Query 041458
Match_columns 568
No_of_seqs 797 out of 3017
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 12:10:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.9E-41 1.3E-45 347.9 44.1 472 75-563 65-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.8E-39 2E-43 331.6 40.5 444 71-527 92-594 (597)
3 4g26_A Pentatricopeptide repea 100.0 6.6E-31 2.2E-35 259.5 24.4 204 82-285 9-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 5.5E-31 1.9E-35 260.1 23.7 206 116-321 8-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 5.2E-28 1.8E-32 235.4 44.4 383 139-565 5-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 3.2E-27 1.1E-31 229.8 46.3 382 104-531 5-387 (388)
7 2gw1_A Mitochondrial precursor 100.0 8E-25 2.7E-29 221.4 38.8 450 99-557 7-489 (514)
8 2gw1_A Mitochondrial precursor 99.9 7.2E-24 2.5E-28 214.4 36.7 435 72-517 15-482 (514)
9 3fp2_A TPR repeat-containing p 99.9 1.6E-22 5.4E-27 205.7 39.9 443 98-555 25-500 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1.9E-22 6.5E-27 200.3 37.8 315 132-475 25-357 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 3.4E-22 1.2E-26 198.4 38.5 368 165-566 23-440 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.5E-22 5.1E-27 205.9 36.5 467 71-566 33-536 (537)
13 2xm6_A Protein corresponding t 99.9 8.6E-18 2.9E-22 168.2 50.1 397 83-548 27-469 (490)
14 3ieg_A DNAJ homolog subfamily 99.9 3.6E-19 1.2E-23 170.7 37.6 331 202-562 2-351 (359)
15 2xm6_A Protein corresponding t 99.9 2.6E-17 8.9E-22 164.7 50.0 369 118-549 27-435 (490)
16 2ooe_A Cleavage stimulation fa 99.9 3.1E-18 1.1E-22 173.3 43.1 434 86-549 2-495 (530)
17 3ieg_A DNAJ homolog subfamily 99.9 1.1E-18 3.8E-23 167.3 36.6 331 167-528 2-351 (359)
18 2ooe_A Cleavage stimulation fa 99.9 1.8E-17 6.2E-22 167.6 43.8 410 74-511 23-492 (530)
19 3hym_B Cell division cycle pro 99.9 1.7E-18 5.7E-23 164.0 32.0 281 241-527 25-314 (330)
20 3hym_B Cell division cycle pro 99.9 1.5E-18 5.1E-23 164.4 31.5 291 270-565 19-319 (330)
21 1fch_A Peroxisomal targeting s 99.8 2.1E-18 7E-23 166.2 25.9 289 251-544 38-357 (368)
22 1fch_A Peroxisomal targeting s 99.8 3.9E-18 1.3E-22 164.2 23.9 291 73-368 35-355 (368)
23 1b89_A Protein (clathrin heavy 99.8 3.7E-17 1.2E-21 153.8 28.4 239 75-355 15-253 (449)
24 4eqf_A PEX5-related protein; a 99.8 1.7E-18 5.9E-23 166.6 19.9 265 274-542 66-352 (365)
25 1xi4_A Clathrin heavy chain; a 99.8 5.7E-15 2E-19 154.9 46.1 409 98-565 985-1415(1630)
26 4eqf_A PEX5-related protein; a 99.8 2.6E-17 9E-22 158.2 23.6 268 97-368 64-352 (365)
27 1xi4_A Clathrin heavy chain; a 99.8 3.1E-14 1.1E-18 149.4 47.1 372 71-502 993-1375(1630)
28 1b89_A Protein (clathrin heavy 99.8 2.9E-16 9.9E-21 147.7 28.7 284 110-435 15-305 (449)
29 3cv0_A Peroxisome targeting si 99.8 6.1E-17 2.1E-21 153.0 22.7 265 99-369 22-312 (327)
30 3cv0_A Peroxisome targeting si 99.8 8.9E-17 3E-21 151.9 23.5 279 239-545 22-314 (327)
31 3mkr_A Coatomer subunit epsilo 99.8 4.6E-16 1.6E-20 143.4 27.6 261 247-555 8-273 (291)
32 4g1t_A Interferon-induced prot 99.8 1.8E-15 6.1E-20 150.9 33.5 391 132-554 50-467 (472)
33 3spa_A Mtrpol, DNA-directed RN 99.8 3.3E-18 1.1E-22 173.5 13.4 161 133-298 127-306 (1134)
34 4g1t_A Interferon-induced prot 99.8 3.2E-15 1.1E-19 149.0 34.4 411 78-520 30-469 (472)
35 3mkr_A Coatomer subunit epsilo 99.8 3.4E-16 1.2E-20 144.3 24.7 250 74-337 10-264 (291)
36 3spa_A Mtrpol, DNA-directed RN 99.7 2.5E-18 8.6E-23 174.4 9.5 120 411-530 126-249 (1134)
37 3e4b_A ALGK; tetratricopeptide 99.7 5.9E-15 2E-19 145.3 25.7 342 104-512 9-388 (452)
38 4e6h_A MRNA 3'-END-processing 99.7 1.8E-12 6.1E-17 131.8 41.7 461 78-566 47-589 (679)
39 3uq3_A Heat shock protein STI1 99.7 1.3E-14 4.6E-19 131.6 23.4 239 273-559 5-255 (258)
40 3uq3_A Heat shock protein STI1 99.6 4.9E-14 1.7E-18 127.9 23.8 225 98-336 5-235 (258)
41 3e4b_A ALGK; tetratricopeptide 99.6 3E-14 1E-18 140.2 23.8 375 72-510 12-420 (452)
42 3u4t_A TPR repeat-containing p 99.6 9.4E-14 3.2E-18 127.2 25.4 245 314-562 9-266 (272)
43 2pl2_A Hypothetical conserved 99.6 3.8E-14 1.3E-18 124.7 21.3 198 96-299 3-211 (217)
44 2pl2_A Hypothetical conserved 99.6 5.8E-14 2E-18 123.5 20.7 197 131-333 3-210 (217)
45 1ouv_A Conserved hypothetical 99.6 1.6E-12 5.5E-17 119.0 31.1 224 97-338 5-252 (273)
46 4e6h_A MRNA 3'-END-processing 99.6 8.3E-12 2.8E-16 126.9 38.8 426 74-527 77-584 (679)
47 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.7E-14 2E-18 128.9 20.6 249 73-331 15-269 (275)
48 2h6f_A Protein farnesyltransfe 99.6 1.1E-13 3.7E-18 131.9 22.6 248 274-562 98-364 (382)
49 1ouv_A Conserved hypothetical 99.6 2E-12 6.7E-17 118.5 30.3 224 132-373 5-252 (273)
50 2ho1_A Type 4 fimbrial biogene 99.6 4.3E-13 1.5E-17 121.3 25.4 210 308-555 37-247 (252)
51 1xnf_A Lipoprotein NLPI; TPR, 99.6 9.6E-14 3.3E-18 127.4 21.2 247 110-366 17-269 (275)
52 2q7f_A YRRB protein; TPR, prot 99.6 1.4E-13 4.8E-18 123.7 20.6 216 308-562 23-238 (243)
53 3u4t_A TPR repeat-containing p 99.6 6.9E-13 2.4E-17 121.4 25.1 247 240-525 5-263 (272)
54 2vq2_A PILW, putative fimbrial 99.6 1E-12 3.6E-17 116.3 25.3 211 307-555 7-220 (225)
55 2h6f_A Protein farnesyltransfe 99.6 7.7E-13 2.6E-17 126.0 25.3 249 97-353 96-363 (382)
56 2ho1_A Type 4 fimbrial biogene 99.6 1.4E-12 4.8E-17 117.8 26.0 201 98-302 37-238 (252)
57 2vq2_A PILW, putative fimbrial 99.6 2.1E-12 7.2E-17 114.3 25.7 202 97-301 7-210 (225)
58 2q7f_A YRRB protein; TPR, prot 99.6 3.2E-13 1.1E-17 121.3 19.5 197 100-301 25-221 (243)
59 2ond_A Cleavage stimulation fa 99.5 1.9E-11 6.6E-16 113.9 27.1 187 360-549 81-273 (308)
60 3sf4_A G-protein-signaling mod 99.5 4.7E-13 1.6E-17 130.3 16.8 281 236-546 7-336 (406)
61 4a1s_A PINS, partner of inscut 99.5 9.1E-13 3.1E-17 128.7 18.1 272 100-372 50-372 (411)
62 3sf4_A G-protein-signaling mod 99.5 1.6E-12 5.5E-17 126.6 18.7 276 95-371 6-335 (406)
63 2ond_A Cleavage stimulation fa 99.5 8.5E-11 2.9E-15 109.5 29.0 218 115-337 33-270 (308)
64 4a1s_A PINS, partner of inscut 99.4 1.6E-12 5.6E-17 126.8 17.0 98 168-266 48-154 (411)
65 3ro2_A PINS homolog, G-protein 99.4 2.6E-12 8.9E-17 121.4 17.5 272 100-372 7-332 (338)
66 3ro2_A PINS homolog, G-protein 99.4 2.4E-12 8.2E-17 121.6 16.5 280 239-548 6-334 (338)
67 3ulq_A Response regulator aspa 99.4 1.4E-11 4.9E-16 118.8 21.8 236 279-546 109-368 (383)
68 4abn_A Tetratricopeptide repea 99.4 1.1E-11 3.8E-16 122.7 20.1 214 114-333 84-317 (474)
69 3vtx_A MAMA; tetratricopeptide 99.4 5.7E-11 1.9E-15 101.4 22.0 167 97-267 4-170 (184)
70 3ulq_A Response regulator aspa 99.4 1.5E-11 5.1E-16 118.7 20.1 296 73-371 22-367 (383)
71 3nf1_A KLC 1, kinesin light ch 99.4 2.7E-12 9.2E-17 119.9 13.8 239 97-336 26-306 (311)
72 3vtx_A MAMA; tetratricopeptide 99.4 8.4E-11 2.9E-15 100.3 21.8 164 133-300 5-168 (184)
73 4abn_A Tetratricopeptide repea 99.4 1.4E-11 4.9E-16 121.9 18.6 215 149-370 84-319 (474)
74 3nf1_A KLC 1, kinesin light ch 99.3 2.7E-11 9.1E-16 113.1 15.7 239 132-371 26-306 (311)
75 1hz4_A MALT regulatory protein 99.3 1.7E-09 5.7E-14 103.9 28.7 269 103-371 19-321 (373)
76 1hz4_A MALT regulatory protein 99.3 9.7E-10 3.3E-14 105.5 26.8 264 73-336 24-321 (373)
77 3q15_A PSP28, response regulat 99.3 3.7E-10 1.3E-14 108.6 23.3 234 279-545 107-364 (378)
78 3q15_A PSP28, response regulat 99.3 9.7E-10 3.3E-14 105.7 23.6 159 213-372 111-290 (378)
79 4i17_A Hypothetical protein; T 99.3 8.4E-10 2.9E-14 97.8 21.4 208 342-561 6-224 (228)
80 3as5_A MAMA; tetratricopeptide 99.3 7.7E-10 2.6E-14 94.2 19.8 164 99-266 9-172 (186)
81 3as5_A MAMA; tetratricopeptide 99.2 5.2E-10 1.8E-14 95.2 18.4 163 384-550 15-177 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.2 5.5E-10 1.9E-14 115.0 20.3 163 133-299 9-171 (723)
83 4gyw_A UDP-N-acetylglucosamine 99.2 6.1E-10 2.1E-14 114.7 20.1 167 96-266 7-173 (723)
84 4i17_A Hypothetical protein; T 99.2 2.4E-09 8.3E-14 94.7 21.0 194 132-337 6-209 (228)
85 2uy1_A Cleavage stimulation fa 99.2 2.4E-08 8.1E-13 98.7 28.7 378 110-545 6-412 (493)
86 3edt_B KLC 2, kinesin light ch 99.2 3.1E-10 1E-14 104.1 14.2 226 76-302 14-281 (283)
87 3edt_B KLC 2, kinesin light ch 99.1 4E-10 1.4E-14 103.3 13.7 157 110-266 13-197 (283)
88 1qqe_A Vesicular transport pro 99.1 9.1E-10 3.1E-14 101.5 15.6 141 415-557 120-280 (292)
89 3mv2_B Coatomer subunit epsilo 99.1 2.4E-08 8.2E-13 90.1 23.7 179 152-337 85-282 (310)
90 2fo7_A Synthetic consensus TPR 99.1 5.9E-09 2E-13 83.3 17.4 133 414-549 3-135 (136)
91 3mv2_B Coatomer subunit epsilo 99.1 2.8E-08 9.6E-13 89.6 22.7 181 187-374 85-284 (310)
92 4ga2_A E3 SUMO-protein ligase 99.1 6.7E-10 2.3E-14 90.9 10.7 144 420-567 5-150 (150)
93 3dra_A Protein farnesyltransfe 99.1 8.7E-08 3E-12 87.4 25.0 233 323-559 48-301 (306)
94 1qqe_A Vesicular transport pro 99.1 1.8E-08 6.3E-13 92.7 20.7 159 107-265 46-226 (292)
95 2uy1_A Cleavage stimulation fa 99.0 3E-07 1E-11 90.8 30.2 84 77-162 28-118 (493)
96 3rjv_A Putative SEL1 repeat pr 99.0 5.7E-08 2E-12 84.6 20.1 176 81-268 4-198 (212)
97 3qky_A Outer membrane assembly 99.0 4.1E-08 1.4E-12 88.8 19.9 65 486-552 152-230 (261)
98 3qky_A Outer membrane assembly 99.0 3E-08 1E-12 89.7 18.4 187 96-302 13-224 (261)
99 2fo7_A Synthetic consensus TPR 99.0 4E-08 1.4E-12 78.3 17.1 128 101-231 4-131 (136)
100 3urz_A Uncharacterized protein 99.0 3.9E-08 1.3E-12 85.4 17.4 93 101-196 7-116 (208)
101 3rjv_A Putative SEL1 repeat pr 98.9 5.8E-08 2E-12 84.5 18.4 175 116-302 4-197 (212)
102 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.1E-07 3.6E-12 83.8 19.4 185 344-550 5-217 (225)
103 2vsy_A XCC0866; transferase, g 98.9 3.4E-08 1.2E-12 100.4 18.1 156 391-550 3-161 (568)
104 2pzi_A Probable serine/threoni 98.9 3.6E-08 1.2E-12 102.1 18.3 140 384-529 440-580 (681)
105 2pzi_A Probable serine/threoni 98.9 1.7E-08 5.9E-13 104.5 15.9 173 388-565 402-582 (681)
106 3dra_A Protein farnesyltransfe 98.9 1.2E-06 4.2E-11 79.9 26.1 217 115-336 50-286 (306)
107 2r5s_A Uncharacterized protein 98.9 2E-08 6.7E-13 84.7 13.1 158 384-545 13-172 (176)
108 3urz_A Uncharacterized protein 98.9 1.2E-07 4.1E-12 82.2 18.5 111 136-249 7-133 (208)
109 4gco_A Protein STI-1; structur 98.9 7E-08 2.4E-12 75.9 15.0 116 443-560 8-124 (126)
110 2r5s_A Uncharacterized protein 98.8 6.7E-08 2.3E-12 81.4 14.3 82 427-510 89-172 (176)
111 2yhc_A BAMD, UPF0169 lipoprote 98.8 4.1E-07 1.4E-11 80.0 19.8 204 273-511 4-213 (225)
112 2ifu_A Gamma-SNAP; membrane fu 98.8 1.2E-07 4E-12 88.0 16.8 199 76-300 4-222 (307)
113 3qou_A Protein YBBN; thioredox 98.8 1.2E-07 4.1E-12 86.9 16.4 167 95-265 114-282 (287)
114 4ga2_A E3 SUMO-protein ligase 98.8 5.3E-08 1.8E-12 79.4 12.5 139 390-532 10-149 (150)
115 3qou_A Protein YBBN; thioredox 98.8 1.4E-07 4.7E-12 86.5 16.1 84 424-508 197-281 (287)
116 2vsy_A XCC0866; transferase, g 98.8 2.1E-07 7.1E-12 94.7 18.4 155 76-234 2-159 (568)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.3E-07 1.5E-11 79.0 17.8 87 384-475 13-99 (213)
118 2ifu_A Gamma-SNAP; membrane fu 98.8 1.3E-07 4.6E-12 87.6 15.1 222 286-538 4-253 (307)
119 3q7a_A Farnesyltransferase alp 98.8 2.6E-06 8.8E-11 78.5 23.0 228 324-555 70-341 (349)
120 1na0_A Designed protein CTPR3; 98.8 3.6E-07 1.2E-11 71.4 15.3 116 447-564 9-124 (125)
121 3u3w_A Transcriptional activat 98.7 6.5E-06 2.2E-10 75.6 24.6 162 384-545 82-265 (293)
122 3dss_A Geranylgeranyl transfer 98.7 9.9E-06 3.4E-10 74.3 24.4 197 359-561 90-319 (331)
123 2lni_A Stress-induced-phosphop 98.7 4.1E-07 1.4E-11 72.1 13.6 117 447-565 16-132 (133)
124 3gyz_A Chaperone protein IPGC; 98.7 7.6E-07 2.6E-11 72.2 15.2 103 447-551 36-138 (151)
125 3q7a_A Farnesyltransferase alp 98.7 1.5E-05 5.3E-10 73.4 25.6 219 113-336 69-330 (349)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.6E-06 8.8E-11 74.0 18.4 127 241-373 9-151 (213)
127 3u3w_A Transcriptional activat 98.6 6.1E-06 2.1E-10 75.8 21.6 162 174-335 81-264 (293)
128 2vyi_A SGTA protein; chaperone 98.6 1.4E-06 4.7E-11 68.7 14.8 114 449-564 14-127 (131)
129 2vgx_A Chaperone SYCD; alterna 98.6 2.3E-07 7.8E-12 75.3 10.2 99 449-549 23-121 (148)
130 1a17_A Serine/threonine protei 98.6 1.7E-06 5.8E-11 71.6 15.8 130 413-545 14-145 (166)
131 3gyz_A Chaperone protein IPGC; 98.6 1E-06 3.4E-11 71.5 13.6 103 412-518 36-138 (151)
132 2e2e_A Formate-dependent nitri 98.6 6.9E-07 2.4E-11 75.1 13.2 125 424-551 22-149 (177)
133 4gco_A Protein STI-1; structur 98.6 1.2E-06 4.2E-11 68.7 13.5 108 413-524 14-122 (126)
134 2qfc_A PLCR protein; TPR, HTH, 98.6 6.5E-06 2.2E-10 75.6 20.6 127 418-544 121-264 (293)
135 2c2l_A CHIP, carboxy terminus 98.6 5.6E-07 1.9E-11 82.1 12.9 99 97-197 3-101 (281)
136 3upv_A Heat shock protein STI1 98.6 1.3E-06 4.3E-11 68.7 13.4 109 449-559 6-120 (126)
137 1na0_A Designed protein CTPR3; 98.6 2.3E-06 7.7E-11 66.8 14.8 116 412-530 9-124 (125)
138 1a17_A Serine/threonine protei 98.5 3.5E-06 1.2E-10 69.7 16.0 128 99-229 14-143 (166)
139 1elw_A TPR1-domain of HOP; HOP 98.5 2.9E-06 9.8E-11 65.4 14.5 110 448-559 5-114 (118)
140 3gw4_A Uncharacterized protein 98.5 8.3E-07 2.8E-11 76.5 12.3 158 389-547 4-177 (203)
141 2c2l_A CHIP, carboxy terminus 98.5 5.8E-07 2E-11 82.0 11.5 195 132-336 3-198 (281)
142 4f3v_A ESX-1 secretion system 98.5 6.3E-07 2.2E-11 79.8 11.2 139 415-557 105-247 (282)
143 2e2e_A Formate-dependent nitri 98.5 1.1E-06 3.9E-11 73.8 12.4 124 72-198 19-145 (177)
144 1p5q_A FKBP52, FK506-binding p 98.5 2.1E-06 7.2E-11 80.5 15.2 131 413-545 148-293 (336)
145 2lni_A Stress-induced-phosphop 98.5 2.5E-06 8.4E-11 67.5 13.5 118 411-531 15-132 (133)
146 4f3v_A ESX-1 secretion system 98.5 9E-07 3.1E-11 78.8 11.7 135 384-523 109-247 (282)
147 2vyi_A SGTA protein; chaperone 98.5 3.7E-06 1.3E-10 66.2 14.3 119 412-533 12-130 (131)
148 2qfc_A PLCR protein; TPR, HTH, 98.5 1.7E-05 5.8E-10 72.8 20.7 59 240-298 198-262 (293)
149 3gw4_A Uncharacterized protein 98.5 1.5E-06 5.2E-11 74.8 12.8 154 75-229 4-173 (203)
150 2dba_A Smooth muscle cell asso 98.5 6E-06 2E-10 66.7 15.5 114 446-562 27-144 (148)
151 2xcb_A PCRH, regulatory protei 98.5 2.2E-06 7.4E-11 69.0 12.3 94 415-510 21-114 (142)
152 2vgx_A Chaperone SYCD; alterna 98.4 1.8E-06 6.3E-11 69.9 11.3 99 411-511 20-118 (148)
153 2kck_A TPR repeat; tetratricop 98.4 3E-06 1E-10 64.6 12.1 102 447-550 6-110 (112)
154 3sz7_A HSC70 cochaperone (SGT) 98.4 3.1E-06 1E-10 70.1 12.8 99 411-511 10-108 (164)
155 4gcn_A Protein STI-1; structur 98.4 3.4E-06 1.2E-10 66.2 12.3 97 450-547 11-113 (127)
156 3q49_B STIP1 homology and U bo 98.4 5.3E-06 1.8E-10 66.1 13.3 97 412-510 9-105 (137)
157 3dss_A Geranylgeranyl transfer 98.4 0.0002 7E-09 65.6 24.7 188 75-267 41-267 (331)
158 1p5q_A FKBP52, FK506-binding p 98.4 6.1E-06 2.1E-10 77.3 15.1 124 97-222 146-283 (336)
159 3upv_A Heat shock protein STI1 98.4 7.6E-06 2.6E-10 64.1 13.5 97 413-511 5-101 (126)
160 1hxi_A PEX5, peroxisome target 98.3 4.2E-06 1.4E-10 65.0 10.7 98 450-549 20-117 (121)
161 2xev_A YBGF; tetratricopeptide 98.3 1.9E-05 6.4E-10 62.0 14.8 100 453-554 8-113 (129)
162 4gcn_A Protein STI-1; structur 98.3 9.3E-06 3.2E-10 63.7 12.6 108 413-523 9-122 (127)
163 1elw_A TPR1-domain of HOP; HOP 98.3 2.3E-05 8E-10 60.1 14.7 111 412-525 4-114 (118)
164 1elr_A TPR2A-domain of HOP; HO 98.3 1.1E-05 3.8E-10 63.4 12.9 107 413-522 5-117 (131)
165 2fbn_A 70 kDa peptidylprolyl i 98.3 1.2E-05 4E-10 68.9 13.6 133 414-548 40-188 (198)
166 2xcb_A PCRH, regulatory protei 98.3 7.8E-06 2.7E-10 65.7 11.0 103 448-552 19-121 (142)
167 2dba_A Smooth muscle cell asso 98.3 3.5E-05 1.2E-09 62.1 15.1 112 411-526 27-142 (148)
168 2fbn_A 70 kDa peptidylprolyl i 98.3 2.5E-05 8.6E-10 66.8 14.8 139 422-563 14-168 (198)
169 3sz7_A HSC70 cochaperone (SGT) 98.2 2.5E-05 8.5E-10 64.5 13.8 104 447-552 11-114 (164)
170 2kck_A TPR repeat; tetratricop 98.2 1.5E-05 5E-10 60.6 11.4 93 242-336 10-105 (112)
171 1elr_A TPR2A-domain of HOP; HO 98.2 1.1E-05 3.8E-10 63.3 11.0 113 447-561 4-122 (131)
172 3rkv_A Putative peptidylprolyl 98.2 1.4E-05 4.9E-10 65.8 12.0 68 483-551 64-131 (162)
173 3q49_B STIP1 homology and U bo 98.2 5E-05 1.7E-09 60.2 14.8 103 445-549 7-109 (137)
174 1hxi_A PEX5, peroxisome target 98.2 1.5E-05 5.3E-10 61.8 10.3 96 414-511 19-114 (121)
175 3k9i_A BH0479 protein; putativ 98.1 8.1E-06 2.8E-10 63.0 7.8 85 425-510 3-89 (117)
176 3ro3_A PINS homolog, G-protein 98.1 1.9E-05 6.4E-10 64.7 10.5 134 413-546 10-158 (164)
177 2xev_A YBGF; tetratricopeptide 98.1 0.0001 3.5E-09 57.7 14.3 93 416-511 6-105 (129)
178 4b4t_Q 26S proteasome regulato 98.0 0.00027 9.2E-09 68.8 19.1 197 314-510 10-244 (434)
179 4b4t_Q 26S proteasome regulato 98.0 0.00015 5.2E-09 70.6 17.2 194 106-299 12-242 (434)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 4.6E-05 1.6E-09 74.7 13.1 87 448-537 318-405 (457)
181 1dce_A Protein (RAB geranylger 98.0 0.00039 1.3E-08 69.7 19.8 133 428-563 89-238 (567)
182 3k9i_A BH0479 protein; putativ 98.0 1.4E-05 4.7E-10 61.7 6.9 93 460-553 3-97 (117)
183 2if4_A ATFKBP42; FKBP-like, al 98.0 1.5E-05 5.2E-10 74.6 8.1 132 415-551 182-333 (338)
184 1ihg_A Cyclophilin 40; ppiase 98.0 7.2E-05 2.5E-09 70.8 12.7 125 412-538 223-362 (370)
185 3rkv_A Putative peptidylprolyl 97.9 8E-05 2.7E-09 61.2 11.4 101 414-517 13-130 (162)
186 1wao_1 Serine/threonine protei 97.9 3.4E-05 1.2E-09 76.0 10.5 119 71-192 14-134 (477)
187 3ro3_A PINS homolog, G-protein 97.9 5E-05 1.7E-09 62.1 10.1 97 99-195 10-116 (164)
188 1wao_1 Serine/threonine protei 97.9 2.2E-05 7.4E-10 77.4 9.1 117 422-541 16-134 (477)
189 1ihg_A Cyclophilin 40; ppiase 97.9 8.4E-05 2.9E-09 70.4 12.8 117 384-502 230-361 (370)
190 2hr2_A Hypothetical protein; a 97.9 6.1E-05 2.1E-09 60.3 9.7 66 484-549 59-134 (159)
191 1klx_A Cysteine rich protein B 97.9 0.00038 1.3E-08 55.2 14.6 112 426-548 9-128 (138)
192 1dce_A Protein (RAB geranylger 97.9 0.00027 9.3E-09 70.9 16.7 138 393-534 89-243 (567)
193 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 9.9E-05 3.4E-09 72.3 12.8 81 482-563 317-397 (457)
194 2hr2_A Hypothetical protein; a 97.8 0.00019 6.5E-09 57.5 11.3 95 415-510 14-130 (159)
195 1klx_A Cysteine rich protein B 97.8 0.00057 2E-08 54.2 14.2 112 76-198 8-127 (138)
196 1na3_A Designed protein CTPR2; 97.8 0.00022 7.5E-09 51.5 10.6 82 482-564 9-90 (91)
197 2if4_A ATFKBP42; FKBP-like, al 97.7 7.6E-05 2.6E-09 69.9 8.6 149 203-372 179-328 (338)
198 2l6j_A TPR repeat-containing p 97.7 3.4E-05 1.2E-09 58.5 4.4 62 448-510 5-66 (111)
199 2kat_A Uncharacterized protein 97.6 0.00039 1.3E-08 53.0 10.0 79 430-510 3-81 (115)
200 2l6j_A TPR repeat-containing p 97.6 0.00039 1.3E-08 52.4 9.9 84 481-565 3-92 (111)
201 1zu2_A Mitochondrial import re 97.6 0.00016 5.6E-09 57.7 7.3 86 423-510 13-119 (158)
202 1zu2_A Mitochondrial import re 97.6 0.00012 4.1E-09 58.5 6.5 91 460-552 15-126 (158)
203 3n71_A Histone lysine methyltr 97.6 0.00036 1.2E-08 68.3 10.8 126 422-547 319-465 (490)
204 3n71_A Histone lysine methyltr 97.5 0.00041 1.4E-08 67.9 10.3 86 214-299 320-419 (490)
205 1na3_A Designed protein CTPR2; 97.5 0.0011 3.7E-08 47.7 10.1 80 448-529 10-89 (91)
206 2kat_A Uncharacterized protein 97.5 0.00085 2.9E-08 51.1 9.7 65 481-546 18-82 (115)
207 3ma5_A Tetratricopeptide repea 97.4 0.00069 2.4E-08 50.1 8.1 64 446-510 6-69 (100)
208 3ma5_A Tetratricopeptide repea 97.3 0.0011 3.8E-08 49.0 8.1 63 411-474 6-68 (100)
209 1pc2_A Mitochondria fission pr 96.9 0.012 4.1E-07 46.4 10.9 88 464-553 15-107 (152)
210 2kc7_A BFR218_protein; tetratr 96.9 0.0079 2.7E-07 44.0 9.5 58 453-511 6-64 (99)
211 3ly7_A Transcriptional activat 96.8 0.018 6.2E-07 53.0 13.1 138 410-551 192-344 (372)
212 3mkq_A Coatomer beta'-subunit; 96.8 0.091 3.1E-06 55.6 20.7 152 178-368 609-761 (814)
213 3ly7_A Transcriptional activat 96.7 0.033 1.1E-06 51.3 14.1 74 200-277 274-347 (372)
214 2v5f_A Prolyl 4-hydroxylase su 96.7 0.016 5.6E-07 42.9 10.1 64 447-510 5-74 (104)
215 2kc7_A BFR218_protein; tetratr 96.7 0.0026 8.7E-08 46.7 5.5 57 419-476 7-64 (99)
216 3mkq_A Coatomer beta'-subunit; 96.7 0.17 5.9E-06 53.4 21.8 127 211-370 607-734 (814)
217 3bee_A Putative YFRE protein; 96.7 0.016 5.5E-07 41.8 9.4 68 481-549 5-75 (93)
218 3qww_A SET and MYND domain-con 96.5 0.013 4.4E-07 56.3 10.6 60 484-543 342-408 (433)
219 4h7y_A Dual specificity protei 96.4 0.049 1.7E-06 42.3 11.0 67 495-562 73-139 (161)
220 3qww_A SET and MYND domain-con 96.4 0.018 6.1E-07 55.3 10.6 86 425-510 311-410 (433)
221 3qwp_A SET and MYND domain-con 96.3 0.026 8.9E-07 54.2 11.3 92 419-510 294-399 (429)
222 3qwp_A SET and MYND domain-con 96.1 0.018 6.3E-07 55.3 8.9 91 245-335 294-398 (429)
223 1pc2_A Mitochondria fission pr 96.1 0.043 1.5E-06 43.3 9.4 84 429-516 15-103 (152)
224 3bee_A Putative YFRE protein; 96.1 0.028 9.7E-07 40.4 7.8 64 446-510 5-71 (93)
225 3mkq_B Coatomer subunit alpha; 95.7 0.39 1.3E-05 38.9 13.7 45 214-264 16-60 (177)
226 1nzn_A CGI-135 protein, fissio 95.7 0.086 2.9E-06 39.9 9.2 91 461-553 15-110 (126)
227 4h7y_A Dual specificity protei 95.7 0.17 5.8E-06 39.3 10.8 103 95-199 10-125 (161)
228 1wy6_A Hypothetical protein ST 95.5 0.55 1.9E-05 35.7 13.1 64 449-513 93-156 (172)
229 2v5f_A Prolyl 4-hydroxylase su 95.4 0.14 4.7E-06 37.7 9.6 66 97-162 4-75 (104)
230 3u64_A Protein TP_0956; tetrat 95.1 0.18 6.2E-06 44.5 10.6 107 428-544 179-296 (301)
231 3mkq_B Coatomer subunit alpha; 95.0 1.2 4E-05 36.1 17.1 101 143-264 15-115 (177)
232 1wy6_A Hypothetical protein ST 94.7 1 3.6E-05 34.2 14.8 138 180-339 19-156 (172)
233 3lvg_A Clathrin heavy chain 1; 94.7 1.3E-05 4.6E-10 74.9 -17.1 234 97-367 53-286 (624)
234 3u64_A Protein TP_0956; tetrat 94.5 0.43 1.5E-05 42.1 11.4 94 184-279 179-283 (301)
235 1nzn_A CGI-135 protein, fissio 93.8 0.31 1.1E-05 36.9 7.8 87 427-516 16-106 (126)
236 3lvg_A Clathrin heavy chain 1; 93.7 1.7E-05 5.8E-10 74.2 -18.6 119 411-542 198-316 (624)
237 3o48_A Mitochondria fission 1 93.5 0.83 2.8E-05 34.7 9.7 77 477-553 35-114 (134)
238 1y8m_A FIS1; mitochondria, unk 93.4 2.1 7.2E-05 33.0 12.0 74 479-552 36-112 (144)
239 1v54_E Cytochrome C oxidase po 92.1 2.3 8E-05 30.3 9.6 56 500-555 28-83 (109)
240 4gns_B Protein CSD3, chitin bi 90.9 1.4 4.7E-05 45.2 10.9 127 138-265 253-398 (754)
241 1qsa_A Protein (soluble lytic 90.8 15 0.0005 36.9 22.7 77 207-289 76-152 (618)
242 2ff4_A Probable regulatory pro 90.0 3.9 0.00013 38.4 12.7 71 451-522 175-250 (388)
243 2y69_E Cytochrome C oxidase su 89.3 4.8 0.00016 30.5 9.6 59 500-558 71-129 (152)
244 2ff4_A Probable regulatory pro 88.7 3.7 0.00013 38.6 11.4 77 484-561 173-254 (388)
245 4gns_B Protein CSD3, chitin bi 88.3 7.6 0.00026 39.8 13.9 53 490-543 345-397 (754)
246 4b4t_P 26S proteasome regulato 88.2 19 0.00063 34.6 19.8 96 415-510 140-246 (445)
247 4ady_A RPN2, 26S proteasome re 88.1 29 0.00099 36.6 31.7 269 247-527 383-671 (963)
248 3o48_A Mitochondria fission 1 87.1 6 0.0002 30.1 9.2 72 443-516 36-110 (134)
249 4fhn_B Nucleoporin NUP120; pro 86.8 10 0.00034 41.7 14.9 144 415-565 815-985 (1139)
250 1y8m_A FIS1; mitochondria, unk 85.0 12 0.0004 28.9 11.6 71 444-516 36-109 (144)
251 1v54_E Cytochrome C oxidase po 84.0 9.6 0.00033 27.2 9.6 44 152-195 29-72 (109)
252 4fhn_B Nucleoporin NUP120; pro 83.8 17 0.00057 39.9 14.8 87 204-292 900-990 (1139)
253 3ffl_A Anaphase-promoting comp 83.7 9.7 0.00033 30.3 9.4 24 277-300 126-149 (167)
254 4ady_A RPN2, 26S proteasome re 83.3 49 0.0017 34.9 34.0 252 283-544 384-656 (963)
255 4b4t_P 26S proteasome regulato 83.2 33 0.0011 32.8 18.3 50 217-266 30-84 (445)
256 2y69_E Cytochrome C oxidase su 80.5 17 0.00058 27.6 9.6 46 151-196 71-116 (152)
257 1zbp_A Hypothetical protein VP 79.8 9.2 0.00032 33.2 8.6 53 457-510 7-59 (273)
258 3esl_A Checkpoint serine/threo 79.2 26 0.00087 28.9 11.2 56 460-515 92-148 (202)
259 3ffl_A Anaphase-promoting comp 79.0 11 0.00037 30.0 8.1 56 419-474 27-90 (167)
260 1wdy_A 2-5A-dependent ribonucl 78.7 19 0.00066 31.4 11.3 21 356-376 192-212 (285)
261 2wpv_A GET4, UPF0363 protein Y 78.6 37 0.0013 30.5 23.0 25 307-331 133-157 (312)
262 2uwj_G Type III export protein 76.6 18 0.00061 25.7 8.3 78 218-303 21-98 (115)
263 4b4t_R RPN7, 26S proteasome re 76.5 19 0.00064 34.3 10.9 62 170-231 133-196 (429)
264 1zbp_A Hypothetical protein VP 76.3 15 0.00051 31.9 8.9 119 420-549 5-132 (273)
265 2p58_C Putative type III secre 76.1 18 0.00063 25.7 9.3 78 218-303 22-99 (116)
266 3lpz_A GET4 (YOR164C homolog); 75.8 46 0.0016 30.1 18.8 167 346-545 38-215 (336)
267 3eiq_C Programmed cell death p 75.6 6.8 0.00023 36.0 7.1 25 241-265 57-81 (358)
268 4b4t_R RPN7, 26S proteasome re 75.4 34 0.0012 32.5 12.3 97 135-231 133-236 (429)
269 2wpv_A GET4, UPF0363 protein Y 73.1 52 0.0018 29.5 20.2 26 446-471 133-158 (312)
270 3lpz_A GET4 (YOR164C homolog); 70.7 62 0.0021 29.3 23.8 25 307-331 135-159 (336)
271 3hra_A Ankyrin repeat family p 69.2 45 0.0015 27.1 10.9 10 286-295 15-24 (201)
272 3txn_A 26S proteasome regulato 66.6 84 0.0029 29.3 21.1 298 238-548 19-345 (394)
273 2fu4_A Ferric uptake regulatio 64.5 26 0.00088 23.8 6.7 59 507-566 7-67 (83)
274 2uwj_G Type III export protein 63.2 38 0.0013 24.1 7.7 51 107-163 48-98 (115)
275 4a1g_A Mitotic checkpoint seri 63.0 53 0.0018 25.7 10.8 61 500-560 83-144 (152)
276 2p58_C Putative type III secre 62.4 39 0.0014 24.1 8.6 51 107-163 49-99 (116)
277 3esl_A Checkpoint serine/threo 60.7 70 0.0024 26.4 9.8 55 426-480 93-148 (202)
278 2ion_A PDCD4, programmed cell 58.9 63 0.0022 25.3 8.9 25 415-439 12-36 (152)
279 3mv2_A Coatomer subunit alpha; 58.8 83 0.0028 28.2 10.2 30 520-549 210-239 (325)
280 1wdy_A 2-5A-dependent ribonucl 58.3 90 0.0031 26.9 14.4 22 425-446 192-213 (285)
281 3kea_A K1L; tropism, ANK repea 58.3 95 0.0033 27.1 13.1 16 282-297 37-52 (285)
282 2nsz_A Programmed cell death p 56.9 61 0.0021 24.5 10.3 25 415-439 10-34 (129)
283 2wvi_A Mitotic checkpoint seri 56.2 74 0.0025 25.2 10.8 52 466-517 79-131 (164)
284 2zu6_B Programmed cell death p 55.0 18 0.00061 32.4 5.5 25 241-265 6-30 (307)
285 2fe3_A Peroxide operon regulat 54.0 51 0.0018 25.5 7.5 59 507-566 12-71 (145)
286 3hra_A Ankyrin repeat family p 53.4 86 0.0029 25.3 9.5 15 318-332 12-26 (201)
287 2xig_A Ferric uptake regulatio 53.1 48 0.0016 25.8 7.2 59 507-566 17-76 (150)
288 2qx5_A Nucleoporin NIC96; mRNA 52.4 2E+02 0.0068 29.1 19.1 42 173-215 157-198 (661)
289 1k1a_A B-cell lymphoma 3-encod 51.9 1E+02 0.0036 25.7 13.9 19 384-402 83-101 (241)
290 4aez_C MAD3, mitotic spindle c 51.7 1E+02 0.0035 25.9 9.1 54 500-553 132-186 (223)
291 3txn_A 26S proteasome regulato 51.5 1.5E+02 0.0053 27.5 22.5 296 203-512 19-344 (394)
292 3eu9_A Huntingtin-interacting 51.4 1E+02 0.0036 25.5 11.4 16 492-507 217-232 (240)
293 1mzb_A Ferric uptake regulatio 50.8 52 0.0018 25.1 6.9 58 508-566 9-68 (136)
294 2w57_A Ferric uptake regulatio 49.0 52 0.0018 25.6 6.8 59 507-566 7-67 (150)
295 2d2s_A Exocyst complex compone 48.2 1.2E+02 0.0041 25.8 9.4 87 175-264 25-117 (235)
296 2zu6_B Programmed cell death p 46.8 99 0.0034 27.6 9.0 23 102-124 7-29 (307)
297 1k1a_A B-cell lymphoma 3-encod 46.2 1.3E+02 0.0044 25.1 12.1 22 212-233 15-36 (241)
298 3eu9_A Huntingtin-interacting 45.6 93 0.0032 25.9 8.7 12 458-469 218-229 (240)
299 3eyy_A Putative iron uptake re 44.7 49 0.0017 25.6 6.0 58 507-566 9-67 (145)
300 1n11_A Ankyrin; clathrin, BAND 44.7 2E+02 0.0069 26.9 15.0 333 139-517 17-372 (437)
301 2d2s_A Exocyst complex compone 44.1 1.5E+02 0.0051 25.2 9.4 89 104-195 24-118 (235)
302 3ltm_A Alpha-REP4; protein eng 44.0 1.3E+02 0.0045 24.5 17.8 17 132-148 32-48 (211)
303 2wvi_A Mitotic checkpoint seri 43.4 86 0.003 24.8 7.1 53 150-202 77-130 (164)
304 3b7b_A Euchromatic histone-lys 43.0 1.4E+02 0.0049 24.7 9.5 217 208-441 13-236 (237)
305 4g8k_A 2-5A-dependent ribonucl 42.9 1.8E+02 0.0063 25.9 12.8 7 214-220 33-39 (337)
306 4ets_A Ferric uptake regulatio 41.8 85 0.0029 24.8 7.0 56 510-566 26-84 (162)
307 3ljn_A Hypothetical protein; a 41.2 1.4E+02 0.0049 27.0 9.8 13 319-331 181-193 (364)
308 4g8k_A 2-5A-dependent ribonucl 40.3 2E+02 0.0069 25.6 15.3 14 318-331 175-188 (337)
309 3mkr_B Coatomer subunit alpha; 39.3 1.1E+02 0.0036 27.5 7.7 30 520-549 201-230 (320)
310 3bu8_A Telomeric repeat-bindin 38.4 1E+02 0.0035 25.6 6.8 48 463-510 88-142 (235)
311 3eiq_C Programmed cell death p 38.2 2.4E+02 0.0081 25.9 13.0 59 205-265 56-116 (358)
312 2o03_A Probable zinc uptake re 37.5 51 0.0018 24.9 5.0 43 524-566 17-60 (131)
313 3jxi_A Vanilloid receptor-rela 37.2 39 0.0013 29.0 4.9 22 108-129 12-33 (260)
314 3jxi_A Vanilloid receptor-rela 35.9 56 0.0019 28.0 5.8 19 145-163 14-32 (260)
315 2cos_A Serine/threonine protei 35.0 33 0.0011 21.0 2.6 36 503-543 11-48 (54)
316 1n11_A Ankyrin; clathrin, BAND 34.6 2.9E+02 0.0098 25.8 15.4 332 104-482 17-372 (437)
317 1bpo_A Protein (clathrin); cla 34.1 2.7E+02 0.0092 26.6 9.8 63 135-198 363-425 (494)
318 3ltm_A Alpha-REP4; protein eng 33.9 1.9E+02 0.0065 23.5 18.8 165 81-265 19-183 (211)
319 3t8k_A Uncharacterized protein 33.7 1.4E+02 0.0049 23.9 7.5 26 177-202 44-69 (186)
320 3mwm_A ZUR, putative metal upt 33.6 55 0.0019 25.1 4.6 43 524-566 20-63 (139)
321 2ijq_A Hypothetical protein; s 31.9 1.9E+02 0.0064 22.8 7.7 50 496-545 46-103 (161)
322 2keb_A DNA polymerase subunit 31.6 1.4E+02 0.0047 21.1 6.3 28 431-458 28-55 (101)
323 4aez_C MAD3, mitotic spindle c 29.8 1.2E+02 0.004 25.5 6.1 51 465-515 132-183 (223)
324 4a1g_A Mitotic checkpoint seri 29.5 2E+02 0.0069 22.4 10.0 47 292-338 84-131 (152)
325 3ljn_A Hypothetical protein; a 29.3 3.1E+02 0.011 24.7 10.0 46 457-507 218-266 (364)
326 4b4t_S RPN3, 26S proteasome re 28.5 4.2E+02 0.014 25.7 10.9 64 413-476 232-299 (523)
327 1zl8_A LIN-7; heterodimer, alp 27.8 77 0.0026 19.0 3.2 19 497-515 8-26 (53)
328 2etb_A Transient receptor pote 26.6 1.6E+02 0.0056 24.8 7.2 22 178-199 9-30 (256)
329 2ion_A PDCD4, programmed cell 26.6 2.3E+02 0.0078 22.1 7.6 63 101-164 12-76 (152)
330 2fe3_A Peroxide operon regulat 26.3 2E+02 0.0067 22.1 6.7 44 489-532 28-71 (145)
331 2ijq_A Hypothetical protein; s 26.3 2.4E+02 0.0082 22.2 8.4 53 387-439 42-102 (161)
332 1mzb_A Ferric uptake regulatio 25.8 2.1E+02 0.0073 21.5 6.8 35 497-531 33-67 (136)
333 2xig_A Ferric uptake regulatio 24.7 2.4E+02 0.0083 21.7 7.6 59 473-532 18-76 (150)
334 2rfa_A Transient receptor pote 24.6 2.9E+02 0.01 22.6 11.1 55 490-545 159-222 (232)
335 2b7e_A PRE-mRNA processing pro 24.3 68 0.0023 20.2 2.8 29 185-213 3-31 (59)
336 3e3v_A Regulatory protein RECX 24.1 2.8E+02 0.0095 22.2 8.3 51 428-479 49-99 (177)
337 2dzn_A Probable 26S proteasome 23.7 2.8E+02 0.0094 22.7 7.9 13 214-226 10-22 (228)
338 4gq2_M Nucleoporin NUP120; bet 23.6 4.7E+02 0.016 27.8 11.1 47 519-565 899-950 (950)
339 2r9g_A AAA ATPase, central reg 23.3 3.1E+02 0.011 22.5 10.0 36 460-496 27-62 (204)
340 4ets_A Ferric uptake regulatio 23.2 2.2E+02 0.0075 22.4 6.5 46 487-532 37-84 (162)
341 4gq2_M Nucleoporin NUP120; bet 23.0 5.9E+02 0.02 27.1 11.7 29 345-373 899-927 (950)
342 2pnn_A Transient receptor pote 22.4 1.9E+02 0.0066 24.7 6.9 20 144-163 21-40 (273)
343 3bqo_A Telomeric repeat-bindin 22.2 86 0.0029 25.6 3.8 22 489-510 124-145 (211)
344 2w57_A Ferric uptake regulatio 22.1 2.5E+02 0.0084 21.7 6.5 36 497-532 32-67 (150)
345 3aji_A 26S proteasome non-ATPa 21.6 3.3E+02 0.011 22.2 11.1 19 280-298 10-28 (231)
346 2yru_A Steroid receptor RNA ac 21.4 1.8E+02 0.006 21.5 5.1 17 179-195 72-88 (118)
347 3t8k_A Uncharacterized protein 20.8 3.2E+02 0.011 21.7 10.4 16 327-342 93-108 (186)
348 3bge_A Predicted ATPase; struc 20.8 3.5E+02 0.012 22.2 8.7 93 453-545 10-110 (201)
349 3eyy_A Putative iron uptake re 20.5 2.1E+02 0.007 22.0 5.7 34 498-531 33-66 (145)
350 2f6m_A Suppressor protein STP2 20.3 1.2E+02 0.004 19.6 3.4 44 101-145 5-48 (65)
351 2keb_A DNA polymerase subunit 20.2 2.2E+02 0.0075 20.1 4.9 55 466-522 28-87 (101)
352 2nsz_A Programmed cell death p 20.1 2.8E+02 0.0095 20.7 8.9 63 101-164 10-74 (129)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-41 Score=347.86 Aligned_cols=472 Identities=12% Similarity=0.042 Sum_probs=388.4
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHH
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQ 154 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 154 (568)
+.|.+..+...+..+ ..++...|+.++..|.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|++
T Consensus 65 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 344445555555443 3457788888999999999999999999888854 4677888888889999999999999
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---------------CCCCCHhhHHHHHHHHHHcCCH
Q 041458 155 LVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK---------------GLVPNAFTYSFLLEAAYKERGV 219 (568)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~~~~ 219 (568)
+|+++... +++..+++.++.+|.+.|++++|.++|+++... +..++..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 98887542 568888899999999999999999988853211 2233578888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhH--------------------------------------HHHHHHHHhcCChHHHHHHH
Q 041458 220 HAAMKLLDDIIAKGGKPNLVSY--------------------------------------NVLLTGLCKEGRTEEAIRFF 261 (568)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~--------------------------------------~~ll~~~~~~g~~~~A~~~~ 261 (568)
++|.++|+++.+.+.. +...+ +.++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999988876422 23332 33355667889999999999
Q ss_pred HHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 041458 262 RDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRP 341 (568)
Q Consensus 262 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (568)
+++.+. .++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|+.++|.++++++.+.. +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 999876 5799999999999999999999999999998765 4578899999999999999999999999998654 34
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 041458 342 SAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVIT 420 (568)
Q Consensus 342 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 420 (568)
+..++..++..|.+.|++++|.++|+++.+..+. +...+.. +..+.+.|++++|.++|+++.+..+. +..+|+.++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHH
Confidence 7788999999999999999999999999886443 3444444 88999999999999999999877543 6788999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHc
Q 041458 421 SLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEY----DYKPD--VDNFNALLLGLCK 494 (568)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~ 494 (568)
+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999864 337889999999999999999999999999865 66777 7899999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhh
Q 041458 495 SRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDF 563 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 563 (568)
.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.++++++++.++.++.....+...|..
