Query 041459
Match_columns 225
No_of_seqs 140 out of 1448
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 07:19:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06325 PrmA: Ribosomal prote 100.0 2.7E-35 5.7E-40 251.4 17.3 192 1-219 103-295 (295)
2 COG2264 PrmA Ribosomal protein 100.0 6E-35 1.3E-39 247.4 18.8 195 1-219 104-300 (300)
3 TIGR00406 prmA ribosomal prote 100.0 4.5E-29 9.8E-34 213.9 20.2 187 1-212 101-288 (288)
4 PRK00517 prmA ribosomal protei 100.0 9E-29 1.9E-33 208.0 20.3 188 1-219 62-250 (250)
5 PF05175 MTS: Methyltransferas 99.7 1.2E-16 2.5E-21 127.0 15.9 148 27-204 2-158 (170)
6 COG2226 UbiE Methylase involve 99.7 4.9E-16 1.1E-20 128.8 14.9 118 58-199 51-172 (238)
7 PRK09489 rsmC 16S ribosomal RN 99.7 1.9E-15 4.2E-20 132.3 18.0 173 18-223 159-341 (342)
8 PF12847 Methyltransf_18: Meth 99.7 8E-16 1.7E-20 113.1 11.2 102 58-183 1-111 (112)
9 PF01209 Ubie_methyltran: ubiE 99.7 1.1E-15 2.4E-20 127.2 12.5 121 56-200 45-170 (233)
10 TIGR00537 hemK_rel_arch HemK-r 99.7 6.9E-15 1.5E-19 117.5 16.5 125 58-210 19-168 (179)
11 PRK15128 23S rRNA m(5)C1962 me 99.6 7E-15 1.5E-19 131.0 16.8 159 22-199 185-356 (396)
12 COG1092 Predicted SAM-dependen 99.6 1.3E-14 2.8E-19 128.2 17.2 157 23-198 183-352 (393)
13 COG4123 Predicted O-methyltran 99.6 4.2E-15 9E-20 123.5 12.5 120 58-199 44-185 (248)
14 PRK08287 cobalt-precorrin-6Y C 99.6 1.9E-14 4.1E-19 115.8 15.5 123 56-204 29-153 (187)
15 PRK14966 unknown domain/N5-glu 99.6 2.8E-14 6.1E-19 126.7 17.0 166 25-218 221-418 (423)
16 PRK15451 tRNA cmo(5)U34 methyl 99.6 1.3E-14 2.8E-19 121.8 14.2 115 46-185 44-166 (247)
17 PRK11805 N5-glutamine S-adenos 99.6 4.3E-14 9.4E-19 122.2 17.7 163 26-216 101-295 (307)
18 TIGR03533 L3_gln_methyl protei 99.6 7.6E-14 1.7E-18 119.5 18.6 144 26-198 89-264 (284)
19 COG2813 RsmC 16S RNA G1207 met 99.6 3E-14 6.5E-19 120.8 15.7 172 16-218 118-299 (300)
20 PRK14967 putative methyltransf 99.6 6.3E-14 1.4E-18 115.9 16.1 143 27-198 7-174 (223)
21 PRK15001 SAM-dependent 23S rib 99.6 1E-13 2.2E-18 122.6 17.9 151 41-219 213-374 (378)
22 COG2227 UbiG 2-polyprenyl-3-me 99.6 7.9E-15 1.7E-19 120.4 9.8 109 58-192 59-170 (243)
23 TIGR00138 gidB 16S rRNA methyl 99.6 3.1E-14 6.8E-19 114.2 13.1 114 58-198 42-156 (181)
24 PF13847 Methyltransf_31: Meth 99.6 5.4E-14 1.2E-18 109.4 13.2 106 57-185 2-112 (152)
25 COG2890 HemK Methylase of poly 99.6 1.6E-13 3.5E-18 117.2 16.9 145 25-199 79-253 (280)
26 PF08241 Methyltransf_11: Meth 99.6 4.1E-14 9E-19 100.1 11.1 92 63-181 1-95 (95)
27 PRK11783 rlmL 23S rRNA m(2)G24 99.6 5.6E-14 1.2E-18 133.7 15.3 141 24-186 505-659 (702)
28 PF10672 Methyltrans_SAM: S-ad 99.6 4.7E-14 1E-18 120.2 13.1 157 22-198 88-254 (286)
