~----------------------------------~~li~~ 177 (568)
+|++.++++.+... + +. ...+ ......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 99999888754310 0 00 0000 011334
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHhhHH------------HH
Q 041458 178 LCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKP-NLVSYN------------VL 244 (568)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~------------~l 244 (568)
+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|++.++..... ....|. ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 566788899999998888763 2367788888888889999999999998888763321 111121 22
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHH---------
Q 041458 245 LTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILI--------- 315 (568)
Q Consensus 245 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--------- 315 (568)
...+.+.|++++|+..|+++.+... .+...+..+...+...|++++|++.|+++.+.. +.+...+..+.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHH
Confidence 3456788889999999988887633 255667778888888999999999988887653 22333333333
Q ss_pred ---------------------------------HHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 041458 316 ---------------------------------GSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLV 362 (568)
Q Consensus 316 ---------------------------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 362 (568)
..+...|++++|++.|++.++..+. +...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 3344556677777777766665322 444555666667777777777
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChh---------hHHHHHHHHHhcCChhHHHH
Q 041458 363 VKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQE---------FYKYVITSLCRKGKTYQAFQ 433 (568)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~g~~~~A~~ 433 (568)
...++++.+..+......+.....+...++.++|...++.+......++.. .+......+...|+.++|+.
T Consensus 515 ~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 515 DALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 777777666543333333333444555666777776666654322111111 12234556677788888887
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 041458 434 LLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQ 513 (568)
Q Consensus 434 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 513 (568)
+++. .+++...+..+...+.+.|++++|.+.|+...+..+. +...+..++..|...|+.++|.+.++...+. -
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~ 667 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT-A 667 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-C
Confidence 7762 2345566778888899999999999999999876544 7788889999999999999999999988764 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCH------HHHHHHHHhhhhcC
Q 041458 514 MPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSE------SAVERLVMQYDFEG 565 (568)
Q Consensus 514 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g 565 (568)
+.+..++..+..++...|++++|.+++++++...+.++ .....+...+...|
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G 725 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTG 725 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcC
Confidence 23556677778888899999999999999988766532 23334455555544
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=9e-22 Score=214.88 Aligned_cols=481 Identities=13% Similarity=0.051 Sum_probs=313.6
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhH----------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQA----------------TNLLYDLCKANKMKKAIKVMEMMVSSGIIPDAS- 134 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~- 134 (568)
.+.+.|+.++|.+.++++.+..+. +...+ ..+...+.+.|++++|++.|+.+.+.+. |+..
T Consensus 71 ~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~l 148 (1157)
T PRK11447 71 LLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDL 148 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHH
Confidence 446789999999999999887532 33322 3334567899999999999999987643 3322
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---------------
Q 041458 135 SYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL--------------- 199 (568)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--------------- 199 (568)
....+.......|+.++|++.++++.+. .|.+...+..+...+...|+.++|++.++++.+...
T Consensus 149 a~~y~~~~~~~~g~~~~A~~~L~~ll~~-~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~ 227 (1157)
T PRK11447 149 AVEYWRLVAKLPAQRPEAINQLQRLNAD-YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKD 227 (1157)
T ss_pred HHHHHHHHhhCCccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 1212222233568999999999999986 355778889999999999999999999998865321
Q ss_pred ---C--------------CCHhhH----H-----------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 041458 200 ---V--------------PNAFTY----S-----------------FLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSY 241 (568)
Q Consensus 200 ---~--------------~~~~~~----~-----------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (568)
. |+.... . .....+...|++++|...|++.++.. +.+...+
T Consensus 228 ~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~ 306 (1157)
T PRK11447 228 MPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEAL 306 (1157)
T ss_pred cCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 0 110000 0 11234566788999999999988763 3367788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCC-ChhHH------------HHHHHHHHcCCCHHHHHHHHHHhccCCCCcCH
Q 041458 242 NVLLTGLCKEGRTEEAIRFFRDLPSKGFEP-NVVSY------------NILLRSLCMEGRWEEANELLAEMDGGDRSPTI 308 (568)
Q Consensus 242 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 308 (568)
..+...+.+.|++++|+..|++..+..... +...| ......+.+.|++++|...|+++.... +.+.
T Consensus 307 ~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~ 385 (1157)
T PRK11447 307 GALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDS 385 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 888889999999999999999887653321 11112 122345678899999999999988764 4466
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH-----------------------------------
Q 041458 309 VTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARL----------------------------------- 353 (568)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----------------------------------- 353 (568)
..+..+...+...|++++|++.|+++.+.... +...+..+...+
T Consensus 386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~ 464 (1157)
T PRK11447 386 YAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRL 464 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHH
Confidence 77778888999999999999999998875422 333343333333
Q ss_pred -------HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 041458 354 -------CSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKG 426 (568)
Q Consensus 354 -------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 426 (568)
...|++++|++.+++.++..+......+.....+...|++++|...++++....+. +...+..+...+...+
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCC
Confidence 23444444444444444443222222222244444455555555555544433222 1222222222333444
Q ss_pred ChhHHHHHHHHHHHCCCCCCh---------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 041458 427 KTYQAFQLLYEMTKYGFTPDS---------YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRR 497 (568)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~p~~---------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 497 (568)
+.++|+..++.+......++. ..+..+...+...|+.++|.++++. .+.+...+..+...+.+.|+
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~ 618 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGD 618 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCC
Confidence 455555444443221111110 0112334556666777777776651 23356677788889999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcC
Q 041458 498 TDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFEG 565 (568)
Q Consensus 498 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 565 (568)
+++|++.+++.++.. +.+...+..+...+...|++++|.+.++++.+..+.+......+...+...|
T Consensus 619 ~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 619 YAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence 999999999999852 4467888889999999999999999999999888888887777777776555
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=5.4e-22 Score=184.02 Aligned_cols=440 Identities=14% Similarity=0.107 Sum_probs=350.2
Q ss_pred hhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhH
Q 041458 73 RHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYA 152 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 152 (568)
..+.|++++|.+.-...-+. .+.+....-.+-..+.+..+.+...+--....+... .-..+|..+.+.+-..|++++|
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~-d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~kerg~~~~a 135 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQE-DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILKERGQLQDA 135 (966)
T ss_pred HHhccCHHHHHHHHhHhhcc-CCCcccceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHHHhchHHHH
Confidence 35689999998765544333 233444444455666677777776665555555432 3577899999999999999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHH-HHHHHHHcCCHHHHHHHHHHHHH
Q 041458 153 MQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSF-LLEAAYKERGVHAAMKLLDDIIA 231 (568)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~ 231 (568)
+.+++.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+.....+ +-......|++++|...+.+.++
T Consensus 136 l~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 136 LALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 99999999863 346889999999999999999999999998875 555444333 33445567999999999998887
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhh
Q 041458 232 KGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPN-VVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVT 310 (568)
Q Consensus 232 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 310 (568)
... -=.+.|+.|...+-..|+...|++.|++..+. +|+ ...|-.|...|...+.+++|...+.+..... +.....
T Consensus 213 ~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a 288 (966)
T KOG4626|consen 213 TQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVA 288 (966)
T ss_pred hCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhh
Confidence 622 23567899999999999999999999998875 443 4578888889999999999999998887653 345677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhC
Q 041458 311 YNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGV 390 (568)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (568)
+..+...|..+|..+-|+..|++.++..+. -+..|+.|..++...|++.+|...+.+.+...+......++....+...
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ 367 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 888888899999999999999999886432 3467999999999999999999999999998888788888889999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 041458 391 GKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALEI 469 (568)
Q Consensus 391 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 469 (568)
|.+++|..+|....+..+. -....+.|...|-+.|++++|+..+++.++ ++|+ ...|+.+...|-..|+++.|...
T Consensus 368 ~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred ccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHH
Confidence 9999999999988876443 235678889999999999999999999886 5776 56889999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 041458 470 FVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE-TTYTILVEGIA 528 (568)
Q Consensus 470 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 528 (568)
+.+....++. -.+.++.|...|-..|++.+|++-+++.++ ++||. ..+..++.+..
T Consensus 445 y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 445 YTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 9998876433 467888999999999999999999999998 46653 55555555443
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=2e-21 Score=180.28 Aligned_cols=446 Identities=15% Similarity=0.074 Sum_probs=360.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM 180 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 180 (568)
...|..-..+.|++++|.+.-...-.++. .+......+-..+.+..+++....--....+. .+.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 45566777889999999988776666542 23344444445677777777665544444443 34457889999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHH-HHHHHHHhcCChHHHHH
Q 041458 181 LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYN-VLLTGLCKEGRTEEAIR 259 (568)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~A~~ 259 (568)
.|++++|+..++.+++.... ....|..+..++...|+.+.|...|.+.++. .|+..... .+....-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999999987432 6788999999999999999999999998876 45544433 33444556899999999
Q ss_pred HHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 041458 260 FFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF 339 (568)
Q Consensus 260 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (568)
.|.+...... --...|+.|...+-.+|+...|++.|++..+.+ +.=...|..|...|...+.+++|...|.+......
T Consensus 206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 9988876522 135678999999999999999999999998764 22356889999999999999999999998887532
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 041458 340 RPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVI 419 (568)
Q Consensus 340 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 419 (568)
. ....+..+...|...|..|.|+..+++.++..+.....--+....+-..|++.+|...+.+.....+. -....+.|.
T Consensus 284 n-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLg 361 (966)
T KOG4626|consen 284 N-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLG 361 (966)
T ss_pred c-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHH
Confidence 2 44566667778899999999999999999987666666666678888899999999999998776443 446678899
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCC
Q 041458 420 TSLCRKGKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPD-VDNFNALLLGLCKSRR 497 (568)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 497 (568)
..|...|.+++|..+|....+. .|. ...++.|...|-.+|++++|...+++..+- .|+ ...|+.+...|-..|+
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhh
Confidence 9999999999999999998874 454 567899999999999999999999998864 555 5689999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhh
Q 041458 498 TDLSLEVFQMMIEKGQMPN-ETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQY 561 (568)
Q Consensus 498 ~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 561 (568)
.+.|.+.+.+++.. .|. ....+.|...|..+|++.+|++-++..++..+..+++..+++...
T Consensus 438 v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 99999999999974 564 578889999999999999999999999999999888877776653
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.2e-18 Score=181.89 Aligned_cols=471 Identities=14% Similarity=0.039 Sum_probs=247.3
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHH
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQ 154 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 154 (568)
..|++++|+..|+..++..+. +...+..+...|.+.|+.++|+..+++..+... -|...+..+ ..+ ++.++|.+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh---ccChhHHH
Confidence 458888999999988887544 577888888888999999999999988887642 233333333 222 77788888
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHH--------HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHH-HHHHHHcCCHHHHHHH
Q 041458 155 LVEKMEDYGYPTNTVTYNSLVRG--------LCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFL-LEAAYKERGVHAAMKL 225 (568)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~ 225 (568)
+++++.+.. |-+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.+++++|+++
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 888887652 2334444444433 3333 33333333 2222222233333333 5555566666666666
Q ss_pred HHHHHHcCC------------------------------CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CChh
Q 041458 226 LDDIIAKGG------------------------------KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFE-PNVV 274 (568)
Q Consensus 226 ~~~~~~~~~------------------------------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~ 274 (568)
+.++.+.+. +.+...+..+...|.+.|+.++|.++++++...-.. |...
T Consensus 205 L~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 205 YNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 655555432 124444445555566666666666666655433111 2222
Q ss_pred HHH------------------------------HHHHHHHcC--------------------------------------
Q 041458 275 SYN------------------------------ILLRSLCME-------------------------------------- 286 (568)
Q Consensus 275 ~~~------------------------------~l~~~~~~~-------------------------------------- 286 (568)
+|- .++..+.+.
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 220 001111111
Q ss_pred -------------------------CCHHHHHHHHHHhccC--CCCcCHhhHHHHHHHHHhcCC---hHHHHHH------
Q 041458 287 -------------------------GRWEEANELLAEMDGG--DRSPTIVTYNILIGSLAYHGK---TDHALKV------ 330 (568)
Q Consensus 287 -------------------------g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~---~~~a~~~------ 330 (568)
|+.++|..+++..... +...+......++..|.+.+. ..++..+
T Consensus 365 ~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (987)
T PRK09782 365 ARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPL 444 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccccc
Confidence 2222222222222210 000111112233333333322 1111111
Q ss_pred ----------------HHHHHHC-CC-CC--CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHh
Q 041458 331 ----------------LDEMVKG-RF-RP--SAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCG 389 (568)
Q Consensus 331 ----------------~~~~~~~-~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 389 (568)
++..... +. ++ +...|..+..++.. ++.++|...+.+..... |+...... ...+..
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~ 521 (987)
T PRK09782 445 AEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQ 521 (987)
T ss_pred chhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHH
Confidence 0000000 00 11 33344445555544 66777777666666553 33222111 333456
Q ss_pred CCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHH
Q 041458 390 VGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALE 468 (568)
Q Consensus 390 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 468 (568)
.|++++|...|+++....+ +...+..+...+.+.|+.++|...+++..+.. |+ ...+..+.......|++++|..
T Consensus 522 ~Gr~eeAi~~~rka~~~~p--~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 522 VEDYATALAAWQKISLHDM--SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred CCCHHHHHHHHHHHhccCC--CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHH
Confidence 7777777777776654422 22334455566666777777777777666543 22 2222233333344577777777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 469 IFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 469 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
.+++..+. .|+...|..+..++.+.|+.++|.+.+++..+.. +.+...+..+..++...|+.++|...+++.++..|
T Consensus 598 ~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 598 DLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 77766654 3455666666667777777777777777766641 23455555666666667777777777777777777
Q ss_pred CCHHHHHHHHHhhhhcCC
Q 041458 549 VSESAVERLVMQYDFEGI 566 (568)
Q Consensus 549 ~~~~~~~~l~~~~~~~g~ 566 (568)
.+......+...+...|.
T Consensus 675 ~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDD 692 (987)
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 766666666666665553
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=6.1e-19 Score=181.05 Aligned_cols=434 Identities=13% Similarity=0.030 Sum_probs=246.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 041458 100 QATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLC 179 (568)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 179 (568)
.+......+.+.|+++.|+..|++.++. .|+...|..+..+|.+.|++++|++.++...+.. +.+..+|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3556777888999999999999998875 4677888899999999999999999999998863 446778999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 041458 180 MLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIR 259 (568)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 259 (568)
..|++++|+.-|......+...+.. ...++..+.. ..+........+.. +++...+..+.. |......+....
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 9999999998887765542221221 1112211111 12222222222221 112222222221 211111111111
Q ss_pred HHHHhhhCCCCCCh-hHHHHHHHH---HHcCCCHHHHHHHHHHhccCC-C-CcCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 041458 260 FFRDLPSKGFEPNV-VSYNILLRS---LCMEGRWEEANELLAEMDGGD-R-SPTIVTYNILIGSLAYHGKTDHALKVLDE 333 (568)
Q Consensus 260 ~~~~~~~~~~~p~~-~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (568)
-+....+. .+.. ..+..+... ....+++++|.+.|++....+ . +.....+..+...+...|++++|+..|++
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11111110 0110 011111100 122356666777776665543 1 22344556666666667777777777776
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChh
Q 041458 334 MVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQE 413 (568)
Q Consensus 334 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 413 (568)
.++.... ....|..+...+...|++++|...++++++..+......+.....+...|++++|...|++.....+. +..
T Consensus 357 al~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~ 434 (615)
T TIGR00990 357 SIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIF 434 (615)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHH
Confidence 6654321 23455556666666777777777777666654333333333355666667777777777766665433 344
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------hHHH
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVD------NFNA 487 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~~~ 487 (568)
.+..+...+.+.|++++|+..|++..+.. +.+...++.+...+...|++++|.+.|++..+.....+.. .++.
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 55566666667777777777777666542 2235566666677777777777777777666542221111 1111
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 488 LLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 488 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
....+...|++++|.+++++..+.+ +.+...+..+...+...|++++|.+++++..+....
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 1222233567777777777766542 223445666667777777777777777776665543
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=9.1e-21 Score=184.96 Aligned_cols=238 Identities=13% Similarity=0.075 Sum_probs=109.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc----ccHHHHHH
Q 041458 276 YNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSA----ASYNPIIA 351 (568)
Q Consensus 276 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~ 351 (568)
+..+...|.+.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3344444444444444444444444321 223344444444444444444444444444433211110 01222333
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 041458 352 RLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQA 431 (568)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 431 (568)
.+.+.|++++|...++++.+..+......+.....+.+.|++++|...|+++...++......++.++.+|.+.|+.++|
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 34444444444444444443321111111111223333333333333333333322221223455556666666666666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc---cCChHHHHHHHHHH
Q 041458 432 FQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK---SRRTDLSLEVFQMM 508 (568)
Q Consensus 432 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m 508 (568)
...++++.+. .|+...+..++..+.+.|++++|.++++++.+. .|+...++.++..+.. .|+.+++..++++|
T Consensus 269 ~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 269 LEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 6666666554 344444556666666666666666666666543 3555566655555443 34566666666666
Q ss_pred HHCCCCCCHH
Q 041458 509 IEKGQMPNET 518 (568)
Q Consensus 509 ~~~g~~p~~~ 518 (568)
.++++.|++.
T Consensus 345 ~~~~~~~~p~ 354 (389)
T PRK11788 345 VGEQLKRKPR 354 (389)
T ss_pred HHHHHhCCCC
Confidence 6555444443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=6.7e-19 Score=180.75 Aligned_cols=424 Identities=13% Similarity=0.015 Sum_probs=294.0
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGY 151 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 151 (568)
.+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++..++.+. .+...|..+..+|...|++++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 356779999999999999875 56778899999999999999999999999998753 256788889999999999999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041458 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIA 231 (568)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 231 (568)
|+.-|......+-..+. ....++..+.. ..+........+.. .++...+..+.. +......+....-+++..+
T Consensus 213 A~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 99988777654211122 12222222211 12223333333321 222223332222 2221111111111111111
Q ss_pred cCCCCC-HhhHHHHHHH---HHhcCChHHHHHHHHHhhhCC-CCC-ChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCC
Q 041458 232 KGGKPN-LVSYNVLLTG---LCKEGRTEEAIRFFRDLPSKG-FEP-NVVSYNILLRSLCMEGRWEEANELLAEMDGGDRS 305 (568)
Q Consensus 232 ~~~~~~-~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 305 (568)
. .++ ...+..+... ....+++++|.+.|+...+.+ ..| +...|+.+...+...|++++|...+++..... +
T Consensus 286 ~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P 362 (615)
T TIGR00990 286 L--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-P 362 (615)
T ss_pred c--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 1 111 0111111111 123478899999999988754 223 44567788888889999999999999988764 3
Q ss_pred cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 041458 306 PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLA 385 (568)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 385 (568)
.+...|..+...+...|++++|...|++.++... .+...|..+...+...|++++|+..|++.+...+...........
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~ 441 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 3466888888899999999999999999887643 356788888889999999999999999998875443334444477
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh------HHHHHHHHHh
Q 041458 386 MLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYT------YSSLIRGLCM 459 (568)
Q Consensus 386 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~------~~~l~~~~~~ 459 (568)
.+.+.|++++|...|++.....+. +...++.+...+...|++++|++.|++..+.....+... ++..+..+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 888899999999999998876443 567788899999999999999999999887532211111 1122223344
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 460 EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
.|++++|.+++++..+.... +...+..+...+.+.|++++|.+.|++..+.
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 69999999999998876543 5567889999999999999999999999874
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.2e-20 Score=184.03 Aligned_cols=295 Identities=16% Similarity=0.100 Sum_probs=153.1
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCChhh
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD---ASSYTYLVNCLCKKGNVGY 151 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~ 151 (568)
..|++++|+..|+++++.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3455666666666665542 22444555555566666666666666666555321111 1334555555666666666
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHHcCCHHHHHHHHH
Q 041458 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNA----FTYSFLLEAAYKERGVHAAMKLLD 227 (568)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~ 227 (568)
|.++|+++.+. .+.+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|.+.|+
T Consensus 126 A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 66666665543 2234555556666666666666666666665554322211 123334445555566666666666
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcC
Q 041458 228 DIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPT 307 (568)
Q Consensus 228 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 307 (568)
++.+.. +.+...+..+...+.+.|++++|.++|+++...+......+++.++.+|...|++++|...++++.+. .|+
T Consensus 205 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~ 281 (389)
T PRK11788 205 KALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPG 281 (389)
T ss_pred HHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 555442 22334455555555556666666666655554422212334455555555566666666655555543 233
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCC
Q 041458 308 IVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCS---EGKVDLVVKCLDQMFHRRCKP 376 (568)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~ 376 (568)
...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.++.|
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 334455555555556666666655555543 3455555555544443 335555555555555544333
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=4.3e-18 Score=177.89 Aligned_cols=425 Identities=13% Similarity=0.018 Sum_probs=255.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
+.....-.+......|+.++|++++....... ..+...+..+...+...|++++|.++|++..+. -|.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 44444455666677788888888888877522 234556777777888888888888888887765 2445666777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 177 GLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
.+...|++++|...+++..+.. +.+.. +..+..++...|+.++|...++++.+... .+...+..+...+...+..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHH
Confidence 8888888888888888887662 22444 77777777788888888888888877632 245555566667777777888
Q ss_pred HHHHHHHhhhCCCCCCh------hHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCCh---HHH
Q 041458 257 AIRFFRDLPSKGFEPNV------VSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKT---DHA 327 (568)
Q Consensus 257 A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a 327 (568)
|++.++.... .|+. .....++......+. ...+++ ++|
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~------------------------------~~~~r~~~ad~A 215 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR------------------------------SEKERYAIADRA 215 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc------------------------------ChhHHHHHHHHH
Confidence 8877776653 2221 011111111111100 011111 334
Q ss_pred HHHHHHHHHC-CCCCCcc-cHH----HHHHHHHhcCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHhCCCHHHHHHHH
Q 041458 328 LKVLDEMVKG-RFRPSAA-SYN----PIIARLCSEGKVDLVVKCLDQMFHRRCK-PNEGTYNGLAMLCGVGKVQEAFAII 400 (568)
Q Consensus 328 ~~~~~~~~~~-~~~~~~~-~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~ 400 (568)
++.++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.. |+.........+...|++++|...|
T Consensus 216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 4444444422 1111111 000 0012233444555555555554444321 2222222233444455555555555
Q ss_pred HHHhhCCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------CCCh---hhHHHHHHHHHhcCCH
Q 041458 401 QSLGNKQNSS---PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGF-----------TPDS---YTYSSLIRGLCMEGLI 463 (568)
Q Consensus 401 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~~---~~~~~l~~~~~~~g~~ 463 (568)
+++....+.. .......+..++...|++++|.+.++++.+... .|+. ..+..+...+...|++
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 5544332211 122344445556667777777777776665321 1231 2345667778888999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 041458 464 EEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEGIAHQDELELSAEVLKE 542 (568)
Q Consensus 464 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 542 (568)
++|++.++++....+. +...+..+...+...|++++|++.+++.... .| +...+......+...|++++|..++++
T Consensus 376 ~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 376 PQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999888866444 6778888888888999999999999988875 45 456666777788888999999999999
Q ss_pred HHHcCCCCHHHHHHHHHhhhh
Q 041458 543 LQLRQVVSESAVERLVMQYDF 563 (568)
Q Consensus 543 ~~~~~~~~~~~~~~l~~~~~~ 563 (568)
+++..+.++.+ .++-+.+..
T Consensus 453 ll~~~Pd~~~~-~~~~~~~~~ 472 (765)
T PRK10049 453 VVAREPQDPGV-QRLARARDV 472 (765)
T ss_pred HHHhCCCCHHH-HHHHHHHHh
Confidence 99988886654 444444433
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.6e-18 Score=177.26 Aligned_cols=338 Identities=13% Similarity=0.091 Sum_probs=264.9
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
..+.+.|++.+|+.+++..+...+. +...+..++......|+++.|.+.++.+.+..+ .+...+..+...+...|+++
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHH
Confidence 3456789999999999998887544 455566667777889999999999999998753 35677888889999999999
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDII 230 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 230 (568)
+|...++++.+. -|.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.
T Consensus 128 ~Ai~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 128 TVADLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 999999999875 2456778889999999999999999999988765433 33333333 34788999999999999988
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHH----HHHHHHHhccCCCCc
Q 041458 231 AKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEE----ANELLAEMDGGDRSP 306 (568)
Q Consensus 231 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~ 306 (568)
.....++...+..+...+.+.|++++|...++++...... +...+..+...+...|++++ |...+++..... +.
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~ 282 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SD 282 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CC
Confidence 7643344455556677888999999999999998876433 56778888999999999986 799999988764 45
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 041458 307 TIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAM 386 (568)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 386 (568)
+...+..+...+.+.|++++|...+++..+..+. +...+..+...+.+.|++++|...++++....+............
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a 361 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA 361 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 6788899999999999999999999999886533 455677788889999999999999999988754322222223567
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCChhhHH
Q 041458 387 LCGVGKVQEAFAIIQSLGNKQNSSPQEFYK 416 (568)
Q Consensus 387 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 416 (568)
+...|+.++|...|++..+..+......|.
T Consensus 362 l~~~G~~deA~~~l~~al~~~P~~~~~~~~ 391 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQARASHLPQSFE 391 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhChhhchhhHH
Confidence 788999999999999987765543333333
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=3.4e-18 Score=174.79 Aligned_cols=366 Identities=11% Similarity=0.016 Sum_probs=284.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM 180 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 180 (568)
...++..+.+.|++++|..+++........ +...+..++.+....|++++|.+.++++.+.. |.+...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 445677888999999999999999987544 45566666677788999999999999999863 4567889999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 041458 181 LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRF 260 (568)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 260 (568)
.|++++|...+++..+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999998863 336778888999999999999999999988776333 33334333 347889999999999
Q ss_pred HHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHH----HHHHHHHHHH
Q 041458 261 FRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDH----ALKVLDEMVK 336 (568)
Q Consensus 261 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~ 336 (568)
++.+.+....++...+..+...+...|++++|...++++.... +.+...+..+...+...|++++ |...|++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9998776433445555666788899999999999999998775 5567888899999999999986 8999999988
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHH
Q 041458 337 GRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYK 416 (568)
Q Consensus 337 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 416 (568)
..+. +...+..+...+.+.|++++|...+++.....+............+...|++++|...|+.+...++. +...+.
T Consensus 279 l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~ 356 (656)
T PRK15174 279 FNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNR 356 (656)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHH
Confidence 6533 66788889999999999999999999999876554444455577888999999999999999876544 223344
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH----HHHHHHHhcCCHHHHHHHHHHHH
Q 041458 417 YVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYS----SLIRGLCMEGLIEEALEIFVVME 474 (568)
Q Consensus 417 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~a~~~~~~m~ 474 (568)
.+..++...|+.++|...|++..+....--...|. .+-.++...+..++....+.+..
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 45678899999999999999988753221122333 33333444455544444555554
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=2.6e-17 Score=172.09 Aligned_cols=421 Identities=10% Similarity=0.010 Sum_probs=290.4
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
......|+.++|+.++.+.... .+.+...+..+...+.+.|++++|.++++...+.. +.+...+..+...+...|+++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 3456789999999999998763 24466678899999999999999999999998864 235677888888999999999
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDII 230 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 230 (568)
+|+..++++.+. .|.+.. +..+..++...|+.++|+..++++.+.... +...+..+...+...+..+.|++.++...
T Consensus 101 eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 101 EALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 999999999886 455666 888999999999999999999999987433 56666777888888999999999988765
Q ss_pred HcCCCCCH------hhHHHHHHHHHh-----cCCh---HHHHHHHHHhhhC-CCCCChhH-H----HHHHHHHHcCCCHH
Q 041458 231 AKGGKPNL------VSYNVLLTGLCK-----EGRT---EEAIRFFRDLPSK-GFEPNVVS-Y----NILLRSLCMEGRWE 290 (568)
Q Consensus 231 ~~~~~~~~------~~~~~ll~~~~~-----~g~~---~~A~~~~~~~~~~-~~~p~~~~-~----~~l~~~~~~~g~~~ 290 (568)
. .|+. .....++..... .+++ ++|++.++.+.+. ...|+... + ...+..+...|+++
T Consensus 178 ~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 178 L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 4 2221 112223333321 1233 6677777777643 22232211 1 11133445668888
Q ss_pred HHHHHHHHhccCCCC-cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CcccHHHHHHHHHhcCCHHHHHHHH
Q 041458 291 EANELLAEMDGGDRS-PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRP---SAASYNPIIARLCSEGKVDLVVKCL 366 (568)
Q Consensus 291 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~ 366 (568)
+|+..|+++.+.+.+ |+. ....+...|...|++++|+..|+++.+..... .......+..++.+.|++++|..++
T Consensus 255 eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 888888888776422 221 22225667888888888888888877643211 1123445555677788888888888
Q ss_pred HHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 041458 367 DQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSP---QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGF 443 (568)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 443 (568)
+.+....+. ....+. ... ..|+ ...+..+...+...|+.++|++.++++....
T Consensus 334 ~~~~~~~P~-~~~~~~--------------------~~~--~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~- 389 (765)
T PRK10049 334 AHTINNSPP-FLRLYG--------------------SPT--SIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA- 389 (765)
T ss_pred HHHhhcCCc-eEeecC--------------------CCC--CCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 777755321 000000 000 0112 1234556677778889999999988887753
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041458 444 TPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTIL 523 (568)
Q Consensus 444 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 523 (568)
+.+...+..+...+...|++++|++.+++..+..+. +...+..++..+...|++++|.++++++++. .|+......+
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~ 466 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRL 466 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 334667788888888899999999999988875433 4667777777888888999999999998874 5655544444
Q ss_pred HHHH
Q 041458 524 VEGI 527 (568)
Q Consensus 524 l~~~ 527 (568)
-..+
T Consensus 467 ~~~~ 470 (765)
T PRK10049 467 ARAR 470 (765)
T ss_pred HHHH
Confidence 4433
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=1e-16 Score=164.20 Aligned_cols=450 Identities=14% Similarity=0.041 Sum_probs=250.8
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHH
Q 041458 74 HRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAM 153 (568)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 153 (568)
.+.|++..|+..|++.++..+......+ .++..+...|+.++|+..+++..... .........+...+...|++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666666654322111222 55555666666666666666665210 111222222344556666666666
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 041458 154 QLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKG 233 (568)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 233 (568)
++|+++.+.. |.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 6666666552 334555556666666666666666666666554 3343334333333333444444666666666652
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHH
Q 041458 234 GKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNI 313 (568)
Q Consensus 234 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 313 (568)
+.+...+..+...+.+.|-...|.++..+-... +.+....+ | . .+.|.+..+-.. .++.. -
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~--l-~-------~~~~a~~vr~a~----~~~~~-~-- 260 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQ--L-E-------RDAAAEQVRMAV----LPTRS-E-- 260 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHH--H-H-------HHHHHHHHhhcc----ccccc-c--
Confidence 224555555666666666666666555543321 11111111 0 0 011111110000 00000 0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC-CCCCCccc-H-H---HHHHHHHhcCCHHHHHHHHHHHhhCCCC-CChhhHHHHHH
Q 041458 314 LIGSLAYHGKTDHALKVLDEMVKG-RFRPSAAS-Y-N---PIIARLCSEGKVDLVVKCLDQMFHRRCK-PNEGTYNGLAM 386 (568)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~-~-~---~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 386 (568)
- .+.--.+.|+.-++.+... +..|.... | . -.+-++...++..++++.++.+...+.. |+-........
T Consensus 261 -~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 261 -T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred -h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 0 0000123334444444331 11121111 1 1 2233555666666666666666655532 44433333566
Q ss_pred HHhCCCHHHHHHHHHHHhhCCC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------CCC--h-
Q 041458 387 LCGVGKVQEAFAIIQSLGNKQN-----SSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGF-----------TPD--S- 447 (568)
Q Consensus 387 ~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~--~- 447 (568)
|...+++++|..+++.+..... .++......|.-++...+++++|..+++++.+... .|| -
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 6666666666666666644321 12233346677788888888888888888876311 122 1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEG 526 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~ 526 (568)
..+..++..+...|++.+|++.++.+....+. |......+.+.+...|.+.+|.+.++.+... .| +..+......+
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~ 493 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHH
Confidence 12345667788899999999999999876555 8889999999999999999999999777654 44 56677778888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCHHHH
Q 041458 527 IAHQDELELSAEVLKELQLRQVVSESAV 554 (568)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 554 (568)
+...|++++|.++.+++.+..|.+..+.
T Consensus 494 al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 8889999999999999999999877554
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=2.1e-16 Score=165.37 Aligned_cols=241 Identities=11% Similarity=0.010 Sum_probs=192.9
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 041458 307 TIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAM 386 (568)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 386 (568)
+...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...++++...... +...+.....
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~a 551 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANT 551 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 67788888888877 89999999888887653 55443333444556899999999999998665322 3334444677
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 041458 387 LCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEA 466 (568)
Q Consensus 387 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 466 (568)
+.+.|+.++|...++...+..+. ....+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 88899999999999999887533 2233333444455669999999999999975 56788899999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 467 LEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 467 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
...+++..+..+. +...++.+..++...|++++|++.+++..+. .+-+...+..+..++...|++++|...+++.++.
T Consensus 629 ~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 629 VSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999987655 7788899999999999999999999999985 2447788999999999999999999999999999
Q ss_pred CCCCHHHHHH
Q 041458 547 QVVSESAVER 556 (568)
Q Consensus 547 ~~~~~~~~~~ 556 (568)
.+.+..+...
T Consensus 707 ~P~~a~i~~~ 716 (987)
T PRK09782 707 IDNQALITPL 716 (987)
T ss_pred CCCCchhhhh
Confidence 9886554433
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=4.1e-17 Score=159.91 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 041458 428 TYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQM 507 (568)
Q Consensus 428 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 507 (568)
.++|+++|.+.++.... |...-|.+.-.++..|++.+|..+|.+..+.... +..+|-.+.++|...|++..|+++|+.
T Consensus 628 ~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544221 4444455555556666666666666665544322 444555666666666666666666665
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHH
Q 041458 508 MIEK-GQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERL 557 (568)
Q Consensus 508 m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 557 (568)
..+. ....+..+...|.+++.+.|.+.+|.+.+.......+.++....++
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 5543 2233555556666666666666666666666666666655444443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=5.9e-16 Score=158.70 Aligned_cols=422 Identities=10% Similarity=0.029 Sum_probs=279.0
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
..+...|+.++|+..+++.+.. .+........+...+...|++++|+++|+++.+.... +...+..++..+...++.+
T Consensus 76 ~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~ 153 (822)
T PRK14574 76 QIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGG 153 (822)
T ss_pred HHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHH
Confidence 4556789999999999998732 2223334444466888899999999999999998643 5777888888999999999
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDII 230 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 230 (568)
+|++.++++... .|+...+..++..+...++..+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+-.
T Consensus 154 eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 154 VVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred HHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 999999999875 3555555555555555667767999999999874 3367788888999999999999988777644
Q ss_pred HcCCCCCHhhH--HHHHHHHHhc---------CC---hHHHHHHHHHhhhC-CCCCCh-hH----HHHHHHHHHcCCCHH
Q 041458 231 AKGGKPNLVSY--NVLLTGLCKE---------GR---TEEAIRFFRDLPSK-GFEPNV-VS----YNILLRSLCMEGRWE 290 (568)
Q Consensus 231 ~~~~~~~~~~~--~~ll~~~~~~---------g~---~~~A~~~~~~~~~~-~~~p~~-~~----~~~l~~~~~~~g~~~ 290 (568)
.. ..+....+ ...+.-.++. .+ .+.|+.-++.+... +..|.. .. ..-.+-++...|++.
T Consensus 231 ~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~ 309 (822)
T PRK14574 231 NL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA 309 (822)
T ss_pred cc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 32 11111111 0011111211 11 23344444444431 112221 11 123445567778888
Q ss_pred HHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCcccHHHHHHHHHhcCCHHHHHHH
Q 041458 291 EANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF-----RPSAASYNPIIARLCSEGKVDLVVKC 365 (568)
Q Consensus 291 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~ 365 (568)
++++.++.+...+.+....+-..+.++|...+++++|+.+|..+..... .++......|.-++...+++++|..+
T Consensus 310 ~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 310 DLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 8888888887766554455677778888888888888888887765421 11222245677777788888888888
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 041458 366 LDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQ-EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFT 444 (568)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 444 (568)
++.+.+..+ .-...+.. ..+.+.||- .....++..+...|+..+|++.++++.... +
T Consensus 390 l~~~~~~~p-~~~~~~~~--------------------~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P 447 (822)
T PRK14574 390 AVNYSEQTP-YQVGVYGL--------------------PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-P 447 (822)
T ss_pred HHHHHhcCC-cEEeccCC--------------------CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 877776321 00000000 000111121 223445666788899999999999887763 3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041458 445 PDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTIL 523 (568)
Q Consensus 445 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 523 (568)
-|......+.+.+...|.+.+|.+.++......+. +..+....+.++...|++++|.++.+...+. .|+......|
T Consensus 448 ~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l 523 (822)
T PRK14574 448 ANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQEL 523 (822)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHH
Confidence 36778888888899999999999999776655333 5667777888888889999999998888874 5655444333
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=4.9e-16 Score=152.49 Aligned_cols=483 Identities=12% Similarity=0.083 Sum_probs=351.2
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCK---ANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKG 147 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 147 (568)
.++.+-|+.+.|+..|.+.++.++ .++.++-.|...-.. ...+..+.+++...-..+. -|+.+.+.|.+.|.-.|
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKK 284 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcc
Confidence 456688999999999999988754 344444443333232 3455667777777665543 37888899999999999
Q ss_pred ChhhHHHHHHHHHhCCCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHHcCCHHHHH
Q 041458 148 NVGYAMQLVEKMEDYGYP--TNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAF--TYSFLLEAAYKERGVHAAM 223 (568)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~a~ 223 (568)
++..++.+...+...... .-...|-.+.++|-..|++++|...|.+..+. .+|.+ .+.-+...+.+.|+++.+.
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~ 362 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESK 362 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHH
Confidence 999999998888764211 12345778999999999999999999887765 44443 3455778899999999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcC----ChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 041458 224 KLLDDIIAKGGKPNLVSYNVLLTGLCKEG----RTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 299 (568)
..|+.+... .+.+..+...+...|...+ ..+.|..++.+..+.- ..|...|-.+...+....-+.. +..+...
T Consensus 363 ~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A 439 (1018)
T KOG2002|consen 363 FCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNA 439 (1018)
T ss_pred HHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHH
Confidence 999998877 3446667777777776664 5677777777776653 3377788777777765554443 5555443
Q ss_pred ----ccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCcc------cHHHHHHHHHhcCCHHHHHHHH
Q 041458 300 ----DGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG---RFRPSAA------SYNPIIARLCSEGKVDLVVKCL 366 (568)
Q Consensus 300 ----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~------~~~~li~~~~~~~~~~~a~~~~ 366 (568)
...+-.+.+...|.+...+...|++.+|...|...... ...++.. +-..+...+-..++.+.|.+.+
T Consensus 440 ~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 440 LDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 23344566788999999999999999999999887754 1223331 2223444555677899999999
Q ss_pred HHHhhCCCCCChhhHHH--HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-C
Q 041458 367 DQMFHRRCKPNEGTYNG--LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYG-F 443 (568)
Q Consensus 367 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~ 443 (568)
..+++.. |.-..-.. +.+.-..+...+|...+......+.. ++..+..+...+.+...+..|.+-|+...+.- .
T Consensus 520 k~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 520 KSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTST 596 (1018)
T ss_pred HHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence 9998873 44333333 33445568889999999888776443 56678888888888888888888777665432 2
Q ss_pred CCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 444 TPDSYTYSSLIRGLCM------------EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 444 ~p~~~~~~~l~~~~~~------------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
.+|..+..+|.+.|.. .+..++|+++|.+..+..+. |...-|.+.-.++..|++.+|..+|.+..+.
T Consensus 597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa 675 (1018)
T KOG2002|consen 597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREA 675 (1018)
T ss_pred CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHH
Confidence 3577777777776653 24678999999999887655 8888888888999999999999999998886
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CHHHHHHHHHhhhhcC
Q 041458 512 GQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV--SESAVERLVMQYDFEG 565 (568)
Q Consensus 512 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 565 (568)
. ..+..+|..+..+|...|++..|.++|+...+.... +..++..|.+.|...|
T Consensus 676 ~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 676 T-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred H-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 3 345678888999999999999999999998876665 7888888888877655
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1e-16 Score=143.96 Aligned_cols=458 Identities=16% Similarity=0.151 Sum_probs=323.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCChhhHHHHHHHHHhCCCCC----cHHHHHHHH
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYT-YLVNCLCKKGNVGYAMQLVEKMEDYGYPT----NTVTYNSLV 175 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li 175 (568)
...|..-|..+....+|+..|+-+.+....|+...+- .+.+.+.+...+.+|++.++.....-... .....+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 4445666777778889999999998887777766543 34567788889999999998776541111 133455666
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------CCHhhHHH
Q 041458 176 RGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGK------------PNLVSYNV 243 (568)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~ 243 (568)
-.+.+.|++++|..-|+...+. .|+..+-..|+-++..-|+.++..+.|.+|+..... |+....+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 6778999999999999999876 678777666776777789999999999999865322 23333332
Q ss_pred HHH-----HHHhcC--ChHHHHHHHHHhhhCCCCCChhH---H------------------HHHHHHHHcCCCHHHHHHH
Q 041458 244 LLT-----GLCKEG--RTEEAIRFFRDLPSKGFEPNVVS---Y------------------NILLRSLCMEGRWEEANEL 295 (568)
Q Consensus 244 ll~-----~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~---~------------------~~l~~~~~~~g~~~~a~~~ 295 (568)
.|. -.-+.+ +.++++-.-.+++.--+.|+-.. | ..-...|.+.|+++.|.++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 221 111111 12222222222222222333110 0 0112247889999999999
Q ss_pred HHHhccCCCCcCHhhHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 041458 296 LAEMDGGDRSPTIVTYNILIGSLAY--HGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRR 373 (568)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 373 (568)
+.-+.+.+-+.....-+.|-..+.- ..++..|.+.-+..+..+ +.+......-.......|++++|...+++.+...
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 9888766533333334444333333 345677777766665421 1122221112223456799999999999999876
Q ss_pred CCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 041458 374 CKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSL 453 (568)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 453 (568)
..-....|+....+-..|++++|++.|-++..--. .+....-.+...|....++..|++++.+.... ++.|+...+.|
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl 598 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKL 598 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHH
Confidence 66667777888888899999999999987654211 25566777788898999999999999887664 55678889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC
Q 041458 454 IRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI-AHQDE 532 (568)
Q Consensus 454 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~ 532 (568)
...|-+.|+-.+|.+.+-+--+. ++-+.++...|..-|....-.++++.+|++..- +.|+..-|..++..| .+.|+
T Consensus 599 ~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhccc
Confidence 99999999999999887655444 455888999999999999999999999999875 699999999988666 56899
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcCC
Q 041458 533 LELSAEVLKELQLRQVVSESAVERLVMQYDFEGI 566 (568)
Q Consensus 533 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 566 (568)
+.+|..+++...++-+.+.+.++.|++...--|+
T Consensus 676 yqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999999988766654
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=9.5e-15 Score=130.59 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCChhhHH---HHHHHHHccCChHHHHHHHHHHHHCC
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEE-YDYKPDVDNFN---ALLLGLCKSRRTDLSLEVFQMMIEKG 512 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~g 512 (568)
...+..+-.+.+.|..++|.+++..+.+ .+-.|-....| .+++.-.+.+++..|...++-|...+
T Consensus 523 t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 523 TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 3445555556677777777777776642 22223333344 34445555666666776666665543
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.80 E-value=1.2e-13 Score=130.12 Aligned_cols=465 Identities=11% Similarity=0.023 Sum_probs=238.4
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 041458 81 DAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKME 160 (568)
Q Consensus 81 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 160 (568)
.=.++++..++. ++.++..|.. .....+.+.|+.++.++.+.- +.+...|. +|++...++.|.+++++..
T Consensus 364 ~K~RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaR 433 (913)
T KOG0495|consen 364 NKKRVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKAR 433 (913)
T ss_pred HHHHHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 344566666665 3334444443 233455566777777666642 12333333 3445555666777777766
Q ss_pred hCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 041458 161 DYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLI----QKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKP 236 (568)
Q Consensus 161 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (568)
+. +|.+...|.+-...--.+|+.+...+++++-+ ..|+..+...|..=...|-..|..-.+..+....+.-|+..
T Consensus 434 e~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe 512 (913)
T KOG0495|consen 434 EI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE 512 (913)
T ss_pred hh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc
Confidence 54 56666677666666666677766666665432 34666666666666666666666666666666555555432
Q ss_pred --CHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHH
Q 041458 237 --NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNIL 314 (568)
Q Consensus 237 --~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 314 (568)
-..+|+.-...|.+.+.++-|..+|....+. ++-+...|......--..|..++...+|++.... ++.....|-..
T Consensus 513 ed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ 590 (913)
T KOG0495|consen 513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMY 590 (913)
T ss_pred chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHH
Confidence 1245555555556666666666666555543 1223344444444444445555555555555443 12233344444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCH
Q 041458 315 IGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKV 393 (568)
Q Consensus 315 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 393 (568)
...+-..|++..|..++..+.+.... +...|-.-+.....+.+++.|..+|.+....+ |....|.- +...--.+..
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhH
Confidence 44444555555555555555544322 44445555555555555555555555544432 22222222 2222333455
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041458 394 QEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALEIFVV 472 (568)
Q Consensus 394 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 472 (568)
++|.+++++..+..+. -.-.|-.+.+.+-+.++.+.|.+.|..-.+. .|+ ...|..|...--+.|.+-+|..++++
T Consensus 668 eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 5555555444443222 1223444444444444444444444433332 222 22333333333444444444444444
Q ss_pred HHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHC-----------------------------CCCCCHHHHHHH
Q 041458 473 MEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK-----------------------------GQMPNETTYTIL 523 (568)
Q Consensus 473 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----------------------------g~~p~~~~~~~l 523 (568)
..-.++. |...|...|..-.+.|..+.|..+..++++. ...-|+.....+
T Consensus 745 arlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllai 823 (913)
T KOG0495|consen 745 ARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAI 823 (913)
T ss_pred HHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHH
Confidence 4433333 4444444444444444444444444333321 022344555555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcC
Q 041458 524 VEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFEG 565 (568)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 565 (568)
...+....+++.|+++|++.++.++...++..-+.+.+..+|
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 566666677888888888888888887777777777777776
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.7e-14 Score=128.92 Aligned_cols=432 Identities=16% Similarity=0.223 Sum_probs=298.9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHhcCChhhH-HHHHHHHHhCCCCCcHHHHHHH
Q 041458 98 VVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNC--LCKKGNVGYA-MQLVEKMEDYGYPTNTVTYNSL 174 (568)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~l 174 (568)
+++=+.|+. ...+|.++++.-+|+.|...|...+..+-..|++. |-...++--| ++.|-.|...|- .+..+|.
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sWK-- 191 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSWK-- 191 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-ccccccc--
Confidence 344555554 45668888899999999988877777766666553 3333343333 345555655542 2344442
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 041458 175 VRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRT 254 (568)
Q Consensus 175 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 254 (568)
.|+..+ ++-+. .+.+..++..+|.+.|+-...+.|.+++++-.....+.+..+||.+|.+-.-.
T Consensus 192 ------~G~vAd---L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~--- 255 (625)
T KOG4422|consen 192 ------SGAVAD---LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS--- 255 (625)
T ss_pred ------cccHHH---HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh---
Confidence 343322 33222 23467889999999999999999999999998888888999999988764322
Q ss_pred HHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHH----HHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHH-HHH
Q 041458 255 EEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEE----ANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDH-ALK 329 (568)
Q Consensus 255 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~ 329 (568)
...++..+|.+..+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..
T Consensus 256 -~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 256 -VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred -ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 227888899988899999999999999999998765 46778888999999999999999998888877754 444
Q ss_pred HHHHHHH----CCCCC----CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCCC--hhhHHH--HHHHHhCCCH
Q 041458 330 VLDEMVK----GRFRP----SAASYNPIIARLCSEGKVDLVVKCLDQMFHRR----CKPN--EGTYNG--LAMLCGVGKV 393 (568)
Q Consensus 330 ~~~~~~~----~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~--~~~~~~--~~~~~~~~~~ 393 (568)
++.++.. +.++| |..-|...+..|.+..+.+.|.++..-+.... +.|+ ...|+. ....|+....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 33333 33345566777888888888888776654321 1121 122322 6677888889
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-C--------HH
Q 041458 394 QEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEG-L--------IE 464 (568)
Q Consensus 394 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~--------~~ 464 (568)
+.-...|+.|...-..|...+...++++..-.|.++-.-++|..++..|..-+...-.-++..+++.. . +.
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~ 494 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQ 494 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 99999999998888888888888888988889999988888888887775544444444444444433 1 00
Q ss_pred -----HHHHHH-------HHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHH
Q 041458 465 -----EALEIF-------VVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQ----MPNETTYTILVEGIA 528 (568)
Q Consensus 465 -----~a~~~~-------~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~~~~~ll~~~~ 528 (568)
-|..++ .+|.+. .......++..-.+.+.|+.++|.+++....+.+- .|.-....-+++.-.
T Consensus 495 ~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~ 572 (625)
T KOG4422|consen 495 VAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK 572 (625)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH
Confidence 011111 223333 33456778888889999999999999999866532 233344556777778
Q ss_pred hcCChhHHHHHHHHHHHcCCCCHH
Q 041458 529 HQDELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~~~~~~ 552 (568)
.......|..+++-+...+...-+
T Consensus 573 ~~~spsqA~~~lQ~a~~~n~~~~E 596 (625)
T KOG4422|consen 573 VSNSPSQAIEVLQLASAFNLPICE 596 (625)
T ss_pred hcCCHHHHHHHHHHHHHcCchhhh
Confidence 888999999999999877766333
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.80 E-value=1.4e-13 Score=129.53 Aligned_cols=451 Identities=14% Similarity=0.072 Sum_probs=247.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 041458 78 KLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVE 157 (568)
Q Consensus 78 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 157 (568)
+.++|.-++.+..+- ++.+.. |.-+|++..-++.|..+++...+. ++-+...|.+-...--..|+.+...++.+
T Consensus 391 ~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 391 EPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred ChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 344466666666553 222222 233445555566666666666553 33355566555555555666665555554
Q ss_pred HH----HhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---------------------------------
Q 041458 158 KM----EDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLV--------------------------------- 200 (568)
Q Consensus 158 ~~----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--------------------------------- 200 (568)
+- ...|+..+...|-.=...|-..|..-.+..+....+..|+.
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 32 23455555555554444444445444444444444444332
Q ss_pred ---CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHH
Q 041458 201 ---PNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYN 277 (568)
Q Consensus 201 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 277 (568)
-+...|......--..|..+.-..+|++.... .+-....|-.....+-..|+...|..++....+.... +...|-
T Consensus 545 vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwl 622 (913)
T KOG0495|consen 545 VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWL 622 (913)
T ss_pred hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHH
Confidence 23333444443334445555555555555444 2223344444444455555555555555555544222 444555
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhc
Q 041458 278 ILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPS-AASYNPIIARLCSE 356 (568)
Q Consensus 278 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 356 (568)
.-+.......+++.|..+|.+.... .|+...|..-+..---.++.++|++++++.++. -|+ ...|..+.+.+-+.
T Consensus 623 aavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHH
Confidence 5555555555666666666555442 345555555555445555566666666555543 122 22334444455555
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041458 357 GKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLL 435 (568)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 435 (568)
++.+.|...|..-.+.-+. ....|.+ ...--+.|.+-.|..++++...+++. +...|-..|..-.+.|+.+.|..+.
T Consensus 699 ~~ie~aR~aY~~G~k~cP~-~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKKCPN-SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHhccccCCC-CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555444433211 1122222 22333445666666666666655554 5556666666666666666666666
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 041458 436 YEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP 515 (568)
Q Consensus 436 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 515 (568)
.+..+. ++-+...|..-|....+.++-.+..+.+++. +-|......+...+....++++|.+.|++.++.+ +.
T Consensus 777 akALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d 849 (913)
T KOG0495|consen 777 AKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PD 849 (913)
T ss_pred HHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Cc
Confidence 665554 2334445555555555555544443333322 2366777778888888899999999999999863 33
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 516 NETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
.-.+|..+..-+.++|.-+.-.+++.+.....|.
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 5588888899999999988889999988887776
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.3e-13 Score=124.91 Aligned_cols=443 Identities=11% Similarity=0.060 Sum_probs=326.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
+...|.....--..++++..|..+|+.++.-.. .+...|...+.+-.++..+..|..+|++.... +|.-...|.-.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 445555555555677888899999999887653 36667888888888889999999999988875 3444456777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 177 GLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
+--..|+...|.++|++-.+. .|+...|.+.|+.-.+.+.++.|..++++.+-. .|++.+|--....--+.|....
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 777789999999999988764 889999999999999999999999999988765 6888888888888888999999
Q ss_pred HHHHHHHhhhC-C-CCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcC--HhhHHHHHHHHHhcCChHHHHH---
Q 041458 257 AIRFFRDLPSK-G-FEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPT--IVTYNILIGSLAYHGKTDHALK--- 329 (568)
Q Consensus 257 A~~~~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~--- 329 (568)
|..+|....+. | -..+...+++....-.++..++.|.-+|+-....= +.+ ...|..+...=-+.|+......
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99998887653 1 01123445555555566778888888888776542 222 3444444444444555443332
Q ss_pred -----HHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH------HH----HHHhCCCHH
Q 041458 330 -----VLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG------LA----MLCGVGKVQ 394 (568)
Q Consensus 330 -----~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~ 394 (568)
-++.+++.+ +.|-.+|-..+..-...|+.+...+++++++..-++.....+-- +. .-....+++
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 244455544 34777788888888888999999999999987644332221111 11 112467889
Q ss_pred HHHHHHHHHhhCCCCCChhh----HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 041458 395 EAFAIIQSLGNKQNSSPQEF----YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIF 470 (568)
Q Consensus 395 ~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 470 (568)
.+.++|+...+. ++-...+ |........++.++..|.+++...+ |..|...+|...|..-.+.+.++.+.+++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999887763 2223333 3344444557889999999998877 56888889999999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 471 VVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQ-MPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 471 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
++..+.++. |..+|......-...|+.+.|..+|+-++.... ......|...|+-=...|.++.|+.+++++++....
T Consensus 461 Ekfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 461 EKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 999998776 888898888888889999999999999987532 234577888888888899999999999999887765
Q ss_pred CH
Q 041458 550 SE 551 (568)
Q Consensus 550 ~~ 551 (568)
..
T Consensus 540 ~k 541 (677)
T KOG1915|consen 540 VK 541 (677)
T ss_pred ch
Confidence 44
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=5.3e-13 Score=121.08 Aligned_cols=456 Identities=10% Similarity=0.072 Sum_probs=343.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCChhhHHH
Q 041458 76 DHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDA-SSYTYLVNCLCKKGNVGYAMQ 154 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~ 154 (568)
.+++..|..+|++.+... ..+...|...+..-.+++.+..|..+++.+... .|-+ ..|-..+.+--..|++..|.+
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 577889999999998875 558888999999999999999999999999875 3333 356666666777899999999
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-C
Q 041458 155 LVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAK-G 233 (568)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~ 233 (568)
+|++-.+ ..|+..+|++.|+.-.+.+.++.|..++++.+- +.|++.+|-.....-.++|+...+..+|+...+. |
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 9999887 579999999999999999999999999999876 4799999999999999999999999999988775 1
Q ss_pred C-CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC--hhHHHHHHHHHHcCCCHHHHHHH--------HHHhccC
Q 041458 234 G-KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPN--VVSYNILLRSLCMEGRWEEANEL--------LAEMDGG 302 (568)
Q Consensus 234 ~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~--------~~~~~~~ 302 (568)
. ..+...+.+....-.++..++.|.-+|+-..+. ++.+ ...|..+...--+-|+....... ++.+.+.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 1 123344555555556778899999999887765 2212 34454444444445654443332 3334444
Q ss_pred CCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc--ccHHHHHHH--------HHhcCCHHHHHHHHHHHhhC
Q 041458 303 DRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSA--ASYNPIIAR--------LCSEGKVDLVVKCLDQMFHR 372 (568)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~--------~~~~~~~~~a~~~~~~~~~~ 372 (568)
+ +.|..+|-..+..-...|+.+...++|++.+.. ++|-. ..|...|-. -....+.+.+.+++...++.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3 668888988898888899999999999999875 33311 223333321 13467889999999988873
Q ss_pred CCCCChhhHHH-----HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 041458 373 RCKPNEGTYNG-----LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDS 447 (568)
Q Consensus 373 ~~~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 447 (568)
++....++.- .....++.++..|.+++-..... .|..-++...|..-.+.++++....++++.++.++. |.
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c 471 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NC 471 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hh
Confidence 3445555554 22334678899999999877654 456677888899889999999999999999987543 77
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEY-DYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEG 526 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 526 (568)
.+|......-...|+.+.|..+|+...+. ........|-+.|+.-...|.++.|..+++++++. .+...+|.....-
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~f 549 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKF 549 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHH
Confidence 88988888888899999999999998853 23334567888888888999999999999999985 4455577666543
Q ss_pred HH-----hcC-----------ChhHHHHHHHHHHHcC
Q 041458 527 IA-----HQD-----------ELELSAEVLKELQLRQ 547 (568)
Q Consensus 527 ~~-----~~g-----------~~~~a~~~~~~~~~~~ 547 (568)
-. +.| +...|+++|+++....
T Consensus 550 e~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 550 EASASEGQEDEDLAELEITDENIKRARKIFERANTYL 586 (677)
T ss_pred hccccccccccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence 22 233 4667888888875443
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=2e-13 Score=133.52 Aligned_cols=467 Identities=14% Similarity=0.082 Sum_probs=329.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHH
Q 041458 76 DHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQL 155 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 155 (568)
.|++++|..++.+.++.. +.+...|..|...|-..|+.+++...+-.+-..+. .|...|-.+.....+.|+++.|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHHHH
Confidence 499999999999999984 45788999999999999999999988776665543 3778899999999999999999999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041458 156 VEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAF----TYSFLLEAAYKERGVHAAMKLLDDIIA 231 (568)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~ 231 (568)
|.+..+.. |++....---+..|-+.|+...|.+-|.++.+...+.|.. .--.+++.+...++.+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999874 4566666667888999999999999999998874322222 222345667778888999999988877
Q ss_pred cC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC---------------------------CCCChhHHHHHHHHH
Q 041458 232 KG-GKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKG---------------------------FEPNVVSYNILLRSL 283 (568)
Q Consensus 232 ~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---------------------------~~p~~~~~~~l~~~~ 283 (568)
.+ ...+...++.++..+.+...++.|......+.... ..++...+ -+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhh
Confidence 32 23456678899999999999999999888876621 12222221 223334
Q ss_pred HcCCCHHHHHHHHHHhccCC--CCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHH
Q 041458 284 CMEGRWEEANELLAEMDGGD--RSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDL 361 (568)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 361 (568)
.+.+..+....+........ +.-+...|..+..+|...|++.+|+.+|..+......-+...|-.+..+|...|..+.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 44444444444444454444 3446678889999999999999999999999987555567889999999999999999
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCC--------CCCChhhHHHHHHHHHhcCChhHHHH
Q 041458 362 VVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQ--------NSSPQEFYKYVITSLCRKGKTYQAFQ 433 (568)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~ 433 (568)
|.+.++.++...+............+-+.|+.++|.+.+..+...+ ..|+....-.....+.+.|+.++=+.
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999998866555555556778889999999999999866332 22233334445566777888877555
Q ss_pred HHHHHHHCC-----C-----------------CCChhhHHHHHHHHHhcCCHHHHHHHHH------HHHhCCCCCCh--h
Q 041458 434 LLYEMTKYG-----F-----------------TPDSYTYSSLIRGLCMEGLIEEALEIFV------VMEEYDYKPDV--D 483 (568)
Q Consensus 434 ~~~~~~~~~-----~-----------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~------~m~~~~~~p~~--~ 483 (568)
+...|.... + .-...+...++.+-.+.++.....+... .-...|+..+. .
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 555443311 1 1111222233333333333221111111 11112222221 3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEKGQ--MPNE---TTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
.+..++..+++.+++++|..+...+..... .++. ..-...+.++...+++..|..+++.++..
