BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041459
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3IIC0|PRMA_PSEHT Ribosomal protein L11 methyltransferase OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=prmA PE=3 SV=1
Length = 293
Score = 164 bits (414), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 128/219 (58%), Gaps = 27/219 (12%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ K LWI P W PD A N++L+PGLAFGTG HATT LCL L+S G+
Sbjct: 101 DNFHPIQFGKRLWICPSWRDIPDPDAVNVLLDPGLAFGTGTHATTALCLKWLESQDLTGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGILGIAAIK GA +G+DIDPQA++++ NA N + K++++L
Sbjct: 161 TVVDFGCGSGILGIAAIKLGAERMIGIDIDPQALEASLDNANRNGVA-DKLEVYL----- 214
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
P + E D+V+ANIL PL +L I+ KPG +
Sbjct: 215 -PENQPEF--------------------SADIVVANILAQPLRELHSVILGLLKPGGKIA 253
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SGIL+EQ + + Y+ F+E ++ DWT VSGTKK
Sbjct: 254 MSGILTEQAQSVADVYAPFIELDDIAIEGDWTRVSGTKK 292
>sp|Q478R6|PRMA_DECAR Ribosomal protein L11 methyltransferase OS=Dechloromonas aromatica
(strain RCB) GN=prmA PE=3 SV=1
Length = 296
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 119/216 (55%), Gaps = 29/216 (13%)
Query: 3 FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELF 62
F P+ V++ LWIVP W PD A N+IL+PG+AFGTG H TT+LCL L+ +
Sbjct: 109 FDPIRVSERLWIVPSWHETPDPAAVNLILDPGMAFGTGSHPTTRLCLEWLERNVSEACTV 168
Query: 63 LDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122
LDYG GSGIL IAA + GA GVDIDPQA+++A NA N + L D P
Sbjct: 169 LDYGCGSGILAIAAARLGAGHVAGVDIDPQAVEAARANAERNGV------TALFADSATP 222
Query: 123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182
+ +YDVV+ANIL NPL LA I ++ +PG + +S
Sbjct: 223 VA-----------------------GEYDVVVANILSNPLRVLAPAICAHVRPGGKLALS 259
Query: 183 GILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTK 218
GIL EQ+ II Y++++ + +DW C++G K
Sbjct: 260 GILREQIDEIIAIYAQWIPLQVADVREDWVCLAGIK 295
>sp|A4SJL7|PRMA_AERS4 Ribosomal protein L11 methyltransferase OS=Aeromonas salmonicida
(strain A449) GN=prmA PE=3 SV=1
Length = 292
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 126/218 (57%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
+ FHP++ + LWI P W P+ A N++L+PGLAFGTG H TT LCL L L G+
Sbjct: 99 DHFHPMQFGERLWICPSWRDVPNPDAVNVMLDPGLAFGTGTHPTTALCLQWLDGLDLAGK 158
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGILGIAA+K GAA +G+DIDPQAI+++H NA N + +++L+L
Sbjct: 159 TVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASHDNAERNGVA-GQIELYL----- 212
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA + V+ DVV+ANIL PL +LA I + KPG+++
Sbjct: 213 -PADQPQDVEA-------------------DVVVANILAGPLRELAPLIAGHGKPGSLMA 252
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTK 218
+SG+L Q P + Y ++ + + ++W +SG K
Sbjct: 253 LSGVLESQAPELETIYGQWFDMDPTAVKEEWCRLSGRK 290
>sp|B6ENA3|PRMA_ALISL Ribosomal protein L11 methyltransferase OS=Aliivibrio salmonicida
(strain LFI1238) GN=prmA PE=3 SV=1
Length = 294
Score = 159 bits (401), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 128/219 (58%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ + LWI P W P+ A N++L+PGLAFGTG HATT LCL L+S+ G+
Sbjct: 102 DNFHPMKFGERLWICPSWREIPEPDAINVMLDPGLAFGTGTHATTALCLEWLESIDLTGK 161
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAAIK GAA VG+DIDPQAI ++ NA N + +++ L L D+
Sbjct: 162 TVIDFGCGSGILAIAAIKLGAAKVVGIDIDPQAITASKDNATRNGVA-EQLTLFLPQDQP 220
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
E+L + DVV+ANIL PL +L+ I ++ KPG +
Sbjct: 221 -------------ENLVA------------DVVVANILAAPLRELSSIITAHVKPGGALA 255
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SG+L Q ++ + YS+ ++E +W +SG KK
Sbjct: 256 MSGVLDTQANNVASYYSDNFTLDAIAEQQEWCRISGIKK 294
>sp|B0BRD1|PRMA_ACTPJ Ribosomal protein L11 methyltransferase OS=Actinobacillus
pleuropneumoniae serotype 3 (strain JL03) GN=prmA PE=3
SV=1
Length = 293
Score = 159 bits (401), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 125/219 (57%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ K LWI P W PD A N++L+PGLAFGTG H TT LCL L SL G+
Sbjct: 101 DNFHPMQFGKRLWICPSWREVPDSNAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLTGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAA+K GA ++G+DIDPQAI ++ NA N + +++L L D+
Sbjct: 161 TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGNNAEANGVA-DRLQLFLAKDQP 219
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
+DL + DVV+ANIL PL +LA +I++ KP +G
Sbjct: 220 -------------QDLQA------------DVVVANILAGPLKELAPNIITLVKPQGDLG 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SGIL+ Q + Y+ + E ++W ++G KK
Sbjct: 255 LSGILATQAESVCEAYAPDFNLDSVVEKEEWCRITGVKK 293
>sp|A3N2I5|PRMA_ACTP2 Ribosomal protein L11 methyltransferase OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=prmA PE=3
SV=1
Length = 293
Score = 158 bits (399), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 125/219 (57%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ K LWI P W PD A N++L+PGLAFGTG H TT LCL L SL G+
Sbjct: 101 DNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLTGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAA+K GA ++G+DIDPQAI ++ NA N + +++L L D+
Sbjct: 161 TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGNNAEANGVA-DRLQLFLAKDQP 219
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
+DL + DVV+ANIL PL +LA +I++ KP +G
Sbjct: 220 -------------QDLQA------------DVVVANILAGPLKELAPNIITLVKPQGDLG 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SGIL+ Q + Y+ + E ++W ++G KK
Sbjct: 255 LSGILATQAESVCEAYAPDFNLDPVVEKEEWCRITGVKK 293
>sp|Q7VPN5|PRMA_HAEDU Ribosomal protein L11 methyltransferase OS=Haemophilus ducreyi
(strain 35000HP / ATCC 700724) GN=prmA PE=3 SV=1
Length = 293