29 TIGR03704 PrmC_rel_meth putati 99.6 2.4E-13 5.1E-18 114.5 16.8 146 25-199 53-231 (251)
30 COG2230 Cfa Cyclopropane fatty 99.6 1.2E-13 2.7E-18 116.7 15.1 107 56-188 70-181 (283)
31 PLN02233 ubiquinone biosynthes 99.6 1.3E-13 2.8E-18 116.7 15.2 111 56-188 71-187 (261)
32 PF13659 Methyltransf_26: Meth 99.6 1.4E-14 2.9E-19 107.4 8.2 103 59-182 1-114 (117)
33 TIGR00740 methyltransferase, p 99.6 1.3E-13 2.8E-18 115.1 15.0 106 56-186 51-164 (239)
34 KOG1540 Ubiquinone biosynthesi 99.6 8.3E-14 1.8E-18 114.8 13.4 126 57-204 99-236 (296)
35 PRK00107 gidB 16S rRNA methylt 99.6 7.1E-14 1.5E-18 112.6 12.6 112 56-194 43-155 (187)
36 TIGR02752 MenG_heptapren 2-hep 99.6 3.1E-13 6.8E-18 111.9 16.6 113 56-192 43-160 (231)
37 PRK11207 tellurite resistance 99.6 1.3E-13 2.9E-18 111.9 14.0 98 58-181 30-132 (197)
38 PF02353 CMAS: Mycolic acid cy 99.6 6E-14 1.3E-18 119.4 12.4 131 30-186 24-169 (273)
39 TIGR00536 hemK_fam HemK family 99.5 4.7E-13 1E-17 114.6 18.1 144 26-197 82-257 (284)
40 PLN02244 tocopherol O-methyltr 99.5 1.5E-13 3.3E-18 120.5 14.8 105 57-184 117-224 (340)
41 PRK10258 biotin biosynthesis p 99.5 3.1E-13 6.8E-18 113.4 15.7 110 58-197 42-154 (251)
42 PRK13168 rumA 23S rRNA m(5)U19 99.5 1E-13 2.2E-18 125.6 13.6 158 25-204 263-421 (443)
43 KOG1270 Methyltransferases [Co 99.5 1.6E-14 3.6E-19 119.5 7.4 101 59-185 90-197 (282)
44 TIGR00477 tehB tellurite resis 99.5 1.6E-13 3.4E-18 111.3 12.9 98 58-182 30-132 (195)
45 PRK00121 trmB tRNA (guanine-N( 99.5 1.1E-13 2.4E-18 112.8 11.3 122 56-199 38-172 (202)
46 PRK12335 tellurite resistance 99.5 2.7E-13 5.9E-18 116.2 13.8 125 29-182 91-222 (287)
47 TIGR02469 CbiT precorrin-6Y C5 99.5 8.6E-13 1.9E-17 98.2 14.4 104 57-183 18-122 (124)
48 PRK01544 bifunctional N5-gluta 99.5 6.4E-13 1.4E-17 122.1 16.4 116 59-199 139-284 (506)
49 TIGR03534 RF_mod_PrmC protein- 99.5 7.9E-13 1.7E-17 110.5 15.4 121 57-203 86-237 (251)
50 COG2242 CobL Precorrin-6B meth 99.5 9.6E-13 2.1E-17 104.5 14.7 119 56-199 32-151 (187)
51 PRK11036 putative S-adenosyl-L 99.5 3.3E-13 7.3E-18 113.7 12.5 109 51-182 37-148 (255)
52 PTZ00098 phosphoethanolamine N 99.5 4.8E-13 1E-17 113.4 13.5 105 56-186 50-159 (263)
53 PRK14968 putative methyltransf 99.5 1.7E-12 3.6E-17 103.8 15.7 119 57-199 22-164 (188)
54 PLN02396 hexaprenyldihydroxybe 99.5 2.1E-13 4.6E-18 118.4 11.0 104 58-185 131-237 (322)
55 PRK09328 N5-glutamine S-adenos 99.5 6.9E-12 1.5E-16 106.4 18.5 144 27-199 78-253 (275)
56 PRK00377 cbiT cobalt-precorrin 99.5 1.8E-12 4E-17 105.2 14.3 121 56-198 38-160 (198)
57 PF03848 TehB: Tellurite resis 99.5 9.7E-13 2.1E-17 105.9 12.4 100 58-184 30-134 (192)