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 456678899999999999999999887432 2222 22345567778899999999999999877
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=2.1e-14 Score=129.34 Aligned_cols=458 Identities=14% Similarity=0.106 Sum_probs=310.9
Q ss_pred hhccCChHHHHHHHHHHHhCCCCCCHHhHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcC
Q 041458 73 RHRDHKLNDAFLQLERMVSKGHKPDVVQAT-NLLYDLCKANKMKKAIKVMEMMVSSGIIPDA----SSYTYLVNCLCKKG 147 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 147 (568)
|.-+....+|+..++-+++...-||.-... .+...+.+.+.+.+|+++|+....+-+..+. ...+.+...+.+.|
T Consensus 211 y~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~g 290 (840)
T KOG2003|consen 211 YEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAG 290 (840)
T ss_pred hhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecc
Confidence 334456678888888877766666654432 3556778889999999999988876322222 23444445678899
Q ss_pred ChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC------------CHhhHHHHH-----
Q 041458 148 NVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVP------------NAFTYSFLL----- 210 (568)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~------------~~~~~~~li----- 210 (568)
.++.|+..|+...+. .||..+-..|+-++..-|+.++..+.|.+|+.....| +....+-.|
T Consensus 291 qy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~l 368 (840)
T KOG2003|consen 291 QYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHL 368 (840)
T ss_pred cchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHH
Confidence 999999999998875 4787766667777777899999999999998653222 322222222
Q ss_pred HHHHHcCC--HHHHHHHHHHHHHcCCCCCHhh-------------HH--------HHHHHHHhcCChHHHHHHHHHhhhC
Q 041458 211 EAAYKERG--VHAAMKLLDDIIAKGGKPNLVS-------------YN--------VLLTGLCKEGRTEEAIRFFRDLPSK 267 (568)
Q Consensus 211 ~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~-------------~~--------~ll~~~~~~g~~~~A~~~~~~~~~~ 267 (568)
.-+-+.+. .+++.-.--+++.--+.|+-.. +. .-..-+.++|+++.|.++++-..++
T Consensus 369 k~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~k 448 (840)
T KOG2003|consen 369 KNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKK 448 (840)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc
Confidence 11212111 1222211122222112222100 00 1123467899999999999888776
Q ss_pred CCCCChhHHHHHHHHHHc--CCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCccc
Q 041458 268 GFEPNVVSYNILLRSLCM--EGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAAS 345 (568)
Q Consensus 268 ~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 345 (568)
.-+.-...-+.|-..+.- -.++.+|.+.-+.....+ .-+......-.+.....|++++|.+.|++.+.. |..+
T Consensus 449 dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n----dasc 523 (840)
T KOG2003|consen 449 DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN----DASC 523 (840)
T ss_pred cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC----chHH
Confidence 333223333333333222 346778888777766443 334444433444556779999999999999875 3333
Q ss_pred HHHHH---HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041458 346 YNPII---ARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSL 422 (568)
Q Consensus 346 ~~~li---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 422 (568)
-.++. -.+-..|+.++|+..|-++...-.....+.+.....|....+...|++++-+.... ++.|+.....+...|
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dly 602 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLY 602 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHh
Confidence 33332 24667899999999998876543334445555577888889999999999877655 445788899999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HccCChHHH
Q 041458 423 CRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL-CKSRRTDLS 501 (568)
Q Consensus 423 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~a 501 (568)
-+.|+-..|.+.+-+--+. ++-+..+..-|..-|....-.++++.+|++..- +.|+..-|..|+..| .+.|++..|
T Consensus 603 dqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred hcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHH
Confidence 9999999999988765554 455777888888888999999999999998764 579999999888655 568999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 502 LEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 502 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
.++++....+ ++-|...+..|++.|...|.. ++.++.+++
T Consensus 680 ~d~yk~~hrk-fpedldclkflvri~~dlgl~-d~key~~kl 719 (840)
T KOG2003|consen 680 FDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK-DAKEYADKL 719 (840)
T ss_pred HHHHHHHHHh-CccchHHHHHHHHHhccccch-hHHHHHHHH
Confidence 9999998876 677999999999999888753 344454444
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=3.6e-12 Score=124.97 Aligned_cols=391 Identities=15% Similarity=0.097 Sum_probs=222.2
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH
Q 041458 141 NCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVH 220 (568)
Q Consensus 141 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 220 (568)
+.....|++++|.+++.++.+. .|.+...|.+|...|-..|+.+++...+-..-... +-|...|..+.....+.|.++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 3333447888888888777765 35567778888888888888877777665554443 336677777777777778888
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChh----HHHHHHHHHHcCCCHHHHHHHH
Q 041458 221 AAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVV----SYNILLRSLCMEGRWEEANELL 296 (568)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~ 296 (568)
+|.-.|.+.++.. +++...+---...|-+.|+...|..-|.++.......|.. ..-.++..+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888887777762 3344444455667777788877777777776653211211 1223344555666667777777
Q ss_pred HHhccC-CCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh--hCC
Q 041458 297 AEMDGG-DRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMF--HRR 373 (568)
Q Consensus 297 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~ 373 (568)
+..... +-..+...++.++..+.+...++.|.............+|..-|..-= .... -+.-.. ...
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~----~~~~------~~~~~~~~~~~ 373 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE----RRRE------EPNALCEVGKE 373 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh----hccc------cccccccCCCC
Confidence 666542 113345566677777777777777776666655422222222210000 0000 000000 001
Q ss_pred CCCChhhHHHHHHHHhCC--CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH
Q 041458 374 CKPNEGTYNGLAMLCGVG--KVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYS 451 (568)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 451 (568)
..++.........+.+.. ...+++.-|.......+..+...|.-+..+|...|++.+|+.+|..+......-+...|-
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 111222212222233333 333333333322222234445566677777777777777777777776653333455677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH--------HCCCCCCHHHHHHH
Q 041458 452 SLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMI--------EKGQMPNETTYTIL 523 (568)
Q Consensus 452 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------~~g~~p~~~~~~~l 523 (568)
.+..+|...|.+++|.+.|+......+. +...-..|...+.+.|+.++|.+.++.+. ..+..|+.......
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 7777777777777777777777654333 44455566666777777777777777643 12334455555555
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 041458 524 VEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~ 545 (568)
...+...|+.++=......|+.
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 5666667776664444444443
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=8.8e-13 Score=127.38 Aligned_cols=282 Identities=13% Similarity=0.072 Sum_probs=152.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH--HHHHHHHhcCChhhH
Q 041458 76 DHKLNDAFLQLERMVSKGHKPDVVQATNL-LYDLCKANKMKKAIKVMEMMVSSGIIPDASSYT--YLVNCLCKKGNVGYA 152 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a 152 (568)
+|+++.|.+.+....+... +...+..+ .....+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 4666666665555433211 12222222 23335666666666666666654 23332221 224456666666666
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHHcCCHHHHHHH
Q 041458 153 MQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNA-------FTYSFLLEAAYKERGVHAAMKL 225 (568)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~ 225 (568)
.+.++++.+.. |.++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66666666553 345566666666666666666666666666665433211 1222223333333444445555
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCC
Q 041458 226 LDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRS 305 (568)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 305 (568)
++.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+.+.+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 5544332 2335555566666666666666666666666553 223211 12333334466666666666665543 3
Q ss_pred cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 041458 306 PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMF 370 (568)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 370 (568)
-|...+..+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555666666666666666666666666654 3555566666666666666666666666554
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=1.2e-12 Score=127.19 Aligned_cols=293 Identities=10% Similarity=-0.010 Sum_probs=159.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHH
Q 041458 215 KERGVHAAMKLLDDIIAKGGKPN-LVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEAN 293 (568)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 293 (568)
..|+++.|.+.+.+..+. .|+ ...+-....++.+.|+.+.|.+.+.+..+....+.....-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 355555555555554443 222 12222333444555555555555555543321111112222344455555555555
Q ss_pred HHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH-HHHHHhcCCHHHHHHHHHHHhhC
Q 041458 294 ELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPI-IARLCSEGKVDLVVKCLDQMFHR 372 (568)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~ 372 (568)
..++.+.+.. +-+..++..+...+.+.|++++|.+.+..+.+.+.. +...+..+ ..++
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~------------------- 232 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE------------------- 232 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-------------------
Confidence 5555555543 334445555555555555555555555555554322 11111100 0000
Q ss_pred CCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh
Q 041458 373 RCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNS---SPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYT 449 (568)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 449 (568)
......+..+++.+.+..+....+. .+...+..+...+...|+.++|.+++++..+. .||...
T Consensus 233 ------------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~ 298 (409)
T TIGR00540 233 ------------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRA 298 (409)
T ss_pred ------------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCccc
Confidence 0001111111122233333222221 25667777888888888888888888888875 344332
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041458 450 ---YSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDV--DNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILV 524 (568)
Q Consensus 450 ---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 524 (568)
...........++.+.+.+.++...+..+. |. ....++...+.+.|++++|.+.|+........|+...+..+.
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 111222223457778888888877765332 44 566688888888999999999998533323478888888888
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 041458 525 EGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~ 545 (568)
..+.+.|+.++|.+++++...
T Consensus 378 ~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 888999999999888887643
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=2.6e-12 Score=124.10 Aligned_cols=291 Identities=11% Similarity=0.021 Sum_probs=172.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHH--HHHHHHHcCCCHHHHH
Q 041458 216 ERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYN--ILLRSLCMEGRWEEAN 293 (568)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~ 293 (568)
.|+++.|++.+....+....| ...|........+.|+++.|.+.+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666665555544331111 112222233335566666666666665543 23322221 2244555566666666
Q ss_pred HHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH-HHHHhcCCHHHHHHHHHHHhhC
Q 041458 294 ELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPII-ARLCSEGKVDLVVKCLDQMFHR 372 (568)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~ 372 (568)
..++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..+ ......+- .++.
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~------------------ 233 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLEQQAWI------------------ 233 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH------------------
Confidence 6666665543 3345555555666666666666666666665543321 11111000 0000
Q ss_pred CCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 041458 373 RCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSS 452 (568)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 452 (568)
..+.......+.+...+.++.+.... +.+......+...+...|+.++|.+++++..+. .|+... .
T Consensus 234 ---------~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~ 299 (398)
T PRK10747 234 ---------GLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--V 299 (398)
T ss_pred ---------HHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--H
Confidence 00111111223334444444443322 235667778888888999999999999888774 444422 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041458 453 LIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDE 532 (568)
Q Consensus 453 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 532 (568)
++.+....++.+++.+..+...+..+. |...+.++...+.+.|++++|.+.|+.+.+. .|+..++..+..++.+.|+
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHK 376 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCC
Confidence 344444568899999999888876544 6777888899999999999999999999874 7888888888999999999
Q ss_pred hhHHHHHHHHHHHc
Q 041458 533 LELSAEVLKELQLR 546 (568)
Q Consensus 533 ~~~a~~~~~~~~~~ 546 (568)
.++|.+++++....
T Consensus 377 ~~~A~~~~~~~l~~ 390 (398)
T PRK10747 377 PEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999988877653
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=2e-12 Score=125.72 Aligned_cols=290 Identities=11% Similarity=0.014 Sum_probs=149.0
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHH
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQ 154 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 154 (568)
..|+++.|.+.+....+..+. ....+-.......+.|+++.|.+.++.+.+....+...........+...|+++.|.+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 356666666666665554221 1222233345555666777777776666554211111223334555666666777776
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHH-HHHHHH---HHcCCHHHHHHHHHHHH
Q 041458 155 LVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYS-FLLEAA---YKERGVHAAMKLLDDII 230 (568)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~---~~~~~~~~a~~~~~~~~ 230 (568)
.++.+.+.. |.+..++..+...+.+.|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+.+.+.+..+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 666666653 345556666666666777777777766666665433 222221 111111 11122222222333333
Q ss_pred HcCC---CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhH---HHHHHHHHHcCCCHHHHHHHHHHhccCCC
Q 041458 231 AKGG---KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVS---YNILLRSLCMEGRWEEANELLAEMDGGDR 304 (568)
Q Consensus 231 ~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 304 (568)
.... +.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 2211 1255566666666666666666666666666542 22221 1111112233455566666666655442
Q ss_pred CcCH--hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 041458 305 SPTI--VTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMF 370 (568)
Q Consensus 305 ~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 370 (568)
+-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2233 44455666666666666666666643332234555556666666666666666666666543
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=2.3e-15 Score=138.94 Aligned_cols=261 Identities=17% Similarity=0.156 Sum_probs=81.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 041458 103 NLLYDLCKANKMKKAIKVMEMMVSSG-IIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCML 181 (568)
Q Consensus 103 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 181 (568)
.+...+.+.|++++|+++++...... ...|...|..+.......++.+.|++.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34555666667777777664433322 1224444555555555666666777766666654322 44455555555 566
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCChHHHHHH
Q 041458 182 GNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKG-GKPNLVSYNVLLTGLCKEGRTEEAIRF 260 (568)
Q Consensus 182 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~ 260 (568)
+++++|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666655443 2345555666666666667776666666655432 234555666666666667777777777
Q ss_pred HHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 041458 261 FRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFR 340 (568)
Q Consensus 261 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (568)
+++..+..+. |....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.+|++..+...
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p- 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP- 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-
Confidence 7666655222 35556666666666666666666666655443 34455566666666666777777777766665432
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 041458 341 PSAASYNPIIARLCSEGKVDLVVKCLDQMF 370 (568)
Q Consensus 341 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 370 (568)
.|+.....+..++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 255555666666666677766666665543
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.4e-11 Score=108.72 Aligned_cols=378 Identities=11% Similarity=0.040 Sum_probs=221.7
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhH--HH
Q 041458 166 TNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSY--NV 243 (568)
Q Consensus 166 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ 243 (568)
.|...+-.....+-+.|....|...|...... -+..|.+.+....-..+.+.+..+.. |.+.|.... --
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHH
Confidence 34444444444455666777777777666543 23334433333222223222222111 111111111 12
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCC--CcCHhhHHHHHHHHHhc
Q 041458 244 LLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDR--SPTIVTYNILIGSLAYH 321 (568)
Q Consensus 244 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 321 (568)
+..++-...+.+++.+-.......|+.-+...-+....+.....++++|+.+|+++.+.+. -.|..+|+.++-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 2344445556677777777766666665555555555666677777777777777776531 12556666655332221
Q ss_pred CChH-HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHH
Q 041458 322 GKTD-HALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAII 400 (568)
Q Consensus 322 g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 400 (568)
.+.. -|..++. + .. --+.|...+.+-|.-.++.++|...|++.++.++.-.........-|....+...|...+
T Consensus 313 skLs~LA~~v~~-i--dK--yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-I--DK--YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHHHHH-h--cc--CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1111 1111111 1 11 233455566666777777777777777777665433333322355666677777777777
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041458 401 QSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKP 480 (568)
Q Consensus 401 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 480 (568)
+...+-++. |-..|-.+.++|.-.+.+.-|+-.|++..+.. +.|+..|.+|...|.+.++.++|.+.|......|-.
T Consensus 388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 777766544 66778888888888888888888888887752 336778888888888888888888888888765533
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHH
Q 041458 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEK----GQMPN--ETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAV 554 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 554 (568)
+...+..+...|-+.++.++|.+.+++.++. |...+ .....-|..-+.+.+++++|..+.......+. .-+--
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~-e~eea 543 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET-ECEEA 543 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc-hHHHH
Confidence 5577888888888888888888888776652 32222 22222355566778888888877777766532 33333
Q ss_pred HHHHHhh
Q 041458 555 ERLVMQY 561 (568)
Q Consensus 555 ~~l~~~~ 561 (568)
++|++..
T Consensus 544 k~LlRei 550 (559)
T KOG1155|consen 544 KALLREI 550 (559)
T ss_pred HHHHHHH
Confidence 4454443
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=5.2e-15 Score=136.60 Aligned_cols=259 Identities=17% Similarity=0.134 Sum_probs=115.2
Q ss_pred chhhccCChHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKG-HKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 149 (568)
..+.+.|++++|+++++...... .+.|...|..+.......++++.|++.++.+...+.. +...+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 34567899999999997655543 3445666666667777899999999999999987643 56677777777 789999
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 041458 150 GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKG-LVPNAFTYSFLLEAAYKERGVHAAMKLLDD 228 (568)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 228 (568)
++|.+++....+. .++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|.+.+++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999877654 2577778889999999999999999999987643 346778888999999999999999999999
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCH
Q 041458 229 IIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTI 308 (568)
Q Consensus 229 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 308 (568)
.++.. +.|....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|..++++..+.. +.|.
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 99883 3367788899999999999999999988877653 4466788899999999999999999999988764 5688
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 309 VTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
.....+..++.+.|+.++|.++..++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 8899999999999999999999887654
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.3e-11 Score=112.73 Aligned_cols=424 Identities=15% Similarity=0.070 Sum_probs=243.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCc-HHHHHHHHHHH
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD-ASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTN-TVTYNSLVRGL 178 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 178 (568)
+.....-|.++|++++|++.|.+.++. .|| +.-|.....+|...|++++..+--.+..+. .|+ +.++..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 445667788999999999999999986 467 777888889999999999999988888774 344 44666677778
Q ss_pred HhcCChHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-cC--CCCCHhhHHHHHHHHHhcCCh
Q 041458 179 CMLGNLNQSLQFLDRLIQ-KGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIA-KG--GKPNLVSYNVLLTGLCKEGRT 254 (568)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~ll~~~~~~g~~ 254 (568)
-..|++++|+.=..-..- .|+. |..+--.+=+.+-+ .|.+-.++-.. .+ +-|+.....+....+... +
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--~ 265 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--P 265 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--c
Confidence 888888877643222211 1111 11111111111111 11111222112 11 223333333333322110 0
Q ss_pred HHHHHHHHHhhhCCCCCChhHHHHHHHHHHcC-CCHHHHHHHHHHhccC---CCCc---C------HhhHHHHHHHHHhc
Q 041458 255 EEAIRFFRDLPSKGFEPNVVSYNILLRSLCME-GRWEEANELLAEMDGG---DRSP---T------IVTYNILIGSLAYH 321 (568)
Q Consensus 255 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~---~~~~---~------~~~~~~l~~~~~~~ 321 (568)
...+...+.+.|...-..+=..+... ..+..|...+.+-... .... | ..+.......+.-.
T Consensus 266 ------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 266 ------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred ------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 00000000001111111111111110 1222333322221100 0000 1 11222222334456
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHH
Q 041458 322 GKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQ 401 (568)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 401 (568)
|+.-.|.+-|+..++....++ ..|-.+..+|....+.++..+.|++....++....+-+.-..+..-.+++++|..-|+
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 777788888888777654322 2255666678888888888888888887776655555555666777778888888888
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--
Q 041458 402 SLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK-- 479 (568)
Q Consensus 402 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-- 479 (568)
+.....+. +...|..+..+..+.++++++...|++.++. ++.-+..|+.....+...+++++|.+.|+...+....
T Consensus 419 Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~ 496 (606)
T KOG0547|consen 419 KAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREH 496 (606)
T ss_pred HHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc
Confidence 87776443 4455666666666778888888888888775 4445677888888888888888888888877654221
Q ss_pred ---CChhhH--HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 480 ---PDVDNF--NALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 480 ---p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
.+...+ -.++-. --.+++..|.+++++..+.+ +-....+..|...-.+.|+.++|+++|++....-
T Consensus 497 ~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred cccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 111111 112211 12377888888888888742 2255677788888888888888888888765543
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=6.5e-11 Score=107.62 Aligned_cols=364 Identities=10% Similarity=0.022 Sum_probs=253.2
Q ss_pred CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-Hhh-H
Q 041458 129 IIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPN-AFT-Y 206 (568)
Q Consensus 129 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~-~ 206 (568)
...|...+-.....+.+.|..+.|+..|...... .|..=.+|..|.... .+.+ +....... ...| ... -
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e----~~~~l~~~-l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIE----ILSILVVG-LPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHH----HHHHHHhc-CcccchHHHH
Confidence 3345444444445566788888899988887754 333444444444332 2222 22222222 1212 111 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC--CCChhHHHHHHHHHH
Q 041458 207 SFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGF--EPNVVSYNILLRSLC 284 (568)
Q Consensus 207 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~ 284 (568)
-.+..++-...+.+++..-.+.....|.+-+...-+....+.....++++|+.+|+++.+..+ --|..+|..++-.--
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 123456666678888888888888888876666666666667788899999999999988722 125667776654332
Q ss_pred cCCCHH-HHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 041458 285 MEGRWE-EANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVV 363 (568)
Q Consensus 285 ~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 363 (568)
...++. -|..++ .+. +.-+.|...+.+-|+-.++.++|...|++.++.+.. ....|+.+.+-|....+...|+
T Consensus 311 ~~skLs~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 311 DKSKLSYLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhHHHHHHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 222211 122222 121 223567778888899999999999999999987644 5677888889999999999999
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 041458 364 KCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGF 443 (568)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 443 (568)
.-++.+++-.+..-...|....+|.-.+...-|+-.|++...-.+. |...|.+|..+|.+.++.++|++.|......|-
T Consensus 385 ~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 385 ESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 9999999887666666677788999999999999999998876554 889999999999999999999999999998763
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHH
Q 041458 444 TPDSYTYSSLIRGLCMEGLIEEALEIFVVMEE----YDYKPD--VDNFNALLLGLCKSRRTDLSLEVFQMMI 509 (568)
Q Consensus 444 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 509 (568)
.+...+..|...|-+.++.++|..+|++..+ .|...+ .....-|..-+.+.+++++|........
T Consensus 464 -te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 -TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred -cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 3668899999999999999999999987764 233312 1222224556677778877776655544
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=7.9e-13 Score=125.49 Aligned_cols=281 Identities=16% Similarity=0.113 Sum_probs=150.9
Q ss_pred hhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 041458 149 VGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL--VPNAFTYSFLLEAAYKERGVHAAMKLL 226 (568)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~ 226 (568)
..+|...|.++.+. +..+..+...+.++|...+++++|.++|+.+.+... .-+..+|.+.+..+-+. -++..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45566666664443 222334555566666666677777777766655421 12455565555433221 112222
Q ss_pred -HHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCC
Q 041458 227 -DDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEP-NVVSYNILLRSLCMEGRWEEANELLAEMDGGDR 304 (568)
Q Consensus 227 -~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 304 (568)
+.+.+. .+-.+.+|.++..+|.-+++.+.|++.|++..+. .| ...+|+.+..-+....++|.|+..|+......
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 122221 2335566666666666666666666666666654 23 45566666566666666666666666665432
Q ss_pred CcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 041458 305 SPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGL 384 (568)
Q Consensus 305 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 384 (568)
+.+...|.-+...|.+.++++.|+-.|++..+-++. +.+....+...+-+.|+.|+|+.+++++....+......|..+
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 223344445556666666666666666666655433 4444444555566666666666666666665555444445445
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 385 AMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTK 440 (568)
Q Consensus 385 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 440 (568)
..+...++.++|+..++++++.-+. +...+-.+...|.+.|+.+.|+.-|.-+.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 5555555555555555555543222 223344444455555555555555544444
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.7e-10 Score=106.36 Aligned_cols=283 Identities=13% Similarity=0.006 Sum_probs=217.9
Q ss_pred CChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 041458 271 PNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPII 350 (568)
Q Consensus 271 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 350 (568)
-+......-.+-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++++.- +..+.+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 345555566666778899999999999988775 6677777777778889999888888878888764 34778899988
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 041458 351 ARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQ 430 (568)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 430 (568)
--|.-.|+..+|++.|.+.......-...+......+.-.|..+.|...+....+.-+.. ...+-.+..-|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-HLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-cchHHHHHHHHHHhccHHH
Confidence 888888999999999999887766666666666778888899999998888766543221 1124445566888899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--CChhhHHHHHHHHHccCChHHHHHH
Q 041458 431 AFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEY----DYK--PDVDNFNALLLGLCKSRRTDLSLEV 504 (568)
Q Consensus 431 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~--p~~~~~~~li~~~~~~g~~~~a~~~ 504 (568)
|.++|.+..... +.|+...+-+.-.....+.+.+|..+|+..... +.+ --..+++.|..+|.+.+++++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999887642 335677777777778889999999999877621 111 1344688889999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHH
Q 041458 505 FQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLV 558 (568)
Q Consensus 505 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 558 (568)
+++.+.. .+-|..++..+.-.|...|+++.|...+.+.+...+.+.-+...|-
T Consensus 478 ~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 478 YQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 9999886 3558889999988899999999999999999998888755444443
No 48
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=4.8e-11 Score=104.68 Aligned_cols=449 Identities=15% Similarity=0.151 Sum_probs=263.3
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
.-+....++..|+.+++.-...+-.-...+-.-+...+.+.|++++|..++..+.+.. .++...+-.|..++.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3445677888999988876544322221222335566679999999999999888754 567778888888888889999
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDII 230 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 230 (568)
+|..+-.+..+ ++-.-..|+..-.+.++-++-..+.+.+... ..--.++.+.....-.+.+|++++.+.+
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888665543 5555666777777888888877777766532 2333445555555556889999999988
Q ss_pred HcCCCCCHhhHHHHHH-HHHhcCChHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCH
Q 041458 231 AKGGKPNLVSYNVLLT-GLCKEGRTEEAIRFFRDLPSKGFEPN-VVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTI 308 (568)
Q Consensus 231 ~~~~~~~~~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 308 (568)
.. .|+....|..+. +|.+..-++-+.++++-..+. -|| ....|..+....+.=.-..|+.-..++...+-. .
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~- 252 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E- 252 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c-
Confidence 76 445556665544 557788888888888776655 233 344444444333332222333333333322210 0
Q ss_pred hhHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 041458 309 VTYNILIGSLAYH-----GKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG 383 (568)
Q Consensus 309 ~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (568)
| ..+.-.++. .+-+.|++++-.+.+. -| ..-..++--|.+.+++++|..+.+++... .|-......
T Consensus 253 --~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKg 323 (557)
T KOG3785|consen 253 --Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKG 323 (557)
T ss_pred --c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHH
Confidence 1 111122222 3345666666555542 11 12223444567777777777776655311 222222222
Q ss_pred HHHHHh-------CCCHHHHHHHHHHHhhCCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 041458 384 LAMLCG-------VGKVQEAFAIIQSLGNKQNSSPQEF-YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIR 455 (568)
Q Consensus 384 ~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 455 (568)
+ .... .....-|.+.|+-..+.+...|... -.++...+.-..++++.+-.++.+... +..|......+..
T Consensus 324 v-v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQ 401 (557)
T KOG3785|consen 324 V-VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQ 401 (557)
T ss_pred H-HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHH
Confidence 1 1111 2234556666666555544444322 334455555566777777777766654 2333333345677
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCh
Q 041458 456 GLCMEGLIEEALEIFVVMEEYDYKPDVDNFN-ALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE-TTYTILVEGIAHQDEL 533 (568)
Q Consensus 456 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~ 533 (568)
+++..|.+.+|.++|-.+....++ |..+|. .|.++|.+.++++.|++++-++- -+.+. ..+..+..-|.+.+.+
T Consensus 402 Ak~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHH
Confidence 777788888888888777655555 444554 45567777888877776654432 22232 3333445667777777
Q ss_pred hHHHHHHHHHHHcCCCCH
Q 041458 534 ELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 534 ~~a~~~~~~~~~~~~~~~ 551 (568)
=-|.+.|..+...+|.|.
T Consensus 478 yyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 478 YYAAKAFDELEILDPTPE 495 (557)
T ss_pred HHHHHhhhHHHccCCCcc
Confidence 777777777777776643
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1e-12 Score=124.80 Aligned_cols=289 Identities=11% Similarity=0.017 Sum_probs=187.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCChHHHHHH
Q 041458 113 KMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYG--YPTNTVTYNSLVRGLCMLGNLNQSLQF 190 (568)
Q Consensus 113 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~ 190 (568)
+..+|+..|+.....- .-...+...+..+|...+++++|.++|+.+.+.. .--+...|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 5567788887755542 2233555666778888888888888888877642 11245556555543321 112222
Q ss_pred -HHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 041458 191 -LDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGF 269 (568)
Q Consensus 191 -~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 269 (568)
-+.+.+. -+..+.+|.++...|.-+++.+.|++.|++.++.. +-...+|+.+..-+.....+|.|...|+.......
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2222222 13366788888888888888888888888877652 11566777777777777888888888877765411
Q ss_pred CCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH
Q 041458 270 EPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPI 349 (568)
Q Consensus 270 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 349 (568)
+ +-..|..+...|.+.++++.|+-.|++..+.+ +.+.+....+...+.+.|+.++|++++++....+.+ |+..--..
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 1 22334445666788888888888888877665 456666677777777888888888888887766544 55555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC
Q 041458 350 IARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSP 411 (568)
Q Consensus 350 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 411 (568)
+..+...+++++|+..++++.+.-+....+.+.....|-+.|+.+.|+.-|--+....++..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 66677778888888888888776433333334446677777888888887777766655443
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.55 E-value=3.7e-11 Score=117.50 Aligned_cols=443 Identities=15% Similarity=0.104 Sum_probs=229.8
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 041458 85 QLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGY 164 (568)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 164 (568)
++-.+...|+.|+.++|..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3455677899999999999999999999999998 9998887776667777888888877777777665
Q ss_pred CCcHHHHHHHHHHHHhcCChHH---HHHHHHHHHH----CCCC-----------------CCHhhHHHHHHHHHHcCCHH
Q 041458 165 PTNTVTYNSLVRGLCMLGNLNQ---SLQFLDRLIQ----KGLV-----------------PNAFTYSFLLEAAYKERGVH 220 (568)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~----~~~~-----------------~~~~~~~~li~~~~~~~~~~ 220 (568)
.|...+|..|..+|...||... ..+.+..... .|+. ||..+ .+....-.|-++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwa 156 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWA 156 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHH
Confidence 4677788888888888887543 2222222211 1211 12111 111111122222
Q ss_pred HHHHHHHHH------------------------------HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 041458 221 AAMKLLDDI------------------------------IAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFE 270 (568)
Q Consensus 221 ~a~~~~~~~------------------------------~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 270 (568)
.+.+++..+ ......|++.+|..++..-.-+|+.+.|..++.+|++.|++
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 222222111 11111356666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHH-----------HHHHHHH---
Q 041458 271 PNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALK-----------VLDEMVK--- 336 (568)
Q Consensus 271 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-----------~~~~~~~--- 336 (568)
.+..-|-.|+-+ .++..-++.+++-|...|+.|+..|+...+..+...|....+.+ ++..+..
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 665555555443 55555666666666666666666666555544444332211100 0000000
Q ss_pred ----------------------CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CC-ChhhHHH-HHHHHh-
Q 041458 337 ----------------------GRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRC--KP-NEGTYNG-LAMLCG- 389 (568)
Q Consensus 337 ----------------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~-~~~~~~~-~~~~~~- 389 (568)
.|+.....+|...+ -...+|.-+...++-..+..-.. .+ ++..+.. +..|.+
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 01111111111111 11123333444444333322110 01 0011100 111110
Q ss_pred ---------------------CCCHHHHHHHHHHHhhC----------------CCCC-------ChhhHHHHHHHHHhc
Q 041458 390 ---------------------VGKVQEAFAIIQSLGNK----------------QNSS-------PQEFYKYVITSLCRK 425 (568)
Q Consensus 390 ---------------------~~~~~~a~~~~~~~~~~----------------~~~~-------~~~~~~~li~~~~~~ 425 (568)
.....+..+........ ...+ -...-+.++-.++..
T Consensus 393 ~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se 472 (1088)
T KOG4318|consen 393 IERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSE 472 (1088)
T ss_pred HHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHH
Confidence 00000000111000000 0000 000122333344444
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCChhhHHHHHHHHHccCChHHHHH
Q 041458 426 GKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEE--YDYKPDVDNFNALLLGLCKSRRTDLSLE 503 (568)
Q Consensus 426 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~~~li~~~~~~g~~~~a~~ 503 (568)
-+..+++..-+.....-+ ...|..||.-+......+.|..+.++... ..+..|..-+..+.+.+.+.+....+.+
T Consensus 473 ~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 473 YNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 444444433333222111 13567788888888888888888887753 3344566677888888888888888888
Q ss_pred HHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 504 VFQMMIEKGQ-MP-NETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 504 ~~~~m~~~g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
+++++.+.-. .| ...++.-++......|+.+...++.+-+...|..
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~ 597 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLS 597 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh
Confidence 8888876311 22 2455666677777788888777777766665544
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=7.3e-11 Score=105.65 Aligned_cols=288 Identities=15% Similarity=0.116 Sum_probs=225.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHH
Q 041458 76 DHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQL 155 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 155 (568)
+|+|..|.++..+..+.+..| ...|..-..+--+.|+.+.+-.++.++.+....++...+-.........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 699999999998877765443 3445556667778899999999999998874455666777778888899999999999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHHcCCHHHHHHHHHH
Q 041458 156 VEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNA-------FTYSFLLEAAYKERGVHAAMKLLDD 228 (568)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~ 228 (568)
.+++.+.+ +.++........+|.+.|++.....++..+.+.|.-.|. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99888764 457888999999999999999999999999998866554 3566777766666666666667766
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCH
Q 041458 229 IIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTI 308 (568)
Q Consensus 229 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 308 (568)
.... .+.++..-..++.-+.++|+.++|.++..+..+++..|+. ...-.+.+-++...-++..++..+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 6554 4446666677888889999999999999998888766652 22234566777777777777766553 4456
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 041458 309 VTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRR 373 (568)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 373 (568)
..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+..++.+.|+...|.++.++....-
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 78889999999999999999999977765 6899999999999999999999999888776443
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=3.5e-11 Score=104.34 Aligned_cols=289 Identities=13% Similarity=0.127 Sum_probs=207.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCChhhH
Q 041458 76 DHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD---ASSYTYLVNCLCKKGNVGYA 152 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a 152 (568)
+.+.+.|..+|-+|++.. +.+..+.-+|.+.|.+.|..++|+.+++.+.++.-.+. ..+.-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 566788999999998853 34566677788999999999999999999887521111 12344566678889999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHHcCCHHHHHHHHHH
Q 041458 153 MQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAF----TYSFLLEAAYKERGVHAAMKLLDD 228 (568)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~ 228 (568)
.++|..+.+.|. .-..+...|+..|-...+|++|+++-+++.+.+..+..+ .|.-+...+....+++.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999887542 245567889999999999999999999988875544332 344555556667888999999998
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCH
Q 041458 229 IIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTI 308 (568)
Q Consensus 229 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 308 (568)
..+...+ .+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+..+.+.. +..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 8877322 3444445667888899999999999999888555556677888899999999999999998887653 334
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc---CCHHHHHHHHHHHhh
Q 041458 309 VTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSE---GKVDLVVKCLDQMFH 371 (568)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~ 371 (568)
..-..+...-....-.+.|...+.+-+.. +|+...+..++..-... |...+-...+..|..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 44445555445555566666665555444 58888888888765432 334455555555554
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=6e-11 Score=108.56 Aligned_cols=415 Identities=12% Similarity=0.033 Sum_probs=255.9
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCC
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPD-VVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD-ASSYTYLVNCLCKKGN 148 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 148 (568)
+.+.++|++++|++.+.+.+.. .|+ +..|......|...|+++...+--....+.+ |+ +.++.--..++-..|+
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhcc
Confidence 3467899999999999999885 566 7888899999999999999998888887753 43 3355555567777788
Q ss_pred hhhHHHHHHHHH-hCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH-C--CCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 041458 149 VGYAMQLVEKME-DYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQ-K--GLVPNAFTYSFLLEAAYKERGVHAAMK 224 (568)
Q Consensus 149 ~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~--~~~~~~~~~~~li~~~~~~~~~~~a~~ 224 (568)
+++|+.=..-.. -.|+. |..+- .++.-..+ ..|..-..+-.. . .+.|......+....+...-..
T Consensus 199 ~~eal~D~tv~ci~~~F~-n~s~~-~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~----- 267 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQ-NASIE-PMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP----- 267 (606)
T ss_pred HHHHHHhhhHHHHhhhcc-cchhH-HHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc-----
Confidence 777754222111 11111 11111 11111110 112222222222 1 1334544444444333211000
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHh-cCChHHHHHHHHHhhhC---CC---CCC------hhHHHHHHHHHHcCCCHHH
Q 041458 225 LLDDIIAKGGKPNLVSYNVLLTGLCK-EGRTEEAIRFFRDLPSK---GF---EPN------VVSYNILLRSLCMEGRWEE 291 (568)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~---~~---~p~------~~~~~~l~~~~~~~g~~~~ 291 (568)
.+...+.+.|...-..+=..+.. ...+..|.+.+.+-... .. ..| ..+...-...+.-.|+.-.
T Consensus 268 ---~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~ 344 (606)
T KOG0547|consen 268 ---LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLG 344 (606)
T ss_pred ---cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchh
Confidence 00000000011000000000100 01223333332221110 00 001 1111212222445688889
Q ss_pred HHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 041458 292 ANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFH 371 (568)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 371 (568)
|.+-|+..++.... +...|..+..+|....+.++..+.|.+..+.+.. ++.+|..-.+.+.-.+++++|..-|++.+.
T Consensus 345 a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred hhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998887533 3334888888999999999999999999887654 777788778888888999999999999887
Q ss_pred CCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----
Q 041458 372 RRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD----- 446 (568)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----- 446 (568)
..+..-...........+.++++++...|++...+.+. .+..|+.....+...++++.|.+.|+..++. .|+
T Consensus 423 L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~ 499 (606)
T KOG0547|consen 423 LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLII 499 (606)
T ss_pred cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--cccccccc
Confidence 64322222222244566788999999999999988665 5677999999999999999999999998874 333
Q ss_pred --hhhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 447 --SYTY--SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 447 --~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
..++ -+++..- -.+++..|.+++.+..+.+++ ....|..|...-.+.|+.++|+++|++...
T Consensus 500 v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 1122111 238999999999999987655 566899999999999999999999998765
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=8.5e-11 Score=101.98 Aligned_cols=263 Identities=14% Similarity=0.121 Sum_probs=128.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCC---hhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHH
Q 041458 243 VLLTGLCKEGRTEEAIRFFRDLPSKGFEPN---VVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLA 319 (568)
Q Consensus 243 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (568)
+|.+.|-+.|..|.|+++.+.+.++.--+. ......|..-|...|-+|.|+++|..+.+.+ ..-......|+..|-
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ 152 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHH
Confidence 344444444444444444444443210000 1122234444555555555555555555433 223344455555566
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHH
Q 041458 320 YHGKTDHALKVLDEMVKGRFRPSA----ASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQE 395 (568)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (568)
...++++|+++-+++.+.+..+.. ..|..+...+....+++.|..++.+..+.+++.-..+..........|+++.
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~ 232 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQK 232 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHH
Confidence 666666666555555544322211 1122333333344555555555555555443333333333444445555555
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041458 396 AFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEE 475 (568)
Q Consensus 396 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 475 (568)
|.+.++.+.+.++.--..+...+..+|.+.|++++....+..+.+.. +....-..+...-....-.+.|..++.+-..
T Consensus 233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 233 AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 55555555555444334455666667777777777777777666542 2333333333333334444555555544433
Q ss_pred CCCCCChhhHHHHHHHHHc---cCChHHHHHHHHHHHH
Q 041458 476 YDYKPDVDNFNALLLGLCK---SRRTDLSLEVFQMMIE 510 (568)
Q Consensus 476 ~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~ 510 (568)
. +|+...+..+++.-.. .|..++-..+++.|+.
T Consensus 311 r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 311 R--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred h--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 2 4666666666665432 2345555555666654
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.6e-10 Score=107.89 Aligned_cols=287 Identities=10% Similarity=-0.027 Sum_probs=227.0
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHH
Q 041458 236 PNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILI 315 (568)
Q Consensus 236 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 315 (568)
.+......-.+-+...+++.+..++++...+. .++....+..-|.++...|+..+-..+=.++.+.. +....+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 35555566667778889999999999998776 34456666667778888888877777777777653 55778899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHH
Q 041458 316 GSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQE 395 (568)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (568)
--|.-.|+..+|.+.|.+...-+.. =...|-.+...|+-.+..|+|+..+..+-+.-+-.....+-....|.+.++.+-
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 8888889999999999988765322 335688888999999999999999988877654444445555677888999999
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCC----CChhhHHHHHHHHHhcCCHHHHHHH
Q 041458 396 AFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKY--GFT----PDSYTYSSLIRGLCMEGLIEEALEI 469 (568)
Q Consensus 396 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~~~~l~~~~~~~g~~~~a~~~ 469 (568)
|...|.+.....+. |+...+.+.......+.+.+|..+|+..... .+. --..+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 99999998876554 6777888877777889999999999877621 111 1344688999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041458 470 FVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH 529 (568)
Q Consensus 470 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 529 (568)
+++....... +..++.++.-.|...|+++.|++.|.+.+. +.|+..+...++..+..
T Consensus 478 ~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 478 YQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 9999876555 899999999999999999999999999986 68988887777775554
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=1.5e-10 Score=103.59 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMI 509 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 509 (568)
..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+.+++.+.|++.+|.+..++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34444444444444455554444433332 3444444444555555555544444444433
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=6.8e-09 Score=98.52 Aligned_cols=223 Identities=14% Similarity=0.111 Sum_probs=144.5
Q ss_pred cCChHHHHHHHHHhhhCCCCCC------hhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcC---HhhHHHHHHHHHhc
Q 041458 251 EGRTEEAIRFFRDLPSKGFEPN------VVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPT---IVTYNILIGSLAYH 321 (568)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 321 (568)
.|+..+-...|.+..+. +.|. ...|..+.+.|-..|+++.|..+|++..+...+.- ..+|..-..+=.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 44555556666655443 2221 34577788888889999999999988876543211 23444444555567
Q ss_pred CChHHHHHHHHHHHHCCCC-----------------CCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 041458 322 GKTDHALKVLDEMVKGRFR-----------------PSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGL 384 (568)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 384 (568)
.+++.|+++.++...-.-. .+...|...++.--..|-++....++++++...+.......|..
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA 518 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA 518 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7788888887776532111 12234555566556678888888888888888777666666666
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCChhhHHHHHHH--HH
Q 041458 385 AMLCGVGKVQEAFAIIQSLGNKQNSSPQ-EFYKYVITSLCR---KGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRG--LC 458 (568)
Q Consensus 385 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~ 458 (568)
..+-...-++++.+++++-......|+. ..|+..+.-+.+ ...++.|..+|++..+ |.+|...-+..|+.+ --
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEE 597 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEE 597 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHH
Confidence 6667777888888888887776666665 567777666554 2367889999999888 556554322222222 22
Q ss_pred hcCCHHHHHHHHHHHHh
Q 041458 459 MEGLIEEALEIFVVMEE 475 (568)
Q Consensus 459 ~~g~~~~a~~~~~~m~~ 475 (568)
+.|....|..++++...
T Consensus 598 e~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 598 EHGLARHAMSIYERATS 614 (835)
T ss_pred HhhHHHHHHHHHHHHHh
Confidence 35777778888877653
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.50 E-value=6.9e-09 Score=98.75 Aligned_cols=460 Identities=13% Similarity=0.091 Sum_probs=276.1
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHH
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQ 154 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 154 (568)
..+++...++..+.+++. .+-...+.....-.+...|+-++|........+..+. +.+.|..+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 345666677777776664 2223333333333455677888888887777765433 56678888777777788888888
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 041458 155 LVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGG 234 (568)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 234 (568)
.|......+ +.|...|.-+.-.-++.|+++.....-.+..+.. ......|..+..++.-.|+...|..+.++..+...
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888887753 4467777777777777788887777777776652 22556777777788888888888888888776642
Q ss_pred -CCCHhhHHHHH------HHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcC
Q 041458 235 -KPNLVSYNVLL------TGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPT 307 (568)
Q Consensus 235 -~~~~~~~~~ll------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 307 (568)
.|+...+.... ....+.|..++|.+.+..-... +.-....-.+-...+.+.+++++|..++..+... .||
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 45555444332 2345677778887777665433 1112222234455677888888888888888776 344
Q ss_pred HhhHH-HHHHHHHhcCChHHHH-HHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 041458 308 IVTYN-ILIGSLAYHGKTDHAL-KVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLA 385 (568)
Q Consensus 308 ~~~~~-~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 385 (568)
...|. .+..++.+.-+.-++. .+|....+.- +.....-..=+.......-.+..-+++....+.|+.+--.....+.
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy 330 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY 330 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH
Confidence 44444 4444444333333343 5555554431 1111111111111112222344455666666666554322222211
Q ss_pred HHHh-CCCHHH-HHHHHHHHhhCC----------CCCChhhHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCh-hhH
Q 041458 386 MLCG-VGKVQE-AFAIIQSLGNKQ----------NSSPQEFYK--YVITSLCRKGKTYQAFQLLYEMTKYGFTPDS-YTY 450 (568)
Q Consensus 386 ~~~~-~~~~~~-a~~~~~~~~~~~----------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~ 450 (568)
-.-+ ..-.++ +..+...+...+ -+|....|+ .++..+-+.|+++.|...++..+.. .|+. .-|
T Consensus 331 k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly 408 (700)
T KOG1156|consen 331 KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELY 408 (700)
T ss_pred hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHH
Confidence 1100 000011 111111121111 133444444 5677888999999999999998875 5553 456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC------CHHHHHHH-
Q 041458 451 SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP------NETTYTIL- 523 (568)
Q Consensus 451 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p------~~~~~~~l- 523 (568)
..=...+.++|++++|..++++..+.+.. |...-..-+.-..++++.++|.++.....+.|... -.-.|-.+
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccch-hHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHh
Confidence 66668899999999999999999876533 55554466677788999999999999888876411 11233333
Q ss_pred -HHHHHhcCChhHHHHHHHHHHH
Q 041458 524 -VEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 524 -l~~~~~~g~~~~a~~~~~~~~~ 545 (568)
..+|.+.|++.+|.+=+..+.+
T Consensus 488 ~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 488 DGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHH
Confidence 3567788888777766655544
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1.4e-08 Score=89.47 Aligned_cols=425 Identities=13% Similarity=0.106 Sum_probs=261.1
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGY 151 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 151 (568)
++.+-|++++|+..+..+.+. ..++...+..|.-.+.-.|.+.+|..+-....+ ++..-..|+..--+.++-++
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHH
Confidence 456789999999999987765 455666777777677778899999888776543 33334445555567777666
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH-HHHHcCCHHHHHHHHHHHH
Q 041458 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLE-AAYKERGVHAAMKLLDDII 230 (568)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~ 230 (568)
-....+.+.+ ...---+|.+..-..-.+++|++++.+.... .|+-...|.-+. .|.+..-++.+.++++-.+
T Consensus 140 ~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 140 ILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 6666655554 2223334444444445678899999888765 344444454443 4567777788888887777
Q ss_pred HcCCCCCHhhHHHHHHHHHh--cCCh---------------------------------HHHHHHHHHhhhCCCCCChhH
Q 041458 231 AKGGKPNLVSYNVLLTGLCK--EGRT---------------------------------EEAIRFFRDLPSKGFEPNVVS 275 (568)
Q Consensus 231 ~~~~~~~~~~~~~ll~~~~~--~g~~---------------------------------~~A~~~~~~~~~~~~~p~~~~ 275 (568)
+. .+.+....|.......+ +|+. +.|++++-.+.+. -+..
T Consensus 213 ~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEA 287 (557)
T KOG3785|consen 213 RQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEA 287 (557)
T ss_pred Hh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHh
Confidence 65 33344455544433333 2222 1122222111111 1122
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCC-cccHH
Q 041458 276 YNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHG-------KTDHALKVLDEMVKGRFRPS-AASYN 347 (568)
Q Consensus 276 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~-~~~~~ 347 (568)
--.|+-.|.+.++..+|..+.+++.. .++.-|..-.-.+...| ...-|.+.|.-.-+.+..-| +..-.
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence 23455568889999999998887742 22322322222222222 23456666665555544333 33445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 041458 348 PIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGK 427 (568)
Q Consensus 348 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 427 (568)
++...+.-..++++++.+++.+..--...|...++...+.+..|.+.+|.++|-.+....++.+......+..+|.+++.
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC
Confidence 66667777788999999998888877788888888899999999999999999888776665444444456678889999
Q ss_pred hhHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHH
Q 041458 428 TYQAFQLLYEMTKYGFTPDSYTY-SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQ 506 (568)
Q Consensus 428 ~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 506 (568)
++.|..++-++. -..+..+. ..+...|.+++.+--|-+.|+.+... .|+++.|. |+-....-+|.
T Consensus 444 P~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe---------GKRGACaG~f~ 509 (557)
T KOG3785|consen 444 PQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE---------GKRGACAGLFR 509 (557)
T ss_pred chHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC---------CccchHHHHHH
Confidence 999888775543 22233333 34456788889988888899888765 56666664 33333445555
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 041458 507 MMIEKGQMP-NETTYTILVEGIAHQDE 532 (568)
Q Consensus 507 ~m~~~g~~p-~~~~~~~ll~~~~~~g~ 532 (568)
.+......| ......-++..+...++
T Consensus 510 ~l~~~~~~~~p~~~~rEVvhllr~~~n 536 (557)
T KOG3785|consen 510 QLANHKTDPIPISQMREVVHLLRMKPN 536 (557)
T ss_pred HHHcCCCCCCchhHHHHHHHHHHhCCC
Confidence 554432222 23445555555555443
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.44 E-value=2.6e-08 Score=94.92 Aligned_cols=434 Identities=13% Similarity=0.065 Sum_probs=282.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM 180 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 180 (568)
|..++..| ..+++...+.+.+.+.+. .+-...+.....-.+...|+-++|........+.. ..+.+.|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 34444444 557888888888888874 22234444444445667789999999888777643 4478899999888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 041458 181 LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRF 260 (568)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 260 (568)
..++++|.+.|......+ +.|...|.-+--.-++.++++........+.+. .+.....|..+..++.-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998875 336667776666667788888777777777665 223556788888888999999999999
Q ss_pred HHHhhhCCC-CCChhHHHHHHH------HHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 041458 261 FRDLPSKGF-EPNVVSYNILLR------SLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDE 333 (568)
Q Consensus 261 ~~~~~~~~~-~p~~~~~~~l~~------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (568)
.++..+... .|+...+.-... .....|..++|.+.+..-... +......-..-...+.+.++.++|..++..
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 999877642 355555543322 345678888888888665433 122223334556778899999999999999
Q ss_pred HHHCCCCCCcccHHHHHH-HHHhcCCHHHHH-HHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC
Q 041458 334 MVKGRFRPSAASYNPIIA-RLCSEGKVDLVV-KCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSP 411 (568)
Q Consensus 334 ~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 411 (568)
++..+ ||..-|...+. ++.+..+.-++. .+|....+.-+.........+.......-.+..-..+....++|+++
T Consensus 245 Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~- 321 (700)
T KOG1156|consen 245 LLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS- 321 (700)
T ss_pred HHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc-
Confidence 99874 66666665554 443333333344 55655554432222221111222222222333444555556665543
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHH----CC----------CCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHh
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTK----YG----------FTPDSYTY--SSLIRGLCMEGLIEEALEIFVVMEE 475 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----------~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~ 475 (568)
++..+..-|-.....+--.++...+.. .| -+|....| -.++..+-+.|+++.|..+++...+
T Consensus 322 --vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 322 --VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred --hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 233333333221111111111111111 11 13444444 4566778899999999999999987
Q ss_pred CCCCCC-hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 476 YDYKPD-VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 476 ~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
+ .|+ ++.|..-.+.+...|++++|..++++..+.+ .||..+=.--..-..++.+.++|.+++....+.|.
T Consensus 400 H--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 400 H--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred c--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 5 333 4456666788999999999999999999864 55665555666677789999999999998888775
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.44 E-value=3.8e-08 Score=95.73 Aligned_cols=415 Identities=14% Similarity=0.091 Sum_probs=234.8
Q ss_pred CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhhHH
Q 041458 129 IIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVP-NAFTYS 207 (568)
Q Consensus 129 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~ 207 (568)
+.-|...|..+.-+....|+++.+-+.|++....- -.....|+.+...|...|.-..|..+++.-......| |...+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 33466666666666667777777777776655431 2245566677777777777667777666654432223 233333
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHc--CC--CCCHhhHHHHHHHHHhc----C-------ChHHHHHHHHHhhhCCCCC
Q 041458 208 FLLEAAYK-ERGVHAAMKLLDDIIAK--GG--KPNLVSYNVLLTGLCKE----G-------RTEEAIRFFRDLPSKGFEP 271 (568)
Q Consensus 208 ~li~~~~~-~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~----g-------~~~~A~~~~~~~~~~~~~p 271 (568)
..-..|.+ .+..++++.+-.+++.. +. ......|-.+.-+|... . ...++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 33333333 35555555555555442 11 11233344444444321 1 123555556655544322
Q ss_pred ChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 041458 272 NVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIA 351 (568)
Q Consensus 272 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 351 (568)
|......+.--|+..++++.|++..++..+.+-..+...|..|.-.+...+++.+|+.+.+.....- .-|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 2222222333455666677777777776666445566667766666677777777777766655431 111222222233
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCC--CCChhhHHH---HH----HHHhCCCHHHHHHHHHH-----------------Hhh
Q 041458 352 RLCSEGKVDLVVKCLDQMFHRRC--KPNEGTYNG---LA----MLCGVGKVQEAFAIIQS-----------------LGN 405 (568)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~---~~----~~~~~~~~~~a~~~~~~-----------------~~~ 405 (568)
.-...++.+++......++..-- .+-..+..- .. .....++..++...... +..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 33345666666666655542100 000000000 00 00000111111111111 010
Q ss_pred CCCC--CC------hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041458 406 KQNS--SP------QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYD 477 (568)
Q Consensus 406 ~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 477 (568)
.... |+ ...|......+.+.+..++|...+.+..+.. ......|......+...|..++|.+.|......+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 0111 11 1235566777888888999988888777642 2244566666677778899999999998888765
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 478 YKPDVDNFNALLLGLCKSRRTDLSLE--VFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 478 ~~p~~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
+. ++....++...+.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.+.|.+.|....+....
T Consensus 715 P~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 715 PD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred CC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 44 66788889999999998888877 999999864 458899999999999999999999999988887766
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=3.8e-10 Score=110.66 Aligned_cols=245 Identities=20% Similarity=0.260 Sum_probs=145.5
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 041458 119 KVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKG 198 (568)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 198 (568)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35567788899999999999999999999999998 9999988888889999999999999999988776
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHH---HHHHHHHHHH----cCCC-CCHhh-------------HHHHHHHHHhcCChHHH
Q 041458 199 LVPNAFTYSFLLEAAYKERGVHA---AMKLLDDIIA----KGGK-PNLVS-------------YNVLLTGLCKEGRTEEA 257 (568)
Q Consensus 199 ~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~----~~~~-~~~~~-------------~~~ll~~~~~~g~~~~A 257 (568)
.|-+.||+.+..+|...||+.. +.+.+..+.. .|+- |.... -...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999754 3332222221 1211 00000 01122233334555555
Q ss_pred HHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 041458 258 IRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG 337 (568)
Q Consensus 258 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (568)
++++..+...... . ....++.-+... ....+++....+...-.|+..++..++..-...|+.+.|..++.+|.+.
T Consensus 159 lkll~~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHhhCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 5555444322100 0 000012211111 1122222222221111355566666666666666666666666666666
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 041458 338 RFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG 383 (568)
Q Consensus 338 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (568)
|++.+..-|..++-+ .++...+..++.-|...|+.|+..|+.-
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHH
Confidence 655555555555433 4555555555555666666665555443
No 63
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=3.4e-08 Score=93.13 Aligned_cols=135 Identities=19% Similarity=0.111 Sum_probs=82.8
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCChhhHHHHHHHHHccCCh
Q 041458 427 KTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFV--------VMEEYDYKPDVDNFNALLLGLCKSRRT 498 (568)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~ 498 (568)
...+|.+++...-+....-..++....+.....+|+++.|.+++. .+.+.+..|- +...++..+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCC
Confidence 456666666666554222223445556666677888888888877 4554444443 344555666777776
Q ss_pred HHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhh
Q 041458 499 DLSLEVFQMMIEK--GQMPNE----TTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDF 563 (568)
Q Consensus 499 ~~a~~~~~~m~~~--g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 563 (568)
+.|..++.+.++. .-.+.. .++.-+...-.++|+-++|..+++++.+.++.+.+++..++-.|+.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR 504 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh
Confidence 6677776666541 112222 2333334444556888888888888888888888888887777764
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.41 E-value=2e-07 Score=88.93 Aligned_cols=401 Identities=11% Similarity=0.090 Sum_probs=233.5
Q ss_pred HhhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041458 133 ASSYTYLVNCLCKKGNVGYAMQLVEKMEDY-GYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLE 211 (568)
Q Consensus 133 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 211 (568)
+..|...+....++|++...+..|+..... .+......|...+......+-++.+..++++.++. ++..-.-.+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 456777777888888888888888887653 22223456888888888888888888888888754 4444667778
Q ss_pred HHHHcCCHHHHHHHHHHHHHc------CCCCCHhhHHHHHHHHHhcCCh---HHHHHHHHHhhhCCCCCC--hhHHHHHH
Q 041458 212 AAYKERGVHAAMKLLDDIIAK------GGKPNLVSYNVLLTGLCKEGRT---EEAIRFFRDLPSKGFEPN--VVSYNILL 280 (568)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~p~--~~~~~~l~ 280 (568)
.+++.+++++|.+.+...+.. ..+.+-..|..+-+...++-+. -....+++.+... -+| ...|++|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 888888888888888776543 2234555666665555554332 2233444444433 233 35678888
Q ss_pred HHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcC----------------C------hHHHHHHHHHHHHCC
Q 041458 281 RSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHG----------------K------TDHALKVLDEMVKGR 338 (568)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~------~~~a~~~~~~~~~~~ 338 (568)
+.|.+.|.+++|..++++.... ..++.-|..+.+.|++.. + ++-...-|+.+...+
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 8888888888888888887654 223333444444443211 1 112223333333221
Q ss_pred C-----------CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-------ChhhHHHHHHHHhCCCHHHHHHHH
Q 041458 339 F-----------RPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKP-------NEGTYNGLAMLCGVGKVQEAFAII 400 (568)
Q Consensus 339 ~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~a~~~~ 400 (568)
. +-++..|..-+. +..|+..+-...+.++++. +.| ..........|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 0 112222322222 2245566666666666543 122 111122256777788888888888
Q ss_pred HHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----------------ChhhHHHHHHHHHhc
Q 041458 401 QSLGNKQNSSP---QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP-----------------DSYTYSSLIRGLCME 460 (568)
Q Consensus 401 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----------------~~~~~~~l~~~~~~~ 460 (568)
++..+...+.- ..+|..-...-.++.+++.|+++.+......-.| +...|..+++.--..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 88877654432 2445555566667778888888877765321111 122345555555566
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCChhHH
Q 041458 461 GLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE-TTYTILVEGIAH---QDELELS 536 (568)
Q Consensus 461 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~g~~~~a 536 (568)
|-++....+++++.+..+. ++.........+-.+..++++.+++++-+..=-.|+. ..|+..+..+.+ .-+.+.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 7777788888877765544 3333333333344555666677666665543112332 455555544433 2346667
Q ss_pred HHHHHHHHH
Q 041458 537 AEVLKELQL 545 (568)
Q Consensus 537 ~~~~~~~~~ 545 (568)
+.+|++.++
T Consensus 570 RdLFEqaL~ 578 (835)
T KOG2047|consen 570 RDLFEQALD 578 (835)
T ss_pred HHHHHHHHh
Confidence 777777776
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=2.5e-10 Score=99.19 Aligned_cols=241 Identities=12% Similarity=0.042 Sum_probs=185.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHH
Q 041458 136 YTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTY-SFLLEAAY 214 (568)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~ 214 (568)
-+.+..+|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-+.|.+..+++.|+.++.+-.+. .|-.+|| .-..+.+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 356778889999999999888887764 366778888889999999999999999888765 4444444 45566777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHH
Q 041458 215 KERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANE 294 (568)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 294 (568)
..++.++|.++++...+. .+.++.....+...|.-.++.+.|+.+|+++.+.|+. +...|+.+.-+|.-.+++|-++.
T Consensus 302 am~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 788899999999888776 3346666667777888888999999999999888877 77888888888888888998888
Q ss_pred HHHHhccCCCCcC--HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 041458 295 LLAEMDGGDRSPT--IVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHR 372 (568)
Q Consensus 295 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 372 (568)
-|++....--.|+ ..+|..+.......|++..|.+.|+-.+..+.. ....++.+.-.-.+.|++++|..++......
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 8888765432232 456777888888889999999999888876543 5567777777778889999999999888766
Q ss_pred CCCCChhhHHH
Q 041458 373 RCKPNEGTYNG 383 (568)
Q Consensus 373 ~~~~~~~~~~~ 383 (568)
.+.--..++|.