Score = 158 bits (399), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 127/219 (57%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ + LWI P W PD +A NI+L+PGLAFGTG H TT LCL L L G+
Sbjct: 101 DNFHPMQFGQRLWICPSWREVPDEKAVNIMLDPGLAFGTGTHPTTALCLQWLDGLDLTGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL I+A+K GA ++G+DIDPQAI ++ NAA N + +++L L D+
Sbjct: 161 TVIDFGCGSGILAISALKLGAKQAIGIDIDPQAILASQNNAAANGVA-DRLQLFLAKDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
P ++ + DVV+ANIL PL +LA +I++ KP +G
Sbjct: 219 -PQAL-----------------------QADVVVANILAGPLKELAPNIMTLVKPQGYLG 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SGIL+ Q + Y+ + + E ++W ++G K+
Sbjct: 255 LSGILATQAQSVCQAYAAVFKLDPVVEKEEWCRITGIKQ 293
>sp|B3GYL9|PRMA_ACTP7 Ribosomal protein L11 methyltransferase OS=Actinobacillus
pleuropneumoniae serotype 7 (strain AP76) GN=prmA PE=3
SV=1
Length = 293
Score = 157 bits (398), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 125/219 (57%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ K LWI P W PD A N++L+PGLAFGTG H TT LCL L SL G+
Sbjct: 101 DNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLTGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAA+K GA ++G+DIDPQAI ++ NA N + +++L L D+
Sbjct: 161 TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGNNAEANGVA-DRLQLFLAKDQP 219
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
+DL + DVV+ANIL PL +LA +I++ KP +G
Sbjct: 220 -------------QDLQA------------DVVVANILAGPLKELAPNIITLVKPQGDLG 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SGIL+ Q + Y+ + E ++W ++G KK
Sbjct: 255 LSGILATQAESVCEAYAPDFNLDPVVEKEEWCRITGVKK 293
>sp|Q21MK7|PRMA_SACD2 Ribosomal protein L11 methyltransferase OS=Saccharophagus degradans
(strain 2-40 / ATCC 43961 / DSM 17024) GN=prmA PE=3 SV=1
Length = 292
Score = 157 bits (396), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 123/220 (55%), Gaps = 28/220 (12%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCL-LLLQSLIKGG 59
+++HP++ WI P W +PPD A N++L+PGLAFGTG H TT +CL L Q +K
Sbjct: 100 KNYHPIQCGPHFWICPSWLSPPDPNAINLLLDPGLAFGTGTHPTTFMCLEWLAQQDVKNL 159
Query: 60 ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR 119
EL +DYG GSGILGIA + GA +VGVDIDPQA+ + +NA N +
Sbjct: 160 EL-IDYGCGSGILGIAGLLMGANSAVGVDIDPQALLATQENAVRNGLA----------KE 208
Query: 120 TFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVV 179
FP M +R + E D+V+ANIL PL++LA +++ K G +
Sbjct: 209 AFPVFMPQR----------------APKEPVDMVLANILAGPLVELAPALIALVKSGGKI 252
Query: 180 GISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SG+L Q II+ Y +E + E D+W C++G KK
Sbjct: 253 CLSGVLGTQRTSIISAYEHAIEFTEVREKDEWICLAGIKK 292
>sp|Q6DAJ5|PRMA_ERWCT Ribosomal protein L11 methyltransferase OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=prmA PE=3 SV=1
Length = 295
Score = 156 bits (395), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 128/218 (58%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ K LWI P W PD A N++L+PGLAFGTG H TT LCL L L G+
Sbjct: 101 DNFHPMQFGKRLWICPSWREIPDPSAVNVMLDPGLAFGTGTHPTTSLCLQWLDGLDLEGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAA+K GAA ++G+DIDPQAI+++ NA N + ++++L+L D+
Sbjct: 161 TIIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLPKDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA DLS+ DVV+ANIL PL +LA I K G +G
Sbjct: 219 -PA-----------DLSA------------DVVVANILAGPLRELAPLISDLPKAGGHLG 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTK 218
+SG+LS Q + Y++ ++E ++W ++G +
Sbjct: 255 LSGVLSTQADGVAEAYADKFTLDPVAEREEWCRITGQR 292
>sp|C6DIJ9|PRMA_PECCP Ribosomal protein L11 methyltransferase OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=prmA PE=3
SV=1
Length = 295
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 129/219 (58%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ K LWI P W PD A N++L+PGLAFGTG H TT LCL L L G+
Sbjct: 101 DNFHPMQFGKRLWICPSWRDIPDPTAVNVMLDPGLAFGTGTHPTTALCLQWLDGLDLEGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAA+K GAA ++G+DIDPQAI+++ NA N + ++++L+L D+
Sbjct: 161 TIIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLPKDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA DLS+ DVV+ANIL PL +LA I K G +G
Sbjct: 219 -PA-----------DLSA------------DVVVANILAGPLRELAPLISDLPKAGGHLG 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SG+L+ Q + Y++ ++E ++W ++G ++
Sbjct: 255 LSGVLATQADGVAEAYADKFTLDPVAEREEWCRITGQRR 293
>sp|B8F6T6|PRMA_HAEPS Ribosomal protein L11 methyltransferase OS=Haemophilus parasuis
serovar 5 (strain SH0165) GN=prmA PE=3 SV=1
Length = 294
Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 123/219 (56%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ K LWI P W PD A N++L+PGLAFGTG H TT LCL L SL +
Sbjct: 101 DNFHPMQFGKRLWICPSWREIPDPNAVNVMLDPGLAFGTGTHPTTALCLTWLDSLDLTDK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAA+K GA ++G+DIDPQAI ++ NA +N + +++L L D+
Sbjct: 161 TVIDFGCGSGILAIAALKLGAKKAIGIDIDPQAILASQNNAEVNGVA-DRLQLFLTKDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
P ++ DVVIANIL PL +LA I++ KP +G
Sbjct: 219 -PQNL-----------------------IADVVIANILAGPLKELAPQIITLVKPQGNLG 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SGIL+ Q + Y + + E ++W ++G KK
Sbjct: 255 LSGILATQAESVCKAYQNSFKLDSIIEKEEWCRITGIKK 293
>sp|Q81ZZ9|PRMA_NITEU Ribosomal protein L11 methyltransferase OS=Nitrosomonas europaea
(strain ATCC 19718 / NBRC 14298) GN=prmA PE=3 SV=1
Length = 313
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 121/218 (55%), Gaps = 17/218 (7%)
Query: 2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGEL 61
F P+ ++ LW+VP W PPD A ++ L+PGLAFGTG H TT+LCL L ++ G+
Sbjct: 108 QFEPIRISSRLWVVPSWHEPPDPAAISLRLDPGLAFGTGSHPTTRLCLTWLDQFLQPGDS 167
Query: 62 FLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 121
LDYG GSGIL IAA+KFGA G+DIDP AI ++ NA N P ++ V