T Consensus 529 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp TTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999864 45889999999999999999999999999999999999999998887754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.8e-39 Score=331.60 Aligned_cols=444 Identities=11% Similarity=0.004 Sum_probs=382.0
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
..+.+.|++++|+.+|++++. ..|+..++..++..|.+.|++++|+.+|+.+... .++..+++.++.+|.+.|+++
T Consensus 92 ~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 167 (597)
T 2xpi_A 92 HDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQ 167 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHH
Confidence 456788999999999999986 4568889999999999999999999999998653 568999999999999999999
Q ss_pred hHHHHHHHHH-hC--------------CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHH------
Q 041458 151 YAMQLVEKME-DY--------------GYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFL------ 209 (568)
Q Consensus 151 ~a~~~~~~~~-~~--------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l------ 209 (568)
+|+++|+++. .. +.+.+..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+..+
T Consensus 168 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 246 (597)
T 2xpi_A 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLL 246 (597)
T ss_dssp HHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCS
T ss_pred HHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcc
Confidence 9999999532 21 23456899999999999999999999999999886422 33333332
Q ss_pred --------------------------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHH
Q 041458 210 --------------------------------LEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEA 257 (568)
Q Consensus 210 --------------------------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 257 (568)
+..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|
T Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 324 (597)
T 2xpi_A 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDV 324 (597)
T ss_dssp CHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHH
Confidence 44566788999999999998876 57999999999999999999999
Q ss_pred HHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 041458 258 IRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG 337 (568)
Q Consensus 258 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (568)
.++|+++.+.+.. +..+++.++.+|.+.|++++|..+++++.+.. +.+..+++.++..|.+.|++++|.++|+++.+.
T Consensus 325 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 402 (597)
T 2xpi_A 325 LAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM 402 (597)
T ss_dssp HHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999877543 78899999999999999999999999998654 567899999999999999999999999999875
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 041458 338 RFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKY 417 (568)
Q Consensus 338 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 417 (568)
.. .+..+|+.++.+|.+.|++++|+++|+++.+..+.........+..+.+.|++++|.+.|+++.+..+. +..+|+.
T Consensus 403 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 480 (597)
T 2xpi_A 403 DP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNE 480 (597)
T ss_dssp CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 42 367799999999999999999999999999876544334444488999999999999999999887554 7788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 041458 418 VITSLCRKGKTYQAFQLLYEMTKY----GFTPD--SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLG 491 (568)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 491 (568)
++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+. .+..+|..+..+
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~ 559 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-NDANVHTAIALV 559 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 999999999999999999999875 66787 67999999999999999999999999987653 388999999999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041458 492 LCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI 527 (568)
Q Consensus 492 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 527 (568)
|.+.|++++|.+.++++.+.. +.+...+..+..+|
T Consensus 560 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 560 YLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 999999999999999999852 33566666665554
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=6.6e-31 Score=259.52 Aligned_cols=204 Identities=10% Similarity=0.086 Sum_probs=148.8
Q ss_pred HHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---------hhh
Q 041458 82 AFLQLERMVSKGHKPDV-VQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGN---------VGY 151 (568)
Q Consensus 82 A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~ 151 (568)
+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 33444555555544433 34677788888888888888888888888888888888888888876654 466
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041458 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIA 231 (568)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 231 (568)
|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77788888777777888888888888888888888888888887777778888888888888888888888888888877
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHc
Q 041458 232 KGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCM 285 (568)
Q Consensus 232 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 285 (568)
.|+.||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 778888888888888888888888888888888777777888888777777765
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=5.5e-31 Score=260.08 Aligned_cols=206 Identities=17% Similarity=0.236 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC---------hH
Q 041458 116 KAIKVMEMMVSSGIIPDA-SSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGN---------LN 185 (568)
Q Consensus 116 ~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~ 185 (568)
.+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|++||..+||+||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 345556667666655443 35788889999999999999999999999999999999999999887654 57
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 041458 186 QSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLP 265 (568)
Q Consensus 186 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 265 (568)
+|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88889999988888999999999999999999999999999999888888999999999999999999999999999998
Q ss_pred hCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhc
Q 041458 266 SKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYH 321 (568)
Q Consensus 266 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (568)
+.|+.||..+|++||.+|++.|++++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999998888888999998888887753
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=5.2e-28 Score=235.37 Aligned_cols=383 Identities=15% Similarity=0.035 Sum_probs=286.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 041458 139 LVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERG 218 (568)
Q Consensus 139 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 218 (568)
+...+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3456677888888888888877652 4456677777888888888888888888877653 4477788888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHH
Q 041458 219 VHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAE 298 (568)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 298 (568)
+++|.+.|+++.... +.+...|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888888888887762 335567888888888888888888888888765322 345566677778888888888888888
Q ss_pred hccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh
Q 041458 299 MDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNE 378 (568)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 378 (568)
+.+.. +.+..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++.....+
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---- 234 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP---- 234 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT----
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc----
Confidence 77653 445677888888888888888888888888775432 445666667777777777777777766655421
Q ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 041458 379 GTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLC 458 (568)
Q Consensus 379 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 458 (568)
.+..++..+...+.+.|++++|++.|+++.+... .+..+|..+...+.
T Consensus 235 -------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 235 -------------------------------NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALK 282 (388)
T ss_dssp -------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHH
T ss_pred -------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHH
Confidence 1445667777778888888888888888777532 24567778888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 041458 459 MEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAE 538 (568)
Q Consensus 459 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 538 (568)
+.|++++|.+.|+++.+... .+..++..+...+...|++++|.+.++++.+. .+.+..++..+...+.+.|++++|.+
T Consensus 283 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888876533 36777888888888888888888888888764 24456778888888888888888888
Q ss_pred HHHHHHHcCCCCHHHHHHHHHhhhhcC
Q 041458 539 VLKELQLRQVVSESAVERLVMQYDFEG 565 (568)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~l~~~~~~~g 565 (568)
.++++++..+........+...+...|
T Consensus 361 ~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 361 HYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 888888888888888888777776655
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.2e-27 Score=229.80 Aligned_cols=382 Identities=14% Similarity=0.044 Sum_probs=317.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 041458 104 LLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGN 183 (568)
Q Consensus 104 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 183 (568)
+...+.+.|++++|++.++.+.+..+ .+...+..+...+...|++++|...++...+. .|.+..+|..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCC
Confidence 45677899999999999999988642 35667778888899999999999999998875 35688899999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 041458 184 LNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRD 263 (568)
Q Consensus 184 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 263 (568)
+++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998863 3356789999999999999999999999999873 33556777888899999999999999999
Q ss_pred hhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 041458 264 LPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSA 343 (568)
Q Consensus 264 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 343 (568)
+.+.... +..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++..+..+. +.
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 237 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CH
Confidence 9876332 57889999999999999999999999998765 456788999999999999999999999999876432 56
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041458 344 ASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLC 423 (568)
Q Consensus 344 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 423 (568)
.++..+...+.+.|++++|...++++.+..+. +...|..+...+.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----------------------------------~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-----------------------------------FPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-----------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------------------------------CHHHHHHHHHHHH
Confidence 78888888999999999999998888765321 3455777888888
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHH
Q 041458 424 RKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLE 503 (568)
Q Consensus 424 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 503 (568)
+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+..+ .+...+..+...|.+.|++++|.+
T Consensus 283 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888888763 44677888888889999999999999988887533 267788888999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 041458 504 VFQMMIEKGQMP-NETTYTILVEGIAHQD 531 (568)
Q Consensus 504 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 531 (568)
.++++.+. .| +...|..+...+...|
T Consensus 361 ~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 361 HYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 99998874 44 5667777766665554
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8e-25 Score=221.40 Aligned_cols=450 Identities=12% Similarity=0.044 Sum_probs=252.5
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041458 99 VQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGL 178 (568)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 178 (568)
..+......+.+.|++++|+..|+++.+.+ |+..+|..+..++.+.|++++|++.++++.+.+ |.+..+|..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 456667777888888888888888888764 678888888888888888888888888887753 44677888888888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---ChH
Q 041458 179 CMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEG---RTE 255 (568)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~ 255 (568)
.+.|++++|...|+++.+.+. ++......++..+........+.+.+..+...+..|+...+..-........ ...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 888888888888888887653 3444444444444443333333333322221111111111110000000000 011
Q ss_pred HHHHHHHHhhhC------CCCCChhHHHHHHHHHHc---CCCHHHHHHHHHHhcc-----CCC--------CcCHhhHHH
Q 041458 256 EAIRFFRDLPSK------GFEPNVVSYNILLRSLCM---EGRWEEANELLAEMDG-----GDR--------SPTIVTYNI 313 (568)
Q Consensus 256 ~A~~~~~~~~~~------~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ 313 (568)
.+...+...... ..+.+...+......+.. .|++++|...++++.+ ... +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 111111110000 001112233333333332 5666666666666554 200 112344555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCH
Q 041458 314 LIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKV 393 (568)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (568)
+...+...|++++|...|+++.+.... ...+..+...+...|++++|...++++....+............+...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 556666666666666666666554322 455555556666666666666666666655433333333335555666666
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041458 394 QEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVM 473 (568)
Q Consensus 394 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 473 (568)
++|...|+++....+. +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666554333 34456666666677777777777777666542 224556666677777777777777777666
Q ss_pred HhCCCC-CC----hhhHHHHHHHHHc---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 474 EEYDYK-PD----VDNFNALLLGLCK---SRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 474 ~~~~~~-p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (568)
.+.... ++ ...+..+...+.. .|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 542111 11 2366666777777 777777777777776642 33556666677777777777777777777777
Q ss_pred cCCCCHHHHHHH
Q 041458 546 RQVVSESAVERL 557 (568)
Q Consensus 546 ~~~~~~~~~~~l 557 (568)
.++.++.....+
T Consensus 478 ~~~~~~~~~~~~ 489 (514)
T 2gw1_A 478 LARTMEEKLQAI 489 (514)
T ss_dssp HCSSHHHHHHHH
T ss_pred hccccHHHHHHH
Confidence 776655554433
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.2e-24 Score=214.38 Aligned_cols=435 Identities=10% Similarity=-0.042 Sum_probs=301.4
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGY 151 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 151 (568)
.+.+.|++++|+..|+++++.. |+...|..+...+.+.|++++|++.++.+.+.+. .+..+|..+..++.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHH
Confidence 4567899999999999999864 6899999999999999999999999999998753 367789999999999999999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041458 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIA 231 (568)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 231 (568)
|.+.|+++.+.+ +++......++..+........+.+.+..+...+..|+...+..-...............+...+..
T Consensus 92 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 92 AMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 999999999875 3455555555555555444444444443332222222222111111111111111111111111111
Q ss_pred cCC---------CCCHhhHHHHHHHHHh---cCChHHHHHHHHHhhh-----CCC--------CCChhHHHHHHHHHHcC
Q 041458 232 KGG---------KPNLVSYNVLLTGLCK---EGRTEEAIRFFRDLPS-----KGF--------EPNVVSYNILLRSLCME 286 (568)
Q Consensus 232 ~~~---------~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~p~~~~~~~l~~~~~~~ 286 (568)
... +.+...+......+.. .|++++|..+|+++.+ ..- +.+...+..+...+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 100 1123344444444443 7888888888888766 211 12345667777788888
Q ss_pred CCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 041458 287 GRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCL 366 (568)
Q Consensus 287 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 366 (568)
|++++|...++++.+... +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...+
T Consensus 251 ~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp SCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 888888888888776542 277777888888888888888888888877543 25667777888888888888888888
Q ss_pred HHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-C
Q 041458 367 DQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFT-P 445 (568)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p 445 (568)
+++.+..+............+...|++++|...++.+....+. +...+..+...+...|++++|...++++.+.... +
T Consensus 328 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 328 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 8888776554444444466777888888888888887765443 4567888899999999999999999988764211 1
Q ss_pred C----hhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 041458 446 D----SYTYSSLIRGLCM---EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE 517 (568)
Q Consensus 446 ~----~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 517 (568)
+ ..++..+...+.. .|++++|.+.++.+.+.... +...+..+...|.+.|++++|.+.++++.+. .|+.
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 1 2378899999999 99999999999999875433 6788889999999999999999999999985 4554
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.6e-22 Score=205.71 Aligned_cols=443 Identities=12% Similarity=0.085 Sum_probs=277.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 041458 98 VVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRG 177 (568)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 177 (568)
...+..+...+.+.|++++|+..|+.+.+... .+..+|..+..+|.+.|++++|++.|+++.+.+ |.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 35567778888888999999999998887653 367788888888888999999999998888763 4567888888888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCChH
Q 041458 178 LCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGG--KPNLVSYNVLLTGLCKEGRTE 255 (568)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~ 255 (568)
+...|++++|.+.|+.+ .. .|+ .....+..+...+....|...++++..... .+........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 88999999999888633 22 222 222233445555556778888887754310 001111223334444555665
Q ss_pred HHHHHHHHhhhCCCCCChh-HHHHHHHHHHcC--------CCHHHHHHHHHHhccCCCCcCH-------hhHHHHHHHHH
Q 041458 256 EAIRFFRDLPSKGFEPNVV-SYNILLRSLCME--------GRWEEANELLAEMDGGDRSPTI-------VTYNILIGSLA 319 (568)
Q Consensus 256 ~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 319 (568)
.+...+...... .+... ....+...+... |++++|..+++++.+.. +.+. .++..+...+.
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHH
Confidence 555554443322 11111 222222222222 36777777777776553 2222 24555566677
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHH
Q 041458 320 YHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAI 399 (568)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 399 (568)
..|++++|...|+++.+.. |+...+..+...+...|++++|...++++.+..+............+...|++++|...
T Consensus 255 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7777777777777777653 34566666777777777777777777777766543333333336667777777777777
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041458 400 IQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK 479 (568)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (568)
|+++....+. +...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++.+....
T Consensus 333 ~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 7777665443 34567777777777788888888887777653 224556777777777778888888877776542211
Q ss_pred -----CChhhHHHHHHHHHcc----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 480 -----PDVDNFNALLLGLCKS----------RRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 480 -----p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
.....+..+...+... |++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1112233444556666 77788888887777642 3456777777777777888888888888887
Q ss_pred HcCCCCHHHHH
Q 041458 545 LRQVVSESAVE 555 (568)
Q Consensus 545 ~~~~~~~~~~~ 555 (568)
+..+.+.....
T Consensus 490 ~~~~~~~~~~~ 500 (537)
T 3fp2_A 490 ILARTMDEKLQ 500 (537)
T ss_dssp HHC--CHHHHH
T ss_pred HhCCCcHHHHH
Confidence 77777655544
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.9e-22 Score=200.27 Aligned_cols=315 Identities=12% Similarity=0.077 Sum_probs=159.8
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041458 132 DASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLE 211 (568)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 211 (568)
+...+..+...+.+.|++++|+++|+++.+. .+.+..+|..+..+|...|++++|.+.|+++.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 5556677777777777777777777777654 23456677777777777777777777777776653 224566666677
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH---hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCC
Q 041458 212 AAYKERGVHAAMKLLDDIIAKGGKPNL---VSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGR 288 (568)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 288 (568)
.+.+.|++++|.+.|+++..... .+. ..+..++..+.. ..+..+...+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 77777777777777777665421 123 444444333100 001112223444555
Q ss_pred HHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 041458 289 WEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQ 368 (568)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 368 (568)
+++|...++++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+... .+..++..+...|...|++++|...+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555554432 23444555555555555555555555555544321 2344455555555555555555555555
Q ss_pred HhhCCCCCChhhHH------------HHHHHHhCCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHH
Q 041458 369 MFHRRCKPNEGTYN------------GLAMLCGVGKVQEAFAIIQSLGNKQNSSP---QEFYKYVITSLCRKGKTYQAFQ 433 (568)
Q Consensus 369 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~ 433 (568)
+....+........ ....+...|++++|...|+++....+... ...+..+...+.+.|++++|+.
T Consensus 237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 54432211111000 02233333444444444444333222100 1234444455555555555555
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041458 434 LLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEE 475 (568)
Q Consensus 434 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 475 (568)
.++++.+.. +.+..+|..+..+|...|++++|.+.++++.+
T Consensus 317 ~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 317 VCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555544431 11344455555555555555555555555544
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=3.4e-22 Score=198.42 Aligned_cols=368 Identities=12% Similarity=0.058 Sum_probs=265.4
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 041458 165 PTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVL 244 (568)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (568)
|.+...+..+...+.+.|++++|.++|+++.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 3456667777777777777777777777776542 2356666667777777777777777777776653 2245566666
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCC-h---hHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHh
Q 041458 245 LTGLCKEGRTEEAIRFFRDLPSKGFEPN-V---VSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY 320 (568)
Q Consensus 245 l~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (568)
..+|.+.|++++|.+.|+++.+. .|+ . ..+..+...+.. ..+..+...+..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~ 155 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFG 155 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH
Confidence 66667777777777777666654 222 2 334444333211 122334556888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHH
Q 041458 321 HGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAII 400 (568)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 400 (568)
.|++++|...|+++.+... .+...+..+..+|.+.|++++|...++++.+..+......+.....+...|++++|...|
T Consensus 156 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999987643 367788999999999999999999999998875443333344478889999999999999
Q ss_pred HHHhhCCCCCChhhHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCCH
Q 041458 401 QSLGNKQNSSPQEFYKYV------------ITSLCRKGKTYQAFQLLYEMTKYGFTPD-----SYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 401 ~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~ 463 (568)
+++....+. +...+..+ ...+.+.|++++|...|+++.+. .|+ ...+..+...+.+.|++
T Consensus 235 ~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 235 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCH
Confidence 999876544 34444444 78899999999999999999885 444 34788899999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH------------HHhc
Q 041458 464 EEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEG------------IAHQ 530 (568)
Q Consensus 464 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~------------~~~~ 530 (568)
++|.+.++.+.+.... +...|..+..+|...|++++|.+.++++.+. .| +...+..+..+ |...
T Consensus 312 ~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~l 388 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKIL 388 (450)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGS
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHh
Confidence 9999999999865433 7889999999999999999999999999984 45 55666666532 3334
Q ss_pred C-----ChhHHHHHHHH-HHHcCCC---CH-------HHHHHHHHhhhhcCC
Q 041458 531 D-----ELELSAEVLKE-LQLRQVV---SE-------SAVERLVMQYDFEGI 566 (568)
Q Consensus 531 g-----~~~~a~~~~~~-~~~~~~~---~~-------~~~~~l~~~~~~~g~ 566 (568)
| +.+++.+.+++ ..+..+. .+ ..+..+...|..-|.
T Consensus 389 g~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d 440 (450)
T 2y4t_A 389 GVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD 440 (450)
T ss_dssp CSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSG
T ss_pred CCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCC
Confidence 4 56778888887 5666554 11 256667777766554
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.5e-22 Score=205.90 Aligned_cols=467 Identities=12% Similarity=0.041 Sum_probs=315.9
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
..+.+.|++++|+..|+++++.. +.+...|..+...+.+.|++++|++.|+++.+.+. .+..++..+..++...|+++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHcCCHH
Confidence 34677899999999999998874 45889999999999999999999999999998753 36788999999999999999
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK------GLVPNAFTYSFLLEAAYKERGVHAAMK 224 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~ 224 (568)
+|++.|+.+.. .|+ .....+..+...+....|...++++... ...|+. ..+..+....+.+.+..
T Consensus 111 ~A~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 111 DAMFDLSVLSL---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHhc---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhcChHHHHH
Confidence 99999974422 122 2233355566666778899999988653 122332 33444555566555544
Q ss_pred HHHHHHHcCCCCCHh-hHHHHHHHHHh--------cCChHHHHHHHHHhhhCCCCCC-------hhHHHHHHHHHHcCCC
Q 041458 225 LLDDIIAKGGKPNLV-SYNVLLTGLCK--------EGRTEEAIRFFRDLPSKGFEPN-------VVSYNILLRSLCMEGR 288 (568)
Q Consensus 225 ~~~~~~~~~~~~~~~-~~~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~ 288 (568)
.+...... .+... ....+...+.. .|++++|..+|+++.+.... + ..++..+...+...|+
T Consensus 182 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 182 SVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp TSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhccc
Confidence 43332211 11111 22233322222 24788899999888765322 2 2346667777888899
Q ss_pred HHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 041458 289 WEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQ 368 (568)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 368 (568)
+++|...++++... .|+...+..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...+++
T Consensus 259 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 259 LLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999998876 34577888888889999999999999998887643 2567788888889999999999999999
Q ss_pred HhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----
Q 041458 369 MFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFT---- 444 (568)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---- 444 (568)
+.+..+......+.....+...|++++|...++++....+. +...+..+...+...|++++|.+.|+++.+....
T Consensus 336 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 336 AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 98876554445555577888899999999999988876544 5567888899999999999999999998764211
Q ss_pred -CChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 041458 445 -PDSYTYSSLIRGLCME----------GLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQ 513 (568)
Q Consensus 445 -p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 513 (568)
.....+..+...+... |++++|...|+++.+.... +...+..+...|.+.|++++|.+.++++.+.
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 491 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL-- 491 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 1112244555677777 9999999999999876443 6788999999999999999999999999985
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcCC
Q 041458 514 MPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFEGI 566 (568)
Q Consensus 514 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 566 (568)
.|+.......+. +.++...-..+ +.++.-...+..++..|...|+
T Consensus 492 ~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~ 536 (537)
T 3fp2_A 492 ARTMDEKLQATT-------FAEAAKIQKRL-RADPIISAKMELTLARYRAKGM 536 (537)
T ss_dssp C--CHHHHHHHH-------HHHHHHHHHHH-HTC-------------------
T ss_pred CCCcHHHHHHHh-------HHHHHHHHHhc-cccHHHHHHHhhHHHHHhhccC
Confidence 343222211111 23333333333 4445555555666666665553
No 13
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=8.6e-18 Score=168.24 Aligned_cols=397 Identities=11% Similarity=0.018 Sum_probs=277.7
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChhhHHH
Q 041458 83 FLQLERMVSKGHKPDVVQATNLLYDLCK----ANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK----KGNVGYAMQ 154 (568)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~ 154 (568)
+..++...+. .+...+..+...|.. .+++++|+..|+...+.| +...+..|...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 4445555443 367777888888887 889999999999988864 67778888888888 889999999
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHH
Q 041458 155 LVEKMEDYGYPTNTVTYNSLVRGLCM----LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYK----ERGVHAAMKLL 226 (568)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~ 226 (568)
.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999988865 67777788888887 788999999999888765 56677777777776 77888888888
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHc----CCCHHHHHHHHHH
Q 041458 227 DDIIAKGGKPNLVSYNVLLTGLCK----EGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCM----EGRWEEANELLAE 298 (568)
Q Consensus 227 ~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 298 (568)
++..+.| +...+..+...|.. .++.++|.++|++..+.| +...+..+...|.. .+++++|..+|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 8887764 56677777777776 788888888888877654 55667777777765 7788888888888
Q ss_pred hccCCCCcCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 041458 299 MDGGDRSPTIVTYNILIGSLAY----HGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSE-----GKVDLVVKCLDQM 369 (568)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~ 369 (568)
..+.+ +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|... +++++|...+++.
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 77654 45566666777766 777888888888777653 344555555555555 5666666666655
Q ss_pred hhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCC
Q 041458 370 FHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKG---KTYQAFQLLYEMTKYGFTPD 446 (568)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~ 446 (568)
.+.+ +...+..+...|...| +.++|++.|++..+.| +
T Consensus 323 ~~~~-------------------------------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~ 362 (490)
T 2xm6_A 323 AEQG-------------------------------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---E 362 (490)
T ss_dssp HHTT-------------------------------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---C
T ss_pred HhcC-------------------------------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---C
Confidence 5432 2334445555555544 6677777777777653 5
Q ss_pred hhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHHCCCC-C-C
Q 041458 447 SYTYSSLIRGLCM----EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK----SRRTDLSLEVFQMMIEKGQM-P-N 516 (568)
Q Consensus 447 ~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-p-~ 516 (568)
...+..|...|.. .+++++|.++|++..+.+ +...+..+...|.. .++.++|.+.|++..+.+.. | +
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~ 439 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT 439 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC
Confidence 5667777777777 778888888888877654 46677777777776 77888888888888776432 2 2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 517 ETTYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 517 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
......+...+. .+.+.+.+..++..+..+
T Consensus 440 ~~a~~~l~~~~~--~~~~~a~~~a~~~~~~~~ 469 (490)
T 2xm6_A 440 ENRNITEKKLTA--KQLQQAELLSQQYIEKYA 469 (490)
T ss_dssp HHHHHHHTTSCH--HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCH--hHHHHHHHHHHHHHHHHH
Confidence 333333322222 234455555555555543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=3.6e-19 Score=170.75 Aligned_cols=331 Identities=9% Similarity=0.041 Sum_probs=217.0
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHH
Q 041458 202 NAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLR 281 (568)
Q Consensus 202 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 281 (568)
|...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++.+.... +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 34566777777888888888888888887763 335677777888888888888888888887765322 5567777778
Q ss_pred HHHcCCCHHHHHHHHHHhccCCCC---cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 041458 282 SLCMEGRWEEANELLAEMDGGDRS---PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGK 358 (568)
Q Consensus 282 ~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 358 (568)
.+...|++++|...++++.+.. + .+...+..+...+. ...+..+...+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 8888888888888888877653 2 23334433311000 0001112334444555
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 359 VDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEM 438 (568)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (568)
+++|...++++.+..+............+...|++++|...++++....+. +...+..+...+...|++++|...+++.
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555554443322222222244445555555555555555544322 4556777777777778888888888777
Q ss_pred HHCCCCCChhhHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccCChHHHH
Q 041458 439 TKYGFTPDSYTYS------------SLIRGLCMEGLIEEALEIFVVMEEYDYKPDV----DNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 439 ~~~~~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~ 502 (568)
.+... .+...+. .+...+...|++++|.+.++++.+.... +. ..+..+...+...|++++|.
T Consensus 215 ~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 76421 1222222 3366688889999999999888865333 33 23455778888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhh
Q 041458 503 EVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYD 562 (568)
Q Consensus 503 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (568)
+.++++.+. .+.+..+|..+...+...|++++|.+.++++++..+.+......+.+.+.
T Consensus 293 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 293 RICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 999998885 24477888888899999999999999999999999888887777766654
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=2.6e-17 Score=164.72 Aligned_cols=369 Identities=12% Similarity=0.022 Sum_probs=254.6
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChHHHHH
Q 041458 118 IKVMEMMVSSGIIPDASSYTYLVNCLCK----KGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM----LGNLNQSLQ 189 (568)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~ 189 (568)
+..+....+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44555555543 56666666666666 677788888887777654 56677777777777 777777777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHHHH
Q 041458 190 FLDRLIQKGLVPNAFTYSFLLEAAYK----ERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCK----EGRTEEAIRFF 261 (568)
Q Consensus 190 ~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~ 261 (568)
.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 777777654 55666666666666 667777777777776654 44555566666655 56677777777
Q ss_pred HHhhhCCCCCChhHHHHHHHHHHc----CCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHh----cCChHHHHHHHHH
Q 041458 262 RDLPSKGFEPNVVSYNILLRSLCM----EGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY----HGKTDHALKVLDE 333 (568)
Q Consensus 262 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 333 (568)
++..+.| +...+..+...|.. .++.++|.++|++..+.+ +...+..+...|.. .++.++|.++|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 7666553 45566666666665 666677777766666544 44555556655554 5666666666666
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChh
Q 041458 334 MVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQE 413 (568)
Q Consensus 334 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 413 (568)
..+.+ +...+..+...|... ....++.++|...|++..+.+ +..
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g------------------------------~~~~~d~~~A~~~~~~a~~~~---~~~ 292 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQG------------------------------LAGAKEPLKALEWYRKSAEQG---NSD 292 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHT------------------------------TTSSCCHHHHHHHHHHHHTTT---CHH
T ss_pred HHHCC---CHHHHHHHHHHHHCC------------------------------CCCCCCHHHHHHHHHHHHHcC---CHH
Confidence 65543 223333333333330 000344555555555544432 344
Q ss_pred hHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCChhhH
Q 041458 414 FYKYVITSLCRK-----GKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEG---LIEEALEIFVVMEEYDYKPDVDNF 485 (568)
Q Consensus 414 ~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~ 485 (568)
.+..+...|... ++.++|+..|++..+.| +...+..+...|...| ++++|.++|++..+.| +...+
T Consensus 293 a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 366 (490)
T 2xm6_A 293 GQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQ 366 (490)
T ss_dssp HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHH
Confidence 556666677766 89999999999998865 4567788888888766 8899999999999864 67889
Q ss_pred HHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC
Q 041458 486 NALLLGLCK----SRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH----QDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 486 ~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~ 549 (568)
..+...|.. .+++++|.+.+++..+.| +...+..|...|.. .++.++|..++++..+.++.
T Consensus 367 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 367 FNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 999999988 899999999999999865 57788888888888 89999999999999999965
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=3.1e-18 Score=173.27 Aligned_cols=434 Identities=10% Similarity=0.003 Sum_probs=287.2
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 041458 86 LERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYP 165 (568)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 165 (568)
|++.++.. +-+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|.++|+++....
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 45555543 447888888887 477899999999999998764 3367788889999999999999999999988753
Q ss_pred CcHHHHHHHHHHH-HhcCChHHHHH----HHHHHHHC-CCCC-CHhhHHHHHHHHHH---------cCCHHHHHHHHHHH
Q 041458 166 TNTVTYNSLVRGL-CMLGNLNQSLQ----FLDRLIQK-GLVP-NAFTYSFLLEAAYK---------ERGVHAAMKLLDDI 229 (568)
Q Consensus 166 ~~~~~~~~li~~~-~~~g~~~~a~~----~~~~m~~~-~~~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~~ 229 (568)
|+...|..++... ...|+.++|.+ +|++.... |..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5777787777533 35677776665 66666542 4433 45667777666554 57778888888887
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHH------hccCC
Q 041458 230 IAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAE------MDGGD 303 (568)
Q Consensus 230 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~------~~~~~ 303 (568)
+..........|..........|. ..+..++. .+.+++..|..++.+ ..+..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 763111111233322221100110 01111110 122345555555544 22211
Q ss_pred ---CCcC--------HhhHHHHHHHHHhc----CCh----HHHHHHHHHHHHCCCCCCcccHHHHHHHHHh-------cC
Q 041458 304 ---RSPT--------IVTYNILIGSLAYH----GKT----DHALKVLDEMVKGRFRPSAASYNPIIARLCS-------EG 357 (568)
Q Consensus 304 ---~~~~--------~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~ 357 (568)
++|+ ...|...+...... ++. +++..+|++.+... +.+...|..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 2332 23444444333221 222 36777888877653 2356677777777665 68
Q ss_pred CHH-------HHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 041458 358 KVD-------LVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTY 429 (568)
Q Consensus 358 ~~~-------~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 429 (568)
+++ +|..++++.++.-.+.+...+.. +..+.+.|++++|..+|+++.+..+......|..++..+.+.|+.+
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHH
Confidence 876 88889988886211222333333 6677788999999999998887644322357888888888999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 041458 430 QAFQLLYEMTKYGFTPDSYTYSSLIRG-LCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMM 508 (568)
Q Consensus 430 ~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 508 (568)
+|.++|++..+.. +.+...|...+.. +...|+.++|..+|+...+..+. +...|..++..+.+.|+.++|..+|++.
T Consensus 374 ~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 374 SGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 9999999998752 2223333333322 33689999999999998865332 6889999999999999999999999999
Q ss_pred HHCC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 509 IEKG-QMP--NETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 509 ~~~g-~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
+..+ ..| ....|...+......|+.+.+.++.+++.+..+.
T Consensus 452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 9863 233 2458888888888999999999999999988774
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.1e-18 Score=167.29 Aligned_cols=331 Identities=12% Similarity=0.041 Sum_probs=247.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 041458 167 NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLT 246 (568)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 246 (568)
++..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 56788899999999999999999999998864 3468899999999999999999999999999873 336788999999
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCC--CChhHHHHH------------HHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHH
Q 041458 247 GLCKEGRTEEAIRFFRDLPSKGFE--PNVVSYNIL------------LRSLCMEGRWEEANELLAEMDGGDRSPTIVTYN 312 (568)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (568)
.+...|++++|...|+++.+.... .+...+..+ ...+...|++++|...++++.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999876320 144445444 467778888888888888877654 45677788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCC
Q 041458 313 ILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGK 392 (568)
Q Consensus 313 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (568)
.+...+...|++++|...++++.+... .+...+..+...+...|++++|...+++..+..+..... +
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~----------- 225 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC-F----------- 225 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-H-----------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHH-H-----------
Confidence 888888888888888888888877642 356677777778888888888888888777653222111 1
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHH
Q 041458 393 VQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDS----YTYSSLIRGLCMEGLIEEALE 468 (568)
Q Consensus 393 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~ 468 (568)
..+..+. .......+...+.+.|++++|...++++.+.... +. ..+..+...+...|++++|.+
T Consensus 226 -----~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 226 -----AHYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp -----HHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----HHHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 0111000 0111223466678889999999999988875322 22 234557788889999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 041458 469 IFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEGIA 528 (568)
Q Consensus 469 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~ 528 (568)
.++...+.... +...|..+...|...|++++|.+.++++.+. .| +...+..+..+..
T Consensus 294 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 294 ICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 99998875433 7788889999999999999999999999875 45 4566665555544
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.8e-17 Score=167.63 Aligned_cols=410 Identities=10% Similarity=-0.009 Sum_probs=260.2
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHhcCChhhH
Q 041458 74 HRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNC-LCKKGNVGYA 152 (568)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a 152 (568)
.+.|++++|..+|+++++. .+.+...|..++..+.+.|+++.|..+|+++.+.. |+...|..++.. ....|+++.|
T Consensus 23 ~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTH
T ss_pred HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhH
Confidence 5679999999999999987 45588899999999999999999999999999874 677788877753 3456888887
Q ss_pred HH----HHHHHHh-CCCC-CcHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 041458 153 MQ----LVEKMED-YGYP-TNTVTYNSLVRGLCM---------LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKER 217 (568)
Q Consensus 153 ~~----~~~~~~~-~~~~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 217 (568)
.+ +|++... .|.. ++...|...+....+ .|+++.|..+|++.++....+....|..........+
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhc
Confidence 76 7776654 3433 357788888887765 6889999999999987311111233333222111111
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHh------hhCC---CCCC--------hhHHHHHH
Q 041458 218 GVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDL------PSKG---FEPN--------VVSYNILL 280 (568)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~------~~~~---~~p~--------~~~~~~l~ 280 (568)
. ..+..+ +. .+.++++.|..++..+ .+.. +.|+ ...|...+
T Consensus 180 ~-~~~~~~-------------------l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 180 I-HLAKKM-------------------IE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp H-HHHHHH-------------------HH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred h-hHHHHH-------------------HH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 0 001111 10 0123344444444431 1111 1222 13344333
Q ss_pred HHHHcC----CCH----HHHHHHHHHhccCCCCcCHhhHHHHHHHHHh-------cCChH-------HHHHHHHHHHHCC
Q 041458 281 RSLCME----GRW----EEANELLAEMDGGDRSPTIVTYNILIGSLAY-------HGKTD-------HALKVLDEMVKGR 338 (568)
Q Consensus 281 ~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~ 338 (568)
...... ++. +++..+|++..... +.+...|..++..+.+ .|+++ +|..+|++..+.-
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 322211 222 35566666665542 3456666666666654 57765 6777777776521
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 041458 339 FRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKY 417 (568)
Q Consensus 339 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 417 (568)
.+.+...|..++..+.+.|++++|..+|+++++..+......+.. +..+.+.|+.++|..+|++..+..+. +...|..
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~ 395 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVT 395 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHH
Confidence 222456667777777777777777777777776532211123333 44555677777788888777765332 2222222
Q ss_pred HHH-HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC--ChhhHHHHHHHHH
Q 041458 418 VIT-SLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDY-KP--DVDNFNALLLGLC 493 (568)
Q Consensus 418 li~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p--~~~~~~~li~~~~ 493 (568)
.+. .+...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++....+. .| ....|...+....
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 221 2335789999999999887752 22567888888888899999999999999887532 22 2447888888888
Q ss_pred ccCChHHHHHHHHHHHHC
Q 041458 494 KSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~ 511 (568)
..|+.+.+.++.+++.+.
T Consensus 475 ~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 475 NIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HSSCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 889999999999888874
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.7e-18 Score=164.02 Aligned_cols=281 Identities=9% Similarity=-0.087 Sum_probs=126.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHh
Q 041458 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY 320 (568)
Q Consensus 241 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (568)
+..+...+...|++++|.++|+++.+.... +...+..++.++...|++++|..+++++.+.. +.+...+..+...+..
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 333344444444444444444444333111 22233333344444444444444444443322 2233344444444444
Q ss_pred cC-ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHH
Q 041458 321 HG-KTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAI 399 (568)
Q Consensus 321 ~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 399 (568)
.| ++++|.+.|+++.+.... +...|..+...+...|++++|...++++.+..+......+.....+...|++++|...
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44 444444444444433211 2333444444444444444444444444433222222222222233333333333333
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--------CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041458 400 IQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYG--------FTPDSYTYSSLIRGLCMEGLIEEALEIFV 471 (568)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 471 (568)
+++.....+. +...+..+...+...|++++|...+++..+.. ...+..++..+...+...|++++|.+.++
T Consensus 182 ~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 182 FSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3333332221 33445555556666666666666666555421 02223455666666666666666666666
Q ss_pred HHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041458 472 VMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI 527 (568)
Q Consensus 472 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 527 (568)
+..+.... +...+..+...|.+.|++++|.+.++++.+.. +.+...+..+..++
T Consensus 261 ~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 261 QALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 66544322 45556666666666666666666666665531 22445555555555
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.5e-18 Score=164.37 Aligned_cols=291 Identities=11% Similarity=-0.019 Sum_probs=247.7
Q ss_pred CCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH
Q 041458 270 EPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPI 349 (568)
Q Consensus 270 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 349 (568)
..+...+..+...+...|++++|.++++++.+.. +.+...+..++..+...|++++|..+++++.+... .+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHH
Confidence 4466778888999999999999999999998765 45667788888999999999999999999988643 367788889
Q ss_pred HHHHHhcC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 041458 350 IARLCSEG-KVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKT 428 (568)
Q Consensus 350 i~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 428 (568)
...+...| ++++|...++++.+..+......+.....+...|++++|...|+++....+. +...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 99999999 9999999999999876555555555578889999999999999999887554 445677789999999999
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHccCChHH
Q 041458 429 YQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYD--------YKPDVDNFNALLLGLCKSRRTDL 500 (568)
Q Consensus 429 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~ 500 (568)
++|.+.+++..+.. +.+...+..+...+...|++++|.+.++++.+.. .+.+...+..+...|...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999864 3357889999999999999999999999987531 13346789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhh-hhcC
Q 041458 501 SLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQY-DFEG 565 (568)
Q Consensus 501 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g 565 (568)
|.+.++++.+.. +.+...|..+...+...|++++|.++++++.+..+.+......+...+ ...|
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g 319 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhC
Confidence 999999999863 446788999999999999999999999999999999999999998887 3443
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=2.1e-18 Score=166.20 Aligned_cols=289 Identities=10% Similarity=-0.042 Sum_probs=194.6
Q ss_pred cCChHHHHH-HHHHhhhCCC---CCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHH
Q 041458 251 EGRTEEAIR-FFRDLPSKGF---EPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDH 326 (568)
Q Consensus 251 ~g~~~~A~~-~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 326 (568)
.|++++|.. .|++...... ..+...+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355555655 5554433211 1123445555666666666666666666665543 3345556666666666666666
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH---------------HHHHHHhCC
Q 041458 327 ALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYN---------------GLAMLCGVG 391 (568)
Q Consensus 327 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~ 391 (568)
|...|+++.+... .+..++..+...+...|++++|...++++....+........ .+..+...|
T Consensus 117 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 6666666655432 244555556666666666666666666666544332222110 122333778
Q ss_pred CHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 041458 392 KVQEAFAIIQSLGNKQNSS-PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIF 470 (568)
Q Consensus 392 ~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 470 (568)
++++|...|+++....+.. +...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|.+.|
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8899999998887765543 56788889999999999999999999988763 335778999999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCChhHHHHH
Q 041458 471 VVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPN-----------ETTYTILVEGIAHQDELELSAEV 539 (568)
Q Consensus 471 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----------~~~~~~ll~~~~~~g~~~~a~~~ 539 (568)
+++.+.... +...+..+..+|.+.|++++|.+.++++.+.. +.+ ..+|..+..++...|+.++|..+
T Consensus 275 ~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 275 RRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 999875433 67889999999999999999999999998742 112 68899999999999999999988
Q ss_pred HHHHH
Q 041458 540 LKELQ 544 (568)
Q Consensus 540 ~~~~~ 544 (568)
+++.+
T Consensus 353 ~~~~l 357 (368)
T 1fch_A 353 DARDL 357 (368)
T ss_dssp HTTCH
T ss_pred HHHHH
Confidence 77543
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=3.9e-18 Score=164.24 Aligned_cols=291 Identities=13% Similarity=0.034 Sum_probs=219.2
Q ss_pred hhccCChHHHHH-HHHHHHhCCCC---CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 041458 73 RHRDHKLNDAFL-QLERMVSKGHK---PDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGN 148 (568)
Q Consensus 73 ~~~~~~~~~A~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 148 (568)
+...|++++|+. .|++.+..... .+...+..+...+.+.|++++|+..|+.+.+... .+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcC
Confidence 344578888888 77765543221 1356678888999999999999999999998753 367788899999999999
Q ss_pred hhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHH---------------HHHHH
Q 041458 149 VGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSF---------------LLEAA 213 (568)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~---------------li~~~ 213 (568)
+++|++.|+++.+.. +.+..++..+...|...|++++|.+.++++.+.... +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999998764 457889999999999999999999999999886432 2222221 23334
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHH
Q 041458 214 YKERGVHAAMKLLDDIIAKGGKP-NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEA 292 (568)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 292 (568)
...|++++|...|+++....... +..++..+...+.+.|++++|...|+++.+... .+...+..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHH
Confidence 48889999999999988773321 577888888899999999999999998877632 2567888888999999999999
Q ss_pred HHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----------CcccHHHHHHHHHhcCCHHHH
Q 041458 293 NELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRP----------SAASYNPIIARLCSEGKVDLV 362 (568)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a 362 (568)
...++++.+.. +.+..++..+...|.+.|++++|...|+++.+..... ...+|..+..++...|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999887654 4567788889999999999999999998887642211 146788888888899999888
Q ss_pred HHHHHH
Q 041458 363 VKCLDQ 368 (568)
Q Consensus 363 ~~~~~~ 368 (568)
..++.+
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 877653
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=3.7e-17 Score=153.77 Aligned_cols=239 Identities=15% Similarity=0.145 Sum_probs=70.0
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHH
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQ 154 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 154 (568)
+.|++++|...++++ ++...|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 445566666666655 12235666666666666666666666432 355566666666666666666666
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 041458 155 LVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGG 234 (568)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 234 (568)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 55544442 2345556666666666666666665553 245556666666666666666666666644
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHH
Q 041458 235 KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNIL 314 (568)
Q Consensus 235 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 314 (568)
..|..++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+. ..+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 246666666666666666666666551 55666666666666666666644433321 122223345
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 041458 315 IGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCS 355 (568)
Q Consensus 315 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 355 (568)
+..|.+.|.+++|..+++..+... +-....|+.+.-+|++
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 556666666666666666655433 2233444444444443
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=1.7e-18 Score=166.56 Aligned_cols=265 Identities=9% Similarity=-0.031 Sum_probs=176.2
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 041458 274 VSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARL 353 (568)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 353 (568)
..+..+...+.+.|++++|...|+++.+.. +.+..++..+...|...|++++|+..|+++.+... .+..++..+...|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 334555555555555555555555554433 33445555555555555555555555555554321 1344555555555
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhH----------HHHHHHHhCCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHH
Q 041458 354 CSEGKVDLVVKCLDQMFHRRCKPNEGTY----------NGLAMLCGVGKVQEAFAIIQSLGNKQNSS-PQEFYKYVITSL 422 (568)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~ 422 (568)
...|++++|...++++.+..+....... .....+...|++++|...|+++....+.. +...+..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 5555555555555555543211111110 11345566777777777777776654432 567788899999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHH
Q 041458 423 CRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 423 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 502 (568)
...|++++|++.|+++.+.. +.+..+|..+..+|...|++++|.+.|+++.+.... +...|..+..+|.+.|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998763 336788999999999999999999999999876433 6888999999999999999999
Q ss_pred HHHHHHHHCCC---CC--------CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 041458 503 EVFQMMIEKGQ---MP--------NETTYTILVEGIAHQDELELSAEVLKE 542 (568)
Q Consensus 503 ~~~~~m~~~g~---~p--------~~~~~~~ll~~~~~~g~~~~a~~~~~~ 542 (568)
+.++++.+... .| +..+|..+..++...|+.+.+.++.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999987410 00 257899999999999999988877654
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=5.7e-15 Score=154.87 Aligned_cols=409 Identities=14% Similarity=0.114 Sum_probs=271.8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHH
Q 041458 98 VVQATNLLYDLCKANKMKKAIKVMEMMVSSGI--IPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLV 175 (568)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 175 (568)
+.--...+++|...|.+.+|+++++++...+- .-+...-+.++.+..+. +..+..+..+++... + ...+.