T Consensus 459 ~P~m~E~~~Nl 469 (478)
T KOG1129|consen 459 MPDMAEVTTNL 469 (478)
T ss_pred Cccccccccce
Confidence 54444444443
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=1.8e-08 Score=98.50 Aligned_cols=290 Identities=16% Similarity=0.162 Sum_probs=185.5
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-----
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKK----- 146 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 146 (568)
.+...|++++|+..++.-... +.............+.+.|+.++|..++..++++++. |...|..+..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccccc
Confidence 445678999999888775443 3333444556677788889999999999999888632 444555555555222
Q ss_pred CChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 041458 147 GNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNL-NQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKL 225 (568)
Q Consensus 147 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 225 (568)
.+.+...++++++... . |...+...+.-.+..-..+ ..+...+..+...|++ .+|+.+-..|......+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~-y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEK-Y-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHh-C-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 2456677788877654 2 2222222222222221222 2445556666777754 3555555556655555555566
Q ss_pred HHHHHHc----C----------CCCCHh--hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHcCCC
Q 041458 226 LDDIIAK----G----------GKPNLV--SYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPN-VVSYNILLRSLCMEGR 288 (568)
Q Consensus 226 ~~~~~~~----~----------~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 288 (568)
+..+... + -+|+.. ++.-+...|-..|++++|++++++.++. .|+ +..|..-...+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 6655432 1 123333 3355566777888888888888888776 344 5677777888888888
Q ss_pred HHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCccc------H--HHHHHHHHhcCCHH
Q 041458 289 WEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAAS------Y--NPIIARLCSEGKVD 360 (568)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~--~~li~~~~~~~~~~ 360 (568)
+.+|.+.++.....+ ..|-..-+..+..+.+.|++++|.+++....+.+..|.... | .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 888888888887776 44666667777788888888888888888877654322211 1 23345777888888
Q ss_pred HHHHHHHHHhh
Q 041458 361 LVVKCLDQMFH 371 (568)
Q Consensus 361 ~a~~~~~~~~~ 371 (568)
.|++.|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88777776654
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.4e-07 Score=85.21 Aligned_cols=303 Identities=12% Similarity=0.075 Sum_probs=214.9
Q ss_pred hcCChHHHHHHHHHhhhC-CCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHH
Q 041458 250 KEGRTEEAIRFFRDLPSK-GFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHAL 328 (568)
Q Consensus 250 ~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 328 (568)
-.++...|...+-.+... -++-|+.....+.+++...|+.++|...|++....+ +-+........-.+.+.|+.+...
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHH
Confidence 344444444444333222 245577788889999999999999999998876543 112222233334456778888887
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCC
Q 041458 329 KVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQN 408 (568)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 408 (568)
.+...+.... +-....|-.-........++..|+.+-++.++.....-....--...+...++.++|.-.|+......+
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 7777766532 112333433344555677888888888888776433333322226677888999999999998776543
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHH-HHHHh-cCCHHHHHHHHHHHHhCCCCCC-hhhH
Q 041458 409 SSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLI-RGLCM-EGLIEEALEIFVVMEEYDYKPD-VDNF 485 (568)
Q Consensus 409 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~g~~~~a~~~~~~m~~~~~~p~-~~~~ 485 (568)
. +..+|..++..|...|++.+|.-+-+...+. +..+..+...+. ..|.. -..-++|.++++...+. .|+ ....
T Consensus 366 ~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV 441 (564)
T KOG1174|consen 366 Y-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV 441 (564)
T ss_pred h-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence 3 7789999999999999999999888776654 334555555552 33432 23457899999887764 344 3456
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHh
Q 041458 486 NALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQ 560 (568)
Q Consensus 486 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 560 (568)
+.+...+...|+.++++.++++... ..||...-+.|.+.+...+.+.+|...|...+..+|.+..+.+.+-+.
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 6778889999999999999999987 489999999999999999999999999999999999998887766554
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=4.8e-10 Score=113.35 Aligned_cols=269 Identities=12% Similarity=0.100 Sum_probs=189.3
Q ss_pred CCCHHhHHHHHHHHH-----hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---------cCChhhHHHHHHHHH
Q 041458 95 KPDVVQATNLLYDLC-----KANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK---------KGNVGYAMQLVEKME 160 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~ 160 (568)
..+...|...+.+.. ..+.+++|++.|++..+.... +...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 345555555555532 234689999999999987432 45566666555442 244789999999998
Q ss_pred hCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhh
Q 041458 161 DYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVS 240 (568)
Q Consensus 161 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 240 (568)
+.. |.+..++..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 874 4578888889899999999999999999999874 335677888888999999999999999999887433 2333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHh
Q 041458 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY 320 (568)
Q Consensus 241 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (568)
+..++..+...|++++|...+++......+-+...+..+..++...|+.++|...++++.... +.+....+.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 344455567789999999999998765322245557778888899999999999999876542 3344455666667777
Q ss_pred cCChHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 041458 321 HGKTDHALKVLDEMVKG-RFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRR 373 (568)
Q Consensus 321 ~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 373 (568)
.| ++|...++.+.+. ...+....+. -..+.-.|+.+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLL--PLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHH--HHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 4777777776653 1223333333 3345556676666655 7776653
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.37 E-value=3.3e-10 Score=114.57 Aligned_cols=252 Identities=12% Similarity=0.016 Sum_probs=151.5
Q ss_pred CHHHHHHHHHHhccCCCCcCHhhHHHHHHHHH---------hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 041458 288 RWEEANELLAEMDGGDRSPTIVTYNILIGSLA---------YHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGK 358 (568)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 358 (568)
.+++|...|++..+.. +.+...|..+..+|. ..++.++|...+++.++.++. +...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 3566777777766553 223444544444333 223466777777777765432 45556666666677777
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 359 VDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEM 438 (568)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (568)
+++|...++++++.++......+.....+...|++++|...+++..+.++.... .+..++..+...|++++|+..+++.
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~-~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA-AGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHhccCHHHHHHHHHHH
Confidence 777777777777765444344444456666777777777777777766554222 2233344456678888888888887
Q ss_pred HHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCC
Q 041458 439 TKYGFTP-DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK-GQMPN 516 (568)
Q Consensus 439 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~ 516 (568)
.+.. .| +...+..+..++...|++++|...+.++...... +....+.+...|...| ++|...++.+.+. ...|.
T Consensus 433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 6543 23 3444666777778888888888888876644221 3444555666666666 4677766666552 11232
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 517 ETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 517 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
...+ +-..+.-.|+.+.+..+ +++.+.+..
T Consensus 509 ~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~~ 538 (553)
T PRK12370 509 NPGL--LPLVLVAHGEAIAEKMW-NKFKNEDNI 538 (553)
T ss_pred CchH--HHHHHHHHhhhHHHHHH-HHhhccchH
Confidence 2233 33345556777766655 777766544
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=4e-08 Score=92.70 Aligned_cols=449 Identities=13% Similarity=0.097 Sum_probs=257.6
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
+.+..+|++++|.+....++..+ +.+...+..=+-++.+.+++++|+.+.+.-.... .-+...|. =..+..+.+..+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~fE-KAYc~Yrlnk~D 96 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFFE-KAYCEYRLNKLD 96 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhHH-HHHHHHHcccHH
Confidence 34456899999999999998876 5567777777778899999999995554322110 00111111 123445788999
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVP-NAFTYSFLLEAAYKERGVHAAMKLLDDI 229 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 229 (568)
+|+..++...+ .+..+...-...+-+.|++++|+.+|+.+.+.+..- |...-..++.+-.. -.+. +.+
T Consensus 97 ealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q-- 165 (652)
T KOG2376|consen 97 EALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQ-- 165 (652)
T ss_pred HHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHH--
Confidence 99999883332 234466666778889999999999999998764321 11111112211111 0111 122
Q ss_pred HHcCCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-------------CCCCh-hHHHHHHHHHHcCCCHHHHH
Q 041458 230 IAKGGKP--NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKG-------------FEPNV-VSYNILLRSLCMEGRWEEAN 293 (568)
Q Consensus 230 ~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-------------~~p~~-~~~~~l~~~~~~~g~~~~a~ 293 (568)
.....| +-..+......+...|++.+|+++++...+.+ +.... .+-..|..++-..|+-.+|.
T Consensus 166 -~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 166 -SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred -hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 221222 11222223456678999999999998883221 00011 11233555677889999999
Q ss_pred HHHHHhccCCCCcCHhhH----HHHHHHHHhcCChH-HHHHHHHHHHHCCC----------CCCcccH-HHHHHHHHhcC
Q 041458 294 ELLAEMDGGDRSPTIVTY----NILIGSLAYHGKTD-HALKVLDEMVKGRF----------RPSAASY-NPIIARLCSEG 357 (568)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~-~a~~~~~~~~~~~~----------~~~~~~~-~~li~~~~~~~ 357 (568)
.++..+++.. ++|.... |.|+..-....-++ .++..++....... ....... +.++..| .+
T Consensus 245 ~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tn 321 (652)
T KOG2376|consen 245 SIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TN 321 (652)
T ss_pred HHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hh
Confidence 9999988776 4444222 22222211111111 12222222211100 0011111 1122222 23
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHH--HHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041458 358 KVDLVVKCLDQMFHRRCKPNEGTYNGL--AMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLL 435 (568)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 435 (568)
.-+.+.++...... ..|....-..+ ...++......+..++....+..+.....+.-.++......|+++.|++++
T Consensus 322 k~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 322 KMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 33334433332221 12222222222 222333467778888887777766655666777788888999999999999
Q ss_pred H--------HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----hhhHHHHHHHHHccCChHHH
Q 041458 436 Y--------EMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEY--DYKPD----VDNFNALLLGLCKSRRTDLS 501 (568)
Q Consensus 436 ~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~----~~~~~~li~~~~~~g~~~~a 501 (568)
. .+.+.+..|- +...+...+.+.++-+.|..++...... .-.+. ..++.-++..-.+.|+-++|
T Consensus 400 ~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 8 5555555554 4456667777777766666666655421 00112 22333444455677999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 502 LEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 502 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
..+++++.+. .++|..+...++.+|.+. +.+.|..+-+++
T Consensus 478 ~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 478 SSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999986 377899999999999875 678777766654
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=7.3e-10 Score=99.80 Aligned_cols=201 Identities=11% Similarity=0.019 Sum_probs=133.5
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 041458 308 IVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAML 387 (568)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (568)
...+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|.+.+++..+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------------ 97 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN------------ 97 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------
Confidence 45566666777777777777777777665432 23445555556666666666666666665544222
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHH
Q 041458 388 CGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP-DSYTYSSLIRGLCMEGLIEEA 466 (568)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 466 (568)
+...+..+...+...|++++|.+.+++..+....+ ....+..+...+...|++++|
T Consensus 98 -----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 98 -----------------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred -----------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 23345555666677777777777777776532212 234566677777888888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 467 LEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 467 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
.+.+++..+.... +...+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 155 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8888887765333 4567777888888888888888888888775 3445666667777777888888888887777654
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=1e-09 Score=98.78 Aligned_cols=198 Identities=16% Similarity=0.124 Sum_probs=113.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 041458 98 VVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRG 177 (568)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 177 (568)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455666677777777777777777776653 2245566666667777777777777777766643 3345566666667
Q ss_pred HHhcCChHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 178 LCMLGNLNQSLQFLDRLIQKGL-VPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
+...|++++|.+.+++..+... ......+..+...+...|++++|...+++..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777665321 1123344445555555566666666665555442 1233444455555555555555
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 041458 257 AIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 257 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 299 (568)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555443 1223334444444555555555555554444
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.7e-10 Score=100.25 Aligned_cols=230 Identities=11% Similarity=0.076 Sum_probs=147.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 041458 172 NSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKE 251 (568)
Q Consensus 172 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 251 (568)
+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-++|.+..+++.|+.++.+-++. .+-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56777888888888888888777665 566677777788888888888888888777765 333444445566677777
Q ss_pred CChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHH
Q 041458 252 GRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVL 331 (568)
Q Consensus 252 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (568)
++.++|.++|+...+.. ..++.....+...|.-.++++-|+..++++...|+ .+...|+.+.-+|...++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 77888888887776552 22555555566667777777777777777777774 35667777777777777777777777
Q ss_pred HHHHHCCCCCC--cccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 041458 332 DEMVKGRFRPS--AASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNK 406 (568)
Q Consensus 332 ~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 406 (568)
.+.+..-..|+ ..+|..+.......|++..|.+.|+-.+..+........|....-.+.|++++|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 77665432222 2345555555556666666666666665554333333333333344445555555444444433
No 74
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=9.3e-12 Score=80.17 Aligned_cols=49 Identities=43% Similarity=1.059 Sum_probs=25.2
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHH
Q 041458 236 PNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLC 284 (568)
Q Consensus 236 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 284 (568)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4445555555555555555555555555555555555555555555444
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=4.8e-09 Score=101.11 Aligned_cols=243 Identities=19% Similarity=0.139 Sum_probs=158.2
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhccC-----CC-CcCHhh-HHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC-
Q 041458 274 VSYNILLRSLCMEGRWEEANELLAEMDGG-----DR-SPTIVT-YNILIGSLAYHGKTDHALKVLDEMVKG-----RFR- 340 (568)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~- 340 (568)
.+...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|++++.. |-.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666667776666666654332 10 222222 234666778888888888888877642 211
Q ss_pred C-CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCh-hhHHHH
Q 041458 341 P-SAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQ-EFYKYV 418 (568)
Q Consensus 341 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l 418 (568)
| -..+++.|..+|.+.|++++|...++.+. ++++...... .+.+ ..++.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al---------------------------~I~~~~~~~~-~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERAL---------------------------EIYEKLLGAS-HPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHH---------------------------HHHHHhhccC-hHHHHHHHHHH
Confidence 1 22345556667888888888887776543 3333311111 1111 235566
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC---CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC-Chhh
Q 041458 419 ITSLCRKGKTYQAFQLLYEMTKY---GFTPD----SYTYSSLIRGLCMEGLIEEALEIFVVMEEY----DY--KP-DVDN 484 (568)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~--~p-~~~~ 484 (568)
+..++..+++++|..++.+..+. -+.++ ..+++.|...|.+.|++++|.++++.+... +. .+ ....
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 67777788888888887765431 12222 357889999999999999999999988631 11 11 2446
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHH----CCC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 485 FNALLLGLCKSRRTDLSLEVFQMMIE----KGQ-MP-NETTYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 485 ~~~li~~~~~~g~~~~a~~~~~~m~~----~g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
++.|...|.+.++..+|.++|.+... .|. .| ...+|..|...|...|+++.|.++.+.+.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 77888899999999999999887654 222 23 34788999999999999999999998876
No 76
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1.2e-11 Score=79.70 Aligned_cols=49 Identities=29% Similarity=0.779 Sum_probs=23.4
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 041458 166 TNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAY 214 (568)
Q Consensus 166 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 214 (568)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=2.4e-07 Score=90.32 Aligned_cols=409 Identities=14% Similarity=0.093 Sum_probs=266.9
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCcHHH
Q 041458 92 KGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYG-YPTNTVT 170 (568)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~ 170 (568)
..+..|...|..+.-++.+.|+++.+.+.|++....-+ -....|..+...|...|.-..|..+++.-.... -+++...
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 34556888999999999999999999999999886543 256789999999999999999999998766543 2334444
Q ss_pred HHHHHHHHH-hcCChHHHHHHHHHHHHC--CC--CCCHhhHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCC
Q 041458 171 YNSLVRGLC-MLGNLNQSLQFLDRLIQK--GL--VPNAFTYSFLLEAAYKE-----------RGVHAAMKLLDDIIAKGG 234 (568)
Q Consensus 171 ~~~li~~~~-~~g~~~~a~~~~~~m~~~--~~--~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~~~ 234 (568)
+-..-..|. +.+..++++....+.... +. ......|..+.-+|... ....++.+.+++..+.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 444444444 446777777777776652 11 12334444444444321 123577888888877644
Q ss_pred -CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHH
Q 041458 235 -KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNI 313 (568)
Q Consensus 235 -~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 313 (568)
.|++..| +.--|+..++++.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+.+.....- ..|......
T Consensus 476 ~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 476 TDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred CCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 3433333 333567889999999999999888667789999999999999999999999988765431 111111111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH---------------------C-------CCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 041458 314 LIGSLAYHGKTDHALKVLDEMVK---------------------G-------RFRPSAASYNPIIARLCSEGKVDLVVKC 365 (568)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~~~~---------------------~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~ 365 (568)
-+..-...++.++++.....++. . ...-.+.++..+....... ...+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~--~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ--LKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh--hhhcccc
Confidence 11111223444443332222110 0 1111122222222211111 1100000
Q ss_pred HHHHhhCC--CCCChhhH-------HHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 041458 366 LDQMFHRR--CKPNEGTY-------NGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLY 436 (568)
Q Consensus 366 ~~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 436 (568)
.. +.... ..|+...+ .....+.+.+..++|...+.+.....+. ....|......+...|..++|.+.|.
T Consensus 631 ~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 631 LK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred cc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 00 11111 12332222 1256777788999998888887765432 44556666677888999999999999
Q ss_pred HHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 437 EMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALE--IFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 437 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
..... .|+ .....++...+.+.|+..-|.. ++..+.+.++. +...|..+...+-+.|+.+.|.+.|+...+.
T Consensus 709 ~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 709 VALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 88864 555 4578899999999998877777 99999988776 8999999999999999999999999998874
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.23 E-value=5.1e-08 Score=95.37 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLC 493 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 493 (568)
+..+...|...|+.++|++++++.++. .|+ ...|..-...+-+.|++++|.+.++.....+.. |-..-+..+..+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 355567777888888999988888876 454 567777888888899999999988888877655 7777777788888
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCH------HHH--HHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 494 KSRRTDLSLEVFQMMIEKGQMPNE------TTY--TILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~g~~p~~------~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
++|++++|.+++....+.+..|-. ..| .....+|.+.|++..|.+.+..+.+.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 889999998888888776544422 122 23456788888888888777766543
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.17 E-value=4.7e-08 Score=81.42 Aligned_cols=210 Identities=13% Similarity=-0.018 Sum_probs=139.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041458 309 VTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLC 388 (568)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (568)
.+...|.-.|.+.|+...|..-+++.++..+. +..+|..+...|-+.|+.+.|.+.|++.+...+.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~------------- 101 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN------------- 101 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-------------
Confidence 34555666777888888888888887776533 5566777777777777777777777777765433
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 041458 389 GVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP-DSYTYSSLIRGLCMEGLIEEAL 467 (568)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~ 467 (568)
+..+.|.....+|..|++++|.+.|++....-.-+ -..+|..+..+..+.|+.+.|.
T Consensus 102 ----------------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~ 159 (250)
T COG3063 102 ----------------------NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAE 159 (250)
T ss_pred ----------------------ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHH
Confidence 23335555556666666666666666665432111 2346666666667777777777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 468 EIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 468 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
++|++..+.... .......+.....+.|++-.|..+++.....+. ++...+...|+.-...|+.+.+-++=..+.+..
T Consensus 160 ~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 160 EYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 777777765443 455666677777777777777777777776643 677777777777777777777777777777777
Q ss_pred CCCHHHHHH
Q 041458 548 VVSESAVER 556 (568)
Q Consensus 548 ~~~~~~~~~ 556 (568)
|.+.+....
T Consensus 238 P~s~e~q~f 246 (250)
T COG3063 238 PYSEEYQTF 246 (250)
T ss_pred CCcHHHHhH
Confidence 666554433
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=5.7e-08 Score=80.90 Aligned_cols=208 Identities=12% Similarity=0.030 Sum_probs=161.3
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 041458 274 VSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARL 353 (568)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 353 (568)
.+...|.-.|...|+...|..-+++..+.+ +.+..+|..+...|.+.|+.+.|.+.|++.++.... +..+.|....-+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 456678888999999999999999999886 567889999999999999999999999999987644 667788888888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 041458 354 CSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQ 433 (568)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 433 (568)
|..|++++|...|++......-+ ....+|..+..+..+.|+.+.|..
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~---------------------------------~~s~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYG---------------------------------EPSDTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCC---------------------------------CcchhhhhhHHHHhhcCCchhHHH
Confidence 99999999999998887642111 123456666667777888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 041458 434 LLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQ 513 (568)
Q Consensus 434 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 513 (568)
.|++.++.... ...+...+.......|++..|..+++.....+. ++..+....|..--+.|+.+.+-++=.++...
T Consensus 161 ~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~-- 236 (250)
T COG3063 161 YLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL-- 236 (250)
T ss_pred HHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 88887775322 345667777888888888888888888776655 67887777788888888888887777666653
Q ss_pred CCCHHHH
Q 041458 514 MPNETTY 520 (568)
Q Consensus 514 ~p~~~~~ 520 (568)
-|...-+
T Consensus 237 fP~s~e~ 243 (250)
T COG3063 237 FPYSEEY 243 (250)
T ss_pred CCCcHHH
Confidence 4544444
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=1.8e-08 Score=97.26 Aligned_cols=236 Identities=17% Similarity=0.141 Sum_probs=121.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhC-----CC-CCcHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC-C
Q 041458 135 SYTYLVNCLCKKGNVGYAMQLVEKMEDY-----GY-PTNTV-TYNSLVRGLCMLGNLNQSLQFLDRLIQK-----GLV-P 201 (568)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~-~ 201 (568)
+...+...|...|+++.|..+++...+. |. .|.+. ..+.+...|...+++++|..+|+++... |.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444555555666666665555554432 10 11221 2233555556666666666666655432 211 1
Q ss_pred -CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCCH-hhHHHHHHHHHhcCChHHHHHHHHHhhhC---CCC
Q 041458 202 -NAFTYSFLLEAAYKERGVHAAMKLLDDIIAK-----GG-KPNL-VSYNVLLTGLCKEGRTEEAIRFFRDLPSK---GFE 270 (568)
Q Consensus 202 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~ 270 (568)
-..+++.|..+|.+.|++++|...+++..+. |. .|.+ ..++.+...++..+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1234444555566666666665555544321 11 1122 22444555566666666666666554321 111
Q ss_pred CC----hhHHHHHHHHHHcCCCHHHHHHHHHHhccC----CC---CcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH---
Q 041458 271 PN----VVSYNILLRSLCMEGRWEEANELLAEMDGG----DR---SPTIVTYNILIGSLAYHGKTDHALKVLDEMVK--- 336 (568)
Q Consensus 271 p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--- 336 (568)
++ ..+++.|...|...|++++|.++++++... +. .-....++.+...|.+.++..+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 11 345666777777777777777776665431 11 11234456666666666666666666655332
Q ss_pred -CCC--CCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 041458 337 -GRF--RPSAASYNPIIARLCSEGKVDLVVKCLDQMF 370 (568)
Q Consensus 337 -~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 370 (568)
.|+ +-...+|..|...|.+.|+++.|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 1123456666677777777777777766665
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=1e-07 Score=88.30 Aligned_cols=219 Identities=16% Similarity=0.089 Sum_probs=150.6
Q ss_pred cCChHHHHHHHHHHHhCCC-CC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhH
Q 041458 76 DHKLNDAFLQLERMVSKGH-KP--DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYA 152 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 152 (568)
.+..+.++..+.+++.... .| ....|..+...+.+.|+.+.|...|+...+... .+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 4667788888888886432 11 245577788888999999999999999998753 3678899999999999999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 041458 153 MQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAK 232 (568)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 232 (568)
.+.|++..+.. |.+..+|..+..++...|++++|.+.|++..+.. |+..............++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999998753 3357788888888999999999999999998763 33322222222334567889999999765543
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh---CCCC---CChhHHHHHHHHHHcCCCHHHHHHHHHHhccCC
Q 041458 233 GGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPS---KGFE---PNVVSYNILLRSLCMEGRWEEANELLAEMDGGD 303 (568)
Q Consensus 233 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 303 (568)
. .++...+ .+. ....|+..++ +.+..+.+ ..+. .....|..+...+.+.|++++|...|++....+
T Consensus 195 ~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 2332222 222 2334555443 23333332 1111 123467778888888888888888888887665
No 83
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=6.8e-07 Score=87.66 Aligned_cols=396 Identities=12% Similarity=0.111 Sum_probs=234.1
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC-C-------C-CCCHhhHHHHHH
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSS-G-------I-IPDASSYTYLVN 141 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-------~-~~~~~~~~~li~ 141 (568)
.-|...|+.+.|.+..+-+. +...|..|.+.|.+.++++-|.-.+..|... | . .++ ..-.....
T Consensus 736 SfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 34566799999988776553 3467999999999999999988777666532 1 1 122 22222333
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH
Q 041458 142 CLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHA 221 (568)
Q Consensus 142 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 221 (568)
.....|.+++|+.+|.+-++ |..|=+.|-..|.|++|+++-+.--.. . -..||......+-..++.+.
T Consensus 809 LAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHH
Confidence 44577899999999988876 445566777889999999987653221 1 22455555666666778888
Q ss_pred HHHHHHHH----------HHcC---------CCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHH
Q 041458 222 AMKLLDDI----------IAKG---------GKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRS 282 (568)
Q Consensus 222 a~~~~~~~----------~~~~---------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 282 (568)
|++.|++. +... -..|...|.-....+-..|+.+.|+.+|..... |-.+++.
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI 947 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRI 947 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheee
Confidence 88777653 1110 012333444444444556777777777776552 4566777
Q ss_pred HHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-----
Q 041458 283 LCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEG----- 357 (568)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----- 357 (568)
.|-.|+.++|-++-++-. |......|.+.|-..|++.+|...|-+... +...|..|-.++
T Consensus 948 ~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred EeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHH
Confidence 777888888887776532 666777788888888888888888876543 222232222221
Q ss_pred ----------CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHH--------H--hhCCCCCChhhHHH
Q 041458 358 ----------KVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQS--------L--GNKQNSSPQEFYKY 417 (568)
Q Consensus 358 ----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~--~~~~~~~~~~~~~~ 417 (568)
+.-.|-.+|++.- ...-.++..|-+.|.+..|+++--+ + .......|+...+-
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g-------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELG-------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcc-------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 1222223333221 1111224556666666666654221 1 12233445566666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCh----hhHHHHHHHH
Q 041458 418 VITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME-EYDYKPDV----DNFNALLLGL 492 (568)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~p~~----~~~~~li~~~ 492 (568)
-.+.++.+.++++|..++....+ |..-+..| ...++.-..++-+.|. ..+-.|+. .....+...|
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c 1155 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLARE---------FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELC 1155 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHH
Confidence 66667777777777777765543 22333333 3333334444444444 22223333 3355667788
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 041458 493 CKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELEL 535 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 535 (568)
.+.|.+..|.+-|.++-++ ...++++.++|+.++
T Consensus 1156 ~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1156 LQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 8888888887777665432 123455666666554
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=4.1e-07 Score=85.21 Aligned_cols=436 Identities=13% Similarity=0.029 Sum_probs=231.4
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD-ASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 149 (568)
+..+..|+++.|+..|-+.+...+ +|.+.|..-..+|++.|++++|++=-.+.++. .|+ ...|+-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 345677888888888888777644 48888888888888888888887766666554 344 34677777788888888
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH-----HHHHcCCHHHHHH
Q 041458 150 GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLE-----AAYKERGVHAAMK 224 (568)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~-----~~~~~~~~~~a~~ 224 (568)
++|+..|.+-.+.. +.|...++-+..++. .+.+. +.. .-++..|..+.. .+.....+. .
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~---~ 150 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYV---K 150 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHH---H
Confidence 88888888877652 345666666666661 11111 111 112333332221 111111111 1
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH-----hhhC-------CCCCChhHHHHHHHHHHcCCCHHHH
Q 041458 225 LLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRD-----LPSK-------GFEPNVVSYNILLRSLCMEGRWEEA 292 (568)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-----~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a 292 (568)
+++.+. . ++... ..|..-..+..+.-.+.. +... +..|.. -.....-..++..+-
T Consensus 151 ~l~~~~-~----~p~~l----~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~d~~ee 217 (539)
T KOG0548|consen 151 ILEIIQ-K----NPTSL----KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCK----QEHNGFPIIEDNTEE 217 (539)
T ss_pred HHHHhh-c----CcHhh----hcccccHHHHHHHHHHhcCccccccccccccCCCCCCccc----ccCCCCCccchhHHH
Confidence 111111 1 11110 111111111111111110 0001 111210 000000000000000
Q ss_pred HHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 041458 293 NELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHR 372 (568)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 372 (568)
.+ ...-..-...+.+...+..+++.|++-+....+.. -+..-++....+|...|.+..+....+...+.
T Consensus 218 ~~---------~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~ 286 (539)
T KOG0548|consen 218 RR---------VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV 286 (539)
T ss_pred HH---------HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH
Confidence 00 00012234456666667777777777777766654 24444555556677777777666666665554
Q ss_pred CCCCChhhHHH--------HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 041458 373 RCKPNEGTYNG--------LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFT 444 (568)
Q Consensus 373 ~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 444 (568)
|...- ..++. ...+.+.++++.+...|++.......|+. ..+....+++....+...-. .
T Consensus 287 gre~r-ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~ 354 (539)
T KOG0548|consen 287 GRELR-ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--N 354 (539)
T ss_pred hHHHH-HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--C
Confidence 42211 11111 12444556677777777765544333322 12223334444433333221 2
Q ss_pred CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041458 445 PDS-YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTIL 523 (568)
Q Consensus 445 p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 523 (568)
|.. .-...-...+.+.|++..|.+.|.++++..+. |...|....-+|.+.|.+..|++-.+..++.+ ++....|..=
T Consensus 355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RK 432 (539)
T KOG0548|consen 355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRK 432 (539)
T ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHH
Confidence 221 11122245567778888888888888776644 77788888888888888888888777777652 3344555555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhh
Q 041458 524 VEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDF 563 (568)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 563 (568)
..++....+++.|.+.|++.++.++.+.+....+.+++..
T Consensus 433 g~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 433 GAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 5566666778888888888888888777777766666553
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.10 E-value=1.3e-07 Score=87.50 Aligned_cols=218 Identities=14% Similarity=0.073 Sum_probs=143.9
Q ss_pred CChhHHHHHHHHHHHCCC-CCC--HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHH
Q 041458 112 NKMKKAIKVMEMMVSSGI-IPD--ASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSL 188 (568)
Q Consensus 112 ~~~~~A~~~~~~~~~~~~-~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 188 (568)
+..+.++.-+.+++.... .|+ ...|..+...|...|+.++|...|++..+.. |.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456667777777775421 122 3457777778888899999999998888763 456788899999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 041458 189 QFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKG 268 (568)
Q Consensus 189 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 268 (568)
+.|++..+.... +..+|..+...+...|++++|.+.|++..+.. |+..........+...++.++|...|.+....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 999998876322 56677778888888899999999998888763 32221222222334567888999888665433
Q ss_pred CCCChhHHHHHHHHHHcCCCHHHHHHHHHHhcc---CCC---CcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 041458 269 FEPNVVSYNILLRSLCMEGRWEEANELLAEMDG---GDR---SPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGR 338 (568)
Q Consensus 269 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (568)
..|+...+ .+.. ...|+..++ +.++.+.+ ... +.....|..+...+.+.|+.++|...|++..+.+
T Consensus 195 ~~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 12332222 2222 234444333 23333332 111 1123567788888888888888888888888764
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=2.5e-07 Score=79.92 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=22.4
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVS 126 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 126 (568)
+..++.+|++++..-.+.. +.+....+.|...|....++..|-..++++-.
T Consensus 22 ~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q 72 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ 72 (459)
T ss_pred HHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444333331 11344444444444444445555555544443
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4.7e-06 Score=75.60 Aligned_cols=167 Identities=11% Similarity=0.069 Sum_probs=91.8
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHH
Q 041458 199 LVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPN-LVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYN 277 (568)
Q Consensus 199 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 277 (568)
++.|+.....+.+.+...|+.++|...|++.... .|+ ........-.+.+.|+.+....+...+.... +-....|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 3445556666666777777777777777666544 121 1112222223345566666655555554331 11222333
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 041458 278 ILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEG 357 (568)
Q Consensus 278 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 357 (568)
.-.......++++.|+.+-++.+..+ +.+...+..-...+...|++++|.-.|+...... +.+..+|..++..|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhc
Confidence 33334445566667777666666543 3344444444556666677777777777665542 235566777777777777
Q ss_pred CHHHHHHHHHHHh
Q 041458 358 KVDLVVKCLDQMF 370 (568)
Q Consensus 358 ~~~~a~~~~~~~~ 370 (568)
.+.+|.-+-+...
T Consensus 383 ~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 383 RFKEANALANWTI 395 (564)
T ss_pred hHHHHHHHHHHHH
Confidence 7777665555443
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.08 E-value=1.5e-06 Score=83.79 Aligned_cols=268 Identities=14% Similarity=0.090 Sum_probs=141.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH-hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 99 VQATNLLYDLCKANKMKKAIKVMEMMVSSGI-IPDA-SSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
..|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++..+. .|.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD-YPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHH-hH
Confidence 3445555555566777776666666554321 1121 11222233456677888888888877765 2334444442 22
Q ss_pred HHHh----cCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 041458 177 GLCM----LGNLNQSLQFLDRLIQKGLVPN-AFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKE 251 (568)
Q Consensus 177 ~~~~----~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 251 (568)
.+.. .+....+.+.+... .+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 2222 33444444444431 111222 2333445556777888888888888887763 33456667777778888
Q ss_pred CChHHHHHHHHHhhhCCC-CCCh--hHHHHHHHHHHcCCCHHHHHHHHHHhccCCC-CcCHhhH-H--HHHHHHHhcCCh
Q 041458 252 GRTEEAIRFFRDLPSKGF-EPNV--VSYNILLRSLCMEGRWEEANELLAEMDGGDR-SPTIVTY-N--ILIGSLAYHGKT 324 (568)
Q Consensus 252 g~~~~A~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~ 324 (568)
|++++|..++++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++..+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 888888888877665422 1222 2344677777888888888888887653321 1111111 1 223333344433
Q ss_pred HHHHHH--HHHHHHCCCCCCcccHH--HHHHHHHhcCCHHHHHHHHHHHhh
Q 041458 325 DHALKV--LDEMVKGRFRPSAASYN--PIIARLCSEGKVDLVVKCLDQMFH 371 (568)
Q Consensus 325 ~~a~~~--~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~ 371 (568)
..+.++ ...............+. ....++...|+.+.|..+++.+..
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 333332 11111111011111222 344456667777777777776654
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.04 E-value=2e-06 Score=82.93 Aligned_cols=310 Identities=9% Similarity=-0.034 Sum_probs=145.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHh-hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHH---
Q 041458 204 FTYSFLLEAAYKERGVHAAMKLLDDIIAKGG-KPNLV-SYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNI--- 278 (568)
Q Consensus 204 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--- 278 (568)
..|..+...+...++.+.+.+.+.+...... .++.. ........+...|++++|.+++++..+.... +...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHH
Confidence 3444555555556666666665555544311 11211 1112233445667777777777776655221 2223331
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 041458 279 LLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGK 358 (568)
Q Consensus 279 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 358 (568)
........+..+.+.+.++... ...+........+...+...|++++|.+.+++..+.... +...+..+...+...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCC
Confidence 1111122344444555444311 111222333444555666777777777777777665422 44455666666677777
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 359 VDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEM 438 (568)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (568)
+++|...+++.......+... ....|..+...+...|+.++|..++++.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~-------------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSML-------------------------------RGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHhhhhccCCCcch-------------------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777766665542211110 0112334455555666666666666655
Q ss_pred HHCCCCCC-hhhH-H--HHHHHHHhcCCHHHHHHH--HHHH-HhCCC-CCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 439 TKYGFTPD-SYTY-S--SLIRGLCMEGLIEEALEI--FVVM-EEYDY-KPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 439 ~~~~~~p~-~~~~-~--~l~~~~~~~g~~~~a~~~--~~~m-~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
......+. .... + .++.-+...|....+.++ .... ..... ............++...|+.++|..+++.+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 213 IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 43211011 1111 1 222222333332222222 1111 11100 11111122455566777778888877777765
Q ss_pred CCCC-------C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 511 KGQM-------P-NETTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 511 ~g~~-------p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
.... . .........-++...|+.++|.+.+...+...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 293 RASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3211 0 11122222234556788888888877776554
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.7e-05 Score=80.02 Aligned_cols=391 Identities=13% Similarity=0.113 Sum_probs=210.2
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH----------HHHHHHHHCCC---------------
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAI----------KVMEMMVSSGI--------------- 129 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~----------~~~~~~~~~~~--------------- 129 (568)
+++++.--+..++..++.|.. |..++|.|...|...++-.+-. .+=.-..++++
T Consensus 850 kRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~e 928 (1666)
T KOG0985|consen 850 KRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLE 928 (1666)
T ss_pred hhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHH
Confidence 567777778888888888765 8888888888877554433211 11111111110
Q ss_pred ----CCCHhhHHHHHHHHHhcCChhh-----------HHHHHHHHHhCCCC--CcHHHHHHHHHHHHhcCChHHHHHHHH
Q 041458 130 ----IPDASSYTYLVNCLCKKGNVGY-----------AMQLVEKMEDYGYP--TNTVTYNSLVRGLCMLGNLNQSLQFLD 192 (568)
Q Consensus 130 ----~~~~~~~~~li~~~~~~g~~~~-----------a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (568)
......|-...+.+.+..+.+- -+++.++..+-+++ .|+..-..-+.++...+-..+-.++++
T Consensus 929 lI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLE 1008 (1666)
T KOG0985|consen 929 LINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLE 1008 (1666)
T ss_pred HHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 0011122233333333333332 23456666654433 356667777899999999999999999
Q ss_pred HHHHCC--CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC--
Q 041458 193 RLIQKG--LVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKG-- 268 (568)
Q Consensus 193 ~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-- 268 (568)
++.-.. +.-+...-+.++-...+.. .....+..+++-.-. .| .+...+..++-+++|..+|+...-.+
T Consensus 1009 KIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~rLdnyD-a~------~ia~iai~~~LyEEAF~ifkkf~~n~~A 1080 (1666)
T KOG0985|consen 1009 KIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINRLDNYD-AP------DIAEIAIENQLYEEAFAIFKKFDMNVSA 1080 (1666)
T ss_pred HHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHHhccCC-ch------hHHHHHhhhhHHHHHHHHHHHhcccHHH
Confidence 986431 1112223344444433332 233333333332221 01 11222233344444444444321100
Q ss_pred -------------------CCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHH
Q 041458 269 -------------------FEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALK 329 (568)
Q Consensus 269 -------------------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 329 (568)
---.+..|..+..+-.+.|...+|.+-|-+. .|+..|..+++...+.|.+++-.+
T Consensus 1081 ~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1081 IQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred HHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 0013456677777777777777776665432 256667777777777777777777
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhCCC
Q 041458 330 VLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQN 408 (568)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~ 408 (568)
.+....+..-.|.+ =..+|-+|++.++..+....+. -|+...... ...+...+.++.|.-+|...
T Consensus 1155 yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----- 1220 (1666)
T KOG0985|consen 1155 YLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV----- 1220 (1666)
T ss_pred HHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh-----
Confidence 66655554433333 3566777777776665444331 234333333 44555566666666666433
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 041458 409 SSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNAL 488 (568)
Q Consensus 409 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 488 (568)
..|..+...+...|++..|...-++.- +..||..+-.+|...+.+.-| +|...++.....-...+
T Consensus 1221 ----SN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeel 1285 (1666)
T KOG0985|consen 1221 ----SNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEEL 1285 (1666)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHH
Confidence 337777778888888887776655432 455676666666655444322 23333333344455566
Q ss_pred HHHHHccCChHHHHHHHHHHH
Q 041458 489 LLGLCKSRRTDLSLEVFQMMI 509 (568)
Q Consensus 489 i~~~~~~g~~~~a~~~~~~m~ 509 (568)
+..|-..|.+++-+.+++...
T Consensus 1286 i~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1286 IEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHhhh
Confidence 666666666666666655543
No 91
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.8e-05 Score=79.86 Aligned_cols=84 Identities=13% Similarity=0.178 Sum_probs=62.5
Q ss_pred hhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC-----------CCCCCHhhHHHHHH
Q 041458 73 RHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSS-----------GIIPDASSYTYLVN 141 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~~~~~li~ 141 (568)
|.-...++++++.++.|+..++..|..+...+..-|..+--.+..+++|+....- ++.-|+.+.-..|.
T Consensus 653 yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIq 732 (1666)
T KOG0985|consen 653 YFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQ 732 (1666)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHH
Confidence 4455677888888888888888878777777777777776677777888776542 24557777777888
Q ss_pred HHHhcCChhhHHHHH
Q 041458 142 CLCKKGNVGYAMQLV 156 (568)
Q Consensus 142 ~~~~~g~~~~a~~~~ 156 (568)
+.++.|++.+..++.
T Consensus 733 AA~kt~QikEvERic 747 (1666)
T KOG0985|consen 733 AACKTGQIKEVERIC 747 (1666)
T ss_pred HHHhhccHHHHHHHH
Confidence 888888887776654
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=1.8e-06 Score=74.69 Aligned_cols=316 Identities=17% Similarity=0.171 Sum_probs=185.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHH-HHHHH
Q 041458 100 QATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNS-LVRGL 178 (568)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~ 178 (568)
.+..++..+.+..++++|++++..-.++.. .+....+.|..+|-...++..|-..++++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 366777778888899999999888877752 26677888888888888999999999888764 345444433 34556
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH--HHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 179 CMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAA--YKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
-+.+.+.+|+++...|... ++...-..-+.+. ...+++..+..+.++....| +..+.+.......+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 6778888999988887542 2222222223332 34677888888888776432 44455555556678899999
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhH----HHHHHHHHhcCChHHHHHHHH
Q 041458 257 AIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTY----NILIGSLAYHGKTDHALKVLD 332 (568)
Q Consensus 257 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~ 332 (568)
|.+-|+...+-+---....||.-+ +..+.|+.+.|++...++.++|++..+..- ...++. ...|+. ..+..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh~ 237 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLHQ 237 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHHH
Confidence 999998877653332445666444 455678889999999998888865221100 000000 000000 00000
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC
Q 041458 333 EMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRR-CKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSP 411 (568)
Q Consensus 333 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 411 (568)
.. -...+|.-...+.+.++++.|.+.+-+|..+. ...|+++...+...-..+++-+..+-+.-+.+.++ .+
T Consensus 238 Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 238 SA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred HH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CC
Confidence 00 00112222334455666666666665554321 12344444443333334445455554444444444 34
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYE 437 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~ 437 (568)
..+|..++-.||++.-++-|-.++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 55666666667777666666666644
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=4.2e-06 Score=78.65 Aligned_cols=407 Identities=14% Similarity=0.032 Sum_probs=206.3
Q ss_pred CCchhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 041458 69 NNDTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGN 148 (568)
Q Consensus 69 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 148 (568)
++.+|+..|++++|++=-..-++.. +.-...|+....++.-.|++++|+.-|.+-++... .+...++-+..++.
T Consensus 42 rsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~---- 115 (539)
T KOG0548|consen 42 RSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDP-SNKQLKTGLAQAYL---- 115 (539)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCC-chHHHHHhHHHhhh----
Confidence 3578899999999987666666542 22356799999999999999999999999988753 25666777777761
Q ss_pred hhhHHHHHHHHHhCCCCCcHHHHHHHHH-----HHHhcCChHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHHcCCHH
Q 041458 149 VGYAMQLVEKMEDYGYPTNTVTYNSLVR-----GLCMLGNLNQSLQFLDRLIQKGLVPNAFT---YSFLLEAAYKERGVH 220 (568)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~li~-----~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~~~~ 220 (568)
.+.+. +... .++..|..+.. .+.....+..-++.+..-.. +.-. ...++.+.......+
T Consensus 116 ~~~~~-----~~~~---~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~-----~l~~~l~d~r~m~a~~~l~~~~ 182 (539)
T KOG0548|consen 116 EDYAA-----DQLF---TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT-----SLKLYLNDPRLMKADGQLKGVD 182 (539)
T ss_pred HHHHh-----hhhc---cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH-----hhhcccccHHHHHHHHHHhcCc
Confidence 11111 1111 13333333322 22222222222222211110 1111 111121111111100
Q ss_pred HHHHHHHHHHHcC-------CCCCHhhHHHHHHHHHhcCC-hHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHH
Q 041458 221 AAMKLLDDIIAKG-------GKPNLVSYNVLLTGLCKEGR-TEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEA 292 (568)
Q Consensus 221 ~a~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 292 (568)
.- .....| ..|... .....-..++ .++... +.-..-...+..+..+..+++.|
T Consensus 183 ~~-----~~~~~~~~~~~~~~~p~~~----~~~~~~~~~d~~ee~~~----------k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 183 EL-----LFYASGIEILASMAEPCKQ----EHNGFPIIEDNTEERRV----------KEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cc-----cccccccccCCCCCCcccc----cCCCCCccchhHHHHHH----------HHhhhHHHHHHHHHHHhhhHHHH
Confidence 00 011111 112100 0000000000 000000 00112234566666677777777
Q ss_pred HHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHH-------HHHHHHhcCCHHHHHHH
Q 041458 293 NELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNP-------IIARLCSEGKVDLVVKC 365 (568)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~ 365 (568)
.+.+....... .+..-++....+|...|...+....-++..+.|.. ...-|+. +..+|.+.++++.++..
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 77777766654 34555566666777777777666665555554322 1112222 23355566777888888
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 041458 366 LDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP 445 (568)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 445 (568)
|.+.+.....|+...- ....+++........-.++.. ..-...-...+.+.|++..|+..+.++++.. +-
T Consensus 321 ~~kaLte~Rt~~~ls~--------lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSK--------LKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HHHHhhhhcCHHHHHH--------HHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 8877665555443322 122333333333322222111 1111122455667778888888888777764 33
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041458 446 DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVE 525 (568)
Q Consensus 446 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 525 (568)
|...|....-+|.+.|.+..|++--+...+.... ....|.-=..++....++++|.+.|++.++. .|+..-+.--+.
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYR 467 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 5667777777777777777777766666655221 3334444444555556777777777777764 354444443343
Q ss_pred HHHh
Q 041458 526 GIAH 529 (568)
Q Consensus 526 ~~~~ 529 (568)
-|..
T Consensus 468 rc~~ 471 (539)
T KOG0548|consen 468 RCVE 471 (539)
T ss_pred HHHH
Confidence 4443
No 94
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.98 E-value=3.4e-05 Score=72.73 Aligned_cols=426 Identities=11% Similarity=0.065 Sum_probs=235.5
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHH
Q 041458 95 KPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSL 174 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 174 (568)
+-|+.+|+.||.-+..+ .++++++.++++... ++.....|..-|..-.+..+++...++|.+....- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 55888999998877655 889999999988864 23356678888888888899999999998877642 356677776
Q ss_pred HHHHHhc-CChH----HHHHHHHHHH-HCCCCCCH-hhHHHHHHH---------HHHcCCHHHHHHHHHHHHHcCCCCCH
Q 041458 175 VRGLCML-GNLN----QSLQFLDRLI-QKGLVPNA-FTYSFLLEA---------AYKERGVHAAMKLLDDIIAKGGKPNL 238 (568)
Q Consensus 175 i~~~~~~-g~~~----~a~~~~~~m~-~~~~~~~~-~~~~~li~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~ 238 (568)
+.---+. |+.. ...+.|+-.. +.|+.+-. ..|+..+.. +..+.+++...+++++++..-...=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 6644332 2222 2233344333 33433322 234444332 23344556666666666544221112
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhcc--CCCCcCH--------
Q 041458 239 VSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDG--GDRSPTI-------- 308 (568)
Q Consensus 239 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~-------- 308 (568)
..|+-.. ...+. .|..|-..++. -+...+..|.++++++.. .|.....
T Consensus 173 kLW~DY~-----------------~fE~~---IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T 230 (656)
T KOG1914|consen 173 KLWKDYE-----------------AFEQE---INIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGT 230 (656)
T ss_pred HHHHHHH-----------------HHHHH---HHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Confidence 2233211 11000 01111111110 111222333333333211 1110000
Q ss_pred -------hhHHHHHHHHHhcC------Ch--HHHHHHHHHHH-HCCCCCCcccHHH-----HHHHHHhcCC-------HH
Q 041458 309 -------VTYNILIGSLAYHG------KT--DHALKVLDEMV-KGRFRPSAASYNP-----IIARLCSEGK-------VD 360 (568)
Q Consensus 309 -------~~~~~l~~~~~~~g------~~--~~a~~~~~~~~-~~~~~~~~~~~~~-----li~~~~~~~~-------~~ 360 (568)
..|-.+|..=...+ .. ....-.+++.+ -.+..|+.....+ .-+.+...|+ .+
T Consensus 231 ~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 231 KDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTD 310 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHH
Confidence 01111121110000 00 01111111111 1122222211000 0012222333 35
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHh----CCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 041458 361 LVVKCLDQMFHRRCKPNEGTYNGLAMLCG----VGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLY 436 (568)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 436 (568)
++..+++..+..-...+..++..+..+.. ....+.....++++.........-+|..++..-.+..-+..|..+|.
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence 56666666554433334444444333322 12355556666666655444445668888888888888999999999
Q ss_pred HHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 041458 437 EMTKYGFTP-DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP 515 (568)
Q Consensus 437 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 515 (568)
+..+.+..+ +..+.++++.-+| .++.+-|.++|+.-.+. ..-++.--...++-+...++-..|..+|++.+..++.|
T Consensus 391 kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 391 KAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 999887766 6667788887766 47889999999876643 12244455677888888999999999999999886666
Q ss_pred CH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 516 NE--TTYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 516 ~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
|. .+|..+++-=..-|+...+.++-++....-+
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 54 8899999988899999999999888876665
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.95 E-value=7.2e-06 Score=82.54 Aligned_cols=455 Identities=12% Similarity=0.024 Sum_probs=255.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHH
Q 041458 79 LNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEK 158 (568)
Q Consensus 79 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 158 (568)
...|+..|-+.++..+. =...|..|...|+...+..+|.+.|+.+-+-+. .|...+......|+...+.+.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 55566666555554221 234677777777777788888888888776543 2666777788888888888888777433
Q ss_pred HHhCCCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 041458 159 MEDYGYPTN--TVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKP 236 (568)
Q Consensus 159 ~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (568)
.-+.. +.- ...|....-.|.+.++..+|..-|+......+. |...|..+..+|.+.|++..|.++|.+.... .|
T Consensus 552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 32221 111 112333444566677788888888877765433 7778888888888888888888888887665 33
Q ss_pred CHh-hHHHHHHHHHhcCChHHHHHHHHHhhhC------CCCCChhHHHHHHHHHHcCCCHHHHHHHHHH-------hccC
Q 041458 237 NLV-SYNVLLTGLCKEGRTEEAIRFFRDLPSK------GFEPNVVSYNILLRSLCMEGRWEEANELLAE-------MDGG 302 (568)
Q Consensus 237 ~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-------~~~~ 302 (568)
+.. .---.....+..|.+.+|+..+..+... +..--..++.-+...+...|-...+...++. ....
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 221 1111223346678888888887776543 1111122222222223333332333333322 1111
Q ss_pred CCCcCHhhHHHHHHHH-------------------H----hcCCh---H---HHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 041458 303 DRSPTIVTYNILIGSL-------------------A----YHGKT---D---HALKVLDEMVKGRFRPSAASYNPIIARL 353 (568)
Q Consensus 303 ~~~~~~~~~~~l~~~~-------------------~----~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~~ 353 (568)
....+...|..+-++| . ..+.. + -+.+.+-.-++ ...+..+|..++..|
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHH
Confidence 1111222222222111 1 11111 0 01111111011 112344454444443
Q ss_pred Hh----cC----CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 041458 354 CS----EG----KVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRK 425 (568)
Q Consensus 354 ~~----~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 425 (568)
.+ .+ +...|+..+.+.++.. ..+...|+.+......|++.-|...|-+-....+. ...+|..+...+.+.
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHhhccchhhhhhhhhhhhhhcccc-chhheeccceeEEec
Confidence 33 11 1235666666665442 34566677766666667777777777665554433 456677777778888
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--H--hCCCCCChhhHHHHHHHHHccCChHHH
Q 041458 426 GKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVM--E--EYDYKPDVDNFNALLLGLCKSRRTDLS 501 (568)
Q Consensus 426 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m--~--~~~~~p~~~~~~~li~~~~~~g~~~~a 501 (568)
.+++.|...|...+...+ .|...|......-...|+.-++..+|..- . ..|-.|+..-|-+........|+.++-
T Consensus 864 ~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred ccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 899999999988887532 25666766655566678888888888652 2 234445666666665566667776654
Q ss_pred HHHHHHHHH---------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 502 LEVFQMMIE---------KGQMPNETTYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 502 ~~~~~~m~~---------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
+...+.+.. .+.+.+...|.+......+.+.++.|.+...+++
T Consensus 943 I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 943 INTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444333221 1344466778777777777788777777766653
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.92 E-value=1.3e-07 Score=86.07 Aligned_cols=133 Identities=16% Similarity=0.148 Sum_probs=68.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM----EGLIEEALEIFVVMEEYDYKPDVDNFNA 487 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 487 (568)
.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. ...+.+|.-+|+++.+. ..+++.+.+.
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng 206 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNG 206 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHH
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHH
Confidence 344444555666666666666666666543 222 233333333322 12456666666665542 3345566666
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCC
Q 041458 488 LLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDEL-ELSAEVLKELQLRQVV 549 (568)
Q Consensus 488 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~ 549 (568)
+..++...|++++|.+++++..+.+ +-+..++..++-+....|+. +.+.+++.++....+.
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 6666666666666666666655432 22445555555555555555 4455666666655544
No 97
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.92 E-value=2.1e-05 Score=76.69 Aligned_cols=308 Identities=16% Similarity=0.143 Sum_probs=181.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCC
Q 041458 209 LLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGR 288 (568)
Q Consensus 209 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 288 (568)
.+.+.....++.+|+.+++.+.+... -..-|..+...|...|+++.|.++|.+.- .++--|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 44556677888888888888776622 33456777788888899999998886532 35667888899999
Q ss_pred HHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 041458 289 WEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQ 368 (568)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 368 (568)
|++|.++-++... .......|..-..-.-+.|++.+|.++|-.+.. |+ ..|.+|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHH
Confidence 9999888777643 244555666666667788888888887754432 33 357788888888888877765
Q ss_pred HhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 041458 369 MFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSY 448 (568)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 448 (568)
-.... ...........+...|+..+|..-|-+... |.+-+..|-..+.+++|.++-+. .|-. |..
T Consensus 876 ~h~d~--l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt---egg~-n~~ 940 (1636)
T KOG3616|consen 876 HHGDH--LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EGGA-NAE 940 (1636)
T ss_pred hChhh--hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---cccc-cHH
Confidence 53221 111122224566667888888877765543 55556666666666666554432 1100 111
Q ss_pred -----hH-------------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHH
Q 041458 449 -----TY-------------------SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEV 504 (568)
Q Consensus 449 -----~~-------------------~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 504 (568)
.| ..-++..+..+.++-|.++-+...+.. .......+..-+-..|++++|.+.
T Consensus 941 k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskh 1017 (1636)
T KOG3616|consen 941 KHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKH 1017 (1636)
T ss_pred HHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHh
Confidence 01 111222233444444444443333321 122233444456778899999888
Q ss_pred HHHHHHCCCCCCHHHHHHHHH-----HHHhcC-ChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhh
Q 041458 505 FQMMIEKGQMPNETTYTILVE-----GIAHQD-ELELSAEVLKELQLRQVVSESAVERLVMQYDF 563 (568)
Q Consensus 505 ~~~m~~~g~~p~~~~~~~ll~-----~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 563 (568)
+-+.++.+ .-..||...+- -..+.| ++++|...|- .-.+.....++.+.-|.
T Consensus 1018 yveaikln--tynitwcqavpsrfd~e~ir~gnkpe~av~mfi-----~dndwa~aervae~h~~ 1075 (1636)
T KOG3616|consen 1018 YVEAIKLN--TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFI-----HDNDWAAAERVAEAHCE 1075 (1636)
T ss_pred hHHHhhcc--cccchhhhcccchhhHHHHHcCCChHHHHHHhh-----hcccHHHHHHHHHhhCh
Confidence 88887642 23345543221 233445 5666655442 12355555555555443
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=8.9e-05 Score=73.44 Aligned_cols=165 Identities=14% Similarity=0.168 Sum_probs=101.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHH
Q 041458 108 LCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQS 187 (568)
Q Consensus 108 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 187 (568)
....|.+++|..+|.+..+. ..|=..|-..|.+++|.++-+.-.+. . -..||.....-+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHH
Confidence 35678889999999887763 33344566778888888876543221 1 233555566666666777777
Q ss_pred HHHHHHH----------HHCC---------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 041458 188 LQFLDRL----------IQKG---------LVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGL 248 (568)
Q Consensus 188 ~~~~~~m----------~~~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 248 (568)
++.|++. +... -..|...|.......-..|+.+.|+.+|....+ |-.+++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 7776642 1111 122444455555555567778888877776543 44566666
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 041458 249 CKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 249 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 299 (568)
|-.|+.++|-++-++-. |......|.+.|-..|++.+|...|-+.
T Consensus 949 C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66777777777666533 4455555666677777766666666543
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.87 E-value=5.2e-05 Score=67.34 Aligned_cols=96 Identities=18% Similarity=0.196 Sum_probs=66.6
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH---HHHHHhcCChhhHHHHHHHHHhCCCCCcHHHH-
Q 041458 96 PDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYL---VNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTY- 171 (568)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~- 171 (568)
.++.-..-+...+...|++.+|+.-|....+- |+..|.++ ...|...|+-..|+.-+.+..+. +||-..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH
Confidence 34555556777888888888898888888864 44444444 34677788888888888887773 4554322
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 041458 172 NSLVRGLCMLGNLNQSLQFLDRLIQK 197 (568)
Q Consensus 172 ~~li~~~~~~g~~~~a~~~~~~m~~~ 197 (568)
..-...+.+.|.++.|..=|+.+++.
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQH 135 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhc
Confidence 22344567888888888888888776
No 100
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.87 E-value=0.00015 Score=72.70 Aligned_cols=223 Identities=19% Similarity=0.226 Sum_probs=157.0
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh
Q 041458 74 HRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDL--CKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGY 151 (568)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 151 (568)
...+++..|+.....+++.. ||. .|..++.++ .+.|+.++|..+++....-+.. |..|...+-.+|...+..++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 35688899999999887763 443 344455554 5899999999999888776654 88899999999999999999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC----------HHH
Q 041458 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERG----------VHA 221 (568)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~ 221 (568)
|..+|++..+. -|+......+..+|.+.+++.+-.++--+|-+. .+-+.+.+-++++...+... ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999999875 366778888888999988877655555555443 34456666666666654311 235
Q ss_pred HHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCChHHHHHHHH-HhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 041458 222 AMKLLDDIIAKGGK-PNLVSYNVLLTGLCKEGRTEEAIRFFR-DLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 222 a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 299 (568)
|.+.++.+.+.+.+ -+..-.......+-..|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 66677777766422 122223333445567889999999993 3333323334455566777888889999999888888
Q ss_pred ccCC
Q 041458 300 DGGD 303 (568)
Q Consensus 300 ~~~~ 303 (568)
...+
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8775
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=1.9e-07 Score=85.05 Aligned_cols=122 Identities=15% Similarity=0.142 Sum_probs=70.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH----hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLC----RKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM 459 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 459 (568)
+..+.+.++++.|.+.++.|.+.+ +..+...+..++. ..+.+.+|..+|+++.+. ..+++.+.+.+..++..
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~ 213 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQ 213 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHH
Confidence 344444555555555555544331 1122333333332 223577788888886654 45667777777777888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh-HHHHHHHHHHHH
Q 041458 460 EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRT-DLSLEVFQMMIE 510 (568)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 510 (568)
.|++++|.+++++..+.+.. +..+...++.+....|+. +.+.+++.++..
T Consensus 214 ~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred hCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 88888888888777655443 566666777777777776 556677777765
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=2.8e-05 Score=85.14 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHCCCC--C-C----HhhHHHHHHHHH
Q 041458 115 KKAIKVMEMMVSSGII--P-D----ASSYTYLVNCLC 144 (568)
Q Consensus 115 ~~A~~~~~~~~~~~~~--~-~----~~~~~~li~~~~ 144 (568)
+.+.++++.+.+.|.. + + .+.|+.++.-+.