Sbjct: 168 VLDYGCGSGILAIAALKFGADRVTGMDIDPNAITASLDNARNNFCDPDRLLFTTV----- 222
Query: 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181
+ +VED R +E +V+ANIL NPL+ LA ++ +PG + +
Sbjct: 223 -------LPPLVED-----DRASAEWAPVTIVVANILANPLIMLAPVLMKALQPGGRIVL 270
Query: 182 SGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
SGIL Q ++ YSE+ + + ++ W ++G K
Sbjct: 271 SGILETQADEVLQVYSEWFDMHIAAKEQGWVLLAGQKS 308
>sp|A5F3S3|PRMA_VIBC3 Ribosomal protein L11 methyltransferase OS=Vibrio cholerae serotype
O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=prmA PE=3
SV=1
Length = 295
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 125/218 (57%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ + LWI P W PD QA N++L+PGLAFGTG H TT LCL L +L G+
Sbjct: 102 DNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLEWLDNLDLTGK 161
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAAIK GAA +G+DIDPQA+ ++ NAA N + +++++L D+
Sbjct: 162 TVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGV-EDQIEVYLPKDQP 220
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
+G+V DVV+ANIL PL +L+ I KPG +
Sbjct: 221 ---------EGLV----------------ADVVVANILAGPLRELSPTIKGLLKPGGQLA 255
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTK 218
+SGIL Q + Y + LE ++E +W +SG K
Sbjct: 256 MSGILDTQAESVAEFYRDDLELDPIAEKSEWCRISGRK 293
>sp|Q9CLW2|PRMA_PASMU Ribosomal protein L11 methyltransferase OS=Pasteurella multocida
(strain Pm70) GN=prmA PE=3 SV=1
Length = 293
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 121/216 (56%), Gaps = 26/216 (12%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ K LWI P W PD ATN++L+PGLAFGTG H TT LCL L SL +
Sbjct: 101 DNFHPMRFGKRLWICPSWREVPDENATNVMLDPGLAFGTGTHPTTALCLEWLDSLDLQDK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAA+K GA +VG+DIDPQAI ++ NA N + +++L L D+
Sbjct: 161 TVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILASRNNAEQNGVA-DRLQLFLSEDK- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA + K DVV+ANIL PL +L I KP V+G
Sbjct: 219 -PADL-----------------------KADVVVANILAGPLKELYPVIRQLVKPNGVLG 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSG 216
+SGIL+ Q + + Y++ + E ++W ++G
Sbjct: 255 LSGILATQASSVCDAYAQSFVLEPVEEREEWCRITG 290
>sp|Q9KV64|PRMA_VIBCH Ribosomal protein L11 methyltransferase OS=Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=prmA
PE=3 SV=1
Length = 295
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 125/218 (57%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ + LWI P W PD QA N++L+PGLAFGTG H TT LCL L +L G+
Sbjct: 102 DNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLEWLDNLDLSGK 161
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAAIK GAA +G+DIDPQA+ ++ NAA N + +++++L D+
Sbjct: 162 TVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGV-EDQIEVYLPKDQP 220
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
+G+V DVV+ANIL PL +L+ I KPG +
Sbjct: 221 ---------EGLV----------------ADVVVANILAGPLRELSPIIKGLLKPGGQLA 255
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTK 218
+SGIL Q + Y + LE ++E +W +SG K
Sbjct: 256 MSGILDTQAESVAEFYRDDLELDPIAEKSEWCRISGRK 293
>sp|A0KNJ1|PRMA_AERHH Ribosomal protein L11 methyltransferase OS=Aeromonas hydrophila
subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=prmA
PE=3 SV=1
Length = 292
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 124/218 (56%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
+ FHP++ + LWI P W P+ A N++L+PGLAFGTG H TT LCL L L G+
Sbjct: 99 DHFHPMQFGERLWICPSWRDVPNPDAVNVMLDPGLAFGTGTHPTTALCLQWLDGLDLAGK 158
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGILGIAA+K GAA +G+DIDPQAI+++ NA N + +++L+L
Sbjct: 159 TVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASRDNAERNGVA-DQIELYL----- 212
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA + V+ DVV+ANIL PL +LA I + K G+++
Sbjct: 213 -PADQPQDVEA-------------------DVVVANILAGPLRELAPLIAGHGKAGSLMA 252
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTK 218
+SG+L Q P + Y ++ E + ++W +SG K
Sbjct: 253 LSGVLESQAPELETIYGQWFEMDPTAVKEEWCRLSGRK 290
>sp|A1RFA3|PRMA_SHESW Ribosomal protein L11 methyltransferase OS=Shewanella sp. (strain
W3-18-1) GN=prmA PE=3 SV=1
Length = 293
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 121/219 (55%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ LWI P W PD A N+IL+PGLAFGTG H TT LCL L SL E
Sbjct: 101 DNFHPIQFGSRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNE 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL +AA+K GA G+DID QAI ++ NA NN+ K+ L+L D+
Sbjct: 161 EVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIDASRANAERNNVA-DKLALYLPEDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA + K DV++ANIL PL +LA I K G +
Sbjct: 219 -PADL-----------------------KADVLVANILAGPLRELAPLIAERVKSGGKLA 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SG+L EQ I + YS++ + + +DW+ ++G +K
Sbjct: 255 LSGLLKEQAQEISDFYSQWFDMDEAAHKEDWSRLTGKRK 293
>sp|A4YB19|PRMA_SHEPC Ribosomal protein L11 methyltransferase OS=Shewanella putrefaciens
(strain CN-32 / ATCC BAA-453) GN=prmA PE=3 SV=1
Length = 293
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 121/219 (55%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ LWI P W PD A N+IL+PGLAFGTG H TT LCL L SL E
Sbjct: 101 DNFHPIQFGSRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNE 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL +AA+K GA G+DID QAI ++ NA NN+ K+ L+L D+
Sbjct: 161 EVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIDASRANAERNNVA-DKLALYLPEDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA + K DV++ANIL PL +LA I K G +
Sbjct: 219 -PADL-----------------------KADVLVANILAGPLRELAPLIAERVKSGGKLA 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SG+L EQ I + YS++ + + +DW+ ++G +K
Sbjct: 255 LSGLLKEQAQEISDFYSQWFDMDEAAHKEDWSRLTGKRK 293