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA 1056 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIA 1056 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHH
Confidence 33445566777777888888888887774321 12334455566555555 445555555544321 1 33466
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChH
Q 041458 176 RGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTE 255 (568)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 255 (568)
..+...|.+++|.++|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++.+.|+++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHH
Confidence 77777888888888888752 11222222222 6677888887777552 5677778888888888888
Q ss_pred HHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 041458 256 EAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMV 335 (568)
Q Consensus 256 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (568)
+|++.|.+.. |...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++.... .
T Consensus 1123 EAIdsYiKAd------D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I 1190 (1630)
T 1xi4_A 1123 EAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----I 1190 (1630)
T ss_pred HHHHHHHhcC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----H
Confidence 8888886642 66777778888888888888888887766543 2333333577788888877753333 2
Q ss_pred HCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhH
Q 041458 336 KGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFY 415 (568)
Q Consensus 336 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 415 (568)
+ .++...|..+...|...|++++|..+|..+. .....+..+++.|++++|.+.+++.. +..+|
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~--------ny~rLA~tLvkLge~q~AIEaarKA~------n~~aW 1253 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKAN------STRTW 1253 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh--------HHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHH
Confidence 2 2355566677778888888888888887751 22233677788888888888888763 45778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 041458 416 KYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKS 495 (568)
Q Consensus 416 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 495 (568)
..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+-+..+|.+.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC
Confidence 88888888888888887766542 3355667788999999999999999998887554 33556677777777664
Q ss_pred --CChHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc------------CCCCHHHHH
Q 041458 496 --RRTDLSLEVFQMMIEKGQMP------NETTYTILVEGIAHQDELELSAEVLKELQLR------------QVVSESAVE 555 (568)
Q Consensus 496 --g~~~~a~~~~~~m~~~g~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------~~~~~~~~~ 555 (568)
++..++.++|..-.. ++| +...|.-++-.|.+.|+++.|...+-+-... .+.+++.+.
T Consensus 1328 ~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyy 1405 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYY 1405 (1630)
T ss_pred CHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHH
Confidence 345555555553332 233 5678999999999999999987433222111 455888888
Q ss_pred HHHHhhhhcC
Q 041458 556 RLVMQYDFEG 565 (568)
Q Consensus 556 ~l~~~~~~~g 565 (568)
+.+..|...+
T Consensus 1406 kai~Fyl~~~ 1415 (1630)
T 1xi4_A 1406 RAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHhhC
Confidence 8888876443
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=2.6e-17 Score=158.22 Aligned_cols=268 Identities=15% Similarity=0.027 Sum_probs=207.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
+...+..+...+.+.|++++|+..|+.+.+... .+..+|..+..+|...|++++|++.|+++.+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 455688888999999999999999999988653 367889999999999999999999999998763 456889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC---------CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHH
Q 041458 177 GLCMLGNLNQSLQFLDRLIQKGLV---------PNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGK-PNLVSYNVLLT 246 (568)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~ 246 (568)
+|...|++++|.+.|+++.+.... .....+..+...+...|++++|.+.|+++...... .+..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999999875211 01222334577888889999999999999887332 15778888999
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHH
Q 041458 247 GLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDH 326 (568)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 326 (568)
.|...|++++|.+.|+++.+... .+..+|..+..+|...|++++|...++++.+.. +.+..++..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999887633 367788899999999999999999999887764 4467888889999999999999
Q ss_pred HHHHHHHHHHCCCC-----------CCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 041458 327 ALKVLDEMVKGRFR-----------PSAASYNPIIARLCSEGKVDLVVKCLDQ 368 (568)
Q Consensus 327 a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~ 368 (568)
|...|+++.+.... .+...|..+..++...|+.+.+..+..+
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999988764211 1356778888888888888877766554
No 27
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=3.1e-14 Score=149.43 Aligned_cols=372 Identities=15% Similarity=0.127 Sum_probs=238.0
Q ss_pred chhhccCChHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGH--KPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGN 148 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 148 (568)
..|...|.+.+|+.+++..+..+. .-+....+.++....+. +..+..+..+..... + ..-+...+...|.
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNEL 1064 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCC
Confidence 457789999999999999884421 13445566666666665 445555555554421 1 3336667777888
Q ss_pred hhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 041458 149 VGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDD 228 (568)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 228 (568)
+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|...|.+
T Consensus 1065 yEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 8888888887531 2333333332 5677888888777552 567778888888888888888888855
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCH
Q 041458 229 IIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTI 308 (568)
Q Consensus 229 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 308 (568)
. .|...|..++.++.+.|++++|.++|...++.. ++....+.++.+|++.+++++..... . .++.
T Consensus 1131 A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A 1131 A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence 3 266777778888888888888888887766553 33333445777788887777544332 1 3355
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHH
Q 041458 309 VTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAML 387 (568)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~ 387 (568)
..|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|.. ...+
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHH
Confidence 56667778888888888888888764 367778888888888888888877662 3344443 3444
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh--cCCHHH
Q 041458 388 CGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM--EGLIEE 465 (568)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~ 465 (568)
...|++..|......+. .+...+..++..|.+.|.+++|+.+++...... +-....|.-+...+++ -+++.+
T Consensus 1261 ve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred hhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHH
Confidence 55666666666554322 244456667777777777777777776665432 2223345445555544 344445
Q ss_pred HHHHHHHHHhCCCCC------ChhhHHHHHHHHHccCChHHHH
Q 041458 466 ALEIFVVMEEYDYKP------DVDNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 466 a~~~~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~a~ 502 (568)
+.++|..-.. ++| +...|..++..|.+.|+++.|.
T Consensus 1335 hlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1335 HLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 5555543221 111 4556777777777777777766
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=2.9e-16 Score=147.69 Aligned_cols=284 Identities=14% Similarity=0.157 Sum_probs=126.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 041458 110 KANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQ 189 (568)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 189 (568)
+.|++++|.++++++. ++.+|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678999999999883 3358999999999999999999999653 477789999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 041458 190 FLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGF 269 (568)
Q Consensus 190 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 269 (568)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77777664 4567888899999999999999888874 367779999999999999999999999976
Q ss_pred CCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH
Q 041458 270 EPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPI 349 (568)
Q Consensus 270 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 349 (568)
..|..++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+. ..+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 368999999999999999999999882 68899999999999999999966554422 233445568
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCC-------ChhhHHHHHHHH
Q 041458 350 IARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSS-------PQEFYKYVITSL 422 (568)
Q Consensus 350 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~li~~~ 422 (568)
+..|.+.|++++|..+++..+... .-....|.-+..+...-+++...+-++....+-..| +...|..++..|
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999998765 333444544333333333444333333332221112 356799999999
Q ss_pred HhcCChhHHHHHH
Q 041458 423 CRKGKTYQAFQLL 435 (568)
Q Consensus 423 ~~~g~~~~A~~~~ 435 (568)
.+.++++.|....
T Consensus 293 ~~~~e~d~A~~tm 305 (449)
T 1b89_A 293 DKYEEYDNAIITM 305 (449)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HhhchHHHHHHHH
Confidence 9999999887743
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=6.1e-17 Score=152.98 Aligned_cols=265 Identities=13% Similarity=-0.000 Sum_probs=179.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041458 99 VQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGL 178 (568)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 178 (568)
..+..+...+...|++++|+.+|+.+.+... .+..++..+..++...|++++|.+.|+++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 3455666677777788888888877776542 256677777777777888888888887777652 34667777777778
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 041458 179 CMLGNLNQSLQFLDRLIQKGLVPNAFTYSFL--------------LE-AAYKERGVHAAMKLLDDIIAKGGKPNLVSYNV 243 (568)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (568)
...|++++|.+.++++.+.... +...+..+ .. .+...|++++|.+.++++.+.. +.+...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 8888888888888877765322 22233222 22 2556677778888887777663 235667777
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCC
Q 041458 244 LLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGK 323 (568)
Q Consensus 244 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (568)
+...+.+.|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 77777888888888888877766532 246677777777888888888888887776553 3456677777777888888
Q ss_pred hHHHHHHHHHHHHCCCCC-----------CcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 041458 324 TDHALKVLDEMVKGRFRP-----------SAASYNPIIARLCSEGKVDLVVKCLDQM 369 (568)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~~ 369 (568)
+++|.+.++++.+..... +...|..+..++.+.|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 888888887776543221 3456666777777777777777766543
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=8.9e-17 Score=151.86 Aligned_cols=279 Identities=11% Similarity=-0.030 Sum_probs=192.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHH
Q 041458 239 VSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSL 318 (568)
Q Consensus 239 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (568)
..+..+...+...|++++|..+|+++.+.... +...+..+..++...|++++|...++++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 44556666777777777777777777665322 55666667777777777777777777776553 34566677777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH-H--HHHhCCCHHH
Q 041458 319 AYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGL-A--MLCGVGKVQE 395 (568)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~ 395 (568)
...|++++|.+.++++.+.... +...+..+.... |+......+ . .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 7777777777777777665322 222222221000 000000000 1 1444566677
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041458 396 AFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEE 475 (568)
Q Consensus 396 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 475 (568)
|...++++....+. +...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+
T Consensus 157 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777776655433 56778888889999999999999999988763 33577888999999999999999999999887
Q ss_pred CCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 476 YDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-----------NETTYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 476 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
.... +...+..+...|...|++++|.+.++++.+..... +..+|..+..++...|++++|..++++.+
T Consensus 235 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 INPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5433 67889999999999999999999999998742111 36788899999999999999998887554
Q ss_pred H
Q 041458 545 L 545 (568)
Q Consensus 545 ~ 545 (568)
+
T Consensus 314 ~ 314 (327)
T 3cv0_A 314 E 314 (327)
T ss_dssp H
T ss_pred H
Confidence 3
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=4.6e-16 Score=143.42 Aligned_cols=261 Identities=15% Similarity=0.102 Sum_probs=151.6
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHH
Q 041458 247 GLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDH 326 (568)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 326 (568)
-....|++..|+..++........+.......+..+|...|++++|...++. . -+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHH
Confidence 3445566666666666554331111122334455666666666666654432 1 24455555666666666666666
Q ss_pred HHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhh
Q 041458 327 ALKVLDEMVKGRFRPS-AASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGN 405 (568)
Q Consensus 327 a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 405 (568)
|++.++++...+..|+ ...+..+...+...|++++|++.+++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------------------------------- 126 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------------------------------- 126 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------------------------------------
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------------------------------------
Confidence 6666666655443332 23333344555555555555555543
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 041458 406 KQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTY---SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDV 482 (568)
Q Consensus 406 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 482 (568)
+.+...+..++..+.+.|++++|.+.|+++.+. .|+.... ..++..+...|++++|..+|+++.+.. +.+.
T Consensus 127 ---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~ 200 (291)
T 3mkr_A 127 ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTL 200 (291)
T ss_dssp ---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCH
T ss_pred ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcH
Confidence 124455666666777777777777777777664 3443211 112233334477777777777777543 2366
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHcCCCCHHHHH
Q 041458 483 DNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELEL-SAEVLKELQLRQVVSESAVE 555 (568)
Q Consensus 483 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~ 555 (568)
..|+.+..++.+.|++++|.+.++++++.. +.+..++..++..+...|+.++ +.++++++.+.+|.++.+..
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 677777777777777777777777777642 3366677777777777777754 46777777777777665544
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.8e-15 Score=150.93 Aligned_cols=391 Identities=12% Similarity=-0.004 Sum_probs=245.4
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhC--------CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C
Q 041458 132 DASSYTYLVNCLCKKGNVGYAMQLVEKMEDY--------GYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK-----G 198 (568)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~ 198 (568)
....|+.|...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3457888999999999999999999887542 12335678999999999999999999999887652 1
Q ss_pred -CC-CCHhhHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH---HHhcCChHHHHHHHHHhhhCCCCC
Q 041458 199 -LV-PNAFTYSFLLEAAYKE--RGVHAAMKLLDDIIAKGGKPNLVSYNVLLTG---LCKEGRTEEAIRFFRDLPSKGFEP 271 (568)
Q Consensus 199 -~~-~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~~~~p 271 (568)
.. ....++.....++... +++++|...|++.++... .+...+..+..+ +...++.++|++.+++..+....
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 11 1345566555555554 468999999999888732 245555555444 34567888899999888765322
Q ss_pred ChhHHHHHHHHHHc----CCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHH
Q 041458 272 NVVSYNILLRSLCM----EGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYN 347 (568)
Q Consensus 272 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 347 (568)
+...+..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+..+. +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 45556555555444 467788999998887664 556778888999999999999999999998876422 444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 041458 348 PIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGK 427 (568)
Q Consensus 348 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 427 (568)
.+...|...+....+ ... ... .......+..++|...|+......+. +...+..+...+...|+
T Consensus 286 ~lg~~y~~~~~~~~~---------~~~-~~~-----~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMN---------LRE-NGM-----YGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHHH---------C------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhh---------HHH-HHH-----HHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhcc
Confidence 555554322111100 000 000 00011122356788888877765443 45668888999999999
Q ss_pred hhHHHHHHHHHHHCCCCCChh--hHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHH
Q 041458 428 TYQAFQLLYEMTKYGFTPDSY--TYSSLIR-GLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEV 504 (568)
Q Consensus 428 ~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 504 (568)
+++|++.|++..+....|... .+..+.. .....|+.++|+..|++..+.. |+..... +....+.++
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~ 418 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHH
Confidence 999999999998764333221 2233332 2356899999999999988753 3432222 223445566
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHH
Q 041458 505 FQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAV 554 (568)
Q Consensus 505 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 554 (568)
+++.++.+ +.+..+|..+..++...|++++|.+.+++.++.++..+.+.
T Consensus 419 ~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 419 AKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp HHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 66666642 55778999999999999999999999999999988866543
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=173.51 Aligned_cols=161 Identities=15% Similarity=0.197 Sum_probs=128.3
Q ss_pred HhhHHHHHHHHHhcCChhhHHHHHHHHHh---CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 041458 133 ASSYTYLVNCLCKKGNVGYAMQLVEKMED---YGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFL 209 (568)
Q Consensus 133 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 209 (568)
..+|++||++|++.|++++|.++|++|.+ .|+.||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC------hhHHHHHHHH
Q 041458 210 LEAAYKERG-VHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPN------VVSYNILLRS 282 (568)
Q Consensus 210 i~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~ 282 (568)
|.++++.|+ .+.|.++|++|.+.|+.||..+|+.++..+.+. .+++..+++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999987 578899999999999999999999888655443 444444444 2234433 4555666677
Q ss_pred HHcCC---------CHHHHHHHHHH
Q 041458 283 LCMEG---------RWEEANELLAE 298 (568)
Q Consensus 283 ~~~~g---------~~~~a~~~~~~ 298 (568)
|.+.+ ..++-.++|++
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHH
Confidence 77655 23555555554
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=3.2e-15 Score=149.04 Aligned_cols=411 Identities=11% Similarity=-0.058 Sum_probs=247.4
Q ss_pred ChHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC-----C--CCC-CHhhHHHHHHHHHhcCC
Q 041458 78 KLNDAFLQLERMVSK-GHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSS-----G--IIP-DASSYTYLVNCLCKKGN 148 (568)
Q Consensus 78 ~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~--~~~-~~~~~~~li~~~~~~g~ 148 (568)
.+......+..-++. +.......|+.|...+...|++++|++.|++..+. + ..| ...+|+.+..+|...|+
T Consensus 30 ~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~ 109 (472)
T 4g1t_A 30 SLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR 109 (472)
T ss_dssp CHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCC
Confidence 344444444333332 23334567899999999999999999999987652 1 122 35678999999999999
Q ss_pred hhhHHHHHHHHHhC-----C--CCCcHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH---HHc
Q 041458 149 VGYAMQLVEKMEDY-----G--YPTNTVTYNSLVRGLCML--GNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAA---YKE 216 (568)
Q Consensus 149 ~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---~~~ 216 (568)
+++|...+++..+. + ......++..+..++.+. +++++|.+.|++..+.... +...+..+..++ ...
T Consensus 110 ~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence 99999999987642 1 112345666666666554 5799999999999886422 555555555443 456
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHH
Q 041458 217 RGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCK----EGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEA 292 (568)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 292 (568)
++.++|++.+++.++.. +.+...+..+...+.. .|++++|.+++++...... .+...+..+...|...|++++|
T Consensus 189 ~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A 266 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKA 266 (472)
T ss_dssp CCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHH
Confidence 77889999999988763 3356666666555544 4678899999999877643 3677888999999999999999
Q ss_pred HHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 041458 293 NELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHR 372 (568)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 372 (568)
...+++..+.. +.+..++..+...|...+.... ... .... .......+..+.|...+++....
T Consensus 267 ~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~---------~~~-~~~~------~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 267 IELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVM---------NLR-ENGM------YGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhh---------hHH-HHHH------HHHHHHHhhHHHHHHHHHHHhhc
Confidence 99999998764 4466777777776643221110 000 0000 00111122345666666666665
Q ss_pred CCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCh--hhHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCChhh
Q 041458 373 RCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQ--EFYKYVIT-SLCRKGKTYQAFQLLYEMTKYGFTPDSYT 449 (568)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 449 (568)
.+............+...|++++|...|++.....+.+.. ..+..+.. .....|+.++|+..|.+..+. .|+...
T Consensus 330 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~ 407 (472)
T 4g1t_A 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSRE 407 (472)
T ss_dssp CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHH
T ss_pred CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHH
Confidence 5444444444466666677777777777766655433222 11222222 234678889999999888874 455432
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHHH
Q 041458 450 YSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKG-QMPNETTY 520 (568)
Q Consensus 450 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~ 520 (568)
.. +....+.++++...+..+. +..+|..+...|...|++++|++.|++.++.| ..|+...|
T Consensus 408 ~~---------~~~~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 408 KE---------KMKDKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HH---------HHHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HH---------HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 22 2223445556665554433 67889999999999999999999999998753 23444433
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=3.4e-16 Score=144.31 Aligned_cols=250 Identities=14% Similarity=0.115 Sum_probs=179.3
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHH
Q 041458 74 HRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAM 153 (568)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 153 (568)
...|++..|+..++.+....+.+.......+.++|...|+++.|+..++.. -.|+..++..+...+...++.++|+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 346888888887776544322222345556778888888888888766441 2456667777788888888888888
Q ss_pred HHHHHHHhCCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 041458 154 QLVEKMEDYGY-PTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAK 232 (568)
Q Consensus 154 ~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 232 (568)
+.++++...+. |.+...+..+...+...|++++|++.+++ ..+...+..+...+.+.|++++|.+.|+++.+.
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 88888877653 44566677777888888888888888876 346777888888888888888888888888776
Q ss_pred CCCCCHhhH---HHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHh
Q 041458 233 GGKPNLVSY---NVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIV 309 (568)
Q Consensus 233 ~~~~~~~~~---~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 309 (568)
. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..... +.+..
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~ 235 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPE 235 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 3 333211 22334444567888888888888776 33467778888888888888888888888877664 44677
Q ss_pred hHHHHHHHHHhcCChHH-HHHHHHHHHHC
Q 041458 310 TYNILIGSLAYHGKTDH-ALKVLDEMVKG 337 (568)
Q Consensus 310 ~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 337 (568)
++..++..+...|+.++ +.++++++.+.
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 78888888888888765 56777777765
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=2.5e-18 Score=174.40 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=110.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTK---YGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNA 487 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 487 (568)
-..+|+++|.+|++.|++++|.++|.+|.+ .|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988764 47999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 041458 488 LLLGLCKSRRT-DLSLEVFQMMIEKGQMPNETTYTILVEGIAHQ 530 (568)
Q Consensus 488 li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 530 (568)
+|+++|+.|+. ++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 99999999985 78999999999999999999999988766553
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=5.9e-15 Score=145.27 Aligned_cols=342 Identities=12% Similarity=-0.004 Sum_probs=166.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh---hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 041458 104 LLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNV---GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM 180 (568)
Q Consensus 104 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 180 (568)
+...+.+.|++++|+++|+...+.| +...+..|...|...|+. ++|.+.|++..+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555666777777777777776654 333444455555556666 6777777776643 44455555554444
Q ss_pred cC-----ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 041458 181 LG-----NLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVH---AAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEG 252 (568)
Q Consensus 181 ~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 252 (568)
.+ +.++|.+.|++..+.|. ...+..+...|...+..+ .+.+.+......| +...+..+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 44 56677777777776542 225555555555544322 3334444443333 2344555555665555
Q ss_pred ChH----HHHHHHHHhhhCCCCCChhHHHHHHHHHHcCC---CHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhc----
Q 041458 253 RTE----EAIRFFRDLPSKGFEPNVVSYNILLRSLCMEG---RWEEANELLAEMDGGDRSPTIVTYNILIGSLAYH---- 321 (568)
Q Consensus 253 ~~~----~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 321 (568)
.++ ++..+++..... +...+..|...|...| +.++|.+.|++..+.| .++...+..+...|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred CcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 333 333333333322 3336666666666666 6677777777766665 34444445555555443
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHH-H--HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHH
Q 041458 322 GKTDHALKVLDEMVKGRFRPSAASYNPIIAR-L--CSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFA 398 (568)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 398 (568)
++.++|.++|++.. . -+...+..+... + ...+++++|...|++..+.+
T Consensus 231 ~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g------------------------- 281 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD------------------------- 281 (452)
T ss_dssp CCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-------------------------
T ss_pred CCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-------------------------
Confidence 56667777776665 2 244445555444 2 34556666666666655443
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHH
Q 041458 399 IIQSLGNKQNSSPQEFYKYVITSLCRKG-----KTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM----EGLIEEALEI 469 (568)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 469 (568)
+...+..+...|. .| +.++|++.|++.. . -+...+..|...|.. ..++++|.++
T Consensus 282 ------------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 282 ------------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp ------------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred ------------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 2223333333333 23 5555555555444 1 133444444444443 2356666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHHCC
Q 041458 470 FVVMEEYDYKPDVDNFNALLLGLCK----SRRTDLSLEVFQMMIEKG 512 (568)
Q Consensus 470 ~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 512 (568)
|++..+.| +......|...|.. ..+.++|..+++...+.|
T Consensus 345 ~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 345 LLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 66665544 23344444444442 335666666666666554
No 38
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.67 E-value=1.8e-12 Score=131.82 Aligned_cols=461 Identities=10% Similarity=0.012 Sum_probs=297.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---hhhHHH
Q 041458 78 KLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGN---VGYAMQ 154 (568)
Q Consensus 78 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~ 154 (568)
...+.+..|++.+..+ +.|...|..++..+.+.+.++.+..+|+.+...- +.....|...+..-.+.++ ++.+.+
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455666777776664 4699999999999999999999999999999863 4467789988988888888 999999
Q ss_pred HHHHHHhCC-CCCcHHHHHHHHHHHHhcCCh--------HHHHHHHHHHHH-CCC-CCC-HhhHHHHHHHHH--------
Q 041458 155 LVEKMEDYG-YPTNTVTYNSLVRGLCMLGNL--------NQSLQFLDRLIQ-KGL-VPN-AFTYSFLLEAAY-------- 214 (568)
Q Consensus 155 ~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~~~-~~~~~~li~~~~-------- 214 (568)
+|++..... .+|++..|...+....+.++. +.+.++|+..+. .|. .++ ...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998763 147888999988877766654 334577777654 365 453 467777776543
Q ss_pred -HcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHH
Q 041458 215 -KERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEAN 293 (568)
Q Consensus 215 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 293 (568)
..++++.+.++|++.+......-..+|......--..+. ..+.+++.+. ..+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar 262 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNAR 262 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHH
Confidence 234577888888888753211112334333222111111 1122221110 01222233
Q ss_pred HHHHHhc------cCCCC-----------c--C------HhhHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCC
Q 041458 294 ELLAEMD------GGDRS-----------P--T------IVTYNILIGSLAYHG-------KTDHALKVLDEMVKGRFRP 341 (568)
Q Consensus 294 ~~~~~~~------~~~~~-----------~--~------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~ 341 (568)
..+.++. ...++ | + ...|...+..--..+ ..+.+..+|++.+... +-
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~ 341 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CF 341 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TT
T ss_pred HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CC
Confidence 3332211 00000 1 0 123444443322222 1234556677776643 23
Q ss_pred CcccHHHHHHHHHhcCCHHHHH-HHHHHHhhCCCCCChhhHH-HHHHHHhCCCHHHHHHHHHHHhhCCC---------CC
Q 041458 342 SAASYNPIIARLCSEGKVDLVV-KCLDQMFHRRCKPNEGTYN-GLAMLCGVGKVQEAFAIIQSLGNKQN---------SS 410 (568)
Q Consensus 342 ~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~---------~~ 410 (568)
....|...+..+...|+.++|. +++++.....+ .+...+. .+....+.|+++.|..+|+.+..... .|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 6667777777777788888886 88888876533 2232232 36666778888888888888765310 12
Q ss_pred ------------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCC
Q 041458 411 ------------PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCME-GLIEEALEIFVVMEEYD 477 (568)
Q Consensus 411 ------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~ 477 (568)
....|...+....+.|..+.|..+|.+..+.-..+....|...+..-.+. ++.+.|.++|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 12368888888888899999999999998751112334444333333344 4589999999998865
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHH
Q 041458 478 YKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP--NETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVE 555 (568)
Q Consensus 478 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 555 (568)
.+-+...|...++.....|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.+.++.+++.+..+.++ .+.
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~ 578 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLE 578 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHH
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHH
Confidence 23366777888888888999999999999999863222 346788888888889999999999999999998764 446
Q ss_pred HHHHhhhhcCC
Q 041458 556 RLVMQYDFEGI 566 (568)
Q Consensus 556 ~l~~~~~~~g~ 566 (568)
.++..|...+.
T Consensus 579 ~f~~ry~~~~~ 589 (679)
T 4e6h_A 579 EFTNKYKVLDV 589 (679)
T ss_dssp HHHHHTCBTTB
T ss_pred HHHHHhcCCcc
Confidence 66777665544
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.3e-14 Score=131.64 Aligned_cols=239 Identities=10% Similarity=0.028 Sum_probs=157.3
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CC----cccH
Q 041458 273 VVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFR--PS----AASY 346 (568)
Q Consensus 273 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~ 346 (568)
...+..+...+...|++++|...+++..+.. .+..++..+...+...|++++|.+.+++..+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3455666666777777777777777666554 55666666667777777777777777666553211 01 3455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 041458 347 NPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKG 426 (568)
Q Consensus 347 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 426 (568)
..+...+...|++++|...++++.... +. ...+...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------------------------~~---------~~~~~~~~ 119 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH----------------------------------RT---------ADILTKLR 119 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------CC---------HHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC----------------------------------ch---------hHHHHHHh
Confidence 555556666666666666666555432 11 12345556
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHH
Q 041458 427 KTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQ 506 (568)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 506 (568)
++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...|..+...|...|++++|.+.++
T Consensus 120 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 6777777777776642 123456777777778888888888888877765433 66777788888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCHHHHHHHHH
Q 041458 507 MMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQ------VVSESAVERLVM 559 (568)
Q Consensus 507 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~ 559 (568)
++.+.. +.+...|..+..++...|++++|.+.++++.+.. +.+......+.+
T Consensus 198 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 198 KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 887752 3457777778888888888888888888888777 655555554443
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.9e-14 Score=127.87 Aligned_cols=225 Identities=12% Similarity=0.101 Sum_probs=149.7
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCc----HHHH
Q 041458 98 VVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGY--PTN----TVTY 171 (568)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~ 171 (568)
...+..+...+...|++++|+..|+.+.+.. .+..++..+..++...|++++|++.+++..+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456677777888888888888888887766 5677777888888888888888888877765321 011 4677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 041458 172 NSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKE 251 (568)
Q Consensus 172 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 251 (568)
..+...+...|++++|.+.|++..+. .|+. ..+.+.|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 77777788888888888888877764 3332 33555566777777777766652 22445566666667777
Q ss_pred CChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHH
Q 041458 252 GRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVL 331 (568)
Q Consensus 252 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (568)
|++++|...|++..+.... +...+..+..+|...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7777777777776654322 45566666666666777777777666665543 334556666666666666666666666
Q ss_pred HHHHH
Q 041458 332 DEMVK 336 (568)
Q Consensus 332 ~~~~~ 336 (568)
++..+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=3e-14 Score=140.23 Aligned_cols=375 Identities=13% Similarity=0.022 Sum_probs=229.4
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKM---KKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKG- 147 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 147 (568)
.+.+.|++++|...|++..+.| +...+..+...|...|+. ++|+++|++..+. ++..+..+...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 3457899999999999988765 334555666677778888 8999999998864 5666777777555555
Q ss_pred ----ChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH
Q 041458 148 ----NVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLN---QSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVH 220 (568)
Q Consensus 148 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 220 (568)
++++|.+.|++..+.|. ...+..|...|...+..+ ++.+.+......| +...+..+...|...+.++
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 77899999999998763 347778888888766543 4555555555444 4566777778888877555
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---ChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcC----CCHHHHH
Q 041458 221 AAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEG---RTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCME----GRWEEAN 293 (568)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~ 293 (568)
++......+...-...+...+..+...|.+.| +.++|++.|++..+.|.. +...+..+...|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 44444333333222234458888999999999 999999999999888643 555556677777654 7999999
Q ss_pred HHHHHhccCCCCcCHhhHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-----CHHHHHHH
Q 041458 294 ELLAEMDGGDRSPTIVTYNILIGS-L--AYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEG-----KVDLVVKC 365 (568)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~ 365 (568)
.+|++.. .| +...+..+... + ...++.++|.+.|++..+.| +...+..+...|. .| ++++|...
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 9999988 33 56677777777 4 46899999999999999876 5566666666665 44 67777777
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHC
Q 041458 366 LDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCR----KGKTYQAFQLLYEMTKY 441 (568)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~ 441 (568)
|++.. .+ +...+..+...|.. ..+.++|...|++..+.
T Consensus 310 ~~~Aa-~g-------------------------------------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 310 FEKAV-GR-------------------------------------EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHTTT-TT-------------------------------------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHh-CC-------------------------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 76655 21 22333333433433 23677777777777665
Q ss_pred CCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 442 GFTPDSYTYSSLIRGLCM----EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 442 ~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
|. ......|...|.. ..+.++|..+|+...+.|.. +.......+......++..+|.++.++..+
T Consensus 352 g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 352 GQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred Ch---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 42 3344555555543 45777888888777766533 222222222222223345556666555443
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=9.4e-14 Score=127.24 Aligned_cols=245 Identities=14% Similarity=0.086 Sum_probs=148.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh---hHHHHHHHHhC
Q 041458 314 LIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEG---TYNGLAMLCGV 390 (568)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 390 (568)
....+...|++++|+..|+++.+.... +...+..+...+...|++++|+..++++......++.. .+.....+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 334444444444444444444443211 22344444444444444444444444444422111110 11123344444
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 041458 391 GKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIF 470 (568)
Q Consensus 391 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 470 (568)
|++++|...|++..+..+. +...|..+...+...|++++|++.+++..+.. +.+...+..+...+...+++++|.+.|
T Consensus 88 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554443332 44567788888888888888888888887652 224566666663445556999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCChhHHHHHH
Q 041458 471 VVMEEYDYKPDVDNFNALLLGLCKSRR---TDLSLEVFQMMIEKG-QMPN------ETTYTILVEGIAHQDELELSAEVL 540 (568)
Q Consensus 471 ~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~------~~~~~~ll~~~~~~g~~~~a~~~~ 540 (568)
+++.+.... +...+..+...+...|+ .++|...++++.+.. -.|+ ..+|..+...|...|++++|.+++
T Consensus 166 ~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 166 VKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 988875433 56777778888888887 888888888887631 1233 257777888889999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHhhh
Q 041458 541 KELQLRQVVSESAVERLVMQYD 562 (568)
Q Consensus 541 ~~~~~~~~~~~~~~~~l~~~~~ 562 (568)
+++++.++.++.+...+.....
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC----
T ss_pred HHHHhcCccHHHHHHHhhhhhc
Confidence 9999999998888777655443
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=3.8e-14 Score=124.74 Aligned_cols=198 Identities=17% Similarity=0.070 Sum_probs=120.0
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHH
Q 041458 96 PDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLV 175 (568)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 175 (568)
++...+..+...+.+.|++++|+..|+.+.+..+ .+...+..+..++.+.|++++|+..|++..+.. |.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 4556667777777777777778777777776642 256677777777777777777777777777653 34566777777
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 041458 176 RGLCML-----------GNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVL 244 (568)
Q Consensus 176 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (568)
.++.+. |++++|...|++..+... .+...+..+...+...|++++|...|++.++.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 666666666666665432 245556666666666666666666666666654 455666666
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 041458 245 LTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 245 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 299 (568)
..+|...|++++|+..|++..+.... +...+..+...+...|++++|...+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666666666554221 4455556666666666666666666554
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=5.8e-14 Score=123.52 Aligned_cols=197 Identities=17% Similarity=0.044 Sum_probs=103.6
Q ss_pred CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 041458 131 PDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLL 210 (568)
Q Consensus 131 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 210 (568)
++...+..+...+.+.|++++|+..|++..+.. |.+...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 345556666666666677777777776666542 3456666666666666677777776666666553 22455566666
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHH
Q 041458 211 EAAYKE-----------RGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNIL 279 (568)
Q Consensus 211 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 279 (568)
..+... |++++|...|++.++.. +.+...+..+..++...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666665 55555555555555542 1234445555555555555555555555555443 344555555
Q ss_pred HHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 041458 280 LRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDE 333 (568)
Q Consensus 280 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (568)
..+|...|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.|++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555555555554432 23444455555555555555555555544
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=1.6e-12 Score=119.05 Aligned_cols=224 Identities=13% Similarity=-0.031 Sum_probs=159.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCcHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK----KGNVGYAMQLVEKMEDYGYPTNTVTYN 172 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (568)
+..++..+...+...|++++|++.|++..+. .+..++..+...|.. .+++++|.+.|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5566777777777888888888888887773 255667777777777 788888888888877764 667777
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 041458 173 SLVRGLCM----LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYK----ERGVHAAMKLLDDIIAKGGKPNLVSYNVL 244 (568)
Q Consensus 173 ~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (568)
.+...|.. .+++++|.+.|++..+.+ +...+..+...+.. .+++++|.+.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 788888888888777764 66677777777777 777777777777777764 45556666
Q ss_pred HHHHHh----cCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHc----CCCHHHHHHHHHHhccCCCCcCHhhHHHHHH
Q 041458 245 LTGLCK----EGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCM----EGRWEEANELLAEMDGGDRSPTIVTYNILIG 316 (568)
Q Consensus 245 l~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (568)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 777777777777766653 44566666667777 777777777777766654 2555666666
Q ss_pred HHHh----cCChHHHHHHHHHHHHCC
Q 041458 317 SLAY----HGKTDHALKVLDEMVKGR 338 (568)
Q Consensus 317 ~~~~----~g~~~~a~~~~~~~~~~~ 338 (568)
.|.+ .++.++|.+.|++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 677777777777666543
No 46
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=8.3e-12 Score=126.92 Aligned_cols=426 Identities=10% Similarity=0.021 Sum_probs=265.8
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCh
Q 041458 74 HRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANK---MKKAIKVMEMMVSSGI-IPDASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 74 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~ 149 (568)
.+.+.+..+..+|++++.. .+.....|...+..-.+.++ ++.+..+|++...... .|++..|...+....+.++.
T Consensus 77 ~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~ 155 (679)
T 4e6h_A 77 VSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDI 155 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCS
T ss_pred HhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccc
Confidence 4568999999999999987 56688889999998888898 9999999999998641 37888999988877666654
Q ss_pred --------hhHHHHHHHHHh-CCC-CC-cHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 041458 150 --------GYAMQLVEKMED-YGY-PT-NTVTYNSLVRGLCM---------LGNLNQSLQFLDRLIQKGLVPNAFTYSFL 209 (568)
Q Consensus 150 --------~~a~~~~~~~~~-~~~-~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 209 (568)
+...++|+.... .|. .+ +...|...+..... .++.+.+..+|++.+......-..+|...
T Consensus 156 ~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y 235 (679)
T 4e6h_A 156 ITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRY 235 (679)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 334578887654 465 44 45788888876543 34567889999998853222122334332
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh------CCCC-----------C-
Q 041458 210 LEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPS------KGFE-----------P- 271 (568)
Q Consensus 210 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~~~~-----------p- 271 (568)
...-...+. ..+.+++.+.. .+++.|...+.++.. ..++ |
T Consensus 236 ~~fe~~~~~-~~a~~~~~e~~---------------------~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~ 293 (679)
T 4e6h_A 236 TQWEQDVNQ-LTARRHIGELS---------------------AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPK 293 (679)
T ss_dssp HHHHHHHCT-TTHHHHHHHHH---------------------HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCC
T ss_pred HHHHHhcCc-chHHHHHHHhh---------------------HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCC
Confidence 222111111 11222221110 122222333322110 0000 1
Q ss_pred -C------hhHHHHHHHHHHcCC-------CHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHH-HHHHHHHH
Q 041458 272 -N------VVSYNILLRSLCMEG-------RWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHAL-KVLDEMVK 336 (568)
Q Consensus 272 -~------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~ 336 (568)
+ ...|...+..--..+ ..+.+..+|++.... ++.+...|...+..+...|+.++|. ++|++...
T Consensus 294 ~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~ 372 (679)
T 4e6h_A 294 PNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 372 (679)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 0 123444443322222 123455667776654 2456778888888888888888886 88888876
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---------CCC------------hhhHHH-HHHHHhCCCHH
Q 041458 337 GRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRC---------KPN------------EGTYNG-LAMLCGVGKVQ 394 (568)
Q Consensus 337 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~-~~~~~~~~~~~ 394 (568)
.. +.+...|-..+...-+.|+++.|.++|++++.... .|. ...|.. +....+.|..+
T Consensus 373 ~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~ 451 (679)
T 4e6h_A 373 CI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLA 451 (679)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred hC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHH
Confidence 42 33555566677777788888888888888876410 121 112333 44445568888
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041458 395 EAFAIIQSLGNKQNSSPQEFYKYVITSLCRK-GKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVM 473 (568)
Q Consensus 395 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 473 (568)
.|..+|....+..+......|...+..-.+. ++.+.|.++|+..++. ..-+...|...+......|+.+.|..+|++.
T Consensus 452 ~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lfera 530 (679)
T 4e6h_A 452 ASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESS 530 (679)
T ss_dssp HHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999998887651111223343333333343 4588999999988875 3335566677788777889999999999988
Q ss_pred HhCCCCC--ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041458 474 EEYDYKP--DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI 527 (568)
Q Consensus 474 ~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 527 (568)
......+ ....|...+..-.+.|+.+.+.++.+++.+. .|+......+++-|
T Consensus 531 l~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 531 IDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp TTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 8654321 3467888888888889999999999999885 45444444444444
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=5.7e-14 Score=128.86 Aligned_cols=249 Identities=12% Similarity=-0.005 Sum_probs=168.7
Q ss_pred hhccCChHHHHHHHHHHHhCCC---CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 041458 73 RHRDHKLNDAFLQLERMVSKGH---KPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 149 (568)
....|++++|+..|+++++... +.+...+..+...+...|++++|+..|+.+.+... .+..+|..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCH
Confidence 3457899999999999988632 22466788888999999999999999999888653 3678888888899999999
Q ss_pred hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041458 150 GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDI 229 (568)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 229 (568)
++|++.|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+. .|+.......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999888753 346778888888888999999999999888875 344444444445556667888888888777
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC---ChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCc
Q 041458 230 IAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEP---NVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSP 306 (568)
Q Consensus 230 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 306 (568)
.... +++...+. ++..+...++.++|.+.++......... +...+..+...|...|++++|...|++..... |
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 6652 22333333 5556666777777777777765542110 13455666666666666666666666665542 2
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHH
Q 041458 307 TIVTYNILIGSLAYHGKTDHALKVL 331 (568)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (568)
+. +.....++...|++++|++.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 11 222233444555555555443
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=1.1e-13 Score=131.91 Aligned_cols=248 Identities=9% Similarity=0.020 Sum_probs=160.3
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 041458 274 VSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGK-TDHALKVLDEMVKGRFRPSAASYNPIIAR 352 (568)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 352 (568)
..|..+...+.+.|++++|+..++++.... +-+...|+.+..++...|+ +++|+..|+++++.... +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 345555556666666666666666665543 3345566666666666664 66666666666654432 44555556666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 041458 353 LCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAF 432 (568)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 432 (568)
+...|++++|+..+++++... +. +...|..+..++.+.|++++|+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld----------------------------------P~-~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD----------------------------------AK-NYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC----------------------------------TT-CHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHccCHHHHHHHHHHHHHhC----------------------------------cc-CHHHHHHHHHHHHHcCChHHHH
Confidence 666666666666666555442 22 5566777777777788888888
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHH-----HHHHHHHHhCCCCCChhhHHHHHHHHHccC--ChHHHHHH
Q 041458 433 QLLYEMTKYGFTPDSYTYSSLIRGLCM-EGLIEEA-----LEIFVVMEEYDYKPDVDNFNALLLGLCKSR--RTDLSLEV 504 (568)
Q Consensus 433 ~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~ 504 (568)
..++++++.... +...|+.+..++.. .|..++| ++.+++..+.... +...|..+...+...| ++++|.+.
T Consensus 221 ~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 221 QYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHH
Confidence 888887775322 56677777777777 5554666 4777777765444 5667777777777777 57788888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcC--------C-hhHHHHHHHHH-HHcCCCCHHHHHHHHHhhh
Q 041458 505 FQMMIEKGQMPNETTYTILVEGIAHQD--------E-LELSAEVLKEL-QLRQVVSESAVERLVMQYD 562 (568)
Q Consensus 505 ~~~m~~~g~~p~~~~~~~ll~~~~~~g--------~-~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~ 562 (568)
++++ +. .+.+...+..+...|.+.| + .++|.++++++ .+.++........+...+.
T Consensus 299 ~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 299 LLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 8776 32 3445677777777777753 2 47788888888 7777776666665555443
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=2e-12 Score=118.47 Aligned_cols=224 Identities=10% Similarity=-0.037 Sum_probs=188.3
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhhHH
Q 041458 132 DASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM----LGNLNQSLQFLDRLIQKGLVPNAFTYS 207 (568)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~ 207 (568)
+..++..+...+...|++++|.+.|++..+. .+..++..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667788888889999999999999998884 366788888999999 999999999999998875 778888
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCChhHHHHH
Q 041458 208 FLLEAAYK----ERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCK----EGRTEEAIRFFRDLPSKGFEPNVVSYNIL 279 (568)
Q Consensus 208 ~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 279 (568)
.+...+.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88888988 999999999999988874 67788888888888 899999999999988765 56677778
Q ss_pred HHHHHc----CCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 041458 280 LRSLCM----EGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY----HGKTDHALKVLDEMVKGRFRPSAASYNPIIA 351 (568)
Q Consensus 280 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 351 (568)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887 899999999999888765 56778888888888 899999999999988864 3566777777
Q ss_pred HHHh----cCCHHHHHHHHHHHhhCC
Q 041458 352 RLCS----EGKVDLVVKCLDQMFHRR 373 (568)
Q Consensus 352 ~~~~----~~~~~~a~~~~~~~~~~~ 373 (568)
.|.+ .+++++|.+.+++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8887 888899998888887764
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=4.3e-13 Score=121.27 Aligned_cols=210 Identities=14% Similarity=0.006 Sum_probs=150.4
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 041458 308 IVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAML 387 (568)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (568)
...+..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.++++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 45566667777777777777777777665432 244556666666666666666666666665432
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHH
Q 041458 388 CGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTP-DSYTYSSLIRGLCMEGLIEEA 466 (568)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 466 (568)
+ .+...+..+...+...|++++|.+.++++.+.+..| +...+..+...+...|++++|
T Consensus 102 --------------------~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 102 --------------------S-RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp --------------------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------c-CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 1 144556667777778888888888888877632334 355677778888888888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 467 LEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 467 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
.++++++.+.... +...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|+.++|.++++++.+.