T Consensus 292 ~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l 328 (903)
T PRK04841 292 ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFL 328 (903)
T ss_pred CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHH
Confidence 3456777777777641 1 1 244666665544
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.85 E-value=2.1e-05 Score=86.05 Aligned_cols=335 Identities=12% Similarity=0.020 Sum_probs=197.4
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC------CCCH--hhHHHHHHHH
Q 041458 142 CLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL------VPNA--FTYSFLLEAA 213 (568)
Q Consensus 142 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------~~~~--~~~~~li~~~ 213 (568)
.....|+++.+..+++.+.......+..........+...|+++++...+......-- .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777666666553211111222333445555677889998888887754310 1111 1112223345
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHhhhC----CC-CCChhHHHHHHHHHH
Q 041458 214 YKERGVHAAMKLLDDIIAKGGKPNL----VSYNVLLTGLCKEGRTEEAIRFFRDLPSK----GF-EPNVVSYNILLRSLC 284 (568)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~l~~~~~ 284 (568)
...|+++.|...+++....-...+. ...+.+...+...|++++|...+++.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 5788999999999887763111121 23455566677889999998888877542 11 111234455666778
Q ss_pred cCCCHHHHHHHHHHhccC----CCC--c-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCC--CcccHHHHHHHH
Q 041458 285 MEGRWEEANELLAEMDGG----DRS--P-TIVTYNILIGSLAYHGKTDHALKVLDEMVKGR--FRP--SAASYNPIIARL 353 (568)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~ 353 (568)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 889999998888775432 211 1 12334455566777799999988888765421 111 122333345567
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC-hhh--H--H--HHHHHHhCCCHHHHHHHHHHHhhCCCCCCh---hhHHHHHHHHH
Q 041458 354 CSEGKVDLVVKCLDQMFHRRCKPN-EGT--Y--N--GLAMLCGVGKVQEAFAIIQSLGNKQNSSPQ---EFYKYVITSLC 423 (568)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~--~--~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~ 423 (568)
...|+++.|...+.+......... ... . . .+..+...|+.+.|...+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 788999999888887754211111 010 1 0 123444578888888887765542211111 11345666777
Q ss_pred hcCChhHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 424 RKGKTYQAFQLLYEMTKY----GFTPD-SYTYSSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 424 ~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
..|+.++|...+++.... |..++ ..+...+..++...|+.++|.+.+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888899998888877642 22222 235566677788889999999888888754
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=6.3e-07 Score=84.75 Aligned_cols=223 Identities=14% Similarity=0.092 Sum_probs=171.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 177 GLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
-+.+.|++.+|.-.|+..++.... +...|..|......+++-..|+..+.+.++.. +.|......|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 456789999999999998887533 77899999989999999999999999998873 3367778888888999999999
Q ss_pred HHHHHHHhhhCCCC--------CChhHHHHHHHHHHcCCCHHHHHHHHHHhc-cCCCCcCHhhHHHHHHHHHhcCChHHH
Q 041458 257 AIRFFRDLPSKGFE--------PNVVSYNILLRSLCMEGRWEEANELLAEMD-GGDRSPTIVTYNILIGSLAYHGKTDHA 327 (568)
Q Consensus 257 A~~~~~~~~~~~~~--------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a 327 (568)
|++.++..+...++ ++...-+. ..+.....+....++|-++. ..+..+|..+...|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999887654211 00000000 12222233445556665554 334347888888899999999999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHh
Q 041458 328 LKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLG 404 (568)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 404 (568)
...|+..+...+. |...||.|...++...+..+|+..|.+.++..+.--...|+..+.+...|.+++|...|-...
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999986543 778999999999999999999999999999877667778888888999999999988887653
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.83 E-value=2e-06 Score=89.32 Aligned_cols=208 Identities=11% Similarity=0.078 Sum_probs=148.1
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC-CCC---CChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhh
Q 041458 235 KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK-GFE---PNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVT 310 (568)
Q Consensus 235 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 310 (568)
+-+...|-..|....+.++.++|.+++++.... ++. --...|.++++.-..-|.-+...++|+++.+. ......
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 345667888888888888888888888887643 111 12346777777766677778888888888765 223567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH--HHHHH
Q 041458 311 YNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG--LAMLC 388 (568)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~ 388 (568)
|..|...|.+.++.++|.++++.|.+. +.-...+|...+..+.+..+-+.|..++.++++.-+.....-+.. +..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 788888888888888888888888875 224667788888888888888888888888887644433333322 55556
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 041458 389 GVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD 446 (568)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 446 (568)
+.|+.+.+..+|+......+. ....|+.+|+.-.++|+.+.+..+|++.+..++.|-
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 677777777777777665444 445677777777777777777777777777665543
No 106
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.83 E-value=1.6e-05 Score=80.13 Aligned_cols=154 Identities=11% Similarity=0.052 Sum_probs=99.2
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCh
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDA--SSYTYLVNCLCKKGNV 149 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~ 149 (568)
.|....+...|.+.|+...+.+ ..+...+......|++..+++.|..+.-..-+.. +.-. ..|....-.|.+.++.
T Consensus 501 iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~ 578 (1238)
T KOG1127|consen 501 IYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAHNL 578 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCccch
Confidence 3444457778888888877764 3477788888888998888988888733322221 1111 1233333456677788
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHH--HHHHHHcCCHHHHHHHHH
Q 041458 150 GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFL--LEAAYKERGVHAAMKLLD 227 (568)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~ 227 (568)
..|+.-|+...+.. |.|...|..+..+|.+.|++..|.++|.+.... .|+. +|... .-.-+..|.+.++...+.
T Consensus 579 h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~ 654 (1238)
T KOG1127|consen 579 HGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALG 654 (1238)
T ss_pred hhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 88888888777653 447778888888888888888888888877654 3332 22222 223345677777777776
Q ss_pred HHHH
Q 041458 228 DIIA 231 (568)
Q Consensus 228 ~~~~ 231 (568)
..+.
T Consensus 655 ~ii~ 658 (1238)
T KOG1127|consen 655 LIIY 658 (1238)
T ss_pred HHHH
Confidence 6544
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=3.7e-06 Score=87.45 Aligned_cols=216 Identities=13% Similarity=0.082 Sum_probs=142.2
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCC---CHhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 041458 86 LERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSS-GIIP---DASSYTYLVNCLCKKGNVGYAMQLVEKMED 161 (568)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 161 (568)
|++.+.. .+.+...|...+......++.+.|++++++++.. ++.- -...|.++++.--.-|.-+...++|+++.+
T Consensus 1447 ferlvrs-sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRS-SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhc-CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 4444443 2345667777777777888888888888877653 1111 123566777666666777777788887776
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHhh
Q 041458 162 YGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGK-PNLVS 240 (568)
Q Consensus 162 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 240 (568)
.. .....|..|...|.+.+.+++|.++++.|.+. +......|...+..+.+.++-+.|..++.+.++.-.+ -....
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 52 23446777788888888888888888888764 2345667777777777777777787777777665111 02223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCc
Q 041458 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSP 306 (568)
Q Consensus 241 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 306 (568)
....+..-.+.|+.+.+..+|+.....-++ -...|+..++.-.+.|+.+.++.+|+++...++.+
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 334444556777777777777777655322 45677777777777777777777777777666544
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=6.8e-07 Score=84.55 Aligned_cols=217 Identities=16% Similarity=0.083 Sum_probs=109.2
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHH
Q 041458 74 HRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAM 153 (568)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 153 (568)
.+.|++.+|.-.|+..++.. +-+...|-.|......+++-..|+..+.+..+.... |..+...|.-.|...|.-..|.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 45666666666666665553 235666666666666666666666666666655322 4555556666666666666666
Q ss_pred HHHHHHHhCCCCCcHHHHHHHH---------HHHHhcCChHHHHHHHHHHH-HCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 041458 154 QLVEKMEDYGYPTNTVTYNSLV---------RGLCMLGNLNQSLQFLDRLI-QKGLVPNAFTYSFLLEAAYKERGVHAAM 223 (568)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~li---------~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~~~~~~a~ 223 (568)
+.++.-....++ ..|..-. ..+.....+....++|-++. +.+..+|+.+...|--.|.-.|++++|.
T Consensus 374 ~~L~~Wi~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 374 KMLDKWIRNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 666555432100 0000000 01111111223333333332 2233345555555555555556666666
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHcCCCHHHHHHHHHH
Q 041458 224 KLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPN-VVSYNILLRSLCMEGRWEEANELLAE 298 (568)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 298 (568)
..|+..+... +-|...||-|...++...+.++|+..|++..+. .|+ +.+...|.-.|...|.+++|.+.|-.
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 6665555542 224555666655555555566666666555543 232 22333344455555666555555544
No 109
>PLN02789 farnesyltranstransferase
Probab=98.81 E-value=1e-05 Score=74.89 Aligned_cols=226 Identities=8% Similarity=-0.008 Sum_probs=131.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCC--HHHH
Q 041458 320 YHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEG-KVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGK--VQEA 396 (568)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a 396 (568)
..+..++|+.+..++++.++. +..+|+.--..+...| ++++++..++++.+..++.-.........+.+.|. .+++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 344555555555555544221 2233433333444444 34566666666655544333332222222223333 2455
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CC----HHHHHHH
Q 041458 397 FAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCME---GL----IEEALEI 469 (568)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~a~~~ 469 (568)
...++.+.+.++. +...|+.....+...|+++++++.++++++.++. |...|+.....+.+. |. .++..++
T Consensus 128 l~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 6666666655443 6677887777777888888888888888876544 555666665555443 22 2456677
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------------
Q 041458 470 FVVMEEYDYKPDVDNFNALLLGLCKS----RRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQD-------------- 531 (568)
Q Consensus 470 ~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-------------- 531 (568)
..++....+. |...|+.+...+... ++..+|.+.+.+..+.+ ..+...+..|++.|....
T Consensus 206 ~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 206 TIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 7666665544 777787777777663 33456777777766542 336677777888776532
Q ss_pred ----ChhHHHHHHHHHHHcCCCC
Q 041458 532 ----ELELSAEVLKELQLRQVVS 550 (568)
Q Consensus 532 ----~~~~a~~~~~~~~~~~~~~ 550 (568)
..++|.++++.+.+.++..
T Consensus 284 ~~~~~~~~a~~~~~~l~~~d~ir 306 (320)
T PLN02789 284 EELSDSTLAQAVCSELEVADPMR 306 (320)
T ss_pred cccccHHHHHHHHHHHHhhCcHH
Confidence 2367888888886555543
No 110
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=7e-05 Score=66.54 Aligned_cols=316 Identities=15% Similarity=0.124 Sum_probs=165.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH---HHHHHcCCHHHHHHHHHHHHHcCCCCCHhhH-H
Q 041458 167 NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLL---EAAYKERGVHAAMKLLDDIIAKGGKPNLVSY-N 242 (568)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~ 242 (568)
++.-.--+...+...|++.+|+.-|...++. |+..|.++. ..|...|+-..|+.-+.+.++. +||-..- -
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 4444555677777788888888888777654 444454443 4566777777777777777765 5554321 1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcC
Q 041458 243 VLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHG 322 (568)
Q Consensus 243 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (568)
.-...+.+.|.+++|..=|+.+.+.. |+..+ ...++.+.-..++- ......+..+...|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~----------------~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEH----------------WVLVQQLKSASGSG 169 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHH----------------HHHHHHHHHHhcCC
Confidence 12345567888888888888777652 22111 01111111111110 11122233344445
Q ss_pred ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHH
Q 041458 323 KTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQS 402 (568)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 402 (568)
+...|++....+++..+ .|...+..-..+|...|++..|+.-++...+.........|..-..+...|+.+.++...++
T Consensus 170 D~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred chhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 55555555555554321 24444444445555555555555555554444433444444444445555555555555555
Q ss_pred HhhCCCCCCh--hhHHHH---------HHHHHhcCChhHHHHHHHHHHHCCCCCChhhH---HHHHHHHHhcCCHHHHHH
Q 041458 403 LGNKQNSSPQ--EFYKYV---------ITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTY---SSLIRGLCMEGLIEEALE 468 (568)
Q Consensus 403 ~~~~~~~~~~--~~~~~l---------i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~ 468 (568)
..+.++.-.. ..|..+ +......+++.++++..+...+.......+.+ ..+-.++...|++.+|++
T Consensus 249 CLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 249 CLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred HHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 4443221100 001100 12233456666666666666554322122222 233344555677777777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 469 IFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 469 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
.-.+..+.... |+.++.--..+|.-...++.|+.-|+.+.+.
T Consensus 329 qC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 329 QCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77776654322 4667777777777777777777777777764
No 111
>PLN02789 farnesyltranstransferase
Probab=98.77 E-value=4.4e-06 Score=77.26 Aligned_cols=209 Identities=11% Similarity=0.014 Sum_probs=158.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh--
Q 041458 352 RLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVG-KVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKT-- 428 (568)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-- 428 (568)
.+...++.++|+.+..+++...+..-.....-...+...| .+++++..++++.+.++. +..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 3445677889999999998774433322222234445556 679999999999887665 556688776666677763
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc---CCh----HHH
Q 041458 429 YQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKS---RRT----DLS 501 (568)
Q Consensus 429 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~----~~a 501 (568)
++++.+++++++...+ |..+|+....++.+.|+++++++.++++.+.++. |...|+.....+.+. |.. ++.
T Consensus 125 ~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 6788999899886543 6789999999999999999999999999987766 788888877766554 222 467
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhc
Q 041458 502 LEVFQMMIEKGQMPNETTYTILVEGIAHQ----DELELSAEVLKELQLRQVVSESAVERLVMQYDFE 564 (568)
Q Consensus 502 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 564 (568)
.+..++++.. .+-|...|..+...+... ++..+|.+.+.+....++.+..++..|+..|+..
T Consensus 203 l~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 203 LKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 7888788775 244778898888888773 3456799999999999999999999999999863
No 112
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.77 E-value=0.00018 Score=70.45 Aligned_cols=192 Identities=15% Similarity=0.156 Sum_probs=103.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHH
Q 041458 316 GSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQE 395 (568)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (568)
.+.....++.+|+.+++.+..... -..-|..+.+.|+..|+++.|.++|.+.- .+-.++.+|.+.|+++.
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHH
Confidence 344455566666666666655432 22334555566777777777776665431 12233667777777777
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041458 396 AFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEE 475 (568)
Q Consensus 396 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 475 (568)
|.++-.+... +......|..-..-+-++|++.+|.+++-... .|+ .-|..|-+.|..+..+++.++---
T Consensus 810 a~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 7666554432 22233445444455556666666666654332 233 234556666666666555543221
Q ss_pred CCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 041458 476 YDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVL 540 (568)
Q Consensus 476 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 540 (568)
..-..+...+..-|-..|+++.|...|-+..+ |..-+..|..++.|++|.++.
T Consensus 879 ---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 879 ---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred ---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 11223444555566667777777766654432 344455566666666655544
No 113
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.75 E-value=0.00022 Score=67.51 Aligned_cols=422 Identities=9% Similarity=0.022 Sum_probs=232.4
Q ss_pred hhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCChhh
Q 041458 73 RHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK-KGNVGY 151 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~ 151 (568)
.++....+++...++++... .+-....|..-|..-.+.++++....+|.+.... ..+...|...+..-.+ .|....
T Consensus 29 e~qt~~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~ 105 (656)
T KOG1914|consen 29 EAQTQPIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSYVRETKGKLFG 105 (656)
T ss_pred HHccCCHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHHHHHHccCcch
Confidence 45566999999999999876 4557788999999999999999999999998875 3467788877764433 333333
Q ss_pred H----HHHHHHHH-hCCCCC-cHHHHHHHHHHH---------HhcCChHHHHHHHHHHHHCCCCCCHhhHH------HHH
Q 041458 152 A----MQLVEKME-DYGYPT-NTVTYNSLVRGL---------CMLGNLNQSLQFLDRLIQKGLVPNAFTYS------FLL 210 (568)
Q Consensus 152 a----~~~~~~~~-~~~~~~-~~~~~~~li~~~---------~~~g~~~~a~~~~~~m~~~~~~~~~~~~~------~li 210 (568)
+ .+.|+-.. +.|+.+ .-..|+..+..+ ....+.+...+++.++....+..=...|+ .=|
T Consensus 106 ~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~I 185 (656)
T KOG1914|consen 106 YREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEI 185 (656)
T ss_pred HHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHH
Confidence 2 23344333 344333 233466655543 33446677888888887542221112222 111
Q ss_pred HHH-------HHcCCHHHHHHHHHHHHH--cCCCCCHh---------------hHHHHHHHHHhcCCh--------HHHH
Q 041458 211 EAA-------YKERGVHAAMKLLDDIIA--KGGKPNLV---------------SYNVLLTGLCKEGRT--------EEAI 258 (568)
Q Consensus 211 ~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~ll~~~~~~g~~--------~~A~ 258 (568)
+.. -+...+..|.++++++.. +|...+.. .|-.+|..--.++-- ....
T Consensus 186 N~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~ 265 (656)
T KOG1914|consen 186 NIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVM 265 (656)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHH
Confidence 111 123445667777776643 23321111 133333322111110 0001
Q ss_pred HHHHHh-hhCCCCCChhHHH-----HHHHHHHcCCC-------HHHHHHHHHHhccCCCCcCHhhHHHHHHHHH---hcC
Q 041458 259 RFFRDL-PSKGFEPNVVSYN-----ILLRSLCMEGR-------WEEANELLAEMDGGDRSPTIVTYNILIGSLA---YHG 322 (568)
Q Consensus 259 ~~~~~~-~~~~~~p~~~~~~-----~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g 322 (568)
-.+++. .-.+..|++.... ..-+.+...|+ -+++..+++.....-...+..+|..+.+.-- +..
T Consensus 266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n 345 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDN 345 (656)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc
Confidence 111111 1112222221110 01112222333 3445555555443322223333333332111 112
Q ss_pred ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHhCCCHHHHHHHHH
Q 041458 323 KTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKP-NEGTYNGLAMLCGVGKVQEAFAIIQ 401 (568)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~ 401 (568)
+.+....++++++..-..--..+|..+++...+..-+..|+.+|.++.+.+..+ .+....++.-|.-.++.+-|..+|+
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe 425 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE 425 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence 345555666666554222233466777777777777888888888888777666 5555555666666778888888887
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-
Q 041458 402 SLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD--SYTYSSLIRGLCMEGLIEEALEIFVVMEEY-D- 477 (568)
Q Consensus 402 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~- 477 (568)
.-..+... +...-...+.-+...++-..|..+|++....++.|+ ...|..++.--+.-|++..+.++-+++... .
T Consensus 426 LGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 426 LGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 65544333 334445566777777888888888888877655554 357888888778888888888777766532 1
Q ss_pred -CCCChhhHHHHHHHHHccCCh
Q 041458 478 -YKPDVDNFNALLLGLCKSRRT 498 (568)
Q Consensus 478 -~~p~~~~~~~li~~~~~~g~~ 498 (568)
..+....-..+++-|.-.+..
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccc
Confidence 222223334445555544443
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=3.3e-06 Score=82.19 Aligned_cols=213 Identities=10% Similarity=0.068 Sum_probs=134.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 041458 277 NILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSE 356 (568)
Q Consensus 277 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 356 (568)
..+...+.+.|-..+|..+++++. .|..++.+|...|+..+|..+..+..++ +|+...|..+.+..-..
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 455666777777777777777653 4666777777777777777777766663 46776777766666665
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 041458 357 GKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLY 436 (568)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 436 (568)
.-+++|.++.++.... ..........+.++++++.+.|+.-.+.++- -..+|-.+..+..+.++++.|.+.|.
T Consensus 471 s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHH
Confidence 5666666666654322 0000011122356677777777665544332 34556666666667777777777777
Q ss_pred HHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 437 EMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 437 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
..... .|| ...||.+-.+|.+.|+-.+|...+.+..+.+.. +...|...+....+.|.+++|++.++++.+
T Consensus 544 rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 544 RCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 66653 444 456777777777777777777777777766533 556666666667777777777777776665
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=4.1e-08 Score=56.48 Aligned_cols=31 Identities=42% Similarity=0.978 Sum_probs=12.6
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 041458 234 GKPNLVSYNVLLTGLCKEGRTEEAIRFFRDL 264 (568)
Q Consensus 234 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 264 (568)
+.||..+|+++|.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3344444444444444444444444444333
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=8.5e-06 Score=79.46 Aligned_cols=233 Identities=15% Similarity=0.092 Sum_probs=182.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHH
Q 041458 240 SYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLA 319 (568)
Q Consensus 240 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (568)
.-..+...+...|-..+|..+|++.. .|..++.+|+..|+..+|..+..+-.+. +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456778889999999999998764 5777899999999999999999888873 889999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHH
Q 041458 320 YHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAI 399 (568)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 399 (568)
...-+++|.+++++.... .-..+.......+++.++.+.|+...+..+---...|.......+.+++..|.+.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 989999999999876542 1112222234478999999999988877655555556667777889999999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C
Q 041458 400 IQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYD-Y 478 (568)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~ 478 (568)
|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++.+.. .
T Consensus 542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 9988776443 56789999999999999999999999999987 4456677788888899999999999999886321 1
Q ss_pred CCChhhHHHHHHHH
Q 041458 479 KPDVDNFNALLLGL 492 (568)
Q Consensus 479 ~p~~~~~~~li~~~ 492 (568)
.-|..+...++...
T Consensus 620 ~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 620 YKDDEVLLIIVRTV 633 (777)
T ss_pred cccchhhHHHHHHH
Confidence 11444544444443
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.66 E-value=3.8e-08 Score=56.61 Aligned_cols=32 Identities=31% Similarity=0.817 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041458 163 GYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRL 194 (568)
Q Consensus 163 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 194 (568)
|++||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.60 E-value=8.5e-06 Score=70.10 Aligned_cols=125 Identities=12% Similarity=0.072 Sum_probs=83.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HccCC--hHHH
Q 041458 425 KGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL-CKSRR--TDLS 501 (568)
Q Consensus 425 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~a 501 (568)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666666543 335667777777777777777777777777766544 666666666653 55565 4777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHH
Q 041458 502 LEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 502 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 552 (568)
.+++++..+.+ +-+...+..+...+...|++++|...++++.+..+.+++
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 77777777752 335666777777777777777777777777777766443
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.57 E-value=8.6e-06 Score=70.08 Aligned_cols=155 Identities=10% Similarity=0.046 Sum_probs=114.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 041458 351 ARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQ 430 (568)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 430 (568)
..|...|+++.+......+... . ..+...++.+++...++.....++. +...|..+...|...|++++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~----~-------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADP----L-------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCc----c-------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 4567777777654443222111 0 0111245667777777777666554 77889999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHH-HhcCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 041458 431 AFQLLYEMTKYGFTPDSYTYSSLIRGL-CMEGL--IEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQM 507 (568)
Q Consensus 431 A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 507 (568)
|...|++..+.... +...+..+..++ ...|+ .++|.+++++..+.+.. +...+..+...+...|++++|+..|++
T Consensus 92 A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999986432 677788888764 67777 59999999999987666 788999999999999999999999999
Q ss_pred HHHCCCCCCHHHH
Q 041458 508 MIEKGQMPNETTY 520 (568)
Q Consensus 508 m~~~g~~p~~~~~ 520 (568)
+.+. .+|+..-+
T Consensus 170 aL~l-~~~~~~r~ 181 (198)
T PRK10370 170 VLDL-NSPRVNRT 181 (198)
T ss_pred HHhh-CCCCccHH
Confidence 9986 35554333
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.55 E-value=1.9e-05 Score=67.67 Aligned_cols=156 Identities=13% Similarity=0.071 Sum_probs=112.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 463 (568)
-..+...|+-+....+........+. |.......+....+.|++.+|...|.+..... ++|..+|+.+.-+|.+.|+.
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccCh
Confidence 34444455555555555554443322 55556667788888888888888888887653 56788888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 464 EEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 464 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
++|..-|.+..+..+. +....+.+.-.|.-.|+.+.|..++......+ .-|..+-..+..+....|++++|+.+...-
T Consensus 151 ~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 151 DEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 8888888888876444 56677778888888888888888888887653 336677777777888888888887766543
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=8e-06 Score=66.38 Aligned_cols=106 Identities=10% Similarity=-0.099 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041458 450 YSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH 529 (568)
Q Consensus 450 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 529 (568)
+..+..++...|++++|...|+......+. +...|..+..++.+.|++++|...|++....+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 444566666777777777777776655433 56666777777777777777777777777642 3356666666667777
Q ss_pred cCChhHHHHHHHHHHHcCCCCHHHHHHH
Q 041458 530 QDELELSAEVLKELQLRQVVSESAVERL 557 (568)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l 557 (568)
.|+.++|...+++.++..+.++......
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 7777777777777777776655554443
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00019 Score=61.69 Aligned_cols=125 Identities=17% Similarity=0.124 Sum_probs=71.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 041458 420 TSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM----EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKS 495 (568)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 495 (568)
..+.+..+.+-|.+.+++|.+- .+..|.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHh
Confidence 3445556666666666666642 144555555555543 23466666666666642 345666666666666666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHcCCC
Q 041458 496 RRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELEL-SAEVLKELQLRQVV 549 (568)
Q Consensus 496 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~ 549 (568)
|++++|..++++...+. ..++.++..++-.-...|...+ ..+.+.++....+.
T Consensus 221 ~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred cCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 77777777777766652 3355555555555555554433 34556666555554
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.53 E-value=2.1e-05 Score=70.71 Aligned_cols=187 Identities=14% Similarity=0.085 Sum_probs=115.6
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChh--hHH
Q 041458 342 SAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPN---EGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQE--FYK 416 (568)
Q Consensus 342 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ 416 (568)
....+......+...|+++.|...++++....+... ...+.....+...|++++|...++++.+..+..... .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344566666777888888888888888877643221 122333566777778888888887777655433322 233
Q ss_pred HHHHHHHhc--------CChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 041458 417 YVITSLCRK--------GKTYQAFQLLYEMTKYGFTPDSY-TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNA 487 (568)
Q Consensus 417 ~li~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 487 (568)
.+..++... |+.++|.+.++++.+. .|+.. .+..+..... ... .. ......
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence 344444433 5667777777777654 33321 2211111100 000 00 011124
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 488 LLLGLCKSRRTDLSLEVFQMMIEKGQ-MP-NETTYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 488 li~~~~~~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
+...|.+.|++++|...+++..+..- .| ....+..+..++.+.|++++|..+++.+....+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 56678899999999999999987521 12 357888999999999999999999988876654
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.52 E-value=4.6e-05 Score=65.45 Aligned_cols=159 Identities=14% Similarity=0.129 Sum_probs=97.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 041458 137 TYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKE 216 (568)
Q Consensus 137 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 216 (568)
..+-..+...|+-+....+....... .+.+....+.++....+.|++..|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 34444555566666666655554332 23345555556667777777777777777766542 45666777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHH
Q 041458 217 RGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELL 296 (568)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 296 (568)
|+++.|..-|.+..+... -+....|.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 777777777776666522 24455666666666677777777777666555332 4555555666666777777777665
Q ss_pred HHh
Q 041458 297 AEM 299 (568)
Q Consensus 297 ~~~ 299 (568)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.00017 Score=62.07 Aligned_cols=250 Identities=15% Similarity=0.107 Sum_probs=137.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChH
Q 041458 106 YDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLN 185 (568)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 185 (568)
+-+.-.|++..++..-+...... -+...-..+-++|...|.+..... +++... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 34444566666655554443321 234444445556666665443322 222211 233333433333333334433
Q ss_pred HHH-HHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 041458 186 QSL-QFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDL 264 (568)
Q Consensus 186 ~a~-~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 264 (568)
.-+ ++.+.+.......+......-...|+..+++++|++..+... +......=+.++.+..+++-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 233333333233233333334456777888888887776622 2233333344556777788888888888
Q ss_pred hhCCCCCChhHHHHHHHHHHc----CCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 041458 265 PSKGFEPNVVSYNILLRSLCM----EGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFR 340 (568)
Q Consensus 265 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (568)
.+.. +..|.+.|..++.+ .+++.+|.-+|++|.+. .+|+..+.+....++...|++++|..+++..+.+...
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 7652 45566666666544 35677888888888654 3677777888888888888888888888888776544
Q ss_pred CCcccHHHHHHHHHhcCCH-HHHHHHHHHHhhC
Q 041458 341 PSAASYNPIIARLCSEGKV-DLVVKCLDQMFHR 372 (568)
Q Consensus 341 ~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~ 372 (568)
++.+...++-.-...|.. +...+.+.++...
T Consensus 240 -dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 -DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred -CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 444554444444444444 3344555555544
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.50 E-value=5.7e-05 Score=78.15 Aligned_cols=58 Identities=12% Similarity=-0.016 Sum_probs=31.8
Q ss_pred ChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHH
Q 041458 272 NVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKV 330 (568)
Q Consensus 272 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 330 (568)
+...+..|+..|...+++++|.++.+...+.. +-....|..+...+.+.++..++..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv 87 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL 87 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh
Confidence 34556666777767777777777776554442 22233344444455555555554443
No 127
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.50 E-value=2.3e-05 Score=70.42 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=34.0
Q ss_pred HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcH---HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 041458 133 ASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNT---VTYNSLVRGLCMLGNLNQSLQFLDRLIQK 197 (568)
Q Consensus 133 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 197 (568)
...+..+...+...|+++.|...|+++.... |.+. .++..+..++.+.|++++|...++++.+.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3445555555556666666666666555432 1111 34455555555666666666666665543
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=7e-05 Score=76.73 Aligned_cols=134 Identities=12% Similarity=0.063 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLL 490 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 490 (568)
...+..|.....+.|..++|+.+++...+. .|+ ......++.++.+.+++++|....++.....+. +......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 344444555555555555555555555543 333 234444555555555555555555555544333 4444555555
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
++.+.|++++|..+|+++... .+.+..++..+..++...|+.++|...|++.++....
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 555555555555555555542 1223455555555555555555555555555544444
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.44 E-value=0.00012 Score=75.12 Aligned_cols=135 Identities=12% Similarity=-0.020 Sum_probs=93.4
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 041458 340 RPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVI 419 (568)
Q Consensus 340 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 419 (568)
..+...+..|.....+.|.+++|..+++...+..+.......+....+.+.+++++|...+++.....+. +......+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 3356677777777788888888888888887775444444444466777777777777777777766544 445566666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 420 TSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
.++.+.|++++|..+|++....+ .-+..++..+..++...|+.++|...|+...+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777777632 123566777777777777777777777777643
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.44 E-value=2.3e-05 Score=63.64 Aligned_cols=106 Identities=12% Similarity=-0.084 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLC 493 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 493 (568)
.+......+...|++++|...|+...... +.+...|..+..++...|++++|...|+........ +...+..+..++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 35556778889999999999999988764 236778889999999999999999999999987554 7888999999999
Q ss_pred ccCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 041458 494 KSRRTDLSLEVFQMMIEKGQMPN-ETTYTIL 523 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l 523 (568)
..|++++|.+.|+..++. .|+ ...|...
T Consensus 104 ~~g~~~eAi~~~~~Al~~--~p~~~~~~~~~ 132 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKM--SYADASWSEIR 132 (144)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 999999999999999884 454 4444333
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.39 E-value=0.00014 Score=75.31 Aligned_cols=215 Identities=14% Similarity=0.077 Sum_probs=121.1
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCChhhHHHH------------------H
Q 041458 96 PDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDAS-SYTYLVNCLCKKGNVGYAMQL------------------V 156 (568)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~------------------~ 156 (568)
.+...+..|+..+...+++++|.++.+...+.. |+.. .|-.+...+.+.++.+++.-+ .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHH
Confidence 345566666666666677777777666555542 3322 222222244444444444333 1
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 041458 157 EKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKP 236 (568)
Q Consensus 157 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (568)
..|.+. .-+..++..+..+|-+.|+.++|.++++++++.. .-|+.+.|.+...|... ++++|.+++.+.+..-+
T Consensus 107 ~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i-- 180 (906)
T PRK14720 107 DKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI-- 180 (906)
T ss_pred HHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--
Confidence 122221 1233566777778888888888888888888776 33777778888777777 88888888777665411
Q ss_pred CHhhHHHHHHH---H--HhcCChHHHHHHHHHhhhC-CCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhh
Q 041458 237 NLVSYNVLLTG---L--CKEGRTEEAIRFFRDLPSK-GFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVT 310 (568)
Q Consensus 237 ~~~~~~~ll~~---~--~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 310 (568)
+..-|+.+... + ....+++.-.++.+.+... |..--+.++..+-..|-..++++++..+++.+.+.. +-|...
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a 259 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKA 259 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-Ccchhh
Confidence 11111111110 0 1122233333333333322 222234455555667777888888888888888765 345666
Q ss_pred HHHHHHHHH
Q 041458 311 YNILIGSLA 319 (568)
Q Consensus 311 ~~~l~~~~~ 319 (568)
..-++.+|.
T Consensus 260 ~~~l~~~y~ 268 (906)
T PRK14720 260 REELIRFYK 268 (906)
T ss_pred HHHHHHHHH
Confidence 666776665
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=0.00015 Score=68.00 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=57.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH--HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 041458 352 RLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG--LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTY 429 (568)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 429 (568)
.+...|+++.|++.+..++.. .|+...+.. ...+.+.++.++|.+.++.+....+.. ...+-.+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChH
Confidence 344556666666666665554 233333332 445555555555555555555543332 333444455555555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 041458 430 QAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALE 468 (568)
Q Consensus 430 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 468 (568)
+|+.+++...... +-|+..|..|..+|...|+..++..
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 5555555554432 2345555555555555555544443
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.00031 Score=60.00 Aligned_cols=156 Identities=20% Similarity=0.176 Sum_probs=70.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 041458 352 RLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQA 431 (568)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 431 (568)
+....|+.+.|...++++...-+....+.---...+-..|++++|.++++.+.+.++. |.+++---+...-..|+.-+|
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHH
Confidence 3344445555555555544433111111111133334445555555555555544422 334444334444444555555
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC---ChHHHHHHHHHH
Q 041458 432 FQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSR---RTDLSLEVFQMM 508 (568)
Q Consensus 432 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m 508 (568)
++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-..+. ++..+..+.+.+.-.| +..-+.+++.+.
T Consensus 140 Ik~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 140 IKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5555555443 3445555555555555555555555555555533211 3333334444332222 344455555555
Q ss_pred HH
Q 041458 509 IE 510 (568)
Q Consensus 509 ~~ 510 (568)
++
T Consensus 218 lk 219 (289)
T KOG3060|consen 218 LK 219 (289)
T ss_pred HH
Confidence 55
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.34 E-value=0.005 Score=62.35 Aligned_cols=449 Identities=14% Similarity=0.097 Sum_probs=250.9
Q ss_pred hhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhH
Q 041458 73 RHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYA 152 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 152 (568)
..|.|+.++|..+++.....+.. |..+...+-..|.+.++.++|..+|+.+... .|+......+..+|.+.+++.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999887665444 8888889999999999999999999999987 46777788888899998888765
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHHcCCHHH
Q 041458 153 MQLVEKMEDYGYPTNTVTYNSLVRGLCMLGN----------LNQSLQFLDRLIQKG-LVPNAFTYSFLLEAAYKERGVHA 221 (568)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~ 221 (568)
.+.--++-+ .+|.+...+=++++.+.+.-. ..-|.+.++.+.+.+ ..-+..-...-...+...|.+++
T Consensus 130 Qkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 554444444 255567776677777665421 234556666666553 22222222333345567888999
Q ss_pred HHHHHH-HHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHH----------------HH
Q 041458 222 AMKLLD-DIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRS----------------LC 284 (568)
Q Consensus 222 a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~----------------~~ 284 (568)
|..++. ...+.-...+...-+--+..+...+++.+..++-.++..+|.. | |...++. +.
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s 284 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHS 284 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhh
Confidence 999984 4444433445555566677888899999999999888887543 2 3332221 12
Q ss_pred cCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 041458 285 MEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVK 364 (568)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 364 (568)
..+..+...+...+.......-....+--+..-+..-|+.+++...|-+-. | +-..|..=+..|...=..+.-..
T Consensus 285 ~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf--g---~kpcc~~Dl~~yl~~l~~~q~~~ 359 (932)
T KOG2053|consen 285 LSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF--G---DKPCCAIDLNHYLGHLNIDQLKS 359 (932)
T ss_pred hhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh--C---CCcHhHhhHHHhhccCCHHHHHH
Confidence 223444444444444433211112222223333345588888765543322 1 22233333444444434444444
Q ss_pred HHHHHhhCCCCCC--hh----hHHHHHHHHhCC-----CHHHHHHHHHHHh---hCC------CCCCh---------hhH
Q 041458 365 CLDQMFHRRCKPN--EG----TYNGLAMLCGVG-----KVQEAFAIIQSLG---NKQ------NSSPQ---------EFY 415 (568)
Q Consensus 365 ~~~~~~~~~~~~~--~~----~~~~~~~~~~~~-----~~~~a~~~~~~~~---~~~------~~~~~---------~~~ 415 (568)
++........... .. +...+......| ..+.-...+++.. +.+ ..|.. -+-
T Consensus 360 l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav 439 (932)
T KOG2053|consen 360 LMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAV 439 (932)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHH
Confidence 4444433211110 00 000111111112 1222222222221 111 11121 134
Q ss_pred HHHHHHHHhcCChh---HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 416 KYVITSLCRKGKTY---QAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 416 ~~li~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
+.+++.+-+.++.. +|+-+++...... +-|..+-..+|..|+-.|-+..|.++|..+.-..+..|...|.. ...+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~ 517 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRA 517 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHH
Confidence 56777888877765 4555555544432 22445556788889888999999999988865555545444432 2344
Q ss_pred HccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 041458 493 CKSRRTDLSLEVFQMMIEKGQMPN-ETTYTILVEGIAHQDELELSAE 538 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~ 538 (568)
.-.|++..+...++...+. ...+ ..+-..+..|| +.|.+.+..+
T Consensus 518 ~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~e 562 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPE 562 (932)
T ss_pred HhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHH
Confidence 5567777777777666542 1111 12223333344 4566555443
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.31 E-value=3.6e-05 Score=62.19 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI 527 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 527 (568)
.....+...+...|++++|.+.|+.+...+.. +...|..+...+.+.|++++|...+++..+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 34555666666777777777777776654433 56666677777777777777777777766642 33556666666677
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCHH
Q 041458 528 AHQDELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~~~~~~ 552 (568)
...|++++|.+.+++..+.++.+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 96 LALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhccccch
Confidence 7777777777777777777766444
No 136
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=0.0062 Score=59.80 Aligned_cols=205 Identities=11% Similarity=0.075 Sum_probs=131.8
Q ss_pred CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHH----------HHHHhcCChHHHHHHHHHHHHCCC
Q 041458 130 IPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLV----------RGLCMLGNLNQSLQFLDRLIQKGL 199 (568)
Q Consensus 130 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li----------~~~~~~g~~~~a~~~~~~m~~~~~ 199 (568)
.|.+..|..+.....+.-.++.|...|-+.... +....-..|- ..-+--|++++|.++|-+|-.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr-- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR-- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh--
Confidence 367888988888777777788887777665432 1221111111 1112248889999988877544
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHH
Q 041458 200 VPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAK-GGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNI 278 (568)
Q Consensus 200 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 278 (568)
...|..+.+.|++-.+.++++.--.. ...--...|+.+...+.....+++|.+.|..-.. ...
T Consensus 764 -------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~ 827 (1189)
T KOG2041|consen 764 -------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TEN 827 (1189)
T ss_pred -------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHh
Confidence 23456677788887776665431100 0001135688888888888899999998876432 133
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 041458 279 LLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGK 358 (568)
Q Consensus 279 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 358 (568)
.+.++.+..++++-+.+.+.+. .|....-.+.+++...|.-++|.+.|-+.-. | .+.+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHH
Confidence 6777777778887777766654 3455667788888888988888877644321 1 345677888888
Q ss_pred HHHHHHHHHHH
Q 041458 359 VDLVVKCLDQM 369 (568)
Q Consensus 359 ~~~a~~~~~~~ 369 (568)
+.+|.++-.+.
T Consensus 894 W~~avelaq~~ 904 (1189)
T KOG2041|consen 894 WGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHhc
Confidence 88887765543
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.23 E-value=6.5e-05 Score=60.70 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
.....+...+...|+.++|.+.|+.....+ +.+...+..+...+...|++++|..+++...+.+.. +...+..+...|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 445556677778888888888888887754 335677788888888889999999988888776533 667777788888
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 041458 493 CKSRRTDLSLEVFQMMIEKGQMPNETTYT 521 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 521 (568)
...|++++|.+.+++..+. .|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 8899999999999888874 45544433
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=0.00011 Score=69.54 Aligned_cols=131 Identities=17% Similarity=0.152 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK 494 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 494 (568)
...++..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++++..+.... +...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 4445555666788888888888888753 44 3445777777788888888888888765333 67777777778888
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHH
Q 041458 495 SRRTDLSLEVFQMMIEKGQMP-NETTYTILVEGIAHQDELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 552 (568)
.++.+.|.++.+++++. .| +..+|..|..+|...|+++.|...++.+-.....+..
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~ 303 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKY 303 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccch
Confidence 88889999999888874 45 5578888889999999999988888877655444433
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.0011 Score=56.82 Aligned_cols=197 Identities=14% Similarity=0.063 Sum_probs=146.8
Q ss_pred hcCCHHHHHHHHHHHhhC---C-CCCChhhHHH--HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 041458 355 SEGKVDLVVKCLDQMFHR---R-CKPNEGTYNG--LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKT 428 (568)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~---~-~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 428 (568)
...+.++..+++.+++.. + ..++..+..- ......+|+.+.|...++.+..+.+.... .-..-..-+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~R-V~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKR-VGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHhhch
Confidence 456788999999888753 3 3444444433 56677789999999999999887644322 222222335567999
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 041458 429 YQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMM 508 (568)
Q Consensus 429 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 508 (568)
++|.++++...+.. +.|.+++-.-+-..-..|+--+|++-+....+. +..|.+.|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999875 446677776666677778888998888887764 4559999999999999999999999999999
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCHHHHHH
Q 041458 509 IEKGQMP-NETTYTILVEGIAHQD---ELELSAEVLKELQLRQVVSESAVER 556 (568)
Q Consensus 509 ~~~g~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~ 556 (568)
+-. .| ++..+..+.+.+...| +.+.+++++.+.++..+.+.....-
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 874 55 6677777777766554 5677999999999998865544433
No 140
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=0.00027 Score=66.28 Aligned_cols=151 Identities=18% Similarity=0.140 Sum_probs=116.5
Q ss_pred ChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 041458 377 NEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD-SYTYSSLIR 455 (568)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 455 (568)
....|.....+...|.+++|+..++.+....+. |...+......+.+.++..+|.+.++++... .|+ ......+..
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~ 382 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQ 382 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHH
Confidence 344455567778889999999999988776553 6677777788888999999999999988875 555 556677888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 041458 456 GLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELEL 535 (568)
Q Consensus 456 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 535 (568)
++.+.|++.+|..+++........ |+..|..|..+|...|+..++..-..+ .+.-.|+++.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~ 443 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQ 443 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHH
Confidence 899999999999999888866544 888899999999999988877665544 3556778888
Q ss_pred HHHHHHHHHHcCCC
Q 041458 536 SAEVLKELQLRQVV 549 (568)
Q Consensus 536 a~~~~~~~~~~~~~ 549 (568)
|...+....+....
T Consensus 444 A~~~l~~A~~~~~~ 457 (484)
T COG4783 444 AIIFLMRASQQVKL 457 (484)
T ss_pred HHHHHHHHHHhccC
Confidence 88777777666533
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=5.7e-06 Score=48.44 Aligned_cols=33 Identities=33% Similarity=0.931 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 041458 170 TYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPN 202 (568)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 202 (568)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 355555555555555555555555555555444
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=7.5e-06 Score=47.91 Aligned_cols=33 Identities=42% Similarity=0.865 Sum_probs=21.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPN 516 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 516 (568)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=0.00033 Score=66.38 Aligned_cols=123 Identities=15% Similarity=0.224 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 041458 171 YNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCK 250 (568)
Q Consensus 171 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 250 (568)
-..|+..+...++++.|.++|+++.+.. |+ ....++..+...++-.+|.+++++.+.. .+.+..........+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 3445555666677777777777777652 33 3444666666667777777777777654 23355555555666677
Q ss_pred cCChHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHcCCCHHHHHHHHHHhc
Q 041458 251 EGRTEEAIRFFRDLPSKGFEPN-VVSYNILLRSLCMEGRWEEANELLAEMD 300 (568)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 300 (568)
.++++.|+.+.+++.+. .|+ -.+|..|..+|.+.|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777665 333 3477777777777777777777776654
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.04 E-value=0.00025 Score=57.95 Aligned_cols=126 Identities=13% Similarity=0.071 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHH
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD--SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPD--VDNFNALLL 490 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~ 490 (568)
|..++..+ ..++...+...++.+.+....-. ......+...+...|++++|...|+........|+ ......+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444444 36778888888888877532211 12334455677788888888888888887553332 224445677
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
.+...|++++|...++..... ......+......+...|++++|+..|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788888888888888664432 234556667778888889999888888764
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.02 E-value=0.00046 Score=56.33 Aligned_cols=116 Identities=15% Similarity=0.143 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCh--hHHHHHHHHHHcCCCHHH
Q 041458 216 ERGVHAAMKLLDDIIAKGGKP--NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNV--VSYNILLRSLCMEGRWEE 291 (568)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 291 (568)
.++...+...++.+....... .....-.+...+...|++++|...|+.+......|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555542111 0112222334555566666666666666554322211 122334555556666666
Q ss_pred HHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 041458 292 ANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDE 333 (568)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (568)
|+..++..... ......+....+.|.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666553322 22333444555566666666666665554
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=1.1e-05 Score=46.79 Aligned_cols=32 Identities=34% Similarity=0.690 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 041458 170 TYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVP 201 (568)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 201 (568)
+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555443
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=1.2e-05 Score=46.60 Aligned_cols=32 Identities=38% Similarity=0.592 Sum_probs=16.6
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP 515 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 515 (568)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.98 E-value=0.00033 Score=55.04 Aligned_cols=107 Identities=13% Similarity=0.019 Sum_probs=67.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYK--PDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQM--PNETTYTILV 524 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll 524 (568)
++..++..+...|++++|.+.|+.+.+.... .....+..+..++.+.|++++|.+.++.+....-. .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3455566666777777777777777643211 11345555677777777777777777777653111 1234566666
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCHHHHH
Q 041458 525 EGIAHQDELELSAEVLKELQLRQVVSESAVE 555 (568)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 555 (568)
.++.+.|+.++|.+.++++++..+.+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 6777777777777777777777776555443
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.88 E-value=0.00027 Score=52.72 Aligned_cols=94 Identities=20% Similarity=0.145 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041458 452 SLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQD 531 (568)
Q Consensus 452 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 531 (568)
.+...+...|++++|...++.+.+.... +...+..+...+...|++++|.+.+++..+.. +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 3444455555555555555555543221 23444455555555556666666665555532 223345555555555566
Q ss_pred ChhHHHHHHHHHHHcC
Q 041458 532 ELELSAEVLKELQLRQ 547 (568)
Q Consensus 532 ~~~~a~~~~~~~~~~~ 547 (568)
+++.|...+++..+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 6666666655555433
No 150
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.84 E-value=0.027 Score=52.65 Aligned_cols=443 Identities=12% Similarity=0.066 Sum_probs=219.5
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 041458 84 LQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYG 163 (568)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 163 (568)
++=+++.. .+.|..+|-.|+.-+..++.+++.++++++|..- ++-=..+|...+.+-....++.....+|.+.....
T Consensus 30 rLRerIkd--NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKD--NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhc--CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 44444433 3568999999999999999999999999999853 22234578888888778889999999999988764
Q ss_pred CCCcHHHHHHHHHHHHhcCCh------HHHHHHHHHHHH-CCCCCCH-hhHHHHHHH---HH------HcCCHHHHHHHH
Q 041458 164 YPTNTVTYNSLVRGLCMLGNL------NQSLQFLDRLIQ-KGLVPNA-FTYSFLLEA---AY------KERGVHAAMKLL 226 (568)
Q Consensus 164 ~~~~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~-~~~~~~~-~~~~~li~~---~~------~~~~~~~a~~~~ 226 (568)
.+...|...+.---+.... ....+.|+-... .++.|-. ..|+..+.. .- .+.+++...+.+
T Consensus 107 --l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 --LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred --ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 3577777777655444321 122233333332 2444432 334433322 22 233445566666
Q ss_pred HHHHHcCCCCCHhhHHH------HHHHHH-h--cC----ChHHHHHHHHHhhh--CCCC----CChhHHHHHHH------
Q 041458 227 DDIIAKGGKPNLVSYNV------LLTGLC-K--EG----RTEEAIRFFRDLPS--KGFE----PNVVSYNILLR------ 281 (568)
Q Consensus 227 ~~~~~~~~~~~~~~~~~------ll~~~~-~--~g----~~~~A~~~~~~~~~--~~~~----p~~~~~~~l~~------ 281 (568)
.+++...+..-...|+- =++-.. + .| -+-.|.+.++++.. .|.. .+..++|....
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 66654422111111211 111100 0 01 13345555555432 1211 12222222111
Q ss_pred -----HHHcC-----CC-HHH-HHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH
Q 041458 282 -----SLCME-----GR-WEE-ANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPI 349 (568)
Q Consensus 282 -----~~~~~-----g~-~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 349 (568)
--... |+ ..+ ..-++++.... +......|-.--.-+...++-+.|++..+.-. +..+. ....
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~----~~sps-L~~~ 338 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGI----EMSPS-LTMF 338 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc----cCCCc-hhee
Confidence 00000 00 000 00001111000 00111112111122233445555554443322 21221 2222
Q ss_pred H-HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH---hCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 041458 350 I-ARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLC---GVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRK 425 (568)
Q Consensus 350 i-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 425 (568)
+ ..|.-..+-+.....|+...+.- ..-+..+..-. ..|+++...+++-.-.. .-...|...+.+-.+.
T Consensus 339 lse~yel~nd~e~v~~~fdk~~q~L----~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~ 410 (660)
T COG5107 339 LSEYYELVNDEEAVYGCFDKCTQDL----KRKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRK 410 (660)
T ss_pred HHHHHhhcccHHHHhhhHHHHHHHH----HHHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHH
Confidence 2 22333344444444444332110 00000000000 01122111111111111 1234466667776777
Q ss_pred CChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHccCChHHHHH
Q 041458 426 GKTYQAFQLLYEMTKYG-FTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNF-NALLLGLCKSRRTDLSLE 503 (568)
Q Consensus 426 g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~ 503 (568)
.-.+.|..+|-+..+.| +.++..++++++.-++ .|+..-|.++|+.-... -||...| +..+.-+.+.++-..|..
T Consensus 411 ~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~nara 487 (660)
T COG5107 411 RGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARA 487 (660)
T ss_pred hhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHH
Confidence 77788888888888777 5566777777777665 46777788887765543 2343333 445666677788788888
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 504 VFQMMIEKGQMPN--ETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 504 ~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
+|+..+.+ +..+ ..+|..+++--..-|+...+..+-+++.+.-+.
T Consensus 488 LFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 488 LFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 88866654 3334 467777787777788887777777777766555
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.83 E-value=0.00051 Score=62.94 Aligned_cols=130 Identities=12% Similarity=0.105 Sum_probs=80.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCChhhHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 041458 99 VQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK-KGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRG 177 (568)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 177 (568)
.+|..++....+.+..+.|+.+|.++.+.+. .+..+|......-.. .++.+.|.++|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3566777777777777888888887775431 133334433333223 45556677777777665 55677777777777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 041458 178 LCMLGNLNQSLQFLDRLIQKGLVPNA----FTYSFLLEAAYKERGVHAAMKLLDDIIAK 232 (568)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 232 (568)
+.+.++.+.|..+|++.... .+.. ..|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777654 2233 36666676666777777777776666654
No 152
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.81 E-value=0.00078 Score=64.12 Aligned_cols=104 Identities=12% Similarity=0.010 Sum_probs=75.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 041458 418 VITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRR 497 (568)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 497 (568)
-...+...|++++|++.|++.++... .+...|..+..+|...|++++|...++++.+.... +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 34556677888888888888887632 25667777788888888888888888888876443 66677788888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041458 498 TDLSLEVFQMMIEKGQMPNETTYTILVE 525 (568)
Q Consensus 498 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 525 (568)
+++|...|+++++. .|+.......+.
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l~ 111 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 88888888888874 455444444443
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.80 E-value=0.0006 Score=62.48 Aligned_cols=145 Identities=14% Similarity=0.053 Sum_probs=100.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM-EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
+|..++...-+.+..+.|..+|.+..+.+ ..+..+|......-.+ .++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 57777888888888888899998887542 2244556555555333 56777799999888764 344778888888888
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhh
Q 041458 493 CKSRRTDLSLEVFQMMIEKGQMPNE---TTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYD 562 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (568)
.+.|+.+.|..+|++.+.. +.++. ..|...++-=.+.|+.+.+.++.+++.+.-+. ...+..++..|.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~-~~~~~~f~~ry~ 151 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE-DNSLELFSDRYS 151 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT-S-HHHHHHCCT-
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh-hhHHHHHHHHhh
Confidence 8889999999999988865 33322 48888888888889999888888888887555 334444555444
No 154
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.80 E-value=0.046 Score=54.06 Aligned_cols=206 Identities=12% Similarity=-0.019 Sum_probs=129.2
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHhhHHHH-------HHHHHhcCChhhHHHHHHHHHhCCCCC
Q 041458 95 KPDVVQATNLLYDLCKANKMKKAIKVMEMMVSS-GIIPDASSYTYL-------VNCLCKKGNVGYAMQLVEKMEDYGYPT 166 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~~~~~~~~~ 166 (568)
.|.+..|..+.......-.++.|...|-+...- |++. +.-...+ ...-+--|++++|.+++-++.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~-vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL-VKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH-HHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 467788988887777777888888877665432 2210 0011111 111223588999999998887652
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 041458 167 NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK-GLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLL 245 (568)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 245 (568)
..|..+.+.|+|-...++++.--.. .-..-...|+.+...+.....+++|.+.|..-.. ....+
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ 829 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQI 829 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHH
Confidence 3467778888888877776531100 0011235677788888888888888888765432 12356
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChH
Q 041458 246 TGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTD 325 (568)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (568)
.++.+..++++-+.+-+.+.+ +....-.+..++.+.|.-++|.+.+-+.. .| ...+..|...+++.
T Consensus 830 ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHH
Confidence 677777777777766666543 55566778888888888888887765432 11 13345566667777
Q ss_pred HHHHHHHH
Q 041458 326 HALKVLDE 333 (568)
Q Consensus 326 ~a~~~~~~ 333 (568)
+|.++-+.
T Consensus 896 ~avelaq~ 903 (1189)
T KOG2041|consen 896 EAVELAQR 903 (1189)
T ss_pred HHHHHHHh
Confidence 77766544
No 155
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.80 E-value=0.0046 Score=55.19 Aligned_cols=58 Identities=7% Similarity=0.023 Sum_probs=46.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 487 ALLLGLCKSRRTDLSLEVFQMMIEK--GQMPNETTYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 487 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
.+..-|.+.|.+..|..-++.+++. +.+........+..+|...|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 5566788999999999999999874 223355677788899999999999988877654
No 156
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.78 E-value=0.00054 Score=65.24 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=65.1
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHH
Q 041458 96 PDVVQATNLLYDLCKANKMKKAIKVMEMMVSS--GIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNS 173 (568)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (568)
.+......++..+....+++.+..++-+.... ....-..+..++++.|.+.|..+.++.++..=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34444555555555555555555555555443 1111223445556666666666666666655555565566666666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 041458 174 LVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKE 216 (568)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 216 (568)
||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666665555554444555555444444443
No 157
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.78 E-value=0.00046 Score=65.70 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 041458 390 VGKVQEAFAIIQSLGNKQNS--SPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEAL 467 (568)
Q Consensus 390 ~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 467 (568)
..+++++..++.+....... .-..+..++|+.|.+.|..++++.++..=...|+-||..+++.|++.+.+.|++..|.
T Consensus 79 ~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~ 158 (429)
T PF10037_consen 79 KDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAA 158 (429)
T ss_pred HhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHH
Confidence 34445555555554443111 1122334555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHc
Q 041458 468 EIFVVMEEYDYKPDVDNFNALLLGLCK 494 (568)
Q Consensus 468 ~~~~~m~~~~~~p~~~~~~~li~~~~~ 494 (568)
++...|...+.-.+..++.--+.+|.+
T Consensus 159 ~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 159 KVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 555555533333344444333333333
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.76 E-value=0.0014 Score=55.26 Aligned_cols=87 Identities=20% Similarity=0.104 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD--SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLL 490 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 490 (568)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.... +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3455566666667777777777777665432222 245666666667777777777777766654322 4455555566
Q ss_pred HHHccCChHH
Q 041458 491 GLCKSRRTDL 500 (568)
Q Consensus 491 ~~~~~g~~~~ 500 (568)
.+...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 6666665433
No 159
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00043 Score=60.86 Aligned_cols=101 Identities=14% Similarity=0.160 Sum_probs=69.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHH
Q 041458 421 SLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDL 500 (568)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 500 (568)
-+.+.+++++|+..|.+.++.. +-|.+-|..-..+|++.|.++.|++-.+.....+.. -..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 4566777888888888777753 225666667777777888887777777777665333 35567777777777888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH
Q 041458 501 SLEVFQMMIEKGQMPNETTYTILVE 525 (568)
Q Consensus 501 a~~~~~~m~~~g~~p~~~~~~~ll~ 525 (568)
|++.|++.++ +.|+-.+|..=++
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 8877777776 5676666654443
No 160
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.72 E-value=4.5e-05 Score=43.03 Aligned_cols=28 Identities=36% Similarity=0.873 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 041458 170 TYNSLVRGLCMLGNLNQSLQFLDRLIQK 197 (568)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 197 (568)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 161
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=5.2e-05 Score=42.78 Aligned_cols=28 Identities=39% Similarity=0.865 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 041458 240 SYNVLLTGLCKEGRTEEAIRFFRDLPSK 267 (568)
Q Consensus 240 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 267 (568)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.67 E-value=0.0015 Score=52.34 Aligned_cols=96 Identities=11% Similarity=-0.008 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041458 450 YSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH 529 (568)
Q Consensus 450 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 529 (568)
.-.+...+...|++++|.++|+.+...++. +..-|..|.-++-..|++++|+..|..+...+ +.|+..+..+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 334445556667777777777766655444 55666666666777777777777777766653 3455666666667777
Q ss_pred cCChhHHHHHHHHHHHcC
Q 041458 530 QDELELSAEVLKELQLRQ 547 (568)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~ 547 (568)
.|+.+.|++.|+..+..-
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 777777777777666544
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.66 E-value=0.0015 Score=62.20 Aligned_cols=92 Identities=8% Similarity=-0.113 Sum_probs=69.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 463 (568)
...+...|++++|+..|+++....+. +...|..+..+|.+.|++++|+..++++++... .+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 55666778888888888888776554 556677777788888888888888888877532 2456777777888888888
Q ss_pred HHHHHHHHHHHhCC
Q 041458 464 EEALEIFVVMEEYD 477 (568)
Q Consensus 464 ~~a~~~~~~m~~~~ 477 (568)
++|...|+...+.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888887653
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.65 E-value=0.00092 Score=49.72 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK 494 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 494 (568)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 4456667777888888888888887653 223466777788888888888898888888765433 45677788888888
Q ss_pred cCChHHHHHHHHHHHHC
Q 041458 495 SRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~~~ 511 (568)
.|+.++|...+++..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 88888888888887653
No 165
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.62 E-value=0.00083 Score=49.75 Aligned_cols=27 Identities=37% Similarity=0.656 Sum_probs=12.3
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHH
Q 041458 257 AIRFFRDLPSKGFEPNVVSYNILLRSL 283 (568)
Q Consensus 257 A~~~~~~~~~~~~~p~~~~~~~l~~~~ 283 (568)
.+.+|+.|...+++|+..+|+.++..+
T Consensus 88 LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 88 LLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 334444444444444444444444433
No 166
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0088 Score=55.15 Aligned_cols=159 Identities=12% Similarity=0.004 Sum_probs=72.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCh-----------hhHHHHHH
Q 041458 352 RLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQ-----------EFYKYVIT 420 (568)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~li~ 420 (568)
++.-.|+.++|.+.-..+++.....-...+.-...+.-.++.+.|...|++....++.-.. ..|..-..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN 257 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGN 257 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhh
Confidence 4455666666666665555543322222222222233345555555555555443221100 01111222
Q ss_pred HHHhcCChhHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 041458 421 SLCRKGKTYQAFQLLYEMTKY---GFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRR 497 (568)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 497 (568)
-..+.|++..|.+.+.+.+.. +.+|+...|.....+..+.|+.++|+.--+...+.+.. =...|..-..++...++
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEK 336 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHH
Confidence 334566666666666666542 12333344444445555666666666655555543100 01112222233444556
Q ss_pred hHHHHHHHHHHHHC
Q 041458 498 TDLSLEVFQMMIEK 511 (568)
Q Consensus 498 ~~~a~~~~~~m~~~ 511 (568)
+++|.+-++...+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666666665553
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.00099 Score=58.70 Aligned_cols=152 Identities=16% Similarity=0.108 Sum_probs=106.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCC
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGL 462 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 462 (568)
..-+.+.+++++|+..|.+..+..+. |.+.|..-..+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 45678899999999999999988665 7788888899999999999999999888874 454 5689999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHH-HHHccCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 041458 463 IEEALEIFVVMEEYDYKPDVDNFNALLL-GLCKSRRTD---LSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAE 538 (568)
Q Consensus 463 ~~~a~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 538 (568)
+++|.+.|++..+. .|+-.+|-.=+. +--+.+..+ .+..-++.....|..||...... ...-+-.....