>sp|Q8EJR7|PRMA_SHEON Ribosomal protein L11 methyltransferase OS=Shewanella oneidensis
(strain MR-1) GN=prmA PE=3 SV=1
Length = 293
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 124/219 (56%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
+++HP++ K LWI P W PD A N+IL+PGLAFGTG H TT LCL L SL E
Sbjct: 101 DNYHPIQFGKRLWICPSWREVPDPTAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNE 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL +AA+K GA G+DID QAI ++ NA N++ +++L+L D+
Sbjct: 161 EVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIDASKANAERNDVA-DQLELYLPEDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA + K DV++ANIL PL +LA I K G +
Sbjct: 219 -PADL-----------------------KADVLVANILAGPLRELAPLIAERVKTGGKLA 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SG+L EQ I + YS++ + + +DW+ ++GT+K
Sbjct: 255 LSGLLKEQAQEISDFYSQWFDMDEAAHKEDWSRLTGTRK 293
>sp|C3LQP9|PRMA_VIBCM Ribosomal protein L11 methyltransferase OS=Vibrio cholerae serotype
O1 (strain M66-2) GN=prmA PE=3 SV=1
Length = 295
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 125/218 (57%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ + LWI P W PD QA N++L+PGLAFGTG H TT LCL L +L G+
Sbjct: 102 DNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLEWLDNLDLTGK 161
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAAIK GAA +G+DIDPQA+ ++ NAA N + +++++L D+
Sbjct: 162 TVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGV-EDQIEVYLPKDQP 220
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
+G+V DVV+ANIL PL +L+ I KPG +
Sbjct: 221 ---------EGLV----------------ADVVVANILAGPLRELSPIIKGLLKPGGQLA 255
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTK 218
+SGIL Q + Y + LE ++E +W +SG K
Sbjct: 256 MSGILDTQAESVAEFYRDDLELDPIAEKSEWCRISGRK 293
>sp|Q2SZE1|PRMA_BURTA Ribosomal protein L11 methyltransferase OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=prmA PE=3 SV=1
Length = 300
Score = 154 bits (389), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 123/220 (55%), Gaps = 29/220 (13%)
Query: 2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGEL 61
F P+ + + +W+VP W P+ A + L+PGLAFGTG H TT+LC+ L+ ++ G+
Sbjct: 109 QFDPIHIGEKIWVVPSWHDAPEPDALVLELDPGLAFGTGSHPTTRLCMEWLEQTVQPGQT 168
Query: 62 FLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 121
LDYG GSGIL I A K GA G+DIDPQA+++A QN+ N D T+
Sbjct: 169 VLDYGCGSGILAILAKKCGAGNVTGIDIDPQAVEAARQNSERNRA-----------DVTY 217
Query: 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181
G+ +D + E +D+V+ANIL NPL +A + S KPG + +
Sbjct: 218 ---------GLPDDCPAGE---------FDIVVANILSNPLKLMASMLTSKVKPGGRIAL 259
Query: 182 SGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKRA 221
SG+L+ Q + + Y+ +++ + E + W C++GT++ +
Sbjct: 260 SGVLARQADEVASVYARYVDIAVWREHEGWVCLAGTRRES 299
>sp|Q15ZR4|PRMA_PSEA6 Ribosomal protein L11 methyltransferase OS=Pseudoalteromonas
atlantica (strain T6c / ATCC BAA-1087) GN=prmA PE=3 SV=1
Length = 292
Score = 154 bits (389), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 127/222 (57%), Gaps = 33/222 (14%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ + LWI P W PD A N++L+PGLAFGTG H TT LCL L +L +
Sbjct: 101 DNFHPMRFGQRLWICPSWRDVPDPSAVNVMLDPGLAFGTGTHPTTALCLRWLDALELSDK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
L +D+G GSGILGIAAIK GA VG+DIDPQA+ S+ NA N+IG K++L+L
Sbjct: 161 LVVDFGCGSGILGIAAIKLGAKRVVGIDIDPQALLSSQTNADRNHIG-DKIELYL----- 214
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
P E K DVV+ANIL PL L + I +Y K G +
Sbjct: 215 -PEHQPEL--------------------KADVVLANILAGPLRDLREVITAYCKSGGKLV 253
Query: 181 ISGILSEQLPHIINRYSE--FLEDILLSEMD-DWTCVSGTKK 219
+SGIL+EQ I + YS+ +E I E+D +W VSG +K
Sbjct: 254 LSGILAEQAQGINDLYSQDFHMEPI---EIDGEWARVSGKRK 292
>sp|C4LAF1|PRMA_TOLAT Ribosomal protein L11 methyltransferase OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=prmA PE=3 SV=1
Length = 292
Score = 154 bits (388), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 121/219 (55%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
E F P++ + LWI P W PD A N++L+PGLAFGTG H TT LCL L SL G+
Sbjct: 99 EHFQPMQFGERLWICPSWRDVPDPTAVNVLLDPGLAFGTGTHPTTALCLQWLDSLDLKGK 158
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAA+K GA +G+DIDPQAI+++ NA N + +++L+L D+
Sbjct: 159 TLVDFGCGSGILAIAALKLGAERVIGIDIDPQAIEASRDNAQRNGVS-DQLELYLPEDQ- 216
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
+ + D+V+ANIL PL +L+ I KP ++
Sbjct: 217 ------------------------PKNFQADIVVANILAGPLRELSGLISGLVKPHGLMA 252
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
ISGIL Q P ++ YS++ +E ++W + G KK
Sbjct: 253 ISGILESQAPELLEVYSQWFAMNPATEREEWCRLDGIKK 291
>sp|B5FC65|PRMA_VIBFM Ribosomal protein L11 methyltransferase OS=Vibrio fischeri (strain
MJ11) GN=prmA PE=3 SV=1
Length = 294
Score = 154 bits (388), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 124/219 (56%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ K LWI P W P+ A N++L+PGLAFGTG H TT LCL L+ L G+
Sbjct: 102 DNFHPMQFGKRLWICPSWREIPEPDAVNVMLDPGLAFGTGTHPTTSLCLEWLEGLDLEGK 161
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAAIK GAA +G+DIDPQAI ++ NA N + +++L+L D+
Sbjct: 162 TVVDFGCGSGILAIAAIKLGAAKVIGIDIDPQAILASKDNATRNGVA-DQIELYLPQDQP 220
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
+G++ DVV+ANIL PL +L+ I S KP +
Sbjct: 221 ---------EGLI----------------ADVVVANILAGPLRELSGIITSLVKPQGQLA 255
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SG+L Q + + Y+E + + E +W +SG KK
Sbjct: 256 MSGVLDTQAEDVASYYAEQFDLDAIVEQQEWCRISGKKK 294
>sp|Q5E263|PRMA_VIBF1 Ribosomal protein L11 methyltransferase OS=Vibrio fischeri (strain
ATCC 700601 / ES114) GN=prmA PE=3 SV=1
Length = 294
Score = 154 bits (388), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 124/219 (56%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ K LWI P W P+ A N++L+PGLAFGTG H TT LCL L+ L G+