T Consensus 161 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888888765433 5777888888888888888888888888875 2456777778888888888888888888888888
Q ss_pred CCCCHHHHH
Q 041458 547 QVVSESAVE 555 (568)
Q Consensus 547 ~~~~~~~~~ 555 (568)
.+.++....
T Consensus 239 ~p~~~~~~~ 247 (252)
T 2ho1_A 239 YPGSLEYQE 247 (252)
T ss_dssp CTTSHHHHH
T ss_pred CCCCHHHHH
Confidence 887766543
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=9.6e-14 Score=127.36 Aligned_cols=247 Identities=13% Similarity=-0.016 Sum_probs=188.0
Q ss_pred hcCChhHHHHHHHHHHHCCCC---CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHH
Q 041458 110 KANKMKKAIKVMEMMVSSGII---PDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQ 186 (568)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 186 (568)
..|++++|+..|+.+.+.... .+..++..+...+...|++++|.+.|+++.+.. +.+..+|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457899999999999886321 145678888899999999999999999998763 4578899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041458 187 SLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPS 266 (568)
Q Consensus 187 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 266 (568)
|.+.|+++.+.. +.+...+..+...+.+.|++++|...|+++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999998863 3367888899999999999999999999998863 3444444455566777999999999987776
Q ss_pred CCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCC---cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 041458 267 KGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRS---PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSA 343 (568)
Q Consensus 267 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 343 (568)
.. +++...+ .++..+...++.++|...+++....... .+..++..+...|.+.|++++|...|++..+.. |+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 52 2344444 4777788888889999999988765321 125678888889999999999999999988753 322
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHH
Q 041458 344 ASYNPIIARLCSEGKVDLVVKCL 366 (568)
Q Consensus 344 ~~~~~li~~~~~~~~~~~a~~~~ 366 (568)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 333455667777777776655
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1.4e-13 Score=123.68 Aligned_cols=216 Identities=14% Similarity=0.054 Sum_probs=144.2
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 041458 308 IVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAML 387 (568)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (568)
...+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|...++++.+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---------------- 85 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALE---------------- 85 (243)
T ss_dssp -------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------
Confidence 34444555555555666666666655554322 1344444445555555555555555554443
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 041458 388 CGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEAL 467 (568)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 467 (568)
..+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 86 ------------------~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 86 ------------------LDS-SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp ------------------HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred ------------------cCC-cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 322 245667777888888899999999998888753 335677888888899999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 468 EIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 468 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
++++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+..
T Consensus 146 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 146 PYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999988865433 67788889999999999999999999988752 4467888889999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhh
Q 041458 548 VVSESAVERLVMQYD 562 (568)
Q Consensus 548 ~~~~~~~~~l~~~~~ 562 (568)
+.+......+.....
T Consensus 224 p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 224 PDHMLALHAKKLLGH 238 (243)
T ss_dssp TTCHHHHHHHTC---
T ss_pred cchHHHHHHHHHHHh
Confidence 988887776655443
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=6.9e-13 Score=121.41 Aligned_cols=247 Identities=11% Similarity=0.050 Sum_probs=133.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcC--HhhHHHHHHH
Q 041458 240 SYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPT--IVTYNILIGS 317 (568)
Q Consensus 240 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 317 (568)
.+......+...|++++|+..|++..+.... +...+..+..+|...|++++|...+++.......++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3344455556666666666666666554221 333555556666666666666666666555221111 1225555556
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHH
Q 041458 318 LAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAF 397 (568)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 397 (568)
+...|++++|.+.|++..+.... +...+..+...+...|++++|+..+++..+.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------------- 137 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP------------------------- 137 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-------------------------
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-------------------------
Confidence 66666666666666665554321 3345555555555555555555555555443
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 041458 398 AIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGL---IEEALEIFVVME 474 (568)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~ 474 (568)
.+. +...|..+...+...+++++|.+.|+++.+.. +.+...+..+...+...|+ +++|...++++.
T Consensus 138 ---------~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 138 ---------TTT-DPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp ---------SCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred ---------CCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 221 33444444423333347777777777766642 1234555666666666666 666666666665
Q ss_pred hCC-CCCC------hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041458 475 EYD-YKPD------VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVE 525 (568)
Q Consensus 475 ~~~-~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 525 (568)
+.. -.|+ ...|..+...|...|++++|.+.++++.+.. +.+...+..+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~ 263 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKM 263 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence 321 1122 2456667777777888888888888877742 224444444433
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=1e-12 Score=116.28 Aligned_cols=211 Identities=9% Similarity=-0.084 Sum_probs=150.0
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 041458 307 TIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAM 386 (568)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 386 (568)
+...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++....+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------ 73 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP------------ 73 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------------
Confidence 455666777777777777777777777766432 2445566666666667777766666666654321
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHH
Q 041458 387 LCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRK-GKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGLIE 464 (568)
Q Consensus 387 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 464 (568)
.+...+..+...+... |++++|...++++.+.+..|+ ...+..+...+...|+++
T Consensus 74 -----------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 74 -----------------------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp -----------------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred -----------------------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 1345566677777788 888888888888776322333 456777888888888888
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 465 EALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQM-PNETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 465 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
+|.+.++++.+.... +...+..+...+...|++++|.+.++++.+.. + .+...+..+...+...|+.+.+..+++.+
T Consensus 131 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 888888888765433 57778888888888888888888888887753 3 46677777777778888888888888888
Q ss_pred HHcCCCCHHHHH
Q 041458 544 QLRQVVSESAVE 555 (568)
Q Consensus 544 ~~~~~~~~~~~~ 555 (568)
.+..+.++....
T Consensus 209 ~~~~p~~~~~~~ 220 (225)
T 2vq2_A 209 QANFPYSEELQT 220 (225)
T ss_dssp HHHCTTCHHHHH
T ss_pred HHhCCCCHHHHH
Confidence 888877766544
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=7.7e-13 Score=126.04 Aligned_cols=249 Identities=11% Similarity=0.088 Sum_probs=198.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-hhhHHHHHHHHHhCCCCCcHHHHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGN-VGYAMQLVEKMEDYGYPTNTVTYNSLV 175 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li 175 (568)
+...|..+...+.+.|++++|++.++.+++... -+..+|+.+..++...|+ +++|++.|+++.+.. +.+..+|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 355677788888899999999999999998753 267889999999999996 999999999998864 45788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-cCCh
Q 041458 176 RGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCK-EGRT 254 (568)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~ 254 (568)
.++...|++++|+..|+++++... -+...|..+..++.+.|++++|+..|+++++... .+...|+.+..++.+ .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999998753 3788899999999999999999999999998743 377889999988888 6665
Q ss_pred HHH-----HHHHHHhhhCCCCCChhHHHHHHHHHHcCC--CHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcC-----
Q 041458 255 EEA-----IRFFRDLPSKGFEPNVVSYNILLRSLCMEG--RWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHG----- 322 (568)
Q Consensus 255 ~~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 322 (568)
++| +..|++....... +...|+.+...+...| ++++|.+.+.++ +.. +.+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccccc
Confidence 777 5888888776333 5678888888888888 689999999888 332 556778888888888864
Q ss_pred ----ChHHHHHHHHHH-HHCCCCCCcccHHHHHHHH
Q 041458 323 ----KTDHALKVLDEM-VKGRFRPSAASYNPIIARL 353 (568)
Q Consensus 323 ----~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~ 353 (568)
..++|+++|+++ .+.+. .....|..+...+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l 363 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSL 363 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHH
Confidence 258899999998 55432 1334455454443
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=1.4e-12 Score=117.81 Aligned_cols=201 Identities=12% Similarity=-0.004 Sum_probs=144.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 041458 98 VVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRG 177 (568)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 177 (568)
...+..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567778888888999999999999888764 2366778888888888888888888888887653 3467778888888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 178 LCMLGNLNQSLQFLDRLIQKGLVP-NAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
|...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887632233 44566667777777777777777777777653 2345666667777777777777
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccC
Q 041458 257 AIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGG 302 (568)
Q Consensus 257 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 302 (568)
|...++++.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777665422 34555666666667777777777777766554
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=2.1e-12 Score=114.27 Aligned_cols=202 Identities=13% Similarity=0.049 Sum_probs=125.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
+...+..+...+...|++++|++.|+.+.+... .+...+..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 455566677777777777777777777766532 245666677777777777777777777776542 335666677777
Q ss_pred HHHhc-CChHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 041458 177 GLCML-GNLNQSLQFLDRLIQKGLVP-NAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRT 254 (568)
Q Consensus 177 ~~~~~-g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 254 (568)
.+... |++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 77777 77777777777776522222 24555666666666666777766666666552 22455566666666666666
Q ss_pred HHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 041458 255 EEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDG 301 (568)
Q Consensus 255 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 301 (568)
++|...++++.+.....+...+..+...+...|+.+++..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666666655542212444555555555666666666666665543
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=3.2e-13 Score=121.33 Aligned_cols=197 Identities=13% Similarity=0.134 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 041458 100 QATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLC 179 (568)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 179 (568)
.|..+...+...|++++|...|+++.+... .+...+..+...+...|++++|++.|+++.+.. +.+..++..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 344444444555555555555555544321 234444445555555555555555555544431 224444555555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 041458 180 MLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIR 259 (568)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 259 (568)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554432 1234444444444555555555555555544431 1234444444445555555555555
Q ss_pred HHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 041458 260 FFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDG 301 (568)
Q Consensus 260 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 301 (568)
.|+++.+... .+..++..+..+|...|++++|...++++.+
T Consensus 181 ~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 181 QFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 5554443311 1333444444444444555555444444443
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=1.9e-11 Score=113.86 Aligned_cols=187 Identities=12% Similarity=-0.015 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhhC-CCCCChhhHH-HHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041458 360 DLVVKCLDQMFHR-RCKPNEGTYN-GLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYE 437 (568)
Q Consensus 360 ~~a~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 437 (568)
++|..+|++.+.. .+. +...+. .+..+...|++++|..+|+++.+..+......|..++..+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5555555555542 211 111222 2444455555555666665555533221112677777777778888888888888
Q ss_pred HHHCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCC-CCC
Q 041458 438 MTKYGFTPDSYTYSSLIRGLC-MEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKG-QMP 515 (568)
Q Consensus 438 ~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p 515 (568)
..+... ++...|...+.... ..|++++|.++|+...+..+. +...|..++..+.+.|++++|..+|++++... +.|
T Consensus 160 a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 776532 23444443333322 268888888888887754333 66778888888888888888888888888752 344
Q ss_pred --CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 516 --NETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 516 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
....|..++....+.|+.+.|..+++++.+..+.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 4567777777778888888888888888887776
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=4.7e-13 Score=130.35 Aligned_cols=281 Identities=12% Similarity=0.062 Sum_probs=163.3
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC----hhHHHHHHHHHHcCCCHHHHHHHHHHhccC----CCC-c
Q 041458 236 PNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPN----VVSYNILLRSLCMEGRWEEANELLAEMDGG----DRS-P 306 (568)
Q Consensus 236 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~ 306 (568)
.....+......+...|++++|...|+++.+.... + ...+..+...|...|++++|...+++.... +.. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 45556677788889999999999999998876322 2 356778888899999999999999886432 211 2
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCC--------------------HHH
Q 041458 307 TIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFR-PS----AASYNPIIARLCSEGK--------------------VDL 361 (568)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~--------------------~~~ 361 (568)
...++..+...|...|++++|...+++..+.... ++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2456777888889999999999998887753111 11 2356666777777777 666
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 041458 362 VVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKY 441 (568)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 441 (568)
|...+.+.... +.... ........+..+...+...|++++|...+++..+.
T Consensus 166 A~~~~~~al~~---------------------------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 166 AVDFYEENLSL---------------------------VTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHHHHHH---------------------------HHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------------------HHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666655432 11100 00001123444555555556666666555554432
Q ss_pred CC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 442 GF-TPD----SYTYSSLIRGLCMEGLIEEALEIFVVMEEY----DYKP-DVDNFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 442 ~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
.. .++ ..++..+...+...|++++|...+++..+. +..+ ...++..+...|...|++++|.+.++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 10 011 124555555556666666666666555421 1000 0334555555566666666666666555442
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 512 ----GQMP-NETTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 512 ----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
+..+ ...++..+...+...|++++|.+++++..+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1000 1344555555566666666666666655443
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=9.1e-13 Score=128.66 Aligned_cols=272 Identities=14% Similarity=0.079 Sum_probs=189.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCChhhHHHHHHHHHhC----C-CCCcHHH
Q 041458 100 QATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDA----SSYTYLVNCLCKKGNVGYAMQLVEKMEDY----G-YPTNTVT 170 (568)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~ 170 (568)
.+..+...+...|++++|+..|+++.+.+.. +. .++..+...|...|++++|.+.+++..+. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445667778889999999999988876422 33 46777888888899999999988877642 1 1224567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCCHhhHHHHHHHHHHcCC-----------------HHHHHHHHHH
Q 041458 171 YNSLVRGLCMLGNLNQSLQFLDRLIQK----G-LVPNAFTYSFLLEAAYKERG-----------------VHAAMKLLDD 228 (568)
Q Consensus 171 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~ 228 (568)
+..+...|...|++++|.+.+++..+. + ......++..+...+...|+ +++|.+.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 788888889999999999988887653 1 11134467777788888888 8888888877
Q ss_pred HHHc----CC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CC----hhHHHHHHHHHHcCCCHHHHHHHHHH
Q 041458 229 IIAK----GG-KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFE-PN----VVSYNILLRSLCMEGRWEEANELLAE 298 (568)
Q Consensus 229 ~~~~----~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 298 (568)
..+. +. ......+..+...|...|++++|...+++..+.... ++ ...+..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6543 11 112346777788888899999999888887653111 11 23677788888888999988888887
Q ss_pred hccCCC-----CcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 041458 299 MDGGDR-----SPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF-----RPSAASYNPIIARLCSEGKVDLVVKCLDQ 368 (568)
Q Consensus 299 ~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 368 (568)
...... .....++..+...|...|++++|...+++..+... .....++..+...|.+.|++++|...+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 654310 01245677788888888888888888887765311 11123566667777788888888887777
Q ss_pred HhhC
Q 041458 369 MFHR 372 (568)
Q Consensus 369 ~~~~ 372 (568)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=1.6e-12 Score=126.56 Aligned_cols=276 Identities=13% Similarity=0.104 Sum_probs=187.0
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCC
Q 041458 95 KPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD----ASSYTYLVNCLCKKGNVGYAMQLVEKMEDY----GYPT 166 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~ 166 (568)
......+......+...|++++|+..|+.+.+.+.. + ..++..+...+...|++++|...+++..+. +.+|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345556667778888889999999999988876422 3 246777888888899999999888876532 2111
Q ss_pred -cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHHcCC--------------------HH
Q 041458 167 -NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL-VPN----AFTYSFLLEAAYKERG--------------------VH 220 (568)
Q Consensus 167 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~~~--------------------~~ 220 (568)
...++..+...|...|++++|...+++..+... .++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 255677888888889999999988888765310 012 3467777778888888 88
Q ss_pred HHHHHHHHHHHc----CCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CC----hhHHHHHHHHHHcCCCHH
Q 041458 221 AAMKLLDDIIAK----GGK-PNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFE-PN----VVSYNILLRSLCMEGRWE 290 (568)
Q Consensus 221 ~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~ 290 (568)
+|.+.+++.... +.. ....++..+...|...|++++|...+++..+.... ++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888776543 111 12345777778888888888888888877543110 11 236777778888888888
Q ss_pred HHHHHHHHhccC----CCCc-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCCHH
Q 041458 291 EANELLAEMDGG----DRSP-TIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFR-PS----AASYNPIIARLCSEGKVD 360 (568)
Q Consensus 291 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~ 360 (568)
+|...+++.... +..+ ...++..+...|...|++++|...+++..+.... .+ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 888888776532 1111 1456677778888888888888888776642111 01 345556666777777777
Q ss_pred HHHHHHHHHhh
Q 041458 361 LVVKCLDQMFH 371 (568)
Q Consensus 361 ~a~~~~~~~~~ 371 (568)
+|...+++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766543
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=8.5e-11 Score=109.50 Aligned_cols=218 Identities=11% Similarity=0.012 Sum_probs=148.6
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-------hcCCh-------hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 041458 115 KKAIKVMEMMVSSGIIPDASSYTYLVNCLC-------KKGNV-------GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM 180 (568)
Q Consensus 115 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 180 (568)
++|..+|+++.+.. +.+...|..++..+. +.|++ ++|+.+|++..+.-.|.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777653 235667777766654 34665 7788888887763123356678888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-Hh-hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH-hcCChHHH
Q 041458 181 LGNLNQSLQFLDRLIQKGLVPN-AF-TYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLC-KEGRTEEA 257 (568)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~A 257 (568)
.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++.++... .+...|........ ..|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888764 333 33 677777777778888888888888776532 23444443333222 25788888
Q ss_pred HHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCC-CCc--CHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 041458 258 IRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGD-RSP--TIVTYNILIGSLAYHGKTDHALKVLDEM 334 (568)
Q Consensus 258 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (568)
.++|+...+... -+...|..++..+.+.|++++|..+|++..... ++| ....|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888887766522 256677777777888888888888888877652 233 3557777777777788888888888877
Q ss_pred HHC
Q 041458 335 VKG 337 (568)
Q Consensus 335 ~~~ 337 (568)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=1.6e-12 Score=126.84 Aligned_cols=98 Identities=20% Similarity=0.143 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCH
Q 041458 168 TVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNA----FTYSFLLEAAYKERGVHAAMKLLDDIIAK----GG-KPNL 238 (568)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~ 238 (568)
...+..+...+...|++++|.+.|+++.+.+.. +. ..+..+...+...|++++|...+++.... +. +...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344555666777777777777777777765322 22 35666666777777777777777766543 11 1123
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041458 239 VSYNVLLTGLCKEGRTEEAIRFFRDLPS 266 (568)
Q Consensus 239 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 266 (568)
..+..+...|...|++++|...+++..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~ 154 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLT 154 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455556666666666666666665543
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=2.6e-12 Score=121.38 Aligned_cols=272 Identities=14% Similarity=0.089 Sum_probs=178.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChhhHHHHHHHHHhC----CCC-CcHHH
Q 041458 100 QATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD----ASSYTYLVNCLCKKGNVGYAMQLVEKMEDY----GYP-TNTVT 170 (568)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~ 170 (568)
.+......+...|++++|+..|+++.+.... + ...+..+...+...|++++|.+.+++..+. +.+ ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444566677888888888888887775322 2 346667777888888888888887776432 111 12556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHHcCC--------------------HHHHHHH
Q 041458 171 YNSLVRGLCMLGNLNQSLQFLDRLIQKGL-VPN----AFTYSFLLEAAYKERG--------------------VHAAMKL 225 (568)
Q Consensus 171 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~~~--------------------~~~a~~~ 225 (568)
+..+...|...|++++|.+.+++..+... .++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77778888888888888888887654310 112 2366677777777888 7888887
Q ss_pred HHHHHHc----CCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC-----CCChhHHHHHHHHHHcCCCHHHHHHH
Q 041458 226 LDDIIAK----GGK-PNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGF-----EPNVVSYNILLRSLCMEGRWEEANEL 295 (568)
Q Consensus 226 ~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~ 295 (568)
+++.... +.. .....+..+...+...|++++|.+.+++..+... .....++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7776542 111 1234567777788888888888888887654310 01123667777788888888888888
Q ss_pred HHHhccCC----CC-cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCcccHHHHHHHHHhcCCHHHHHHH
Q 041458 296 LAEMDGGD----RS-PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF-----RPSAASYNPIIARLCSEGKVDLVVKC 365 (568)
Q Consensus 296 ~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~ 365 (568)
+++..... .. ....++..+...+...|++++|...+++..+... .....++..+...+.+.|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 87765321 01 1145667777788888888888888877654211 11123556667777777888888877
Q ss_pred HHHHhhC
Q 041458 366 LDQMFHR 372 (568)
Q Consensus 366 ~~~~~~~ 372 (568)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 7777654
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=2.4e-12 Score=121.63 Aligned_cols=280 Identities=13% Similarity=0.063 Sum_probs=191.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC----hhHHHHHHHHHHcCCCHHHHHHHHHHhccC----CC-CcCHh
Q 041458 239 VSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPN----VVSYNILLRSLCMEGRWEEANELLAEMDGG----DR-SPTIV 309 (568)
Q Consensus 239 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~ 309 (568)
..+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++.... +. +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34555667778899999999999988776322 2 356778888888999999999998876432 11 12245
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCC--------------------HHHHHH
Q 041458 310 TYNILIGSLAYHGKTDHALKVLDEMVKGRFR-PS----AASYNPIIARLCSEGK--------------------VDLVVK 364 (568)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~--------------------~~~a~~ 364 (568)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 6777888888888999888888887653111 11 2255566666666676 555555
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-
Q 041458 365 CLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGF- 443 (568)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 443 (568)
.+++... +...... .......+..+...+...|++++|.+.+++..+...
T Consensus 165 ~~~~a~~---------------------------~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 165 LYEENLS---------------------------LVTALGD--RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHHH---------------------------HHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---------------------------HHHhcCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 5544322 1111110 011224577778888889999999999988764311
Q ss_pred CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHC---
Q 041458 444 TPD----SYTYSSLIRGLCMEGLIEEALEIFVVMEEY----DYKP-DVDNFNALLLGLCKSRRTDLSLEVFQMMIEK--- 511 (568)
Q Consensus 444 ~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 511 (568)
.++ ..++..+...+...|++++|.+++++..+. +..+ ...++..+...|...|++++|.+.++++.+.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 011 236788888899999999999999887642 1111 1556778888999999999999999988763
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041458 512 -GQMP-NETTYTILVEGIAHQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 512 -g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 548 (568)
+..+ ...++..+...+...|++++|.+++++..+...
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 1111 245777888999999999999999999987654
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=1.4e-11 Score=118.81 Aligned_cols=236 Identities=6% Similarity=-0.058 Sum_probs=151.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccC----CCCc-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C-----CcccHH
Q 041458 279 LLRSLCMEGRWEEANELLAEMDGG----DRSP-TIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFR-P-----SAASYN 347 (568)
Q Consensus 279 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 347 (568)
....+...|++++|...+++.... +-.+ ...++..+...|...|++++|...+.+..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566777788887777776543 1111 2356677777777888888888777776542100 1 123556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 041458 348 PIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGK 427 (568)
Q Consensus 348 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 427 (568)
.+...|...|++++|...+++..+.. .... .......++..+...|...|+
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~---------------------------~~~~--~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMA---------------------------EAEK--QPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH---------------------------HHTT--CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHH---------------------------HHcC--ChHHHHHHHHHHHHHHHHCCC
Confidence 66667777777777777776655321 1000 000011346667778888888
Q ss_pred hhHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChhhHHHHHHHHHccCC-
Q 041458 428 TYQAFQLLYEMTKY----GF-TPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEY----DYKPDVDNFNALLLGLCKSRR- 497 (568)
Q Consensus 428 ~~~A~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~- 497 (568)
+++|++.+++..+. +. +....++..+...+...|++++|.+.+++..+. +-+.....+..+...+...|+
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 88888888877652 22 223556778888888889998888888877642 111122335667778888888
Q ss_pred --hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 498 --TDLSLEVFQMMIEKGQMP-NETTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 498 --~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
.++|..++++. +..| ....+..+...|...|++++|.+++++..+.
T Consensus 320 ~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 320 EAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 66777776665 2333 3456677888888999999999999888754
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=1.1e-11 Score=122.73 Aligned_cols=214 Identities=14% Similarity=0.046 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh-hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 041458 114 MKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNV-GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLD 192 (568)
Q Consensus 114 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 192 (568)
++++++.++...... ..+...+..+...+...|++ ++|++.|++..+.. +.+..+|..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555544432 12455555555666666666 66666666655542 2345566666666666666666666666
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc--------CChH
Q 041458 193 RLIQKGLVPNAFTYSFLLEAAYKE---------RGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKE--------GRTE 255 (568)
Q Consensus 193 ~m~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------g~~~ 255 (568)
+..+. .|+...+..+...+... |++++|.+.|++.++.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66554 34455555555566665 66666666666666552 22455566666666555 6666
Q ss_pred HHHHHHHHhhhCCCC--CChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 041458 256 EAIRFFRDLPSKGFE--PNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDE 333 (568)
Q Consensus 256 ~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (568)
+|++.|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|+.++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666666554210 255566666666666666666666666665543 33445566666666666666666654433
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=5.7e-11 Score=101.39 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=112.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
+...|..+...+.+.|++++|++.|++..+..+ -+..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 455677777777777777777777777776542 256667777777777777777777777766542 335566666667
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 177 GLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
.+...++++.|.+.+.+..+.. +.+...+..+...+.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 7777777777777777766653 2255666666677777777777777777766652 2355666667777777777777
Q ss_pred HHHHHHHhhhC
Q 041458 257 AIRFFRDLPSK 267 (568)
Q Consensus 257 A~~~~~~~~~~ 267 (568)
|++.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777766654
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=1.5e-11 Score=118.71 Aligned_cols=296 Identities=7% Similarity=-0.040 Sum_probs=170.9
Q ss_pred hhccCChHHHHHHHHHHHhC--CCCCC--HHhHHHHHHH--HHhcCChhHHH-----------HHHHHHHHCCCCCC---
Q 041458 73 RHRDHKLNDAFLQLERMVSK--GHKPD--VVQATNLLYD--LCKANKMKKAI-----------KVMEMMVSSGIIPD--- 132 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~A~-----------~~~~~~~~~~~~~~--- 132 (568)
..+.+++++|..+++++.+. ....| ...|..++.. ..-.++++.+. +.++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45678888888888877553 12123 3333333322 11223334444 56665543210001
Q ss_pred -HhhHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CC----
Q 041458 133 -ASSYTYLVNCLCKKGNVGYAMQLVEKMEDY----GYPT-NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL-VP---- 201 (568)
Q Consensus 133 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~---- 201 (568)
...+......+...|++++|.+.|++..+. +-++ ...++..+...|...|++++|.+.+++..+.-. .+
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 011122445666778888888888887653 1111 345677778888888888888888877765310 11
Q ss_pred -CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C----CHhhHHHHHHHHHhcCChHHHHHHHHHhhhC----CC-C
Q 041458 202 -NAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGK-P----NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK----GF-E 270 (568)
Q Consensus 202 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~-~ 270 (568)
...+++.+...+...|++++|...|++.++.... + ...++..+..+|...|++++|.+.|++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1345666777777788888888877776643110 1 1235666777777788888888777776651 22 2
Q ss_pred CChhHHHHHHHHHHcCCCHHHHHHHHHHhccC----CCCcCHhhHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCC-C
Q 041458 271 PNVVSYNILLRSLCMEGRWEEANELLAEMDGG----DRSPTIVTYNILIGSLAYHGK---TDHALKVLDEMVKGRFRP-S 342 (568)
Q Consensus 271 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~ 342 (568)
....++..+...|.+.|++++|...+++.... +-+.....+..+...|...|+ .++|+.++++. +..+ .
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~ 338 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL 338 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence 23456677777777778887777777766432 111112234556666667777 55565555544 1111 2
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 041458 343 AASYNPIIARLCSEGKVDLVVKCLDQMFH 371 (568)
Q Consensus 343 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 371 (568)
...+..+...|...|++++|...+++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23455566667777777777777766654
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=2.7e-12 Score=119.92 Aligned_cols=239 Identities=12% Similarity=0.072 Sum_probs=149.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC------C
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSS-------GIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDY------G 163 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~ 163 (568)
+...+..+...+...|++++|..+|+++.+. .......++..+...|...|++++|.+.+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566788888899999999999999988772 22224567788888899999999999999887753 1
Q ss_pred -CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 041458 164 -YPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK------GLVP-NAFTYSFLLEAAYKERGVHAAMKLLDDIIAK--- 232 (568)
Q Consensus 164 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 232 (568)
.+....++..+...|...|++++|.+.+++..+. +..| ....+..+...+...|++++|.+.++++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2234667888888999999999999999888764 1112 3455677777888888888888888887664
Q ss_pred ---CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHhhhC-------CCCCChh-HHH------HHHHHHHcCCCHHHHHH
Q 041458 233 ---GGKP-NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK-------GFEPNVV-SYN------ILLRSLCMEGRWEEANE 294 (568)
Q Consensus 233 ---~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~-~~~------~l~~~~~~~g~~~~a~~ 294 (568)
+..| ...++..+..+|...|++++|.+.|+++.+. ...+... .+. .+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 3456777778888888888888888877653 1111111 111 11111222233333334
Q ss_pred HHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 295 LLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
.++...... +.+..++..+...|.+.|++++|.+.|++..+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444433221 22344555566666666666666666665543
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=8.4e-11 Score=100.30 Aligned_cols=164 Identities=19% Similarity=0.148 Sum_probs=69.9
Q ss_pred HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 041458 133 ASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEA 212 (568)
Q Consensus 133 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 212 (568)
..+|..+...|.+.|++++|++.|++..+.. |.+..+|..+..+|.+.|++++|...+....... ..+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 3444444444555555555555555444432 2234444444444444455555544444444332 1133333444444
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHH
Q 041458 213 AYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEA 292 (568)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 292 (568)
+...++++.+...+.+..... +.+...+..+...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 444444444444444444331 113333444444444444444444444444333111 233344444444444444444
Q ss_pred HHHHHHhc
Q 041458 293 NELLAEMD 300 (568)
Q Consensus 293 ~~~~~~~~ 300 (568)
.+.|++..
T Consensus 161 ~~~~~~al 168 (184)
T 3vtx_A 161 VKYFKKAL 168 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=1.4e-11 Score=121.91 Aligned_cols=215 Identities=12% Similarity=-0.013 Sum_probs=164.6
Q ss_pred hhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 041458 149 VGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNL-NQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLD 227 (568)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 227 (568)
++++++.++..... .+.+...+..+...+...|++ ++|.+.|++..+.. +.+...|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56666777766554 334677888888888888888 88888888887763 2357788888888888888888888888
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhc---------CChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcC--------CCHH
Q 041458 228 DIIAKGGKPNLVSYNVLLTGLCKE---------GRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCME--------GRWE 290 (568)
Q Consensus 228 ~~~~~~~~~~~~~~~~ll~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 290 (568)
+.++. .|+...+..+...+... |++++|++.|++..+.... +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88876 35567788888888888 8888888888888776332 567788888888877 8888
Q ss_pred HHHHHHHHhccCCCC---cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 041458 291 EANELLAEMDGGDRS---PTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLD 367 (568)
Q Consensus 291 ~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 367 (568)
+|...|++..+.. + .+...|..+...|...|++++|.+.|++..+.... +...+..+...+...|++++|++.+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888887653 3 47778888888888888888888888888775432 45567777778888888888887665
Q ss_pred HHh
Q 041458 368 QMF 370 (568)
Q Consensus 368 ~~~ 370 (568)
++.
T Consensus 317 ~~~ 319 (474)
T 4abn_A 317 KTK 319 (474)
T ss_dssp TCC
T ss_pred ccc
Confidence 553
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=2.7e-11 Score=113.10 Aligned_cols=239 Identities=13% Similarity=0.028 Sum_probs=142.0
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhC-------CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------C
Q 041458 132 DASSYTYLVNCLCKKGNVGYAMQLVEKMEDY-------GYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK------G 198 (568)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~ 198 (568)
+..++..+...+...|++++|..+|+++.+. ..+....++..+...|...|++++|.+.+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456777888888888888888888887762 23334567778888888888888888888887653 1
Q ss_pred C-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC---
Q 041458 199 L-VPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAK------GG-KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK--- 267 (568)
Q Consensus 199 ~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--- 267 (568)
. .....++..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|.++|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223456677777778888888888888877654 11 223445667777777888888888888776553
Q ss_pred ---CCCC-ChhHHHHHHHHHHcCCCHHHHHHHHHHhccC-------CCCcCH-------hhHHHHHHHHHhcCChHHHHH
Q 041458 268 ---GFEP-NVVSYNILLRSLCMEGRWEEANELLAEMDGG-------DRSPTI-------VTYNILIGSLAYHGKTDHALK 329 (568)
Q Consensus 268 ---~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~g~~~~a~~ 329 (568)
+..| ...++..+...|...|++++|...++++.+. ...+.. ..+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 2345666777777778888887777776542 011111 111122222333344444444
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 041458 330 VLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFH 371 (568)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 371 (568)
.+....... +....++..+...|.+.|++++|.+.+++.++
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 454444322 12344556666666677777777776666554
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=1.7e-09 Score=103.90 Aligned_cols=269 Identities=12% Similarity=0.038 Sum_probs=171.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHhcCChhhHHHHHHHHHhC----CCC-CcHHHHHH
Q 041458 103 NLLYDLCKANKMKKAIKVMEMMVSSGIIPDAS----SYTYLVNCLCKKGNVGYAMQLVEKMEDY----GYP-TNTVTYNS 173 (568)
Q Consensus 103 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 173 (568)
.....+...|++++|...+++........+.. +++.+...+...|++++|.+.+++..+. |.+ ....++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445567888888888888877754222222 4555666777888888888888776542 110 01233566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCC--C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHhhHH
Q 041458 174 LVRGLCMLGNLNQSLQFLDRLIQK----GLV--P-NAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGK----PNLVSYN 242 (568)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~ 242 (568)
+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++....... .....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777788888888888888877653 211 2 2345556777788888888888888887764321 1234566
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCh-hHHH-----HHHHHHHcCCCHHHHHHHHHHhccCCCCcC---HhhHHH
Q 041458 243 VLLTGLCKEGRTEEAIRFFRDLPSKGFEPNV-VSYN-----ILLRSLCMEGRWEEANELLAEMDGGDRSPT---IVTYNI 313 (568)
Q Consensus 243 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ 313 (568)
.+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 7777888888888888888877543111111 1121 233446788888888888888765432211 224566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCCCc-ccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 041458 314 LIGSLAYHGKTDHALKVLDEMVKG----RFRPSA-ASYNPIIARLCSEGKVDLVVKCLDQMFH 371 (568)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~ 371 (568)
+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777888888888888888776542 111111 1344455566677777777777766653
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=9.7e-10 Score=105.51 Aligned_cols=264 Identities=14% Similarity=0.064 Sum_probs=191.5
Q ss_pred hhccCChHHHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH----hhHHHHHHHH
Q 041458 73 RHRDHKLNDAFLQLERMVSKGHKPDVV----QATNLLYDLCKANKMKKAIKVMEMMVSSGI-IPDA----SSYTYLVNCL 143 (568)
Q Consensus 73 ~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~li~~~ 143 (568)
+...|++++|...+++.+......+.. .++.+...+...|++++|.+.+++..+... ..+. .++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 346799999999999988765433332 456677788899999999999998765311 1122 2356677788
Q ss_pred HhcCChhhHHHHHHHHHhC----CCC--C-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CHhhHHHHHHH
Q 041458 144 CKKGNVGYAMQLVEKMEDY----GYP--T-NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVP----NAFTYSFLLEA 212 (568)
Q Consensus 144 ~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~~li~~ 212 (568)
...|++++|.+.+++..+. +.+ | ....+..+...+...|++++|...+++..+..... ...++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 9999999999999887642 222 2 34567778889999999999999999987642211 23467778888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-hhHH-----HHHHHHHhcCChHHHHHHHHHhhhCCCCCC---hhHHHHHHHHH
Q 041458 213 AYKERGVHAAMKLLDDIIAKGGKPNL-VSYN-----VLLTGLCKEGRTEEAIRFFRDLPSKGFEPN---VVSYNILLRSL 283 (568)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~ 283 (568)
+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 99999999999999998764222111 1222 233457799999999999999876432211 22466778889
Q ss_pred HcCCCHHHHHHHHHHhccC----CCCcCH-hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 284 CMEGRWEEANELLAEMDGG----DRSPTI-VTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
...|++++|...+++.... +..++. ..+..+...+...|+.++|...+++...
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999887532 222222 3666778888999999999999998765
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=3.7e-10 Score=108.62 Aligned_cols=234 Identities=12% Similarity=-0.046 Sum_probs=147.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccCCC-Cc----CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CC-CcccHH
Q 041458 279 LLRSLCMEGRWEEANELLAEMDGGDR-SP----TIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF-----RP-SAASYN 347 (568)
Q Consensus 279 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~-~~~~~~ 347 (568)
....+...|++++|...+++...... .+ ...++..+...|...|+++.|...+.+..+... .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445677888888888777654311 01 234566777777888888888877777654210 10 133455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 041458 348 PIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGK 427 (568)
Q Consensus 348 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 427 (568)
.+...|...|++++|...+.+..+. .+.... ......++..+...|...|+
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~---------------------------~~~~~~--~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALEL---------------------------AMDIQN--DRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---------------------------HHHTTC--HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---------------------------HHHcCC--HHHHHHHHHHHHHHHHHCCC
Confidence 6666777777777777777665432 110000 00012346667777888888
Q ss_pred hhHHHHHHHHHHH-----CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCChhhHHHHHHHHHccCC-
Q 041458 428 TYQAFQLLYEMTK-----YGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYD----YKPDVDNFNALLLGLCKSRR- 497 (568)
Q Consensus 428 ~~~A~~~~~~~~~-----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~- 497 (568)
+++|++.+++..+ .. +....++..+...+.+.|++++|.+++++..+.. -+.....+..+...+...|+
T Consensus 238 ~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~ 316 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE 316 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 8888888887765 32 2225667788888888899999988888876421 11123345556666667777
Q ss_pred --hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 498 --TDLSLEVFQMMIEKGQMP-NETTYTILVEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 498 --~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (568)
.++|...+++. +..| ....+..+...|...|++++|.+++++..+
T Consensus 317 ~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 317 RKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66677666652 2223 234566778888889999999998888765
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.27 E-value=9.7e-10 Score=105.70 Aligned_cols=159 Identities=8% Similarity=-0.008 Sum_probs=79.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC-CC----CHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC-----CC-ChhHHHHHHH
Q 041458 213 AYKERGVHAAMKLLDDIIAKGG-KP----NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGF-----EP-NVVSYNILLR 281 (568)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----~p-~~~~~~~l~~ 281 (568)
+...|++++|...|++...... .+ ...++..+...|...|++++|...+++..+... .+ ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3445555555555555443210 01 123444555555555565555555555433100 00 1234555555
Q ss_pred HHHcCCCHHHHHHHHHHhccC----CCC-cCHhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCcccHHHHHH
Q 041458 282 SLCMEGRWEEANELLAEMDGG----DRS-PTIVTYNILIGSLAYHGKTDHALKVLDEMVK-----GRFRPSAASYNPIIA 351 (568)
Q Consensus 282 ~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~ 351 (568)
.|...|++++|.+.+++..+. +.. ....++..+...|...|++++|.+.+++..+ .... ...++..+..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHH
Confidence 666666666666666554331 101 1123455566666666666666666666554 3222 2444555555
Q ss_pred HHHhcCCHHHHHHHHHHHhhC
Q 041458 352 RLCSEGKVDLVVKCLDQMFHR 372 (568)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~ 372 (568)
.+.+.|++++|...+++..+.
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 666666666666666665543
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=8.4e-10 Score=97.75 Aligned_cols=208 Identities=11% Similarity=-0.014 Sum_probs=152.2
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhH-HHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 041458 342 SAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTY-NGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVIT 420 (568)
Q Consensus 342 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 420 (568)
|+..+......+...|++++|+..|++.++..+.++...+ .....+...|++++|...|++.....+. +...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 5567777888889999999999999999887763444333 3467788889999999999988876554 5667888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHH
Q 041458 421 SLCRKGKTYQAFQLLYEMTKYGFTPDS-------YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPD---VDNFNALLL 490 (568)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~ 490 (568)
.+...|++++|++.+++..+... .+. ..|..+...+...|++++|.+.|++..+. .|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 88999999999999998887532 233 34777778888889999999999888865 343 456667777
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhh
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQY 561 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 561 (568)
+|...| ..+++++...+ ..+...+.... ....+.+++|..++++..+..+.+..+...+....
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 775443 34455555542 33444444433 33456689999999999999999988877766543
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=7.7e-10 Score=94.18 Aligned_cols=164 Identities=16% Similarity=0.086 Sum_probs=101.8
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041458 99 VQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGL 178 (568)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 178 (568)
..+..+...+...|++++|+..++.+.+... .+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3455566666677777777777776665432 245566666667777777777777777666542 33556666666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 041458 179 CMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAI 258 (568)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 258 (568)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 67777777777776666542 2355556666666666666666666666666552 224555566666666666666666
Q ss_pred HHHHHhhh
Q 041458 259 RFFRDLPS 266 (568)
Q Consensus 259 ~~~~~~~~ 266 (568)
+.++...+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=5.2e-10 Score=95.25 Aligned_cols=163 Identities=9% Similarity=0.015 Sum_probs=127.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 463 (568)
...+...|++++|...++++....+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 92 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKY 92 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCH
Confidence 34455556666666666666554332 55667788888888999999999999888753 33567788888889999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 464 EEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 464 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
++|.++++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.++++++
T Consensus 93 ~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 93 DLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999988865433 67788888899999999999999999988863 446788888899999999999999999998
Q ss_pred HHcCCCC
Q 041458 544 QLRQVVS 550 (568)
Q Consensus 544 ~~~~~~~ 550 (568)
.+..+.+
T Consensus 171 ~~~~~~~ 177 (186)
T 3as5_A 171 NELDEGA 177 (186)
T ss_dssp HHHHHCC
T ss_pred HHcCCCc
Confidence 8776653
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.22 E-value=5.5e-10 Score=115.04 Aligned_cols=163 Identities=20% Similarity=0.174 Sum_probs=86.0
Q ss_pred HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 041458 133 ASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEA 212 (568)
Q Consensus 133 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 212 (568)
..+|+.|...|.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|++.|++.++... -+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4455555556666666666666665555532 22455555555556666666666666655555421 134555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHH
Q 041458 213 AYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEA 292 (568)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 292 (568)
+.+.|++++|++.|++.++.. +-+...|+.+..+|.+.|++++|++.|++..+.... +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 555555555555555555542 123445555555555555555555555555443211 344455555555555555555
Q ss_pred HHHHHHh
Q 041458 293 NELLAEM 299 (568)
Q Consensus 293 ~~~~~~~ 299 (568)
.+.+++.
T Consensus 165 ~~~~~ka 171 (723)
T 4gyw_A 165 DERMKKL 171 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=6.1e-10 Score=114.71 Aligned_cols=167 Identities=16% Similarity=0.065 Sum_probs=146.6
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHH
Q 041458 96 PDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLV 175 (568)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 175 (568)
.+..+++.+...+.+.|++++|++.|++..+... -+..+|..+..+|.+.|++++|++.|++..+.. +.+..+|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3567899999999999999999999999998753 267889999999999999999999999998863 44688999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChH
Q 041458 176 RGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTE 255 (568)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 255 (568)
.+|.+.|++++|++.|++..+... -+...|..+..++.+.|++++|++.|++.++.. +-+...+..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999988643 367899999999999999999999999999873 336788999999999999999
Q ss_pred HHHHHHHHhhh
Q 041458 256 EAIRFFRDLPS 266 (568)
Q Consensus 256 ~A~~~~~~~~~ 266 (568)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887754
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=2.4e-09 Score=94.75 Aligned_cols=194 Identities=14% Similarity=0.033 Sum_probs=113.7
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041458 132 DASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLE 211 (568)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 211 (568)
|+..+......+...|++++|++.|++..+...+++...+..+..++...|++++|.+.|++..+.... +...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 556666677777777777777777777776543256666666777777777777777777777765322 4556666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH-------hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC---hhHHHHHHH
Q 041458 212 AAYKERGVHAAMKLLDDIIAKGGKPNL-------VSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPN---VVSYNILLR 281 (568)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~ 281 (568)
.+...|++++|...+++.++... .+. ..|..+...+...|++++|++.|++..+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 77777777777777777766522 233 34555666666667777777777766654 333 344555555
Q ss_pred HHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 041458 282 SLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG 337 (568)
Q Consensus 282 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (568)
+|...| ...++++...+ ..+...+.... ....+.+++|+..+++..+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 554332 33334443332 22222332222 22234455666666665553
No 85
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.17 E-value=2.4e-08 Score=98.71 Aligned_cols=378 Identities=8% Similarity=-0.044 Sum_probs=218.3
Q ss_pred hcC-ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-hHHH
Q 041458 110 KAN-KMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGN-LNQS 187 (568)
Q Consensus 110 ~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a 187 (568)
+.| +++.|+.+|+.+... -|. |+++.+.++|++.... .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 446 478888888887764 233 8899999999998874 4688899888888877763 4567
Q ss_pred HHHHHHHHHC-CCC-CCHhhHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 041458 188 LQFLDRLIQK-GLV-PNAFTYSFLLEAAY----KERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFF 261 (568)
Q Consensus 188 ~~~~~~m~~~-~~~-~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 261 (568)
..+|+..... |.. .+...|...+..+. ..++.+.+.++|++.+......-...|......- +......+.++.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHH
Confidence 7788877653 433 35667777776543 3466788888888888742111112222222211 111122222222
Q ss_pred HHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcC--C-----hHHHHHHHHHH
Q 041458 262 RDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHG--K-----TDHALKVLDEM 334 (568)
Q Consensus 262 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~~ 334 (568)
.+.. +.+..|..+++++...-...+...|...+..-...+ - .+.+..+|+++
T Consensus 147 ~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 147 GDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 2211 122223333332221000012334544444322211 1 23456677777
Q ss_pred HHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHhCCCHHHHHHHHHHHhhCC------
Q 041458 335 VKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQ------ 407 (568)
Q Consensus 335 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~------ 407 (568)
+... +.+...|...+.-+.+.|+.+.|..++++.+.. |....... ...+...+ +. ++.+.+..