T Consensus 165 ~~~A~~aykKaLel--dP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~-----~~l~nnp~l~~ 237 (304)
T KOG0553|consen 165 YEEAIEAYKKALEL--DPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFN-----GDLMNNPQLMQ 237 (304)
T ss_pred HHHHHHHHHhhhcc--CCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhc-----cccccCHHHHH
Confidence 99999999998875 566666544333 333333333 44444444444555565433211 12222334455
Q ss_pred HHHHHHH
Q 041458 539 VLKELQL 545 (568)
Q Consensus 539 ~~~~~~~ 545 (568)
....|..
T Consensus 238 ~~~~m~~ 244 (304)
T KOG0553|consen 238 LASQMMK 244 (304)
T ss_pred HHHHHhh
Confidence 5666665
No 168
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.60 E-value=0.0013 Score=48.77 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=47.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 041458 174 LVRGLCMLGNLNQSLQFLDRLIQKGL-VPNAFTYSFLLEAAYKER--------GVHAAMKLLDDIIAKGGKPNLVSYNVL 244 (568)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (568)
.|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444666666666666666666 566666666666555421 233556677777777777777777777
Q ss_pred HHHHHh
Q 041458 245 LTGLCK 250 (568)
Q Consensus 245 l~~~~~ 250 (568)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 766543
No 169
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.59 E-value=0.0031 Score=49.37 Aligned_cols=97 Identities=15% Similarity=0.090 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHH
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFT-P-DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK--PDVDNFNALLL 490 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~ 490 (568)
+-..+..+.+.|++++|.+.|.++.+.... + ....+..+..++...|++++|.+.|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 445566677778888888888887764211 1 1235566777888888888888888887754222 12456777777
Q ss_pred HHHccCChHHHHHHHHHHHHC
Q 041458 491 GLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~ 511 (568)
++.+.|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 888888888888888888875
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.58 E-value=0.00012 Score=53.21 Aligned_cols=79 Identities=18% Similarity=0.260 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 041458 461 GLIEEALEIFVVMEEYDYK-PDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEGIAHQDELELSAE 538 (568)
Q Consensus 461 g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~ 538 (568)
|++++|+.+++++.+.... ++...+..+..+|.+.|++++|.+++++ .+ ..| +......+..++.+.|++++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455555555555433221 1233333345555555555555555544 21 111 11222233444555555555555
Q ss_pred HHHH
Q 041458 539 VLKE 542 (568)
Q Consensus 539 ~~~~ 542 (568)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.57 E-value=0.00016 Score=52.52 Aligned_cols=82 Identities=20% Similarity=0.202 Sum_probs=62.3
Q ss_pred cCChhHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHH
Q 041458 425 KGKTYQAFQLLYEMTKYGFT-PDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLE 503 (568)
Q Consensus 425 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 503 (568)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|.++++. .+.+.. +......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999986432 2455666689999999999999999988 332222 34555566889999999999999
Q ss_pred HHHHH
Q 041458 504 VFQMM 508 (568)
Q Consensus 504 ~~~~m 508 (568)
++++.
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99863
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.55 E-value=0.007 Score=60.35 Aligned_cols=141 Identities=11% Similarity=0.027 Sum_probs=96.2
Q ss_pred CCCCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhc--------CCHHHHHHHHHH
Q 041458 407 QNSSPQEFYKYVITSLCRK-----GKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCME--------GLIEEALEIFVV 472 (568)
Q Consensus 407 ~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~a~~~~~~ 472 (568)
....+...|...+.+.... ++...|..+|++.++. .|+ ...+..+..++... .++..+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3445667777777775432 2366888888888875 555 34454444433221 123344444444
Q ss_pred HHhC-CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 473 MEEY-DYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 473 m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
.... ....+...|..+.-.+...|++++|...++++++. .|+...|..+...+...|+.++|...+++....++.++
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 3332 12335567777766677789999999999999985 47888888889999999999999999999999988855
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.54 E-value=0.0055 Score=51.74 Aligned_cols=101 Identities=15% Similarity=0.094 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPD--VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEG 526 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 526 (568)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444555555555555555555543322211 2345555555555555555555555555431 1133444444444
Q ss_pred HHhcCC--------------hhHHHHHHHHHHHcCCCC
Q 041458 527 IAHQDE--------------LELSAEVLKELQLRQVVS 550 (568)
Q Consensus 527 ~~~~g~--------------~~~a~~~~~~~~~~~~~~ 550 (568)
+...|+ +++|.+++++..+.++.+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 444444 345555555555555444
No 174
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.50 E-value=0.0032 Score=50.54 Aligned_cols=88 Identities=10% Similarity=-0.016 Sum_probs=38.5
Q ss_pred HHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHH
Q 041458 281 RSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVD 360 (568)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 360 (568)
.-+...|++++|..+|+.+...+ +.+..-|-.|..++-..|++++|+..|......++ -|+..+-.+..++...|+.+
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHH
Confidence 33444444444444444444332 22333444444444444444444444444444332 13344444444444444444
Q ss_pred HHHHHHHHHh
Q 041458 361 LVVKCLDQMF 370 (568)
Q Consensus 361 ~a~~~~~~~~ 370 (568)
.|++.|+..+
T Consensus 121 ~A~~aF~~Ai 130 (157)
T PRK15363 121 YAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.49 E-value=0.00057 Score=46.69 Aligned_cols=61 Identities=10% Similarity=0.081 Sum_probs=34.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041458 489 LLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVS 550 (568)
Q Consensus 489 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 550 (568)
...+...|++++|.+.|+++++.. +-+...+..+..++...|++++|..+++++++..|.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345556666666666666666542 2244555566666666666666666666666655543
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.46 E-value=0.022 Score=50.87 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=24.8
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhH---HHHHHHHHhcCChhHHHHHHHHHHHC
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQA---TNLLYDLCKANKMKKAIKVMEMMVSS 127 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~ 127 (568)
+.|++++|...|+.+....+.+ .... -.+..++.+.++++.|...+++..+.
T Consensus 44 ~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3455555555555555542221 1111 22344445555555555555555554
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.45 E-value=0.011 Score=54.51 Aligned_cols=207 Identities=13% Similarity=0.148 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 041458 309 VTYNILIGSLAYHGKTDHALKVLDEMVKG----RFRPS-AASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG 383 (568)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (568)
..|......|...+++++|.+.|.+..+. +-+.+ ...|......| +..++++|...+++..
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~------------- 101 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAI------------- 101 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHH-------------
Confidence 34566666666777777777777665431 10000 01111112222 2224444444444332
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHC----CCCCC--hhhHHHHHHH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRK-GKTYQAFQLLYEMTKY----GFTPD--SYTYSSLIRG 456 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~ 456 (568)
..|...|++..|-..+.. +...|... |++++|++.|++..+. | .+. ...+..+...
T Consensus 102 -~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 102 -EIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp -HHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred -HHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 345555555555444433 34445555 7778888777766542 2 111 2345666677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-----hh-hHHHHHHHHHccCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHH
Q 041458 457 LCMEGLIEEALEIFVVMEEYDYKPD-----VD-NFNALLLGLCKSRRTDLSLEVFQMMIEK--GQMPN--ETTYTILVEG 526 (568)
Q Consensus 457 ~~~~g~~~~a~~~~~~m~~~~~~p~-----~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~--~~~~~~ll~~ 526 (568)
+.+.|++++|.++|++....-...+ .. .|...+-++...|++-.|.+.+++.... ++..+ ......|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 7788888888888877765322211 11 2233344556677788888888777653 12222 3455556665
Q ss_pred HHhcCChhHHHHHHHHHHHcC
Q 041458 527 IAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~ 547 (568)
| ..|+.+.-...+.+--...
T Consensus 245 ~-~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 245 Y-EEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp H-HTT-CCCHHHHCHHHTTSS
T ss_pred H-HhCCHHHHHHHHHHHcccC
Confidence 5 3456665555554444333
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.45 E-value=0.0037 Score=52.57 Aligned_cols=112 Identities=9% Similarity=-0.024 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCChhhHHHH
Q 041458 79 LNDAFLQLERMVS-KGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIP--DASSYTYLVNCLCKKGNVGYAMQL 155 (568)
Q Consensus 79 ~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~ 155 (568)
+..+...+..+.+ .+.......|..+...+...|++++|+..|+........+ ...++..+...+...|++++|++.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444455555532 2222235566777777888899999999999887653222 234677788888888999999988
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHH-------hcCChHHHHHHH
Q 041458 156 VEKMEDYGYPTNTVTYNSLVRGLC-------MLGNLNQSLQFL 191 (568)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~~~a~~~~ 191 (568)
+++..+. .+.....+..+...+. ..|+++.|...+
T Consensus 95 ~~~Al~~-~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 95 YFQALER-NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHHh-CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 8888765 2334455666666665 445555444333
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.44 E-value=0.0034 Score=52.77 Aligned_cols=80 Identities=20% Similarity=0.086 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD--SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLL 490 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 490 (568)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|.+.++........ ....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 3345555555566666666666666654422211 235566666666666666666666666543221 2334444444
Q ss_pred HHH
Q 041458 491 GLC 493 (568)
Q Consensus 491 ~~~ 493 (568)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.44 E-value=0.0088 Score=46.25 Aligned_cols=91 Identities=19% Similarity=0.065 Sum_probs=44.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHc
Q 041458 419 ITSLCRKGKTYQAFQLLYEMTKYGFTPD--SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK--PDVDNFNALLLGLCK 494 (568)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~ 494 (568)
..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++........ .+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3445555666666666666665554432 224445555555666666666666555532111 011111222334455
Q ss_pred cCChHHHHHHHHHHH
Q 041458 495 SRRTDLSLEVFQMMI 509 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~ 509 (568)
.|+.++|++.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 556666555554443
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.40 E-value=0.029 Score=51.75 Aligned_cols=168 Identities=17% Similarity=0.122 Sum_probs=87.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC--C-CC--HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041458 104 LLYDLCKANKMKKAIKVMEMMVSSGI--I-PD--ASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGL 178 (568)
Q Consensus 104 l~~~~~~~~~~~~A~~~~~~~~~~~~--~-~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 178 (568)
....|...|++++|.+.|....+... . +. ...|.....+|.+. ++++|.+.+ ...+..|
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~---------------~~A~~~y 104 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECY---------------EKAIEIY 104 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHH---------------HHHHHHH
Confidence 34566777888888888776643210 0 00 11122222222222 444444433 3344556
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc-CCHHHHHHHHHHHHHc----CCC-CCHhhHHHHHHHHHhcC
Q 041458 179 CMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKE-RGVHAAMKLLDDIIAK----GGK-PNLVSYNVLLTGLCKEG 252 (568)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g 252 (568)
...|++..|-+.+..+- ..|-.. |+++.|.+.|++..+. +.+ .-..++..+...+.+.|
T Consensus 105 ~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 105 REAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred HhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 66676666666555543 234444 6777777777766542 110 01234556667778888
Q ss_pred ChHHHHHHHHHhhhCCCC-----CChh-HHHHHHHHHHcCCCHHHHHHHHHHhccC
Q 041458 253 RTEEAIRFFRDLPSKGFE-----PNVV-SYNILLRSLCMEGRWEEANELLAEMDGG 302 (568)
Q Consensus 253 ~~~~A~~~~~~~~~~~~~-----p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 302 (568)
++++|.++|+++...... .+.. .+-..+-++...|+...|.+.+++....
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888888888877654222 1121 2223344566678888888888887654
No 182
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.40 E-value=0.0022 Score=54.01 Aligned_cols=116 Identities=14% Similarity=0.142 Sum_probs=67.9
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHH
Q 041458 82 AFLQLERMVSKGHKPDVVQATNLLYDLCK-----ANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLV 156 (568)
Q Consensus 82 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 156 (568)
-...|++... -..+..+|..++..|.+ .|..+-....+..|.+-|+..|..+|+.|++.+=+ |.+- -..+|
T Consensus 33 ~~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~f 108 (228)
T PF06239_consen 33 HEELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFF 108 (228)
T ss_pred hHHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHH
Confidence 3444554422 24577778888877763 35666666667777777777777777777766554 2211 11111
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 041458 157 EKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERG 218 (568)
Q Consensus 157 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 218 (568)
+.+- --| -.+-+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 109 Q~~F---------------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEF---------------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHh---------------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 111 12345667777777777777777777777777766553
No 183
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.39 E-value=0.0036 Score=52.78 Aligned_cols=86 Identities=17% Similarity=0.236 Sum_probs=57.2
Q ss_pred ChhhHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----------------CCHHHHHHH
Q 041458 411 PQEFYKYVITSLCR-----KGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCME----------------GLIEEALEI 469 (568)
Q Consensus 411 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~a~~~ 469 (568)
+..+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 55556666666653 356666666777777778877888888887776442 123456677
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccC
Q 041458 470 FVVMEEYDYKPDVDNFNALLLGLCKSR 496 (568)
Q Consensus 470 ~~~m~~~~~~p~~~~~~~li~~~~~~g 496 (568)
+++|...|+.||.+++..+++.+++.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 777777777777777777777775554
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.36 E-value=0.00096 Score=46.24 Aligned_cols=67 Identities=15% Similarity=0.089 Sum_probs=44.1
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCC
Q 041458 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQD-ELELSAEVLKELQLRQV 548 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~ 548 (568)
+...|..+...+...|++++|+..|++.++.+ +.+...|..+..++...| ++++|.+.+++.++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566666777777777777777777777642 234566666666777777 57777777777666543
No 185
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.31 E-value=0.16 Score=47.95 Aligned_cols=441 Identities=12% Similarity=0.132 Sum_probs=207.7
Q ss_pred hccCChHHHHHHHHHHHhCCCCCC------HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH--HHHh
Q 041458 74 HRDHKLNDAFLQLERMVSKGHKPD------VVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVN--CLCK 145 (568)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~ 145 (568)
.+.+++.+|..+|.+..+.- ..+ ...-+.++++|.. ++.+..........+.. | ...|-.+.. .+-+
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 46789999999999886642 222 2234567777765 45666666666666542 2 233444443 3347
Q ss_pred cCChhhHHHHHHHHHhC--CCCC------------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHhhHH
Q 041458 146 KGNVGYAMQLVEKMEDY--GYPT------------NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK----GLVPNAFTYS 207 (568)
Q Consensus 146 ~g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~ 207 (568)
.+.+++|.+.+..-... +..+ |...=+..+.++...|++.++..+++++... ....+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78899998887665543 2111 2222356677888999999999999888754 3446788888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHH
Q 041458 208 FLLEAAYKERGVHAAMKLLDDIIAK---GGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLC 284 (568)
Q Consensus 208 ~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 284 (568)
.++-.+.+ ..|-++.+. .+-| -|.-++-.|.+.=..-++.. -..+.|.......++....
T Consensus 172 ~~vlmlsr--------SYfLEl~e~~s~dl~p---dyYemilfY~kki~~~d~~~------Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSR--------SYFLELKESMSSDLYP---DYYEMILFYLKKIHAFDQRP------YEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhH--------HHHHHHHHhcccccCh---HHHHHHHHHHHHHHHHhhch------HHhhCcHHHHHHHHHHHHH
Confidence 76555443 233333222 1111 12333333332211111100 0011222222222222221
Q ss_pred cC--CCHHHHHHHHHHhccCCCCcCHh-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCcccHHHHHHHHHhcC
Q 041458 285 ME--GRWEEANELLAEMDGGDRSPTIV-TYNILIGSLAYHGKTDHALKVLDEMVKGRFR----PSAASYNPIIARLCSEG 357 (568)
Q Consensus 285 ~~--g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~ 357 (568)
-. .+..--+++++.....-+.|+.. +...+...+.+ +.+++..+-+.+....+. -=..++..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11112222232222222333321 12222222222 333333332222211100 01233444555555555
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHH--------HHHHHh----CCCHHHHHHHHHHHhhCCCCCChhhHHHHHH---HH
Q 041458 358 KVDLVVKCLDQMFHRRCKPNEGTYNG--------LAMLCG----VGKVQEAFAIIQSLGNKQNSSPQEFYKYVIT---SL 422 (568)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~ 422 (568)
+...|.+.+.-+....+. .....- ....|. ..+...-+.+++.....+.. .......++. -+
T Consensus 313 ~T~~a~q~l~lL~~ldp~--~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 313 QTEEAKQYLALLKILDPR--ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHL 389 (549)
T ss_pred hHHHHHHHHHHHHhcCCc--chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHH
Confidence 555555555544433221 111000 011110 11122223333333333221 1112222222 23
Q ss_pred HhcCC-hhHHHHHHHHHHHCCCCC-Chhh----HHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCC----hhhHHHHH
Q 041458 423 CRKGK-TYQAFQLLYEMTKYGFTP-DSYT----YSSLIRGLCM---EGLIEEALEIFVVMEEYDYKPD----VDNFNALL 489 (568)
Q Consensus 423 ~~~g~-~~~A~~~~~~~~~~~~~p-~~~~----~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li 489 (568)
-+.|. -++|+.+++...+- .| |... +..+=.+|.. ...+.+-..+-+-+.+.|+.|- ...-|.|.
T Consensus 390 W~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 34444 67788888777653 22 2222 2122223322 2233444444444456676653 33445554
Q ss_pred HH--HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 490 LG--LCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 490 ~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (568)
++ +...|++.++.-.-.=+.+ +.|++.+|..+.-+.....++++|..++.++--
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 43 4567788777654433333 678888888887777788888888888877654
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.27 E-value=0.00091 Score=46.19 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=24.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 459 MEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 459 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
..|++++|.++|+.+.+..+. +...+..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555443222 444444555555555555555555555544
No 187
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.029 Score=50.02 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=65.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC---ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 041458 446 DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSR---RTDLSLEVFQMMIEKGQMPNETTYTI 522 (568)
Q Consensus 446 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~ 522 (568)
|...|..|...|...|+++.|...|....+...+ |...+..+..++.... ...++.++|++++..+ +-|......
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 5667777777777777777777777776654332 5556666655544332 3456777777777642 335555666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 523 LVEGIAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
|...+...|++++|...|+.|.+..+.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 66667777777777777777777666633
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.25 E-value=0.027 Score=56.26 Aligned_cols=135 Identities=15% Similarity=0.078 Sum_probs=76.3
Q ss_pred CCCHhhHHHHHHHHHhc--C---ChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc--------CChHHHHHHHHHHHH
Q 041458 130 IPDASSYTYLVNCLCKK--G---NVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCML--------GNLNQSLQFLDRLIQ 196 (568)
Q Consensus 130 ~~~~~~~~~li~~~~~~--g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~ 196 (568)
+.|...|...+++.... + ....|..+|++..+.. |-....|..+..++... .+...+.+..++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 34556666665553322 1 2456666666666642 22233444333333221 112334444444333
Q ss_pred C-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 041458 197 K-GLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK 267 (568)
Q Consensus 197 ~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 267 (568)
. ....+...|..+.-.....|++++|...+++.+... |+...|..+...+...|+.++|.+.+++....
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2 123345566666555566788888888888877763 46777777777888888888888888777655
No 189
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.24 E-value=0.01 Score=53.48 Aligned_cols=102 Identities=9% Similarity=0.018 Sum_probs=67.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC----CHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPD--VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP----NETTYTI 522 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~~~~~ 522 (568)
.|...+....+.|++++|...|+.+.+..+... ...+..+..+|...|++++|...|+.+++. .| ....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHH
Confidence 344444444556778888888877775422211 245667777788888888888888888764 22 2345555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCHH
Q 041458 523 LVEGIAHQDELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 552 (568)
+...+...|+.++|.++++++++..+.+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 566677788888888888888888777554
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.24 E-value=0.0015 Score=44.55 Aligned_cols=57 Identities=25% Similarity=0.278 Sum_probs=37.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 453 LIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 453 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
+...+...|++++|.+.|+.+.+..+. +...+..+..++...|++++|...|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566677777777777777765433 566666677777777777777777777665
No 191
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.24 E-value=0.041 Score=47.83 Aligned_cols=47 Identities=19% Similarity=0.197 Sum_probs=24.8
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHH
Q 041458 488 LLLGLCKSRRTDLSLEVFQMMIEKGQMPN----ETTYTILVEGIAHQDELELS 536 (568)
Q Consensus 488 li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a 536 (568)
+...|.+.|.+..|..-++.+++. -|+ ...+..++.++.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 345566666666666666666653 222 23445555666666665533
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.22 E-value=0.0012 Score=45.55 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=32.4
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041458 494 KSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVS 550 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 550 (568)
..|++++|+++|+++.+. .+-+...+..+..+|.+.|++++|.++++++....+.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 456666666666666654 12255555556666666666666666666666666554
No 193
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.19 Score=46.80 Aligned_cols=263 Identities=12% Similarity=0.008 Sum_probs=151.9
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
+.+.+..++.+|+..+...+...+. ++.-|..-...+...+++++|.--.+.-.+.... ......-.-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHH
Confidence 4566788899999999988887433 5666666666777777888776555444432100 1112222223333333333
Q ss_pred hHHHHHH---------------HHHhCC-CCCcHHHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 041458 151 YAMQLVE---------------KMEDYG-YPTNTVTYNSL-VRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAA 213 (568)
Q Consensus 151 ~a~~~~~---------------~~~~~~-~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 213 (568)
+|.+.++ ...... -+|....|..+ ..++.-.|+.++|.++--..++.... +......--.++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~ 213 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCL 213 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhccccc
Confidence 3332222 111111 11223333332 34556678888888887777665311 222222222334
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC-----------HhhHHHHHHHHHhcCChHHHHHHHHHhhhC---CCCCChhHHHHH
Q 041458 214 YKERGVHAAMKLLDDIIAKGGKPN-----------LVSYNVLLTGLCKEGRTEEAIRFFRDLPSK---GFEPNVVSYNIL 279 (568)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l 279 (568)
.-.++.+.+...|++.+..+.... ...+..-..-..+.|.+..|.+.|.+.+.. ..+|+...|...
T Consensus 214 yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 456788888888888776532110 011222233456788899999999887764 345566677777
Q ss_pred HHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 041458 280 LRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG 337 (568)
Q Consensus 280 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (568)
..+..+.|+.++|+.--++..+.+ +.-...+..-..++...+++++|.+-|++..+.
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777888899999888887776543 111223333344666678888888888877664
No 194
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.20 E-value=0.056 Score=46.96 Aligned_cols=42 Identities=12% Similarity=0.008 Sum_probs=20.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCH---HHHHHHHHhhhhcC
Q 041458 524 VEGIAHQDELELSAEVLKELQLRQVVSE---SAVERLVMQYDFEG 565 (568)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g 565 (568)
..-|.+.|.+..|..-++.+++..+.+. .++..++..|..-|
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLG 192 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhC
Confidence 4445555666666666666665555522 33344444444433
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.022 Score=50.79 Aligned_cols=111 Identities=12% Similarity=0.168 Sum_probs=89.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCChhhHHH
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCME---GLIEEALEIFVVMEEYDYKPDVDNFNA 487 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~ 487 (568)
|...|-.|...|...|+...|...|.+..+.. .++...+..+..++... .+..++.++|+++...+.. |+....-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 77889999999999999999999999998862 34667777777776554 3467899999999987655 7888888
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041458 488 LLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVE 525 (568)
Q Consensus 488 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 525 (568)
|...+...|++.+|...|+.|.+. -|....+..++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 889999999999999999999986 343344444443
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.12 Score=44.86 Aligned_cols=132 Identities=17% Similarity=0.091 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH----
Q 041458 170 TYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLL---- 245 (568)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll---- 245 (568)
+.++++..+.-.|.+.-...++.+.++...+.++.....+.+...+.||.+.|...|++..+...+.|....+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445555555555555555555555555444455555555555566666666666666554432233333333222
Q ss_pred -HHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccC
Q 041458 246 -TGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGG 302 (568)
Q Consensus 246 -~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 302 (568)
..|.-.+++.+|...|.++...... |...-|.-.-+..-.|+..+|.+.++.|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2334455666666666655544221 3333333333333346666666666666654
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.09 E-value=0.002 Score=44.57 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-ChHHHHHHHHHHHH
Q 041458 447 SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSR-RTDLSLEVFQMMIE 510 (568)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 510 (568)
..+|..+...+...|++++|+..|++..+.... +...|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345555566666666666666666666654333 4555666666666666 46666666666554
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.07 E-value=0.055 Score=41.89 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=25.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 041458 106 YDLCKANKMKKAIKVMEMMVSSGIIPD--ASSYTYLVNCLCKKGNVGYAMQLVEKMED 161 (568)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 161 (568)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555555443321 12233333444445555555555544443
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.04 E-value=0.092 Score=43.09 Aligned_cols=122 Identities=16% Similarity=0.037 Sum_probs=63.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCC
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFT-PDSYTYSSLIRGLCMEGL 462 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~ 462 (568)
...+...|+..+|...|++....-.-.|....-.+..+....+++.+|...++++.+.... -++.+...+...+...|.
T Consensus 96 a~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~ 175 (251)
T COG4700 96 ANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK 175 (251)
T ss_pred HHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCC
Confidence 4555566666666666666555444445555555566666666666666666665553210 012233455555666666
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 041458 463 IEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQM 507 (568)
Q Consensus 463 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 507 (568)
+++|...|+.....-. +...-......+.+.|+.+++..-+..
T Consensus 176 ~a~Aesafe~a~~~yp--g~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 176 YADAESAFEVAISYYP--GPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred chhHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 6666666666655422 222222223334555555554443333
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.03 E-value=0.14 Score=50.37 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=16.1
Q ss_pred HHHHccCChHHHHHHHHHHHHC
Q 041458 490 LGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
.+|-++|+..+|.++++++...
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhh
Confidence 3566778888888888887653
No 201
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.97 E-value=0.44 Score=46.89 Aligned_cols=130 Identities=14% Similarity=0.146 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041458 100 QATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDAS-SYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGL 178 (568)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 178 (568)
.|..++.---.....+.+..++..+... .|-.. -|-.....-.+.|..+.+.++|++-... ++.....|...+..+
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 3444443333333334444555544432 12222 2333333334455555556666555542 444455555444433
Q ss_pred H-hcCChHHHHHHHHHHHHC-CCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 041458 179 C-MLGNLNQSLQFLDRLIQK-GLV-PNAFTYSFLLEAAYKERGVHAAMKLLDDIIAK 232 (568)
Q Consensus 179 ~-~~g~~~~a~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 232 (568)
. ..|+.+...+.|+...+. |.. .....|...|..-..++++.....+++++++.
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 3 234555555555555442 211 12334455555555555555555555555543
No 202
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.55 Score=48.01 Aligned_cols=142 Identities=17% Similarity=0.176 Sum_probs=85.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChH
Q 041458 106 YDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLN 185 (568)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 185 (568)
..+.+.|++++|...|-+.+.. + + -..+|.-|....+..+--.+++.+.+.|+. +...-..|+.+|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~-l--e---~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF-L--E---PSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc-C--C---hHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 3345778888888777665532 1 1 134455556666666667777777777764 5555667888888888887
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 041458 186 QSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLP 265 (568)
Q Consensus 186 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 265 (568)
+-.+..+... .|.. ..-....+..+.+.+-.++|..+-.+... .......++ -..+++++|++.+..+.
T Consensus 449 kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 7776665543 2211 11234456666666666666555443321 233333333 34677888888887764
No 203
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.96 E-value=0.31 Score=45.08 Aligned_cols=280 Identities=12% Similarity=0.063 Sum_probs=142.4
Q ss_pred cCChHHHHHHHHHhhhCCCCCChhHHHHHHHH--HHcCCCHHHHHHHHHHhccCCCCcCHhh--HHHHHHHHHhcCChHH
Q 041458 251 EGRTEEAIRFFRDLPSKGFEPNVVSYNILLRS--LCMEGRWEEANELLAEMDGGDRSPTIVT--YNILIGSLAYHGKTDH 326 (568)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~ 326 (568)
.|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+-|... |.... ...|.-...+.|..+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 45555555554443211 12233333333333 23356666666666666532 11111 1122222234566666
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCChhhHHH-HHHH-----HhCCCHHHHHHH
Q 041458 327 ALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRC-KPNEGTYNG-LAML-----CGVGKVQEAFAI 399 (568)
Q Consensus 327 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~-~~~~-----~~~~~~~~a~~~ 399 (568)
|..+-+..-..-.. -...+...+...+..|+++.|+++++.-....+ .++..--.- +..- .-..+...|...
T Consensus 173 Ar~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 66665555443211 334556666666677777777766665544322 222221111 1111 112334444444
Q ss_pred HHHHhhCCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH---h
Q 041458 400 IQSLGNKQNSSPQEF-YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME---E 475 (568)
Q Consensus 400 ~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~---~ 475 (568)
-.+..+. .||.+. --.-..++.+.|+..++-.+++.+-+.. |....+ .+..+.+.|+.. ..-+++.. .
T Consensus 252 A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia--~lY~~ar~gdta--~dRlkRa~~L~s 323 (531)
T COG3898 252 ALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIA--LLYVRARSGDTA--LDRLKRAKKLES 323 (531)
T ss_pred HHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHH--HHHHHhcCCCcH--HHHHHHHHHHHh
Confidence 4443332 222211 1223456778888888888888887763 333332 233344555432 22222222 2
Q ss_pred CCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHc
Q 041458 476 YDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH-QDELELSAEVLKELQLR 546 (568)
Q Consensus 476 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~ 546 (568)
.. +.+.+....+..+-...|++..|..--+.... ..|....|..|.+.-.. .|+-.++++++-+.++.
T Consensus 324 lk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 LK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 21 12566666777777788888777776666655 47777777777665544 48888888888777654
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.88 E-value=0.0095 Score=41.69 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=30.7
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
.|.+.+++++|.+++++++..+ +.+...|......+.+.|++++|.+.+++..+..+.++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 3445555555555555555531 22444444455555555555555555555555555433
No 205
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.85 E-value=0.39 Score=44.48 Aligned_cols=298 Identities=14% Similarity=0.102 Sum_probs=140.6
Q ss_pred HHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 041458 171 YNSLVRGLCM--LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEA--AYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLT 246 (568)
Q Consensus 171 ~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 246 (568)
|.+|-.++.. .|+-..|.++-.+..+. +.-|..-.--++.+ ..-.|+.+.|.+-|+.|... +.+-..=++
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHH
Confidence 4444444433 35666666655544321 22233333333332 23356666666666666542 222222222
Q ss_pred H----HHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCC-CCcCHhhH--HHHHHHHH
Q 041458 247 G----LCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGD-RSPTIVTY--NILIGSLA 319 (568)
Q Consensus 247 ~----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~--~~l~~~~~ 319 (568)
+ .-+.|..+.|.++-++.-..-.. -...+...+...+..|+++.|+++++.-+... +.++..-- ..|+.+-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 2 13456666666665555433111 23455566666666666666666665543322 12222111 11111110
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHH
Q 041458 320 YHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAI 399 (568)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 399 (568)
.. .-..+...|...-.+..+..+..-.........+.+.|+..++-.+
T Consensus 238 ~s--------------------------------~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 238 MS--------------------------------LLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HH--------------------------------HhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhH
Confidence 00 0011223333333333322211112222224455555555555556
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041458 400 IQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKY-GFTPD-SYTYSSLIRGLCMEGLIEEALEIFVVMEEYD 477 (568)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 477 (568)
++.+-+..+.|+. ...|.+..--+.++.-+++..+. .++|| ......+..+-...|++..|..--+....
T Consensus 286 lE~aWK~ePHP~i------a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-- 357 (531)
T COG3898 286 LETAWKAEPHPDI------ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-- 357 (531)
T ss_pred HHHHHhcCCChHH------HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--
Confidence 6555555444432 12233333333333333333221 13443 45666677777778888777766665554
Q ss_pred CCCChhhHHHHHHHHHcc-CChHHHHHHHHHHHHCCCCC
Q 041458 478 YKPDVDNFNALLLGLCKS-RRTDLSLEVFQMMIEKGQMP 515 (568)
Q Consensus 478 ~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p 515 (568)
..|....|..|.+.-... |+-.++...+-+.++..-.|
T Consensus 358 ~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 358 EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 356677777777655444 88888888888877653333
No 206
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.71 Score=46.61 Aligned_cols=107 Identities=14% Similarity=0.070 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK 494 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 494 (568)
.+--+..+...|+..+|.++-.+.. -||-..|-.-+.+++..+++++-.++-+.+. .+.-|...+.+|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 4444555555666666666555543 4455555555666666666665444433222 23445555666666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 041458 495 SRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVL 540 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 540 (568)
.|+.++|.+++-+.... . -...+|.+.|++.+|.+..
T Consensus 757 ~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 66666666665543211 1 2344555666666555443
No 207
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.79 E-value=0.47 Score=44.74 Aligned_cols=36 Identities=8% Similarity=-0.004 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041458 515 PNETTYTILVEGIAHQDELELSAEVLKELQLRQVVS 550 (568)
Q Consensus 515 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 550 (568)
.|.-.+..++.++.-.|+.++|.+.+++|.+..+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 345555667777778888888888888888776553
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.76 E-value=0.048 Score=44.51 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=26.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 487 ALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 487 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
.++..+...|++++|.++.+.+.... +-|...|..++.++...|+...|.++++++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444445555555555555555431 224445555555555555555555555443
No 209
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.76 E-value=0.48 Score=44.15 Aligned_cols=109 Identities=21% Similarity=0.221 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 041458 274 VSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARL 353 (568)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 353 (568)
.+.+..+.-+...|+...|.++-.+.. .||..-|-..+.+++..+++++-.++... +-++..|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 355566777788899999988887775 57888999999999999999987765322 23678899999999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHH
Q 041458 354 CSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQ 401 (568)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 401 (568)
.+.|+..+|..++.++. + -.-+..|.++|++.+|.+.--
T Consensus 248 ~~~~~~~eA~~yI~k~~------~---~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP------D---EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHCCCHHHHHHHHHhCC------h---HHHHHHHHHCCCHHHHHHHHH
Confidence 99999999988877621 1 222666777777777765433
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.73 E-value=0.012 Score=41.23 Aligned_cols=56 Identities=23% Similarity=0.135 Sum_probs=38.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 455 RGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 455 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
..|.+.+++++|.++++.+...++. +...|.....++.+.|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4566677777777777777765444 5666666777777777777777777777764
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.66 E-value=0.039 Score=49.70 Aligned_cols=100 Identities=19% Similarity=0.128 Sum_probs=70.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHH
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDS----YTYSSLIRGLCMEGLIEEALEIFVVMEEYDY--KPDVDNFNA 487 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ 487 (568)
.|...+..+.+.|++++|...|+.+++. .|+. ..+..+...|...|++++|...|+.+.+.-+ ......+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3555554445668888888888888875 3443 3566778888888999999999988875321 113445556
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 041458 488 LLLGLCKSRRTDLSLEVFQMMIEKGQMPNE 517 (568)
Q Consensus 488 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 517 (568)
+...+...|+.++|.+++++.++. .|+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 677788889999999999988874 4543
No 212
>PRK15331 chaperone protein SicA; Provisional
Probab=96.66 E-value=0.13 Score=41.79 Aligned_cols=87 Identities=9% Similarity=0.055 Sum_probs=44.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 041458 457 LCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELS 536 (568)
Q Consensus 457 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 536 (568)
+...|++++|..+|+-+.-.++. |..-|..|..++-..+++++|+..|......+ .-|+...-.....+...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 34455556665555555544333 44445555555555555555555555554432 12333333444455555555555
Q ss_pred HHHHHHHHH
Q 041458 537 AEVLKELQL 545 (568)
Q Consensus 537 ~~~~~~~~~ 545 (568)
+..|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 555555555
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.64 E-value=0.45 Score=47.01 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=34.0
Q ss_pred HHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHH
Q 041458 102 TNLLYDLCKAN--KMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEK 158 (568)
Q Consensus 102 ~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 158 (568)
+.-=.+|.+-+ .+-+.+.-++++.++|-.|+... +...++-.|.+.+|-++|.+
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 33344555444 34445556677888887777643 33456677888888888754
No 214
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.59 E-value=0.33 Score=40.02 Aligned_cols=102 Identities=12% Similarity=0.078 Sum_probs=53.2
Q ss_pred CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHhhHHHH
Q 041458 131 PDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL-VPNAFTYSFL 209 (568)
Q Consensus 131 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~l 209 (568)
|.+.---.|..+....|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+... ...+.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 334444445555566666666666666555433444555555555555566666666666665554321 0112233334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 041458 210 LEAAYKERGVHAAMKLLDDIIAK 232 (568)
Q Consensus 210 i~~~~~~~~~~~a~~~~~~~~~~ 232 (568)
.+.+...|...+|+..|+.....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh
Confidence 45555556666566666555554
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.57 E-value=0.016 Score=53.38 Aligned_cols=131 Identities=12% Similarity=-0.010 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhh----hCCCC-CChhHHHHHHHHHHcCCCHHHHHHHHHHhcc----CC-CCcCHhh
Q 041458 241 YNVLLTGLCKEGRTEEAIRFFRDLP----SKGFE-PNVVSYNILLRSLCMEGRWEEANELLAEMDG----GD-RSPTIVT 310 (568)
Q Consensus 241 ~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~ 310 (568)
|..|...|.-.|+++.|+...+.-. +-|-+ .....+..+..++.-.|+++.|.+.|+.... .| -......
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4444444445566666655443321 11111 1223455566666666666666666654321 11 1122344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 041458 311 YNILIGSLAYHGKTDHALKVLDEMVKG-----RFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFH 371 (568)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 371 (568)
..+|.+.|.-..++++|+.++.+-+.- +..-....+-++..+|...|..++|+.+.+..++
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455666666666666666665543210 1111334555666666667777766666555443
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.53 Score=41.18 Aligned_cols=135 Identities=8% Similarity=-0.014 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHH--
Q 041458 274 VSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIA-- 351 (568)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-- 351 (568)
...+.++.+....|.+.-...++.+..+...+.++.....|.+.-.+.|+.+.|...|++..+..-+.|..+.+.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345667777777788888888888887776666777888888888888888888888887765544445555544442
Q ss_pred ---HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCC
Q 041458 352 ---RLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQN 408 (568)
Q Consensus 352 ---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 408 (568)
.|.-.+++..|...+.++...........-+-.....-.|+..+|.+.++.+.+..+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 334455566666666666554322222222223333334556666666666655533
No 217
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.42 E-value=0.052 Score=50.26 Aligned_cols=97 Identities=10% Similarity=0.002 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhc----cCCC-CcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCCc
Q 041458 274 VSYNILLRSLCMEGRWEEANELLAEMD----GGDR-SPTIVTYNILIGSLAYHGKTDHALKVLDEMVK----GR-FRPSA 343 (568)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~ 343 (568)
..|..|-..|.-.|+++.|+...+.-. +.|- ......+..+.+++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666677777889999987766532 2221 12345677888999999999999998876542 22 12344
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 041458 344 ASYNPIIARLCSEGKVDLVVKCLDQMF 370 (568)
Q Consensus 344 ~~~~~li~~~~~~~~~~~a~~~~~~~~ 370 (568)
.+..++.+.|.-..++++|+.++.+-+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 556667777777778888888776554
No 218
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.33 E-value=0.66 Score=40.72 Aligned_cols=174 Identities=16% Similarity=0.125 Sum_probs=105.5
Q ss_pred CChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 041458 376 PNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSS--PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSL 453 (568)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 453 (568)
|....|+....-.+.|++++|...|+.+....+.. ...+.-.++.++-+.++.++|+..+++.++.-..-...-|...
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 34444555666666777777777777776654432 2244455566677788888888888877765322223334444
Q ss_pred HHHHHh-------cCCHHHHHHHHH---HHHhC----CCCCChhh------------HHHHHHHHHccCChHHHHHHHHH
Q 041458 454 IRGLCM-------EGLIEEALEIFV---VMEEY----DYKPDVDN------------FNALLLGLCKSRRTDLSLEVFQM 507 (568)
Q Consensus 454 ~~~~~~-------~g~~~~a~~~~~---~m~~~----~~~p~~~~------------~~~li~~~~~~g~~~~a~~~~~~ 507 (568)
+.+.+. ..|...+.+.+. +..+. ...||... =..+.+-|.+.|.+-.|..-+++
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 444432 233333333333 33321 22233222 12345678899999999999999
Q ss_pred HHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041458 508 MIEKGQMPN---ETTYTILVEGIAHQDELELSAEVLKELQLRQVVS 550 (568)
Q Consensus 508 m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 550 (568)
|++. .+-+ ...+-.+..+|.+.|..++|.+.-+-+....+.+
T Consensus 193 v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 193 VLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 9986 3322 3556677889999999999988766665555543
No 219
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.33 E-value=0.064 Score=41.98 Aligned_cols=52 Identities=10% Similarity=-0.012 Sum_probs=30.8
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 041458 477 DYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE-KGQMPNETTYTILVEGIA 528 (568)
Q Consensus 477 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~ 528 (568)
...|+..+..+++.+|+..|++..|.++++...+ .+++-+..+|..|+.-+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3456666666666666666666666666666554 245555666666665443
No 220
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=1.5 Score=44.49 Aligned_cols=331 Identities=11% Similarity=0.061 Sum_probs=163.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH
Q 041458 138 YLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNL--NQSLQFLDRLIQKGLVPNAFTYSFLLEAAYK 215 (568)
Q Consensus 138 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 215 (568)
.+|+-+...+.+..|+++-..+...-.. +..+|......+.+..+. +++.+..++=.+.. .-+..+|..+......
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHh
Confidence 3455566667777777776555432111 145566666666655321 22222222222111 1345667777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCC----CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHH
Q 041458 216 ERGVHAAMKLLDDIIAKGGK----PNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEE 291 (568)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 291 (568)
.|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+-...++-.+.++- +...+... ..+...
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhchh
Confidence 77777777766543222111 122233445555666777777666666655430 11111111 122344
Q ss_pred HHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHH-HHH----HHCCCCCCcccHHHHHHHHHhcCCHHHH----
Q 041458 292 ANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVL-DEM----VKGRFRPSAASYNPIIARLCSEGKVDLV---- 362 (568)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a---- 362 (568)
|..+|.+..+.. |.. .+-+.|.+..+...+-.+. +.. ...+..|+ .......+.+.....-.
T Consensus 591 a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 591 ALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred hhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHH
Confidence 445554443311 110 1111121111111111110 000 00111111 22222333332221111
Q ss_pred ------HHHHHHHhh-CCC-CCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 041458 363 ------VKCLDQMFH-RRC-KPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQL 434 (568)
Q Consensus 363 ------~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 434 (568)
+++.+.+.. .+. ..|...-..+..+...|+..+|.++-.+.+ .||...|-.-+.+++..+++++-+++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 111111111 111 223333333666667777777776655544 35777777778888888888877776
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 041458 435 LYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQM 507 (568)
Q Consensus 435 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 507 (568)
-+.+. .+.-|.-.+.+|.+.|+.++|.+++-+.... . -.+.+|.+.|++.+|.++--+
T Consensus 738 Akskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 738 AKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 65443 2556777888899999999999988765532 1 456778888888888776433
No 221
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.29 E-value=0.7 Score=40.58 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=29.0
Q ss_pred hccCChHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 041458 74 HRDHKLNDAFLQLERMVSKGHK--PDVVQATNLLYDLCKANKMKKAIKVMEMMVSS 127 (568)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 127 (568)
.+.|++++|...|+.+....+- -...+.-.++.++-+.++++.|+...++..+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3456666666666666554221 12223333445555666666666666665554
No 222
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.29 E-value=0.078 Score=41.49 Aligned_cols=85 Identities=16% Similarity=0.147 Sum_probs=68.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHH---------------CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTK---------------YGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME- 474 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~- 474 (568)
|..++..++.++++.|+.+....+++..-. ....|+..+..+++.+|+..|++..|.++.+...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456788899999999999999888876521 1245778888999999999999999999999887
Q ss_pred hCCCCCChhhHHHHHHHHHcc
Q 041458 475 EYDYKPDVDNFNALLLGLCKS 495 (568)
Q Consensus 475 ~~~~~p~~~~~~~li~~~~~~ 495 (568)
..+++.+...|..|+.-....
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 678888888898888754443
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.28 E-value=0.23 Score=40.51 Aligned_cols=111 Identities=24% Similarity=0.331 Sum_probs=75.5
Q ss_pred ChhhHHHHHH---HHHhcCChhHHHHHHHHHHHC--C-CCCChh--h----------------HHHHHHHHHhcCCHHHH
Q 041458 411 PQEFYKYVIT---SLCRKGKTYQAFQLLYEMTKY--G-FTPDSY--T----------------YSSLIRGLCMEGLIEEA 466 (568)
Q Consensus 411 ~~~~~~~li~---~~~~~g~~~~A~~~~~~~~~~--~-~~p~~~--~----------------~~~l~~~~~~~g~~~~a 466 (568)
|...|..++. .....++.+.+...+.++... | +-|+.. . ...++..+...|++++|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 3444555533 345678999999999998863 2 222211 1 23455667789999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 041458 467 LEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE-----KGQMPNETTYTI 522 (568)
Q Consensus 467 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 522 (568)
..+.+.+....+- |...|..+|.+|...|+..+|.+.|+++.+ .|+.|+..+-..
T Consensus 82 ~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 82 LRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 9999999976544 888999999999999999999999998864 488898876543
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.28 E-value=0.011 Score=41.95 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=29.6
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEK----GQ-MPN-ETTYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
+++.+...|...|++++|++.+++..+. |- .|+ ..++..+...+...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555554431 10 011 2344455555555556666555555544
No 225
>PRK15331 chaperone protein SicA; Provisional
Probab=96.21 E-value=0.19 Score=40.86 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=53.6
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHH
Q 041458 422 LCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLS 501 (568)
Q Consensus 422 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 501 (568)
+...|++++|..+|.-+...++. +..-|..|..+|-..+++++|...|......+.. |+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 34566777777777665554322 3444556666666677777777777666544332 444455566667777777777
Q ss_pred HHHHHHHHH
Q 041458 502 LEVFQMMIE 510 (568)
Q Consensus 502 ~~~~~~m~~ 510 (568)
...|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777777665
No 226
>PRK11906 transcriptional regulator; Provisional
Probab=96.19 E-value=0.34 Score=46.46 Aligned_cols=146 Identities=12% Similarity=0.060 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHhhCC-CCCC-hhhHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 041458 392 KVQEAFAIIQSLGNKQ-NSSP-QEFYKYVITSLCR---------KGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCME 460 (568)
Q Consensus 392 ~~~~a~~~~~~~~~~~-~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 460 (568)
..+.|..+|.+..... ..|+ ...|..+..++.. ..+..+|.++.++..+.+ .-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4677788888877221 2222 2334444333322 223446666667776654 23666666777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHH
Q 041458 461 GLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE---TTYTILVEGIAHQDELELSA 537 (568)
Q Consensus 461 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~ 537 (568)
++++.|..+|++....++. ....|......+.-+|+.++|.+.+++..+. .|.. ......++.|..++ .+.|.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 7788888888888765433 4555666666667788888888888887663 4533 33333444555554 45555
Q ss_pred HHHHH
Q 041458 538 EVLKE 542 (568)
Q Consensus 538 ~~~~~ 542 (568)
+++-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 55543
No 227
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.62 Score=41.72 Aligned_cols=140 Identities=16% Similarity=0.055 Sum_probs=65.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHH
Q 041458 423 CRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 423 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 502 (568)
...|+..+|...|......... +...-..++.+|...|+.+.|..++..+....-.........-+..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 3445555555555555443211 233444555555556666666665555442211111111222334444444444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CHHHHHHHHHhhhhcC
Q 041458 503 EVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV--SESAVERLVMQYDFEG 565 (568)
Q Consensus 503 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 565 (568)
.+-.+.-.. +.|...-..+...+...|+.+.|.+.+-.+++++.. +...-+.++..+..-|
T Consensus 224 ~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444331 224444445555555566666665555555444322 5555555555554444
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.10 E-value=0.022 Score=40.44 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CC-hhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEE----YDYK-PD-VDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
+++.+...|...|++++|+++|++..+ .|.. |+ ..++..+..+|...|++++|.+.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666665542 2211 11 34566666667777777777777766553
No 229
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.04 E-value=0.78 Score=44.24 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 041458 452 SLIRGLCMEGLIEEALEIFVVMEEYDYK-PDVDNFNALLLGLCKSRRTDLSLEVFQMMI 509 (568)
Q Consensus 452 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 509 (568)
.+...+.+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+--
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444445566666666666666532111 123344556666666666666666665543
No 230
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.00 E-value=0.24 Score=38.09 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=24.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041458 422 LCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME 474 (568)
Q Consensus 422 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 474 (568)
++..|+.+.|++.|.+.+..- +-....||.-..++.-.|+.++|++-+++..
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 344455555555555444331 1133445555555555555555555444444
No 231
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.96 E-value=0.028 Score=34.52 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHH
Q 041458 519 TYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLV 558 (568)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 558 (568)
+|..+..+|...|++++|+++++++++..|.++.....+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555666666677777777777777776666666555443
No 232
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.87 E-value=1.5 Score=40.86 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=62.8
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 041458 385 AMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIE 464 (568)
Q Consensus 385 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 464 (568)
..+...|+...|.++..+. ..|+...|-..+.+++..+++++-.++... +-++.-|...+.+|.+.|...
T Consensus 185 ~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 185 RKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 3334445444444443333 234667777777778877777766665432 113466777778888888887
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 041458 465 EALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQM 507 (568)
Q Consensus 465 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 507 (568)
+|..+...+ .+..-+..|.+.|++.+|.+.--+
T Consensus 255 eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 255 EASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777651 113456667777777777765444
No 233
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.86 E-value=1.7 Score=41.15 Aligned_cols=32 Identities=9% Similarity=0.043 Sum_probs=26.6
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 480 PDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 480 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
.+...+..++.++.-.|+.++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 35556677888889999999999999999875
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.84 E-value=0.2 Score=47.89 Aligned_cols=63 Identities=14% Similarity=0.034 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDS----YTYSSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|++++|++.+++..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355666666677777777777777766654 3442 24666666677777777777777666653
No 235
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.84 E-value=3.4 Score=44.48 Aligned_cols=109 Identities=21% Similarity=0.275 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHh--hHHHHHHHH
Q 041458 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIV--TYNILIGSL 318 (568)
Q Consensus 241 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~ 318 (568)
|.+....+.+.+.+++|.-.|+..-+ ...-+.+|...|+|.+|+.+..++.... |.. +-..|..-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHH
Confidence 34444445567777888777766432 2345667778888888888887775321 222 225677777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 041458 319 AYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQM 369 (568)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 369 (568)
...++.-+|-++..+.... ....+..|++...+++|..+....
T Consensus 1010 ~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 8888888888877776642 233455666667777777665443
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=1.2 Score=38.65 Aligned_cols=205 Identities=13% Similarity=0.072 Sum_probs=117.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 041458 100 QATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLC 179 (568)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 179 (568)
.|..-..+|...+++++|...+.+..+. ...+...|.+ ...++.|.-+.+++.+. +--+..|+--...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 4555566777888899888877777642 1223222322 23345666666666653 223455677778888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---C--CCCCHhhHHHHHHHHHhcCCh
Q 041458 180 MLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAK---G--GKPNLVSYNVLLTGLCKEGRT 254 (568)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~ll~~~~~~g~~ 254 (568)
.+|.++.|-..+++.-+. ..+.+++.|+++|++.... + .+.-...+...-+.+++...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 888888877777665331 2334455566666554332 1 011223344555666777777
Q ss_pred HHHHHHHHHhhhCC----CCCCh-hHHHHHHHHHHcCCCHHHHHHHHHHhccC---CCCcCHhhHHHHHHHHHhcCChHH
Q 041458 255 EEAIRFFRDLPSKG----FEPNV-VSYNILLRSLCMEGRWEEANELLAEMDGG---DRSPTIVTYNILIGSLAYHGKTDH 326 (568)
Q Consensus 255 ~~A~~~~~~~~~~~----~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 326 (568)
++|-..|.+-.... --++. ..|...|-.+.-..++..|...++.-... .-+.+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 77766654432110 01111 23455555666677888888888874332 2234567777777776 4566666
Q ss_pred HHHHH
Q 041458 327 ALKVL 331 (568)
Q Consensus 327 a~~~~ 331 (568)
+..++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 65544
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=1.6 Score=39.26 Aligned_cols=149 Identities=13% Similarity=0.100 Sum_probs=87.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 041458 104 LLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGN 183 (568)
Q Consensus 104 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 183 (568)
-.......|++.+|..+|......... +...-..+..+|...|+++.|..++..+...--.........-|..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 344567788888888888888876433 4556677788888888888888888887653211112222223444444444
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCChH
Q 041458 184 LNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKG-GKPNLVSYNVLLTGLCKEGRTE 255 (568)
Q Consensus 184 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~ 255 (568)
..+..++-.+.-.. +-|...-..+...+...|+.+.|.+.+-.++.+. .--|...-..++..+.-.|.-+
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 44444444444331 2255555566667777777777777666555441 1124444555555555544333
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.60 E-value=0.49 Score=45.37 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=57.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 041458 95 KPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDA----SSYTYLVNCLCKKGNVGYAMQLVEKMEDY 162 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 162 (568)
+.+...|+.+..+|.+.|++++|+..|++.++.+ |+. .+|..+..+|.+.|++++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4578889999999999999999999999999875 443 35899999999999999999999999875
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.54 E-value=0.44 Score=36.65 Aligned_cols=90 Identities=11% Similarity=-0.017 Sum_probs=53.8
Q ss_pred hhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHhcCCh
Q 041458 73 RHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASS---YTYLVNCLCKKGNV 149 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~ 149 (568)
.+..|+++.|++.|.+.+.. .+.....||.-..++.-+|+.++|++=+++..+-........ |..-...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 34567777777777766665 233566677777777777777777777776665322212222 22222345566777
Q ss_pred hhHHHHHHHHHhCC
Q 041458 150 GYAMQLVEKMEDYG 163 (568)
Q Consensus 150 ~~a~~~~~~~~~~~ 163 (568)
+.|+.-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77777776666655
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.54 E-value=1 Score=36.33 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=19.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 041458 103 NLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK 145 (568)
Q Consensus 103 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 145 (568)
.++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444444555555554444432 334444444444443
No 241
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.53 E-value=0.84 Score=35.34 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=28.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 041458 277 NILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF 339 (568)
Q Consensus 277 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (568)
..-+......|+-++-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334444555555555555555554422 44455555555555555555555555555555543
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.52 E-value=0.52 Score=41.74 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCC-CHHHHHHHHH
Q 041458 450 YSSLIRGLCMEGLIEEALEIFVVMEEYDYK--PDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK-GQMP-NETTYTILVE 525 (568)
Q Consensus 450 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p-~~~~~~~ll~ 525 (568)
|+.-+. +.+.|++.+|...|....+..+. -....+-.|..++...|++++|..+|..+.+. +-.| -+..+.-|..
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 444333 34566677777777777654221 12334556777778888888888888777763 1122 2355666667
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCHHHHHH
Q 041458 526 GIAHQDELELSAEVLKELQLRQVVSESAVER 556 (568)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 556 (568)
...+.|+.++|...++++.+..|..+.+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 7777888888888888888888776655443
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.43 E-value=1.1 Score=44.69 Aligned_cols=179 Identities=17% Similarity=0.199 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCc------HHHHHHHHHHHHh----cCChH
Q 041458 116 KAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTN------TVTYNSLVRGLCM----LGNLN 185 (568)
Q Consensus 116 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~----~g~~~ 185 (568)
-..-+|.-+..- . +.....++....-.|+-+.+++.+.+..+.+--.. .-.|+..+..++. ..+.+
T Consensus 175 ~G~G~f~L~lSl--L--Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL--L--PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh--C--CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 345566666553 1 22355666666677777788777777655321111 1234444444443 34678
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHH-HHHHHcCCHHHHHHHHHHHHHcCC---CCCHhhHHHHHHHHHhcCChHHHHHHH
Q 041458 186 QSLQFLDRLIQKGLVPNAFTYSFLL-EAAYKERGVHAAMKLLDDIIAKGG---KPNLVSYNVLLTGLCKEGRTEEAIRFF 261 (568)
Q Consensus 186 ~a~~~~~~m~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~ 261 (568)
.|.++++.+.+. -|+...|...- +.+...|++++|.+.|++...... +.....+--+.-.+.-.+++++|.+.|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 888888888876 66766665443 445567889999988887653211 112334444556677888999999999
Q ss_pred HHhhhCCCCCChhHHHHHH-HHHHcCCCH-------HHHHHHHHHhcc
Q 041458 262 RDLPSKGFEPNVVSYNILL-RSLCMEGRW-------EEANELLAEMDG 301 (568)
Q Consensus 262 ~~~~~~~~~p~~~~~~~l~-~~~~~~g~~-------~~a~~~~~~~~~ 301 (568)
..+.+..-. +...|.-+. .++...|+. ++|.++|.++..
T Consensus 329 ~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 988875322 333444333 334556766 888888887643
No 244
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.22 Score=46.52 Aligned_cols=129 Identities=16% Similarity=0.065 Sum_probs=84.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC-----CCCC---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 041458 418 VITSLCRKGKTYQAFQLLYEMTKY-----GFTP---------DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVD 483 (568)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~~~~-----~~~p---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 483 (568)
-...|.+.|++..|..-|++..+. +..+ -..+++.|.-+|.+.+++.+|++.-+...+.+.. |..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chh
Confidence 366788899999999998886542 1111 1223566666777788888888888777766543 666
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCC-hhHHHHHHHHHHHcCCC
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH-QDE-LELSAEVLKELQLRQVV 549 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~-~~~a~~~~~~~~~~~~~ 549 (568)
..---..+|...|+++.|+..|+++++ +.|+......=+..|.+ ... .+...++|..|+..-..
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 666667778888888888888888887 46655554444444433 222 33446777777765443
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.35 E-value=3.4 Score=41.23 Aligned_cols=116 Identities=17% Similarity=0.106 Sum_probs=73.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHH--HHHHHhCCCHHHHHHHHHHHhhCCC---CCChhhHHHHHHHHHhcCChhH
Q 041458 356 EGKVDLVVKCLDQMFHRRCKPNEGTYNG--LAMLCGVGKVQEAFAIIQSLGNKQN---SSPQEFYKYVITSLCRKGKTYQ 430 (568)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 430 (568)
..+.+.|.+++..+.+.- |+...+.. ...+...|++++|.+.|+....... ......+--+...+.-..++++
T Consensus 246 ~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 345677888888887763 44444444 6667778888888888886543211 1122334456667778899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHH-HhcCCH-------HHHHHHHHHHH
Q 041458 431 AFQLLYEMTKYGFTPDSYTYSSLIRGL-CMEGLI-------EEALEIFVVME 474 (568)
Q Consensus 431 A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~-------~~a~~~~~~m~ 474 (568)
|.+.|..+.+.. .-+..+|..+..+| ...|+. ++|.++|.+..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999999988753 11233333333332 345666 78888887765
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.33 E-value=3 Score=40.49 Aligned_cols=56 Identities=30% Similarity=0.322 Sum_probs=26.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCC-CChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 041458 244 LLTGLCKEGRTEEAIRFFRDLPSKGFE-PNVVSYNILLRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 244 ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 299 (568)
+..++-+.|+.++|.+.|++|.+.... -+......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333444555555555555555433111 12223444555555555555555555554
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.32 E-value=0.94 Score=44.43 Aligned_cols=156 Identities=13% Similarity=0.064 Sum_probs=78.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 041458 179 CMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAI 258 (568)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 258 (568)
.-.++++++.++.+.-.-.. ..+....+.++..+.+.|-.+.|+.+-..-.. -.....+.|+++.|.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHH
T ss_pred HHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHH
Confidence 34566666555543110000 11233456666666666666666665433211 123344567777776
Q ss_pred HHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 041458 259 RFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGR 338 (568)
Q Consensus 259 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (568)
++.++.. +...|..|.....+.|+++-|++.|.+... +..|+-.|.-.|+.+.-.++.+.....|
T Consensus 339 ~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 339 EIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 6654433 555677777777777777777777766542 4555556666666666666655555443
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 041458 339 FRPSAASYNPIIARLCSEGKVDLVVKCLDQ 368 (568)
Q Consensus 339 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 368 (568)
-++....++.-.|+.++..+++.+
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 134445555556666666555443
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.31 E-value=0.47 Score=46.45 Aligned_cols=157 Identities=19% Similarity=0.258 Sum_probs=79.4
Q ss_pred HHHhcCChhHHHHHHHH--HHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 041458 107 DLCKANKMKKAIKVMEM--MVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNL 184 (568)
Q Consensus 107 ~~~~~~~~~~A~~~~~~--~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 184 (568)
...-.++++.+.+..+. +.. .+ +..-.+.++..+-+.|..+.|+++...-. .-.....+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 33455677766665541 111 11 23446666666677777777766543221 224445566777
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 041458 185 NQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDL 264 (568)
Q Consensus 185 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 264 (568)
+.|.++.++. .+...|..|.+...+.|+++-|++.|.+..+ |..|+-.|.-.|+.+.-.++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 7666655432 2556666666666677777666666665432 344555556666666666665555
Q ss_pred hhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 041458 265 PSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 265 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 299 (568)
...| -+|....++.-.|+.++..+++.+.