Sbjct: 102 DNFHPMQFGKRLWICPSWREIPEPDAVNVMLDPGLAFGTGTHPTTSLCLEWLEGLDLEGK 161
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAAIK GAA +G+DIDPQAI ++ NA N + +++L+L D+
Sbjct: 162 TVVDFGCGSGILAIAAIKLGAAKVIGIDIDPQAILASKDNATRNGVA-DQIELYLPQDQP 220
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
+G++ DVV+ANIL PL +L+ I S KP +
Sbjct: 221 ---------EGLI----------------ADVVVANILAGPLRELSGIITSLVKPQGQLA 255
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SG+L Q + + Y+E + + E +W +SG KK
Sbjct: 256 MSGVLDTQAEDVASYYAEQFDLDAIVEQQEWCRISGKKK 294
>sp|A8GK75|PRMA_SERP5 Ribosomal protein L11 methyltransferase OS=Serratia proteamaculans
(strain 568) GN=prmA PE=3 SV=1
Length = 293
Score = 154 bits (388), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 124/219 (56%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ + LWI P W PD A N++L+PGLAFGTG H TT LCL L L G+
Sbjct: 101 DNFHPMRFGQRLWICPSWRDVPDPDAVNVMLDPGLAFGTGTHPTTALCLQWLDGLDLAGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAA+K GAA ++G+DIDPQAI+++ NA N + ++++L+L D+
Sbjct: 161 TIIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLPKDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA + DVV+ANIL PL +LA I K G +G
Sbjct: 219 -PADL-----------------------LADVVVANILAGPLRELAPLIGCLPKSGGHLG 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SG+L+ Q + Y + ++E ++W ++G +K
Sbjct: 255 LSGVLATQAASVAQAYEDKFTLDPVAEREEWCRITGQRK 293
>sp|B1JKF2|PRMA_YERPY Ribosomal protein L11 methyltransferase OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=prmA
PE=3 SV=1
Length = 293
Score = 154 bits (388), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 128/220 (58%), Gaps = 28/220 (12%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ + LWI P W PD A N++L+PGLAFGTG H TT LCL L SL G+
Sbjct: 101 DNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLNGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAA+K GAA ++G+DIDPQAI+++ NA N + ++++L+L D+
Sbjct: 161 TLIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLAKDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA ++ DVV+ANIL PL +LA I G +G
Sbjct: 219 -PAELSA-----------------------DVVVANILAGPLRELAPLISVLPTTGGHLG 254
Query: 181 ISGILSEQLPHIINRYSE-FLEDILLSEMDDWTCVSGTKK 219
+SG+L+ Q + Y + F+ D ++E ++W ++G KK
Sbjct: 255 LSGVLATQAAGVAQAYEDKFILDP-VAEKEEWCRITGIKK 293
>sp|Q8ZAX6|PRMA_YERPE Ribosomal protein L11 methyltransferase OS=Yersinia pestis GN=prmA
PE=3 SV=1
Length = 293
Score = 154 bits (388), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 128/220 (58%), Gaps = 28/220 (12%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ + LWI P W PD A N++L+PGLAFGTG H TT LCL L SL G+
Sbjct: 101 DNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLNGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAA+K GAA ++G+DIDPQAI+++ NA N + ++++L+L D+
Sbjct: 161 TLIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLAKDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA ++ DVV+ANIL PL +LA I G +G
Sbjct: 219 -PAELSA-----------------------DVVVANILAGPLRELAPLISVLPTTGGHLG 254
Query: 181 ISGILSEQLPHIINRYSE-FLEDILLSEMDDWTCVSGTKK 219
+SG+L+ Q + Y + F+ D ++E ++W ++G KK
Sbjct: 255 LSGVLATQAAGVAQAYEDKFILDP-VAEKEEWCRITGIKK 293
>sp|A7FDQ3|PRMA_YERP3 Ribosomal protein L11 methyltransferase OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=prmA PE=3 SV=1
Length = 293
Score = 154 bits (388), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 128/220 (58%), Gaps = 28/220 (12%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ + LWI P W PD A N++L+PGLAFGTG H TT LCL L SL G+
Sbjct: 101 DNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLNGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAA+K GAA ++G+DIDPQAI+++ NA N + ++++L+L D+
Sbjct: 161 TLIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLAKDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA ++ DVV+ANIL PL +LA I G +G
Sbjct: 219 -PAELSA-----------------------DVVVANILAGPLRELAPLISVLPTTGGHLG 254
Query: 181 ISGILSEQLPHIINRYSE-FLEDILLSEMDDWTCVSGTKK 219
+SG+L+ Q + Y + F+ D ++E ++W ++G KK
Sbjct: 255 LSGVLATQAAGVAQAYEDKFILDP-VAEKEEWCRITGIKK 293
>sp|Q0HQK1|PRMA_SHESR Ribosomal protein L11 methyltransferase OS=Shewanella sp. (strain
MR-7) GN=prmA PE=3 SV=1
Length = 293
Score = 153 bits (386), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 123/219 (56%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
+++HP++ K LWI P W PD A N+IL+PGLAFGTG H TT LCL L SL E
Sbjct: 101 DNYHPIQFGKRLWICPSWREVPDPSAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNE 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL +AA+K GA G+DID QAI+++ NA N++ ++ L+L D+
Sbjct: 161 EVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIEASKANAERNDVA-DQLALYLPEDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA + K DV++ANIL PL +LA I K G +
Sbjct: 219 -PADL-----------------------KADVLVANILAGPLRELAPLIAERVKSGGKLA 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SG+L EQ I + YS++ + + +DW+ ++G +K
Sbjct: 255 LSGLLKEQAQEISDFYSQWFDMDEAAHKEDWSRLTGKRK 293
>sp|Q0HN86|PRMA_SHESM Ribosomal protein L11 methyltransferase OS=Shewanella sp. (strain
MR-4) GN=prmA PE=3 SV=1
Length = 293
Score = 153 bits (386), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 123/219 (56%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
+++HP++ K LWI P W PD A N+IL+PGLAFGTG H TT LCL L SL E
Sbjct: 101 DNYHPIQFGKRLWICPSWREVPDPSAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNE 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL +AA+K GA G+DID QAI+++ NA N++ ++ L+L D+
Sbjct: 161 EVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIEASKANAERNDVA-DQLALYLPEDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA + K DV++ANIL PL +LA I K G +