58 TIGR01177 conserved hypothetic 99.5 2E-12 4.3E-17 113.0 15.3 111 56-191 180-302 (329)
59 PRK10909 rsmD 16S rRNA m(2)G96 99.5 1.3E-12 2.9E-17 106.2 12.5 135 26-187 22-163 (199)
60 PRK11705 cyclopropane fatty ac 99.4 1.5E-12 3.2E-17 115.8 13.4 128 28-185 128-269 (383)
61 PRK13944 protein-L-isoaspartat 99.4 3.7E-12 8.1E-17 104.0 14.5 101 56-182 70-172 (205)
62 PRK03522 rumB 23S rRNA methylu 99.4 2E-12 4.4E-17 112.2 13.5 145 26-195 140-286 (315)
63 PRK11873 arsM arsenite S-adeno 99.4 1.7E-12 3.8E-17 110.2 12.7 105 56-184 75-184 (272)
64 TIGR00080 pimt protein-L-isoas 99.4 2.9E-12 6.2E-17 105.4 13.6 100 56-182 75-176 (215)
65 PRK14103 trans-aconitate 2-met 99.4 1.7E-12 3.7E-17 109.3 12.4 96 57-184 28-127 (255)
66 TIGR00091 tRNA (guanine-N(7)-) 99.4 1.9E-12 4.2E-17 104.8 11.3 120 58-198 16-147 (194)
67 TIGR00452 methyltransferase, p 99.4 1.9E-12 4.2E-17 112.0 11.7 104 57-184 120-226 (314)
68 PRK15068 tRNA mo(5)U34 methylt 99.4 4E-12 8.6E-17 110.7 13.7 103 58-184 122-227 (322)
69 PLN02336 phosphoethanolamine N 99.4 3.8E-12 8.2E-17 116.3 14.1 105 56-185 264-371 (475)
70 TIGR02072 BioC biotin biosynth 99.4 9E-12 1.9E-16 102.9 14.9 110 58-195 34-147 (240)
71 PRK01683 trans-aconitate 2-met 99.4 6E-12 1.3E-16 106.0 13.2 97 57-183 30-130 (258)
72 PRK07402 precorrin-6B methylas 99.4 1.8E-11 4E-16 99.1 15.2 132 42-197 22-156 (196)
73 KOG2904 Predicted methyltransf 99.4 3.4E-11 7.4E-16 100.4 16.4 153 24-199 112-301 (328)
74 PF13489 Methyltransf_23: Meth 99.4 4.8E-12 1E-16 98.2 10.7 96 56-186 20-118 (161)
75 TIGR02085 meth_trns_rumB 23S r 99.4 5.4E-12 1.2E-16 112.1 12.4 144 26-195 200-346 (374)
76 PF13649 Methyltransf_25: Meth 99.4 3E-12 6.5E-17 92.7 8.8 91 62-177 1-101 (101)
77 smart00828 PKS_MT Methyltransf 99.4 7.1E-12 1.5E-16 103.3 12.0 102 60-185 1-106 (224)
78 PRK13942 protein-L-isoaspartat 99.4 1.5E-11 3.3E-16 101.0 13.9 100 56-182 74-175 (212)
79 PLN02672 methionine S-methyltr 99.4 2.4E-11 5.1E-16 118.9 17.4 150 23-198 83-293 (1082)
80 PLN02490 MPBQ/MSBQ methyltrans 99.4 1.8E-11 3.8E-16 107.0 14.8 100 57-183 112-215 (340)
81 PRK04266 fibrillarin; Provisio 99.4 3.1E-11 6.8E-16 100.0 15.6 103 56-181 70-174 (226)
82 PRK06922 hypothetical protein; 99.4 1.1E-11 2.3E-16 115.2 13.8 104 58-184 418-538 (677)
83 PRK05785 hypothetical protein; 99.4 2.5E-11 5.4E-16 100.7 14.1 88 57-176 50-140 (226)
84 TIGR00446 nop2p NOL1/NOP2/sun 99.3 2.5E-11 5.3E-16 103.0 14.2 117 56-196 69-214 (264)
85 PF08242 Methyltransf_12: Meth 99.3 2.7E-13 5.8E-18 97.7 1.6 95 63-179 1-99 (99)
86 PLN02781 Probable caffeoyl-CoA 99.3 1.6E-11 3.4E-16 102.4 12.3 109 58-183 68-178 (234)
87 PRK14901 16S rRNA methyltransf 99.3 2E-11 4.3E-16 110.4 13.7 142 37-198 229-402 (434)