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~---~~---~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEE---AV---YGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCT---HH---HHHHHHHTC-----
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchh---HH---HHHHHHHHHhhccc
Confidence 6643 234566777777777778888888888888776 33222222 11111111 11 22221110
Q ss_pred ------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCC
Q 041458 408 ------NSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM-EGLIEEALEIFVVMEEYDYKP 480 (568)
Q Consensus 408 ------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~~~~p 480 (568)
.......|...+..+.+.++.+.|..+|++. +. ...+...|...+..-.. .++.+.|..+|+...+.-..
T Consensus 276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~- 352 (493)
T 2uy1_A 276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD- 352 (493)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-
T ss_pred hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-
Confidence 0112245777777777788899999999998 32 12234444432222222 34799999999998864322
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (568)
+...|...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+.+++++...
T Consensus 353 ~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45567778888888999999999999972 2578888888877888999999998888874
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=3.1e-10 Score=104.12 Aligned_cols=226 Identities=15% Similarity=0.055 Sum_probs=156.4
Q ss_pred cCChHHHHHHHHHHHh-------CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHhhHHHHHH
Q 041458 76 DHKLNDAFLQLERMVS-------KGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSS------GIIP-DASSYTYLVN 141 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~li~ 141 (568)
.|++++|+..|++.++ ...+.....+..+...+...|++++|+..++++.+. +-.| ...++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4455555555555443 233345677888999999999999999999998764 2122 3557888999
Q ss_pred HHHhcCChhhHHHHHHHHHhC------C-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHhhHH
Q 041458 142 CLCKKGNVGYAMQLVEKMEDY------G-YPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK------GLVP-NAFTYS 207 (568)
Q Consensus 142 ~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~ 207 (568)
.|...|++++|.+.|++..+. . .+....++..+...|...|++++|.+.+++..+. +..| ...++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999988764 1 1334678889999999999999999999998764 1122 356788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-------CCCC-CHhhHHHHHHHHHhcCC------hHHHHHHHHHhhhCCCCCCh
Q 041458 208 FLLEAAYKERGVHAAMKLLDDIIAK-------GGKP-NLVSYNVLLTGLCKEGR------TEEAIRFFRDLPSKGFEPNV 273 (568)
Q Consensus 208 ~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~ll~~~~~~g~------~~~A~~~~~~~~~~~~~p~~ 273 (568)
.+...+...|++++|...+++.... ...+ ....+..+...+...+. +..+...++..... .....
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHH
Confidence 8899999999999999999998764 1122 22333333333333332 33444444433322 12245
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhccC
Q 041458 274 VSYNILLRSLCMEGRWEEANELLAEMDGG 302 (568)
Q Consensus 274 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 302 (568)
.++..+...|...|++++|..++++..+.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67888999999999999999999987653
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=4e-10 Score=103.32 Aligned_cols=157 Identities=12% Similarity=0.077 Sum_probs=93.4
Q ss_pred hcCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC------C-CCCcHHHHHHHH
Q 041458 110 KANKMKKAIKVMEMMVSS-------GIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDY------G-YPTNTVTYNSLV 175 (568)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li 175 (568)
..|++++|+..|++..+. ..+....++..+...|...|++++|++.+++..+. + .+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666665541 11123456667777777777777777777776643 1 122345667777
Q ss_pred HHHHhcCChHHHHHHHHHHHHC------CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHhhH
Q 041458 176 RGLCMLGNLNQSLQFLDRLIQK------GL-VPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAK------GGKP-NLVSY 241 (568)
Q Consensus 176 ~~~~~~g~~~~a~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~ 241 (568)
..|...|++++|.+.+++..+. .. .....++..+...+...|++++|...+++.... +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 7777777777777777776543 10 112445556666666667777777766666553 1111 23455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhh
Q 041458 242 NVLLTGLCKEGRTEEAIRFFRDLPS 266 (568)
Q Consensus 242 ~~ll~~~~~~g~~~~A~~~~~~~~~ 266 (568)
..+...|...|++++|...|++..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666666666666666666543
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.14 E-value=9.1e-10 Score=101.54 Aligned_cols=141 Identities=10% Similarity=0.027 Sum_probs=78.1
Q ss_pred HHHHHHHHHhc-CChhHHHHHHHHHHHCCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh------
Q 041458 415 YKYVITSLCRK-GKTYQAFQLLYEMTKYGFTP-D----SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDV------ 482 (568)
Q Consensus 415 ~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~------ 482 (568)
++.+...|... |++++|+..|++..+..... + ..++..+...+...|++++|...|++..+.......
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 44555666664 77777777776665421100 1 235666677777777777777777777654333221
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCHHHH
Q 041458 483 DNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE------TTYTILVEGIA--HQDELELSAEVLKELQLRQVVSESAV 554 (568)
Q Consensus 483 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~ 554 (568)
..|..+..++...|++++|...+++..+. .|+. ..+..++.++. ..+++++|.+.++++...++......
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 14556666677777777777777776652 3321 12334445553 34556666666666655544443333
Q ss_pred HHH
Q 041458 555 ERL 557 (568)
Q Consensus 555 ~~l 557 (568)
..+
T Consensus 278 ~~~ 280 (292)
T 1qqe_A 278 NKI 280 (292)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.13 E-value=2.4e-08 Score=90.09 Aligned_cols=179 Identities=13% Similarity=0.079 Sum_probs=83.8
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041458 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL-VPNAFTYSFLLEAAYKERGVHAAMKLLDDII 230 (568)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 230 (568)
|+..|++..+.+ +++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555554433 23344444555556666666666666665544332 1234445555555566666666666666555
Q ss_pred HcCCCC-----CHhhHHHHHHHH--Hh--cCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhcc
Q 041458 231 AKGGKP-----NLVSYNVLLTGL--CK--EGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDG 301 (568)
Q Consensus 231 ~~~~~~-----~~~~~~~ll~~~--~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 301 (568)
+. .| +..+...+..++ .. .++..+|..+|+++.+. .|+..+-..++.++.+.|++++|++.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 23 122333333331 11 22555666666655443 22322222333355555666666655554433
Q ss_pred CC---------CCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 041458 302 GD---------RSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKG 337 (568)
Q Consensus 302 ~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (568)
.. -+.|..+...++......|+ +|.+++.++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 10 02234444344444444444 455555555543
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=5.9e-09 Score=83.26 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=109.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLC 493 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 493 (568)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.++++++.+.+.. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 46677788888999999999999888753 235677888888899999999999999998865433 6778888899999
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 494 KSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
..|++++|.++++++.+.. +.+...+..+...+...|++++|.+.++++.+.++.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999998752 446788888899999999999999999998887654
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.09 E-value=2.8e-08 Score=89.64 Aligned_cols=181 Identities=10% Similarity=0.003 Sum_probs=129.8
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 041458 187 SLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGG-KPNLVSYNVLLTGLCKEGRTEEAIRFFRDLP 265 (568)
Q Consensus 187 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 265 (568)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777777654 45666667788888899999999999998877654 2366777888889999999999999999987
Q ss_pred hCCCCC-----ChhHHHHHHHH--HHcCC--CHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 266 SKGFEP-----NVVSYNILLRS--LCMEG--RWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 266 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
+. .| +..+...++.+ ....| +..+|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 45 24555556655 33334 899999999998665 34433444555588899999999999987654
Q ss_pred CC---------CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 041458 337 GR---------FRPSAASYNPIIARLCSEGKVDLVVKCLDQMFHRRC 374 (568)
Q Consensus 337 ~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 374 (568)
.. -+.++.+...+|......|+ .|.+++.++.+..+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 21 02355566455555556676 78888998888753
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.08 E-value=6.7e-10 Score=90.85 Aligned_cols=144 Identities=13% Similarity=-0.014 Sum_probs=116.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 041458 420 TSLCRKGKTYQAFQLLYEMTKYGFTP-DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRT 498 (568)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 498 (568)
..+...|++++|+..+...... .| +...+..+...|...|++++|.+.|++..+..+. +...|..+..+|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 3445567888888888887653 23 3456778889999999999999999999876554 788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH-HHHHHHHcCCCCHHHHHHHHHhhhhcCCC
Q 041458 499 DLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAE-VLKELQLRQVVSESAVERLVMQYDFEGIE 567 (568)
Q Consensus 499 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 567 (568)
++|...|++.++.. +-+..+|..+...+.+.|++++|.+ +++++++..|.++.++......+..+|.+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~d 150 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGED 150 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCcC
Confidence 99999999999852 3367888899999999999876655 56999999999999988888888888864
No 93
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.07 E-value=8.7e-08 Score=87.45 Aligned_cols=233 Identities=10% Similarity=-0.014 Sum_probs=163.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCChhhHHHHHHH----HhC---CCH
Q 041458 323 KTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEG--KVDLVVKCLDQMFHRRCKPNEGTYNGLAML----CGV---GKV 393 (568)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~ 393 (568)
..++|+++++.++..++. +...|+.--..+...+ +++++++.++.++...+........-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 335666666666654322 3344555555555556 667777777766665544333332221111 223 667
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC------HHH
Q 041458 394 QEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTY--QAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGL------IEE 465 (568)
Q Consensus 394 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 465 (568)
++++..++.+.+.+++ +...|+.-...+.+.|.++ ++++.++++++..+. |...|+.-.....+.|. +++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 7788888877776555 6778888888888888888 999999999987544 67788877777777776 899
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 041458 466 ALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDL-SLEVFQMMIEKG--QMPNETTYTILVEGIAHQDELELSAEVLKE 542 (568)
Q Consensus 466 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 542 (568)
++++++.+....+. |...|+.+...+.+.|+..+ +..+.+++.+.+ -..+...+..+..++.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999999877666 88899988888888887444 556666665532 134778899999999999999999999999
Q ss_pred HHH-cCCCCHHHHHHHHH
Q 041458 543 LQL-RQVVSESAVERLVM 559 (568)
Q Consensus 543 ~~~-~~~~~~~~~~~l~~ 559 (568)
+.+ .++...........
T Consensus 284 l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHTTCGGGHHHHHHHHH
T ss_pred HHhccChHHHHHHHHHHh
Confidence 987 68876665554443
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=1.8e-08 Score=92.75 Aligned_cols=159 Identities=10% Similarity=-0.044 Sum_probs=74.1
Q ss_pred HHHhcCChhHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCC-cHHHHHHHHH
Q 041458 107 DLCKANKMKKAIKVMEMMVSS----GIIPD-ASSYTYLVNCLCKKGNVGYAMQLVEKMEDY----GYPT-NTVTYNSLVR 176 (568)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~ 176 (568)
.|...|++++|.+.|++..+. |-.++ ..+|+.+..+|.+.|++++|+..+++..+. |-.. -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666665442 11111 345556666666666666666666555432 1000 0234555555
Q ss_pred HHHhc-CChHHHHHHHHHHHHCCCCC-C----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------hhHHHH
Q 041458 177 GLCML-GNLNQSLQFLDRLIQKGLVP-N----AFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNL------VSYNVL 244 (568)
Q Consensus 177 ~~~~~-g~~~~a~~~~~~m~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l 244 (568)
.|... |++++|++.|++..+..... + ..++..+...+.+.|++++|...|++.......... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 55553 55555555555544321000 0 123444444455555555555555554443221111 023334
Q ss_pred HHHHHhcCChHHHHHHHHHhh
Q 041458 245 LTGLCKEGRTEEAIRFFRDLP 265 (568)
Q Consensus 245 l~~~~~~g~~~~A~~~~~~~~ 265 (568)
..++...|++++|...|++..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444444555555555555444
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.05 E-value=3e-07 Score=90.82 Aligned_cols=84 Identities=8% Similarity=-0.049 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHHC-CCC-CCHhhHHHHHHHHH----hcCCh
Q 041458 77 HKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANK-MKKAIKVMEMMVSS-GII-PDASSYTYLVNCLC----KKGNV 149 (568)
Q Consensus 77 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~-~~~-~~~~~~~~li~~~~----~~g~~ 149 (568)
++++.+..+|++.+.. .|++..|...+....+.+. .+....+|+.+... |.. .+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 5677888888887774 4577788877777666553 35566777776653 322 24566666665543 23567
Q ss_pred hhHHHHHHHHHhC
Q 041458 150 GYAMQLVEKMEDY 162 (568)
Q Consensus 150 ~~a~~~~~~~~~~ 162 (568)
+.+.++|++....
T Consensus 106 ~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 106 EKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhC
Confidence 7788888887763
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.99 E-value=5.7e-08 Score=84.57 Aligned_cols=176 Identities=13% Similarity=0.042 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC----ChhhHHHHH
Q 041458 81 DAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKG----NVGYAMQLV 156 (568)
Q Consensus 81 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~ 156 (568)
+|+..|+...+.| +...+..+...|...+++++|+++|++..+.| +...+..|...|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777776653 66777778888888888888888888888764 56677777777766 5 788888888
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHH----cCCHHHHHHHHH
Q 041458 157 EKMEDYGYPTNTVTYNSLVRGLCM----LGNLNQSLQFLDRLIQKGLV-PNAFTYSFLLEAAYK----ERGVHAAMKLLD 227 (568)
Q Consensus 157 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~ 227 (568)
++..+.| +..++..|...|.. .+++++|++.|++..+.|.. .+...+..|...|.. .++.++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887764 66677777777776 67888888888887765421 015666667777776 667777777777
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhc-C-----ChHHHHHHHHHhhhCC
Q 041458 228 DIIAKGGKPNLVSYNVLLTGLCKE-G-----RTEEAIRFFRDLPSKG 268 (568)
Q Consensus 228 ~~~~~~~~~~~~~~~~ll~~~~~~-g-----~~~~A~~~~~~~~~~~ 268 (568)
+..+. ..+...+..|...|... | +.++|..+|+...+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77665 22344555566666442 2 6777777777766654
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=4.1e-08 Score=88.78 Aligned_cols=65 Identities=6% Similarity=0.012 Sum_probs=51.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCH
Q 041458 486 NALLLGLCKSRRTDLSLEVFQMMIEKGQMPN----ETTYTILVEGIAHQ----------DELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 486 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~~ 551 (568)
..+...|.+.|++++|+..|+++++. .|+ ...+..+..++... |++++|...++++++..+.++
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 56678888999999999999998875 333 45677777777765 888999999999999988865
Q ss_pred H
Q 041458 552 S 552 (568)
Q Consensus 552 ~ 552 (568)
.
T Consensus 230 ~ 230 (261)
T 3qky_A 230 L 230 (261)
T ss_dssp H
T ss_pred H
Confidence 3
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=3e-08 Score=89.68 Aligned_cols=187 Identities=11% Similarity=0.019 Sum_probs=113.7
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCcHHH
Q 041458 96 PDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD---ASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGY--PTNTVT 170 (568)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~ 170 (568)
.+...+..+...+.+.|++++|+..|+.+.+.... + ..++..+..+|.+.|++++|+..|++..+... +....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45666777788888899999999999998876422 3 56777788888899999999999988887521 123456
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 041458 171 YNSLVRGLCM--------LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYN 242 (568)
Q Consensus 171 ~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 242 (568)
+..+..++.. .|++++|...|+++.+.... +......+. .+..+... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHHHHH
Confidence 7777788888 88899999999888875221 222221110 00000000 011133
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCC--ChhHHHHHHHHHHcC----------CCHHHHHHHHHHhccC
Q 041458 243 VLLTGLCKEGRTEEAIRFFRDLPSKGFEP--NVVSYNILLRSLCME----------GRWEEANELLAEMDGG 302 (568)
Q Consensus 243 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 302 (568)
.+...|.+.|++++|+..|+.+.+..... ....+..+..+|... |++++|...++++.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 44555566666666666666655442111 123444455555544 5566666666665543
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=4e-08 Score=78.25 Aligned_cols=128 Identities=16% Similarity=0.230 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCM 180 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 180 (568)
|..+...+...|++++|..+++.+.+.+. .+...+..+...+...|++++|.+.++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 44455555566666666666666555432 244455555555555566666666665555432 2344455555555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041458 181 LGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIA 231 (568)
Q Consensus 181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 231 (568)
.|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555555432 12344444445555555555555555555443
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=3.9e-08 Score=85.40 Aligned_cols=93 Identities=13% Similarity=0.169 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhhHHH----------------HHHHHHhcCChhhHHHHHHHHHhCC
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIP-DASSYTY----------------LVNCLCKKGNVGYAMQLVEKMEDYG 163 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~----------------li~~~~~~g~~~~a~~~~~~~~~~~ 163 (568)
+......+...|++++|+..|+...+.. | +...|.. +..+|.+.|++++|+..|++..+..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3344455667777778877777777642 2 2233333 4444444444444444444444331
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 164 YPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQ 196 (568)
Q Consensus 164 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 196 (568)
|.+...+..+..++...|++++|.+.|++..+
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22344444444444444444444444444444
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=5.8e-08 Score=84.55 Aligned_cols=175 Identities=14% Similarity=0.059 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC----ChHHHHHHH
Q 041458 116 KAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLG----NLNQSLQFL 191 (568)
Q Consensus 116 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~ 191 (568)
+|++.|++..+.| ++..+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 45555555556666666666666666665543 44555555555555 4 555666666
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHh----cCChHHHHHHHH
Q 041458 192 DRLIQKGLVPNAFTYSFLLEAAYK----ERGVHAAMKLLDDIIAKGGK-PNLVSYNVLLTGLCK----EGRTEEAIRFFR 262 (568)
Q Consensus 192 ~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~----~g~~~~A~~~~~ 262 (568)
++..+.| +...+..+...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .++.++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 5555433 34444444444444 44555555555555444221 013444444444444 445555555555
Q ss_pred HhhhCCCCCChhHHHHHHHHHHcC-C-----CHHHHHHHHHHhccC
Q 041458 263 DLPSKGFEPNVVSYNILLRSLCME-G-----RWEEANELLAEMDGG 302 (568)
Q Consensus 263 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~ 302 (568)
+..+. ..+...+..|...|... | +.++|..+|++..+.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 54443 11223334444444321 1 455555555544443
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.93 E-value=1.1e-07 Score=83.80 Aligned_cols=185 Identities=9% Similarity=-0.000 Sum_probs=113.7
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCh--hhHHHH
Q 041458 344 ASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPN---EGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQ--EFYKYV 418 (568)
Q Consensus 344 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 418 (568)
..+..+...+.+.|++++|+..|++++...+... ...+.....+.+.|++++|...|+++.+..+.... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3455566677788888888888888877644322 23344466777778888888888877766554322 123333
Q ss_pred HHHHHh------------------cCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041458 419 ITSLCR------------------KGKTYQAFQLLYEMTKYGFTPDSY-TYSSLIRGLCMEGLIEEALEIFVVMEEYDYK 479 (568)
Q Consensus 419 i~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (568)
..++.. .|+.++|+..|+++++. .|+.. .+...... ..+...+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~------ 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRL------ 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHH------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHH------
Confidence 334433 34455555555555543 22221 11110000 0000000
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041458 480 PDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPN----ETTYTILVEGIAHQDELELSAEVLKELQLRQVVS 550 (568)
Q Consensus 480 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 550 (568)
......+...|.+.|++++|+..|+++++. .|+ ...+..+..++.+.|++++|.+.++.+...++.+
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 011134567788999999999999999985 343 2568888999999999999999999999888764
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.91 E-value=3.4e-08 Score=100.45 Aligned_cols=156 Identities=7% Similarity=-0.078 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 041458 391 GKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIF 470 (568)
Q Consensus 391 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 470 (568)
|++++|...|++..+..+. +...|..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444455555444433222 34455556666666666666666666665542 123455566666666666666666666
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHcC
Q 041458 471 VVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQ---DELELSAEVLKELQLRQ 547 (568)
Q Consensus 471 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 547 (568)
++..+.... +...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++.++.+
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 666554322 45566666666666666666666666666541 22455555666666666 66666666666666666
Q ss_pred CCC
Q 041458 548 VVS 550 (568)
Q Consensus 548 ~~~ 550 (568)
+.+
T Consensus 159 p~~ 161 (568)
T 2vsy_A 159 VGA 161 (568)
T ss_dssp CCC
T ss_pred Ccc
Confidence 553
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=3.6e-08 Score=102.10 Aligned_cols=140 Identities=10% Similarity=-0.008 Sum_probs=66.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 463 (568)
...+...|++++|...|+++.+..+. +...|..+..++...|++++|++.|++..+... -+...+..+..++...|++
T Consensus 440 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~ 517 (681)
T 2pzi_A 440 VRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNT 517 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCh
Confidence 33444444444444444444443222 334445555555555555555555555554321 1334455555555555555
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 041458 464 EEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPN-ETTYTILVEGIAH 529 (568)
Q Consensus 464 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 529 (568)
++ .+.|++..+.+.. +...|..+..++.+.|++++|.+.++++.+. .|+ ...+..+..++..
T Consensus 518 ~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 518 DE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLS 580 (681)
T ss_dssp CT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC-
T ss_pred HH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHc
Confidence 55 5555555543322 4445555555555555555555555555442 332 3344444444433
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=1.7e-08 Score=104.49 Aligned_cols=173 Identities=10% Similarity=-0.072 Sum_probs=146.6
Q ss_pred HhCCCHHHHHHHHHHHh--------hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 041458 388 CGVGKVQEAFAIIQSLG--------NKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCM 459 (568)
Q Consensus 388 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 459 (568)
...|++++|.+.+++.. +..+ .+...+..+...+...|++++|++.|++..+... .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 67788999999998887 3322 3556788889999999999999999999998632 267789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 041458 460 EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEV 539 (568)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 539 (568)
.|++++|.+.|++..+.... +...|..+..+|.+.|++++ .+.|+++++.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999976544 67889999999999999999 99999999852 44778999999999999999999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHhhhhcC
Q 041458 540 LKELQLRQVVSESAVERLVMQYDFEG 565 (568)
Q Consensus 540 ~~~~~~~~~~~~~~~~~l~~~~~~~g 565 (568)
++++++.++....+...+...+...|
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHhhcccCcccHHHHHHHHHHHHccC
Confidence 99999999998888888887775433
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.91 E-value=1.2e-06 Score=79.85 Aligned_cols=217 Identities=14% Similarity=0.103 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--ChhhHHHHHHHHHhCCCCCcHHHHHHHHHHH----Hhc---CChH
Q 041458 115 KKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKG--NVGYAMQLVEKMEDYGYPTNTVTYNSLVRGL----CML---GNLN 185 (568)
Q Consensus 115 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~ 185 (568)
++|+++++.++..++. +..+|+.--..+...| +++++++.++.+.... |.+..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4666666666665422 3445666555666666 6677777776666542 33455555544444 333 5666
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC------hHHH
Q 041458 186 QSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVH--AAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGR------TEEA 257 (568)
Q Consensus 186 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~------~~~A 257 (568)
+++++++++.+... -+..+|+--.-.+.+.+.++ ++++.++++++.... |...|+.-...+.+.+. ++++
T Consensus 128 ~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 66666666666532 25556665555555666655 666666666665332 55556555555555454 6666
Q ss_pred HHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHH-HHHHHHHhccCC--CCcCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 041458 258 IRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEE-ANELLAEMDGGD--RSPTIVTYNILIGSLAYHGKTDHALKVLDEM 334 (568)
Q Consensus 258 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (568)
++.++.+....+. |...|+.+-..+.+.|+..+ +..+..++...+ -+.+...+..+...|.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6666666655333 55666666666666555333 444555444322 1234556666666666667777777777666
Q ss_pred HH
Q 041458 335 VK 336 (568)
Q Consensus 335 ~~ 336 (568)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.90 E-value=2e-08 Score=84.70 Aligned_cols=158 Identities=13% Similarity=0.062 Sum_probs=91.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCC
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRG-LCMEGL 462 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~ 462 (568)
...+...|++++|...|++..+..+. +...+..+...+...|++++|+..+++..+. .|+...+..+... +...+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhcc
Confidence 44445555555555555554443322 4455666666777777777777777666543 2233222221111 112122
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 041458 463 IEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEGIAHQDELELSAEVLK 541 (568)
Q Consensus 463 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 541 (568)
..+|...+++..+..+. +...+..+...+...|++++|...++++++....+ +...+..+...+...|+.++|...++
T Consensus 90 ~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 90 ESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp SCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred cchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 23456667766654333 56677777777777777777777777777642211 24566777777777777777777777
Q ss_pred HHHH
Q 041458 542 ELQL 545 (568)
Q Consensus 542 ~~~~ 545 (568)
+.+.
T Consensus 169 ~al~ 172 (176)
T 2r5s_A 169 RQLY 172 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.90 E-value=1.2e-07 Score=82.25 Aligned_cols=111 Identities=17% Similarity=0.116 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHCCC
Q 041458 136 YTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNS----------------LVRGLCMLGNLNQSLQFLDRLIQKGL 199 (568)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~~~ 199 (568)
+......+...|++++|+..|++..+.. |.+...|.. +..+|.+.|++++|...|++..+..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 3344456677888888888888877642 223444444 4555555555555555555555442
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 041458 200 VPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLC 249 (568)
Q Consensus 200 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 249 (568)
+.+...+..+...+...|++++|...|++.++.. +.+...+..+...|.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYY 133 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 1144455555555555555555555555555442 223444444444443
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=7e-08 Score=75.89 Aligned_cols=116 Identities=11% Similarity=0.004 Sum_probs=94.7
Q ss_pred CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 041458 443 FTPD-SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYT 521 (568)
Q Consensus 443 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 521 (568)
+.|+ ...+......|.+.|++++|.+.|++..+..+. +...|..+..+|.+.|++++|++.+++.++.+ +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 3443 345677788888999999999999888876544 77888888899999999999999999988852 44678888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHh
Q 041458 522 ILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQ 560 (568)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 560 (568)
.+..++...|++++|.+.+++.++.+|.+..+...+...
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888999999999999999999999999988887777654
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.84 E-value=6.7e-08 Score=81.36 Aligned_cols=82 Identities=13% Similarity=0.042 Sum_probs=64.6
Q ss_pred ChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChHHHHHH
Q 041458 427 KTYQAFQLLYEMTKYGFTP-DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKP-DVDNFNALLLGLCKSRRTDLSLEV 504 (568)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~ 504 (568)
...+|+..+++..+. .| +...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...
T Consensus 89 ~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 89 AESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp TSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred ccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 334577888887775 33 56788888899999999999999999988765443 356788888999999999999999
Q ss_pred HHHHHH
Q 041458 505 FQMMIE 510 (568)
Q Consensus 505 ~~~m~~ 510 (568)
|++.+.
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.83 E-value=4.1e-07 Score=79.98 Aligned_cols=204 Identities=10% Similarity=-0.042 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCC-c-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc--ccHHH
Q 041458 273 VVSYNILLRSLCMEGRWEEANELLAEMDGGDRS-P-TIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSA--ASYNP 348 (568)
Q Consensus 273 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ 348 (568)
...+..+...+.+.|++++|...|+++.+.... + ....+..+..+|.+.|++++|+..|+++.+..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667777888888888888887754211 1 1346667777888888888888888887765322111 12333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 041458 349 IIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKT 428 (568)
Q Consensus 349 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 428 (568)
+..++...+.. .+... ......+...|+.++|...|+++.+..+... ..+......
T Consensus 84 ~g~~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~-~a~~a~~~l------- 139 (225)
T 2yhc_A 84 RGLTNMALDDS-----ALQGF-----------FGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ-YTTDATKRL------- 139 (225)
T ss_dssp HHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCT-THHHHHHHH-------
T ss_pred HHHHHHhhhhh-----hhhhh-----------hccchhhcCcHHHHHHHHHHHHHHHHCcCCh-hHHHHHHHH-------
Confidence 33333332110 00000 0001122335667777777777766544321 112111000
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHccCChHHHHHHHH
Q 041458 429 YQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKP--DVDNFNALLLGLCKSRRTDLSLEVFQ 506 (568)
Q Consensus 429 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~ 506 (568)
..+...+. .....+...+.+.|++++|...|+.+.+..+.. ....+..+..+|.+.|+.++|.+.++
T Consensus 140 ---~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 140 ---VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK 208 (225)
T ss_dssp ---HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 00000000 011244566667777777777777776532221 12456667777777777777777777
Q ss_pred HHHHC
Q 041458 507 MMIEK 511 (568)
Q Consensus 507 ~m~~~ 511 (568)
.+...
T Consensus 209 ~l~~~ 213 (225)
T 2yhc_A 209 IIAAN 213 (225)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 76664
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=1.2e-07 Score=88.01 Aligned_cols=199 Identities=10% Similarity=-0.011 Sum_probs=111.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHH
Q 041458 76 DHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQL 155 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 155 (568)
.|++.+|..++++..+... .. + +...++++.|...|+.+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 5677788888877655311 11 0 11146677777666654 3456667777777777
Q ss_pred HHHHHhC----CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--C-CC--CHhhHHHHHHHHHHcCCHHHHHHH
Q 041458 156 VEKMEDY----GYPT-NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKG--L-VP--NAFTYSFLLEAAYKERGVHAAMKL 225 (568)
Q Consensus 156 ~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~-~~--~~~~~~~li~~~~~~~~~~~a~~~ 225 (568)
|.+..+. +-+. -..+|+.+...|.+.|++++|...|++..+.- . .+ -..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7766532 1110 13466777777777778877777777665421 0 11 12345555556655 777777776
Q ss_pred HHHHHHcCCCC-----CHhhHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCCC-hhHHHHHHHHHHcCCCHHHHHHH
Q 041458 226 LDDIIAKGGKP-----NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK----GFEPN-VVSYNILLRSLCMEGRWEEANEL 295 (568)
Q Consensus 226 ~~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 295 (568)
|++.++..... ...+++.+...|.+.|++++|+..|++.... +..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66655431100 1345556666666667777776666665542 11111 12344445555556666666666
Q ss_pred HHHhc
Q 041458 296 LAEMD 300 (568)
Q Consensus 296 ~~~~~ 300 (568)
|++..
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66655
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=1.2e-07 Score=86.91 Aligned_cols=167 Identities=10% Similarity=-0.007 Sum_probs=123.9
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHH-H
Q 041458 95 KPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYN-S 173 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ 173 (568)
+.+...+..+...+.+.|++++|...|+++.+... .+...+..+...+.+.|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 44566677778888889999999999998887643 266778888888889999999999988887643 3433322 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcC
Q 041458 174 LVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGK-PNLVSYNVLLTGLCKEG 252 (568)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g 252 (568)
....+.+.++.++|.+.+++..+.. +.+...+..+...+...|++++|...|+++++.... .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3334666777788888888887763 336778888888888888888888888888876332 12567788888888888
Q ss_pred ChHHHHHHHHHhh
Q 041458 253 RTEEAIRFFRDLP 265 (568)
Q Consensus 253 ~~~~A~~~~~~~~ 265 (568)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888888877654
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.81 E-value=5.3e-08 Score=79.40 Aligned_cols=139 Identities=14% Similarity=0.002 Sum_probs=104.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 041458 390 VGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEI 469 (568)
Q Consensus 390 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 469 (568)
.|++++|+..++......+. +...+-.+...|.+.|++++|++.|++.++... -+..+|..+..+|...|++++|...
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHHH
Confidence 45566666666666554222 334566788889999999999999999988632 2577899999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041458 470 FVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEV-FQMMIEKGQMPNETTYTILVEGIAHQDE 532 (568)
Q Consensus 470 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 532 (568)
|++..+..+. +...|..+...|.+.|+.++|.+. ++++.+.. +-+..+|......+...|+
T Consensus 88 ~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 88 YRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 9999876544 678899999999999998876655 58888742 3366777776666666664
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.80 E-value=1.4e-07 Score=86.52 Aligned_cols=84 Identities=18% Similarity=0.089 Sum_probs=36.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChHHHH
Q 041458 424 RKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKP-DVDNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 424 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~ 502 (568)
..++.++|...+++..+.. +.+...+..+...+...|++++|.+.|+++.+..... +...+..++..+...|+.++|.
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 3344444444444444431 1133444444444555555555555554444332110 1334444444444444444444
Q ss_pred HHHHHH
Q 041458 503 EVFQMM 508 (568)
Q Consensus 503 ~~~~~m 508 (568)
..+++.
T Consensus 276 ~~~r~a 281 (287)
T 3qou_A 276 SXYRRQ 281 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=2.1e-07 Score=94.67 Aligned_cols=155 Identities=14% Similarity=0.027 Sum_probs=119.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHH
Q 041458 76 DHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQL 155 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 155 (568)
.|++++|+..|++.++.. +.+...+..+...+.+.|++++|.+.|++..+... .+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999999988763 34688899999999999999999999999998753 3678899999999999999999999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc---CCHHHHHHHHHHHHHc
Q 041458 156 VEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKE---RGVHAAMKLLDDIIAK 232 (568)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~ 232 (568)
+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998863 4568899999999999999999999999998864 33678888899999999 9999999999999887
Q ss_pred CC
Q 041458 233 GG 234 (568)
Q Consensus 233 ~~ 234 (568)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.77 E-value=4.3e-07 Score=79.04 Aligned_cols=87 Identities=5% Similarity=-0.147 Sum_probs=40.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 463 (568)
...+...|++++|...|++.. .++...|..+...+...|++++|++.+++..+.. +.+...+..+..++...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 334444455555555554442 1233444444444555555555555555444432 11333444444445555555
Q ss_pred HHHHHHHHHHHh
Q 041458 464 EEALEIFVVMEE 475 (568)
Q Consensus 464 ~~a~~~~~~m~~ 475 (568)
++|.+.|++..+
T Consensus 88 ~~A~~~~~~al~ 99 (213)
T 1hh8_A 88 DLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=1.3e-07 Score=87.63 Aligned_cols=222 Identities=11% Similarity=0.022 Sum_probs=131.5
Q ss_pred CCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 041458 286 EGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY-HGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVK 364 (568)
Q Consensus 286 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 364 (568)
.|++++|.+++++..+.. +. .+.. .+++++|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 466777777777665431 11 0222 46777777777654 346777888888888
Q ss_pred HHHHHhhCCCCC-C----hhhHHH-HHHHHhCCCHHHHHHHHHHHhhCC---CCCC--hhhHHHHHHHHHhcCChhHHHH
Q 041458 365 CLDQMFHRRCKP-N----EGTYNG-LAMLCGVGKVQEAFAIIQSLGNKQ---NSSP--QEFYKYVITSLCRKGKTYQAFQ 433 (568)
Q Consensus 365 ~~~~~~~~~~~~-~----~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~li~~~~~~g~~~~A~~ 433 (568)
.+.+........ + ...+.. ...+...|++++|...|++..... ..+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 888776532111 1 112222 456666788888888887664421 1111 2456666677766 88888888
Q ss_pred HHHHHHHCCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHccCChHHHHH
Q 041458 434 LLYEMTKYGFTP-D----SYTYSSLIRGLCMEGLIEEALEIFVVMEEY----DYKPD-VDNFNALLLGLCKSRRTDLSLE 503 (568)
Q Consensus 434 ~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~ 503 (568)
.|++..+..... + ..++..+...|...|++++|.+.|++..+. +..+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 887766531110 1 345667777777888888888888777642 11111 2245556666677788888888
Q ss_pred HHHHHHHCCCCCC------HHHHHHHHHHHHhcCChhHHHH
Q 041458 504 VFQMMIEKGQMPN------ETTYTILVEGIAHQDELELSAE 538 (568)
Q Consensus 504 ~~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~a~~ 538 (568)
.+++.. . .|+ ...+..++.++ ..|+.+...+
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 888777 3 221 12344445544 4566666555
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.76 E-value=2.6e-06 Score=78.52 Aligned_cols=228 Identities=11% Similarity=0.022 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhC-C-CHHHHHHHH
Q 041458 324 TDHALKVLDEMVKGRFRPSAASYNPIIARLCSEG-KVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGV-G-KVQEAFAII 400 (568)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~a~~~~ 400 (568)
.++|++++++++..+.. +..+|+.--..+...| .+++++..++.++...++.......-...+... + ++++++..+
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 34455555555543322 3333444444444444 355555555555544333222222211111221 3 455666666
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-------HHH
Q 041458 401 QSLGNKQNSSPQEFYKYVITSLCRKGKTY--------QAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGL-------IEE 465 (568)
Q Consensus 401 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~ 465 (568)
+.+.+..+. +...|+.-...+.+.|..+ ++++.++++++..+. |...|+.....+.+.+. +++
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHH
Confidence 666655443 5556665555555555555 788888888876443 66777777777777665 678
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh--------------------HHHHHHHHHHHHCC-----CCCCHHHH
Q 041458 466 ALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRT--------------------DLSLEVFQMMIEKG-----QMPNETTY 520 (568)
Q Consensus 466 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~g-----~~p~~~~~ 520 (568)
++++++++....+. |...|+-+-..+.+.|+. ....+...++...+ -.++...+
T Consensus 227 ELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 88888888766555 777787776666666653 22333333333221 13577888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH-HcCCCCHHHHH
Q 041458 521 TILVEGIAHQDELELSAEVLKELQ-LRQVVSESAVE 555 (568)
Q Consensus 521 ~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~ 555 (568)
..++..|...|+.++|.++++.+. +.++.....-.
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 888899998999999999999986 55655444433
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.76 E-value=3.6e-07 Score=71.41 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=76.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041458 447 SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEG 526 (568)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 526 (568)
...+..+...+...|++++|.++++++.+.... +...+..+...+...|++++|..+++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 345566666666677777777777666654322 45566666777777777777777777776642 3356666677777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhc
Q 041458 527 IAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFE 564 (568)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 564 (568)
+...|++++|.++++++.+..+.+......+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 77777777777777777777777666666666555443
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.71 E-value=6.5e-06 Score=75.63 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=113.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCCh-----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----hhhHHHH
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQ-----EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFT-PD----SYTYSSL 453 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l 453 (568)
+..+...|++++|...+++........+. ..+..+...+...|++++|+..+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 44566677777777777776654322111 12334566666778889999999988874322 22 2257888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----C-CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCC-HHHHHH
Q 041458 454 IRGLCMEGLIEEALEIFVVMEE----Y-DYKP-DVDNFNALLLGLCKSRRTDLSLEVFQMMIEK----GQMPN-ETTYTI 522 (568)
Q Consensus 454 ~~~~~~~g~~~~a~~~~~~m~~----~-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ 522 (568)
...|...|++++|..+|+++.+ . +..+ ...++..+...|.+.|++++|.+.+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 8889999999999999988873 1 1122 2336788888999999999999998887752 22222 577888
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHHH
Q 041458 523 LVEGIAHQDE-LELSAEVLKELQL 545 (568)
Q Consensus 523 ll~~~~~~g~-~~~a~~~~~~~~~ 545 (568)
+..++.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888999994 6999999888765
No 122
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.68 E-value=9.9e-06 Score=74.32 Aligned_cols=197 Identities=10% Similarity=0.035 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCC--CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-hhHHHHHH
Q 041458 359 VDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVG--KVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGK-TYQAFQLL 435 (568)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~ 435 (568)
+++++.+++.++...++.......-...+...+ .+++++..+..+.+.++. +...|+.-...+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555555555543322222222222233333 356666666666665444 55667766666666676 47778888
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc------
Q 041458 436 YEMTKYGFTPDSYTYSSLIRGLCME--------------GLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKS------ 495 (568)
Q Consensus 436 ~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~------ 495 (568)
.++++..+. |...|+.....+.+. +.++++++++.......+. |...|+-+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcccc
Confidence 777776433 556666655555443 4578888888888866554 777777665555555
Q ss_pred -----CChHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhh
Q 041458 496 -----RRTDLSLEVFQMMIEKGQMPNETTYTILVE-----GIAHQDELELSAEVLKELQLRQVVSESAVERLVMQY 561 (568)
Q Consensus 496 -----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 561 (568)
+.++++++.++++.+. .||. .|..+.. +....|..++...++.++++.+|....-+..+...+
T Consensus 247 ~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 4578999999999984 5654 3433222 222467888999999999999999777666665543
No 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.68 E-value=4.1e-07 Score=72.15 Aligned_cols=117 Identities=10% Similarity=-0.004 Sum_probs=70.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041458 447 SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEG 526 (568)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 526 (568)
...+..+...+...|++++|.+.|++..+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 344555556666666666666666666544322 45566666666666666666666666666541 3345566666666
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcC
Q 041458 527 IAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDFEG 565 (568)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 565 (568)
+...|++++|.+.+++..+..+.+......+...+...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 666666666666666666666666566666655555443
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.68 E-value=7.6e-07 Score=72.15 Aligned_cols=103 Identities=15% Similarity=0.066 Sum_probs=83.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041458 447 SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEG 526 (568)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 526 (568)
...+..+...+...|++++|.+.|++..+..+. +...|..+..+|...|++++|++.|+++.+.. +.+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 446777788888889999999999888876544 77888888888889999999999999888852 3356788888888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 527 IAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
+...|++++|.+.++++++..+.++
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8899999999999999888886643
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.68 E-value=1.5e-05 Score=73.39 Aligned_cols=219 Identities=12% Similarity=0.125 Sum_probs=125.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-ChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-C-ChHHHHH
Q 041458 113 KMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKG-NVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCML-G-NLNQSLQ 189 (568)
Q Consensus 113 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~a~~ 189 (568)
..++|+++++.++..+.. +..+|+.--..+...| +++++++.++.+.... |.+..+|+.-...+.+. + +++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 345677777777665422 4455666655666666 4777777777776653 44666666666655555 5 6677777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-------h
Q 041458 190 FLDRLIQKGLVPNAFTYSFLLEAAYKERGVH--------AAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGR-------T 254 (568)
Q Consensus 190 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-------~ 254 (568)
+++++.+... .|...|+--.-...+.+.++ ++++.++++++.... |...|+.....+.+.+. +
T Consensus 147 ~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 147 YIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHH
Confidence 7777766532 25556655444444444333 677777777766333 66667666666666554 5
Q ss_pred HHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCH--------------------HHHHHHHHHhccCC-----CCcCHh
Q 041458 255 EEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRW--------------------EEANELLAEMDGGD-----RSPTIV 309 (568)
Q Consensus 255 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~~~~ 309 (568)
+++++.++++....+. |...|+-+-..+.+.|.. .+..+...++...+ -.+...
T Consensus 225 ~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 225 QDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 6777777666655333 556666555555554442 22222222222221 124556
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 310 TYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
.+..+++.|...|+.++|.++++.+.+
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 666777777777777777777777654
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.63 E-value=2.6e-06 Score=74.04 Aligned_cols=127 Identities=13% Similarity=-0.054 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHh
Q 041458 241 YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAY 320 (568)
Q Consensus 241 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (568)
+..+...+...|++++|...|++.. .|+...+..+...|...|++++|...+++..... +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3344555566666666666666553 3455666666666666666666666666665543 3345566666666666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCc----------------ccHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 041458 321 HGKTDHALKVLDEMVKGRFRPSA----------------ASYNPIIARLCSEGKVDLVVKCLDQMFHRR 373 (568)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 373 (568)
.|++++|.+.|++..+.... +. ..+..+..++.+.|++++|...+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 67777776666666654221 11 445556666666777777777776666554
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=6.1e-06 Score=75.79 Aligned_cols=162 Identities=12% Similarity=0.041 Sum_probs=81.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCCHh----hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HhhHHH
Q 041458 174 LVRGLCMLGNLNQSLQFLDRLIQKGL-VPNAF----TYSFLLEAAYKERGVHAAMKLLDDIIAKGGK-PN----LVSYNV 243 (568)
Q Consensus 174 li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 243 (568)
.+..+...|++++|.+++++..+... .|+.. .+..+...+...+++++|...|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35556666666667666666655321 11111 1222344444455666666666666553211 11 124556
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhC-----CCCCC-hhHHHHHHHHHHcCCCHHHHHHHHHHhccC----CCCc-CHhhHH
Q 041458 244 LLTGLCKEGRTEEAIRFFRDLPSK-----GFEPN-VVSYNILLRSLCMEGRWEEANELLAEMDGG----DRSP-TIVTYN 312 (568)
Q Consensus 244 ll~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~ 312 (568)
+...|...|++++|...|+++.+. +..+. ..++..+...|.+.|++++|...+++..+. +..+ -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 666666666666666666665421 11111 224555566666666666666666554321 1111 134555
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHH
Q 041458 313 ILIGSLAYHGK-TDHALKVLDEMV 335 (568)
Q Consensus 313 ~l~~~~~~~g~-~~~a~~~~~~~~ 335 (568)
.+..+|.+.|+ .++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 55566666663 366665555543
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.61 E-value=1.4e-06 Score=68.70 Aligned_cols=114 Identities=9% Similarity=-0.084 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIA 528 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 528 (568)
.+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 3444444455555555555555554433211 34445555555555555555555555555431 223445555555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhhc
Q 041458 529 HQDELELSAEVLKELQLRQVVSESAVERLVMQYDFE 564 (568)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 564 (568)
..|++++|.+.++++.+..+.+......+...+...
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 555555555555555555555555555554444433
No 129
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.61 E-value=2.3e-07 Score=75.34 Aligned_cols=99 Identities=17% Similarity=0.040 Sum_probs=56.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIA 528 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 528 (568)
.+..+...+...|++++|...|+......+. +...|..+..+|...|++++|.+.+++++... +.+...+..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 4445555555666666666666655544322 45555556666666666666666666665531 224455555556666
Q ss_pred hcCChhHHHHHHHHHHHcCCC
Q 041458 529 HQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~~~ 549 (568)
..|++++|.+.+++.++..+.