Sbjct: 219 -PADL-----------------------KADVLVANILAGPLRELAPLIAERVKSGGKLA 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SG+L EQ I + YS++ + + +DW+ ++G +K
Sbjct: 255 LSGLLKEQAQEISDFYSQWFDMDEAAHKEDWSRLTGKRK 293
>sp|A0KS74|PRMA_SHESA Ribosomal protein L11 methyltransferase OS=Shewanella sp. (strain
ANA-3) GN=prmA PE=3 SV=1
Length = 293
Score = 153 bits (386), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 123/219 (56%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
+++HP++ K LWI P W PD A N+IL+PGLAFGTG H TT LCL L SL E
Sbjct: 101 DNYHPIQFGKRLWICPSWREVPDPSAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNE 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL +AA+K GA G+DID QAI+++ NA N++ ++ L+L D+
Sbjct: 161 EVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIEASKANAERNDVA-DQLALYLPEDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA + K DV++ANIL PL +LA I K G +
Sbjct: 219 -PADL-----------------------KADVLVANILAGPLRELAPLIAERVKSGGKLA 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SG+L EQ I + YS++ + + +DW+ ++G +K
Sbjct: 255 LSGLLKEQAQEISDFYSQWFDMDEAAHKEDWSRLTGKRK 293
>sp|Q665E3|PRMA_YERPS Ribosomal protein L11 methyltransferase OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=prmA
PE=3 SV=2
Length = 293
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 128/220 (58%), Gaps = 28/220 (12%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ + LWI P W PD A N++L+PGLAFGTG H TT LCL L SL G+
Sbjct: 101 DNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLNGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAA+K GAA ++G+DIDPQAI+++ NA N + ++++L+L D+
Sbjct: 161 TLIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLAKDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA ++ DVV+ANIL PL +LA I G +G
Sbjct: 219 -PAELSA-----------------------DVVVANILAGPLRELALLISVLPTTGGHLG 254
Query: 181 ISGILSEQLPHIINRYSE-FLEDILLSEMDDWTCVSGTKK 219
+SG+L+ Q + Y + F+ D ++E ++W ++G KK
Sbjct: 255 LSGVLATQAAGVAQAYEDKFILDP-VAEKEEWCRITGIKK 293
>sp|B2K467|PRMA_YERPB Ribosomal protein L11 methyltransferase OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=prmA
PE=3 SV=1
Length = 293
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 128/220 (58%), Gaps = 28/220 (12%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ + LWI P W PD A N++L+PGLAFGTG H TT LCL L SL G+
Sbjct: 101 DNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLNGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAA+K GAA ++G+DIDPQAI+++ NA N + ++++L+L D+
Sbjct: 161 TLIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLAKDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA ++ DVV+ANIL PL +LA I G +G
Sbjct: 219 -PAELSA-----------------------DVVVANILAGPLRELALLISVLPTTGGHLG 254
Query: 181 ISGILSEQLPHIINRYSE-FLEDILLSEMDDWTCVSGTKK 219
+SG+L+ Q + Y + F+ D ++E ++W ++G KK
Sbjct: 255 LSGVLATQAAGVAQAYEDKFILDP-VAEKEEWCRITGIKK 293
>sp|Q2NWP9|PRMA_SODGM Ribosomal protein L11 methyltransferase OS=Sodalis glossinidius
(strain morsitans) GN=prmA PE=3 SV=1
Length = 293
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 121/219 (55%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ + LWI P W PD QA N++L+PGLAFGTG H TT LCL L L G+
Sbjct: 101 DNFHPMRFGERLWICPSWRPVPDPQAVNVMLDPGLAFGTGTHPTTALCLQWLDGLDLRGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAA+K GAA +VG+DIDPQAI ++ NA N
Sbjct: 161 TVIDFGCGSGILAIAALKLGAAHAVGIDIDPQAILASRDNAQRN---------------- 204
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
G+ E L+ + + + +VV+ANIL PL +LA I+ PG +G
Sbjct: 205 ----------GVAELLTLYLPQQQPQDLHANVVVANILAGPLRELAPLIIDLPLPGGYLG 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SGIL+ Q + Y+ ++E ++W ++GT++
Sbjct: 255 LSGILASQAESVAQAYAAAFSLDPVAEKEEWCRITGTRR 293
>sp|A4JBD7|PRMA_BURVG Ribosomal protein L11 methyltransferase OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=prmA PE=3 SV=1
Length = 300
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 29/219 (13%)
Query: 3 FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELF 62
F P+ + + +W+VP W PD A + L+PGLAFGTG H TT+LC+ L+ +K G+
Sbjct: 110 FEPIPIGERIWVVPSWHDAPDPDALILELDPGLAFGTGSHPTTRLCMEWLEQTVKPGQSV 169
Query: 63 LDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122
LDYG GSGIL I A K GA +G+DIDPQA++SA QN+ N+ PD F
Sbjct: 170 LDYGCGSGILAILARKCGADPVIGIDIDPQAVESARQNSERNHADVTYGLPDACPDGEF- 228
Query: 123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182
D+V+ANIL NPL +A + S KPG + +S
Sbjct: 229 ----------------------------DIVVANILSNPLKLMASMLASKVKPGGRIALS 260
Query: 183 GILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKRA 221
G+L+ Q + Y+ +++ + E + W C++GT++ +
Sbjct: 261 GVLARQADEVAAVYARYVDISVWREHEGWVCLAGTRRES 299
>sp|B8E680|PRMA_SHEB2 Ribosomal protein L11 methyltransferase OS=Shewanella baltica
(strain OS223) GN=prmA PE=3 SV=1
Length = 293
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 121/219 (55%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ LWI P W PD A N+IL+PGLAFGTG H TT LCL L SL E
Sbjct: 101 DNFHPIQFGTRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSDE 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL +AA+K GA G+DID QAI ++ NA N++ K+ L+L D+
Sbjct: 161 EVIDFGCGSGILAVAALKLGAKNVTGIDIDYQAIDASRANAERNDVA-DKLALYLPEDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA + K DV++ANIL PL +LA I K G +
Sbjct: 219 -PADL-----------------------KADVLVANILAGPLRELAPLIAERVKTGGKLA 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SG+L EQ I + YS++ + + +DW+ ++G +K
Sbjct: 255 LSGLLKEQAQEISDFYSQWFDMDAAAHKEDWSRLTGKRK 293
>sp|A1JRL5|PRMA_YERE8 Ribosomal protein L11 methyltransferase OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=prmA PE=3
SV=1
Length = 293