T Consensus 400 ~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4432 2444444555556666666665543
No 249
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.31 E-value=2.8 Score=39.96 Aligned_cols=436 Identities=11% Similarity=0.010 Sum_probs=228.4
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
..+...+..++..+.+++|... .+--..+|..-+++-...+++.....+|.+..... .+...|...+..-.+....-
T Consensus 50 q~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl~YIRr~n~~~ 126 (660)
T COG5107 50 QYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYLEYIRRVNNLI 126 (660)
T ss_pred HHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHHHHHHhhCccc
Confidence 4456688999999999999664 34345678888888888899999999999988764 46777888776555543221
Q ss_pred ------hHHHHHHHHHh-CCCCC-cHHHHHHHHHHHH---hcC------ChHHHHHHHHHHHHCCCCCCHhhHHH-----
Q 041458 151 ------YAMQLVEKMED-YGYPT-NTVTYNSLVRGLC---MLG------NLNQSLQFLDRLIQKGLVPNAFTYSF----- 208 (568)
Q Consensus 151 ------~a~~~~~~~~~-~~~~~-~~~~~~~li~~~~---~~g------~~~~a~~~~~~m~~~~~~~~~~~~~~----- 208 (568)
...+.|+-... .++.| ....|+..+..+- ..| +.+...+.+.+|+...+..-...|+-
T Consensus 127 tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE 206 (660)
T COG5107 127 TGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFE 206 (660)
T ss_pred ccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHH
Confidence 12233443332 33443 3334555544332 122 34566667777765422211112211
Q ss_pred -HHHHHH-H------cCCHHHHHHHHHHHHH--cCCC----CCHhhHHH-----------HHHHHHhcC-----C-h-HH
Q 041458 209 -LLEAAY-K------ERGVHAAMKLLDDIIA--KGGK----PNLVSYNV-----------LLTGLCKEG-----R-T-EE 256 (568)
Q Consensus 209 -li~~~~-~------~~~~~~a~~~~~~~~~--~~~~----~~~~~~~~-----------ll~~~~~~g-----~-~-~~ 256 (568)
=+.-.. + ..-+-.|...++++.. .|.+ .+..++|. .|..-...| + . ..
T Consensus 207 ~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qR 286 (660)
T COG5107 207 LELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQR 286 (660)
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHH
Confidence 111110 0 1113455666666543 2321 12222222 111111110 0 0 00
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 257 AIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 257 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
..-++++.... +.-....|----..+...++-+.|....+.-... .|. .-..+-..|.-..+.+.....|+....
T Consensus 287 i~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 287 IHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 11111111111 0111222222223344556666676666554322 232 112233344444555555555554432
Q ss_pred CCCCCCcccHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhCC-CCCC
Q 041458 337 GRFRPSAASYNPIIARLCS---EGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQ-NSSP 411 (568)
Q Consensus 337 ~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 411 (568)
. ...--.++.+-+. .|+++.-.+++-+-. ..-...|.. +....+...++.|..+|-++.+.+ ..++
T Consensus 362 ~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~ 432 (660)
T COG5107 362 D-----LKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH 432 (660)
T ss_pred H-----HHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc
Confidence 1 0000001111000 122221111111111 111222222 555556677888999999998887 4566
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTY-SSLIRGLCMEGLIEEALEIFVVMEEYDYKPD--VDNFNAL 488 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l 488 (568)
+..+++++..++. |+..-|..+|+--... -||...| ...+..+...++-+.|..+|+...+. +..+ ...|..+
T Consensus 433 vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~km 508 (660)
T COG5107 433 VYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKM 508 (660)
T ss_pred eeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHH
Confidence 7788888887664 7888899999865543 3444443 45666777889999999999865532 1112 5688999
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041458 489 LLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH 529 (568)
Q Consensus 489 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 529 (568)
|+--..-|+...+..+-++|.+. .|-..+.....+-|.-
T Consensus 509 i~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~i 547 (660)
T COG5107 509 IEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHhh
Confidence 99888999999999888888873 5666555555555543
No 250
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.97 Score=42.38 Aligned_cols=97 Identities=10% Similarity=-0.001 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
.+++.+..++.+.+++.+|++.-++.+..+ ++|....-.-..+|...|+++.|+..|+++.+..+. |-..-+.++..-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 346667788889999999999999888764 446777777788999999999999999999986443 444555555554
Q ss_pred HccCCh-HHHHHHHHHHHHC
Q 041458 493 CKSRRT-DLSLEVFQMMIEK 511 (568)
Q Consensus 493 ~~~g~~-~~a~~~~~~m~~~ 511 (568)
-+..+. +...++|..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 444443 3447778888753
No 251
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.24 E-value=3 Score=39.88 Aligned_cols=394 Identities=15% Similarity=0.139 Sum_probs=209.9
Q ss_pred hHHHHHHHH--HhcCChhHHHHHHHHHHHC--CCC------------CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 041458 100 QATNLLYDL--CKANKMKKAIKVMEMMVSS--GII------------PDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYG 163 (568)
Q Consensus 100 ~~~~l~~~~--~~~~~~~~A~~~~~~~~~~--~~~------------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 163 (568)
.|-.+..++ -+.+.+..|++.+.....+ +.. +|...-+..++++...|++.+++.+++++...=
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 344454443 4788999999998877665 221 122233556778899999999999998887543
Q ss_pred ----CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 041458 164 ----YPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK---GLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKP 236 (568)
Q Consensus 164 ----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (568)
...+..+|+.++-.+.+. .|-++++. .+-|| .|. ++-.|.+.= ..++...-..+-|
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd--yYe-milfY~kki------~~~d~~~Y~k~~p 221 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD--YYE-MILFYLKKI------HAFDQRPYEKFIP 221 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH--HHH-HHHHHHHHH------HHHhhchHHhhCc
Confidence 347899999877777653 34444321 22222 232 333332211 1111111111233
Q ss_pred CHhhHHHHHHHHHhc--CChHHHHHHHHHhhhCCCCCChhH-HHHHHHHHHcCCCHHHHHHHHHHhccCCCC----cCHh
Q 041458 237 NLVSYNVLLTGLCKE--GRTEEAIRFFRDLPSKGFEPNVVS-YNILLRSLCMEGRWEEANELLAEMDGGDRS----PTIV 309 (568)
Q Consensus 237 ~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~ 309 (568)
.......++....-. .+..--.+++......-+.|+... ...|...+.+ +.+++..+-+.+....+. .-..
T Consensus 222 eeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~ 299 (549)
T PF07079_consen 222 EEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELID 299 (549)
T ss_pred HHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333333333211 122222333333333334444322 2233333333 455555555544332211 1245
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHH-------HHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCh
Q 041458 310 TYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYN-------PIIARLCS----EGKVDLVVKCLDQMFHRRCKPNE 378 (568)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 378 (568)
++..++....+.++...|.+.+.-+...+ |+...-. .+.+..+. ..+...-+.+++......+....
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ 377 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ 377 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 67778888888888888888887766542 3332211 12222221 11223334455555443322111
Q ss_pred hhH---HHHHHHHhCCC-HHHHHHHHHHHhhCCCCCChhhHHHHH----HHHHh---cCChhHHHHHHHHHHHCCCCCCh
Q 041458 379 GTY---NGLAMLCGVGK-VQEAFAIIQSLGNKQNSSPQEFYKYVI----TSLCR---KGKTYQAFQLLYEMTKYGFTPDS 447 (568)
Q Consensus 379 ~~~---~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~~~~~~~~p~~ 447 (568)
..- .....+-+.|. -+.|+.+++.+.+-... |..+-|.+. .+|.+ ...+.+-+.+-+-..+.|+.|-.
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~ 456 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT 456 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence 111 11334445555 77888888877664322 333333221 22221 22333444444445567777643
Q ss_pred h----hHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 041458 448 Y----TYSSLIRG--LCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYT 521 (568)
Q Consensus 448 ~----~~~~l~~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 521 (568)
+ .-|.|.++ +...|++.++.-+-.-..+ +.|++.+|..+.-++....++++|..+++.+ +|+..+++
T Consensus 457 i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~d 529 (549)
T PF07079_consen 457 ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRD 529 (549)
T ss_pred ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHH
Confidence 3 33444444 4568999998877666665 5789999999999999999999999999875 67777665
Q ss_pred H
Q 041458 522 I 522 (568)
Q Consensus 522 ~ 522 (568)
.
T Consensus 530 s 530 (549)
T PF07079_consen 530 S 530 (549)
T ss_pred H
Confidence 4
No 252
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.23 E-value=3.6 Score=40.83 Aligned_cols=389 Identities=11% Similarity=0.039 Sum_probs=216.7
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041458 132 DASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLE 211 (568)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 211 (568)
+...|+.+|.---...+++.+..+++.+... .|.----|......=.+.|..+.+.++|++-++. ++.....|.....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 4556666665444444556777778777753 3323335666666777889999999999998864 5667777777666
Q ss_pred HHH-HcCCHHHHHHHHHHHHHc-CCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHH---c
Q 041458 212 AAY-KERGVHAAMKLLDDIIAK-GGK-PNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLC---M 285 (568)
Q Consensus 212 ~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~ 285 (568)
.+. ..|+.+...+.|+..+.. |.. -+...|...|..-..++++.....+++++.+. ....++..-.-|. +
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHh
Confidence 554 468888888999888775 221 24556888888888899999999999998875 2223333222221 1
Q ss_pred C------CCHHHHHHHHHHhccC----CCCcCHhhHH------------------HH-------HHHHHhcCChHHHHHH
Q 041458 286 E------GRWEEANELLAEMDGG----DRSPTIVTYN------------------IL-------IGSLAYHGKTDHALKV 330 (568)
Q Consensus 286 ~------g~~~~a~~~~~~~~~~----~~~~~~~~~~------------------~l-------~~~~~~~g~~~~a~~~ 330 (568)
. -..+++.++-...... ...+....+. .+ -.++.......+....
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 1 1233333222222110 0000011111 11 1122222223333333
Q ss_pred HHHHHHC---CCC----CCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHH
Q 041458 331 LDEMVKG---RFR----PSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSL 403 (568)
Q Consensus 331 ~~~~~~~---~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 403 (568)
|+.-.+. .++ ++..+|...+.--...|+.+.+.-++++..----.-+......+......|+.+-|..++...
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~ 357 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARA 357 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhh
Confidence 4333332 112 234567777777777888888887777765432233444444444444557777777777666
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCC
Q 041458 404 GNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSY-TYSSLIRGLCMEGLIEEAL---EIFVVMEEYDYK 479 (568)
Q Consensus 404 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~---~~~~~m~~~~~~ 479 (568)
.+-..+....+--.-....-..|+...|..+++...+. . |+.+ .-..-+....+.|..+.+. +++....+ |-.
T Consensus 358 ~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~ 434 (577)
T KOG1258|consen 358 CKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKE 434 (577)
T ss_pred hhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-ccc
Confidence 55443322222111112223456888888888887765 2 4432 2223334455667777666 33332222 111
Q ss_pred CChhhHHHHHHH-----HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041458 480 PDVDNFNALLLG-----LCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQD 531 (568)
Q Consensus 480 p~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 531 (568)
+......+.-- +.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 435 -~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 435 -NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred -CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 33333333322 23356778888888888875 5667777777777766655
No 253
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.99 E-value=3.8 Score=39.74 Aligned_cols=99 Identities=11% Similarity=0.045 Sum_probs=68.4
Q ss_pred CCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH---HccCChHHHHHHHHHHHHCCCCCCHH
Q 041458 443 FTPDSYTY-SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL---CKSRRTDLSLEVFQMMIEKGQMPNET 518 (568)
Q Consensus 443 ~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~p~~~ 518 (568)
..|+..|+ +.++.-+.+.|-+.+|...+..+... ++|+...|..+|..- ..+| ..-+.++++.|... ...|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~-fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE-FGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH-hCCChH
Confidence 35566555 56677777888888888888888765 455777777777532 2223 67778888888764 236778
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 519 TYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
.|.-.+.-=..+|..+.+-.++.++.
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHH
Confidence 88877777777888877776665544
No 254
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.93 E-value=6.7 Score=42.38 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=23.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041458 419 ITSLCRKGKTYQAFQLLYEMTKYGFTPDSY--TYSSLIRGLCMEGLIEEALEIFVVME 474 (568)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~ 474 (568)
+.+|..+|++.+|+.+..++.. .-|.. +-..|+.-+...++.-+|-++..+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 3444455555555555544431 11111 11344444555555555555544433
No 255
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.93 E-value=0.21 Score=43.97 Aligned_cols=105 Identities=14% Similarity=0.133 Sum_probs=51.0
Q ss_pred CCCHHhHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHH
Q 041458 95 KPDVVQATNLLYDLCK-----ANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTV 169 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 169 (568)
+.|-.+|...+..+.. .+.++--...+..|.+-|+..|..+|+.|++.+-+..- .|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-
Confidence 4456666666655532 23444444455555555665566666655554433211 1111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 041458 170 TYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERG 218 (568)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 218 (568)
.+....-.|- .+-+-+++++++|...|+.||..+-..++.++.+.+-
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111111 1223455666666666666666666666666655543
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=2.3 Score=36.99 Aligned_cols=56 Identities=13% Similarity=0.044 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHccCChHHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEY---DYKPDVDNFNALLLGLCKSRRTDLSLEVF 505 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 505 (568)
.|.+.|-.+....++..|.+.++.-.+. .-.-+..+...|+.+| ..|+.+++.+++
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3555566666677777777777763321 1122555666677665 456666665554
No 257
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.87 E-value=0.23 Score=43.79 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=60.1
Q ss_pred ChhhHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----------------CHHHHHHH
Q 041458 411 PQEFYKYVITSLCR-----KGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEG----------------LIEEALEI 469 (568)
Q Consensus 411 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----------------~~~~a~~~ 469 (568)
|..+|-..+..+.. .+.++--...++.|.+.|+.-|..+|+.|++.+-+.. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44455555555543 2455555566777788888888888888887765432 22346778
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 041458 470 FVVMEEYDYKPDVDNFNALLLGLCKSRRT 498 (568)
Q Consensus 470 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 498 (568)
+++|..+|+.||.++-..+++++++.+..
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 88888888888888888888888777653
No 258
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.81 E-value=0.58 Score=41.47 Aligned_cols=97 Identities=24% Similarity=0.266 Sum_probs=64.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC-hhhHHHHH
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP--DSYTYSSLIRGLCMEGLIEEALEIFVVMEE-YDYKPD-VDNFNALL 489 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~p~-~~~~~~li 489 (568)
.|+.-+. +.+.|++.+|...|...++....- ....+--|..++...|++++|..+|..+.+ .+-.|. ++.+-.+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3554443 345566777777777777642110 122344567788888888888888888774 322222 36677778
Q ss_pred HHHHccCChHHHHHHHHHHHHC
Q 041458 490 LGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
....+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888888888888888888875
No 259
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.73 E-value=1.5 Score=33.98 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=24.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 041458 453 LIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKG 512 (568)
Q Consensus 453 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 512 (568)
-+......|.-++-.+++..+.+ .-.+++...-.+..+|.+.|+..++.+++.++-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444444444444444444432 113344444444455555555555555555544444
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.67 E-value=3.5 Score=37.89 Aligned_cols=19 Identities=5% Similarity=-0.118 Sum_probs=12.2
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 041458 526 GIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~ 544 (568)
.+.+.++++.|.++++-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3455677777777776443
No 261
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.66 E-value=1 Score=35.77 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=47.5
Q ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 041458 379 GTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSP--QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRG 456 (568)
Q Consensus 379 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 456 (568)
..|.......+.|++++|.+.|+.+..+.+... ...--.++.+|.+.+++++|...+++.++....--.+-|...+.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 334445555566667777777766666544322 234445667777777777777777777776433333455555555
Q ss_pred HHh
Q 041458 457 LCM 459 (568)
Q Consensus 457 ~~~ 459 (568)
++.
T Consensus 92 L~~ 94 (142)
T PF13512_consen 92 LSY 94 (142)
T ss_pred HHH
Confidence 543
No 262
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.61 E-value=3.7 Score=37.90 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhCCCC---CChhhHHHHHHHHHhcCC----hhHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcC--
Q 041458 393 VQEAFAIIQSLGNKQNS---SPQEFYKYVITSLCRKGK----TYQAFQLLYEMTKYGFTPDSY--TYSSLIRGLCMEG-- 461 (568)
Q Consensus 393 ~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~----~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g-- 461 (568)
...|..+|+.|++.++. ++...+..++.. ..++ .+.+..+|+.+.+.|+..+.. ....++..+....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 44566666666665542 233444444433 2222 245667777777777665432 2223332222211
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 462 LIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 462 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
.+.++.++++.+.+.|+++....|..+.-..
T Consensus 197 ~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 197 KVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 1457888888888888888887776655433
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.54 E-value=1.8 Score=34.37 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=58.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 041458 420 TSLCRKGKTYQAFQLLYEMTKYGFT--PDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRR 497 (568)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 497 (568)
....+.|++++|.+.|+.+...-.. -....-..|+.+|.+.+++++|...+++.++..+.--..-|...+.+++.-..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 3344566777777777666654111 01233455666666777777777777666654333222334444444332221
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHH
Q 041458 498 TDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAV 554 (568)
Q Consensus 498 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 554 (568)
.+ ..++.+.. ..-| .+....|..-|+++++..|.+.-+.
T Consensus 98 ~~---~~~~~~~~--~drD-------------~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 98 DE---GSLQSFFR--SDRD-------------PTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred hh---hHHhhhcc--cccC-------------cHHHHHHHHHHHHHHHHCcCChhHH
Confidence 11 11112111 1111 1224577777888888777765443
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=1.1 Score=40.69 Aligned_cols=154 Identities=11% Similarity=0.017 Sum_probs=95.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcH----HHHHHHHHHHHhcCC
Q 041458 108 LCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNT----VTYNSLVRGLCMLGN 183 (568)
Q Consensus 108 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~ 183 (568)
...+|++.+|-..++++.+.- +.|..++...=.+|...|+.+.-...++++... ..++. .+-..+.-++..+|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 345677777777777777653 346667777777788888887777777777643 12333 222334445557788
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHhcCChHHHHHH
Q 041458 184 LNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKP---NLVSYNVLLTGLCKEGRTEEAIRF 260 (568)
Q Consensus 184 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~ 260 (568)
+++|.+.-++..+.+ +.|...-.++...+--.+++.++.+...+-...--.. -..-|=...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 888888888777664 3366666666677777778887777665543221000 111222233355666888888888
Q ss_pred HHHh
Q 041458 261 FRDL 264 (568)
Q Consensus 261 ~~~~ 264 (568)
|+.-
T Consensus 270 yD~e 273 (491)
T KOG2610|consen 270 YDRE 273 (491)
T ss_pred HHHH
Confidence 8753
No 265
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.37 E-value=3.4 Score=36.43 Aligned_cols=189 Identities=21% Similarity=0.110 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHhccCCCC-cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHhcCCHHHHHH
Q 041458 287 GRWEEANELLAEMDGGDRS-PTIVTYNILIGSLAYHGKTDHALKVLDEMVKG-RFRPSAASYNPIIARLCSEGKVDLVVK 364 (568)
Q Consensus 287 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~ 364 (568)
+....+...+......... .....+......+...+....+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555554443211 12455566666666777777776666665542 112233444445555556666666666
Q ss_pred HHHHHhhCCCCCChhhHHHHH-HHHhCCCHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 041458 365 CLDQMFHRRCKPNEGTYNGLA-MLCGVGKVQEAFAIIQSLGNKQN--SSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKY 441 (568)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 441 (568)
.+.........+......... .+...|+.+.|...+........ ......+......+...++.+++...+.+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 666665543333221211122 44555555555555555533111 011122222222233444555555555544443
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041458 442 GFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEE 475 (568)
Q Consensus 442 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 475 (568)
........+..+...+...++++++...+.....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 1110133344444444444445555555544443
No 266
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=1.6 Score=39.68 Aligned_cols=153 Identities=15% Similarity=0.037 Sum_probs=81.4
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhC-CCCCChhhHHH--HHHHHHhcCCh
Q 041458 353 LCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNK-QNSSPQEFYKY--VITSLCRKGKT 428 (568)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~--li~~~~~~g~~ 428 (568)
....|++.+|-..++++++..+ .|...+.. -..+.-.|+.+.-...++++... +...+..+|-. +.-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3445666677667777766532 23333333 34555567766667777766554 22222222222 22334466777
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHccCChHHHHHHH
Q 041458 429 YQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEY---DYKPDVDNFNALLLGLCKSRRTDLSLEVF 505 (568)
Q Consensus 429 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 505 (568)
++|++.-++..+.+ +.|.-.-.++...+--.|+..++.++..+-... +.-.-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777777666543 234445556666666677777777766554321 11111222333333445556777777777
Q ss_pred HH
Q 041458 506 QM 507 (568)
Q Consensus 506 ~~ 507 (568)
++
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 54
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.18 E-value=2.7 Score=34.48 Aligned_cols=120 Identities=16% Similarity=0.213 Sum_probs=53.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCcccHH--HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh----hHHHHHHHHhCCC
Q 041458 319 AYHGKTDHALKVLDEMVKGRFRPSAASYN--PIIARLCSEGKVDLVVKCLDQMFHRRCKPNEG----TYNGLAMLCGVGK 392 (568)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 392 (568)
.+.++.++|+.-|.++.+.|... ..+.. .+.....+.|+...|...|+++-.....|-.. .......+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~-YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGS-YPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 44556666666666666554331 11111 11223445566666666666665443333222 1122333444455
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 393 VQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMT 439 (568)
Q Consensus 393 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 439 (568)
+++.....+.+...+.+.....-..|.-+-.+.|++.+|.+.|..+.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 55444444444333322222223333334444455555555554443
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=8.2 Score=40.07 Aligned_cols=177 Identities=20% Similarity=0.205 Sum_probs=112.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH----HHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYT----YLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
...-+..+++...++.|+.+-+. .+. |..+.. .....+.+.|++++|...+-+-... +.|. .+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 34556667777777777766443 332 333333 3334455788999998887665533 2222 3456
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 177 GLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
-|....+..+-..+++.+.+.|.. +...-+.|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 666666777777788888888766 66666788999999999888766665443 2211 1124456677777777888
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhc
Q 041458 257 AIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMD 300 (568)
Q Consensus 257 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 300 (568)
|..+-..... +......+ +-..+++++|.+.+..+.
T Consensus 482 a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 8777655432 23333333 445688999999888764
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.05 E-value=0.22 Score=30.48 Aligned_cols=28 Identities=11% Similarity=0.086 Sum_probs=17.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
+|..+...|...|++++|+++++++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555566666666666666666666654
No 270
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.05 E-value=2.6 Score=33.90 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=19.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 041458 138 YLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCML 181 (568)
Q Consensus 138 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 181 (568)
.++..+...+........++.+...+ +.+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444444555555555444443 23444444555555443
No 271
>PRK11906 transcriptional regulator; Provisional
Probab=93.88 E-value=4.9 Score=38.93 Aligned_cols=162 Identities=9% Similarity=0.023 Sum_probs=103.6
Q ss_pred ccH--HHHHHHHHhc-----CCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHh-----------CCCHHHHHHHHHHHh
Q 041458 344 ASY--NPIIARLCSE-----GKVDLVVKCLDQMFHR-RCKPNEGTYNGLAMLCG-----------VGKVQEAFAIIQSLG 404 (568)
Q Consensus 344 ~~~--~~li~~~~~~-----~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~~ 404 (568)
..| ..++.+.... ...+.|..+|.+.... ...|+-..-......|. .....+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 5555554432 2346788889988832 33444333333222221 234566677777777
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCh
Q 041458 405 NKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK-PDV 482 (568)
Q Consensus 405 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~ 482 (568)
+.+.. |......+..+....++.+.|...|++.... .|| ..+|......+..+|+.++|.+.+++..+..+. .-.
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 76555 6677777777778888899999999998875 555 556777777788899999999999997765322 122
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHH
Q 041458 483 DNFNALLLGLCKSRRTDLSLEVFQMMI 509 (568)
Q Consensus 483 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 509 (568)
......++.|+.. ..++|++++-+-.
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~~~ 434 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhhcc
Confidence 3333445566665 4677877765433
No 272
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.80 E-value=9.8 Score=39.67 Aligned_cols=190 Identities=12% Similarity=0.035 Sum_probs=93.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCC-CC-------hh-hHHHHHHHHhCCCHHHHHHHHH--------HHhhCCCCCChhhHHH
Q 041458 355 SEGKVDLVVKCLDQMFHRRCK-PN-------EG-TYNGLAMLCGVGKVQEAFAIIQ--------SLGNKQNSSPQEFYKY 417 (568)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~-~~-------~~-~~~~~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~ 417 (568)
-.+++..+.+.++.+...... |+ .. .|-....+-..|+.+.|...|. .....+...+...+..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 468888899998888764221 11 11 1111334445799999999997 4444544444433322
Q ss_pred H----HHHHHhcCChhH--HHHHHHHHHHC-CCCC--ChhhHHHH-HHHHHhcC--CHHHHHHHHHHHHh-C--CCCCC-
Q 041458 418 V----ITSLCRKGKTYQ--AFQLLYEMTKY-GFTP--DSYTYSSL-IRGLCMEG--LIEEALEIFVVMEE-Y--DYKPD- 481 (568)
Q Consensus 418 l----i~~~~~~g~~~~--A~~~~~~~~~~-~~~p--~~~~~~~l-~~~~~~~g--~~~~a~~~~~~m~~-~--~~~p~- 481 (568)
+ |.-+.......+ +.++++.+... .-.| +..++..+ +.++...- ...++...+....+ . ....+
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 1 111222222333 66777665432 1122 22233333 33333221 12344444433321 1 11111
Q ss_pred --hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCC-C--CHHHHHH-----HHHHHHhcCChhHHHHHHHHHHH
Q 041458 482 --VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQM-P--NETTYTI-----LVEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 482 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p--~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~ 545 (568)
..+++.+...+. .|+..+..+........-.+ | ....|.. +...+...|+.++|.....+...
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 122333333333 67877766665544331111 2 3455633 33457778999999988877653
No 273
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.78 E-value=3.3 Score=34.17 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=15.3
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCChH
Q 041458 157 EKMEDYGYPTNTVTYNSLVRGLCMLGNLN 185 (568)
Q Consensus 157 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 185 (568)
..+.+.+++|+...+..++..+.+.|++.
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33444455555555555555555555543
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.25 E-value=4 Score=33.50 Aligned_cols=61 Identities=7% Similarity=0.003 Sum_probs=29.0
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHH
Q 041458 492 LCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 492 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 552 (568)
+...|.+++.....+-+...+-+--...-..|.-+-.+.|++..|.++|+.+......|..
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprn 202 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRN 202 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHH
Confidence 3445555555555544443332222333334444555556666666666555553333333
No 275
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.25 E-value=11 Score=38.75 Aligned_cols=151 Identities=14% Similarity=0.142 Sum_probs=78.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 041458 175 VRGLCMLGNLNQSLQFLDRLIQKGLVP---NAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKE 251 (568)
Q Consensus 175 i~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 251 (568)
++-+.+.+.+++|+++.+.... ..| -...+...|..+.-.|++++|-...-.|... +..-|.--+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 4455666677777766655432 233 2345566677777777777777777777655 555566555555555
Q ss_pred CChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccC---------CC-------CcCHhhHHHHH
Q 041458 252 GRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGG---------DR-------SPTIVTYNILI 315 (568)
Q Consensus 252 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~-------~~~~~~~~~l~ 315 (568)
++......+ +.......+...|..++..+.. .+...-.++..+.... .. ..+...-..|+
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 554433222 2222222344556666655554 2222222222221100 00 11122233467
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 041458 316 GSLAYHGKTDHALKVLDEMV 335 (568)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~ 335 (568)
..|...+++.+|+.++-...
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHccChHHHHHHHHhcc
Confidence 77777777777777765554
No 276
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.17 E-value=5.6 Score=34.97 Aligned_cols=189 Identities=20% Similarity=0.160 Sum_probs=92.6
Q ss_pred CChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCChHHHHH
Q 041458 112 NKMKKAIKVMEMMVSSGIIP-DASSYTYLVNCLCKKGNVGYAMQLVEKMEDY-GYPTNTVTYNSLVRGLCMLGNLNQSLQ 189 (568)
Q Consensus 112 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~ 189 (568)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555555555555442211 2345555666666667777776666665531 123344555556666666666667777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHH-HHHHcCCHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041458 190 FLDRLIQKGLVPNAFTYSFLLE-AAYKERGVHAAMKLLDDIIAKGG--KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPS 266 (568)
Q Consensus 190 ~~~~m~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 266 (568)
.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 766666543222 111222222 45566666666666666543211 01122222223334445555555555555544
Q ss_pred CCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 041458 267 KGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDG 301 (568)
Q Consensus 267 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 301 (568)
.........+..+...+...++++.+...+.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 31111233444444455555555555555555443
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.13 E-value=1.2 Score=40.12 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE-----KGQMPNETTYTIL 523 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~l 523 (568)
++..++..+...|+++.+.+.++++....+- +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4455666666666666666666666655433 666666677777777776666666666554 3666666666555
Q ss_pred HHH
Q 041458 524 VEG 526 (568)
Q Consensus 524 l~~ 526 (568)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 554
No 278
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.09 E-value=5.4 Score=36.85 Aligned_cols=130 Identities=15% Similarity=0.209 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh--c----CChhHHHHHHHHHHHCCCC---CCHhhHHHHHHHHHhcCCh
Q 041458 79 LNDAFLQLERMVSKGHKPDVVQATNLLYDLCK--A----NKMKKAIKVMEMMVSSGII---PDASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 79 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 149 (568)
+.+.+.+++.|.+.|++.+..++-.-...... . ....+|..+|+.|++..+. ++...+..++.. ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556666777777777666555442222211 1 2345577777777765421 333444444433 22222
Q ss_pred ----hhHHHHHHHHHhCCCCCcHH-HHHHHHHHHHhc-CC--hHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 041458 150 ----GYAMQLVEKMEDYGYPTNTV-TYNSLVRGLCML-GN--LNQSLQFLDRLIQKGLVPNAFTYSFLL 210 (568)
Q Consensus 150 ----~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~-g~--~~~a~~~~~~m~~~~~~~~~~~~~~li 210 (568)
+.+.+.|+.+.+.|+..+.. -+.+-+-++... .+ ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 34555666666655544322 222222222211 11 235566666666666665555554443
No 279
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.09 E-value=7.1 Score=35.91 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=25.3
Q ss_pred ccCChHHHHHHHHHHHhCC--CCCCHH------hHHHHHHHHHhcC-ChhHHHHHHHHHH
Q 041458 75 RDHKLNDAFLQLERMVSKG--HKPDVV------QATNLLYDLCKAN-KMKKAIKVMEMMV 125 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~--~~~~~~------~~~~l~~~~~~~~-~~~~A~~~~~~~~ 125 (568)
+.|+++.|...+.+..... ..|+.. .|+.-. .....+ +++.|..++++..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~-~l~~~~~~~~~a~~wL~~a~ 63 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGK-SLLSKKDKYEEAVKWLQRAY 63 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHH-HHHHcCCChHHHHHHHHHHH
Confidence 5677777877777664432 122211 122222 223344 6666666665543
No 280
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.06 E-value=4.2 Score=37.66 Aligned_cols=125 Identities=13% Similarity=0.078 Sum_probs=54.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCChh-hH--
Q 041458 418 VITSLCRKGKTYQAFQLLYEMTKYGFT-----PDSYTYSSLIRGLCMEGLIEEALEIFVVME----EYDYKPDVD-NF-- 485 (568)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~~~~p~~~-~~-- 485 (568)
+..++...+.++++++.|+...+.... ....++..|.+.|....|+++|.-+..+.. ..++. |.. -|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~ 206 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRA 206 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHH
Confidence 344444445555555555544432100 112345555555555556555554444332 12222 111 11
Q ss_pred ---HHHHHHHHccCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 486 ---NALLLGLCKSRRTDLSLEVFQMMIE----KGQMP-NETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 486 ---~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
..|.-++...|+.-.|.+.-++..+ .|-.+ -......+.+.|...|+.|.|..-+++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1223344445555555544444433 22222 1233334555555566655555554443
No 281
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.05 E-value=7.1 Score=40.01 Aligned_cols=119 Identities=15% Similarity=0.081 Sum_probs=54.5
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--ccCChHHHHH
Q 041458 427 KTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM-EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLC--KSRRTDLSLE 503 (568)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~ 503 (568)
+.+.|..++.+.-+.|. |+.......+.-... ..+...|.++|....+.|.. ....+.++..... -..+.+.|..
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 44556666666665542 343333322222222 23456666666666665533 2222222211111 2235566666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 504 VFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 504 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
++++..+.| .|...--...+..+.. +.++.+.-.+..+.+.+..
T Consensus 386 ~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 386 YYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 666666665 2222222222223333 5555555555555555544
No 282
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.83 E-value=3.4 Score=38.21 Aligned_cols=200 Identities=13% Similarity=0.089 Sum_probs=108.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHH----HHHHhCC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC---Hhh
Q 041458 135 SYTYLVNCLCKKGNVGYAMQLV----EKMEDYG-YPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK-GLVPN---AFT 205 (568)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~~----~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~---~~~ 205 (568)
++..+..+.++.|.+++++..- +...+.. -..-...|..+.+++-+.-++.+++.+-..-... |..|. -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4455555666666665554321 1111100 0011234455555555555555555554443322 22221 122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh----CCCCCCh---
Q 041458 206 YSFLLEAAYKERGVHAAMKLLDDIIAKGG-----KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPS----KGFEPNV--- 273 (568)
Q Consensus 206 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~p~~--- 273 (568)
..++-.+....+.++++++.|+....... .....++..|...|.+..++++|.-+..+..+ .++. |.
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~k 203 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLK 203 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHH
Confidence 33455566667778888888877655311 12235677788888888888888766655432 1221 21
Q ss_pred ---hHHHHHHHHHHcCCCHHHHHHHHHHhcc----CCCCc-CHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 041458 274 ---VSYNILLRSLCMEGRWEEANELLAEMDG----GDRSP-TIVTYNILIGSLAYHGKTDHALKVLDEMV 335 (568)
Q Consensus 274 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (568)
.....|.-++...|...+|.+.-++..+ .|-.+ -......+.+.|...|+.+.|..-|++..
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1123345567777888777777776532 23111 23344567788888899998888777654
No 283
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.83 E-value=14 Score=38.58 Aligned_cols=429 Identities=15% Similarity=0.101 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHh-CCCCC--CHHhHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCHh-----hHHHHHHHHHhcCChh
Q 041458 80 NDAFLQLERMVS-KGHKP--DVVQATNLLYDLC-KANKMKKAIKVMEMMVSSGIIPDAS-----SYTYLVNCLCKKGNVG 150 (568)
Q Consensus 80 ~~A~~~~~~~~~-~~~~~--~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~ 150 (568)
.-|+..++.+.+ ..++| +..++..+...+. ...+++.|...+++.....-.++.. ....++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 346667776663 22333 2344555666665 6789999999998775432222211 2234456666666555
Q ss_pred hHHHHHHHHHhC----CCCCcHHHHHHH-HHHHHhcCChHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHH--HcCCHH
Q 041458 151 YAMQLVEKMEDY----GYPTNTVTYNSL-VRGLCMLGNLNQSLQFLDRLIQKG---LVPNAFTYSFLLEAAY--KERGVH 220 (568)
Q Consensus 151 ~a~~~~~~~~~~----~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~--~~~~~~ 220 (568)
|.+..++..+. +..+-...|.-+ +..+...++...|.+.++.+...- ..|-..++..++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888776543 122223333333 333334478999999998876532 2334444555555544 345566
Q ss_pred HHHHHHHHHHHcCC---------CCCHhhHHHHHHHH--HhcCChHHHHHHHHHhhh-------CC----------C--C
Q 041458 221 AAMKLLDDIIAKGG---------KPNLVSYNVLLTGL--CKEGRTEEAIRFFRDLPS-------KG----------F--E 270 (568)
Q Consensus 221 ~a~~~~~~~~~~~~---------~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~-------~~----------~--~ 270 (568)
.+.+..+++..... .|-..+|..+++.+ ...|+++.+...++++.+ .. + .
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~ 276 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN 276 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence 67777776643211 23456666676655 456776666666554422 10 0 0
Q ss_pred -----------CChhHH---------HHHHHH--HHcCCCHHHHHHHH-------HHhc-cCCCCcC--------HhhHH
Q 041458 271 -----------PNVVSY---------NILLRS--LCMEGRWEEANELL-------AEMD-GGDRSPT--------IVTYN 312 (568)
Q Consensus 271 -----------p~~~~~---------~~l~~~--~~~~g~~~~a~~~~-------~~~~-~~~~~~~--------~~~~~ 312 (568)
+....| .-++.+ ++..+..++|.+.+ ++.. .....+. ...|.
T Consensus 277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~ 356 (608)
T PF10345_consen 277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL 356 (608)
T ss_pred cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence 111111 112222 23334443554444 4444 1111111 12222
Q ss_pred HHHH---------HHHhcCChHHHHHHHHHHHHCCC-CCC-----cccHHHHHHH--HHhcCCHHHHHHHHH--------
Q 041458 313 ILIG---------SLAYHGKTDHALKVLDEMVKGRF-RPS-----AASYNPIIAR--LCSEGKVDLVVKCLD-------- 367 (568)
Q Consensus 313 ~l~~---------~~~~~g~~~~a~~~~~~~~~~~~-~~~-----~~~~~~li~~--~~~~~~~~~a~~~~~-------- 367 (568)
..+. ..+-.+++..|...++.+.+..- .|+ ...+..++.+ +-..|+.+.|...|.
T Consensus 357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~ 436 (608)
T PF10345_consen 357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCE 436 (608)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhh
Confidence 2222 22356889899999988875421 111 1222233332 335699999999997
Q ss_pred HHhhCCCCCChhhHHHH---HHHHh--CCCHHH--HHHHHHHHhhC---CCCCChhhHHHHH-HHHHhcCC--hhHHHHH
Q 041458 368 QMFHRRCKPNEGTYNGL---AMLCG--VGKVQE--AFAIIQSLGNK---QNSSPQEFYKYVI-TSLCRKGK--TYQAFQL 434 (568)
Q Consensus 368 ~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~--a~~~~~~~~~~---~~~~~~~~~~~li-~~~~~~g~--~~~A~~~ 434 (568)
.....+...+...+..+ ..+.. .....+ +..+++.+... .+..+..++..++ .++..... ..++...
T Consensus 437 ~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~ 516 (608)
T PF10345_consen 437 AANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRH 516 (608)
T ss_pred hhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHH
Confidence 44455555555555442 22222 222333 67777766553 2222333444443 33332211 1244444
Q ss_pred HHHHHH-C--CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCChhhHH-----HHHHHHHccCChHH
Q 041458 435 LYEMTK-Y--GFTPD---SYTYSSLIRGLCMEGLIEEALEIFVVMEE---YDYKPDVDNFN-----ALLLGLCKSRRTDL 500 (568)
Q Consensus 435 ~~~~~~-~--~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~-----~li~~~~~~g~~~~ 500 (568)
+.+..+ . ....+ ..+++.+...+. .|+..+..+....... ...+-....|. .+.+.+-..|+.++
T Consensus 517 l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~k 595 (608)
T PF10345_consen 517 LQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDK 595 (608)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHH
Confidence 433222 1 01111 122333333333 6888876666654332 11122344553 34445778899999
Q ss_pred HHHHHHHHHH
Q 041458 501 SLEVFQMMIE 510 (568)
Q Consensus 501 a~~~~~~m~~ 510 (568)
|.....+...
T Consensus 596 a~~~~~~~~~ 605 (608)
T PF10345_consen 596 AEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHH
Confidence 9998877653
No 284
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.61 E-value=1.4 Score=39.82 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041458 136 YTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLI 195 (568)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 195 (568)
+..++..+...|+.+.+...++++... -|-+...|..++.+|.+.|+...|+..|+.+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344444444445555555555544443 12344445555555555555555555544443
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.58 E-value=2 Score=36.19 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041458 170 TYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPN--AFTYSFLLEAAYKERGVHAAMKLLDDI 229 (568)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~ 229 (568)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344555555555555555555555554322221 223344455555555555555554444
No 286
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.47 E-value=28 Score=41.18 Aligned_cols=151 Identities=12% Similarity=0.085 Sum_probs=82.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHc
Q 041458 208 FLLEAAYKERGVHAAMKLLDDIIAKGG--KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCM 285 (568)
Q Consensus 208 ~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 285 (568)
.+..+-.+++.+..|.-.++.-..... .-....|-.+...|...+++|...-+...-.. +... ..-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl-~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSL-YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccH-HHHHHHHHh
Confidence 344455667777777777776311100 11122334444477888888777776653111 2222 233445666
Q ss_pred CCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH-HHHHHhcCCHHHHHH
Q 041458 286 EGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPI-IARLCSEGKVDLVVK 364 (568)
Q Consensus 286 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~ 364 (568)
.|++..|...|+.+...+ ++...+++.++......|.++...-..+...... .+....|+.+ +.+--+.+++|....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 788888888888887764 4446667777776667777776666554444321 1122222222 233355666665554
Q ss_pred HH
Q 041458 365 CL 366 (568)
Q Consensus 365 ~~ 366 (568)
.+
T Consensus 1540 ~l 1541 (2382)
T KOG0890|consen 1540 YL 1541 (2382)
T ss_pred hh
Confidence 43
No 287
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.31 E-value=15 Score=37.88 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=39.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 041458 106 YDLCKANKMKKAIKVMEMMVSSGIIP---DASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLG 182 (568)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 182 (568)
.-+.+.+.+++|+..-+..... .| -...+..+|..+...|++++|-...-.|... +..-|...+..+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 3344555666666555443322 22 2234556666666666666666666666542 5555555555555555
Q ss_pred ChH
Q 041458 183 NLN 185 (568)
Q Consensus 183 ~~~ 185 (568)
+..
T Consensus 438 ~l~ 440 (846)
T KOG2066|consen 438 QLT 440 (846)
T ss_pred ccc
Confidence 443
No 288
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.18 E-value=1.4 Score=31.93 Aligned_cols=44 Identities=7% Similarity=0.190 Sum_probs=22.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 501 SLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 501 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
+.+-++.+...++.|++.+..+.+++|++.+++..|.++++-+.
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555555555444
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.10 E-value=11 Score=35.93 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=43.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP---DSYTYSSLIRGLCMEGLIEEALEIFVVMEE 475 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 475 (568)
...+|..++..+.+.|.++.|...+.++...+... .+.....-+......|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777888888888888888888877643211 233344445566677888888888877765
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.03 E-value=5.8 Score=32.35 Aligned_cols=53 Identities=21% Similarity=0.099 Sum_probs=32.1
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 422 LCRKGKTYQAFQLLYEMTKYGFTPDSYTY-SSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 422 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
-.+.++.+++..++..+.-. .|..... ..-...+...|++.+|..+|+.+.+.
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34567777777777777653 4443322 22233456677777777777776654
No 291
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.00 E-value=3.3 Score=30.52 Aligned_cols=49 Identities=6% Similarity=0.099 Sum_probs=25.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 501 SLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 501 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
..+-++.+...++.|++.+..+.+++|++.+++..|.++++-+..+-..
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~ 77 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN 77 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC
Confidence 4444445555555666666666666666666666666666665544443
No 292
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.81 E-value=6.5 Score=32.49 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=71.4
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 041458 189 QFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKG 268 (568)
Q Consensus 189 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 268 (568)
+.++.+.+.++.|+...+..+++.+.+.|.+... ..++..++-+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 4455556667777777888888888887775543 33444445455544443332222 2223333333333322
Q ss_pred CCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 269 FEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 269 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
=...+..++..+...|++-+|.++.+..... +......++.+..+.++...=..+|+-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1113555666777777777777777665322 222334455555566655544444444443
No 293
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.78 E-value=0.59 Score=26.32 Aligned_cols=30 Identities=10% Similarity=0.025 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 519 TYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
.|..+...+...|++++|++.+++.++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 344555555666666666666666655544
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.71 E-value=1.7 Score=36.54 Aligned_cols=60 Identities=17% Similarity=0.064 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 041458 311 YNILIGSLAYHGKTDHALKVLDEMVKGRFRP--SAASYNPIIARLCSEGKVDLVVKCLDQMF 370 (568)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 370 (568)
+..+...|.+.|+.+.|.+.|.++.+....+ -...+-.+|......+++..+...+.++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444445555555555555555544432111 11223334444444455555444444443
No 295
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.56 E-value=3.8 Score=37.14 Aligned_cols=50 Identities=16% Similarity=0.374 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 498 TDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 498 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
+++++.++..=++.|+-||..++..+++.+.+.+++.+|.++.-.|+...
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555555555555444444444444333
No 296
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.23 E-value=0.54 Score=27.17 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 519 TYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
+|..|...|.+.|++++|.+++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777744
No 297
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.11 E-value=20 Score=36.80 Aligned_cols=178 Identities=16% Similarity=0.106 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHH-----HHhcCChhhHHHHHHHHHh-------CCCCCcHHHHHHHHHHHHhc
Q 041458 114 MKKAIKVMEMMVSSGIIPDASSYTYLVNC-----LCKKGNVGYAMQLVEKMED-------YGYPTNTVTYNSLVRGLCML 181 (568)
Q Consensus 114 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~ 181 (568)
...|.++++...+.| +...-..+..+ +....+.+.|+..|....+ .| .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456778888777765 33332222222 3355678888888877766 44 333556667777664
Q ss_pred C-----ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH----hc
Q 041458 182 G-----NLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYK-ERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLC----KE 251 (568)
Q Consensus 182 g-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~ 251 (568)
. +.+.|..++...-+.|. |+.......+..... ..+...|.++|...-..|..+ .+-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcC
Confidence 3 56678888888777663 344333322222222 245678888888887776432 2222222221 23
Q ss_pred CChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCC
Q 041458 252 GRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGD 303 (568)
Q Consensus 252 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 303 (568)
.+.+.|..++.+.-++|....... ...+..+.. +..+.+.-.+..+...+
T Consensus 378 r~~~~A~~~~k~aA~~g~~~A~~~-~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNPSAAYL-LGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHccChhhHHH-HHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 367788888888877762221222 222233333 66666666666555544
No 298
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.84 E-value=0.57 Score=27.07 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=19.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHH
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMI 509 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~ 509 (568)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677788888888888888888754
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.72 E-value=0.85 Score=25.75 Aligned_cols=30 Identities=13% Similarity=0.020 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 519 TYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
+|..+...+...|++++|...+++.++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 344444445555555555555555544443
No 300
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.54 E-value=0.021 Score=46.39 Aligned_cols=53 Identities=11% Similarity=0.128 Sum_probs=25.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 041458 140 VNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLD 192 (568)
Q Consensus 140 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (568)
+..+.+.+.+....+.++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444445555555555555544333345555555555555554455544444
No 301
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.44 E-value=11 Score=32.46 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=83.8
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHH
Q 041458 344 ASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNS-SPQEFYKYVITSL 422 (568)
Q Consensus 344 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 422 (568)
.+||.+.--+...|+++.|.+.|+...+..+.-+-...|-...+.-.|++.-|.+-|...-+.++. |-...|-.++.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-- 177 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-- 177 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH--
Confidence 456666556666777777777777777665555555555544455567777777766666555443 22233443332
Q ss_pred HhcCChhHHHHHHH-HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CChhhHHHHHHHHHcc
Q 041458 423 CRKGKTYQAFQLLY-EMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK------PDVDNFNALLLGLCKS 495 (568)
Q Consensus 423 ~~~g~~~~A~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~------p~~~~~~~li~~~~~~ 495 (568)
..-++.+|..-+. +... .|..-|...|-.+.- |.+. ...+++++....-. .=.++|--+..-+...
T Consensus 178 -~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 178 -QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred -hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2335555554433 2222 233344433333321 1111 11223333221000 0135666777778888
Q ss_pred CChHHHHHHHHHHHHC
Q 041458 496 RRTDLSLEVFQMMIEK 511 (568)
Q Consensus 496 g~~~~a~~~~~~m~~~ 511 (568)
|+.++|..+|+-.+..
T Consensus 251 G~~~~A~~LfKLaian 266 (297)
T COG4785 251 GDLDEATALFKLAVAN 266 (297)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 8888888888887764
No 302
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.23 E-value=0.34 Score=27.58 Aligned_cols=15 Identities=13% Similarity=0.002 Sum_probs=5.4
Q ss_pred hHHHHHHHHHccCCh
Q 041458 484 NFNALLLGLCKSRRT 498 (568)
Q Consensus 484 ~~~~li~~~~~~g~~ 498 (568)
.|+.+...|...|++
T Consensus 15 a~~nla~~~~~~g~~ 29 (34)
T PF13431_consen 15 AYNNLANLYLNQGDY 29 (34)
T ss_pred HHHHHHHHHHHCcCH
Confidence 333333333333333
No 303
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.86 E-value=12 Score=32.16 Aligned_cols=160 Identities=18% Similarity=0.069 Sum_probs=77.7
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 041458 308 IVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAML 387 (568)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (568)
+.+||-|.--+...|+++.|.+.|+...+.++.-+-...|.-|. +.-.|++..|.+-+-+.-+..+...-.+.- +..-
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW-LYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLW-LYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHH-HHHH
Confidence 44566666666666777777777776666543322222222222 223566666665555554443221111111 1122
Q ss_pred HhCCCHHHHHHHHH-HHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-------ChhhHHHHHHHHHh
Q 041458 388 CGVGKVQEAFAIIQ-SLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP-------DSYTYSSLIRGLCM 459 (568)
Q Consensus 388 ~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-------~~~~~~~l~~~~~~ 459 (568)
...-++.+|..-+. +.... |..-|...|..|.--.-.+ ..++++++.. -.. =..||-.|..-+..
T Consensus 177 E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 177 EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISE--ETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccH--HHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhc
Confidence 22334444443332 33322 4444554444433211111 1122222221 111 13467778888888
Q ss_pred cCCHHHHHHHHHHHHhC
Q 041458 460 EGLIEEALEIFVVMEEY 476 (568)
Q Consensus 460 ~g~~~~a~~~~~~m~~~ 476 (568)
.|+.++|..+|+-....
T Consensus 250 ~G~~~~A~~LfKLaian 266 (297)
T COG4785 250 LGDLDEATALFKLAVAN 266 (297)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 99999999999887754
No 304
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.76 E-value=2.2 Score=38.98 Aligned_cols=54 Identities=11% Similarity=-0.028 Sum_probs=30.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041458 419 ITSLCRKGKTYQAFQLLYEMTKYGFTP-DSYTYSSLIRGLCMEGLIEEALEIFVVME 474 (568)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 474 (568)
...|.+.|.+++|+..+...+.. .| |.+++..-..+|.+...+..|..--....
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 44556666666666666655542 33 55566666666666665555544444333
No 305
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.07 E-value=0.95 Score=25.53 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=15.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
.|..+..+|...|++++|++.++++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455556666666666666666666655
No 306
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.94 E-value=11 Score=31.87 Aligned_cols=90 Identities=18% Similarity=0.086 Sum_probs=49.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 041458 421 SLCRKGKTYQAFQLLYEMTKYGFTPD----SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSR 496 (568)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 496 (568)
-+.+.|++++|..-|.+.+..-.... ++.|..-..++.+.+.++.|++--.+..+.+.. .......-..+|-+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 46667777777777777666421111 223444444555666666666666555554322 2222333344566666
Q ss_pred ChHHHHHHHHHHHHC
Q 041458 497 RTDLSLEVFQMMIEK 511 (568)
Q Consensus 497 ~~~~a~~~~~~m~~~ 511 (568)
++++|++-++++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 677777777776663
No 307
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.56 E-value=3 Score=39.99 Aligned_cols=137 Identities=16% Similarity=0.125 Sum_probs=88.7
Q ss_pred HHHHHhCCCHHHHHH-HHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 041458 384 LAMLCGVGKVQEAFA-IIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGL 462 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 462 (568)
+......|++..|-+ +|..+......|+.+...+.| +...|+++.+.+.+...... +.....+...++......|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 555556777776654 444555554555555444443 45678888888887765543 33455677788888888888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041458 463 IEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVE 525 (568)
Q Consensus 463 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 525 (568)
.++|...-+.|....++ +++............|-++++.-.|++....+ +|...-|...++
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~-~~~~~g~v~~~~ 433 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN-PETQSGWVNFLS 433 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC-Chhcccceeeec
Confidence 88888888888766666 55555554444556677888888888887653 444444444443
No 308
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.94 E-value=36 Score=35.20 Aligned_cols=176 Identities=13% Similarity=0.070 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHhhHHHHHHHHHhc---------CC-
Q 041458 81 DAFLQLERMVSKGHKPDVVQA-TNLLYDLCKANKMKKAIKVMEMMV-SSGIIPDASSYTYLVNCLCKK---------GN- 148 (568)
Q Consensus 81 ~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~---------g~- 148 (568)
+.+...+.+.+....|+...- ..+-..|.-.|++++|++.--..- ...+.++...+..++.-|... +.
T Consensus 41 d~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~ 120 (929)
T KOG2062|consen 41 DSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNP 120 (929)
T ss_pred hhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCc
Confidence 455556666665545544433 334467788899998887654332 223455555566555443321 00
Q ss_pred ------hhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH-HHCCCCCCHhhHHHHHHHHHHcCC-HH
Q 041458 149 ------VGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRL-IQKGLVPNAFTYSFLLEAAYKERG-VH 220 (568)
Q Consensus 149 ------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~~~~~~~~~~~~li~~~~~~~~-~~ 220 (568)
-+.-..++++|.++.. +..-|..+|.......++ .++++. .+... +....+.++..+....+ .+
T Consensus 121 ~~~~~iD~rL~~iv~rmi~kcl--~d~e~~~aiGia~E~~rl----d~ie~Ail~~d~--~~~~~~yll~l~~s~v~~~e 192 (929)
T KOG2062|consen 121 EQKSPIDQRLRDIVERMIQKCL--DDNEYKQAIGIAFETRRL----DIIEEAILKSDS--VIGNLTYLLELLISLVNNRE 192 (929)
T ss_pred cccCCCCHHHHHHHHHHHHHhh--hhhHHHHHHhHHhhhhhH----HHHHHHhccccc--cchHHHHHHHHHHHHHhhHH
Confidence 1223344444444321 111222233322222222 223331 12211 22233334444433322 33
Q ss_pred HHHHHHHHHHH---cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 041458 221 AAMKLLDDIIA---KGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK 267 (568)
Q Consensus 221 ~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 267 (568)
--.++++.+.+ .+..|| |..+..+|.-..+.+.+.++++++.+.
T Consensus 193 fR~~vlr~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 193 FRNKVLRLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 33344444433 234444 445677888889999999999988874
No 309
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.70 E-value=6.3 Score=33.51 Aligned_cols=71 Identities=18% Similarity=0.049 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCCHHHH
Q 041458 395 EAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKY---GFTPDSYTYSSLIRGLCMEGLIEEA 466 (568)
Q Consensus 395 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a 466 (568)
+|...|-.+...+...++.....+...|. ..+.+++++++.+..+. +-.+|+..+.+|++.+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444433333333333333232 34555555555544432 1234445555555555555555544
No 310
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.46 E-value=22 Score=32.19 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 041458 311 YNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMF 370 (568)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 370 (568)
++.....|..+|.+.+|.++.+..+..+ +.+...+..++..+...|+--.+.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444556666666666666666665543 2355556666666666666555555555543
No 311
>PRK09687 putative lyase; Provisional
Probab=87.45 E-value=23 Score=32.52 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=28.9
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
|..+-...+.++++.|+ ..|...+-+..+.+ + .....+.++...|.. +|...++++.+...
T Consensus 205 ~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred ChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 44455555555555555 23444444444321 1 123445555555553 45555555555443
No 312
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.44 E-value=1 Score=25.65 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=16.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHH
Q 041458 95 KPDVVQATNLLYDLCKANKMKKAI 118 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~A~ 118 (568)
+-|...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 346667777777777777777664
No 313
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.31 E-value=4.9 Score=29.28 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=32.0
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041458 427 KTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME 474 (568)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 474 (568)
+.-++.+-++.+....+.|++....+-+.+|.+.+++.-|.++|+-.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344556666666666666777777777777777777777777776665
No 314
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.30 E-value=1.4 Score=24.67 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=15.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
.|..+...+...|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555566666666666666666655
No 315
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.26 E-value=32 Score=33.88 Aligned_cols=31 Identities=6% Similarity=0.116 Sum_probs=16.9
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 041458 342 SAASYNPIIARLCSEGKVDLVVKCLDQMFHR 372 (568)
Q Consensus 342 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 372 (568)
|....-+++..+..+-.+.-...+..+|+.-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~ 95 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY 95 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 4445555555665555555555555555543
No 316
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.20 E-value=9.7 Score=37.98 Aligned_cols=99 Identities=17% Similarity=0.165 Sum_probs=48.2
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 041458 144 CKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAM 223 (568)
Q Consensus 144 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 223 (568)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|.+... |..|+-.+...|+.+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34555555555544332 445566666666666666666666554432 333444455555544444
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 041458 224 KLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRD 263 (568)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 263 (568)
.+-....+.|.. |...-+|...|+++++.+++..
T Consensus 713 ~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 443333333221 2222244445666666555543
No 317
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.11 E-value=5.1 Score=36.33 Aligned_cols=55 Identities=15% Similarity=-0.028 Sum_probs=35.2
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 386 MLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTK 440 (568)
Q Consensus 386 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 440 (568)
.++-.-++++++.++..-.+-|+.||..+++.+++.+.+.+++.+|.++...|..
T Consensus 109 rlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 109 RLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3334445556666666666666667777777777777777777777666665554
No 318
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=86.80 E-value=3.4 Score=40.81 Aligned_cols=132 Identities=8% Similarity=-0.110 Sum_probs=93.8
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 431 AFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 431 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
|-.++..|. ..+.|-....|...--+...|+...|.+.+.......+.-..+....|...+.+.|...+|-.++.+...
T Consensus 592 ~~~~~~~~~-~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~ 670 (886)
T KOG4507|consen 592 GSFLFHAIN-KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALA 670 (886)
T ss_pred HHHHHHHhc-CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHh
Confidence 334444443 2233333333333333345789999999888776443333444556677777888888899999988887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhc
Q 041458 511 KGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFE 564 (568)
Q Consensus 511 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 564 (568)
.. ...+.++-.+.+++....+++.|.+.+++..++.+..+...+.|.+.-|..