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHHCcC
Confidence 666666666666666655554
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.60 E-value=1.7e-06 Score=71.65 Aligned_cols=130 Identities=10% Similarity=0.006 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
..+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+.... +...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 446677788888999999999999888753 235778888889999999999999999998875433 677888899999
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHHHH
Q 041458 493 CKSRRTDLSLEVFQMMIEKGQMPNETTYTI--LVEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 545 (568)
...|++++|.+.++++.+.. +.+...+.. ....+...|++++|.+.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999998852 335555533 33447778999999998887643
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.60 E-value=1e-06 Score=71.45 Aligned_cols=103 Identities=13% Similarity=0.079 Sum_probs=85.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLG 491 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 491 (568)
...+..+...+.+.|++++|+..|++..+..+ .+...|..+..+|...|++++|.+.|++..+..+. +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 34567777888899999999999999887632 25778889999999999999999999999876544 67888899999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHH
Q 041458 492 LCKSRRTDLSLEVFQMMIEKGQMPNET 518 (568)
Q Consensus 492 ~~~~g~~~~a~~~~~~m~~~g~~p~~~ 518 (568)
|...|++++|.+.|++.++. .|+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 99999999999999999884 56654
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.59 E-value=6.9e-07 Score=75.14 Aligned_cols=125 Identities=9% Similarity=0.031 Sum_probs=86.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHccCCh--HH
Q 041458 424 RKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLG-LCKSRRT--DL 500 (568)
Q Consensus 424 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 500 (568)
..|++++|+..+++..+.. +.+...+..+...|...|++++|...|++..+.... +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 4567777777777776653 235567777777788888888888888877754333 56667777777 6677777 88
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 501 SLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 501 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
|.+.++++.+.. +.+...+..+...+...|++++|...++++++..+.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 888888877752 33567777777778888888888888888888777743
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=1.2e-06 Score=68.69 Aligned_cols=108 Identities=17% Similarity=0.066 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
..+......|.+.|++++|++.|++.++.. +.+...|..+..++...|++++|.+.+++..+.+.. +...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 446667888999999999999999988763 236778889999999999999999999999876544 678899999999
Q ss_pred HccCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 041458 493 CKSRRTDLSLEVFQMMIEKGQMP-NETTYTILV 524 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll 524 (568)
...|++++|.+.|++.++. .| +...+..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV--DPSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CcCCHHHHHHHH
Confidence 9999999999999999985 45 445554443
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.58 E-value=6.5e-06 Score=75.61 Aligned_cols=127 Identities=15% Similarity=0.089 Sum_probs=74.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC---CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--ChhhHH
Q 041458 418 VITSLCRKGKTYQAFQLLYEMTKYGF---TPD--SYTYSSLIRGLCMEGLIEEALEIFVVMEE---Y-DYKP--DVDNFN 486 (568)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~-~~~p--~~~~~~ 486 (568)
+...+...|++++|+..+++..+... .+. ..+++.+...|...|++++|..++++..+ . +..+ ...++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 34445556666666666666654211 111 23566667777777777777777766652 1 1111 114666
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 041458 487 ALLLGLCKSRRTDLSLEVFQMMIEK----GQMP-NETTYTILVEGIAHQDELELS-AEVLKELQ 544 (568)
Q Consensus 487 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~ 544 (568)
.+...|...|++++|.+.+++..+. +... -..+|..+...+...|++++| ..++++..
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6777777777777777777766542 1111 145666677777777777777 66666654
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=5.6e-07 Score=82.11 Aligned_cols=99 Identities=12% Similarity=0.022 Sum_probs=74.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
+...+..+...+.+.|++++|+..|+.+.+... .+...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 455667777778888888888888888877542 266777777888888888888888888877653 446777778888
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 041458 177 GLCMLGNLNQSLQFLDRLIQK 197 (568)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~ 197 (568)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888777654
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.3e-06 Score=68.67 Aligned_cols=109 Identities=11% Similarity=0.007 Sum_probs=62.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIA 528 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 528 (568)
.+..+...+...|++++|.+.|++..+.... +...|..+..+|.+.|++++|++.+++.++.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3445555556666666666666665544322 45556666666666666666666666666541 224555666666666
Q ss_pred hcCChhHHHHHHHHHHHcC------CCCHHHHHHHHH
Q 041458 529 HQDELELSAEVLKELQLRQ------VVSESAVERLVM 559 (568)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~ 559 (568)
..|++++|...+++.++.+ +.+......+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 6666666666666666666 544444444433
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=2.3e-06 Score=66.75 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLG 491 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 491 (568)
...|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|..+++++.+.... +...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 4567778888999999999999999988753 335678888999999999999999999998865433 67788899999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 041458 492 LCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQ 530 (568)
Q Consensus 492 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 530 (568)
+...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 999999999999999998752 33556666665555443
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.54 E-value=3.5e-06 Score=69.67 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=81.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041458 99 VQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGL 178 (568)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 178 (568)
..+..+...+...|+++.|...|+...+... .+..++..+..++...|++++|.+.+++..+.. +.+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3456666677777888888888877776532 256667777777777777777777777776642 34566677777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHH--HHHHHHHcCCHHHHHHHHHHH
Q 041458 179 CMLGNLNQSLQFLDRLIQKGLVPNAFTYSF--LLEAAYKERGVHAAMKLLDDI 229 (568)
Q Consensus 179 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~~~~~~~~a~~~~~~~ 229 (568)
...|++++|.+.|++..+... .+...+.. ....+.+.|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 777777777777777766532 13333322 222355556666666666554
No 139
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=2.9e-06 Score=65.39 Aligned_cols=110 Identities=11% Similarity=-0.001 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI 527 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 527 (568)
..+..+...+...|++++|.+.++...+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34555566666666666666666666644322 55566666666666677777777776666642 23456666666667
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 041458 528 AHQDELELSAEVLKELQLRQVVSESAVERLVM 559 (568)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 559 (568)
...|++++|.+.+++..+.++.++.....+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 77777777777777777766666655555443
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.53 E-value=8.3e-07 Score=76.47 Aligned_cols=158 Identities=9% Similarity=-0.081 Sum_probs=106.1
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCH
Q 041458 389 GVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKY----GFTP-DSYTYSSLIRGLCMEGLI 463 (568)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 463 (568)
..|++++|.+.++.+.. .+......+..+...+...|++++|...+++..+. +..| ...++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35666777764444433 22234566777888888888888888888877651 1121 245677788888889999
Q ss_pred HHHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHccCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCC
Q 041458 464 EEALEIFVVMEEY----DYKP--DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKG---QMPN--ETTYTILVEGIAHQDE 532 (568)
Q Consensus 464 ~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~g~ 532 (568)
++|.+.+++..+. +-.| ....+..+...+...|++++|.+.+++..+.. -.+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999988877642 2111 23457778888888999999999988877421 1111 2345677788888999
Q ss_pred hhHHHHHHHHHHHcC
Q 041458 533 LELSAEVLKELQLRQ 547 (568)
Q Consensus 533 ~~~a~~~~~~~~~~~ 547 (568)
+++|.+.+++..+..
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888876543
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.52 E-value=5.8e-07 Score=81.98 Aligned_cols=195 Identities=12% Similarity=0.022 Sum_probs=108.3
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041458 132 DASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLE 211 (568)
Q Consensus 132 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 211 (568)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44566677777778888888888888777652 3367777778888888888888888888877653 235667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHH
Q 041458 212 AAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEE 291 (568)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 291 (568)
++...|++++|...|++..+.... +...+...+....+. .++.... .........+......+.. + ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKRWN-SIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHHHH-HHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHHHH-HHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 777888888888888777654210 100111111111111 1111111 1111222223333333322 2 2566777
Q ss_pred HHHHHHHhccCCCCcCHhhHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 041458 292 ANELLAEMDGGDRSPTIVTYNILIGSLAYH-GKTDHALKVLDEMVK 336 (568)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 336 (568)
|.+.+++..+.. +.+......+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777776665542 22233333333334443 456667777766554
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.52 E-value=6.3e-07 Score=79.76 Aligned_cols=139 Identities=7% Similarity=-0.120 Sum_probs=95.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHH
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPD--VDNFNALLLGL 492 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~ 492 (568)
+..+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...... .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 444566777788888888888777654 3443355556667788888888888887554431 111 23566777788
Q ss_pred HccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHH
Q 041458 493 CKSRRTDLSLEVFQMMIEKGQMPN--ETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERL 557 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 557 (568)
...|++++|+..|++.......|. ...+.....++.+.|+.++|..+|+++...++. ..+...|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 888888888888888875332243 345566677788888888888888888888887 5544433
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.52 E-value=1.1e-06 Score=73.79 Aligned_cols=124 Identities=10% Similarity=0.080 Sum_probs=100.8
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHhcCCh-
Q 041458 72 TRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNC-LCKKGNV- 149 (568)
Q Consensus 72 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~- 149 (568)
.+...|++++|+..++..++.. +.+...|..+...+...|++++|+..|+.+.+... .+...+..+..+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcc
Confidence 3566889999999999988764 45788899999999999999999999999987643 367778888888 7788998
Q ss_pred -hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 041458 150 -GYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKG 198 (568)
Q Consensus 150 -~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 198 (568)
++|...|++..+.. +.+...+..+...|...|++++|...|++..+..
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999998763 4467888899999999999999999999998863
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.51 E-value=2.1e-06 Score=80.49 Aligned_cols=131 Identities=13% Similarity=-0.033 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD--------------SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDY 478 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 478 (568)
..+..+...+.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|.+.+++..+...
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4566677777788888888888888776532211 36788888888888999999999988887644
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 041458 479 KPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELS-AEVLKELQL 545 (568)
Q Consensus 479 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 545 (568)
. +...|..+..+|...|++++|.+.|+++++.. +.+...+..+..++...|+.++| ...+++|+.
T Consensus 228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 67788888888888999999999998888752 33667788888888888888887 456666654
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=2.5e-06 Score=67.52 Aligned_cols=118 Identities=14% Similarity=0.014 Sum_probs=94.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLL 490 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 490 (568)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 44667888888999999999999999988753 236778888899999999999999999998875433 6788889999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQD 531 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 531 (568)
++.+.|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 9999999999999999998752 224566666666666554
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.50 E-value=9e-07 Score=78.78 Aligned_cols=135 Identities=7% Similarity=-0.048 Sum_probs=96.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcC
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD--SYTYSSLIRGLCMEG 461 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g 461 (568)
...+...|++++|.++|..+...++ +....-.+...+.+.+++++|+..|+...+.. .|. ...+..+..++...|
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCC
Confidence 5567778888888888888776543 22244445557788899999999997554421 111 236777888899999
Q ss_pred CHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041458 462 LIEEALEIFVVMEEYDYKPD--VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTIL 523 (568)
Q Consensus 462 ~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 523 (568)
++++|++.|++.......|. .........++.+.|+.++|..+|+++... .|+...+..|
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 99999999998875433243 346677778888999999999999999885 5664444433
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=3.7e-06 Score=66.17 Aligned_cols=119 Identities=12% Similarity=-0.002 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLG 491 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 491 (568)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 4557777888889999999999999888753 235778888889999999999999999998875433 67788889999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 041458 492 LCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDEL 533 (568)
Q Consensus 492 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 533 (568)
+...|++++|.+.+++..+.. +.+...+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 999999999999999998852 34677787888888777764
No 148
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.49 E-value=1.7e-05 Score=72.78 Aligned_cols=59 Identities=12% Similarity=-0.096 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCC----CCC-ChhHHHHHHHHHHcCCCHHHH-HHHHHH
Q 041458 240 SYNVLLTGLCKEGRTEEAIRFFRDLPSKG----FEP-NVVSYNILLRSLCMEGRWEEA-NELLAE 298 (568)
Q Consensus 240 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~a-~~~~~~ 298 (568)
+++.+...|.+.|++++|+..+++..+.. ... -..+|..+..+|.+.|++++| ...+++
T Consensus 198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 44444455555555555555554443220 000 033444455555555555555 444443
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.48 E-value=1.5e-06 Score=74.76 Aligned_cols=154 Identities=12% Similarity=0.031 Sum_probs=81.1
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHhcCCh
Q 041458 75 RDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSS----GII-PDASSYTYLVNCLCKKGNV 149 (568)
Q Consensus 75 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~ 149 (568)
..|++++|...++.+.. .+......+..+...+...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 46777777775544433 22335566777777777777877777777776651 111 1233455666666677777
Q ss_pred hhHHHHHHHHHhC----CCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHHcCC
Q 041458 150 GYAMQLVEKMEDY----GYP--TNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL-VPN----AFTYSFLLEAAYKERG 218 (568)
Q Consensus 150 ~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~~~ 218 (568)
++|.+.+++..+. +-. ....++..+...+...|++++|.+.+++..+... ..+ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777666665432 101 1133455566666666666666666665543100 001 1123344444455555
Q ss_pred HHHHHHHHHHH
Q 041458 219 VHAAMKLLDDI 229 (568)
Q Consensus 219 ~~~a~~~~~~~ 229 (568)
+++|.+.+++.
T Consensus 163 ~~~A~~~~~~a 173 (203)
T 3gw4_A 163 LLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=6e-06 Score=66.71 Aligned_cols=114 Identities=12% Similarity=-0.074 Sum_probs=76.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 041458 446 DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPD----VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYT 521 (568)
Q Consensus 446 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 521 (568)
+...+..+...+...|++++|.+.|++..+.. |+ ...|..+...|...|++++|.+.+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34456666666677777777777777766542 33 4566667777777777777777777776641 33566666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhh
Q 041458 522 ILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYD 562 (568)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (568)
.+..++...|++++|.+.+++.++..+.+......+.....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777777777777777777777777776666665555443
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.46 E-value=2.2e-06 Score=68.99 Aligned_cols=94 Identities=14% Similarity=-0.048 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK 494 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 494 (568)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..+..+. +...+..+..+|..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3334444455555555555555544432 113444444555555555555555555555443322 34444445555555
Q ss_pred cCChHHHHHHHHHHHH
Q 041458 495 SRRTDLSLEVFQMMIE 510 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~~ 510 (568)
.|++++|.+.|++..+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555444
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.44 E-value=1.8e-06 Score=69.92 Aligned_cols=99 Identities=11% Similarity=-0.059 Sum_probs=80.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLL 490 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 490 (568)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..+..+. +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 34556667788888899999999999888753 236777888888899999999999999988876444 6778888888
Q ss_pred HHHccCChHHHHHHHHHHHHC
Q 041458 491 GLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~ 511 (568)
+|...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988874
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.44 E-value=3e-06 Score=64.57 Aligned_cols=102 Identities=10% Similarity=0.032 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 041458 447 SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP--NETTYTILV 524 (568)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll 524 (568)
...+..+...+...|++++|...+++..+.... +...|..+...+...|++++|.+.+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 445666667777777777777777777654333 56667777777777777777777777777642 23 466777777
Q ss_pred HHHHhc-CChhHHHHHHHHHHHcCCCC
Q 041458 525 EGIAHQ-DELELSAEVLKELQLRQVVS 550 (568)
Q Consensus 525 ~~~~~~-g~~~~a~~~~~~~~~~~~~~ 550 (568)
..+... |++++|.+.++++....+.+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 777777 77788877777777776653
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.43 E-value=3.1e-06 Score=70.08 Aligned_cols=99 Identities=15% Similarity=0.043 Sum_probs=68.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLL 490 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 490 (568)
+...|..+...+.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|...|++..+.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556666777777777777777777777653 225566777777777777777777777777765433 5667777777
Q ss_pred HHHccCChHHHHHHHHHHHHC
Q 041458 491 GLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~ 511 (568)
+|...|++++|.+.|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777777663
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.43 E-value=3.4e-06 Score=66.25 Aligned_cols=97 Identities=11% Similarity=0.084 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 041458 450 YSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKG--QMPN----ETTYTIL 523 (568)
Q Consensus 450 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~~~l 523 (568)
+..+...+.+.|++++|++.|++..+..+. +...|..+..+|.+.|++++|++.+++.++.+ ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 334444444445555555555444443222 34444444445555555555555554444320 0011 1234444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcC
Q 041458 524 VEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
..++...|++++|.+.+++.++..
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC
Confidence 445555555555555555555443
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.41 E-value=5.3e-06 Score=66.07 Aligned_cols=97 Identities=14% Similarity=-0.101 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLG 491 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 491 (568)
...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.... +...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 3445555555555555555555555555432 113444555555555555555555555555543322 44455555555
Q ss_pred HHccCChHHHHHHHHHHHH
Q 041458 492 LCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 492 ~~~~g~~~~a~~~~~~m~~ 510 (568)
|...|++++|.+.++++.+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555543
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.39 E-value=0.0002 Score=65.63 Aligned_cols=188 Identities=9% Similarity=0.019 Sum_probs=128.8
Q ss_pred ccCChH-HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 041458 75 RDHKLN-DAFLQLERMVSKGHKPDVVQATNLLYDLCKANK----------MKKAIKVMEMMVSSGIIPDASSYTYLVNCL 143 (568)
Q Consensus 75 ~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 143 (568)
+.|.+. +|+.+++.++..++ -+..+|+.--..+...+. +++++.+++.+...++. +..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 345544 79999999988754 366667764444433332 67888899888886543 777888877777
Q ss_pred HhcCC--hhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc----
Q 041458 144 CKKGN--VGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGN-LNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKE---- 216 (568)
Q Consensus 144 ~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---- 216 (568)
.+.++ +++++..++++.+.. +.|..+|+.-.-.+...|. ++++++.++++.+..+. |...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 77774 789999999998764 5588888888888888887 58899999998887543 777777766665554
Q ss_pred ----------CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-----------CChHHHHHHHHHhhhC
Q 041458 217 ----------RGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKE-----------GRTEEAIRFFRDLPSK 267 (568)
Q Consensus 217 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~ 267 (568)
+.++++++.+++.+... +-|...|+-+-..+.+. +.++++++.++++.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 34667777777777663 33666666444444433 2355566666665554
No 158
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.39 E-value=6.1e-06 Score=77.35 Aligned_cols=124 Identities=15% Similarity=0.023 Sum_probs=72.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------------HhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPD--------------ASSYTYLVNCLCKKGNVGYAMQLVEKMEDY 162 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 162 (568)
+...+..+...+.+.|++++|+..|++..+...... ..+|..+..+|.+.|++++|++.|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455677777888888888888888888877542211 245555555555666666666666555554
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 041458 163 GYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAA 222 (568)
Q Consensus 163 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 222 (568)
. +.+..+|..+..+|...|++++|.+.|++..+.. +.+...+..+...+.+.|+.++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 2345555555555555666666666555555542 12344555555555555555544
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.39 E-value=7.6e-06 Score=64.12 Aligned_cols=97 Identities=19% Similarity=0.034 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
..|..+...+.+.|++++|+..|++.++.. +.+...|..+..++...|++++|.+.+++..+.... +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 456677788889999999999999988763 235778889999999999999999999999876544 678888999999
Q ss_pred HccCChHHHHHHHHHHHHC
Q 041458 493 CKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~ 511 (568)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999999998874
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.34 E-value=4.2e-06 Score=65.04 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041458 450 YSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAH 529 (568)
Q Consensus 450 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 529 (568)
+..+...+.+.|++++|...|++..+..+. +...|..+..++...|++++|+..+++.++.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344555566666666666666666654332 55566666666666666666666666666541 2245556666666666
Q ss_pred cCChhHHHHHHHHHHHcCCC
Q 041458 530 QDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~~~ 549 (568)
.|++++|...++++++.++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCcC
Confidence 66666666666666655544
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.34 E-value=1.9e-05 Score=62.01 Aligned_cols=100 Identities=13% Similarity=0.080 Sum_probs=51.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 041458 453 LIRGLCMEGLIEEALEIFVVMEEYDYKPDV---DNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPN---ETTYTILVEG 526 (568)
Q Consensus 453 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~ 526 (568)
+...+...|++++|.+.|+.+.+.... +. ..+..+..++...|++++|...++++.+.. +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 344455555555555555555543221 12 344455555555566666666665555531 112 3445555555
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCHHHH
Q 041458 527 IAHQDELELSAEVLKELQLRQVVSESAV 554 (568)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 554 (568)
+...|++++|...++++++..+.++...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 5566666666666666666555544433
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.33 E-value=9.3e-06 Score=63.69 Aligned_cols=108 Identities=9% Similarity=0.007 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----hhhHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK--PD----VDNFN 486 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~----~~~~~ 486 (568)
..+..+...+.+.|++++|++.|++.++... .+...|..+..+|...|++++|++.+++..+.... ++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4567788889999999999999999988632 25778889999999999999999999988753211 11 23677
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041458 487 ALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTIL 523 (568)
Q Consensus 487 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 523 (568)
.+..++...|++++|++.|++.+.. .||..+...+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 7888899999999999999998874 5776655443
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=2.3e-05 Score=60.07 Aligned_cols=111 Identities=14% Similarity=-0.005 Sum_probs=86.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLG 491 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 491 (568)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 3456677788888999999999999888753 235677888888899999999999999988865433 67788888899
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041458 492 LCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVE 525 (568)
Q Consensus 492 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 525 (568)
+...|++++|.+.+++..+.+ +.+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 114 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 999999999999999988752 234455544433
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.31 E-value=1.1e-05 Score=63.36 Aligned_cols=107 Identities=7% Similarity=-0.005 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----hhhHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK--PD----VDNFN 486 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~----~~~~~ 486 (568)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|..+++...+.... ++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555556666666666666666665542 224445555666666666666666666655532111 11 44555
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 041458 487 ALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTI 522 (568)
Q Consensus 487 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 522 (568)
.+...+...|++++|.+.++++.+. .|+...+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 117 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKK 117 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 5555566666666666666665553 334444333
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.29 E-value=1.2e-05 Score=68.94 Aligned_cols=133 Identities=9% Similarity=-0.086 Sum_probs=89.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD---------------SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDY 478 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 478 (568)
.+..+...+...|++++|+..|++..+...... ...+..+..+|...|++++|...++...+...
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 355566677778888888888888776421111 25777888888889999999999988886543
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHcCC
Q 041458 479 KPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSA-EVLKELQLRQV 548 (568)
Q Consensus 479 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~ 548 (568)
. +...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++...++.+++. ..+..+...+.
T Consensus 120 ~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 120 N-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred c-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3 67788888888999999999999999888752 336677777777777777776666 55666655443
No 166
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.26 E-value=7.8e-06 Score=65.66 Aligned_cols=103 Identities=12% Similarity=-0.018 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI 527 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 527 (568)
..+..+...+...|++++|...|+......+. +...|..+..+|...|++++|...+++.++.+ +.+...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 45566677778888888888888888765443 67778888888888888888888888888752 33566777778888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCHH
Q 041458 528 AHQDELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~~~~~~ 552 (568)
...|++++|.+.++++++..+.++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 8888888888888888877766443
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=3.5e-05 Score=62.06 Aligned_cols=112 Identities=14% Similarity=-0.069 Sum_probs=89.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPD----SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFN 486 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 486 (568)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+...+...|++++|.+.+++..+.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 4566777888889999999999999998875 455 577888888999999999999999998865433 677888
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041458 487 ALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEG 526 (568)
Q Consensus 487 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 526 (568)
.+..++...|++++|.+.+++..+.. +.+...+..+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 89999999999999999999998852 2345555544443
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.25 E-value=2.5e-05 Score=66.83 Aligned_cols=139 Identities=8% Similarity=-0.113 Sum_probs=103.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----------------hhH
Q 041458 422 LCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDV----------------DNF 485 (568)
Q Consensus 422 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----------------~~~ 485 (568)
....|+++++.+.|+.-.+.. ......+..+...+...|++++|.+.|++..+.... +. ..|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp --------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHH
Confidence 334455555555554222110 112446777888899999999999999999875332 22 788
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhh
Q 041458 486 NALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYDF 563 (568)
Q Consensus 486 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 563 (568)
..+..+|...|++++|...+++.++.. +.+...+..+..++...|++++|.+.+++.++..+.+......+...+..
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 889999999999999999999999862 45788899999999999999999999999999999998888877766644
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.23 E-value=2.5e-05 Score=64.47 Aligned_cols=104 Identities=8% Similarity=-0.069 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041458 447 SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEG 526 (568)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 526 (568)
...+..+...+...|++++|.+.|++..+.... +...|..+..+|.+.|++++|++.+++.++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344555666666666666666666666654332 55566666666666666666666666666542 2245566666666
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCHH
Q 041458 527 IAHQDELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~~~~~~ 552 (568)
+...|++++|.+.+++.++..+.+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH
Confidence 66666666666666666666665433
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.22 E-value=1.5e-05 Score=60.61 Aligned_cols=93 Identities=15% Similarity=0.016 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCc--CHhhHHHHHHHHH
Q 041458 242 NVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSP--TIVTYNILIGSLA 319 (568)
Q Consensus 242 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 319 (568)
..+...+...|++++|...|++..+... .+...+..+...+...|++++|...+++..+.. +. +...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHH
Confidence 3333444444444444444444433211 123333444444444444444444444443332 11 2334444444444
Q ss_pred hc-CChHHHHHHHHHHHH
Q 041458 320 YH-GKTDHALKVLDEMVK 336 (568)
Q Consensus 320 ~~-g~~~~a~~~~~~~~~ 336 (568)
.. |++++|.+.++....
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TCSSCSHHHHHHHHHHGG
T ss_pred HHhCCHHHHHHHHHHHhh
Confidence 44 444444444444443
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.22 E-value=1.1e-05 Score=63.34 Aligned_cols=113 Identities=9% Similarity=0.069 Sum_probs=86.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCC--CCC----HHHH
Q 041458 447 SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQ--MPN----ETTY 520 (568)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~ 520 (568)
...+..+...+...|++++|...|+...+.... +...+..+...+...|++++|...++++.+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 345677888888899999999999888865433 677888888889999999999999988877421 122 6778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhh
Q 041458 521 TILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQY 561 (568)
Q Consensus 521 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 561 (568)
..+..++...|++++|.+.++++.+..+ ++.....+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 8888888899999999999999988877 455555554443
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.22 E-value=1.4e-05 Score=65.81 Aligned_cols=68 Identities=12% Similarity=-0.000 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 483 DNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 483 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
..|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..++...|++++|...+++.++.++.+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 345555555555566666666655555531 22455555555555566666666666666665555544
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.21 E-value=5e-05 Score=60.24 Aligned_cols=103 Identities=10% Similarity=-0.039 Sum_probs=84.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041458 445 PDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILV 524 (568)
Q Consensus 445 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 524 (568)
.+...+..+...+...|++++|...|+...+.... +...|..+..++...|++++|...+++..+.+ +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 35677888888888999999999999888865443 67788888888999999999999999888753 34677888888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 525 EGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
.++...|++++|...++++++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888999999999999988877665
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.16 E-value=1.5e-05 Score=61.78 Aligned_cols=96 Identities=11% Similarity=-0.030 Sum_probs=77.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLC 493 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 493 (568)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..+..+. +...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 35556677888899999999998888753 225777888888888999999999999988876544 6778888888899
Q ss_pred ccCChHHHHHHHHHHHHC
Q 041458 494 KSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 494 ~~g~~~~a~~~~~~m~~~ 511 (568)
..|++++|...+++.++.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988863
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.11 E-value=8.1e-06 Score=62.99 Aligned_cols=85 Identities=14% Similarity=0.009 Sum_probs=42.0
Q ss_pred cCChhHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHH
Q 041458 425 KGKTYQAFQLLYEMTKYGF--TPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 425 ~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 502 (568)
.|++++|+..|++.++.+. +.+...+..+...|...|++++|.+.|++..+..+. +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 3555556666655554321 112334555555555555555555555555544333 3445555555555555555555
Q ss_pred HHHHHHHH
Q 041458 503 EVFQMMIE 510 (568)
Q Consensus 503 ~~~~~m~~ 510 (568)
+.+++.++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.10 E-value=1.9e-05 Score=64.73 Aligned_cols=134 Identities=9% Similarity=-0.037 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-Ch
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFT-PD----SYTYSSLIRGLCMEGLIEEALEIFVVMEEY----DYKP-DV 482 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~ 482 (568)
.++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34667777788888888888888877653111 11 136777888888999999999999887642 1111 14
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 483 DNFNALLLGLCKSRRTDLSLEVFQMMIEK----GQMP-NETTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 483 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
..+..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|.+.+++..+.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 46777888889999999999999888753 1111 2356777888889999999999999988764
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=0.0001 Score=57.67 Aligned_cols=93 Identities=14% Similarity=0.037 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHH
Q 041458 416 KYVITSLCRKGKTYQAFQLLYEMTKYGFTPDS----YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPD---VDNFNAL 488 (568)
Q Consensus 416 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l 488 (568)
..+...+...|++++|...|++..+.. |+. ..+..+..++...|++++|...|+...+.... + ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 345566777888888888888887653 332 36777788888888888888888888765333 3 5667778
Q ss_pred HHHHHccCChHHHHHHHHHHHHC
Q 041458 489 LLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 489 i~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
..++...|++++|.+.++++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888889999999998888875
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=0.00027 Score=68.84 Aligned_cols=197 Identities=8% Similarity=-0.012 Sum_probs=106.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCc----------------ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-
Q 041458 314 LIGSLAYHGKTDHALKVLDEMVKGRFRPSA----------------ASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKP- 376 (568)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~- 376 (568)
-...+.+.|++++|++.|..+.+....... ..+..+...|...|++++|.+.+.++.......
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 345677889999999999998876432211 125667778888888888888887766532111
Q ss_pred ChhhHHH----HH-HHHhCCCHHHHHHHHHHHhh----CCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CC-
Q 041458 377 NEGTYNG----LA-MLCGVGKVQEAFAIIQSLGN----KQNSS-PQEFYKYVITSLCRKGKTYQAFQLLYEMTKY--GF- 443 (568)
Q Consensus 377 ~~~~~~~----~~-~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~- 443 (568)
+...... +. .+...|+.+.|..+++.... .+..+ -..++..+...+...|++++|..++++.... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 1111111 11 12234666666666665432 11111 1234555566666666666666666655432 11
Q ss_pred -CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-CC-C--hhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 444 -TP-DSYTYSSLIRGLCMEGLIEEALEIFVVMEEY--DY-KP-D--VDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 444 -~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~-~p-~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
.+ ...++..++..|...|++++|..++++.... .+ .| . ...+..+...+...|++++|...+.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1234555566666666666666666555421 11 11 1 23344445555556666666666655543
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=0.00015 Score=70.61 Aligned_cols=194 Identities=10% Similarity=0.013 Sum_probs=100.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH----------------hhHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCcH
Q 041458 106 YDLCKANKMKKAIKVMEMMVSSGIIPDA----------------SSYTYLVNCLCKKGNVGYAMQLVEKMEDYG-YPTNT 168 (568)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~ 168 (568)
..+.+.|++++|++.|..+.+....... .++..+...|...|++++|.+.+..+...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3455666777777777766654321110 124556666677777777776666554310 00111
Q ss_pred ----HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C--C
Q 041458 169 ----VTYNSLVRGLCMLGNLNQSLQFLDRLIQK----GLVP-NAFTYSFLLEAAYKERGVHAAMKLLDDIIAKG--G--K 235 (568)
Q Consensus 169 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~--~ 235 (568)
.+.+.+-..+...|+.+.|.+++...... +..+ -..++..+...+...|++++|..+++++...- . +
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 12222333333456666776666655431 2121 13355556666666777777777666654421 1 1
Q ss_pred -CCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCCC--hhHHHHHHHHHHcCCCHHHHHHHHHHh
Q 041458 236 -PNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK----GFEPN--VVSYNILLRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 236 -~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 299 (568)
.....+..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11335566666666777777777666655432 11111 123444445555666666666655554
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.02 E-value=4.6e-05 Score=74.71 Aligned_cols=87 Identities=10% Similarity=-0.043 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEG 526 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~ 526 (568)
..|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|...|+++++. .| +...+..+..+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 45556666666666666666666666654333 4556666666666666666666666666653 23 34455555555
Q ss_pred HHhcCChhHHH
Q 041458 527 IAHQDELELSA 537 (568)
Q Consensus 527 ~~~~g~~~~a~ 537 (568)
+.+.|+.+++.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.01 E-value=0.00039 Score=69.74 Aligned_cols=133 Identities=11% Similarity=-0.005 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-ChHHHHHH
Q 041458 428 TYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEG--LIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSR-RTDLSLEV 504 (568)
Q Consensus 428 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~ 504 (568)
++++++.++++.+...+ +..+|..-..++.+.| +++++++.++++.+.... |...|+.-..++.+.| ..+++.+.
T Consensus 89 ~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHH
Confidence 55555555555554322 4445555555555555 446666666665554444 5555555555555555 55556666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CChhHHHHHHHHHHHcCCCCHHHHHHHHHhhhh
Q 041458 505 FQMMIEKGQMPNETTYTILVEGIAHQ--------------DELELSAEVLKELQLRQVVSESAVERLVMQYDF 563 (568)
Q Consensus 505 ~~~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 563 (568)
++++++.. +-|...|.....++.+. +.++++.+++++++..+|.+..+...+...+..
T Consensus 167 ~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 55555532 22455555544444432 335566666666666666655555544444433
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.98 E-value=1.4e-05 Score=61.66 Aligned_cols=93 Identities=11% Similarity=0.008 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041458 460 EGLIEEALEIFVVMEEYDY--KPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSA 537 (568)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 537 (568)
.|++++|...|++..+.+. +.+...+..+..+|...|++++|.+.+++.++.. +.+..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4667777777777776431 1245566777777777777777777777777652 335666777777777777777777
Q ss_pred HHHHHHHHcCCCCHHH
Q 041458 538 EVLKELQLRQVVSESA 553 (568)
Q Consensus 538 ~~~~~~~~~~~~~~~~ 553 (568)
..+++.++..+.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 7777777777665543
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.96 E-value=1.5e-05 Score=74.65 Aligned_cols=132 Identities=14% Similarity=0.004 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh------------------hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDS------------------YTYSSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~------------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
+..+...+.+.|++++|+..|++.++. .|+. ..|..+..+|.+.|++++|...+++..+.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444555556666666666655543 2322 26788888999999999999999998876
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 477 DYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP-NETTYTILVEG-IAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 477 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
... +...|..+..+|...|++++|.+.|+++.+. .| +...+..+... ....+..+.+.+.+++++...+.++
T Consensus 260 ~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 260 EEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp CTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 433 7788999999999999999999999998764 45 34455544444 2345667888889999988877644
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.96 E-value=7.2e-05 Score=70.85 Aligned_cols=125 Identities=10% Similarity=0.002 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--------------CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 412 QEFYKYVITSLCRKGKTYQAFQLLYEMTKYG--------------FTP-DSYTYSSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
...+..+...+.+.|++++|++.|++.++.- ..| +..+|..+..+|.+.|++++|.+.+++..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 4557777888888999999999998877510 111 2456667777777777777777777777765
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 041458 477 DYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAE 538 (568)
Q Consensus 477 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 538 (568)
... +...|..+..+|...|++++|.+.++++.+.. +.+...+..+..++...++.+++.+
T Consensus 303 ~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 56677777777777777777777777777641 2355666666666666666655543
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.95 E-value=8e-05 Score=61.22 Aligned_cols=101 Identities=10% Similarity=0.012 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC--------CC--------CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 414 FYKYVITSLCRKGKTYQAFQLLYEMTKY--------GF--------TP-DSYTYSSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~--------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
.+......+.+.|++++|+..|.+.++. .. .| +...|..+..+|.+.|++++|...++...+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3555666677777777777777776653 00 11 2357788888999999999999999999876
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 041458 477 DYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE 517 (568)
Q Consensus 477 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 517 (568)
.+. +...|..+..+|...|++++|...|++.++. .|+.
T Consensus 93 ~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 93 EET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred CCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 544 6788899999999999999999999999885 5543
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.95 E-value=3.4e-05 Score=76.01 Aligned_cols=119 Identities=7% Similarity=0.004 Sum_probs=92.3
Q ss_pred chhhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 041458 71 DTRHRDHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVG 150 (568)
Q Consensus 71 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 150 (568)
..+.+.|++++|+..|++.++.. +.+...|..+...+.+.|++++|++.++++.+... .+..+|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 34567899999999999988863 34688899999999999999999999999998753 36778888889999999999
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHH--HHhcCChHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRG--LCMLGNLNQSLQFLD 192 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 192 (568)
+|++.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999988753 2344556555555 778888999998887
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.94 E-value=5e-05 Score=62.10 Aligned_cols=97 Identities=14% Similarity=0.071 Sum_probs=56.5
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCC-cH
Q 041458 99 VQATNLLYDLCKANKMKKAIKVMEMMVSSGII-PD----ASSYTYLVNCLCKKGNVGYAMQLVEKMEDY----GYPT-NT 168 (568)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~ 168 (568)
.++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+. +.++ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34566677777788888888888776643100 11 125556666667777777777777665432 1000 13
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041458 169 VTYNSLVRGLCMLGNLNQSLQFLDRLI 195 (568)
Q Consensus 169 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 195 (568)
.++..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345555666666666666666666554
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.94 E-value=2.2e-05 Score=77.37 Aligned_cols=117 Identities=10% Similarity=0.023 Sum_probs=57.1
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHH
Q 041458 422 LCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLS 501 (568)
Q Consensus 422 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 501 (568)
+.+.|++++|++.+++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.... +...|..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 344555555555555555432 113445555555555666666666666555554332 445555555556666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 041458 502 LEVFQMMIEKGQMPNETTYTILVEG--IAHQDELELSAEVLK 541 (568)
Q Consensus 502 ~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~ 541 (568)
.+.++++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666555531 1122233333333 455555555555555
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.94 E-value=8.4e-05 Score=70.40 Aligned_cols=117 Identities=9% Similarity=-0.112 Sum_probs=68.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhC---------------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 041458 384 LAMLCGVGKVQEAFAIIQSLGNK---------------QNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSY 448 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 448 (568)
...+.+.|++++|...|++..+. ....+...|..+..+|.+.|++++|++.+++.++... .+..
T Consensus 230 g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~ 308 (370)
T 1ihg_A 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTK 308 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHH
Confidence 45566667777777777665541 0111234566666666677777777777776665421 2455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 502 (568)
.+..+..+|...|++++|.+.|++..+.... +...+..+..++...++.+++.
T Consensus 309 a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 309 ALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666677777777777777666654322 4555555555555555554443
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.93 E-value=6.1e-05 Score=60.35 Aligned_cols=66 Identities=9% Similarity=-0.072 Sum_probs=45.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHC-----CCCCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEK-----GQMPN-ETTY----TILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|...|++.++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 6677777777777777777777777762 01453 4566 67777777788888888888887776554
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.93 E-value=0.00038 Score=55.24 Aligned_cols=112 Identities=6% Similarity=-0.113 Sum_probs=78.3
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChHHH
Q 041458 426 GKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK----SRRTDLS 501 (568)
Q Consensus 426 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a 501 (568)
++.++|++.|++..+.| .|+.. |...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35677777777777765 22322 6666666677777888887777654 56677777777776 6778888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCC
Q 041458 502 LEVFQMMIEKGQMPNETTYTILVEGIAH----QDELELSAEVLKELQLRQV 548 (568)
Q Consensus 502 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~ 548 (568)
.++|++..+.| +...+..|...|.. .++.++|.+++++..+.+.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88888877754 55666667777776 6778888888888777653
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.92 E-value=0.00027 Score=70.90 Aligned_cols=138 Identities=8% Similarity=-0.043 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHH
Q 041458 393 VQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKG--KTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEG-LIEEALEI 469 (568)
Q Consensus 393 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~ 469 (568)
+++++..++.+.+.+++ +..+|..-...+.+.+ +++++++.++++.+...+ |..+|+.-..++.+.| .++++.++
T Consensus 89 ~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHH
Confidence 66777777777766554 6677888888888888 669999999999987544 6778888888888888 89999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcc--------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 041458 470 FVVMEEYDYKPDVDNFNALLLGLCKS--------------RRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELE 534 (568)
Q Consensus 470 ~~~m~~~~~~p~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 534 (568)
++++.+..+. |...|+.....+.+. +.++++.+.+++++... +-|...|..+-..+.+.+..+
T Consensus 167 ~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 9999887666 788888877776653 45789999999998852 447788888877777776644
No 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.89 E-value=9.9e-05 Score=72.31 Aligned_cols=81 Identities=15% Similarity=0.053 Sum_probs=67.9
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhh
Q 041458 482 VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQY 561 (568)
Q Consensus 482 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 561 (568)
...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...++++++..+.+..+...+...+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5788899999999999999999999999863 447889999999999999999999999999999999888777777665
Q ss_pred hh
Q 041458 562 DF 563 (568)
Q Consensus 562 ~~ 563 (568)
..
T Consensus 396 ~~ 397 (457)
T 1kt0_A 396 KK 397 (457)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.85 E-value=0.00019 Score=57.49 Aligned_cols=95 Identities=16% Similarity=0.061 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC------Ch-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTP------DS-----YTYSSLIRGLCMEGLIEEALEIFVVMEEY------- 476 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p------~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------- 476 (568)
+......+.+.|++++|+..|++.++..... +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4455666777888888888888877642220 12 27888889999999999999999988875
Q ss_pred CCCCChhhH----HHHHHHHHccCChHHHHHHHHHHHH
Q 041458 477 DYKPDVDNF----NALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 477 ~~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
... +...| .....++...|++++|+..|++.++
T Consensus 94 ~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 433 56678 8889999999999999999999886
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.84 E-value=0.00057 Score=54.17 Aligned_cols=112 Identities=12% Similarity=0.036 Sum_probs=71.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChhh
Q 041458 76 DHKLNDAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK----KGNVGY 151 (568)
Q Consensus 76 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 151 (568)
.+++++|+..|++..+.|. ++.. +...|...+.+++|+++|++..+.| +...+..|...|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 3456677777777766652 2222 5555556666677777777777654 55666666666666 667777
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 041458 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCM----LGNLNQSLQFLDRLIQKG 198 (568)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 198 (568)
|.+.|++..+.| ++..+..|...|.. .++.++|.+.|++..+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777776654 55666666666666 666777777776666654
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.81 E-value=0.00022 Score=51.54 Aligned_cols=82 Identities=15% Similarity=0.080 Sum_probs=52.2
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhh
Q 041458 482 VDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQY 561 (568)
Q Consensus 482 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 561 (568)
...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+++..+..+.+......+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3455556666666667777777666666542 335566666666677777777777777777777666666666666655
Q ss_pred hhc
Q 041458 562 DFE 564 (568)
Q Consensus 562 ~~~ 564 (568)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.73 E-value=7.6e-05 Score=69.87 Aligned_cols=149 Identities=13% Similarity=-0.030 Sum_probs=61.8
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHH
Q 041458 203 AFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRS 282 (568)
Q Consensus 203 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 282 (568)
...+..+...+.+.|++++|...|++.+.. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 344555555666667777777777766654 122211 112222222222211 1245556666
Q ss_pred HHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHH-HHhcCCHHH
Q 041458 283 LCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIAR-LCSEGKVDL 361 (568)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~ 361 (568)
|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665543 334556666666666666666666666666543211 22233333222 122334444
Q ss_pred HHHHHHHHhhC
Q 041458 362 VVKCLDQMFHR 372 (568)
Q Consensus 362 a~~~~~~~~~~ 372 (568)
+...|..+...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 55555555443
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.67 E-value=3.4e-05 Score=58.52 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
..+..+...+...|++++|.+.|++..+.... +...|..+..++.+.|++++|.+.+++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34555555556666666666666655543322 455555666666666666666666666655
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.64 E-value=0.00039 Score=53.02 Aligned_cols=79 Identities=13% Similarity=0.015 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 041458 430 QAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMI 509 (568)
Q Consensus 430 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 509 (568)
+|+..|++..+.. +.+...+..+...+...|++++|...|++..+.... +...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667777776643 224566777777777778888887777777765433 56677777777777777777777777776
Q ss_pred H
Q 041458 510 E 510 (568)
Q Consensus 510 ~ 510 (568)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00039 Score=52.43 Aligned_cols=84 Identities=11% Similarity=0.051 Sum_probs=71.4
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC------HHHH
Q 041458 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVS------ESAV 554 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~ 554 (568)
+...|..+...+...|++++|.+.+++.++.. +.+...|..+..++...|++++|.+.+++.++..+.+ ....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 56778889999999999999999999999862 4478899999999999999999999999999999987 6666
Q ss_pred HHHHHhhhhcC
Q 041458 555 ERLVMQYDFEG 565 (568)
Q Consensus 555 ~~l~~~~~~~g 565 (568)
..+...+...|
T Consensus 82 ~~~~~~~~~~~ 92 (111)
T 2l6j_A 82 YRLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655443
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.60 E-value=0.00016 Score=57.73 Aligned_cols=86 Identities=17% Similarity=-0.040 Sum_probs=46.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 423 CRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLI----------EEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 423 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
.+.+.+++|++.+++..+... .+...|..+..++...+++ ++|+..|++..+..+. +...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 345566666666666665432 2455666666666655543 3555555555544333 445555555555
Q ss_pred HccC-----------ChHHHHHHHHHHHH
Q 041458 493 CKSR-----------RTDLSLEVFQMMIE 510 (568)
Q Consensus 493 ~~~g-----------~~~~a~~~~~~m~~ 510 (568)
...| ++++|++.|+++++
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 5443 44455555554444
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.60 E-value=0.00012 Score=58.50 Aligned_cols=91 Identities=10% Similarity=-0.013 Sum_probs=46.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041458 460 EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRT----------DLSLEVFQMMIEKGQMPNETTYTILVEGIAH 529 (568)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 529 (568)
.+.+++|.+.++...+..+. +...|..+..++...+++ ++|+..|++.++.+ +.+..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 34455555555555544333 555555555555554443 35555555555531 2244555555555554
Q ss_pred cC-----------ChhHHHHHHHHHHHcCCCCHH
Q 041458 530 QD-----------ELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 530 ~g-----------~~~~a~~~~~~~~~~~~~~~~ 552 (568)
.| ++++|.+.|++.++.++.+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 42 555555555555555555443
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.56 E-value=0.00036 Score=68.28 Aligned_cols=126 Identities=11% Similarity=-0.003 Sum_probs=81.7
Q ss_pred HHhcCChhHHHHHHHHHHHC---CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CC-hhhHHH
Q 041458 422 LCRKGKTYQAFQLLYEMTKY---GFTPD----SYTYSSLIRGLCMEGLIEEALEIFVVMEE-----YDYK-PD-VDNFNA 487 (568)
Q Consensus 422 ~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~-p~-~~~~~~ 487 (568)
+...|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|..++++..+ .|.. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777765531 12222 34677788888888888888888877642 2321 22 345777
Q ss_pred HHHHHHccCChHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 488 LLLGLCKSRRTDLSLEVFQMMIE-----KGQ-MPN-ETTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 488 li~~~~~~g~~~~a~~~~~~m~~-----~g~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
|...|...|++++|..++++..+ .|- .|+ ..+...+..++...|.+++|+..+.++.+.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887764 231 222 2344455566667788888888888876643
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.50 E-value=0.00041 Score=67.85 Aligned_cols=86 Identities=15% Similarity=0.076 Sum_probs=42.5
Q ss_pred HHcCCHHHHHHHHHHHHHc-----CC-CC-CHhhHHHHHHHHHhcCChHHHHHHHHHhhhC-----CC-CCC-hhHHHHH
Q 041458 214 YKERGVHAAMKLLDDIIAK-----GG-KP-NLVSYNVLLTGLCKEGRTEEAIRFFRDLPSK-----GF-EPN-VVSYNIL 279 (568)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~~l 279 (568)
...|++++|+.++++.++. |. .| ...+++.|...|...|++++|..++++..+. |. .|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456666666666555442 10 11 1234555555666666666666655554321 11 111 2345555
Q ss_pred HHHHHcCCCHHHHHHHHHHh
Q 041458 280 LRSLCMEGRWEEANELLAEM 299 (568)
Q Consensus 280 ~~~~~~~g~~~~a~~~~~~~ 299 (568)
...|...|++++|+.++++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555555544
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.48 E-value=0.0011 Score=47.74 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041458 448 YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGI 527 (568)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 527 (568)
..+..+...+...|++++|.+.+++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34555566666666666666666666544322 45566666666666777777777776666541 22445555554444
Q ss_pred Hh
Q 041458 528 AH 529 (568)
Q Consensus 528 ~~ 529 (568)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.46 E-value=0.00085 Score=51.10 Aligned_cols=65 Identities=8% Similarity=-0.024 Sum_probs=29.6
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041458 481 DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLR 546 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (568)
+...+..+...|...|++++|.+.+++.++.. +.+...|..+..++...|++++|...+++.++.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444431 223344444444444444444444444444443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.39 E-value=0.00069 Score=50.11 Aligned_cols=64 Identities=23% Similarity=0.213 Sum_probs=46.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 446 DSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 446 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
+...+..+...|...|++++|.+.|++..+.... +...|..+..+|...|++++|.+.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556777777777778888888888777765433 566777777777777888887777777765
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.28 E-value=0.0011 Score=48.99 Aligned_cols=63 Identities=11% Similarity=-0.014 Sum_probs=36.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVME 474 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 474 (568)
+...+..+...|...|++++|+..|++..+.... +...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555666666666666666666666554211 34455566666666666666666666554
No 209
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.90 E-value=0.012 Score=46.41 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC---ChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHH
Q 041458 464 EEALEIFVVMEEYDYKPDVDNFNALLLGLCKSR---RTDLSLEVFQMMIEKGQMP--NETTYTILVEGIAHQDELELSAE 538 (568)
Q Consensus 464 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~ 538 (568)
..+.+.|....+.+. ++..+...+..++++.+ +.++++.++++..+.+ .| ....+-.+.-+|.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344455555444443 45666666666666666 4456666666666642 23 23444455556667777777777
Q ss_pred HHHHHHHcCCCCHHH
Q 041458 539 VLKELQLRQVVSESA 553 (568)
Q Consensus 539 ~~~~~~~~~~~~~~~ 553 (568)
+++.+++..|.+..+
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 777777777665443
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.87 E-value=0.0079 Score=43.95 Aligned_cols=58 Identities=22% Similarity=0.170 Sum_probs=37.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCChHHHHHHHHHHHHC
Q 041458 453 LIRGLCMEGLIEEALEIFVVMEEYDYKPDVD-NFNALLLGLCKSRRTDLSLEVFQMMIEK 511 (568)
Q Consensus 453 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 511 (568)
....+...|++++|.+.+++..+.... +.. .|..+..+|...|++++|.+.|++.++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345566667777777777766654322 445 6666666777777777777777776664
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.82 E-value=0.018 Score=53.03 Aligned_cols=138 Identities=10% Similarity=-0.015 Sum_probs=86.7
Q ss_pred CChhhHHHHHHHHHh--cC---ChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHh----cC-C---HHHHHHHHHHHHh
Q 041458 410 SPQEFYKYVITSLCR--KG---KTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCM----EG-L---IEEALEIFVVMEE 475 (568)
Q Consensus 410 ~~~~~~~~li~~~~~--~g---~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~----~g-~---~~~a~~~~~~m~~ 475 (568)
.+...|...+.+... .+ ...+|..+|++.++. .|+ ...|..+..+|.. .+ . .......++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 355666666655432 22 346788888888775 454 3344443333321 11 1 1111112222111
Q ss_pred -CCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCH
Q 041458 476 -YDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSE 551 (568)
Q Consensus 476 -~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 551 (568)
...+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++.+..+|.++
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1123467777777777777799999999999998864 7877777778888888999999999999988888754
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.80 E-value=0.091 Score=55.57 Aligned_cols=152 Identities=11% Similarity=0.068 Sum_probs=82.7
Q ss_pred HHhcCChHHHHH-HHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 178 LCMLGNLNQSLQ-FLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 178 ~~~~g~~~~a~~-~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
....+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+.-. .-.......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence 344667777665 44211 112223556666666777777665543111 11223455677777
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 257 AIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 257 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
|.++.+.+. +...|..+...+.+.++++.|++.|.++.. |..+...|...|+.+...++-+....