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 126/219 (57%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ + LWI P W PD A N++L+PGLAFGTG H TT LCL L L G+
Sbjct: 101 DNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTTALCLQWLDGLNLAGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL IAA+K GAA ++G+DIDPQAI+++ NA N + ++++L+L D+
Sbjct: 161 TVIDFGCGSGILAIAALKLGAAHAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLAKDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA DLS+ DVV+ANIL PL +LA I G +G
Sbjct: 219 -PA-----------DLSA------------DVVVANILAGPLRELAPLISVLPVAGGHLG 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SG+L+ Q + Y + ++E ++W ++G KK
Sbjct: 255 LSGVLATQAAGVAQAYEDKFTLDPVAEKEEWCRITGIKK 293
>sp|A6WTE5|PRMA_SHEB8 Ribosomal protein L11 methyltransferase OS=Shewanella baltica
(strain OS185) GN=prmA PE=3 SV=1
Length = 293
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 122/219 (55%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ LWI P W PD A N+IL+PGLAFGTG H TT LCL L SL +
Sbjct: 101 DNFHPIQFGTRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL +AA+K GA G+DID QAI ++ NA N++ K+ L+L D+
Sbjct: 161 EVIDFGCGSGILAVAALKLGAKNVTGIDIDYQAIDASRANAERNDVA-DKLALYLPEDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA + K DV++ANIL PL +LA I K G +
Sbjct: 219 -PADL-----------------------KADVLVANILAGPLRELAPLIAERVKTGGKLA 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SG+L EQ I + YS++ + + + +DW+ ++G +K
Sbjct: 255 LSGLLKEQAQEISDFYSQWFDMDVAAHKEDWSRLTGKRK 293
>sp|Q39JS9|PRMA_BURS3 Ribosomal protein L11 methyltransferase OS=Burkholderia sp. (strain
383) GN=prmA PE=3 SV=1
Length = 300
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 29/219 (13%)
Query: 3 FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELF 62
F P+ + + +W+VP W PD A + L+PGLAFGTG H TT+LC+ L+ +K G+
Sbjct: 110 FEPIPIGERIWVVPSWHDAPDPDALILELDPGLAFGTGSHPTTRLCMEWLEQSVKPGQSV 169
Query: 63 LDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122
LDYG GSGIL I A K GA +G+DIDPQA++SA QN+ N+ PD F
Sbjct: 170 LDYGCGSGILAILAKKCGANPVIGIDIDPQAVESARQNSERNHADVTYGLPDACPDGEF- 228
Query: 123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182
D+V+ANIL NPL +A + S KPG + +S
Sbjct: 229 ----------------------------DIVVANILSNPLKLMASMLASKVKPGGRIALS 260
Query: 183 GILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKRA 221
G+L+ Q + Y+ +++ + E + W C++GT++ +
Sbjct: 261 GVLARQADEVAAVYARYVDISVWREHEGWVCLAGTRRES 299
>sp|Q3SMB4|PRMA_THIDA Ribosomal protein L11 methyltransferase OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=prmA PE=3 SV=1
Length = 296
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 119/217 (54%), Gaps = 29/217 (13%)
Query: 3 FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELF 62
F P+ ++ LWIVP W PD +A N+ L+PGLAFGTG H TT+LCL L + ++GGE
Sbjct: 109 FDPIPISARLWIVPTWHEAPDSRALNLKLDPGLAFGTGSHPTTRLCLRWLDANLRGGETL 168
Query: 63 LDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122
LDYG GSGIL IAA K GA GVDIDPQA+ ++ NAALN + D F
Sbjct: 169 LDYGCGSGILAIAAAKLGARRVEGVDIDPQAVSASRDNAALNEV-----------DAHF- 216
Query: 123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182
G+ +L++ E YDVV+ANIL NPL +A + + G + +S
Sbjct: 217 --------GLPGELAAGE---------YDVVVANILTNPLKAMAPLLAGRVRSGGSLVLS 259
Query: 183 GILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
GIL+EQ ++ Y + + + W + G K+
Sbjct: 260 GILAEQAEDVMAVYRPWFVFDAPASDEGWVRLVGVKR 296
>sp|A3D9J5|PRMA_SHEB5 Ribosomal protein L11 methyltransferase OS=Shewanella baltica
(strain OS155 / ATCC BAA-1091) GN=prmA PE=3 SV=1
Length = 293
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 120/219 (54%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ LWI P W PD A N+IL+PGLAFGTG H TT LCL L SL E
Sbjct: 101 DNFHPIQFGTRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNE 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
+D+G GSGIL +AA+K GA G+DID QAI ++ NA N++ K+ L+L D+
Sbjct: 161 EVIDFGCGSGILAVAALKLGAKNVTGIDIDYQAIDASRANAERNDVA-DKLALYLPEDQ- 218
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
PA + K DV++ANIL PL +LA I K G +
Sbjct: 219 -PADL-----------------------KADVLVANILAGPLRELAPLIAERVKTGGKLA 254
Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
+SG+L EQ I + YS++ + +DW+ ++G +K
Sbjct: 255 LSGLLKEQAQEISDFYSQWFDMDAAVHKEDWSRLTGKRK 293
>sp|Q63QN9|PRMA_BURPS Ribosomal protein L11 methyltransferase OS=Burkholderia
pseudomallei (strain K96243) GN=prmA PE=3 SV=1
Length = 300
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 120/220 (54%), Gaps = 29/220 (13%)
Query: 2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGEL 61
F P+ + + +W+VP W P A + L+PGLAFGTG H TT+LC+ L+ ++ G+
Sbjct: 109 QFEPIHIGEKIWVVPSWHDAPQPDALVLELDPGLAFGTGSHPTTRLCMEWLEQTVQPGQT 168
Query: 62 FLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 121
LDYG GSGIL I A K GA G+DIDPQA+++A N+ N D T+
Sbjct: 169 VLDYGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNRA-----------DVTY 217
Query: 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181
G+ +D E +D+V+ANIL NPL +A + S KPG + +
Sbjct: 218 ---------GLPDDCPDGE---------FDIVVANILSNPLKLMASMLASKVKPGGRIAL 259
Query: 182 SGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKRA 221
SG+L+ Q + + Y+ +++ + E + W C++GT++ +
Sbjct: 260 SGVLARQADEVASVYARYIDIAVWREHEGWVCLAGTRRES 299
>sp|A1V0M1|PRMA_BURMS Ribosomal protein L11 methyltransferase OS=Burkholderia mallei
(strain SAVP1) GN=prmA PE=3 SV=1
Length = 300
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 120/220 (54%), Gaps = 29/220 (13%)
Query: 2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGEL 61
F P+ + + +W+VP W P A + L+PGLAFGTG H TT+LC+ L+ ++ G+
Sbjct: 109 QFEPIHIGEKIWVVPSWHDAPQPDALVLELDPGLAFGTGSHPTTRLCMEWLEQTVQPGQT 168
Query: 62 FLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 121
LDYG GSGIL I A K GA G+DIDPQA+++A N+ N D T+