T Consensus 671 ~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c~~ 723 (886)
T KOG4507|consen 671 IN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRCMQ 723 (886)
T ss_pred hc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhh
Confidence 54 456677888889999999999999999999999999999988888877754
No 319
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.65 E-value=24 Score=31.91 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhh
Q 041458 347 NPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGN 405 (568)
Q Consensus 347 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 405 (568)
......|...|.+.+|.++.++.+...+-........+..+...|+--.+..-++.+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34455677777777777777777665433333333336677777776666666665543
No 320
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.42 E-value=7.2 Score=28.82 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCChhhHHHHHH
Q 041458 430 QAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME-EYDYKPDVDNFNALLL 490 (568)
Q Consensus 430 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~li~ 490 (568)
+..+-++.+....+.|++.+..+.+.+|.+.+++.-|.++|+.++ +.|.. ...|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455666666666777888888888888888888888888887776 44322 225555543
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.36 E-value=12 Score=31.92 Aligned_cols=74 Identities=18% Similarity=0.039 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHHhcCChHHHH
Q 041458 184 LNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAK---GGKPNLVSYNVLLTGLCKEGRTEEAI 258 (568)
Q Consensus 184 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~A~ 258 (568)
-+.|.+.|-++...+..-++.....+.. |....+.+++..++...++. +..+|+..+.+|++.+.+.|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3667777777776665545444444444 44466778888888777664 23567788888888888888887764
No 322
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.48 E-value=1.8 Score=23.98 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=14.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 523 LVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
+..++.+.|++++|.+.++++++..|
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34455555666666666666655544
No 323
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.90 E-value=26 Score=30.64 Aligned_cols=19 Identities=0% Similarity=0.267 Sum_probs=11.9
Q ss_pred HccCChHHHHHHHHHHHHC
Q 041458 493 CKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~ 511 (568)
...+++.+|+++|++....
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666777777766654
No 324
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.59 E-value=51 Score=35.44 Aligned_cols=116 Identities=14% Similarity=0.103 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHhhHHHHHHHHHhcCCh--HHHHHHHHHhhhCCCCCChhHH---
Q 041458 205 TYSFLLEAAYKERGVHAAMKLLDDIIAKG---GKPNLVSYNVLLTGLCKEGRT--EEAIRFFRDLPSKGFEPNVVSY--- 276 (568)
Q Consensus 205 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~--~~A~~~~~~~~~~~~~p~~~~~--- 276 (568)
-|..|+..|...|+.++|+++|.+..... ..--...+...+..+.+.+.. +-.+++-+...+....-....+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 46667777777777777777777776532 000111222244444444433 4444444443332111000011
Q ss_pred ---------HHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHh
Q 041458 277 ---------NILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY 320 (568)
Q Consensus 277 ---------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (568)
..-+-.|......+-+...++.+....-.++....+.++..|.+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 01223466777788888888888766545566777777777764
No 325
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.02 E-value=22 Score=29.10 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=7.0
Q ss_pred cCCHHHHHHHHHHHhh
Q 041458 356 EGKVDLVVKCLDQMFH 371 (568)
Q Consensus 356 ~~~~~~a~~~~~~~~~ 371 (568)
.++.+++..++.-+.-
T Consensus 23 ~~~~~D~e~lL~ALrv 38 (160)
T PF09613_consen 23 LGDPDDAEALLDALRV 38 (160)
T ss_pred cCChHHHHHHHHHHHH
Confidence 3444444444444433
No 326
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.64 E-value=11 Score=31.97 Aligned_cols=89 Identities=13% Similarity=0.040 Sum_probs=41.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCH
Q 041458 318 LAYHGKTDHALKVLDEMVKGRFRPSA----ASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKV 393 (568)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (568)
+.+.|++++|..-|...+..-..... ..|..-..++.+.+.++.|+.-..+.++.++.-......-...|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 44555555555555555543211111 11222223455556666666555555555433333333334445555555
Q ss_pred HHHHHHHHHHhhC
Q 041458 394 QEAFAIIQSLGNK 406 (568)
Q Consensus 394 ~~a~~~~~~~~~~ 406 (568)
++|+.-|+.+.+.
T Consensus 185 eealeDyKki~E~ 197 (271)
T KOG4234|consen 185 EEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555554
No 327
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.49 E-value=20 Score=28.24 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=43.9
Q ss_pred CCChhhHHHHHHHHHccCC---hHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHH
Q 041458 479 KPDVDNFNALLLGLCKSRR---TDLSLEVFQMMIEKGQMP--NETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESA 553 (568)
Q Consensus 479 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 553 (568)
.++..+--.+..++.+..+ ..+.+.++++..+. -.| .....-.|.-++.+.++++++.++++.+++..+.+..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3445555555666665543 45566677777652 233 22333344556777777888888887777777775543
No 328
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.42 E-value=19 Score=27.87 Aligned_cols=60 Identities=5% Similarity=0.113 Sum_probs=39.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHh
Q 041458 501 SLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQ 560 (568)
Q Consensus 501 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 560 (568)
..+-++.+...++.|++.....-+++|.+.+++..|.++++-+..+-+.....+..+++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYVKE 127 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 444555666667777888878888888888888888887777765555544444444443
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.35 E-value=2.8 Score=23.50 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 520 YTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 520 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
|..+...+...|++++|.+.+++.++.
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444445555555555555555555443
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.18 E-value=3.3 Score=24.45 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 518 TTYTILVEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (568)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666666666666666543
No 331
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.15 E-value=3.3 Score=24.45 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041458 169 VTYNSLVRGLCMLGNLNQSLQFLDRLI 195 (568)
Q Consensus 169 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 195 (568)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345556666666666666666665554
No 332
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.15 E-value=36 Score=30.95 Aligned_cols=63 Identities=8% Similarity=0.071 Sum_probs=30.7
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCChhHHHHHHHHHHcCCCHHHHHHHHH
Q 041458 235 KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK-GFEPNVVSYNILLRSLCMEGRWEEANELLA 297 (568)
Q Consensus 235 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 297 (568)
.++..+...++..+++.+++.+-.+++...... +..-|...|..+|......|+..-..++.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 334444445555555555555555555444333 333445555555555555555444444443
No 333
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.32 E-value=24 Score=35.37 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=80.4
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041458 344 ASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLC 423 (568)
Q Consensus 344 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 423 (568)
...+.++.-+.++|-.++|+++ ...|+.. .....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~-------s~D~d~r----Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALEL-------STDPDQR----FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhc-------CCChhhh----hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 3445566666666666665543 2222221 233456677777777766543 3455888888888
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHH
Q 041458 424 RKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLE 503 (568)
Q Consensus 424 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 503 (568)
..+++..|.+.|.+... |..|+-.+...|+-+.-..+-....+.|.. |....+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHH
Confidence 88888888888776543 446666666677766555555555544432 223345667788888877
Q ss_pred HHHHH
Q 041458 504 VFQMM 508 (568)
Q Consensus 504 ~~~~m 508 (568)
++.+-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 76554
No 334
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.83 E-value=77 Score=33.78 Aligned_cols=225 Identities=13% Similarity=0.045 Sum_probs=119.3
Q ss_pred HHcCCCHHHHHHHHHHhccCCCCcCH-------hhHHHHHH-HHHhcCChHHHHHHHHHHHHC----CCCCCcccHHHHH
Q 041458 283 LCMEGRWEEANELLAEMDGGDRSPTI-------VTYNILIG-SLAYHGKTDHALKVLDEMVKG----RFRPSAASYNPII 350 (568)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li 350 (568)
.....++++|..++.++...-..|+. ..++.+-. .....|+++.|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 45578899999888876543212221 23333322 334568889998888776653 2233445556666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH------HHHHHhCCC--HHHHHHHHHHHhhCCC---C---CChhhHH
Q 041458 351 ARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG------LAMLCGVGK--VQEAFAIIQSLGNKQN---S---SPQEFYK 416 (568)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~a~~~~~~~~~~~~---~---~~~~~~~ 416 (568)
.+..-.|++++|..+..+..+..-.-+...+.. ...+...|. ..+....|........ . +-.-...
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777778999999988887766543444444433 223344563 3333344443332211 1 1112334
Q ss_pred HHHHHHHhc-CChhHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCChhhHHHHH
Q 041458 417 YVITSLCRK-GKTYQAFQLLYEMTKYGFTPDSYT--YSSLIRGLCMEGLIEEALEIFVVMEEYDY----KPDVDNFNALL 489 (568)
Q Consensus 417 ~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~li 489 (568)
.+..++.+. +...++..-+.-.......|-..- +..|+......|++++|...++++..... .++...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 444444441 122222222222222222222222 23567777889999999999988875322 22333222333
Q ss_pred HH--HHccCChHHHHHHHHH
Q 041458 490 LG--LCKSRRTDLSLEVFQM 507 (568)
Q Consensus 490 ~~--~~~~g~~~~a~~~~~~ 507 (568)
.. ....|+..++.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 32 2356777777766655
No 335
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.74 E-value=12 Score=36.32 Aligned_cols=38 Identities=21% Similarity=0.132 Sum_probs=27.1
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH 529 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 529 (568)
.|...|++..|.+.|.+.+.. +.-++..|-.|..+|..
T Consensus 344 ~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 466777777777777777764 55677777777777764
No 336
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.31 E-value=40 Score=30.14 Aligned_cols=166 Identities=11% Similarity=0.029 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh-HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041458 393 VQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTY-QAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFV 471 (568)
Q Consensus 393 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 471 (568)
..+-++.+.++.+.+++ +-..|..--......|++. .-+++.+.|.... .-+-..|..--.++..-++++.-+.+-.
T Consensus 94 L~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~rELef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccchHHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 44444555555544333 4444443333333444554 5555666666532 2245556655566666666777677766
Q ss_pred HHHhCCCCCChhhHHHHHHHHHc-cC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cC--ChhHHHHHHHH
Q 041458 472 VMEEYDYKPDVDNFNALLLGLCK-SR-----RTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH-QD--ELELSAEVLKE 542 (568)
Q Consensus 472 ~m~~~~~~p~~~~~~~li~~~~~-~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g--~~~~a~~~~~~ 542 (568)
++.+.++. |-..||.-.-.... .| ..+.-..+..+++.. ++.+...|+.|-..+.. .| .......+...
T Consensus 172 ~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~-vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~ 249 (318)
T KOG0530|consen 172 ELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELNYTKDKILL-VPNNESAWNYLKGLLELDSGLSSDSKVVSFVEN 249 (318)
T ss_pred HHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh-CCCCccHHHHHHHHHHhccCCcCCchHHHHHHH
Confidence 66665554 33444432111111 11 112222333334432 34456666666555553 33 12223333333
Q ss_pred HH-HcCCCCHHHHHHHHHhhh
Q 041458 543 LQ-LRQVVSESAVERLVMQYD 562 (568)
Q Consensus 543 ~~-~~~~~~~~~~~~l~~~~~ 562 (568)
+. ..+...+..+..++..|.
T Consensus 250 l~~~~~~~sP~lla~l~d~~~ 270 (318)
T KOG0530|consen 250 LYLQLPKRSPFLLAFLLDLYA 270 (318)
T ss_pred HhhccCCCChhHHHHHHHHHH
Confidence 33 333335555555555553
No 337
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.10 E-value=0.41 Score=38.83 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=58.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 041458 417 YVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSR 496 (568)
Q Consensus 417 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 496 (568)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.+..++..++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 356777778888888888888887665556777888888888887777777776621 1122345667777778
Q ss_pred ChHHHHHHHHHHH
Q 041458 497 RTDLSLEVFQMMI 509 (568)
Q Consensus 497 ~~~~a~~~~~~m~ 509 (568)
.++++.-++.++-
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 8888877776654
No 338
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.05 E-value=33 Score=29.09 Aligned_cols=55 Identities=5% Similarity=0.055 Sum_probs=24.4
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
.....|.+|+|..+++...+.+. .......-.+.+...|+.++|+.-|++.++.+
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34445555555555544433211 11112222344555555555555555555554
No 339
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.46 E-value=11 Score=34.81 Aligned_cols=90 Identities=12% Similarity=-0.097 Sum_probs=54.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 463 (568)
...|.+.|.+++|+..|.......+. +.+++..-..+|.+...+..|..-....+..+ +.-...|..-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 45788899999999998877665443 56677777788888888877776555554321 00112233333333334555
Q ss_pred HHHHHHHHHHHh
Q 041458 464 EEALEIFVVMEE 475 (568)
Q Consensus 464 ~~a~~~~~~m~~ 475 (568)
.+|.+-++...+
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 555555555554
No 340
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.79 E-value=17 Score=31.34 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKG--QMPNETTYTILVE 525 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~ 525 (568)
|.+.-++.+.+.+.+++++...+.-.+..+. |...-..++..||-.|++++|..-++-.-... ..+...+|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4455667777888888888888777766444 66666778888888898888887777666531 2233455555554
No 341
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.04 E-value=71 Score=31.66 Aligned_cols=177 Identities=14% Similarity=0.156 Sum_probs=91.7
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041458 132 DASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLE 211 (568)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 211 (568)
|.....+++..+.......-...+..+|...| -+-..|..++.+|... ..++-..+++++.+..+ |.....--+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 44455566666666666666666666666654 3556666677777666 44556666666665432 2333333333
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-----CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCChhHHHHHHHHHHc
Q 041458 212 AAYKERGVHAAMKLLDDIIAKGGK-----PNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK-GFEPNVVSYNILLRSLCM 285 (568)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~ 285 (568)
.+...++.+.+...|.++..+-++ .-...|.-+... -..+.+....+..++... |...-...+.-+-.-|..
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 333346666666666666544211 011234433321 123455555555544332 222233444555556666
Q ss_pred CCCHHHHHHHHHHhccCCCCcCHhhHHHHHH
Q 041458 286 EGRWEEANELLAEMDGGDRSPTIVTYNILIG 316 (568)
Q Consensus 286 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (568)
..++++|++++..+.+.+ ..|..+-..++.
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 677777777777665554 234444434443
No 342
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.02 E-value=16 Score=30.42 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041458 500 LSLEVFQMMIEKGQMPNETTYTILVEGI 527 (568)
Q Consensus 500 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 527 (568)
+|.+.|++..+ ..|+..+|+.-+..+
T Consensus 98 kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 98 KATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 34444444443 245555555544444
No 343
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.49 E-value=4.2 Score=24.78 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=21.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 522 ILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
-|..+|...|+.+.|++++++++..+.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 366788888888889888888886543
No 344
>PRK09687 putative lyase; Provisional
Probab=78.26 E-value=56 Score=30.06 Aligned_cols=87 Identities=10% Similarity=0.104 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 041458 430 QAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMI 509 (568)
Q Consensus 430 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 509 (568)
.+...+..+.. .+|..+-...+.++.+.|+ ..|...+-...+.+ + .....+.+++..|.. +|...+.++.
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 44444444442 3455555566666666666 34555554444432 2 233566667777764 5777777776
Q ss_pred HCCCCCCHHHHHHHHHHHH
Q 041458 510 EKGQMPNETTYTILVEGIA 528 (568)
Q Consensus 510 ~~g~~p~~~~~~~ll~~~~ 528 (568)
+. .||..+-...+.+|.
T Consensus 262 ~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 262 YK--FDDNEIITKAIDKLK 278 (280)
T ss_pred hh--CCChhHHHHHHHHHh
Confidence 53 346665555555553
No 345
>PHA02875 ankyrin repeat protein; Provisional
Probab=77.57 E-value=62 Score=31.81 Aligned_cols=206 Identities=15% Similarity=0.078 Sum_probs=98.4
Q ss_pred HHcCCCHHHHHHHHHHhccCCCCcCHhh--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc--cHHHHHHHHHhcCC
Q 041458 283 LCMEGRWEEANELLAEMDGGDRSPTIVT--YNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAA--SYNPIIARLCSEGK 358 (568)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~ 358 (568)
.+..|+.+-+..++ +.|..++... ..+.+...+..|+.+-+ +.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34567766555554 4455554432 23445555667776543 4444555544432 12234555667788
Q ss_pred HHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCChhHH
Q 041458 359 VDLVVKCLDQMFHRRCKPN----EGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQ---EFYKYVITSLCRKGKTYQA 431 (568)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A 431 (568)
.+.+..+++ .+...+ ..-...+...+..|+.+-...++ +.|..++. .-.+. +...+..|+.+-+
T Consensus 81 ~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll----~~gad~~~~~~~g~tp-Lh~A~~~~~~~~v 151 (413)
T PHA02875 81 VKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLLI----ARGADPDIPNTDKFSP-LHLAVMMGDIKGI 151 (413)
T ss_pred HHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHHH----hCCCCCCCCCCCCCCH-HHHHHHcCCHHHH
Confidence 776555543 332221 11122355556667665444443 33433322 11222 3334456665544
Q ss_pred HHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHccCChHHHHHHH
Q 041458 432 FQLLYEMTKYGFTPDS---YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNF---NALLLGLCKSRRTDLSLEVF 505 (568)
Q Consensus 432 ~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~~ 505 (568)
.. +.+.|..++. .-.+.|. ..+..|+.+ +.+.+.+.|..++...- .+.+...+..|+.+ +.
T Consensus 152 ~~----Ll~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv 218 (413)
T PHA02875 152 EL----LIDHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IV 218 (413)
T ss_pred HH----HHhcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HH
Confidence 33 3444544332 2233333 334456654 34445566666554321 23444344556543 45
Q ss_pred HHHHHCCCCCCHH
Q 041458 506 QMMIEKGQMPNET 518 (568)
Q Consensus 506 ~~m~~~g~~p~~~ 518 (568)
+.+.+.|..++..
T Consensus 219 ~~Ll~~gad~n~~ 231 (413)
T PHA02875 219 RLFIKRGADCNIM 231 (413)
T ss_pred HHHHHCCcCcchH
Confidence 5556677666643
No 346
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.92 E-value=45 Score=28.32 Aligned_cols=129 Identities=9% Similarity=-0.005 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH-----
Q 041458 378 EGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYK--YVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTY----- 450 (568)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~----- 450 (568)
...|..+......+.. +.....+.+...+....-..+. .+...+...|++++|+.-++..... |....+
T Consensus 54 S~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~ 129 (207)
T COG2976 54 SAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH
Confidence 3344444444444444 4555555555553332222222 2345678899999999999987753 222333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 041458 451 SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKG 512 (568)
Q Consensus 451 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 512 (568)
..|.......|.+++|+..++...+.+.. ......-.+.+...|+.++|..-|++..+.+
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34556778899999999999887765332 3334456788999999999999999999874
No 347
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.69 E-value=7.2 Score=21.70 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 483 DNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 483 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566677778888888888888887776
No 348
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.44 E-value=4 Score=22.48 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=15.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHC
Q 041458 487 ALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 487 ~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
.+..++.+.|+.++|.+.|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445555666666666666666653
No 349
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=76.33 E-value=53 Score=28.82 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=44.7
Q ss_pred HHhcCCHHHHHHHHHHHHh-CC-----------CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041458 457 LCMEGLIEEALEIFVVMEE-YD-----------YKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILV 524 (568)
Q Consensus 457 ~~~~g~~~~a~~~~~~m~~-~~-----------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 524 (568)
+-..|+..+|+.-++.-.. .| -.|.+.....++..| ..+++++|.+++.++.+.|+.|.. ..+.+.
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D-ii~~~F 279 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED-IITTLF 279 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH-HHHHHH
Confidence 3456777777776665431 11 145666666666654 446889999999999988887744 334455
Q ss_pred HHHHh
Q 041458 525 EGIAH 529 (568)
Q Consensus 525 ~~~~~ 529 (568)
+++-.
T Consensus 280 Rv~K~ 284 (333)
T KOG0991|consen 280 RVVKN 284 (333)
T ss_pred HHHHh
Confidence 55543
No 350
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.33 E-value=1.9e+02 Score=35.05 Aligned_cols=319 Identities=12% Similarity=0.042 Sum_probs=158.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHH----HHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 041458 173 SLVRGLCMLGNLNQSLQFLDRL----IQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGL 248 (568)
Q Consensus 173 ~li~~~~~~g~~~~a~~~~~~m----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 248 (568)
.+..+-.+++.+..|...++.- .+. ......|-.+...|...+++|....+...-.. +...+. -|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHH
Confidence 4555667788889999888873 221 11223344455589999999888777664111 222233 34455
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHH-HHHHHhcCChHHH
Q 041458 249 CKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNIL-IGSLAYHGKTDHA 327 (568)
Q Consensus 249 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a 327 (568)
...|++..|...|+.+.+.+.. ...+++-++..-...|.++......+-..... .+....++.+ +.+--+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhh
Confidence 6789999999999999887322 36678878877777888888777666554432 3333334333 2333556666666
Q ss_pred HHHHHHHHHCCCCCCcccHHHH--HHHHHhcCCHH--HHHHHHHHHhhCCCCC------C---hhhHHHHHHHHhCCCHH
Q 041458 328 LKVLDEMVKGRFRPSAASYNPI--IARLCSEGKVD--LVVKCLDQMFHRRCKP------N---EGTYNGLAMLCGVGKVQ 394 (568)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~--~a~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~ 394 (568)
..... . .+..+|... .....+...-| .-.+.++.+.+.-+.| . ...|..+.-+...-+.+
T Consensus 1538 e~~l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1538 ESYLS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred hhhhh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 55544 1 133344333 22222211111 1112222222211111 0 01111111110000111
Q ss_pred HHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHH-HHHCCCCC-----ChhhHHHHHHHHHhcCCHHHHH
Q 041458 395 EAFAIIQSLGNK-QNSSPQEFYKYVITSLCRKGKTYQAFQLLYE-MTKYGFTP-----DSYTYSSLIRGLCMEGLIEEAL 467 (568)
Q Consensus 395 ~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~a~ 467 (568)
.-.+........ ....+...|..-+..-....+..+-+--+++ +......| -..+|....+....+|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111111111000 0001111222222111111111111111111 11111111 2456777888888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 468 EIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 468 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
..+-...+.+ -...+.-.+.-+...|+...|+.++++.++.
T Consensus 1691 nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1691 NALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 8877766654 2345556666778888888888888887754
No 351
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.93 E-value=15 Score=23.55 Aligned_cols=30 Identities=17% Similarity=0.010 Sum_probs=16.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCHHH
Q 041458 524 VEGIAHQDELELSAEVLKELQLRQVVSESA 553 (568)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 553 (568)
.-++.+.|++++|.++.+.+++..|.+..+
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 345566666666666666666666664443
No 352
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.60 E-value=44 Score=26.99 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=8.7
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 041458 354 CSEGKVDLVVKCLDQMFH 371 (568)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~ 371 (568)
...|++++|..+|+.+.+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 344555555555544443
No 353
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.82 E-value=46 Score=26.88 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=32.8
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 423 CRKGKTYQAFQLLYEMTKYGFTPDSYTY-SSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 423 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
...++++++..++..|.-. .|+..-. ..-...+...|++++|..+|+...+.
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3477788888888777653 4443211 12233456778888888888877754
No 354
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.51 E-value=24 Score=35.28 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=36.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 041458 111 ANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQF 190 (568)
Q Consensus 111 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 190 (568)
.|+...|...+..+......-.....-.|.+...+.|...+|-.++.+..... ...+-++..+.++|....+.++|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 34455554444443322111111222333334444444444544444443332 12333444455555555555555555
Q ss_pred HHHHHHC
Q 041458 191 LDRLIQK 197 (568)
Q Consensus 191 ~~~m~~~ 197 (568)
|++..+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 5554443
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.34 E-value=35 Score=29.52 Aligned_cols=77 Identities=18% Similarity=0.160 Sum_probs=57.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHH
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYD--YKPDVDNFNALLLG 491 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~ 491 (568)
+.+..++.+.+.+...+|+...++-.+.. +.|..+-..++..+|-.|++++|..-++...+.. ..+....|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45566788899999999999998877763 2355666788999999999999998888776542 23345566666654
No 356
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=73.25 E-value=84 Score=29.65 Aligned_cols=119 Identities=10% Similarity=-0.019 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc---cCChHHHHHHH
Q 041458 429 YQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK---SRRTDLSLEVF 505 (568)
Q Consensus 429 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~ 505 (568)
+.-+.++++.++.+. -+...+..++..+.+..+.++..+-|+.+...... +...|...++.... .-.++....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 445667777666632 34556667777777777788888888888765333 66677777765443 22455666666
Q ss_pred HHHHHC------CC------CC--CHH---HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 506 QMMIEK------GQ------MP--NET---TYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 506 ~~m~~~------g~------~p--~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
.+.++. +. .+ +.. ++..+...+..+|..+.|..+++-+++.+..
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 555431 11 00 111 2223333455689999999999999988875
No 357
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.22 E-value=8.6 Score=23.45 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=11.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHH
Q 041458 488 LLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 488 li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555553
No 358
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.12 E-value=41 Score=30.37 Aligned_cols=18 Identities=6% Similarity=0.005 Sum_probs=8.3
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 041458 210 LEAAYKERGVHAAMKLLD 227 (568)
Q Consensus 210 i~~~~~~~~~~~a~~~~~ 227 (568)
|.+++..+++.++....-
T Consensus 90 IQALAEmnrWreVLsWvl 107 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVL 107 (309)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 444444555544444433
No 359
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=71.75 E-value=25 Score=28.43 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=40.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CHHHHHHHHHhhhhcCC
Q 041458 504 VFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV-SESAVERLVMQYDFEGI 566 (568)
Q Consensus 504 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 566 (568)
+.+.+.+.|++++..= ..+++.+..+++.-.|.++++++.+.++. +..++.+-++.+...|+
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3445555666554432 23455666666667778888888877777 77777777777777765
No 360
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.42 E-value=60 Score=29.37 Aligned_cols=89 Identities=11% Similarity=0.057 Sum_probs=50.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh--
Q 041458 173 SLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCK-- 250 (568)
Q Consensus 173 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-- 250 (568)
.=|.+++..++|.+++...-+--+.--+.-......-|-.|.+.+++..+.++-...+.....-+...|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 347888888998888776555433211222333344444567777777776666666554332233345555554433
Q ss_pred ---cCChHHHHHHH
Q 041458 251 ---EGRTEEAIRFF 261 (568)
Q Consensus 251 ---~g~~~~A~~~~ 261 (568)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 46666666555
No 361
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.80 E-value=1.6e+02 Score=31.92 Aligned_cols=41 Identities=2% Similarity=-0.040 Sum_probs=26.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCR 424 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 424 (568)
+..++.....+-+...++.+......++....+.++.-|+.
T Consensus 598 Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 598 VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 45556666666677777777666555566666666666653
No 362
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.69 E-value=1.1e+02 Score=30.11 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=32.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 109 CKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
...+.++...+++..+...|.......++.-+..|.+.|...
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 456788888888888888887666667787777777777543
No 363
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.65 E-value=79 Score=27.84 Aligned_cols=24 Identities=8% Similarity=0.030 Sum_probs=12.4
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCh
Q 041458 355 SEGKVDLVVKCLDQMFHRRCKPNE 378 (568)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~~ 378 (568)
..+++.+|+++|+++.......+.
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccchH
Confidence 445555566666555554443333
No 364
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.56 E-value=1.6e+02 Score=31.49 Aligned_cols=224 Identities=13% Similarity=0.023 Sum_probs=118.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCcc-------cHHHHHH-HHHhcCCHHHHHHHHHHHhhCCCC----CChhhHHH-HH
Q 041458 319 AYHGKTDHALKVLDEMVKGRFRPSAA-------SYNPIIA-RLCSEGKVDLVVKCLDQMFHRRCK----PNEGTYNG-LA 385 (568)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~-~~ 385 (568)
....++++|..+..++...-..|+.. .|+.+-. .....|+++.+.++.+.....-+. +....+.. ..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678899998888876543233222 2333322 234578889999888887764222 12222222 34
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCCh---hhHHHHHH--HHHhcCChh--HHHHHHHHHHHC--CCCC----ChhhHHH
Q 041458 386 MLCGVGKVQEAFAIIQSLGNKQNSSPQ---EFYKYVIT--SLCRKGKTY--QAFQLLYEMTKY--GFTP----DSYTYSS 452 (568)
Q Consensus 386 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~--~~~~~g~~~--~A~~~~~~~~~~--~~~p----~~~~~~~ 452 (568)
...-.|++++|..+.....+....-+. ..|..+.. .+...|+.. +....|...... +-+| -..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 455579999999888766553222232 23433332 244556332 223333322211 1111 2234455
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHccCChHHHHHHHHHHHHCCC----CCCHHHHHHHHH
Q 041458 453 LIRGLCM-EGLIEEALEIFVVMEEYDYKPDVDNFN--ALLLGLCKSRRTDLSLEVFQMMIEKGQ----MPNETTYTILVE 525 (568)
Q Consensus 453 l~~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~~~~~ll~ 525 (568)
+..++.+ .+...++..-+..-......|-...+. .|+......|+.++|...+.++..... .++..+-...++
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 5565554 223333333333333333333333233 677888899999999999998876422 223333333333
Q ss_pred H--HHhcCChhHHHHHHHH
Q 041458 526 G--IAHQDELELSAEVLKE 542 (568)
Q Consensus 526 ~--~~~~g~~~~a~~~~~~ 542 (568)
. ....|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 3 2346888887776665
No 365
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.23 E-value=1.5e+02 Score=30.80 Aligned_cols=30 Identities=7% Similarity=0.037 Sum_probs=0.0
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041458 494 KSRRTDLSLEVFQMMIEKGQMPNETTYTIL 523 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 523 (568)
+.|+..+|.+.+-.+.+.+..|...-...|
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL 536 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLL 536 (566)
T ss_dssp ------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHH
Confidence 346677777766666665555554443333
No 366
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.20 E-value=35 Score=26.47 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041458 430 QAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME 474 (568)
Q Consensus 430 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 474 (568)
+..+-++.+....+.|++.....-+.+|.+.+|+..|.++|+-++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333444444444455555555555555555555555555555544
No 367
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=68.59 E-value=95 Score=28.38 Aligned_cols=199 Identities=12% Similarity=0.135 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc----CC---hhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCChh
Q 041458 79 LNDAFLQLERMVSKGHKPDVVQATNLLYDLCKA----NK---MKKAIKVMEMMVSSGIIPDA-SSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 79 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~---~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~ 150 (568)
+-.++--|-.|+-. ..|........+.-|... |. -++-...++-...+ +.++. .-|..|+. +...+.
T Consensus 71 yW~~R~~Fl~lLn~-~~p~~y~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~-~~~~k~~~Y~~LVk---~N~~Vv 145 (292)
T PF13929_consen 71 YWSLRLKFLKLLNI-ADPQNYSVRRFINDYFLLKKSMGCELTKEDLISFLKLVIIN-LSSNKSFNYWDLVK---RNKIVV 145 (292)
T ss_pred hHHHHHHHHHHHhh-cCcccCCHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc-cccccchHHHHHHH---hhHHHH
Confidence 44566556566544 355666666666655432 21 12233444443332 11111 12444442 233456
Q ss_pred hHHHHHHHHHh-CCCCCcHHHHHHHHHHHHh-cC-ChHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 041458 151 YAMQLVEKMED-YGYPTNTVTYNSLVRGLCM-LG-NLNQSLQFLDRLIQ-KGLVPNAFTYSFLLEAAYKERGVHAAMKLL 226 (568)
Q Consensus 151 ~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 226 (568)
+|+++|+.... ..+-.|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...++..+++.+++..-.+++
T Consensus 146 ~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW 225 (292)
T PF13929_consen 146 EALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFW 225 (292)
T ss_pred HHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHH
Confidence 77777774322 1233466777777777665 22 22222333333332 345778888999999999999999999999
Q ss_pred HHHHHc-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHH-----hhhCCCCCChhHHHHHHHH
Q 041458 227 DDIIAK-GGKPNLVSYNVLLTGLCKEGRTEEAIRFFRD-----LPSKGFEPNVVSYNILLRS 282 (568)
Q Consensus 227 ~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-----~~~~~~~p~~~~~~~l~~~ 282 (568)
+..... +...|...|..+|....+.|+..-..++.++ +++.++..+...-..+-..
T Consensus 226 ~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 226 EQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 988766 5667889999999999999999888877765 2344555555444444433
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.21 E-value=19 Score=25.30 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=30.3
Q ss_pred ccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHH
Q 041458 494 KSRRTDLSLEVFQMMIEKGQMPN--ETTYTILVEGIAHQDELELSAEVL 540 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~ 540 (568)
...+.++|+..|+..++.-..|. ..++..++.++...|+++++.++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777776522221 256666777777777777766554
No 369
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=67.75 E-value=44 Score=28.00 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHcCCCCHHH
Q 041458 533 LELSAEVLKELQLRQVVSESA 553 (568)
Q Consensus 533 ~~~a~~~~~~~~~~~~~~~~~ 553 (568)
+++|...|++....+|.+.-.
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHHhcCCCcHHH
Confidence 455555566666666554433
No 370
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=67.33 E-value=13 Score=19.44 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=13.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 485 FNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 485 ~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
|..+...+...|++++|...+++.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44444555555555555555555443
No 371
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=67.25 E-value=1e+02 Score=28.28 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=10.5
Q ss_pred HHHHHHHHHHcCCCHHH
Q 041458 275 SYNILLRSLCMEGRWEE 291 (568)
Q Consensus 275 ~~~~l~~~~~~~g~~~~ 291 (568)
+|..|+.+++..|+.+-
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 45666666666666543
No 372
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.04 E-value=96 Score=27.85 Aligned_cols=174 Identities=12% Similarity=0.096 Sum_probs=92.3
Q ss_pred CCCCCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCH---hhHHHHHHHHHhcCChHHHHHHHHHhhhC---CC-
Q 041458 198 GLVPNAFTYSFLLEA-AYKERGVHAAMKLLDDIIAKGGKPNL---VSYNVLLTGLCKEGRTEEAIRFFRDLPSK---GF- 269 (568)
Q Consensus 198 ~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~- 269 (568)
+-.||+..-|-.-.. -.+..++++|+.-|++.++....... .....++..+.+.|++++....|.++..- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345665543322211 12345778888888887765322222 33445677778888888888877776431 11
Q ss_pred -CCChhHHHHHHHHHHcCCCHHHHHHHHHHhccC-CCCcCH----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---
Q 041458 270 -EPNVVSYNILLRSLCMEGRWEEANELLAEMDGG-DRSPTI----VTYNILIGSLAYHGKTDHALKVLDEMVKGRFR--- 340 (568)
Q Consensus 270 -~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--- 340 (568)
.-+..+.|.++.......+.+-..++++.-... .-..+. .|-..|...|...|.+.+..++++++...--.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 123455666666666666665555555443211 000111 22345666666777777777776666543111
Q ss_pred -CC-------cccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 041458 341 -PS-------AASYNPIIARLCSEGKVDLVVKCLDQMFH 371 (568)
Q Consensus 341 -~~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 371 (568)
-| ...|..-|..|....+-.....++++.+.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 11 12344445556555555555556665543
No 373
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=66.72 E-value=6.7 Score=30.64 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=25.2
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYD 107 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (568)
.....|.-.+|..+|+.|+..|.+||. |+.|+..
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 334567777888999999999888874 6777654
No 374
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.57 E-value=51 Score=24.47 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=30.3
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCC
Q 041458 246 TGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGD 303 (568)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 303 (568)
..+.+.|++++|..+.+.+ ..||...|-+|.. .+.|..+++...+.++..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3455667777776666554 2566666655433 34555566666666665555
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.11 E-value=39 Score=28.93 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 514 MPNETTYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 514 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
.|+..++..++.++...|+.++|.++.+++....+
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 56666666666666666666666666666666655
No 376
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=64.83 E-value=1.9e+02 Score=30.39 Aligned_cols=17 Identities=12% Similarity=0.391 Sum_probs=9.1
Q ss_pred HHccCChHHHHHHHHHH
Q 041458 492 LCKSRRTDLSLEVFQMM 508 (568)
Q Consensus 492 ~~~~g~~~~a~~~~~~m 508 (568)
+...|++++|++.++++
T Consensus 515 ~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHTT-HHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhC
Confidence 34566666666555554
No 377
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.56 E-value=1.1e+02 Score=27.75 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=31.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhh-------HHHHHHHHHhcCChhhHHHHH
Q 041458 105 LYDLCKANKMKKAIKVMEMMVSSGIIPDASS-------YTYLVNCLCKKGNVGYAMQLV 156 (568)
Q Consensus 105 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~li~~~~~~g~~~~a~~~~ 156 (568)
.+...+.+++++|+..+.++...|+..|..+ ..-+...|...|+...-.+..
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 3444566777777777777777776555443 334555666666655544433
No 378
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.20 E-value=63 Score=24.02 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=23.0
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 041458 107 DLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYG 163 (568)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 163 (568)
.+...|++++|..+.+.. ..||...|.+|. -.+.|..+.+..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 344555555555554443 134555554442 224444444444444444443
No 379
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=61.72 E-value=2.1e+02 Score=30.27 Aligned_cols=85 Identities=16% Similarity=0.065 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---C----------CChhhHHHHHHHHH
Q 041458 428 TYQAFQLLYEMT-KYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDY---K----------PDVDNFNALLLGLC 493 (568)
Q Consensus 428 ~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---~----------p~~~~~~~li~~~~ 493 (568)
.++....+.... +.|+..+......++... .|++..+..+++++...|- . .+......+++++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 344555555443 457776776666666544 5899999999988765331 1 01112233333333
Q ss_pred ccCChHHHHHHHHHHHHCCCCC
Q 041458 494 KSRRTDLSLEVFQMMIEKGQMP 515 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~g~~p 515 (568)
. ++...++++++++...|..+
T Consensus 258 ~-~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 258 N-QDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred c-CCHHHHHHHHHHHHHhCCCH
Confidence 3 56666666666666655443
No 380
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.70 E-value=2.3e+02 Score=30.45 Aligned_cols=105 Identities=19% Similarity=0.110 Sum_probs=64.7
Q ss_pred hcCCHHHHHHHHHHHHhC------CCCCChhhHHHHHHHHH---------------ccCChHHHHHHHHHHHHCCCCCCH
Q 041458 459 MEGLIEEALEIFVVMEEY------DYKPDVDNFNALLLGLC---------------KSRRTDLSLEVFQMMIEKGQMPNE 517 (568)
Q Consensus 459 ~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~li~~~~---------------~~g~~~~a~~~~~~m~~~g~~p~~ 517 (568)
..|.+.+|.+.|+.+.-. .-.-+..-...++..++ ..+..+.+.++-.-.....++|-.
T Consensus 1003 t~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~H 1082 (1202)
T KOG0292|consen 1003 TEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPMH 1082 (1202)
T ss_pred ccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcHH
Confidence 578899999999877521 00112222233333331 123444554454445555677754
Q ss_pred --HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHH-HHHHHHhhhh
Q 041458 518 --TTYTILVEGIAHQDELELSAEVLKELQLRQVVSESA-VERLVMQYDF 563 (568)
Q Consensus 518 --~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 563 (568)
.+....+..+.+.+++..|..+..++++.++.++.+ ..+.+...+.
T Consensus 1083 ~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~e 1131 (1202)
T KOG0292|consen 1083 RILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAE 1131 (1202)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh
Confidence 455677889999999999999999999999985543 3444444333
No 381
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=61.67 E-value=12 Score=29.30 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=16.0
Q ss_pred cCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 146 KGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 146 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
.|.-.+|..+|.+|.+.|-|||. |+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 34455566666666666655543 555544
No 382
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.35 E-value=62 Score=23.33 Aligned_cols=14 Identities=29% Similarity=0.359 Sum_probs=5.5
Q ss_pred CCHHHHHHHHHHHH
Q 041458 217 RGVHAAMKLLDDII 230 (568)
Q Consensus 217 ~~~~~a~~~~~~~~ 230 (568)
|+.+.|.++++.+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33334444443333
No 383
>PRK10941 hypothetical protein; Provisional
Probab=60.30 E-value=1.4e+02 Score=27.32 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 041458 451 SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK-GQMPNETTYTILVEGIAH 529 (568)
Q Consensus 451 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~ 529 (568)
+.+-.+|.+.++++.|++..+.+....+. ++.-+.--.-.|.+.|.+..|..=++..++. .-.|+.......+.....
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~~ 263 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIEQ 263 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHhh
Confidence 45556677777788887777777765443 5555665666677777777777777777653 233455555555554443
No 384
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.28 E-value=1.2e+02 Score=26.58 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCCCC----CHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 500 LSLEVFQMMIEKGQMP----NET-TYTILVEGIAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 500 ~a~~~~~~m~~~g~~p----~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
.|.+.|++..+..-.| +.. ..-.+.....+.|+.++|.+++.+++..+..+.
T Consensus 143 ~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 143 KALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 4555555555432121 222 233344566778888888888888887766643
No 385
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=59.76 E-value=1.9e+02 Score=28.79 Aligned_cols=414 Identities=12% Similarity=0.086 Sum_probs=202.7
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH-HHHhcCChhhHHHHHHHH
Q 041458 81 DAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVN-CLCKKGNVGYAMQLVEKM 159 (568)
Q Consensus 81 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~~ 159 (568)
....++++.... .+.|+..|...+..+.+.+.+.+...+|..|....+ .++..|-.-.. -|-...+++.|+.+|..-
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp-~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHP-NNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 345556555544 456888888888777777778888888888887542 23444433222 333344588888888877
Q ss_pred HhCCCCCcHHHHHHHHHH---HHh--------cC-ChHHH-HHHHHHHHH-CCCCCCHhh--HHHH---HHHHHHcCCHH
Q 041458 160 EDYGYPTNTVTYNSLVRG---LCM--------LG-NLNQS-LQFLDRLIQ-KGLVPNAFT--YSFL---LEAAYKERGVH 220 (568)
Q Consensus 160 ~~~~~~~~~~~~~~li~~---~~~--------~g-~~~~a-~~~~~~m~~-~~~~~~~~~--~~~l---i~~~~~~~~~~ 220 (568)
.+.. |.++..|-...+. |+. .| +..+- .++-+.-.+ ....++... +... .+..-......
T Consensus 167 LR~n-pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~k 245 (568)
T KOG2396|consen 167 LRFN-PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLK 245 (568)
T ss_pred hhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHH
Confidence 7652 2234444333322 110 01 11100 111111100 001111111 1100 00111111111
Q ss_pred HH-HHHHHHHHHcCCCCCHhhHHHHH----HHHHh---------------cCChHHHHHHHHHhhhCCCCCChhHHHHHH
Q 041458 221 AA-MKLLDDIIAKGGKPNLVSYNVLL----TGLCK---------------EGRTEEAIRFFRDLPSKGFEPNVVSYNILL 280 (568)
Q Consensus 221 ~a-~~~~~~~~~~~~~~~~~~~~~ll----~~~~~---------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 280 (568)
+- ..+.+.+... .+-++.+|.-+. .++.+ .-+.+....+|++..+. -|+...|+..|
T Consensus 246 el~k~i~d~~~~~-~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI 322 (568)
T KOG2396|consen 246 ELQKNIIDDLQSK-APDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYI 322 (568)
T ss_pred HHHHHHHHHHhcc-CCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHH
Confidence 11 1222223222 222333332221 11111 11223344566665543 34555666666
Q ss_pred HHHHcCC------CHHHHHHHHHHhccCC-C-CcCHhhHHHHHHHHHhcCChHH-HHHHHHHHHHCCCCCCcccHHHHHH
Q 041458 281 RSLCMEG------RWEEANELLAEMDGGD-R-SPTIVTYNILIGSLAYHGKTDH-ALKVLDEMVKGRFRPSAASYNPIIA 351 (568)
Q Consensus 281 ~~~~~~g------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~li~ 351 (568)
..|...- .+...+.+++...+.+ . +.....|..+.-.++......+ |..+..+ ++.-+...|-.-+.
T Consensus 323 ~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e----~f~~s~k~~~~kl~ 398 (568)
T KOG2396|consen 323 TFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTE----LFRDSGKMWQLKLQ 398 (568)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHH----HhcchHHHHHHHHH
Confidence 6654322 3344445555543322 1 2234456666555555544333 3333322 23345555555555
Q ss_pred HHHhc-CCHHH-HHHHHHHHhhCCCCCChhhHHHHHHHHhCCC-HHHH-HHHHHHHhhCCCCCChhh-HHHHHHHHHhcC
Q 041458 352 RLCSE-GKVDL-VVKCLDQMFHRRCKPNEGTYNGLAMLCGVGK-VQEA-FAIIQSLGNKQNSSPQEF-YKYVITSLCRKG 426 (568)
Q Consensus 352 ~~~~~-~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a-~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g 426 (568)
...+. .+++- -..++......-..+....++... .++ .... ..++-........++..+ -+.++.-+-+.|
T Consensus 399 ~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~----~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~ 474 (568)
T KOG2396|consen 399 VLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS----EGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESG 474 (568)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh----hccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhc
Confidence 44422 12221 122233333322222222332221 122 2221 222222222333334443 456777778889
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHccCChHHHHH
Q 041458 427 KTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM--EGLIEEALEIFVVME-EYDYKPDVDNFNALLLGLCKSRRTDLSLE 503 (568)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 503 (568)
-..+|...+..+... .+|+...|..++..-.. .-++.-+.++++.|. ..| .|+..|...+..-...|..+.+-.
T Consensus 475 ~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~ 551 (568)
T KOG2396|consen 475 GYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQ 551 (568)
T ss_pred chHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccH
Confidence 999999999998876 45677777777754321 233788899999998 677 488899888888889999999999
Q ss_pred HHHHHHHC
Q 041458 504 VFQMMIEK 511 (568)
Q Consensus 504 ~~~~m~~~ 511 (568)
++.++.+.
T Consensus 552 ~~~ra~kt 559 (568)
T KOG2396|consen 552 IYWRAMKT 559 (568)
T ss_pred HHHHHHHh
Confidence 88887764
No 386
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.61 E-value=26 Score=23.35 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=15.7
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
|....-.+|.+|...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344455566666666666666555543
No 387
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.37 E-value=35 Score=23.98 Aligned_cols=47 Identities=19% Similarity=0.057 Sum_probs=26.0
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHH
Q 041458 424 RKGKTYQAFQLLYEMTKYGFTPD--SYTYSSLIRGLCMEGLIEEALEIF 470 (568)
Q Consensus 424 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~ 470 (568)
..++.++|+..|....+.-..|. -.++..++.+|+..|++.+.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666554322221 134556666677777776666554
No 388
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=59.10 E-value=2.5e+02 Score=29.95 Aligned_cols=97 Identities=7% Similarity=0.064 Sum_probs=56.8
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHhhHHH
Q 041458 132 DASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLC---MLGNLNQSLQFLDRLIQKGLVPNAFTYSF 208 (568)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 208 (568)
+...+..||..+.+.|++++....-..|.+. .+.++..|...+.... ..++...+..+|++.... ..++..|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d--y~~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD--YNSVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc--cccchHHHH
Confidence 4455667777778888887777666666654 4556667766655443 235556666666665543 234444554
Q ss_pred HHHHHHHc-------CCHHHHHHHHHHHHH
Q 041458 209 LLEAAYKE-------RGVHAAMKLLDDIIA 231 (568)
Q Consensus 209 li~~~~~~-------~~~~~a~~~~~~~~~ 231 (568)
.+...... ++++....+|.+.+.
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHh
Confidence 44444332 345556666666554
No 389
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=58.55 E-value=1.7e+02 Score=27.70 Aligned_cols=107 Identities=8% Similarity=-0.038 Sum_probs=62.6
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcC------------ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHH
Q 041458 86 LERMVSKGHKPDVVQATNLLYDLCKAN------------KMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAM 153 (568)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 153 (568)
|++.++. .+.|+.+|-.++..--..- -.+.-+.+++++.+.+. .+...+..++..+.+..+.++..
T Consensus 8 l~~~v~~-~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 8 LNRRVRE-NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHh-CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 3333343 2447777877775432221 13445667777777643 35666677777777777777777
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhc---CChHHHHHHHHHHH
Q 041458 154 QLVEKMEDYGYPTNTVTYNSLVRGLCML---GNLNQSLQFLDRLI 195 (568)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~ 195 (568)
+.|+++... .+-+...|...+...... -.+.....+|.+..
T Consensus 86 ~~we~~l~~-~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 86 KKWEELLFK-NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHHHH-CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 777777765 233666777766655442 23445555554443
No 390
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=58.15 E-value=2.4e+02 Score=29.54 Aligned_cols=43 Identities=9% Similarity=0.049 Sum_probs=22.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 041458 208 FLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKE 251 (568)
Q Consensus 208 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 251 (568)
.+|-.|.++|++++|.++..+.... .......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3444566777777777766443332 333444555566666553
No 391
>PHA02875 ankyrin repeat protein; Provisional
Probab=57.10 E-value=2e+02 Score=28.23 Aligned_cols=79 Identities=20% Similarity=0.136 Sum_probs=39.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHhh--HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChh--HHHHHHHHHHcC
Q 041458 211 EAAYKERGVHAAMKLLDDIIAKGGKPNLVS--YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVV--SYNILLRSLCME 286 (568)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~ 286 (568)
...++.|+.+.+.. +.+.|..++... ..+.+...+..|+.+-+.-++ +.|..|+.. .....+...+..
T Consensus 7 ~~A~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLM----KHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCccccCCCcccHHHHHHHC
Confidence 34455666655443 445566655432 234455556677765443333 344444322 112234445566
Q ss_pred CCHHHHHHHHH
Q 041458 287 GRWEEANELLA 297 (568)
Q Consensus 287 g~~~~a~~~~~ 297 (568)
|+.+.+..+++
T Consensus 79 g~~~~v~~Ll~ 89 (413)
T PHA02875 79 GDVKAVEELLD 89 (413)
T ss_pred CCHHHHHHHHH
Confidence 77766655554
No 392
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.95 E-value=34 Score=22.77 Aligned_cols=22 Identities=32% Similarity=0.603 Sum_probs=10.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHh
Q 041458 243 VLLTGLCKEGRTEEAIRFFRDL 264 (568)
Q Consensus 243 ~ll~~~~~~g~~~~A~~~~~~~ 264 (568)
.+|.++...|++++|.++.+.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555555555554444
No 393
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=56.80 E-value=2.5e+02 Score=30.20 Aligned_cols=84 Identities=17% Similarity=0.092 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------CCChhhHHHHHHHHH
Q 041458 428 TYQAFQLLYEMT-KYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDY-------------KPDVDNFNALLLGLC 493 (568)
Q Consensus 428 ~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-------------~p~~~~~~~li~~~~ 493 (568)
.++..+.+++.. +.|+..+......+.. ...|++.+|+.++++....+- ..+...+..+++++
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL- 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL- 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 345556666544 3466655555544443 346899999999877653321 01222233333332
Q ss_pred ccCChHHHHHHHHHHHHCCCC
Q 041458 494 KSRRTDLSLEVFQMMIEKGQM 514 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~g~~ 514 (568)
..|+..+++.+++++...|..
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 257 AAGDGPEILAVADEMALRSLS 277 (830)
T ss_pred HcCCHHHHHHHHHHHHHhCCC
Confidence 335666666666666655543
No 394
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=56.68 E-value=1.8e+02 Score=27.60 Aligned_cols=58 Identities=22% Similarity=0.191 Sum_probs=43.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSS---PQEFYKYVITSLCRKGKTYQAFQLLYEMTKY 441 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 441 (568)
+....+.|.++.|...+..+...+... ++...-.-+..+-..|+..+|+..+++..+.
T Consensus 153 a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 153 AKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 556677999999999999988754222 2334444566677889999999999988873
No 395
>PF13934 ELYS: Nuclear pore complex assembly
Probab=55.81 E-value=1.1e+02 Score=27.10 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=9.2
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 041458 104 LLYDLCKANKMKKAIKVMEM 123 (568)
Q Consensus 104 l~~~~~~~~~~~~A~~~~~~ 123 (568)
++..+...|+.+.|+.++..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444444444444444444
No 396
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=55.68 E-value=1.7e+02 Score=26.97 Aligned_cols=151 Identities=15% Similarity=0.087 Sum_probs=80.7
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH----hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----
Q 041458 74 HRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLC----KANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK---- 145 (568)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 145 (568)
...+++..|...+......+ +......+...|. ...+...|.++|..+.+.|. ......|...|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCc
Confidence 34567778888887776533 2234444444443 33467778888887777653 3334445555544
Q ss_pred cCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH---
Q 041458 146 KGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLG-------NLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYK--- 215 (568)
Q Consensus 146 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--- 215 (568)
..+..+|...|++..+.|.++...+...+...|..-. +...|...+.++-..+ +......+...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 3377888888888888774433222333444443321 2225666666655544 22233333322222
Q ss_pred -cCCHHHHHHHHHHHHHcC
Q 041458 216 -ERGVHAAMKLLDDIIAKG 233 (568)
Q Consensus 216 -~~~~~~a~~~~~~~~~~~ 233 (568)
..+.++|...|...-+.|
T Consensus 203 v~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 234555666665555554
No 397
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.39 E-value=2.7e+02 Score=29.17 Aligned_cols=84 Identities=13% Similarity=0.121 Sum_probs=46.6
Q ss_pred hHHHHHHHH-HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-------------CChhhHHHHHHHHHc
Q 041458 429 YQAFQLLYE-MTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK-------------PDVDNFNALLLGLCK 494 (568)
Q Consensus 429 ~~A~~~~~~-~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-------------p~~~~~~~li~~~~~ 494 (568)
++..+.+.+ +.+.|+..+......++. ...|++..+..++++....+-. ++......+++++.
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~- 262 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA- 262 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH-
Confidence 444445543 345677766666666655 3458899998888776543311 11222233344333
Q ss_pred cCChHHHHHHHHHHHHCCCCC
Q 041458 495 SRRTDLSLEVFQMMIEKGQMP 515 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~~~g~~p 515 (568)
.|+...+.++++++.+.|..|
T Consensus 263 ~~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 263 QGDGRTVVETADELRLNGLSA 283 (618)
T ss_pred cCCHHHHHHHHHHHHHcCCCH
Confidence 356666777777666665443
No 398
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=54.46 E-value=82 Score=22.93 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=28.4
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 041458 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEGIAHQDE 532 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~ 532 (568)
|...-..+...+...|++++|++.+-++++..-.. +...-..++..+...|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 55666667777777777777777777777643222 23344444444444444
No 399
>PRK10941 hypothetical protein; Provisional
Probab=54.29 E-value=1.7e+02 Score=26.66 Aligned_cols=79 Identities=9% Similarity=0.029 Sum_probs=61.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--HHHHHHHHHhhh
Q 041458 485 FNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVS--ESAVERLVMQYD 562 (568)
Q Consensus 485 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~ 562 (568)
.+.+-.+|.+.++++.|.+..+.+.... +.|..-+.--.-.|.+.|.+..|..=++.-++.-+.+ ...++..+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 4556678899999999999999999852 3356666666667999999999999999999999884 455566666555
Q ss_pred hc
Q 041458 563 FE 564 (568)
Q Consensus 563 ~~ 564 (568)
.+
T Consensus 263 ~~ 264 (269)
T PRK10941 263 QK 264 (269)
T ss_pred hc
Confidence 44
No 400
>PRK12798 chemotaxis protein; Reviewed
Probab=53.90 E-value=2.2e+02 Score=27.71 Aligned_cols=155 Identities=10% Similarity=0.039 Sum_probs=75.8
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhcCCH
Q 041458 389 GVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLC-RKGKTYQAFQLLYEMTKYGFTPDSY----TYSSLIRGLCMEGLI 463 (568)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~ 463 (568)
-.|+.+++.+.+..+.....++...-+-.|+.+-. ...++.+|+++|+...-. -|... ...--+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 35666666666666665555555555555555433 345667777777665432 23221 222333445566776
Q ss_pred HHHHHHHHHHH-hCCCCCChhhH-HHHHHHHHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHH
Q 041458 464 EEALEIFVVME-EYDYKPDVDNF-NALLLGLCKSRRTDLSLEVFQMMIEKGQMPN--ETTYTILVEGIAHQDELELSAEV 539 (568)
Q Consensus 464 ~~a~~~~~~m~-~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~ 539 (568)
+++..+-.... .....|=...| ..+..++.+.++-..- +.+..++.. +.|+ ...|..+.+.-...|+.+.|...
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 66665554443 22222222212 2222233333321111 113333332 2332 35566666666667777777766
Q ss_pred HHHHHHcC
Q 041458 540 LKELQLRQ 547 (568)
Q Consensus 540 ~~~~~~~~ 547 (568)
.++.....
T Consensus 280 s~~A~~L~ 287 (421)
T PRK12798 280 SERALKLA 287 (421)
T ss_pred HHHHHHhc
Confidence 66666554
No 401
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=53.84 E-value=1.6e+02 Score=26.07 Aligned_cols=102 Identities=11% Similarity=0.091 Sum_probs=69.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHC------------CCCCCHHHHHHHH
Q 041458 457 LCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK------------GQMPNETTYTILV 524 (568)
Q Consensus 457 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------g~~p~~~~~~~ll 524 (568)
|.+..+.+--.++.+-....++.-+......++ +...|+..+|..-++.-..- --.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 334444433344444444445555555555554 45678888888777665431 1257888888888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhh
Q 041458 525 EGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQY 561 (568)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 561 (568)
..|.. +++++|.+.+.++.+.|+.|.+.+..+.+..
T Consensus 247 ~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~FRv~ 282 (333)
T KOG0991|consen 247 QACLK-RNIDEALKILAELWKLGYSPEDIITTLFRVV 282 (333)
T ss_pred HHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88764 6899999999999999999998888776643
No 402
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=53.14 E-value=1.2e+02 Score=24.49 Aligned_cols=82 Identities=12% Similarity=0.160 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----CCCHhhHHHHHHHHHhcCC-hhhHHHHHHHHHhCCCCCcHHHHHH
Q 041458 100 QATNLLYDLCKANKMKKAIKVMEMMVSSGI-----IPDASSYTYLVNCLCKKGN-VGYAMQLVEKMEDYGYPTNTVTYNS 173 (568)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (568)
..+.++.-....+++...+.+++.+..-.. ..+...|..++.+.++... --.+..+|+-|.+.+.+.+..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 356666666777777777777776633210 1234456666665544444 3344555666655555556666666
Q ss_pred HHHHHHhc
Q 041458 174 LVRGLCML 181 (568)
Q Consensus 174 li~~~~~~ 181 (568)
+|.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 66655543
No 403
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.07 E-value=54 Score=20.42 Aligned_cols=25 Identities=4% Similarity=-0.081 Sum_probs=9.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHH
Q 041458 496 RRTDLSLEVFQMMIEKGQMPNETTY 520 (568)
Q Consensus 496 g~~~~a~~~~~~m~~~g~~p~~~~~ 520 (568)
|-.+++..++++|.+.|+.-+...+
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~ 40 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLI 40 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHH
Confidence 3333344444444333333333333
No 404
>PRK11619 lytic murein transglycosylase; Provisional
Probab=53.00 E-value=3e+02 Score=29.05 Aligned_cols=117 Identities=13% Similarity=-0.019 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 041458 390 VGKVQEAFAIIQSLGNKQNSSPQ---EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEA 466 (568)
Q Consensus 390 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 466 (568)
..+.+.|...+........-... ..+..+.......+...+|...+....... .+......-+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 45668888888876544322211 334444444444433566766666544322 2444445555555688899888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 041458 467 LEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMI 509 (568)
Q Consensus 467 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 509 (568)
...+..|.... .-...-.--+.+++...|+.++|..+|+++.
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888876422 1133444456777777899999999998875
No 405
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.74 E-value=64 Score=27.61 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=25.3
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 478 YKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 478 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
..|+...|..++.++...|+.++|.++.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356777777777888888888888877777776
No 406
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=52.14 E-value=36 Score=18.20 Aligned_cols=14 Identities=7% Similarity=0.325 Sum_probs=7.1
Q ss_pred ChHHHHHHHHHHHH
Q 041458 497 RTDLSLEVFQMMIE 510 (568)
Q Consensus 497 ~~~~a~~~~~~m~~ 510 (568)
+.+.|..+|++++.
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 34455555555554
No 407
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.08 E-value=56 Score=20.34 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CHHHHHHHHHh
Q 041458 520 YTILVEGIAHQDELELSAEVLKELQLRQVV-SESAVERLVMQ 560 (568)
Q Consensus 520 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~ 560 (568)
...++. ..+.|...++..++++|.+.|.. +++.+..+++.
T Consensus 6 lGiL~~-Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 6 LGILLL-AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHH-HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 334444 44678889999999999999998 88888877764
No 408
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=51.93 E-value=2.1e+02 Score=26.86 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCC----CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHH
Q 041458 220 HAAMKLLDDIIAKGG----KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANEL 295 (568)
Q Consensus 220 ~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 295 (568)
+.|.+.|+.....+. ..+......++....+.|..+.-..+++..... ++......++.+.+...+.+...++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHH
Confidence 455666666665311 234444455555556666655555555444432 2455556666666666676666667
Q ss_pred HHHhccCC
Q 041458 296 LAEMDGGD 303 (568)
Q Consensus 296 ~~~~~~~~ 303 (568)
++.+...+
T Consensus 224 l~~~l~~~ 231 (324)
T PF11838_consen 224 LDLLLSND 231 (324)
T ss_dssp HHHHHCTS
T ss_pred HHHHcCCc
Confidence 76666543
No 409
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=51.34 E-value=75 Score=22.85 Aligned_cols=48 Identities=8% Similarity=0.039 Sum_probs=28.8
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 041458 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQ 530 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 530 (568)
.......++..+.. ++++++...+.++...|+.+ ......+...+...