T Consensus 671 A~~~~~~~~------~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDES------AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhC------cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 777765542 556777777777777777777777776642 33444455556666655554444443
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 041458 337 GRFRPSAASYNPIIARLCSEGKVDLVVKCLDQ 368 (568)
Q Consensus 337 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 368 (568)
.| -++....+|.+.|++++|++++.+
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 32 123334445555666665555433
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.73 E-value=0.033 Score=51.29 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=50.0
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHH
Q 041458 200 VPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYN 277 (568)
Q Consensus 200 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 277 (568)
..+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4466666666666666677777777777777764 56666666666777777888887777777665 44544443
No 214
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.72 E-value=0.016 Score=42.87 Aligned_cols=64 Identities=11% Similarity=-0.061 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 447 SYTYSSLIRGLCMEGLIEEALEIFVVMEEYD------YKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
..-+..+...+...|+++.|..+|+...+.- -.+....+..+..++.+.|++++|..+++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344455566666666666666666554310 112344455555555555555555555555554
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.69 E-value=0.0026 Score=46.70 Aligned_cols=57 Identities=21% Similarity=0.161 Sum_probs=34.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 419 ITSLCRKGKTYQAFQLLYEMTKYGFTPDSY-TYSSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
...+.+.|++++|+..+++..+.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445556666666766666666542 11344 5666666666666677776666666654
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.68 E-value=0.17 Score=53.44 Aligned_cols=127 Identities=13% Similarity=0.063 Sum_probs=79.9
Q ss_pred HHHHHcCCHHHHHH-HHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCH
Q 041458 211 EAAYKERGVHAAMK-LLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRW 289 (568)
Q Consensus 211 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 289 (568)
......+++++|.+ ++..+ + +......++..+.+.|..++|.++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33445778888766 44211 1 02223667777788888888887663211 112334567888
Q ss_pred HHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 041458 290 EEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNPIIARLCSEGKVDLVVKCLDQM 369 (568)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 369 (568)
++|.++.+.+. +...|..+...+.+.|+++.|.+.|..+.. |..+...+...|+.+...++-+..
T Consensus 669 ~~A~~~~~~~~------~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDES------AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC------cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 88888865542 567888888888888888888888887642 344555555566666555444433
Q ss_pred h
Q 041458 370 F 370 (568)
Q Consensus 370 ~ 370 (568)
.
T Consensus 734 ~ 734 (814)
T 3mkq_A 734 E 734 (814)
T ss_dssp H
T ss_pred H
Confidence 3
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.66 E-value=0.016 Score=41.76 Aligned_cols=68 Identities=10% Similarity=-0.001 Sum_probs=36.2
Q ss_pred ChhhHHHHHHHHHccCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 481 DVDNFNALLLGLCKSRR---TDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 481 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
|...+..+..++...++ .++|..++++.++.+ +-+...+..+...+.+.|++++|..+|+++.+.++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44455555555543333 455666666655531 224455555555555666666666666666655555
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.53 E-value=0.013 Score=56.28 Aligned_cols=60 Identities=12% Similarity=-0.056 Sum_probs=28.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEK-----G-QMPN-ETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
+++.+..+|...|++++|..++++.++. | ..|+ ..+++.|...|...|++++|..++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3444455555555555555555444421 1 1121 234445555555555555555555554
No 219
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.44 E-value=0.049 Score=42.29 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=50.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHhhh
Q 041458 495 SRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQYD 562 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (568)
.+++++|.++|+.+++.+-.- ...|.....--.+.|+.+.|++++.+.+..++.|...+...+.-+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN 139 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence 367788888888887643233 7777777777777888888888888888888888888877776554
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.39 E-value=0.018 Score=55.31 Aligned_cols=86 Identities=8% Similarity=-0.098 Sum_probs=63.4
Q ss_pred cCChhHHHHHHHHHHH---CCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-hhhHHHHHH
Q 041458 425 KGKTYQAFQLLYEMTK---YGFTPD----SYTYSSLIRGLCMEGLIEEALEIFVVMEE-----YDY-KPD-VDNFNALLL 490 (568)
Q Consensus 425 ~g~~~~A~~~~~~~~~---~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~~~~li~ 490 (568)
.|++++|+.++++..+ .-+.|+ ..+++.|..+|...|++++|..++++..+ .|. .|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4677888888877654 112233 35678889999999999999999988753 332 222 346888999
Q ss_pred HHHccCChHHHHHHHHHHHH
Q 041458 491 GLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~ 510 (568)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988875
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.31 E-value=0.026 Score=54.25 Aligned_cols=92 Identities=13% Similarity=-0.003 Sum_probs=44.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC---CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-hhh
Q 041458 419 ITSLCRKGKTYQAFQLLYEMTKYG---FTPD----SYTYSSLIRGLCMEGLIEEALEIFVVMEE-----YDY-KPD-VDN 484 (568)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~ 484 (568)
+..+.+.|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|..++++..+ .|. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344445566666666666555321 1122 12445555555555666666655555432 111 111 223
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 485 FNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 485 ~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
++.|...|...|++++|..+++++.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555543
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.09 E-value=0.018 Score=55.28 Aligned_cols=91 Identities=13% Similarity=-0.011 Sum_probs=50.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCC---CCC----ChhHHHHHHHHHHcCCCHHHHHHHHHHhccC-----C--CCcCHhh
Q 041458 245 LTGLCKEGRTEEAIRFFRDLPSKG---FEP----NVVSYNILLRSLCMEGRWEEANELLAEMDGG-----D--RSPTIVT 310 (568)
Q Consensus 245 l~~~~~~g~~~~A~~~~~~~~~~~---~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~ 310 (568)
+.-+.+.|++++|+.++++..+.. +.| ...+++.+...|...|++++|+.++++.... | .+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334455667777777776665321 111 1345666666677777777776666655321 1 1112345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 041458 311 YNILIGSLAYHGKTDHALKVLDEMV 335 (568)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (568)
++.|...|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5666666666666666666666554
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.08 E-value=0.043 Score=43.27 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHccCChHHHHH
Q 041458 429 YQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEG---LIEEALEIFVVMEEYDYKP--DVDNFNALLLGLCKSRRTDLSLE 503 (568)
Q Consensus 429 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~ 503 (568)
..+.+-|.+..+.|. ++..+...+..++++.+ +++++..+++...+.+ .| +...+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344555555555443 56666667777777776 5567777777776543 12 34555566667777788888888
Q ss_pred HHHHHHHCCCCCC
Q 041458 504 VFQMMIEKGQMPN 516 (568)
Q Consensus 504 ~~~~m~~~g~~p~ 516 (568)
.++.+++ +.|+
T Consensus 93 y~~~lL~--ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHH--HCTT
T ss_pred HHHHHHh--cCCC
Confidence 8877777 3553
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.06 E-value=0.028 Score=40.45 Aligned_cols=64 Identities=6% Similarity=0.038 Sum_probs=30.9
Q ss_pred ChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 446 DSYTYSSLIRGLCMEGL---IEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 446 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
|...+..+..++...++ .++|..++++..+.... +......+...+.+.|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444444433322 35555555555544333 444444555555555555555555555554
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.39 Score=38.89 Aligned_cols=45 Identities=11% Similarity=0.212 Sum_probs=21.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 041458 214 YKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDL 264 (568)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 264 (568)
.+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3444444444444433 13444555555555555555555555443
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.70 E-value=0.086 Score=39.90 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhH
Q 041458 461 GLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDL---SLEVFQMMIEKGQMP--NETTYTILVEGIAHQDELEL 535 (568)
Q Consensus 461 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~ 535 (568)
..+..+.+-|......|. |+..+--.+..++.+..+..+ ++.++++..+.+ .| .....-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 334455555555544343 466666667777777776555 777777776643 23 23344455567788888888
Q ss_pred HHHHHHHHHHcCCCCHHH
Q 041458 536 SAEVLKELQLRQVVSESA 553 (568)
Q Consensus 536 a~~~~~~~~~~~~~~~~~ 553 (568)
|+++++.+++..|.+..+
T Consensus 93 A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhCCCCHHH
Confidence 888888888888876544
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.67 E-value=0.17 Score=39.33 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=54.8
Q ss_pred CCCHHhHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCHh-hHHHHHHH------HHhcCChhhHHHHHHHHHh
Q 041458 95 KPDVVQATNLLYDLCKANKM------KKAIKVMEMMVSSGIIPDAS-SYTYLVNC------LCKKGNVGYAMQLVEKMED 161 (568)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~li~~------~~~~g~~~~a~~~~~~~~~ 161 (568)
+.|..+|-..+...-+.|+. ++.+++|+++... ++|+.. .|...|.. +...+++++|+++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34667777777777777777 7777888877764 334321 12222111 1123555666666665543
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 041458 162 YGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGL 199 (568)
Q Consensus 162 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 199 (568)
.. +.=...|......-.+.|++..|.+++.+.+..+.
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 31 11144555555555555555555555555555443
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.55 E-value=0.55 Score=35.67 Aligned_cols=64 Identities=13% Similarity=0.076 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQ 513 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 513 (568)
.+..-++.....|.-++-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.++-++|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 333444444444555554444444322 1233444444555555555555555555555554443
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.41 E-value=0.14 Score=37.70 Aligned_cols=66 Identities=17% Similarity=0.146 Sum_probs=44.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC------CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSG------IIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDY 162 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 162 (568)
+...+..+...+.+.|++..|..+|+.+.+.- ..+...++..+..++.+.|+++.|+..+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556677778888888888888888776531 1224456667777777777777777777777654
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.12 E-value=0.18 Score=44.49 Aligned_cols=107 Identities=17% Similarity=0.154 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-CCh
Q 041458 428 TYQAFQLLYEMTKYGFTPD---SYTYSSLIRGLCME-----GLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKS-RRT 498 (568)
Q Consensus 428 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~ 498 (568)
...|...+++.++. .|+ ...|..+...|... |+.++|.+.|++..+....-+..++..+.+.+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34666777777764 555 45777888888874 88999999998888765433477777788888874 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 499 DLSLEVFQMMIEKGQM--PNETTYTILVEGIAHQDELELSAEVLKELQ 544 (568)
Q Consensus 499 ~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (568)
+++.+.+++.+..+.. |+....+.+ .-++|..+++++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhH
Confidence 9999999988886544 554333322 2245555555443
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.98 E-value=1.2 Score=36.13 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=52.9
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 041458 143 LCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAA 222 (568)
Q Consensus 143 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 222 (568)
....|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|.-.|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666665544 1455666666666666666666666665431 22333344445555554
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 041458 223 MKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDL 264 (568)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 264 (568)
.++-+....+| -++.....+...|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 44444333332 1344444455566666666666543
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.70 E-value=1 Score=34.22 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=72.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 041458 180 MLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIR 259 (568)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 259 (568)
-.|..++..++..+.... .+..-||.+|.-....-+-+...+.++.+-.. -|. ..+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 345556666666555542 14445555555444444444444444433221 111 12344444444
Q ss_pred HHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 041458 260 FFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF 339 (568)
Q Consensus 260 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (568)
.+-.+-. +......-++.+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 83 C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 4433321 3344455566666667777777776665432 255666666667777777777777777776666654
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.69 E-value=1.3e-05 Score=74.89 Aligned_cols=234 Identities=15% Similarity=0.129 Sum_probs=160.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041458 97 DVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVR 176 (568)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 176 (568)
....|..|..+..+.+++.+|++-|- +. -|+..|..+|....+.|.+++-++.+...++. ..++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 34568889999999998888876652 22 27778899999999999999999888766654 235566678899
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHH
Q 041458 177 GLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEE 256 (568)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 256 (568)
+|++.++..+-.+++ -.||..-...+.+-|...|.++.|.-+|.. +.-|.-|...+.+.|++..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~---------isN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNN---------VSNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGG---------SCCCTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHh---------CccHHHHHHHHHHHHHHHH
Confidence 999998876654433 246776777778888888888777666643 2235556666777888887
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 257 AIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVK 336 (568)
Q Consensus 257 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (568)
|.+.-++.. ++.||-.+-.+|...+++.-|...--.+.-. ..-...++..|-..|.+++-+.+++.-+.
T Consensus 189 AVdaArKAn------s~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTTCC------SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHhcC------ChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 776554433 6778888888898888887766554444321 11223456668888888888888887763
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 041458 337 GRFRPSAASYNPIIARLCSEGKVDLVVKCLD 367 (568)
Q Consensus 337 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 367 (568)
.. +....+|+.|.-.|++- ++++..+.++
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 21 33556677777777665 3444444443
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.51 E-value=0.43 Score=42.15 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-CCh
Q 041458 184 LNQSLQFLDRLIQKGLVPN---AFTYSFLLEAAYK-----ERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKE-GRT 254 (568)
Q Consensus 184 ~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~ 254 (568)
...|...+++.++. .|+ -..|..+...|.+ -|+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 46777777777775 454 4578888888888 489999999999998874433467777788888874 899
Q ss_pred HHHHHHHHHhhhCCCC--CChhHHHHH
Q 041458 255 EEAIRFFRDLPSKGFE--PNVVSYNIL 279 (568)
Q Consensus 255 ~~A~~~~~~~~~~~~~--p~~~~~~~l 279 (568)
+++.+.+++....... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999887666 665555443
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.76 E-value=0.31 Score=36.87 Aligned_cols=87 Identities=9% Similarity=0.044 Sum_probs=56.0
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHhCC-CCCChhhHHHHHHHHHccCChHHHH
Q 041458 427 KTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEE---ALEIFVVMEEYD-YKPDVDNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~ 502 (568)
....+.+-+.+....|. |+..+--.+.+++.+...... ++.+++...+.+ ..-.....-.|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444555555444443 566666677778877776555 777887777643 1113344555666788888888888
Q ss_pred HHHHHHHHCCCCCC
Q 041458 503 EVFQMMIEKGQMPN 516 (568)
Q Consensus 503 ~~~~~m~~~g~~p~ 516 (568)
+.++.+++. .|+
T Consensus 95 ~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 95 KYVRGLLQT--EPQ 106 (126)
T ss_dssp HHHHHHHHH--CTT
T ss_pred HHHHHHHHh--CCC
Confidence 888888873 563
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.70 E-value=1.7e-05 Score=74.24 Aligned_cols=119 Identities=12% Similarity=0.084 Sum_probs=84.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 041458 411 PQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLL 490 (568)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 490 (568)
++.+|..+-.+|...+.+.-|...--.++- .|| -...++.-|-..|.+++-+.+++.-... -....-+|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 667899999999999998887766555552 222 2345677788999999999999887732 2346778999988
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 041458 491 GLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKE 542 (568)
Q Consensus 491 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 542 (568)
.|++- ++++-.+.++....+---| -++++|.+...|.++.-++..
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNip------KviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIP------KVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCT------TTHHHHTTTTCHHHHHHHHHH
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHH------HHHHHHHHHhhHHHHHHHHhc
Confidence 88887 5666666555443321112 478899999999998876654
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.51 E-value=0.83 Score=34.72 Aligned_cols=77 Identities=12% Similarity=0.135 Sum_probs=45.4
Q ss_pred CCCCChhhHHHHHHHHHccCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHH
Q 041458 477 DYKPDVDNFNALLLGLCKSRRT---DLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESA 553 (568)
Q Consensus 477 ~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 553 (568)
+..|+..+--.+..++.+..+. .+++.++++..+.+..-....+-.|.-++.+.|++++|+++.+.+++..|.+..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3345555555556666665543 3566666666654311123444455566777777777777777777777775543
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.38 E-value=2.1 Score=32.99 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=41.4
Q ss_pred CCChhhHHHHHHHHHccCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHH
Q 041458 479 KPDVDNFNALLLGLCKSRRT---DLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSES 552 (568)
Q Consensus 479 ~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 552 (568)
.|+..+--.+..++.+..+. .+++.++++..+.+..-.....-.|.-++.+.|++++|+++.+.+++..|.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 34555555555566655543 356666666665321112233334445666777777777777777777776543
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.11 E-value=2.3 Score=30.31 Aligned_cols=56 Identities=4% Similarity=0.054 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHH
Q 041458 500 LSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVE 555 (568)
Q Consensus 500 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 555 (568)
+..+-++.+...++.|++.+..+.+++|++.+++..|.++++-+..+-......+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~ 83 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYP 83 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHH
Confidence 44555555555566666666666666666666666666666666555444333333
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.92 E-value=1.4 Score=45.17 Aligned_cols=127 Identities=11% Similarity=0.109 Sum_probs=76.3
Q ss_pred HHHHHHHhcCC-hhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHC------CCCC-CHh----
Q 041458 138 YLVNCLCKKGN-VGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGN-LNQSLQFLDRLIQK------GLVP-NAF---- 204 (568)
Q Consensus 138 ~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~------~~~~-~~~---- 204 (568)
.++..+...++ ++.|..+|+++.+.....+......++..+.+.++ --+|.+++.+..+. ...+ +..
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 34444445555 57899999998875321122222334444333332 23455555554321 1111 111
Q ss_pred ------hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 041458 205 ------TYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLP 265 (568)
Q Consensus 205 ------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 265 (568)
....=.+.+...|+++-|+++-++.... .+.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1111133466788999999999888776 34467889999999999999999998888774
No 241
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.77 E-value=15 Score=36.92 Aligned_cols=77 Identities=12% Similarity=0.062 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcC
Q 041458 207 SFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCME 286 (568)
Q Consensus 207 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 286 (568)
...+..+.+.+++......+.. .+.+...-.....+....|+..+|....+.+-..|.. ....+..++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHC
Confidence 3344556666776665554432 1334444455566667777777777666665544422 445566677776665
Q ss_pred CCH
Q 041458 287 GRW 289 (568)
Q Consensus 287 g~~ 289 (568)
|.+
T Consensus 150 g~l 152 (618)
T 1qsa_A 150 GKQ 152 (618)
T ss_dssp TCS
T ss_pred CCC
Confidence 543
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.04 E-value=3.9 Score=38.44 Aligned_cols=71 Identities=11% Similarity=0.057 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 041458 451 SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE-----KGQMPNETTYTI 522 (568)
Q Consensus 451 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 522 (568)
..++..+...|+.+++...+..+....+- +...|..++.+|.+.|+..+|.+.|+++.+ .|+.|+..+-..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34555566667777777666666643322 566677777777777777777777766543 366776655443
No 243
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.30 E-value=4.8 Score=30.53 Aligned_cols=59 Identities=3% Similarity=0.069 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHH
Q 041458 500 LSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLV 558 (568)
Q Consensus 500 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 558 (568)
+..+-++.+...++.|++.+....+++|.+.+++..|.++++-+..+-......+..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 34455555555666777777777777777777777777777776655544444344433
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.73 E-value=3.7 Score=38.62 Aligned_cols=77 Identities=9% Similarity=0.028 Sum_probs=63.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HcCCCCHHHHHHHH
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQ-----LRQVVSESAVERLV 558 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~l~ 558 (568)
....++..+...|+++++...++.+... .+-+...|..++.++.+.|+..+|.+.|+++. +.|..|...+..+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3456778888999999999999999875 24588999999999999999999999999874 46888877777776
Q ss_pred Hhh
Q 041458 559 MQY 561 (568)
Q Consensus 559 ~~~ 561 (568)
...
T Consensus 252 ~~i 254 (388)
T 2ff4_A 252 ERI 254 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.31 E-value=7.6 Score=39.83 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=35.9
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041458 490 LGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKEL 543 (568)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (568)
+.|...|+++-|.++.++.+.. .+-+..+|..|..+|...|+++.|.-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455567777777777777764 2335677777777777777777777766665
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.24 E-value=19 Score=34.55 Aligned_cols=96 Identities=14% Similarity=0.026 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCC--hh
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKY--GFTPD---SYTYSSLIRGLCMEGLIEEALEIFVVME----EYDYKPD--VD 483 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~~~~p~--~~ 483 (568)
...|...+...|++.+|..++.++... |..+. ...+...+..|...+++.+|..++.++. .....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345677788888888888888887642 21111 2356667778888899999988888764 2222222 23
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 484 NFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 484 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
.+...+..+...+++.+|.+.|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 466777778888899888888877764
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.06 E-value=29 Score=36.56 Aligned_cols=269 Identities=13% Similarity=0.084 Sum_probs=140.3
Q ss_pred HHHhcCChHHHHHHHHHhhhCC--CCCChhHHHHHHHHHHcCCCHHHHHHHHHHhccCCC-------CcCHhhHHHHHHH
Q 041458 247 GLCKEGRTEEAIRFFRDLPSKG--FEPNVVSYNILLRSLCMEGRWEEANELLAEMDGGDR-------SPTIVTYNILIGS 317 (568)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~ 317 (568)
+....|+.++++.++......+ -.+....-..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4567788888888887766421 111222223344445556665667776666543221 0112223334444
Q ss_pred HHhcCC-hHHHHHHHHHHHHCCCCCCccc--HH--HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH--HHHHHhC
Q 041458 318 LAYHGK-TDHALKVLDEMVKGRFRPSAAS--YN--PIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNG--LAMLCGV 390 (568)
Q Consensus 318 ~~~~g~-~~~a~~~~~~~~~~~~~~~~~~--~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 390 (568)
.+..|. -+++.+.+..++... +... .. ++...+.-.|+.+....++..+.+.. .+.....+ ...+...
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhC
Confidence 444443 245566666655532 2111 12 22233456677777777777666532 22222222 3344467
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHH---HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 041458 391 GKVQEAFAIIQSLGNKQNSSPQEFYK---YVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEAL 467 (568)
Q Consensus 391 ~~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 467 (568)
|+.+.+..+.+.+.... . ...-|. ++.-+|+..|+.....+++..+.+. ...+..-...+.-++...|+.+.+.
T Consensus 538 g~~e~~~~li~~L~~~~-d-p~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 538 GRQELADDLITKMLASD-E-SLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-C-HHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CChHHHHHHHHHHHhCC-C-HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 88888888877776531 1 112222 3344567778877777788877753 1222222233333444566666677
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041458 468 EIFVVMEEYDYKPDVDNFNALLLGLCKSRRT-DLSLEVFQMMIEKGQMPNETTYTILVEGI 527 (568)
Q Consensus 468 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 527 (568)
++++.+.+.+ .|....-..+.-+....|.. .++..++..+.. .+|..+-..-+.++
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 7776665543 34444444444455555554 578888888874 34544443333333
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.13 E-value=6 Score=30.07 Aligned_cols=72 Identities=13% Similarity=0.036 Sum_probs=45.7
Q ss_pred CCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC
Q 041458 443 FTPDSYTYSSLIRGLCMEGL---IEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPN 516 (568)
Q Consensus 443 ~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 516 (568)
-.|+..+--.+.+++.+..+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+.+ +.|+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 34555565566666666654 345777777776544222344555666677788888888888887776 3554
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.83 E-value=10 Score=41.66 Aligned_cols=144 Identities=12% Similarity=-0.016 Sum_probs=93.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---------------
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK--------------- 479 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--------------- 479 (568)
...++..+.+.+..+-+.++..-. +-+...--.+..+|...|++++|.++|++... |+.
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccc
Confidence 334556666777777666544322 22333333455667778888888888876421 110
Q ss_pred --------CChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041458 480 --------PDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE----TTYTILVEGIAHQDELELSAEVLKELQLRQ 547 (568)
Q Consensus 480 --------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (568)
.-..-|..++..+-+.|.++.+.++.+.+++.....+. ..|..+.+.+...|++++|...+-.+....
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 01234667778888888889888888887764222222 257888888899999999988887776544
Q ss_pred CCCHHHHHHHHHhhhhcC
Q 041458 548 VVSESAVERLVMQYDFEG 565 (568)
Q Consensus 548 ~~~~~~~~~l~~~~~~~g 565 (568)
. -.+.++.|+...|+.|
T Consensus 969 ~-r~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 969 L-KKSCLLDFVNQLTKQG 985 (1139)
T ss_dssp S-CHHHHHHHHHHHHHHC
T ss_pred H-HHHHHHHHHHHHHhCC
Confidence 3 4667788887777665
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.96 E-value=12 Score=28.94 Aligned_cols=71 Identities=13% Similarity=0.055 Sum_probs=45.0
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC
Q 041458 444 TPDSYTYSSLIRGLCMEGL---IEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPN 516 (568)
Q Consensus 444 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 516 (568)
.|+..+--.+.+++.+... ..+++.+++.+.+.+..-.-...-.+.-++.+.|++++|.++.+.+++ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 4556665666667766654 346777777776543322344445566677788888888888888777 3564
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.02 E-value=9.6 Score=27.25 Aligned_cols=44 Identities=9% Similarity=0.184 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041458 152 AMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLI 195 (568)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 195 (568)
.++-++.+....+.|++.+..+.+++|-+.+++..|.++|+.++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444443
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.80 E-value=17 Score=39.95 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHH
Q 041458 204 FTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNL----VSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNIL 279 (568)
Q Consensus 204 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 279 (568)
.-|.-++..+-+.+.++.+.++-...++...+.+. ..|..+...+...|++++|...+-.+..... -......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 34556666666667777666666655554222121 2466667777777777777777766655432 23455666
Q ss_pred HHHHHcCCCHHHH
Q 041458 280 LRSLCMEGRWEEA 292 (568)
Q Consensus 280 ~~~~~~~g~~~~a 292 (568)
+...|..|..+.-
T Consensus 978 V~~lce~~~~~~L 990 (1139)
T 4fhn_B 978 VNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHCCHHHH
T ss_pred HHHHHhCCChhhh
Confidence 6666666655443
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.73 E-value=9.7 Score=30.29 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhc
Q 041458 277 NILLRSLCMEGRWEEANELLAEMD 300 (568)
Q Consensus 277 ~~l~~~~~~~g~~~~a~~~~~~~~ 300 (568)
.-+..+|.+.+++++|+.+++.+.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCC
Confidence 335556666666666666665553
No 254
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.27 E-value=49 Score=34.88 Aligned_cols=252 Identities=16% Similarity=0.124 Sum_probs=134.3
Q ss_pred HHcCCCHHHHHHHHHHhccCC--CCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-------CCCcccHHHHHHHH
Q 041458 283 LCMEGRWEEANELLAEMDGGD--RSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRF-------RPSAASYNPIIARL 353 (568)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~li~~~ 353 (568)
....|+.++++.++......+ -.+....-..+.-+....|..+++..++...+...- .+....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 456677777877777665421 122223333444556667776778887777665311 01111122222233
Q ss_pred HhcCC-HHHHHHHHHHHhhCCCCCChhhHHH----HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHH--HHHHhcC
Q 041458 354 CSEGK-VDLVVKCLDQMFHRRCKPNEGTYNG----LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVI--TSLCRKG 426 (568)
Q Consensus 354 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g 426 (568)
+-.|. -+++...+..++.... ......+ ...+...|+.+....+++.+.+.. +......+. -++...|
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 33333 2455666666655321 1111112 233456678777777877766532 222333333 3455789
Q ss_pred ChhHHHHHHHHHHHCCCCCChh-hH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHH
Q 041458 427 KTYQAFQLLYEMTKYGFTPDSY-TY---SSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSL 502 (568)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~p~~~-~~---~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 502 (568)
+.+.+..+.+.+... .+.. -| .++.-+|+-.|+.....++++.+.+.. ..+......+.-++...|+.+.+.
T Consensus 539 ~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 539 RQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp CGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred ChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 999999988888763 2322 22 234556778899888888998888642 223333333333445567777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 041458 503 EVFQMMIEKGQMPNETTYTILVEGIAHQDEL-ELSAEVLKELQ 544 (568)
Q Consensus 503 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~ 544 (568)
++++.+.+.+ .|...--..+.-+....|+. .++...+..+.
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 7776665542 33333333333333334443 45666666664
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.23 E-value=33 Score=32.81 Aligned_cols=50 Identities=10% Similarity=0.021 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041458 217 RGVHAAMKLLDDIIAK-----GGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPS 266 (568)
Q Consensus 217 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 266 (568)
++++.|.+.+-.+.+. ...........++..|.+.|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5677777766555432 2233455667777888888888887776665543
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.45 E-value=17 Score=27.63 Aligned_cols=46 Identities=9% Similarity=0.163 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041458 151 YAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQ 196 (568)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 196 (568)
+..+-++.+....+.|++....+.+++|-+.+|+..|.++|+-++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444455555555555555555555555555555443
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.75 E-value=9.2 Score=33.25 Aligned_cols=53 Identities=21% Similarity=0.225 Sum_probs=30.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 041458 457 LCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 457 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
..+.|.++++++....-.+..+. |...-..++..+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34556666666666555554433 555555566666666666666666665555
No 258
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.20 E-value=26 Score=28.94 Aligned_cols=56 Identities=11% Similarity=-0.046 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 041458 460 EGLIEEALEIFVVMEEYDYKP-DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP 515 (568)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 515 (568)
.+...++.++|..|...|+.- -...|......+...|++++|.++|+..++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444678888888887655543 34567777778888888888888888888877777
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.97 E-value=11 Score=30.02 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=29.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC-CCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041458 419 ITSLCRKGKTYQAFQLLYEMTKYG-FTPDS-------YTYSSLIRGLCMEGLIEEALEIFVVME 474 (568)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~~~~~-~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~ 474 (568)
+..+...|.++.|+-+.+.+.... ..|+. .++..+.+++...|++.+|...|++..
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 444555555655555555433210 12221 244556666666777777777776653
No 260
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.68 E-value=19 Score=31.41 Aligned_cols=21 Identities=5% Similarity=-0.057 Sum_probs=8.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCC
Q 041458 356 EGKVDLVVKCLDQMFHRRCKP 376 (568)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~ 376 (568)
.++......+++.+.+.|..+
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCS
T ss_pred ccccchHHHHHHHHHHcCCCC
Confidence 333333344444444444443
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.64 E-value=37 Score=30.46 Aligned_cols=25 Identities=12% Similarity=-0.116 Sum_probs=14.5
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHH
Q 041458 307 TIVTYNILIGSLAYHGKTDHALKVL 331 (568)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (568)
|+.....+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4455555666666666666665544
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.60 E-value=18 Score=25.74 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHH
Q 041458 218 GVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLA 297 (568)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 297 (568)
..++|..+-+-+...+. ...+--+-+..+.+.|++++|..+.+... .||...|-+|.. .+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555444432 11111122334556677777766655443 566666655433 45666666666666
Q ss_pred HhccCC
Q 041458 298 EMDGGD 303 (568)
Q Consensus 298 ~~~~~~ 303 (568)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 665555
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.52 E-value=19 Score=34.32 Aligned_cols=62 Identities=8% Similarity=0.046 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041458 170 TYNSLVRGLCMLGNLNQSLQFLDRLIQK--GLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIA 231 (568)
Q Consensus 170 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 231 (568)
++..+...|.+.|++++|.+.|.++... +...-...+-.+++.+...+++..+...+.++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5666777788888888888888877654 2222345566667777777777777777776643
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.27 E-value=15 Score=31.94 Aligned_cols=119 Identities=21% Similarity=0.196 Sum_probs=71.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHccCC
Q 041458 420 TSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK--PDVDNFNALLLGLCKSRR 497 (568)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~ 497 (568)
....+.|++++|++....-++.. +-|...=..|+..+|-.|++++|.+-++...+.... |....|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE----- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA----- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-----
Confidence 34567788888888888777763 336666778888888899999998888887764221 1222344443321
Q ss_pred hHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHcCCC
Q 041458 498 TDLSLEVFQMMIEKGQM-----PNETTYTILVEGIA--HQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 498 ~~~a~~~~~~m~~~g~~-----p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~ 549 (568)
..=++...-+-. ....-...++.+.. ..|+.++|..+-.++.+.-+.
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 111122211111 12334445555544 468999999888888776443
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.12 E-value=18 Score=25.70 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHHHHHHH
Q 041458 218 GVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEANELLA 297 (568)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 297 (568)
..++|..+-+-+...+. ...+--+-+..+.+.|++++|..+.+... .||...|-+|.. .+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555544432 11111222334566777777777665543 566666655543 35566666666666
Q ss_pred HhccCC
Q 041458 298 EMDGGD 303 (568)
Q Consensus 298 ~~~~~~ 303 (568)
++..+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 666555
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.83 E-value=46 Score=30.13 Aligned_cols=167 Identities=11% Similarity=0.036 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHhCCCHHHHHHHH----HHHhhCCCCCChhhHHHHHHH
Q 041458 346 YNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEGTYNGLAMLCGVGKVQEAFAII----QSLGNKQNSSPQEFYKYVITS 421 (568)
Q Consensus 346 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~li~~ 421 (568)
|.++..-|.+.+++++|++++..- ...+.+.|+...|.++- +...+.+.+++......++..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G--------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV--------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 445566688899999998876543 33455566665555443 555666777777777777776
Q ss_pred HHhcCChh-HHHHHHHHHHH----CC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 041458 422 LCRKGKTY-QAFQLLYEMTK----YG--FTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCK 494 (568)
Q Consensus 422 ~~~~g~~~-~A~~~~~~~~~----~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 494 (568)
+......+ .=..+.+++++ .| ..-|+.....+...|.+.+++.+|...|- .|-.+....+..++.-+..
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHH
Confidence 66554322 11223333331 22 22345555667777778888877777662 1323333555555444444
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 495 SRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 495 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (568)
.+...++ |...-..++. |.-.++...|..+++...+
T Consensus 180 ~~~~~e~--------------dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 180 QDESHTA--------------PLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp TSCGGGH--------------HHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred hcCCccH--------------HHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 3332222 2222333333 5557788888887666543
No 267
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=75.59 E-value=6.8 Score=35.97 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhh
Q 041458 241 YNVLLTGLCKEGRTEEAIRFFRDLP 265 (568)
Q Consensus 241 ~~~ll~~~~~~g~~~~A~~~~~~~~ 265 (568)
...+|.-|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4566777777788888888887765
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.36 E-value=34 Score=32.54 Aligned_cols=97 Identities=13% Similarity=-0.018 Sum_probs=63.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHhhHHHH--
Q 041458 135 SYTYLVNCLCKKGNVGYAMQLVEKMEDY--GYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQK-GLVPNAFTYSFL-- 209 (568)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~l-- 209 (568)
+...+...|.+.|+++.|.+.+.++... +...-...+-.+++.+...+++..+...+.+.... .-.+|....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677888888999999999999888754 22334567778888899999999998888887542 111222221111
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHH
Q 041458 210 --LEAAYKERGVHAAMKLLDDIIA 231 (568)
Q Consensus 210 --i~~~~~~~~~~~a~~~~~~~~~ 231 (568)
...+...+++..|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1112345677777776666544
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.09 E-value=52 Score=29.49 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=18.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041458 446 DSYTYSSLIRGLCMEGLIEEALEIFV 471 (568)
Q Consensus 446 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 471 (568)
++.....+...|.+.|++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 45566677777778888877777663
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=70.73 E-value=62 Score=29.32 Aligned_cols=25 Identities=16% Similarity=0.009 Sum_probs=14.0
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHH
Q 041458 307 TIVTYNILIGSLAYHGKTDHALKVL 331 (568)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (568)
|......+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4444455555666666666665554
No 271
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=69.25 E-value=45 Score=27.12 Aligned_cols=10 Identities=10% Similarity=0.222 Sum_probs=3.8
Q ss_pred CCCHHHHHHH
Q 041458 286 EGRWEEANEL 295 (568)
Q Consensus 286 ~g~~~~a~~~ 295 (568)
.|+.+....+
T Consensus 15 ~g~~~~v~~l 24 (201)
T 3hra_A 15 QRDTKKVKEI 24 (201)
T ss_dssp TTCHHHHHHH
T ss_pred hccHHHHHHH
Confidence 3343333333
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=66.63 E-value=84 Score=29.31 Aligned_cols=298 Identities=10% Similarity=-0.034 Sum_probs=157.2
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCC---ChhHHHHHHHHHHcC-CCHHHHHHHHHHhccCCCCcCHhhH-
Q 041458 238 LVSYNVLLTGLCKEGRTEEAIRFFRDLPSK-GFEP---NVVSYNILLRSLCME-GRWEEANELLAEMDGGDRSPTIVTY- 311 (568)
Q Consensus 238 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~- 311 (568)
......|...|.+.|+.++..+++.....- +.-| .......++..+... +..+.-.++..+..+.. ..+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 455667889999999999999999876532 0011 234456777777664 33444444444443321 1122333
Q ss_pred -----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-----ccHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCChh
Q 041458 312 -----NILIGSLAYHGKTDHALKVLDEMVKGRFRPSA-----ASYNPIIARLCSEGKVDLVVKCLDQMFHR--RCKPNEG 379 (568)
Q Consensus 312 -----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 379 (568)
..++..|...|++.+|.+++.++.+.=-+.|. .++..-+..|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 26788999999999999888888763112222 22444456778889999998888877543 2223333
Q ss_pred hHHH-----HHHHH-hCCCHHHHHHHHHHHhhCCCCCChh----hHHHHHHHHHhcCChhHHHHHHH-HHHHCCCCCChh
Q 041458 380 TYNG-----LAMLC-GVGKVQEAFAIIQSLGNKQNSSPQE----FYKYVITSLCRKGKTYQAFQLLY-EMTKYGFTPDSY 448 (568)
Q Consensus 380 ~~~~-----~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~p~~~ 448 (568)
.... ...+. ..+++..|...|-+........... ....++-+-.-.++..+-..++. +....-..|...
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHH
Confidence 3222 45566 7888888888887664322111211 11122222222333333333332 211111234444
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041458 449 TYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIA 528 (568)
Q Consensus 449 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 528 (568)
.+..++.++ ..+++.+..++++.... .+..|......+ ..+.+ .--...+.++.+ +-...++..+...+.
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~-~~L~~----~Ir~~~L~~i~~---pYsrIsl~~iA~~l~ 327 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHL-GTLYD----TMLEQNLCRIIE---PYSRVQVAHVAESIQ 327 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHH-HHHHH----HHHHHHHHHHHT---TCSEEEHHHHHHHHT
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHH-HHHHH----HHHHHHHHHHhH---hhceeeHHHHHHHHC
Confidence 455555554 45677666666655432 233344321111 10000 000111112221 224455666655554
Q ss_pred hcCChhHHHHHHHHHHHcCC
Q 041458 529 HQDELELSAEVLKELQLRQV 548 (568)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~~ 548 (568)
- ..++++..+-+|+..|.
T Consensus 328 l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 328 L--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp C--CHHHHHHHHHHHHHTTS
T ss_pred c--CHHHHHHHHHHHHHCCC
Confidence 3 57888888888887764
No 273
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=64.53 E-value=26 Score=23.79 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=34.7
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCC-CHHHHHHHHHhhhhcCC
Q 041458 507 MMIEKGQMPNETTYTILVEGIAHQD-ELELSAEVLKELQLRQVV-SESAVERLVMQYDFEGI 566 (568)
Q Consensus 507 ~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 566 (568)
.+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.++. +..++.+.+..++..|+
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34456666655443 3344444443 344466677777666654 77777777777777664
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=63.23 E-value=38 Score=24.12 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=24.8
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 041458 107 DLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYG 163 (568)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 163 (568)
.+..+|++++|..+.+... .||...|.+|. -.+.|..+++...+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 3445556655555443332 35555555442 234555555555554554443
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=62.98 E-value=53 Score=25.68 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHHHHHHHHh
Q 041458 500 LSLEVFQMMIEKGQMP-NETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESAVERLVMQ 560 (568)
Q Consensus 500 ~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 560 (568)
++.++|+.|..+|+.- -...|......+...|++++|.++++..++.+-.|.+.+..--..
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~ 144 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRL 144 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 3667777777766543 345566666666777777777777777777777666655544433
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=62.45 E-value=39 Score=24.07 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=25.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 041458 107 DLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKMEDYG 163 (568)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 163 (568)
.+..+|++++|..+.+... .||...|.+|. -.+.|..+++...+.++...|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 3455566666655544332 45555555542 234555555555554554443
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.67 E-value=70 Score=26.36 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=38.5
Q ss_pred CChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041458 426 GKTYQAFQLLYEMTKYGFTPD-SYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKP 480 (568)
Q Consensus 426 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 480 (568)
+...++.++|..|...|+--. +..|......+...|++.+|.++|+.-.+.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 446677788887777665543 3456666777777788888888888777766665
No 278
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=58.94 E-value=63 Score=25.27 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMT 439 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~ 439 (568)
.+.++.-|...|+.++|.+.++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 5566777777777777777777764
No 279
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=58.85 E-value=83 Score=28.19 Aligned_cols=30 Identities=3% Similarity=-0.087 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 520 YTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 520 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
+..-+....+.+++..|..+.+++++.++.