Sbjct: 169 VLDYGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNRA-----------DVTY 217
Query: 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181
G+ +D E +D+V+ANIL NPL +A + S KPG + +
Sbjct: 218 ---------GLPDDCPDGE---------FDIVVANILSNPLKLMASMLASKVKPGGRIAL 259
Query: 182 SGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKRA 221
SG+L+ Q + + Y+ +++ + E + W C++GT++ +
Sbjct: 260 SGVLARQADEVASVYARYIDIAVWREHEGWVCLAGTRRES 299
>sp|Q62GX2|PRMA_BURMA Ribosomal protein L11 methyltransferase OS=Burkholderia mallei
(strain ATCC 23344) GN=prmA PE=3 SV=1
Length = 300
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 120/220 (54%), Gaps = 29/220 (13%)
Query: 2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGEL 61
F P+ + + +W+VP W P A + L+PGLAFGTG H TT+LC+ L+ ++ G+
Sbjct: 109 QFEPIHIGEKIWVVPSWHDAPQPDALVLELDPGLAFGTGSHPTTRLCMEWLEQTVQPGQT 168
Query: 62 FLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 121
LDYG GSGIL I A K GA G+DIDPQA+++A N+ N D T+
Sbjct: 169 VLDYGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNRA-----------DVTY 217
Query: 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181
G+ +D E +D+V+ANIL NPL +A + S KPG + +
Sbjct: 218 ---------GLPDDCPDGE---------FDIVVANILSNPLKLMASMLASKVKPGGRIAL 259
Query: 182 SGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKRA 221
SG+L+ Q + + Y+ +++ + E + W C++GT++ +
Sbjct: 260 SGVLARQADEVASVYARYIDIAVWREHEGWVCLAGTRRES 299
>sp|A2S5P8|PRMA_BURM9 Ribosomal protein L11 methyltransferase OS=Burkholderia mallei
(strain NCTC 10229) GN=prmA PE=3 SV=1
Length = 300
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 120/220 (54%), Gaps = 29/220 (13%)
Query: 2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGEL 61
F P+ + + +W+VP W P A + L+PGLAFGTG H TT+LC+ L+ ++ G+
Sbjct: 109 QFEPIHIGEKIWVVPSWHDAPQPDALVLELDPGLAFGTGSHPTTRLCMEWLEQTVQPGQT 168
Query: 62 FLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 121
LDYG GSGIL I A K GA G+DIDPQA+++A N+ N D T+
Sbjct: 169 VLDYGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNRA-----------DVTY 217
Query: 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181
G+ +D E +D+V+ANIL NPL +A + S KPG + +
Sbjct: 218 ---------GLPDDCPDGE---------FDIVVANILSNPLKLMASMLASKVKPGGRIAL 259
Query: 182 SGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKRA 221
SG+L+ Q + + Y+ +++ + E + W C++GT++ +
Sbjct: 260 SGVLARQADEVASVYARYIDIAVWREHEGWVCLAGTRRES 299
>sp|A3MRB1|PRMA_BURM7 Ribosomal protein L11 methyltransferase OS=Burkholderia mallei
(strain NCTC 10247) GN=prmA PE=3 SV=1
Length = 300
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 120/220 (54%), Gaps = 29/220 (13%)
Query: 2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGEL 61
F P+ + + +W+VP W P A + L+PGLAFGTG H TT+LC+ L+ ++ G+
Sbjct: 109 QFEPIHIGEKIWVVPSWHDAPQPDALVLELDPGLAFGTGSHPTTRLCMEWLEQTVQPGQT 168
Query: 62 FLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 121
LDYG GSGIL I A K GA G+DIDPQA+++A N+ N D T+
Sbjct: 169 VLDYGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNRA-----------DVTY 217
Query: 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181
G+ +D E +D+V+ANIL NPL +A + S KPG + +
Sbjct: 218 ---------GLPDDCPDGE---------FDIVVANILSNPLKLMASMLASKVKPGGRIAL 259
Query: 182 SGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKRA 221
SG+L+ Q + + Y+ +++ + E + W C++GT++ +
Sbjct: 260 SGVLARQADEVASVYARYIDIAVWREHEGWVCLAGTRRES 299
>sp|A3NDQ7|PRMA_BURP6 Ribosomal protein L11 methyltransferase OS=Burkholderia
pseudomallei (strain 668) GN=prmA PE=3 SV=1
Length = 300
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 120/220 (54%), Gaps = 29/220 (13%)
Query: 2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGEL 61
F P+ + + +W+VP W P A + L+PGLAFGTG H TT+LC+ L+ ++ G+
Sbjct: 109 QFEPIHIGEKIWVVPSWHDAPQPDALVLELDPGLAFGTGSHPTTRLCMEWLEQTVQPGQT 168
Query: 62 FLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 121
LDYG GSGIL I A K GA G+DIDPQA+++A N+ N D T+
Sbjct: 169 VLDYGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNRA-----------DVTY 217
Query: 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181
G+ +D E +D+V+ANIL NPL +A + S KPG + +
Sbjct: 218 ---------GLPDDCPDGE---------FDIVVANILSNPLKLMASMLASKVKPGGRIAL 259
Query: 182 SGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKRA 221
SG+L+ Q + + Y+ +++ + E + W C++GT++ +
Sbjct: 260 SGVLARQADEVASVYARYIDIAVWREHEGWVCLAGTRRES 299
>sp|Q3JNI0|PRMA_BURP1 Ribosomal protein L11 methyltransferase OS=Burkholderia
pseudomallei (strain 1710b) GN=prmA PE=3 SV=1
Length = 300
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 120/220 (54%), Gaps = 29/220 (13%)
Query: 2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGEL 61
F P+ + + +W+VP W P A + L+PGLAFGTG H TT+LC+ L+ ++ G+
Sbjct: 109 QFEPIHIGEKIWVVPSWHDAPQPDALVLELDPGLAFGTGSHPTTRLCMEWLEQTVQPGQT 168
Query: 62 FLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 121
LDYG GSGIL I A K GA G+DIDPQA+++A N+ N D T+
Sbjct: 169 VLDYGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNRA-----------DVTY 217
Query: 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181
G+ +D E +D+V+ANIL NPL +A + S KPG + +
Sbjct: 218 ---------GLPDDCPDGE---------FDIVVANILSNPLKLMASMLASKVKPGGRIAL 259
Query: 182 SGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKRA 221
SG+L+ Q + + Y+ +++ + E + W C++GT++ +
Sbjct: 260 SGVLARQADEVASVYARYIDIAVWREHEGWVCLAGTRRES 299
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,841,221
Number of Sequences: 539616
Number of extensions: 3670185
Number of successful extensions: 12422
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 179
Number of HSP's that attempted gapping in prelim test: 11210
Number of HSP's gapped (non-prelim): 769
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)