T Consensus 4 ~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~-~~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 4 PPEVIEEILESCLN-GDFKEARKKLYELLVEGYSA-SDILKQLHEVLVES 51 (89)
T ss_dssp -HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--H-HHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHh
Confidence 44455556665544 58888888888888877554 34445555555555
No 410
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=51.08 E-value=2e+02 Score=26.47 Aligned_cols=151 Identities=18% Similarity=0.097 Sum_probs=84.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----c
Q 041458 110 KANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK----KGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM----L 181 (568)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 181 (568)
..+++..+...+......+ +......+...|.. ..+..+|.++|....+.| .......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 4566777777777776643 33344444444443 345777888888777765 34444456666554 3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----
Q 041458 182 GNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKER-------GVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCK---- 250 (568)
Q Consensus 182 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---- 250 (568)
.+..+|...|++..+.|..+-..+...+-..+..-. +...|...+.+.-..+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 478888888888888775433122222332222211 2235666666666654 33333333333322
Q ss_pred cCChHHHHHHHHHhhhCCC
Q 041458 251 EGRTEEAIRFFRDLPSKGF 269 (568)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~ 269 (568)
..+.++|...|....+.|.
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC
Confidence 2356677777776666543
No 411
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.67 E-value=97 Score=22.67 Aligned_cols=18 Identities=17% Similarity=0.075 Sum_probs=8.5
Q ss_pred HHhcCChhHHHHHHHHHH
Q 041458 527 IAHQDELELSAEVLKELQ 544 (568)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~ 544 (568)
....|++++|.+.+++.+
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 334445555554444444
No 412
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.13 E-value=72 Score=23.35 Aligned_cols=53 Identities=13% Similarity=0.003 Sum_probs=32.4
Q ss_pred HhcCCHHHHHHHHHHHHh----CCCCC----ChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 458 CMEGLIEEALEIFVVMEE----YDYKP----DVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 458 ~~~g~~~~a~~~~~~m~~----~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
.+.|++.+|.+.+.+.-+ .+... -....-.+.......|++++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456777777555554432 22211 112233455567788999999999999876
No 413
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.53 E-value=2e+02 Score=26.07 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=14.9
Q ss_pred ChhHHHHHHHHHHcCCCHHHHHHHH
Q 041458 272 NVVSYNILLRSLCMEGRWEEANELL 296 (568)
Q Consensus 272 ~~~~~~~l~~~~~~~g~~~~a~~~~ 296 (568)
|+.....+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4555666666677777776666655
No 414
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.27 E-value=1.3e+02 Score=25.43 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=11.4
Q ss_pred HHHccCChHHHHHHHHHHHH
Q 041458 491 GLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~ 510 (568)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45555666666666655554
No 415
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.95 E-value=3.1e+02 Score=27.95 Aligned_cols=84 Identities=10% Similarity=0.064 Sum_probs=45.2
Q ss_pred hhHHHHHHHHH-HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh------------HHHHHHHHHc
Q 041458 428 TYQAFQLLYEM-TKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDN------------FNALLLGLCK 494 (568)
Q Consensus 428 ~~~A~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------~~~li~~~~~ 494 (568)
.++..+.+.+. .+.|+..+......++... .|++..+...++.+...+-..+... ...+++++ .
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~ 253 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-A 253 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-H
Confidence 34455555543 3457766666655555433 5888888888887664431112111 12233333 3
Q ss_pred cCChHHHHHHHHHHHHCCCC
Q 041458 495 SRRTDLSLEVFQMMIEKGQM 514 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~~~g~~ 514 (568)
.++.++|..+++++...|..
T Consensus 254 ~~d~~~Al~~l~~Ll~~G~~ 273 (504)
T PRK14963 254 QGDAAEALSGAAQLYRDGFA 273 (504)
T ss_pred cCCHHHHHHHHHHHHHcCCC
Confidence 35666666666666665533
No 416
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.68 E-value=1.3e+02 Score=23.60 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 041458 500 LSLEVFQMMIEKGQMP-NETTYTILVEGIAHQDELELSAEVLKE 542 (568)
Q Consensus 500 ~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 542 (568)
.+.++|+.|..+|+.- -+..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5555555555544432 234444444455555555555555543
No 417
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=48.17 E-value=2.2e+02 Score=27.72 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=32.0
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHHHH--hcCChhhHHHHHHHHHhC
Q 041458 107 DLCKANKMKKAIKVMEMMVSSGIIPDAS--SYTYLVNCLC--KKGNVGYAMQLVEKMEDY 162 (568)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~a~~~~~~~~~~ 162 (568)
.+.+.+++..|.++|+.+.++ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444667777777777777765 333333 3344444443 345666777777766543
No 418
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=48.10 E-value=1.2e+02 Score=27.97 Aligned_cols=71 Identities=20% Similarity=0.260 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH----------cCCHHHH
Q 041458 153 MQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYK----------ERGVHAA 222 (568)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----------~~~~~~a 222 (568)
.++++.+.+.++.|.-.++.-+.-.+.+.=.+.+++.+++.+.. |..-|..++..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 35566666666666666666555556666666666777766654 22224444444432 4677777
Q ss_pred HHHHHH
Q 041458 223 MKLLDD 228 (568)
Q Consensus 223 ~~~~~~ 228 (568)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 666654
No 419
>PRK11619 lytic murein transglycosylase; Provisional
Probab=47.70 E-value=3.7e+02 Score=28.46 Aligned_cols=48 Identities=8% Similarity=-0.086 Sum_probs=24.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 041458 420 TSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIF 470 (568)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 470 (568)
..+...|....|...+..+... .+......+.......|..+.+....
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~ 462 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQAT 462 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3445566666777666666553 22333334444444555555554433
No 420
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.45 E-value=3.1e+02 Score=27.58 Aligned_cols=108 Identities=10% Similarity=-0.046 Sum_probs=53.9
Q ss_pred hHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 041458 429 YQAFQLLYEMT-KYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQM 507 (568)
Q Consensus 429 ~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 507 (568)
++..+.+.+.. ..|+..+......++. ...|++..|+.++++....+- ...++..+...
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~--~~it~~~V~~~---------------- 242 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTD--SKLTGVKIRKM---------------- 242 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCC--CCcCHHHHHHH----------------
Confidence 34445555443 3566666666554443 346899999999987653211 11222222111
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHh
Q 041458 508 MIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQ 560 (568)
Q Consensus 508 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 560 (568)
. |. ++...+..++.++...+....|..++.++.+.|..+...+..++..
T Consensus 243 -l--g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~ 291 (484)
T PRK14956 243 -I--GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEF 291 (484)
T ss_pred -h--CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 21 2444444455544444444455555555555555555444444433
No 421
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=47.19 E-value=54 Score=32.08 Aligned_cols=49 Identities=14% Similarity=0.008 Sum_probs=20.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 041458 425 KGKTYQAFQLLYEMTKYGFTPDSYTY-SSLIRGLCMEGLIEEALEIFVVMEE 475 (568)
Q Consensus 425 ~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~ 475 (568)
.+.++.|..++.+.++. .||...| ..-..++.+.+++..|+.=+..+.+
T Consensus 17 ~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred cchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 34444555555554442 3333222 2222444444444444444444443
No 422
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=46.83 E-value=1.1e+02 Score=22.13 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=21.6
Q ss_pred hcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHH
Q 041458 250 KEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEA 292 (568)
Q Consensus 250 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 292 (568)
..|+.+.|.+++..+. . .+..|..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-r----g~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-Q----KEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-c----CCcHHHHHHHHHHHcCchhhh
Confidence 4466666666666666 4 233556666666655554433
No 423
>PRK09462 fur ferric uptake regulator; Provisional
Probab=46.41 E-value=1.3e+02 Score=24.37 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHhhhhcC
Q 041458 535 LSAEVLKELQLRQVV-SESAVERLVMQYDFEG 565 (568)
Q Consensus 535 ~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 565 (568)
.|.++++.+.+.++. +..++.+-+..+...|
T Consensus 35 sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 444455555444443 4444444444444444
No 424
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=45.78 E-value=2.9e+02 Score=26.66 Aligned_cols=126 Identities=11% Similarity=0.111 Sum_probs=71.5
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHH--
Q 041458 96 PDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNS-- 173 (568)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-- 173 (568)
-.+.+...+...+.++|+.+.|.++.+++.-. -..++......+.....-..+ + .....+-|...|.+
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~----~e~~~~~~F~~~~~~~~~g~~-----r-L~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFA----FERAFHPSFSPFRSNLTSGNC-----R-LDYRRPENRQFFLALF 107 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHHHHHhhhhhcccccCcc-----c-cCCccccchHHHHHHH
Confidence 35556666777777788888887777776521 001111111110000000000 0 00011224444444
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 041458 174 -LVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAY-KERGVHAAMKLLDDIIA 231 (568)
Q Consensus 174 -li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~ 231 (568)
.|..+.+.|.+..|+++.+-+...+..-|+..-..+|+.|+ +.++++--+++.+....
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 35667788899999999888888766657777777777665 67777777777776554
No 425
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=45.77 E-value=3.1e+02 Score=27.14 Aligned_cols=126 Identities=10% Similarity=0.072 Sum_probs=84.1
Q ss_pred HHHHHHhcCChhHHH-HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 041458 104 LLYDLCKANKMKKAI-KVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLG 182 (568)
Q Consensus 104 l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 182 (568)
-|..-...|++-.|- +++..+......|+.....+. .+...|+++.+.+.+...... +.....+...+++...+.|
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchh
Confidence 344445667776664 455555554444554444443 456778999998888665543 3345677888999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 041458 183 NLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKG 233 (568)
Q Consensus 183 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 233 (568)
++++|...-.-|....++ ++..........-..|-++++.-.|+++....
T Consensus 372 r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 372 RWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999999999888876555 44444444444455677888888888876653
No 426
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=45.74 E-value=4.1e+02 Score=28.48 Aligned_cols=99 Identities=12% Similarity=0.041 Sum_probs=64.4
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH---HhcCChhhHHHHHHHHHhCCCCCcHHHH
Q 041458 95 KPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCL---CKKGNVGYAMQLVEKMEDYGYPTNTVTY 171 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 171 (568)
.-+...+..||..+.+.|++++...--..|.+.- +.++..|...+... ...+....+..+|++.... ..++..|
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d--y~~v~iw 186 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD--YNSVPIW 186 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc--cccchHH
Confidence 3466778889999999999988777766666642 33566666555433 3456777888888877643 2345556
Q ss_pred HHHHHHHHhc-------CChHHHHHHHHHHHH
Q 041458 172 NSLVRGLCML-------GNLNQSLQFLDRLIQ 196 (568)
Q Consensus 172 ~~li~~~~~~-------g~~~~a~~~~~~m~~ 196 (568)
.-.+...... ++++....+|.+...
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHh
Confidence 6656555433 456666677776654
No 427
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.64 E-value=1.6e+02 Score=30.34 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=42.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCChhhHHHH
Q 041458 417 YVITSLCRKGKTYQAFQLLYEMTKYG--FTPDSYTYSSLIRGLCMEGLIE------EALEIFVVMEEYDYKPDVDNFNAL 488 (568)
Q Consensus 417 ~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~------~a~~~~~~m~~~~~~p~~~~~~~l 488 (568)
++..+|...|++..+.++++...... -+.-...+|..++...+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67777777788777777777776532 2222335666666667776543 3334443333 23355666655
Q ss_pred HHHH
Q 041458 489 LLGL 492 (568)
Q Consensus 489 i~~~ 492 (568)
+.+-
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 5543
No 428
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=44.82 E-value=2.3e+02 Score=26.31 Aligned_cols=112 Identities=14% Similarity=0.198 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 041458 137 TYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKE 216 (568)
Q Consensus 137 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 216 (568)
..++..+.+..++....+.+..+. ....-...+..+...|++..|++++.+..+. .. .-.-|+++=..-
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L~--- 170 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHLS--- 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHHh---
Confidence 344555566666666666665554 3344455666777788888888887776553 00 111111111111
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHhhHHHHHHHHHhcCChHHHHH
Q 041458 217 RGVHAAMKLLDDIIAK-----GGKPNLVSYNVLLTGLCKEGRTEEAIR 259 (568)
Q Consensus 217 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~A~~ 259 (568)
.++++-....+++.+. -..-|+..|..+..+|.-.|+...+.+
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 1122222222222211 113477788888888888887665553
No 429
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.81 E-value=42 Score=30.74 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=26.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTY 450 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 450 (568)
.|+..|....+.||+++|++++++..+.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4667777777888888888888888777765333344
No 430
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.54 E-value=47 Score=30.46 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=19.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH
Q 041458 485 FNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETT 519 (568)
Q Consensus 485 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 519 (568)
|+..|....+.|++++|+++++++.+.|..--..+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 34555556666666666666666666554433333
No 431
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=44.36 E-value=2.2e+02 Score=25.02 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=26.6
Q ss_pred cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CcccH--HHHHHHHHhcCCHHHHHHHHHHHh
Q 041458 306 PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRP---SAASY--NPIIARLCSEGKVDLVVKCLDQMF 370 (568)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~--~~li~~~~~~~~~~~a~~~~~~~~ 370 (568)
++..-++.|+--|.-...+.+|-+.|..- .|+.| |..++ ..-|......|+.+.|++..+++.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 33444455554454444444444444322 22222 11111 122334445555555555555443
No 432
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.53 E-value=2e+02 Score=24.36 Aligned_cols=28 Identities=29% Similarity=0.229 Sum_probs=22.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 523 LVEGIAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
.+-.|.+.|.+++|.+++++... ++.+.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~ 144 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQ 144 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCch
Confidence 35579999999999999999998 44433
No 433
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=43.14 E-value=2.3e+02 Score=29.33 Aligned_cols=90 Identities=12% Similarity=0.173 Sum_probs=56.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCChh------hHHHHHHHHHhCCCCCcHHHHHHH
Q 041458 103 NLLYDLCKANKMKKAIKVMEMMVSSGI--IPDASSYTYLVNCLCKKGNVG------YAMQLVEKMEDYGYPTNTVTYNSL 174 (568)
Q Consensus 103 ~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 174 (568)
+|+.+|..+|++.++.++++.....+- ..-...+|..|+-..+.|.++ .|.++++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 788999999999999999998876531 112345777788888888764 3444444443 33477777777
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 041458 175 VRGLCMLGNLNQSLQFLDRLI 195 (568)
Q Consensus 175 i~~~~~~g~~~~a~~~~~~m~ 195 (568)
+.+-..--+-.-..-++.+++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 766544333333333444443
No 434
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=42.94 E-value=1.5e+02 Score=22.51 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHH
Q 041458 218 GVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLA 297 (568)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 297 (568)
..++|..+.+-+...+.. ...+--+-+..+.+.|++++|+ ..- .....||...|-+|. -.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~AL--l~~--~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEAL--LLP--QCHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHH--HHH--TTS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHH--Hhc--ccCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 345555555555444321 1122222333445566666661 111 112245555554432 345566666666666
Q ss_pred HhccCC
Q 041458 298 EMDGGD 303 (568)
Q Consensus 298 ~~~~~~ 303 (568)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 555444
No 435
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.77 E-value=3.3e+02 Score=26.50 Aligned_cols=56 Identities=18% Similarity=0.112 Sum_probs=30.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChh--hHHHHHHHHH--hcCChhHHHHHHHHHHH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQE--FYKYVITSLC--RKGKTYQAFQLLYEMTK 440 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~~~~ 440 (568)
+..+...+++..|.++|..+... .+++.. .+..+..+|. ..-++.+|.+.++....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44555667777777777766665 222222 3334444443 24455666666665544
No 436
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=42.27 E-value=92 Score=19.97 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=15.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHH
Q 041458 488 LLLGLCKSRRTDLSLEVFQMMIEKGQMPNETT 519 (568)
Q Consensus 488 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 519 (568)
+.-++.+.|++++|.+..+.+.+ +.|+..-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHH
Confidence 33455566666666666666665 3554433
No 437
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.21 E-value=1.9e+02 Score=24.17 Aligned_cols=60 Identities=7% Similarity=-0.002 Sum_probs=32.9
Q ss_pred HhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 041458 474 EEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELE 534 (568)
Q Consensus 474 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 534 (568)
.+.|+.++.. -..++..+...++.-.|.++++.+.+.+...+..|.-.-|..+...|-+.
T Consensus 18 ~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3455553332 23444444444555567777777766655555555555556666666544
No 438
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=39.80 E-value=1.8e+02 Score=22.78 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 041458 500 LSLEVFQMMIEKGQMPN-ETTYTILVEGIAHQDELELSAEVLK 541 (568)
Q Consensus 500 ~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 541 (568)
+..++|+.|..+|+--. +..|......+-..|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35667777777665443 3445555566667777777777765
No 439
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=39.35 E-value=3.2e+02 Score=25.39 Aligned_cols=72 Identities=22% Similarity=0.324 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHc----------CCCHHHH
Q 041458 223 MKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCM----------EGRWEEA 292 (568)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~a 292 (568)
.++++.+...++.|.-.++.-+.-.+.+.=.+.+.+.+|+.+... ..-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 356666666666776666665555566666677777777766642 2224444444443 4677777
Q ss_pred HHHHHHh
Q 041458 293 NELLAEM 299 (568)
Q Consensus 293 ~~~~~~~ 299 (568)
+++++.-
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 7666554
No 440
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.06 E-value=3.4e+02 Score=29.37 Aligned_cols=131 Identities=13% Similarity=0.115 Sum_probs=78.4
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH
Q 041458 142 CLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHA 221 (568)
Q Consensus 142 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 221 (568)
.+..+|+++.|++.-.++- +..+|..|.....+.|+.+-|+..|++.... ..|--.|.-.|+.++
T Consensus 652 LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf---------ekLsfLYliTgn~eK 716 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKNF---------EKLSFLYLITGNLEK 716 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh---------hheeEEEEEeCCHHH
Confidence 3456788888877654442 6778888888888888888888888876543 222223445677777
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 041458 222 AMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDG 301 (568)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 301 (568)
-.++.+....+ .|..+ ......-.|+.++-.++++.--.. + ..|- .-...|.-++|.++.++...
T Consensus 717 L~Km~~iae~r---~D~~~---~~qnalYl~dv~ervkIl~n~g~~----~-layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 717 LSKMMKIAEIR---NDATG---QFQNALYLGDVKERVKILENGGQL----P-LAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHHHhh---hhhHH---HHHHHHHhccHHHHHHHHHhcCcc----c-HHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 66665554433 12211 111122357777777777654322 1 1121 12346777888888888765
Q ss_pred C
Q 041458 302 G 302 (568)
Q Consensus 302 ~ 302 (568)
.
T Consensus 782 ~ 782 (1202)
T KOG0292|consen 782 Q 782 (1202)
T ss_pred c
Confidence 3
No 441
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=38.44 E-value=66 Score=28.18 Aligned_cols=54 Identities=19% Similarity=0.089 Sum_probs=34.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 457 LCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 457 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
..+.++.+.+.+++.+..+.-.+ ....|-.+...--+.|+++.|.+-+++..+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34556677777777776654333 4556666666666777777777777776664
No 442
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=38.34 E-value=2.7e+02 Score=24.35 Aligned_cols=64 Identities=16% Similarity=-0.005 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 041458 449 TYSSLIRGLCMEGL-------IEEALEIFVVMEEYDYKP-----DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKG 512 (568)
Q Consensus 449 ~~~~l~~~~~~~g~-------~~~a~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 512 (568)
.+.-+.+.|...|+ +..|.+.|.+..+..-.| +....-.+.....+.|+.++|.+.|.+++..+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 44555666666666 345666666555322111 12333445667788999999999999998754
No 443
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=38.01 E-value=4.5e+02 Score=26.77 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------C----------CCChhhHHHHHH
Q 041458 428 TYQAFQLLYEMT-KYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYD------Y----------KPDVDNFNALLL 490 (568)
Q Consensus 428 ~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~------~----------~p~~~~~~~li~ 490 (568)
.++..+.+.... +.|+..+......++.. ..|++..|...++++...+ + .++....-.+++
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ 266 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVE 266 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHH
Confidence 445555555443 45776666666655553 4689999999998875421 1 011222223344
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCC
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMP 515 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p 515 (568)
+. ..|+.++|..+++++...|..|
T Consensus 267 ai-~~~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 267 YI-IHRETEKAINLINKLYGSSVNL 290 (507)
T ss_pred HH-HcCCHHHHHHHHHHHHHcCCCH
Confidence 33 3367777777777777766554
No 444
>PRK14136 recX recombination regulator RecX; Provisional
Probab=37.83 E-value=3.4e+02 Score=25.23 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHCCCCCCh
Q 041458 429 YQAFQLLYEMTKYGFTPDS 447 (568)
Q Consensus 429 ~~A~~~~~~~~~~~~~p~~ 447 (568)
+....++..+.+.|+.-|.
T Consensus 194 e~IE~VIerLke~gYLDDe 212 (309)
T PRK14136 194 DSVEPLLDALEREGWLSDA 212 (309)
T ss_pred HHHHHHHHHHHHcCCcCHH
Confidence 3444555556665555443
No 445
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=37.69 E-value=88 Score=23.92 Aligned_cols=45 Identities=18% Similarity=0.090 Sum_probs=21.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 041458 489 LLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDEL 533 (568)
Q Consensus 489 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 533 (568)
+..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-.
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 333334444445555555555554444444444444455554443
No 446
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=37.51 E-value=3.2e+02 Score=24.84 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=45.0
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 041458 307 TIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAM 386 (568)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 386 (568)
|+.....+...|.+.|++.+|+..|-.-. .++...+..++......|...+ ++.....++..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~~~e--------------~dlfi~RaVL~ 150 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGYPSE--------------ADLFIARAVLQ 150 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS----------------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcCCcc--------------hhHHHHHHHHH
Confidence 56677778888888888888886653221 1222222123322222222221 23333344778
Q ss_pred HHhCCCHHHHHHHHHHHhhC
Q 041458 387 LCGVGKVQEAFAIIQSLGNK 406 (568)
Q Consensus 387 ~~~~~~~~~a~~~~~~~~~~ 406 (568)
|...++...|...+....+.
T Consensus 151 yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 88888888888887766544
No 447
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=37.45 E-value=2.2e+02 Score=23.03 Aligned_cols=82 Identities=13% Similarity=0.183 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCChhhHHHHHHHHHccCC-hHHHHHHHHHHHHCCCCCCHHHHHH
Q 041458 450 YSSLIRGLCMEGLIEEALEIFVVMEEY------DYKPDVDNFNALLLGLCKSRR-TDLSLEVFQMMIEKGQMPNETTYTI 522 (568)
Q Consensus 450 ~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ 522 (568)
.+.++.-....++..-...+++.+... |. .+...|.+++.+.....- .--+..+|+-|.+.+.+++..-|..
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~-~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGW-LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhh-cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456666556666666666665555311 11 256678888888866555 3456777777777777888888888
Q ss_pred HHHHHHhcCC
Q 041458 523 LVEGIAHQDE 532 (568)
Q Consensus 523 ll~~~~~~g~ 532 (568)
++.++.+...
T Consensus 121 li~~~l~g~~ 130 (145)
T PF13762_consen 121 LIKAALRGYF 130 (145)
T ss_pred HHHHHHcCCC
Confidence 8888876533
No 448
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=37.20 E-value=4.1e+02 Score=26.02 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH--hCC-----CCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 041458 451 SSLIRGLCMEGLIEEALEIFVVME--EYD-----YKPDVDNFNALLLGLCKSRRTDLSLEVFQMM 508 (568)
Q Consensus 451 ~~l~~~~~~~g~~~~a~~~~~~m~--~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 508 (568)
..|++..+-.||+..|++.++.+. +.+ ..-.+.++-.+.-+|...+++.+|.+.|...
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554432 110 1112233444444555555555555555443
No 449
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=36.89 E-value=1.1e+02 Score=29.99 Aligned_cols=32 Identities=9% Similarity=-0.019 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 520 YTILVEGIAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 520 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
++.-+..+.+++++..|..+.+++++.++.+.
T Consensus 303 Lr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 303 LRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 34444555666666666666666666666543
No 450
>PRK09857 putative transposase; Provisional
Probab=36.33 E-value=2.4e+02 Score=26.17 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=11.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCC
Q 041458 488 LLLGLCKSRRTDLSLEVFQMMIEKGQM 514 (568)
Q Consensus 488 li~~~~~~g~~~~a~~~~~~m~~~g~~ 514 (568)
+..-+...|.-+++.++.++|...|+.
T Consensus 246 iAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 246 IAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333333334334444444444444433
No 451
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=36.26 E-value=72 Score=24.68 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=22.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCC-CHHHHHHHHHhhhhcCC
Q 041458 523 LVEGIAHQDELELSAEVLKELQLRQVV-SESAVERLVMQYDFEGI 566 (568)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 566 (568)
++..+...+..=.|.++++.+.+.++. +..++.+-+..+...|+
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 344444444444555566666555544 55555555555555553
No 452
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=36.09 E-value=1.2e+02 Score=29.83 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=73.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC
Q 041458 455 RGLCMEGLIEEALEIFVVMEEYDYKPDVD-NFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE-TTYTILVEGIAHQDE 532 (568)
Q Consensus 455 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~ 532 (568)
.-+...+.++.|..++.++.+. .||-. .|..-..++.+.+++..|..=+..+++. .|+. ..|..=..+|.+.++
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHHH
Confidence 4455678899999999999875 45444 4444447889999999999888888875 3432 344344456777788
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHH
Q 041458 533 LELSAEVLKELQLRQVVSESAVERLV 558 (568)
Q Consensus 533 ~~~a~~~~~~~~~~~~~~~~~~~~l~ 558 (568)
+.+|...++......+.++.+.+.+-
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 99999999999999988777655543
No 453
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.76 E-value=1.6e+02 Score=26.47 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=12.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 041458 452 SLIRGLCMEGLIEEALEIFVVM 473 (568)
Q Consensus 452 ~l~~~~~~~g~~~~a~~~~~~m 473 (568)
.+..-|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444455555555555555554
No 454
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=35.57 E-value=5.4e+02 Score=26.94 Aligned_cols=85 Identities=16% Similarity=0.179 Sum_probs=50.4
Q ss_pred hhHHHHHHHHH-HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------------CCCChhhHHHHHHHH
Q 041458 428 TYQAFQLLYEM-TKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYD--------------YKPDVDNFNALLLGL 492 (568)
Q Consensus 428 ~~~A~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--------------~~p~~~~~~~li~~~ 492 (568)
.++....+.+. .+.|+..+......++.. ..|++..+...++++...+ .. +....-.++++.
T Consensus 193 ~~el~~~L~~i~~kegi~i~~eAl~lIa~~--a~Gdlr~al~~Ldkli~~g~g~It~e~V~~llg~~-~~~~if~L~~ai 269 (598)
T PRK09111 193 ADVLAAHLSRIAAKEGVEVEDEALALIARA--AEGSVRDGLSLLDQAIAHGAGEVTAEAVRDMLGLA-DRARVIDLFEAL 269 (598)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhhcCCCcCHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34455555543 345666666665555543 3589999999998875433 11 122222344433
Q ss_pred HccCChHHHHHHHHHHHHCCCCCC
Q 041458 493 CKSRRTDLSLEVFQMMIEKGQMPN 516 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~g~~p~ 516 (568)
..|+.+.|..+++.+...|..|-
T Consensus 270 -~~gd~~~Al~~l~~l~~~G~~p~ 292 (598)
T PRK09111 270 -MRGDVAAALAEFRAQYDAGADPV 292 (598)
T ss_pred -HcCCHHHHHHHHHHHHHcCCCHH
Confidence 44788888888888887765553
No 455
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.29 E-value=2.2e+02 Score=25.62 Aligned_cols=55 Identities=15% Similarity=0.074 Sum_probs=28.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhccC----C-CCcCHhhHHHHHHHHHhcCChHHHHHHHH
Q 041458 278 ILLRSLCMEGRWEEANELLAEMDGG----D-RSPTIVTYNILIGSLAYHGKTDHALKVLD 332 (568)
Q Consensus 278 ~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (568)
.+...|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+....+--
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4556667777777777777665211 1 11223334444555555555555554433
No 456
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.06 E-value=46 Score=30.99 Aligned_cols=19 Identities=0% Similarity=-0.149 Sum_probs=9.2
Q ss_pred cCChHHHHHHHHHHHHCCC
Q 041458 495 SRRTDLSLEVFQMMIEKGQ 513 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~~~g~ 513 (568)
.|++++|...+....+.++
T Consensus 195 lg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 195 LGNWEEAAHDLALACKLDY 213 (377)
T ss_pred hhchHHHHHHHHHHHhccc
Confidence 4455555555555544433
No 457
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.68 E-value=5.2e+02 Score=26.49 Aligned_cols=49 Identities=10% Similarity=-0.057 Sum_probs=28.4
Q ss_pred ccCChHHHHHHHHHHHhCCCC-----------CCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 041458 75 RDHKLNDAFLQLERMVSKGHK-----------PDVVQATNLLYDLCKANKMKKAIKVMEM 123 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 123 (568)
....+++|...|.-.+....+ -.+.+...+...+..+|+.+-|..+.++
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR 309 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIER 309 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHH
Confidence 456677777777665554211 1233445556667777777766555544
No 458
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.62 E-value=6.3e+02 Score=27.44 Aligned_cols=289 Identities=11% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChH
Q 041458 246 TGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTD 325 (568)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (568)
..|...|+++.|+++-+.-.+. -..++..-...|...+++..|-+++.++ ...+..+.--+....+.+
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~----le~Vl~~qAdf~f~~k~y~~AA~~yA~t--------~~~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDA----LETVLLKQADFLFQDKEYLRAAEIYAET--------LSSFEEVALKFLEINQER 433 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHh--------hhhHHHHHHHHHhcCCHH
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHH------hcCCHH------------HHHHHHHHHhhCCCCCChhhHHH--HH
Q 041458 326 HALKVLDEMVKGRFRPSAASYNPIIARLC------SEGKVD------------LVVKCLDQMFHRRCKPNEGTYNG--LA 385 (568)
Q Consensus 326 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~------~~~~~~------------~a~~~~~~~~~~~~~~~~~~~~~--~~ 385 (568)
++..|-.=.-..++|...+-..++..+. +.++.+ .-..+-+++...........-+. ..
T Consensus 434 -~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~ 512 (911)
T KOG2034|consen 434 -ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQ 512 (911)
T ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHH
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH-------------------------HH
Q 041458 386 MLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEM-------------------------TK 440 (568)
Q Consensus 386 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------------------------~~ 440 (568)
.....|+.++...+-.-+.. |..++.-+.+.+.+++|++++..- ..
T Consensus 513 l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~wm~ 583 (911)
T KOG2034|consen 513 LLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVSAWMA 583 (911)
T ss_pred HHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHHHH
Q ss_pred CCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 041458 441 YGFTPDSYTYSSLIRGLCME---GLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE 517 (568)
Q Consensus 441 ~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 517 (568)
.+-.....-...++..+.+. .....+..+++-....-..-+...+|.++..|.+..+-+.-..+-..+...+. ..
T Consensus 584 ~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~--~~ 661 (911)
T KOG2034|consen 584 QKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSR--VH 661 (911)
T ss_pred ccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhcccc--ce
Q ss_pred HHHHHHHHHHHhcCC------hhHHHHHHHHHHHcCCC-CHHHHHHHH
Q 041458 518 TTYTILVEGIAHQDE------LELSAEVLKELQLRQVV-SESAVERLV 558 (568)
Q Consensus 518 ~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~-~~~~~~~l~ 558 (568)
.-....++.|.+.+. +..+.+.++++++.-.. +.+.....+
T Consensus 662 YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~~d~dlak~~A 709 (911)
T KOG2034|consen 662 YDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQFDIDLAKVIA 709 (911)
T ss_pred ecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhhcCHHHHhhhh
No 459
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.26 E-value=2.1e+02 Score=21.75 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 310 TYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366677777777777777777776665
No 460
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.09 E-value=3.9e+02 Score=24.80 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=25.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041458 210 LEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPS 266 (568)
Q Consensus 210 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 266 (568)
+....+.++.....+.+..+. ....-...+..+...|++..|+++..+..+
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 333444444444444444443 222334455555667777777777666543
No 461
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.04 E-value=2.5e+02 Score=22.75 Aligned_cols=27 Identities=15% Similarity=-0.006 Sum_probs=12.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041458 453 LIRGLCMEGLIEEALEIFVVMEEYDYK 479 (568)
Q Consensus 453 l~~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (568)
++..+...++.-.|.++++.+.+.++.
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~ 52 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPG 52 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCC
Confidence 334444444444455555555444333
No 462
>PLN03025 replication factor C subunit; Provisional
Probab=33.98 E-value=4.1e+02 Score=25.02 Aligned_cols=87 Identities=10% Similarity=0.106 Sum_probs=52.8
Q ss_pred hHHHHHHHHH-HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-C----------CCChhhHHHHHHHHHcc
Q 041458 429 YQAFQLLYEM-TKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEY-D-Y----------KPDVDNFNALLLGLCKS 495 (568)
Q Consensus 429 ~~A~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~-~----------~p~~~~~~~li~~~~~~ 495 (568)
++....+... .+.|+..+......++.. ..|++..+...++..... + + .+.......+++.. ..
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~--~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~-~~ 237 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFT--ADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNC-LK 237 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHH-Hc
Confidence 4445555543 456777777777777654 368999999988854321 1 0 11222233344443 45
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH
Q 041458 496 RRTDLSLEVFQMMIEKGQMPNET 518 (568)
Q Consensus 496 g~~~~a~~~~~~m~~~g~~p~~~ 518 (568)
+++++|...+.++...|..|...
T Consensus 238 ~~~~~a~~~l~~ll~~g~~~~~I 260 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYSPTDI 260 (319)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 77888888888888877666543
No 463
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.79 E-value=4.1e+02 Score=24.98 Aligned_cols=180 Identities=13% Similarity=0.056 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHH
Q 041458 217 RGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELL 296 (568)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 296 (568)
++.+....++..+.+. +...|...+.. +..++.|...++.|... +..++++-.+..
T Consensus 36 ~~~~~~e~l~~~Ird~----~Map~Ye~lce------------------~~~i~~D~~~l~~m~~~--neeki~eld~~i 91 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDE----DMAPLYEYLCE------------------SLVIKLDQDLLNSMKKA--NEEKIKELDEKI 91 (393)
T ss_pred cCHHHHHHHHHHHHhc----ccchHHHHHHh------------------hcceeccHHHHHHHHHh--hHHHHHHHHHHH
Q ss_pred HHhccC-CCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCcccHHHHHH-HHHhcCCHHHHHHHHHHHh
Q 041458 297 AEMDGG-DRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG----RFRPSAASYNPIIA-RLCSEGKVDLVVKCLDQMF 370 (568)
Q Consensus 297 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~ 370 (568)
+...+. |-..-...+.....-|++-|+.+.|++.+.+..+. |.+.|+..+..-+. .|....-..+-++..+.+.
T Consensus 92 edaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~li 171 (393)
T KOG0687|consen 92 EDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLI 171 (393)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q ss_pred hCCCCCChhhHHH---HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 041458 371 HRRCKPNEGTYNG---LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVIT 420 (568)
Q Consensus 371 ~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 420 (568)
+.|..-+...-.- ........++.+|-.+|-............+|..++.
T Consensus 172 E~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~ 224 (393)
T KOG0687|consen 172 EEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVR 224 (393)
T ss_pred HhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHH
No 464
>PHA02798 ankyrin-like protein; Provisional
Probab=33.02 E-value=5.3e+02 Score=26.12 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=50.5
Q ss_pred HHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHH--HHHHHHHHHhcCChHHHHHHHH
Q 041458 118 IKVMEMMVSSGIIPDA---SSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVT--YNSLVRGLCMLGNLNQSLQFLD 192 (568)
Q Consensus 118 ~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~ 192 (568)
.++.+.+.+.|..++. .-.+.|..+......+....++.+.+.+.|..+|... -.+.+...+..+.. .-.++.+
T Consensus 51 ~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~-~~~~iv~ 129 (489)
T PHA02798 51 TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYI-NNLEILL 129 (489)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCc-ChHHHHH
Confidence 3556666677765543 1222222221111122233566777777776554321 11222233333321 2345555
Q ss_pred HHHHCCCCCCHhh--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 041458 193 RLIQKGLVPNAFT--YSFLLEAAYKERGVHAAMKLLDDIIAKGGKPN 237 (568)
Q Consensus 193 ~m~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 237 (568)
.+.+.|..++... -.+.+..+.+.+.. .-.++.+.+++.|..++
T Consensus 130 ~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~-~~~~vv~~Ll~~gadin 175 (489)
T PHA02798 130 FMIENGADTTLLDKDGFTMLQVYLQSNHH-IDIEIIKLLLEKGVDIN 175 (489)
T ss_pred HHHHcCCCccccCCCCCcHHHHHHHcCCc-chHHHHHHHHHhCCCcc
Confidence 6666665554321 12233344444430 11233444455555443
No 465
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=33.01 E-value=95 Score=17.46 Aligned_cols=22 Identities=9% Similarity=0.265 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHH
Q 041458 498 TDLSLEVFQMMIEKGQMPNETTYT 521 (568)
Q Consensus 498 ~~~a~~~~~~m~~~g~~p~~~~~~ 521 (568)
++.|..+|++.+. +.|+..+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 4555666666655 245555554
No 466
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.82 E-value=5.5e+02 Score=26.22 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=49.9
Q ss_pred hHHHHHHHH-HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C------------CChhhHHHHHHHHHc
Q 041458 429 YQAFQLLYE-MTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDY-K------------PDVDNFNALLLGLCK 494 (568)
Q Consensus 429 ~~A~~~~~~-~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~------------p~~~~~~~li~~~~~ 494 (568)
++..+.+.. +.+.|+..+......++.. ..|++..|..++++....|- . ++......+++++ .
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al-~ 257 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEAL-A 257 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-H
Confidence 333444443 3456776666666555544 36899999999987765431 1 1122223334433 3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH
Q 041458 495 SRRTDLSLEVFQMMIEKGQMPNE 517 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~~~g~~p~~ 517 (568)
.|+.+.+.++++++.+.|..|..
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 258 AKAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHH
Confidence 36777777788887777766543
No 467
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.66 E-value=75 Score=21.44 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=19.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 446 DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 446 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
....++.++..+++..-+++++.++.++.+.|.- +...|..-++.+
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~L 52 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSL 52 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 3334444444444444444444444444444332 334444333333
No 468
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=31.89 E-value=2.3e+02 Score=21.53 Aligned_cols=16 Identities=31% Similarity=0.204 Sum_probs=6.8
Q ss_pred hcCChHHHHHHHHHHH
Q 041458 180 MLGNLNQSLQFLDRLI 195 (568)
Q Consensus 180 ~~g~~~~a~~~~~~m~ 195 (568)
+.|-.+++...+.++.
T Consensus 81 klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 81 KLGLASALESRLTRLA 96 (116)
T ss_dssp HCT-HHHHHHHHHHHC
T ss_pred hhccHHHHHHHHHHHH
Confidence 3444444444444443
No 469
>PRK09857 putative transposase; Provisional
Probab=31.87 E-value=4.2e+02 Score=24.59 Aligned_cols=66 Identities=9% Similarity=0.064 Sum_probs=44.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 485 FNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 485 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
+..++.-....++.++..++++...+. .++......++..-+...|.-+++.++.++|...|....
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344554445667766667777666654 333444555667777777777888899999998887644
No 470
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=31.78 E-value=1.8e+02 Score=22.13 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=14.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCC
Q 041458 487 ALLLGLCKSRRTDLSLEVFQMMIEKG 512 (568)
Q Consensus 487 ~li~~~~~~g~~~~a~~~~~~m~~~g 512 (568)
++++-+.++...++|+++++-|.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 34455555555555555555555554
No 471
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.77 E-value=4.8e+02 Score=24.93 Aligned_cols=249 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----hhH
Q 041458 131 PDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNA----FTY 206 (568)
Q Consensus 131 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~ 206 (568)
|++.+.-.++.-|....+.+....+-..... ..+.+-.++.+.+......++..+.... ..|.. ...
T Consensus 73 ~~~~~li~~~~~FV~~~n~eqlr~as~~f~~--------lc~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H 143 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNGEQLRLASEIFFP--------LCHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIH 143 (422)
T ss_pred CCHHHHHHHHHHHHHhcChHHHhhHHHHHHH--------HHHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhhH
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHhhHHHHHHHH--HhcCChHHHHHHHHHhhhCCCCCChhHHHH
Q 041458 207 SFLLEAAYKERGVHAAMKLLDDIIAKG------GKPNLVSYNVLLTGL--CKEGRTEEAIRFFRDLPSKGFEPNVVSYNI 278 (568)
Q Consensus 207 ~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 278 (568)
..++..+.+.+++..+...++.-...- .+|.......+-.+| ...++++.|+.+|....-. |....-..
T Consensus 144 ~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~---Pa~~vs~~ 220 (422)
T KOG2582|consen 144 ADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT---PAMAVSHI 220 (422)
T ss_pred HHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc---chhHHHHH
Q ss_pred HHHHHHc--------CCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 041458 279 LLRSLCM--------EGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPII 350 (568)
Q Consensus 279 l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 350 (568)
.+.+|-+ .|+.-..-+.-......-++|-...|..+.++|.+....+ .+.+..+-.+.
T Consensus 221 hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~e-Lr~lVk~~~~r------------- 286 (422)
T KOG2582|consen 221 HLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTE-LRTLVKKHSER------------- 286 (422)
T ss_pred HHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHH-HHHHHHHHHHH-------------
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-----HHHHHhCCCHHHHHHHHHHHhhCC
Q 041458 351 ARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-----LAMLCGVGKVQEAFAIIQSLGNKQ 407 (568)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~ 407 (568)
+.+-++..-+......+.++.+..-..+|.. +....+.+..+++.+..-+|.+.+
T Consensus 287 --F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 --FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred --HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
No 472
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.93 E-value=4.9e+02 Score=24.73 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041458 464 EEALEIFVVMEEYDYKPD----VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIA 528 (568)
Q Consensus 464 ~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 528 (568)
++...++..+.+. .|+ ..-|-+++......|.++.++.+|++++..|-.|=...-..+++.+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4556666655543 233 34577888888888888888888888888888887666666666654
No 473
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=29.83 E-value=4.1e+02 Score=23.74 Aligned_cols=162 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHh--CCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh--
Q 041458 349 IIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCG--VGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCR-- 424 (568)
Q Consensus 349 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 424 (568)
++...-+.++++++...+.++...+...+..-.+.+....+ .|....++.++..+..............++..|.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-----------------HHHHHHHHHHHH---hCCCCCChhh
Q 041458 425 KGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGL-----------------IEEALEIFVVME---EYDYKPDVDN 484 (568)
Q Consensus 425 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~m~---~~~~~p~~~~ 484 (568)
......-..-+-.+++..+.|...+-.+.+..+--.|+ .++|.+.|+... +..++|...+
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred HHHHHHHHH-----ccCChHHHHHHHHHHHH
Q 041458 485 FNALLLGLC-----KSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 485 ~~~li~~~~-----~~g~~~~a~~~~~~m~~ 510 (568)
+-.++--|. ..|+.++|.++.++..+
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 474
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.67 E-value=4.1e+02 Score=23.76 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=41.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHH-HHHHHHHHHhcCChHHH
Q 041458 110 KANKMKKAIKVMEMMVSSGIIPDA-SSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVT-YNSLVRGLCMLGNLNQS 187 (568)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a 187 (568)
...+++.|+..|.+.+..+ |+. ..|+.-+-++.+..+++.+.+--.+..+. .||.+- .--+-.+......+++|
T Consensus 22 ~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred chhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHH
Confidence 3345566666555555543 333 33445555666666666555554444442 344332 22233444455566666
Q ss_pred HHHHHHH
Q 041458 188 LQFLDRL 194 (568)
Q Consensus 188 ~~~~~~m 194 (568)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 6666655
No 475
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.94 E-value=2.6e+02 Score=21.23 Aligned_cols=26 Identities=35% Similarity=0.462 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh
Q 041458 136 YTYLVNCLCKKGNVGYAMQLVEKMED 161 (568)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~~~~~~~~ 161 (568)
|..|+..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55555555555555555555555544
No 476
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.82 E-value=1e+02 Score=20.83 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=32.4
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041458 479 KPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH 529 (568)
Q Consensus 479 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 529 (568)
.|....++.++..+++..-.++++..+.++.+.|. .+..+|.--++.+.+
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 35566777777777777777888888888887764 455555554444443
No 477
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.34 E-value=6.7e+02 Score=25.78 Aligned_cols=91 Identities=16% Similarity=0.038 Sum_probs=53.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH-hcCChhHHHHHHHHHHHC---CCCCChhhHHHHHHHHHh
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLC-RKGKTYQAFQLLYEMTKY---GFTPDSYTYSSLIRGLCM 459 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~ 459 (568)
+..+.+.|.+..|.+.-+-+.+..+..|+.....+|+.|+ +..+++--+++++..... ..-||-.--.+|...|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4556667778888887777777766667766777777665 556666667776665432 234443333445555554
Q ss_pred cCC---HHHHHHHHHHHH
Q 041458 460 EGL---IEEALEIFVVME 474 (568)
Q Consensus 460 ~g~---~~~a~~~~~~m~ 474 (568)
... -+.|...+.++.
T Consensus 429 ~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQAL 446 (665)
T ss_pred cCChhhHHHHHHHHHHHH
Confidence 433 344554444443
No 478
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.27 E-value=1.6e+02 Score=22.26 Aligned_cols=61 Identities=10% Similarity=0.127 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC--ChHHHHHHHHHHHHCCC
Q 041458 451 SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSR--RTDLSLEVFQMMIEKGQ 513 (568)
Q Consensus 451 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~ 513 (568)
..++.-|...|+.++|...+.++.... -.......++..+...+ .-+....++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 456667777889999988887753211 12223333444444432 23445566666666544
No 479
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=27.79 E-value=5e+02 Score=24.15 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=15.9
Q ss_pred HhhHHHHHHHHHhcCChHHHH
Q 041458 308 IVTYNILIGSLAYHGKTDHAL 328 (568)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~a~ 328 (568)
..+|..|+.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 446888888888888877654
No 480
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=27.67 E-value=6.3e+02 Score=25.29 Aligned_cols=85 Identities=14% Similarity=0.196 Sum_probs=50.2
Q ss_pred hhHHHHHHHHH-HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C--CCC----------ChhhHHHHHHHHH
Q 041458 428 TYQAFQLLYEM-TKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEY-D--YKP----------DVDNFNALLLGLC 493 (568)
Q Consensus 428 ~~~A~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~--~~p----------~~~~~~~li~~~~ 493 (568)
.++..+.+... .+.|+..+......++... .|++..|...++..... + +.. .....-.++++ .
T Consensus 182 ~~el~~~L~~~~~~eg~~i~~~al~~L~~~s--~gdlr~a~~~Lekl~~~~~~~It~~~V~~l~~~~~~~~vf~L~~a-i 258 (451)
T PRK06305 182 EETIIDKLALIAKQEGIETSREALLPIARAA--QGSLRDAESLYDYVVGLFPKSLDPDSVAKALGLLSQDSLYTLDEA-I 258 (451)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHHCCCCHHHHHHHHHH-H
Confidence 34444455543 3457666666655555433 58999999999876532 1 111 11122234443 3
Q ss_pred ccCChHHHHHHHHHHHHCCCCC
Q 041458 494 KSRRTDLSLEVFQMMIEKGQMP 515 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~g~~p 515 (568)
..++.++|..+++++...|..|
T Consensus 259 ~~~d~~~al~~l~~L~~~g~~~ 280 (451)
T PRK06305 259 TTQNYAQALEPVTDAMNSGVAP 280 (451)
T ss_pred HcCCHHHHHHHHHHHHHcCcCH
Confidence 5578888888888888877554
No 481
>PF13934 ELYS: Nuclear pore complex assembly
Probab=27.56 E-value=4.3e+02 Score=23.36 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=25.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041458 417 YVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME 474 (568)
Q Consensus 417 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 474 (568)
.++.++...|+...|+.+++...-. ..+......++.. ..++.+.+|..+-+...
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLVTEAFSFQRSYP 167 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCHHHHHHHHHhCc
Confidence 3555555566666666666543211 0011112222222 44466666665554443
No 482
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=26.75 E-value=3.9e+02 Score=22.51 Aligned_cols=73 Identities=10% Similarity=0.120 Sum_probs=30.3
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 041458 432 FQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMM 508 (568)
Q Consensus 432 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 508 (568)
..++..+.+.|...|...-...+..-.+.| ..-..+.+.+.+.|+. ..+-...+..+......+.|.+++..-
T Consensus 55 e~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi~--~~~Ie~aL~~~~~~~~~~~a~~~~~kk 127 (174)
T COG2137 55 EEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGID--DEIIEEALELIDEEDEQERARKVLRKK 127 (174)
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCCC--HHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 344444444444444333333333333333 2233444455555533 333333344344444444444444443
No 483
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.57 E-value=6.9e+02 Score=25.35 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=51.0
Q ss_pred hhHHHHHHHH-HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChh------------hHHHHHHHHH
Q 041458 428 TYQAFQLLYE-MTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK-PDVD------------NFNALLLGLC 493 (568)
Q Consensus 428 ~~~A~~~~~~-~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~------------~~~~li~~~~ 493 (568)
.++....+.. +...|+..+......++.. ..|++..|...++.+...+-. .+.. ....++++.
T Consensus 180 ~~el~~~L~~i~k~egi~id~~al~~La~~--s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~lg~~~~~~vf~Li~ai- 256 (486)
T PRK14953 180 KEQIKEYLKRICNEEKIEYEEKALDLLAQA--SEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQESVRKFLNLL- 256 (486)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 3444445544 3345776666666555543 458899999999887644311 1111 122333333
Q ss_pred ccCChHHHHHHHHHHHHCCCCCC
Q 041458 494 KSRRTDLSLEVFQMMIEKGQMPN 516 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~g~~p~ 516 (568)
..|+.+.|..+++++...|..|.
T Consensus 257 ~~~d~~~al~~l~~L~~~g~~~~ 279 (486)
T PRK14953 257 LESDVDEAIKFLRTLEEKGYNLN 279 (486)
T ss_pred HCCCHHHHHHHHHHHHHcCCCHH
Confidence 45788888888888887776554
No 484
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=26.57 E-value=5.3e+02 Score=24.06 Aligned_cols=81 Identities=15% Similarity=0.049 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhhhCCC----CCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHH
Q 041458 254 TEEAIRFFRDLPSKGF----EPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALK 329 (568)
Q Consensus 254 ~~~A~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 329 (568)
.++|.+.|+.....+. ..+......++....+.|..+.-..+++..... .+......++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4556666666554311 234444445555555666655544444444432 245555666666666666666666
Q ss_pred HHHHHHHC
Q 041458 330 VLDEMVKG 337 (568)
Q Consensus 330 ~~~~~~~~ 337 (568)
+++.+...
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 66666654
No 485
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=25.90 E-value=4.8e+02 Score=23.35 Aligned_cols=82 Identities=16% Similarity=0.058 Sum_probs=41.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCccc-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH--HHHHHhCCCHH
Q 041458 318 LAYHGKTDHALKVLDEMVKGRFRPSAAS-YNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG--LAMLCGVGKVQ 394 (568)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 394 (568)
|.....++.|...|.+.+.. .|+..+ |..=+..+.+..+++.+..--.+.++. .|+.+--.. .........++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 44445566666666555543 344433 334455566666666665555554443 333332222 33444445555
Q ss_pred HHHHHHHHH
Q 041458 395 EAFAIIQSL 403 (568)
Q Consensus 395 ~a~~~~~~~ 403 (568)
+|+..+.+.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 565555544
No 486
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.69 E-value=8.3e+02 Score=26.00 Aligned_cols=85 Identities=12% Similarity=0.076 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------CCChhhHHHHHHHHH
Q 041458 428 TYQAFQLLYEMT-KYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDY-------------KPDVDNFNALLLGLC 493 (568)
Q Consensus 428 ~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-------------~p~~~~~~~li~~~~ 493 (568)
.++..+.+.... +.|+..+......++.. ..|++..|..+++++...|- ..+......++++..
T Consensus 179 ~eEI~k~L~~Il~kEgI~id~eAL~~IA~~--S~GdLRdALnLLDQaIayg~g~IT~edV~~lLG~~d~e~IfdLldAI~ 256 (702)
T PRK14960 179 VDEITKHLGAILEKEQIAADQDAIWQIAES--AQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLIDRTIIYDLILAVH 256 (702)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhccCCHHHHHHHHHHHH
Confidence 344455555443 45666666665555543 46899999998877664431 112222333444433
Q ss_pred ccCChHHHHHHHHHHHHCCCCC
Q 041458 494 KSRRTDLSLEVFQMMIEKGQMP 515 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~g~~p 515 (568)
+ ++.+.+.++++++.+.|..+
T Consensus 257 k-~d~~~al~~L~el~~~g~d~ 277 (702)
T PRK14960 257 Q-NQREKVSQLLLQFRYQALDV 277 (702)
T ss_pred h-cCHHHHHHHHHHHHHhCCCH
Confidence 3 55666666666666655443
No 487
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=25.62 E-value=1.8e+02 Score=19.66 Aligned_cols=41 Identities=10% Similarity=0.056 Sum_probs=18.0
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQD 531 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 531 (568)
.+...+.+-.+.++.+.+...|...+..+....+++.-+.|
T Consensus 6 ~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 6 ILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 33344444444444444444444444444444444444444
No 488
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.62 E-value=2.9e+02 Score=20.61 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=16.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH
Q 041458 487 ALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTY 520 (568)
Q Consensus 487 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 520 (568)
.|.-.|.+.|+.+.|.+-|+.=.. .-|...+|
T Consensus 77 hLGlLys~~G~~e~a~~eFetEKa--lFPES~~f 108 (121)
T COG4259 77 HLGLLYSNSGKDEQAVREFETEKA--LFPESGVF 108 (121)
T ss_pred HHHHHHhhcCChHHHHHHHHHhhh--hCccchhH
Confidence 344445566666666665554333 34444444
No 489
>PRK09462 fur ferric uptake regulator; Provisional
Probab=25.32 E-value=2.9e+02 Score=22.35 Aligned_cols=35 Identities=9% Similarity=0.083 Sum_probs=16.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 041458 323 KTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEG 357 (568)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 357 (568)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555555444444444444444444443
No 490
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.28 E-value=6.7e+02 Score=24.73 Aligned_cols=23 Identities=22% Similarity=0.007 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCChh
Q 041458 461 GLIEEALEIFVVMEEYDYKPDVD 483 (568)
Q Consensus 461 g~~~~a~~~~~~m~~~~~~p~~~ 483 (568)
++.+.|+.++..|.+.|..|...
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 45555555555555555444433
No 491
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=25.19 E-value=3.4e+02 Score=21.29 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041458 430 QAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALEIFVV 472 (568)
Q Consensus 430 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 472 (568)
.+.++|..|...|+--. +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 45555555555443322 33444555555555555555555543
No 492
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.13 E-value=2.5e+02 Score=19.84 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=19.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCC
Q 041458 487 ALLLGLCKSRRTDLSLEVFQMMIEKG 512 (568)
Q Consensus 487 ~li~~~~~~g~~~~a~~~~~~m~~~g 512 (568)
++++.+.++.--++|+++++-|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 45666677777777888887777776
No 493
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.13 E-value=3e+02 Score=20.72 Aligned_cols=23 Identities=9% Similarity=0.351 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 041458 102 TNLLYDLCKANKMKKAIKVMEMM 124 (568)
Q Consensus 102 ~~l~~~~~~~~~~~~A~~~~~~~ 124 (568)
..++..|...|+.++|...+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34566677777777777777665
No 494
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=25.11 E-value=7.5e+02 Score=25.27 Aligned_cols=23 Identities=30% Similarity=0.212 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Q 041458 277 NILLRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 277 ~~l~~~~~~~g~~~~a~~~~~~~ 299 (568)
..++.-|.+.+++++|..++..|
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Confidence 34556677777777777777666
No 495
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=24.42 E-value=4.2e+02 Score=22.11 Aligned_cols=62 Identities=8% Similarity=0.002 Sum_probs=44.1
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHH
Q 041458 438 MTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDL 500 (568)
Q Consensus 438 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 500 (568)
+.+.|++++..- ..++..+...+..-.|.++++.+.+.+..++..|-..-++.+...|-+.+
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 455677765543 35555555566677899999999988877777776677788888886643
No 496
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.82 E-value=5.6e+02 Score=23.31 Aligned_cols=175 Identities=7% Similarity=0.071 Sum_probs=113.0
Q ss_pred CCCCCcHHHHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHHcCCHHHHHHHHHHHHHc---CC
Q 041458 162 YGYPTNTVTYNSLVRGL-CMLGNLNQSLQFLDRLIQKGLVPNAFT---YSFLLEAAYKERGVHAAMKLLDDIIAK---GG 234 (568)
Q Consensus 162 ~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~---~~ 234 (568)
.+-+||+..=|..-..- .+...+++|+.-|++..+.....-..- ..-++..+.+.+++++....+.+++.. .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34566766544433221 234578999999999988633333333 345678889999999999999988642 11
Q ss_pred --CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCChhH----HHHHHHHHHcCCCHHHHHHHHHHhccCC----
Q 041458 235 --KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK-GFEPNVVS----YNILLRSLCMEGRWEEANELLAEMDGGD---- 303 (568)
Q Consensus 235 --~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~---- 303 (568)
.-+..+.|.+++......+.+....+|+.-.+. .-..+... -+.|...|...+++....+++.++..+-
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 224556788887777777777777777654321 00112222 2457777888899999999888875421
Q ss_pred CCcC-------HhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 304 RSPT-------IVTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 304 ~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
-..| ...|..=|.+|....+-.+...++++.+.
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 0112 34566667788888888888888887654
No 497
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.78 E-value=6.6e+02 Score=24.19 Aligned_cols=86 Identities=13% Similarity=0.116 Sum_probs=43.0
Q ss_pred ChhHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-------------CChhhHHHHHHHH
Q 041458 427 KTYQAFQLLYEMT-KYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK-------------PDVDNFNALLLGL 492 (568)
Q Consensus 427 ~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-------------p~~~~~~~li~~~ 492 (568)
..++..+.+.... +.|+..+......++.. ..|++..|...++.....+-. ++......++++.
T Consensus 179 ~~~el~~~L~~~~~~~g~~i~~~al~~ia~~--s~G~~R~al~~l~~~~~~~~~~It~~~v~~~l~~~~~~~i~~l~~ai 256 (363)
T PRK14961 179 SEEKIFNFLKYILIKESIDTDEYALKLIAYH--AHGSMRDALNLLEHAINLGKGNINIKNVTDMLGLLNEKQSFLLTDAL 256 (363)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3445555555433 44655555554444432 358888888888776433210 0111122222332
Q ss_pred HccCChHHHHHHHHHHHHCCCCC
Q 041458 493 CKSRRTDLSLEVFQMMIEKGQMP 515 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~g~~p 515 (568)
..++.+++.++++++.+.|..|
T Consensus 257 -~~~~~~~~~~~~~~l~~~g~~~ 278 (363)
T PRK14961 257 -LKKDSKKTMLLLNKISSIGIEW 278 (363)
T ss_pred -HcCCHHHHHHHHHHHHHcCCCH
Confidence 2356666666666666555443
No 498
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.77 E-value=6.9e+02 Score=24.40 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 135 SYTYLVNCLCKKGNVGYAMQLVEKMEDYG--YPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQ 196 (568)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 196 (568)
.+.-+...|..+|+++.|++.+.+.++.- .......|-.+|..-...|+|........+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45556667777777777777777754431 111234455566666666777666666665544
No 499
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.74 E-value=5.4e+02 Score=23.14 Aligned_cols=68 Identities=16% Similarity=0.001 Sum_probs=35.0
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHH
Q 041458 490 LGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLV 558 (568)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 558 (568)
.++...|++-++++.-.+.+.. .+.+...|..=..+-...=+.++|..-+.++++.++.-.+++.+=+
T Consensus 238 QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrEl 305 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSREL 305 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence 3444455555555555555553 2334455544444444444555666666666666655444444433
No 500
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=23.55 E-value=2e+02 Score=20.84 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcCCCC
Q 041458 516 NETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFEGIEV 568 (568)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 568 (568)
.......+-.-|-+.|..+.+.+.+.+........ .++..|+.++...++..
T Consensus 31 ~d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~-Atv~~Lv~AL~~c~l~~ 82 (90)
T cd08780 31 RDPAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKK-ATLQRLVQALEENGLTS 82 (90)
T ss_pred chhHHHHHHhhcccccHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHccchH
Done!