T Consensus 210 Lr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 210 LQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 344445555666666666666666666654
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=58.30 E-value=90 Score=26.88 Aligned_cols=22 Identities=5% Similarity=-0.043 Sum_probs=9.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCC
Q 041458 425 KGKTYQAFQLLYEMTKYGFTPD 446 (568)
Q Consensus 425 ~g~~~~A~~~~~~~~~~~~~p~ 446 (568)
.++.....++++.+.+.|..++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSS
T ss_pred ccccchHHHHHHHHHHcCCCCC
Confidence 3443333444444555554443
No 281
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=58.29 E-value=95 Score=27.14 Aligned_cols=16 Identities=13% Similarity=-0.010 Sum_probs=8.0
Q ss_pred HHHcCCCHHHHHHHHH
Q 041458 282 SLCMEGRWEEANELLA 297 (568)
Q Consensus 282 ~~~~~g~~~~a~~~~~ 297 (568)
..+..|+.+-+..+++
T Consensus 37 ~A~~~g~~~~v~~Ll~ 52 (285)
T 3kea_A 37 YAIADNNVRLVCTLLN 52 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3344566655544444
No 282
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.90 E-value=61 Score=24.47 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 041458 415 YKYVITSLCRKGKTYQAFQLLYEMT 439 (568)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~~ 439 (568)
...++.-|...|+.++|.+.++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4455666666666666666666653
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=56.23 E-value=74 Score=25.24 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 041458 466 ALEIFVVMEEYDYKP-DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNE 517 (568)
Q Consensus 466 a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 517 (568)
+.++|..|...|+-- -...|......+-..|++.+|.++|+..++.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 556677776655543 2344566666666777777777777777776666643
No 284
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=54.96 E-value=18 Score=32.44 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhh
Q 041458 241 YNVLLTGLCKEGRTEEAIRFFRDLP 265 (568)
Q Consensus 241 ~~~ll~~~~~~g~~~~A~~~~~~~~ 265 (568)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3456666666677777777776654
No 285
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=53.99 E-value=51 Score=25.46 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=34.7
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CHHHHHHHHHhhhhcCC
Q 041458 507 MMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV-SESAVERLVMQYDFEGI 566 (568)
Q Consensus 507 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 566 (568)
.+.+.|++++..=. .++..+...+..-.|.++++.+.+.++. +..++.+-+..+...|+
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34556666554332 2333444444445567777777766655 77777777777776664
No 286
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=53.38 E-value=86 Score=25.31 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=8.5
Q ss_pred HHhcCChHHHHHHHH
Q 041458 318 LAYHGKTDHALKVLD 332 (568)
Q Consensus 318 ~~~~g~~~~a~~~~~ 332 (568)
.+..|+.+....++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 345666666555553
No 287
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=53.07 E-value=48 Score=25.85 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=35.0
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CHHHHHHHHHhhhhcCC
Q 041458 507 MMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV-SESAVERLVMQYDFEGI 566 (568)
Q Consensus 507 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 566 (568)
.+.+.|++++..= ..++..+...+..-.|.++++.+.+.++. +..++.+-+..+...|+
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3455665554322 23344454555555677777777777665 77777777777777764
No 288
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=52.44 E-value=2e+02 Score=29.05 Aligned_cols=42 Identities=17% Similarity=0.111 Sum_probs=23.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH
Q 041458 173 SLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYK 215 (568)
Q Consensus 173 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 215 (568)
.+|-.|.|+|+.++|.++.++.... +.--...+...+..|+.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 4677788888888888888765432 11111355555666653
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=51.91 E-value=1e+02 Score=25.68 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=8.6
Q ss_pred HHHHHhCCCHHHHHHHHHH
Q 041458 384 LAMLCGVGKVQEAFAIIQS 402 (568)
Q Consensus 384 ~~~~~~~~~~~~a~~~~~~ 402 (568)
+...+..|+.+-...+++.
T Consensus 83 l~~A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDS 101 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3344445555444444443
No 290
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=51.75 E-value=1e+02 Score=25.91 Aligned_cols=54 Identities=9% Similarity=0.055 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCHHH
Q 041458 500 LSLEVFQMMIEKGQMP-NETTYTILVEGIAHQDELELSAEVLKELQLRQVVSESA 553 (568)
Q Consensus 500 ~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 553 (568)
++.++|+.|..+|+.- -...|......+...|++++|.++++..++.+-.|.+.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 3444444444444332 23334444444444455555555555555544444433
No 291
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=51.48 E-value=1.5e+02 Score=27.53 Aligned_cols=296 Identities=10% Similarity=-0.016 Sum_probs=160.9
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---CCHhhHHHHHHHHHhc-CChHHHHHHHHHhhhCCCCCChhHH-
Q 041458 203 AFTYSFLLEAAYKERGVHAAMKLLDDIIAKG-GK---PNLVSYNVLLTGLCKE-GRTEEAIRFFRDLPSKGFEPNVVSY- 276 (568)
Q Consensus 203 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~---~~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~- 276 (568)
......+...|.+.|+.++..+++......= .- -.......+++.+... +..+.-.++..+..+..-. +..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3456678889999999999999888764321 01 1234566788887664 3444444554444332111 22333
Q ss_pred -----HHHHHHHHcCCCHHHHHHHHHHhccCCCCcC-----HhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCcc
Q 041458 277 -----NILLRSLCMEGRWEEANELLAEMDGGDRSPT-----IVTYNILIGSLAYHGKTDHALKVLDEMVKG--RFRPSAA 344 (568)
Q Consensus 277 -----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~ 344 (568)
.-++..|...|++.+|.+++.++.+.=-..| ...+..-+..|...++..++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2578899999999999988888765211112 234555677888999999999999887643 2223333
Q ss_pred cHHHH----HHHHH-hcCCHHHHHHHHHHHhhCCCCCChh------hHHHHHHHHhCCCHHHHHHHHH-HHhhCCCCCCh
Q 041458 345 SYNPI----IARLC-SEGKVDLVVKCLDQMFHRRCKPNEG------TYNGLAMLCGVGKVQEAFAIIQ-SLGNKQNSSPQ 412 (568)
Q Consensus 345 ~~~~l----i~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~ 412 (568)
....+ ...+. ..+++..|...|-+....-...... .|..+.... .++..+-..++. ........|..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl-~~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM-LGQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-TTCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH-cCCHHHHHHHhccccccccCCccH
Confidence 22211 12345 7899999998887775432122211 111122222 233222223222 21122233444
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVDNFNALLLGL 492 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 492 (568)
..+..++.+| ..+++.+...++..... .+..|...... +..+.+ .-.+. .+.++.+ +-...++..+...+
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h-~~~L~~-~Ir~~---~L~~i~~---pYsrIsl~~iA~~l 326 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAH-LGTLYD-TMLEQ---NLCRIIE---PYSRVQVAHVAESI 326 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHH-HHHHHH-HHHHH---HHHHHHT---TCSEEEHHHHHHHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHH-HHHHHH-HHHHH---HHHHHhH---hhceeeHHHHHHHH
Confidence 4455555554 55677777777665433 24444432111 111100 00011 1111221 12445666666665
Q ss_pred HccCChHHHHHHHHHHHHCC
Q 041458 493 CKSRRTDLSLEVFQMMIEKG 512 (568)
Q Consensus 493 ~~~g~~~~a~~~~~~m~~~g 512 (568)
.- ..++++..+-+|+..|
T Consensus 327 ~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 327 QL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp TC--CHHHHHHHHHHHHHTT
T ss_pred Cc--CHHHHHHHHHHHHHCC
Confidence 43 6889999999999764
No 292
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=51.37 E-value=1e+02 Score=25.54 Aligned_cols=16 Identities=0% Similarity=-0.128 Sum_probs=7.5
Q ss_pred HHccCChHHHHHHHHH
Q 041458 492 LCKSRRTDLSLEVFQM 507 (568)
Q Consensus 492 ~~~~g~~~~a~~~~~~ 507 (568)
..+.|+.+-+.-+++.
T Consensus 217 A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 217 AKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHh
Confidence 3445555544444443
No 293
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=50.75 E-value=52 Score=25.08 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=29.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCC-CHHHHHHHHHhhhhcCC
Q 041458 508 MIEKGQMPNETTYTILVEGIAHQD-ELELSAEVLKELQLRQVV-SESAVERLVMQYDFEGI 566 (568)
Q Consensus 508 m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 566 (568)
+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.++. +..++.+-+..+...|+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 3445555544322 2233344333 344566666666666554 66666666666666554
No 294
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=49.01 E-value=52 Score=25.63 Aligned_cols=59 Identities=19% Similarity=0.186 Sum_probs=32.3
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCC-CHHHHHHHHHhhhhcCC
Q 041458 507 MMIEKGQMPNETTYTILVEGIAHQD-ELELSAEVLKELQLRQVV-SESAVERLVMQYDFEGI 566 (568)
Q Consensus 507 ~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 566 (568)
.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.++. +..++.+-+..+...|+
T Consensus 7 ~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 7 ALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 34455555554332 2333343333 344566666666666655 66666666666666664
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.24 E-value=1.2e+02 Score=25.77 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=38.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC--CCCC----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 041458 175 VRGLCMLGNLNQSLQFLDRLIQK--GLVP----NAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGL 248 (568)
Q Consensus 175 i~~~~~~g~~~~a~~~~~~m~~~--~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 248 (568)
++.+....++++|.+++++..+. +..+ +.......+..-.....-.-+..+.+++ .. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHHH
Confidence 45556666666666666655431 1111 1111122222222222222333333333 22 23344444455566
Q ss_pred HhcCChHHHHHHHHHh
Q 041458 249 CKEGRTEEAIRFFRDL 264 (568)
Q Consensus 249 ~~~g~~~~A~~~~~~~ 264 (568)
.+.|+.++|.++|-+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 6666666666666544
No 296
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=46.79 E-value=99 Score=27.64 Aligned_cols=23 Identities=4% Similarity=0.222 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 041458 102 TNLLYDLCKANKMKKAIKVMEMM 124 (568)
Q Consensus 102 ~~l~~~~~~~~~~~~A~~~~~~~ 124 (568)
..++.-|...|+.++|...++++
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34566666667777776666664
No 297
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.17 E-value=1.3e+02 Score=25.07 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=10.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC
Q 041458 212 AAYKERGVHAAMKLLDDIIAKG 233 (568)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~ 233 (568)
..++.|+.+.+..+++.+.+.|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 3344455555544544444443
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.62 E-value=93 Score=25.90 Aligned_cols=12 Identities=0% Similarity=-0.310 Sum_probs=4.8
Q ss_pred HhcCCHHHHHHH
Q 041458 458 CMEGLIEEALEI 469 (568)
Q Consensus 458 ~~~g~~~~a~~~ 469 (568)
.+.|+.+-+.-+
T Consensus 218 ~~~~~~~~v~~L 229 (240)
T 3eu9_A 218 KQRKNVWMINHL 229 (240)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHcCcHHHHHHH
Confidence 334444433333
No 299
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=44.69 E-value=49 Score=25.59 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=32.4
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CHHHHHHHHHhhhhcCC
Q 041458 507 MMIEKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLRQVV-SESAVERLVMQYDFEGI 566 (568)
Q Consensus 507 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 566 (568)
.+.+.|++++..=. .++..+...+ .-.|.++++.+.+.++. +..++.+-+..+...|+
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34445666554322 2233333444 44566777777666655 66777777777666664
No 300
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=44.67 E-value=2e+02 Score=26.88 Aligned_cols=333 Identities=15% Similarity=0.171 Sum_probs=148.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCcHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHH
Q 041458 139 LVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVT--YNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAF--TYSFLLEAAY 214 (568)
Q Consensus 139 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~ 214 (568)
.+...+..|+.+-+..+ .+.|..++... ..+.+...+..|+.+-+..+++ .|..++.. .-.+.+...+
T Consensus 17 ~L~~Aa~~g~~~~v~~L----l~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHHTCHHHHHHH----HHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHH
Confidence 34445566776655444 44555554321 2234555566777665554443 34333221 1123445556
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHhh--HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCCCHHHH
Q 041458 215 KERGVHAAMKLLDDIIAKGGKPNLVS--YNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCMEGRWEEA 292 (568)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 292 (568)
..|+.+-+.- +.+.|..++... -.+.+...+..|+.+.+..+++.-..... .+...++ .+...+..|+.+-+
T Consensus 89 ~~g~~~~v~~----Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t-~L~~A~~~g~~~~v 162 (437)
T 1n11_A 89 RIGHTNMVKL----LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC-MTKKGFT-PLHVAAKYGKVRVA 162 (437)
T ss_dssp HHTCHHHHHH----HHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCC-HHHHHHHTTCHHHH
T ss_pred HCCCHHHHHH----HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcC-CCCCCCC-HHHHHHHcCCHHHH
Confidence 6777654444 344454443211 11234455677887777666654322111 1222222 33344566776655
Q ss_pred HHHHHHhccCCCCcCH---hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccH--HHHHHHHHhcCCHHHHHHHHH
Q 041458 293 NELLAEMDGGDRSPTI---VTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASY--NPIIARLCSEGKVDLVVKCLD 367 (568)
Q Consensus 293 ~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~ 367 (568)
..+++. +..++. .-. ..+...+..|+.+- ++.+.+.|..++...+ ...+...+..|+.+-+..+
T Consensus 163 ~~Ll~~----g~~~~~~~~~g~-t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L-- 231 (437)
T 1n11_A 163 ELLLER----DAHPNAAGKNGL-TPLHVAVHHNNLDI----VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL-- 231 (437)
T ss_dssp HHHHHT----TCCTTCCCSSCC-CHHHHHHHTTCHHH----HHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHH--
T ss_pred HHHHhC----CCCCCCCCCCCC-CHHHHHHHcCCHHH----HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH--
Confidence 555443 322221 111 22334455666543 3444455544433221 1234444566766544443
Q ss_pred HHhhCCCCCChh---hHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 041458 368 QMFHRRCKPNEG---TYNGLAMLCGVGKVQEAFAIIQSLGNKQNSSP---QEFYKYVITSLCRKGKTYQAFQLLYEMTKY 441 (568)
Q Consensus 368 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 441 (568)
.+.+..++.. -...+...+..|..+-...+++ .+..++ ..-.+.+ ...++.|+.+-+ +.+.+.
T Consensus 232 --l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L-~~A~~~~~~~~~----~~Ll~~ 300 (437)
T 1n11_A 232 --LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS----KQANGNLGNKSGLTPL-HLVAQEGHVPVA----DVLIKH 300 (437)
T ss_dssp --HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTCCCHH-HHHHHHTCHHHH----HHHHHH
T ss_pred --HHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh----cCCCCCCCCCCCCCHH-HHHHHcCCHHHH----HHHHhC
Confidence 3444433322 1223555566777665544443 222221 1112222 233455665433 333444
Q ss_pred CCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 041458 442 GFTPDS---YTYSSLIRGLCMEGLIEEALEIFVVMEEYDYKPDVD---NFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP 515 (568)
Q Consensus 442 ~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 515 (568)
|..++. .-.+.| ...+..|+.+-+ +.+.+.|..++.. -++.|.. .+..|+.+ +++.+.+.|..|
T Consensus 301 g~~~~~~~~~g~t~L-~~A~~~g~~~~v----~~Ll~~gad~n~~~~~g~t~L~~-A~~~g~~~----iv~~Ll~~ga~~ 370 (437)
T 1n11_A 301 GVMVDATTRMGYTPL-HVASHYGNIKLV----KFLLQHQADVNAKTKLGYSPLHQ-AAQQGHTD----IVTLLLKNGASP 370 (437)
T ss_dssp TCCTTCCCSSCCCHH-HHHHHSSCSHHH----HHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHH----HHHHHHHTTCCS
T ss_pred CccCCCCCCCCCCHH-HHHHHcCcHHHH----HHHHhcCCCCCCCCCCCCCHHHH-HHHCChHH----HHHHHHHCcCCC
Confidence 444332 222333 334455665533 3344455544332 2333333 34455543 444555666666
Q ss_pred CH
Q 041458 516 NE 517 (568)
Q Consensus 516 ~~ 517 (568)
+.
T Consensus 371 ~~ 372 (437)
T 1n11_A 371 NE 372 (437)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.05 E-value=1.5e+02 Score=25.21 Aligned_cols=89 Identities=11% Similarity=0.073 Sum_probs=45.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC--CCCC----CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 041458 104 LLYDLCKANKMKKAIKVMEMMVSS--GIIP----DASSYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRG 177 (568)
Q Consensus 104 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 177 (568)
-+..+....++++|.++.++..+. +..+ +.......+..-.....-.-+..+.+.+.. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 567778888899998888876542 1111 111112222222222222233333334422 2345555556666
Q ss_pred HHhcCChHHHHHHHHHHH
Q 041458 178 LCMLGNLNQSLQFLDRLI 195 (568)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~ 195 (568)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 666777777766665543
No 302
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=44.01 E-value=1.3e+02 Score=24.55 Aligned_cols=17 Identities=18% Similarity=0.024 Sum_probs=7.6
Q ss_pred CHhhHHHHHHHHHhcCC
Q 041458 132 DASSYTYLVNCLCKKGN 148 (568)
Q Consensus 132 ~~~~~~~li~~~~~~g~ 148 (568)
|..+-...+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 44444444444444444
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.41 E-value=86 Score=24.85 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 041458 150 GYAMQLVEKMEDYGYPT-NTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPN 202 (568)
Q Consensus 150 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 202 (568)
+++.++|..|...|+-. -...|......+-..|++.+|.++|..-++.+..|-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 34556666666555432 234455556666666666666666666666555543
No 304
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=43.04 E-value=1.4e+02 Score=24.73 Aligned_cols=217 Identities=11% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhHHHHHHHHHHc
Q 041458 208 FLLEAAYKERGVHAAMKLLDDIIAKGGKPNL--VSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFEPNVVSYNILLRSLCM 285 (568)
Q Consensus 208 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 285 (568)
+.+...+..|+.+ +++.+.+.|..++. ..-.+.+...+..|+.+-+..+++. ...+......-.+.+...+.
T Consensus 13 t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~ 86 (237)
T 3b7b_A 13 SPLHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPKDAEGSTCLHLAAK 86 (237)
T ss_dssp CHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCCCCCCCcHHHHHHH
Q ss_pred CCCHHHHHHHHHHhccCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHH--HHHHHHhcCCHHHHH
Q 041458 286 EGRWEEANELLAEMDGGDRSPTIVTYNILIGSLAYHGKTDHALKVLDEMVKGRFRPSAASYNP--IIARLCSEGKVDLVV 363 (568)
Q Consensus 286 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~~~~~~a~ 363 (568)
.|+.+-+..+++.-...--..+..-.+.+..+..... .++++.+.+.|..++...... .+...+..|+.+
T Consensus 87 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~--- 158 (237)
T 3b7b_A 87 KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH-----VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD--- 158 (237)
T ss_dssp TTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH---
T ss_pred cCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH---
Q ss_pred HHHHHHhhCCCCCChhhHHH---HHHHHhCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 364 KCLDQMFHRRCKPNEGTYNG---LAMLCGVGKVQEAFAIIQSLGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTK 440 (568)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 440 (568)
+++.+.+.+..++...... +...+..|+.+-...+++. ...+......-...+...+..|+...++++.+.+.+
T Consensus 159 -~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 159 -IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR--DSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp -HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc--CCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred C
Q 041458 441 Y 441 (568)
Q Consensus 441 ~ 441 (568)
.
T Consensus 236 s 236 (237)
T 3b7b_A 236 S 236 (237)
T ss_dssp C
T ss_pred c
No 305
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=42.90 E-value=1.8e+02 Score=25.91 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=2.8
Q ss_pred HHcCCHH
Q 041458 214 YKERGVH 220 (568)
Q Consensus 214 ~~~~~~~ 220 (568)
++.|+++
T Consensus 33 v~~g~~~ 39 (337)
T 4g8k_A 33 VQNEDVD 39 (337)
T ss_dssp HHTTCHH
T ss_pred HHcCCHH
Confidence 3344433
No 306
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=41.78 E-value=85 Score=24.81 Aligned_cols=56 Identities=13% Similarity=0.158 Sum_probs=30.6
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCC-CHHHHHHHHHhhhhcCC
Q 041458 510 EKGQMPNETTYTILVEGIAHQDELELSAEVLKELQLR--QVV-SESAVERLVMQYDFEGI 566 (568)
Q Consensus 510 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~ 566 (568)
+.|++++..= ..++..+...+..=.|.++++.+.+. ++. +..++.+-+..+...|+
T Consensus 26 ~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 26 QGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3455554422 23344455555555566666666665 444 66666666666666654
No 307
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=41.21 E-value=1.4e+02 Score=27.02 Aligned_cols=13 Identities=0% Similarity=-0.123 Sum_probs=5.5
Q ss_pred HhcCChHHHHHHH
Q 041458 319 AYHGKTDHALKVL 331 (568)
Q Consensus 319 ~~~g~~~~a~~~~ 331 (568)
+..|+.+-+..++
T Consensus 181 ~~~g~~~~v~~Ll 193 (364)
T 3ljn_A 181 MEFRNREALDLMM 193 (364)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3445544433333
No 308
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=40.27 E-value=2e+02 Score=25.63 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=6.6
Q ss_pred HHhcCChHHHHHHH
Q 041458 318 LAYHGKTDHALKVL 331 (568)
Q Consensus 318 ~~~~g~~~~a~~~~ 331 (568)
.+..|+.+-+..++
T Consensus 175 A~~~g~~~~v~~LL 188 (337)
T 4g8k_A 175 AAEKGHVEVLKILL 188 (337)
T ss_dssp HHHHTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHH
Confidence 34556655444333
No 309
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=39.29 E-value=1.1e+02 Score=27.50 Aligned_cols=30 Identities=7% Similarity=-0.054 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041458 520 YTILVEGIAHQDELELSAEVLKELQLRQVV 549 (568)
Q Consensus 520 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 549 (568)
+..-+....+++++..|..+.+++++.++.
T Consensus 201 Lr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 201 LRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 334445555666666666666666666554
No 310
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=38.37 E-value=1e+02 Score=25.59 Aligned_cols=48 Identities=8% Similarity=0.141 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCCCCChh--hH-----HHHHHHHHccCChHHHHHHHHHHHH
Q 041458 463 IEEALEIFVVMEEYDYKPDVD--NF-----NALLLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 463 ~~~a~~~~~~m~~~~~~p~~~--~~-----~~li~~~~~~g~~~~a~~~~~~m~~ 510 (568)
++.|+.+|+.+.+...-++.. .- ...+-.|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 567777777776432111111 11 1223345666666666666666654
No 311
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=38.24 E-value=2.4e+02 Score=25.85 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC--hHHHHHHHHHhh
Q 041458 205 TYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGR--TEEAIRFFRDLP 265 (568)
Q Consensus 205 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~A~~~~~~~~ 265 (568)
....+|.-|...++.++|...++++..... .......++......++ -+.+-.++..+.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~ 116 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLC 116 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 346778889999999999999988643211 12223334443333332 344556666655
No 312
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=37.46 E-value=51 Score=24.89 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=24.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCC-CHHHHHHHHHhhhhcCC
Q 041458 524 VEGIAHQDELELSAEVLKELQLRQVV-SESAVERLVMQYDFEGI 566 (568)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 566 (568)
+..+...+..-.|.++++.+.+.++. +..++.+.+..+...|+
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 33444444444566666666665554 66666666666666554
No 313
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=37.20 E-value=39 Score=29.04 Aligned_cols=22 Identities=0% Similarity=0.061 Sum_probs=10.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCC
Q 041458 108 LCKANKMKKAIKVMEMMVSSGI 129 (568)
Q Consensus 108 ~~~~~~~~~A~~~~~~~~~~~~ 129 (568)
.++.|+.+....+++.+.+.|.
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~ 33 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKK 33 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCC
Confidence 3344555555555554444443
No 314
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=35.85 E-value=56 Score=27.98 Aligned_cols=19 Identities=11% Similarity=-0.001 Sum_probs=8.3
Q ss_pred hcCChhhHHHHHHHHHhCC
Q 041458 145 KKGNVGYAMQLVEKMEDYG 163 (568)
Q Consensus 145 ~~g~~~~a~~~~~~~~~~~ 163 (568)
+.|+.+....+++.+.+.|
T Consensus 14 ~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHTCGGGGTTHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 3444444444444444333
No 315
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.02 E-value=33 Score=21.00 Aligned_cols=36 Identities=11% Similarity=0.290 Sum_probs=19.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHH
Q 041458 503 EVFQMMIEKGQMPNETTYTILVEGIAHQDE--LELSAEVLKEL 543 (568)
Q Consensus 503 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~~ 543 (568)
+.++++++.|+.++... .++.+.|+ ++.|.+++.+|
T Consensus 11 qmlq~L~eMGFd~erae-----~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 11 QMLQELVNAGCDQEMAG-----RALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHCCHHHHH-----HHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHH-----HHHHHhCcccHHHHHHHHHHh
Confidence 34455555555543222 24445555 67777776665
No 316
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=34.60 E-value=2.9e+02 Score=25.76 Aligned_cols=332 Identities=16% Similarity=0.148 Sum_probs=158.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHH--HHHHHHHHHH
Q 041458 104 LLYDLCKANKMKKAIKVMEMMVSSGIIPDASS--YTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTV--TYNSLVRGLC 179 (568)
Q Consensus 104 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~ 179 (568)
.+...+..|+.+-... +.+.|..++... ....+...+..|+.+-+..+++ .|..++.. .-.+.+...+
T Consensus 17 ~L~~Aa~~g~~~~v~~----Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLPIVKN----LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHHTCHHHHHH----HHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHH----HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHH
Confidence 4555667788765544 445565554321 2234445566787765555544 34333221 1123444555
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCCh
Q 041458 180 MLGNLNQSLQFLDRLIQKGLVPNAFT--YSFLLEAAYKERGVHAAMKLLDDIIAKGGKPN---LVSYNVLLTGLCKEGRT 254 (568)
Q Consensus 180 ~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~ 254 (568)
..|+.+-+.- +.+.|..++... -.+.+...+..|+.+.+..+++ .+..++ ...+ +.+...+..|+.
T Consensus 89 ~~g~~~~v~~----Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~-t~L~~A~~~g~~ 159 (437)
T 1n11_A 89 RIGHTNMVKL----LLENNANPNLATTAGHTPLHIAAREGHVETVLALLE----KEASQACMTKKGF-TPLHVAAKYGKV 159 (437)
T ss_dssp HHTCHHHHHH----HHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSC-CHHHHHHHTTCH
T ss_pred HCCCHHHHHH----HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCC-CHHHHHHHcCCH
Confidence 6677654444 444454443221 1234455667788776655554 333222 2222 234455677887
Q ss_pred HHHHHHHHHhhhCCCCCCh---hHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCcCH---hhHHHHHHHHHhcCChHHHH
Q 041458 255 EEAIRFFRDLPSKGFEPNV---VSYNILLRSLCMEGRWEEANELLAEMDGGDRSPTI---VTYNILIGSLAYHGKTDHAL 328 (568)
Q Consensus 255 ~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~ 328 (568)
+-+..+++ .|..++. ...+ .+...+..|+.+-+..+ .+.+..++. .-++ .+...+..|+.+-+.
T Consensus 160 ~~v~~Ll~----~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~ 229 (437)
T 1n11_A 160 RVAELLLE----RDAHPNAAGKNGLT-PLHVAVHHNNLDIVKLL----LPRGGSPHSPAWNGYT-PLHIAAKQNQVEVAR 229 (437)
T ss_dssp HHHHHHHH----TTCCTTCCCSSCCC-HHHHHHHTTCHHHHHHH----GGGTCCSCCCCTTCCC-HHHHHHHTTCHHHHH
T ss_pred HHHHHHHh----CCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHH----HhCCCCCCCcCCCCCC-HHHHHHHcCCHHHHH
Confidence 76655554 3433332 1222 33444566776544433 333333322 1222 344455677766554
Q ss_pred HHHHHHHHCCCCCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh---hHHHHHHHHhCCCHHHHHHHHHH
Q 041458 329 KVLDEMVKGRFRPSA---ASYNPIIARLCSEGKVDLVVKCLDQMFHRRCKPNEG---TYNGLAMLCGVGKVQEAFAIIQS 402 (568)
Q Consensus 329 ~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~ 402 (568)
.+ .+.|..++. ...+ .+...+..|+.+-+ +.+.+.+..++.. -...+...+..|..+-+..+++.
T Consensus 230 ~L----l~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v----~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 300 (437)
T 1n11_A 230 SL----LQYGGSANAESVQGVT-PLHLAAQEGHAEMV----ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300 (437)
T ss_dssp HH----HHTTCCTTCCCTTCCC-HHHHHHHTTCHHHH----HHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HH----HHcCCCCCCCCCCCCC-HHHHHHHCCCHHHH----HHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 44 444433332 2222 33344566766544 3444555444332 22335566677777665555543
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041458 403 LGNKQNSSPQEFYKYVITSLCRKGKTYQAFQLLYEMTKYGFTPDSY---TYSSLIRGLCMEGLIEEALEIFVVMEEYDYK 479 (568)
Q Consensus 403 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (568)
-...+. .+..-.+.+ ...+..|+.+- .+.+.+.|..++.. -.+.|. ..+..|..+ +.+.+.+.|..
T Consensus 301 g~~~~~-~~~~g~t~L-~~A~~~g~~~~----v~~Ll~~gad~n~~~~~g~t~L~-~A~~~g~~~----iv~~Ll~~ga~ 369 (437)
T 1n11_A 301 GVMVDA-TTRMGYTPL-HVASHYGNIKL----VKFLLQHQADVNAKTKLGYSPLH-QAAQQGHTD----IVTLLLKNGAS 369 (437)
T ss_dssp TCCTTC-CCSSCCCHH-HHHHHSSCSHH----HHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCC
T ss_pred CccCCC-CCCCCCCHH-HHHHHcCcHHH----HHHHHhcCCCCCCCCCCCCCHHH-HHHHCChHH----HHHHHHHCcCC
Confidence 221111 122222333 33345676653 44445556555432 223333 334566654 44445566766
Q ss_pred CCh
Q 041458 480 PDV 482 (568)
Q Consensus 480 p~~ 482 (568)
|+.
T Consensus 370 ~~~ 372 (437)
T 1n11_A 370 PNE 372 (437)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 317
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=34.12 E-value=2.7e+02 Score=26.55 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 041458 135 SYTYLVNCLCKKGNVGYAMQLVEKMEDYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKG 198 (568)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 198 (568)
.|..-.+.+...|++++|.++--..++ |+-.+..|.+.+-..=..-|+..-.+.+|..+.+.|
T Consensus 363 L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 363 LFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 344445556666677666666544433 233455555444443333444455555555555554
No 318
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=33.88 E-value=1.9e+02 Score=23.50 Aligned_cols=165 Identities=13% Similarity=0.046 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 041458 81 DAFLQLERMVSKGHKPDVVQATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGNVGYAMQLVEKME 160 (568)
Q Consensus 81 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 160 (568)
++...+-..+. .++...-...+..+.+.+..+ +...+..+... +|..+-...+.++.+.++.+ +...+..+.
T Consensus 19 ~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l 90 (211)
T 3ltm_A 19 EKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKAL 90 (211)
T ss_dssp GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHT
T ss_pred hHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHH
Confidence 44444545444 356677777778888877743 44444445442 46666667777777777643 334444444
Q ss_pred hCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhh
Q 041458 161 DYGYPTNTVTYNSLVRGLCMLGNLNQSLQFLDRLIQKGLVPNAFTYSFLLEAAYKERGVHAAMKLLDDIIAKGGKPNLVS 240 (568)
Q Consensus 161 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 240 (568)
.. ++..+-...+.++.+.++.+ +...+..+.+ .++..+-...+.++.+.++.+ +...+..+.. .++..+
T Consensus 91 ~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~v 159 (211)
T 3ltm_A 91 KD---EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWV 159 (211)
T ss_dssp TC---SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHH
T ss_pred cC---CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHH
Confidence 32 56666677777777777644 3333444432 456666666666666666533 3333333332 234444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhh
Q 041458 241 YNVLLTGLCKEGRTEEAIRFFRDLP 265 (568)
Q Consensus 241 ~~~ll~~~~~~g~~~~A~~~~~~~~ 265 (568)
-...+.++.+.+. .++...+..+.
T Consensus 160 r~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 160 RQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 5555555555554 33344444433
No 319
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=33.73 E-value=1.4e+02 Score=23.93 Aligned_cols=26 Identities=19% Similarity=0.043 Sum_probs=11.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC
Q 041458 177 GLCMLGNLNQSLQFLDRLIQKGLVPN 202 (568)
Q Consensus 177 ~~~~~g~~~~a~~~~~~m~~~~~~~~ 202 (568)
..+..|+.+.-.++.+.+++.|..++
T Consensus 44 ~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 44 DVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 33344444444444555555554443
No 320
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=33.58 E-value=55 Score=25.07 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=22.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCC-CHHHHHHHHHhhhhcCC
Q 041458 524 VEGIAHQDELELSAEVLKELQLRQVV-SESAVERLVMQYDFEGI 566 (568)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 566 (568)
+..+...+..-.|.++++.+.+.++. +..++.+-+..+...|+
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 33444443444455555555555544 55555555555555553
No 321
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.89 E-value=1.9e+02 Score=22.82 Aligned_cols=50 Identities=6% Similarity=-0.091 Sum_probs=22.3
Q ss_pred CChHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H---H--HhcCChhHHHHHHHHHHH
Q 041458 496 RRTDLSLEVFQMMIEKGQMP--NETTYTILVE-G---I--AHQDELELSAEVLKELQL 545 (568)
Q Consensus 496 g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~-~---~--~~~g~~~~a~~~~~~~~~ 545 (568)
|++=+|-++++..-...-.+ +...|..||. . + .+.|+...|..++++...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555555555554432223 3334444444 1 1 123555555555555443
No 322
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=31.57 E-value=1.4e+02 Score=21.14 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=12.1
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 041458 431 AFQLLYEMTKYGFTPDSYTYSSLIRGLC 458 (568)
Q Consensus 431 A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 458 (568)
|.++.++....|+.|+..+...++..|.
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~ 55 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCV 55 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 323
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.76 E-value=1.2e+02 Score=25.53 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 041458 465 EALEIFVVMEEYDYKP-DVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMP 515 (568)
Q Consensus 465 ~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 515 (568)
++.++|..|...|+.- -...|......+-..|++++|.++|+..++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555555444332 23334445555555555555555555555554444
No 324
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=29.45 E-value=2e+02 Score=22.39 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=21.0
Q ss_pred HHHHHHHhccCCCCcC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 041458 292 ANELLAEMDGGDRSPT-IVTYNILIGSLAYHGKTDHALKVLDEMVKGR 338 (568)
Q Consensus 292 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (568)
+.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4444544444443222 2333444444444555555555555444443
No 325
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=29.35 E-value=3.1e+02 Score=24.69 Aligned_cols=46 Identities=11% Similarity=0.037 Sum_probs=21.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHccCChHHHHHHHHH
Q 041458 457 LCMEGLIEEALEIFVVMEEYDYKPDVD---NFNALLLGLCKSRRTDLSLEVFQM 507 (568)
Q Consensus 457 ~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~ 507 (568)
.+..|..+- .+.+.+.|..++.. -.+.| ...+..|+.+-+.-+++.
T Consensus 218 A~~~g~~~~----v~~Ll~~gad~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 218 AILINWEDV----AMRFVEMGIDVNMEDNEHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTTTCHHH----HHHHHTTTCCTTCCCTTSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred HHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHH-HHHHHhChHHHHHHHHHc
Confidence 345566543 33334455444322 22233 333455666665555554
No 326
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.46 E-value=4.2e+02 Score=25.73 Aligned_cols=64 Identities=11% Similarity=0.054 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCh--hhH-HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041458 413 EFYKYVITSLCRKGKTYQAFQLLYEMTKYGF-TPDS--YTY-SSLIRGLCMEGLIEEALEIFVVMEEY 476 (568)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~--~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~ 476 (568)
..+|.+++.|...+.++.|..+..+..--.. .+|. .+| -.+...+.-.+++.+|.+.+......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5678888888888888888888887641000 0111 122 22345556678888888888777643
No 327
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=27.82 E-value=77 Score=19.02 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=9.4
Q ss_pred ChHHHHHHHHHHHHCCCCC
Q 041458 497 RTDLSLEVFQMMIEKGQMP 515 (568)
Q Consensus 497 ~~~~a~~~~~~m~~~g~~p 515 (568)
++..|+++++.+.+.|--|
T Consensus 8 Dv~RaiELle~lq~sgevp 26 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVN 26 (53)
T ss_dssp HHHHHHHHHHHHGGGSSST
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 3445555555555544333
No 328
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=26.64 E-value=1.6e+02 Score=24.82 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=10.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCC
Q 041458 178 LCMLGNLNQSLQFLDRLIQKGL 199 (568)
Q Consensus 178 ~~~~g~~~~a~~~~~~m~~~~~ 199 (568)
.++.|+.+....+++.+.+.|.
T Consensus 9 A~~~g~~~~v~~ll~~l~~~g~ 30 (256)
T 2etb_A 9 VVSRGVPEELTGLLEYLRWNSK 30 (256)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHHcCC
Confidence 3344555444444444444443
No 329
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.58 E-value=2.3e+02 Score=22.05 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC--hhhHHHHHHHHHhCCC
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGN--VGYAMQLVEKMEDYGY 164 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~ 164 (568)
...++.-|...|+.++|.+.++++....+ ....+...+..++-+.++ .+...+++..+...|+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 45577788888888888888888752111 122233344444444322 3345566666665543
No 330
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.34 E-value=2e+02 Score=22.06 Aligned_cols=44 Identities=11% Similarity=-0.062 Sum_probs=20.2
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041458 489 LLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDE 532 (568)
Q Consensus 489 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 532 (568)
+..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 28 l~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 28 LEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 33333344444455555555544333344444444444444443
No 331
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=26.31 E-value=2.4e+02 Score=22.23 Aligned_cols=53 Identities=9% Similarity=0.049 Sum_probs=26.7
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCC--ChhhHHHHHH-H-----HHhcCChhHHHHHHHHHH
Q 041458 387 LCGVGKVQEAFAIIQSLGNKQNSS--PQEFYKYVIT-S-----LCRKGKTYQAFQLLYEMT 439 (568)
Q Consensus 387 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~~~ 439 (568)
+...|++-+|-++++.+=.....+ ....|..||. . ..+.|+...|..++.+..
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333456666666666555444333 3344444444 1 223566666666665554
No 332
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.85 E-value=2.1e+02 Score=21.52 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=14.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041458 497 RTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQD 531 (568)
Q Consensus 497 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 531 (568)
..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 33444455555444433334433333334343333
No 333
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.67 E-value=2.4e+02 Score=21.72 Aligned_cols=59 Identities=8% Similarity=0.060 Sum_probs=28.4
Q ss_pred HHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041458 473 MEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDE 532 (568)
Q Consensus 473 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 532 (568)
+.+.|++++ ..-..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 18 l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 344555532 23334444444444555566666666555444455554444555555544
No 334
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.56 E-value=2.9e+02 Score=22.63 Aligned_cols=55 Identities=5% Similarity=0.080 Sum_probs=28.0
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041458 490 LGLCKSRRTDLSLEVFQMMIEKGQMP---------NETTYTILVEGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~m~~~g~~p---------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (568)
...+..|+.+-+..+++.+.+.|..+ |..-.+. +......|+.+-+..+++.-..
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcCcc
Confidence 33455666666666666666655422 2222222 2233455666665555554433
No 335
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.32 E-value=68 Score=20.23 Aligned_cols=29 Identities=7% Similarity=0.214 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 041458 185 NQSLQFLDRLIQKGLVPNAFTYSFLLEAA 213 (568)
Q Consensus 185 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 213 (568)
++|.+.|.+|++..-.+...+|.-.++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45566666665443333445666666555
No 336
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=24.09 E-value=2.8e+02 Score=22.20 Aligned_cols=51 Identities=8% Similarity=0.018 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041458 428 TYQAFQLLYEMTKYGFTPDSYTYSSLIRGLCMEGLIEEALEIFVVMEEYDYK 479 (568)
Q Consensus 428 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (568)
.+....++..+.+.|+-.|..--...+....+.|.+ ....+-..+...|+.
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 344555666666666654444334444444433322 123344455556665
No 337
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=23.68 E-value=2.8e+02 Score=22.65 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=5.2
Q ss_pred HHcCCHHHHHHHH
Q 041458 214 YKERGVHAAMKLL 226 (568)
Q Consensus 214 ~~~~~~~~a~~~~ 226 (568)
++.|+.+.+..++
T Consensus 10 ~~~g~~~~v~~Ll 22 (228)
T 2dzn_A 10 CMENEFFKVQELL 22 (228)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhCCHHHHHHHH
Confidence 3344444333333
No 338
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.60 E-value=4.7e+02 Score=27.83 Aligned_cols=47 Identities=11% Similarity=-0.000 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CH----HHHHHHHHhhhhcC
Q 041458 519 TYTILVEGIAHQDELELSAEVLKELQLRQVV-SE----SAVERLVMQYDFEG 565 (568)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~g 565 (568)
-|..++..+.+++-++-+.++.+.+++.-.. ++ ....++.+..+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5667777778888888888888877764332 32 25556666666544
No 339
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.30 E-value=3.1e+02 Score=22.51 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=16.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 041458 460 EGLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSR 496 (568)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 496 (568)
..+.+.|+-++.+|.+.| .|....-..++-+.-.-|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 345555555555555555 444333333444443333
No 340
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.20 E-value=2.2e+02 Score=22.36 Aligned_cols=46 Identities=11% Similarity=0.005 Sum_probs=20.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 041458 487 ALLLGLCKSRRTDLSLEVFQMMIEK--GQMPNETTYTILVEGIAHQDE 532 (568)
Q Consensus 487 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~ 532 (568)
.++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3344444444444555555555543 333344443333444444443
No 341
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.98 E-value=5.9e+02 Score=27.09 Aligned_cols=29 Identities=10% Similarity=-0.063 Sum_probs=22.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 041458 345 SYNPIIARLCSEGKVDLVVKCLDQMFHRR 373 (568)
Q Consensus 345 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 373 (568)
-|..++..+-+.+.++.+.++-+.+++.-
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 46677888888888888888888777654
No 342
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=22.40 E-value=1.9e+02 Score=24.70 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=11.3
Q ss_pred HhcCChhhHHHHHHHHHhCC
Q 041458 144 CKKGNVGYAMQLVEKMEDYG 163 (568)
Q Consensus 144 ~~~g~~~~a~~~~~~~~~~~ 163 (568)
++.|+.+....+++...+.+
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHSC
T ss_pred HHcCCHHHHHHHHHHHhhcc
Confidence 45566666666665555444
No 343
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.20 E-value=86 Score=25.64 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=12.4
Q ss_pred HHHHHccCChHHHHHHHHHHHH
Q 041458 489 LLGLCKSRRTDLSLEVFQMMIE 510 (568)
Q Consensus 489 i~~~~~~g~~~~a~~~~~~m~~ 510 (568)
+..|.+.|.+++|.+++++...
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHccchHHHHHHHHHHhc
Confidence 3345666666666666666443
No 344
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.14 E-value=2.5e+02 Score=21.68 Aligned_cols=36 Identities=11% Similarity=0.117 Sum_probs=17.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041458 497 RTDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQDE 532 (568)
Q Consensus 497 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 532 (568)
..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 344455555555554433444444444444444443
No 345
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.62 E-value=3.3e+02 Score=22.21 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=10.8
Q ss_pred HHHHHcCCCHHHHHHHHHH
Q 041458 280 LRSLCMEGRWEEANELLAE 298 (568)
Q Consensus 280 ~~~~~~~g~~~~a~~~~~~ 298 (568)
+...+..|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3444556666666666654
No 346
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.35 E-value=1.8e+02 Score=21.54 Aligned_cols=17 Identities=6% Similarity=0.063 Sum_probs=7.9
Q ss_pred HhcCChHHHHHHHHHHH
Q 041458 179 CMLGNLNQSLQFLDRLI 195 (568)
Q Consensus 179 ~~~g~~~~a~~~~~~m~ 195 (568)
...++++.|.++...+.
T Consensus 72 l~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 72 LLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 33444555554444443
No 347
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.80 E-value=3.2e+02 Score=21.75 Aligned_cols=16 Identities=0% Similarity=-0.051 Sum_probs=7.6
Q ss_pred HHHHHHHHHHCCCCCC
Q 041458 327 ALKVLDEMVKGRFRPS 342 (568)
Q Consensus 327 a~~~~~~~~~~~~~~~ 342 (568)
..++.+.+++.|..++
T Consensus 93 ~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 93 TTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHCCCCCC
Confidence 3444555555554443
No 348
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.78 E-value=3.5e+02 Score=22.15 Aligned_cols=93 Identities=11% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC-----hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041458 453 LIRGLCME---GLIEEALEIFVVMEEYDYKPDVDNFNALLLGLCKSRR-----TDLSLEVFQMMIEKGQMPNETTYTILV 524 (568)
Q Consensus 453 l~~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~g~~p~~~~~~~ll 524 (568)
+|+++.++ .+.+.|+-++.+|.+.|-.|....-..++-+.-.-|. ...|...++.....|.+--...+...+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 89 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAI 89 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 041458 525 EGIAHQDELELSAEVLKELQL 545 (568)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~ 545 (568)
--++.+-+-..+...++...+
T Consensus 90 iyLA~aPKSNs~y~A~~~A~~ 110 (201)
T 3bge_A 90 IYLSVAPKSNAVYTAFNTAKQ 110 (201)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 349
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.51 E-value=2.1e+02 Score=21.97 Aligned_cols=34 Identities=9% Similarity=-0.041 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041458 498 TDLSLEVFQMMIEKGQMPNETTYTILVEGIAHQD 531 (568)
Q Consensus 498 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 531 (568)
.-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3445555555544433334444333344444443
No 350
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=20.32 E-value=1.2e+02 Score=19.60 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCK 145 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 145 (568)
++.++..++...-.++++..++++.++|. .+..+|.--++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 45566666666666777777777776663 355555555555544
No 351
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.17 E-value=2.2e+02 Score=20.14 Aligned_cols=55 Identities=5% Similarity=-0.028 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH-----HCCCCCCHHHHHH
Q 041458 466 ALEIFVVMEEYDYKPDVDNFNALLLGLCKSRRTDLSLEVFQMMI-----EKGQMPNETTYTI 522 (568)
Q Consensus 466 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~~~~ 522 (568)
|.++.++....|+.|+..+...++..|...+- + +.++.++.. ..|..|+..+++.
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~ 87 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNS 87 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 45555666666676666666666666655553 2 444433332 2345555554443
No 352
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=20.07 E-value=2.8e+02 Score=20.73 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC--hhhHHHHHHHHHhCCC
Q 041458 101 ATNLLYDLCKANKMKKAIKVMEMMVSSGIIPDASSYTYLVNCLCKKGN--VGYAMQLVEKMEDYGY 164 (568)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~ 164 (568)
...++.-|...|+.++|.+.++++....+ ....+...+..++-+.+. .+...+++..+.+.|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 35577778888888888888888752111 112233344444444321 3445566666665543
Done!