88 TIGR00479 rumA 23S rRNA (uraci 99.3 1.2E-11 2.6E-16 111.8 12.1 150 26-197 259-410 (431)
89 TIGR00095 RNA methyltransferas 99.3 2E-11 4.4E-16 98.6 12.1 123 41-182 29-158 (189)
90 PRK08317 hypothetical protein; 99.3 5E-11 1.1E-15 98.3 14.5 103 56-183 17-124 (241)
91 PRK10901 16S rRNA methyltransf 99.3 3.1E-11 6.8E-16 108.9 14.3 120 56-198 242-390 (427)
92 PRK14903 16S rRNA methyltransf 99.3 2.6E-11 5.6E-16 109.5 13.3 124 37-183 214-366 (431)
93 PRK11188 rrmJ 23S rRNA methylt 99.3 1.8E-11 3.9E-16 100.4 11.1 122 56-204 49-186 (209)
94 PRK14121 tRNA (guanine-N(7)-)- 99.3 2.6E-11 5.7E-16 107.2 12.9 116 58-195 122-247 (390)
95 PF03602 Cons_hypoth95: Conser 99.3 1.1E-11 2.3E-16 99.7 9.4 138 24-184 8-154 (183)
96 PRK11088 rrmA 23S rRNA methylt 99.3 4.3E-11 9.3E-16 101.8 13.6 119 44-195 70-193 (272)
97 PRK00811 spermidine synthase; 99.3 7.7E-11 1.7E-15 100.9 15.2 140 58-218 76-237 (283)
98 PRK00216 ubiE ubiquinone/menaq 99.3 5.3E-11 1.1E-15 98.4 13.8 106 58-186 51-161 (239)
99 PF02475 Met_10: Met-10+ like- 99.3 1.9E-11 4E-16 99.4 9.9 135 18-181 64-200 (200)
100 TIGR00563 rsmB ribosomal RNA s 99.3 6.4E-11 1.4E-15 106.9 14.3 122 56-198 236-386 (426)
101 PRK00312 pcm protein-L-isoaspa 99.3 1.2E-10 2.5E-15 95.5 14.5 100 56-183 76-175 (212)
102 PF08003 Methyltransf_9: Prote 99.3 2.4E-11 5.3E-16 103.2 10.7 99 58-182 115-218 (315)
103 COG2519 GCD14 tRNA(1-methylade 99.3 5.7E-11 1.2E-15 98.4 12.6 124 56-205 92-218 (256)
104 PHA03412 putative methyltransf 99.3 4.1E-11 8.8E-16 99.1 11.6 93 58-180 49-160 (241)
105 TIGR02021 BchM-ChlM magnesium 99.3 6.2E-11 1.4E-15 97.5 12.7 99 57-182 54-157 (219)
106 PRK14904 16S rRNA methyltransf 99.3 1E-10 2.2E-15 106.1 15.0 104 56-184 248-378 (445)
107 PRK14902 16S rRNA methyltransf 99.3 6.4E-11 1.4E-15 107.4 13.5 104 56-182 248-378 (444)
108 COG2263 Predicted RNA methylas 99.3 2.3E-11 5E-16 96.5 8.9 76 58-161 45-120 (198)
109 COG0742 N6-adenine-specific me 99.3 9E-11 2E-15 93.6 12.2 126 39-184 20-155 (187)
110 PF05401 NodS: Nodulation prot 99.3 1.3E-10 2.9E-15 93.1 13.1 133 60-220 45-198 (201)
111 COG2265 TrmA SAM-dependent met 99.3 5.1E-11 1.1E-15 107.2 12.0 152 26-200 260-413 (432)
112 PLN03075 nicotianamine synthas 99.3 2E-10 4.3E-15 98.2 14.7 103 58-183 123-233 (296)
113 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 1.5E-10 3.3E-15 94.6 13.6 102 58-185 39-145 (223)
114 COG4122 Predicted O-methyltran 99.2 1.4E-10 3.1E-15 95.1 12.6 119 45-184 47-167 (219)
115 TIGR00438 rrmJ cell division p 99.2 1.3E-10 2.7E-15 93.6 12.0 119 56-201 30-164 (188)
116 PF01596 Methyltransf_3: O-met 99.2 1.4E-10 2.9E-15 94.8 12.2 110 58-184 45-156 (205)
117 KOG4300 Predicted methyltransf 99.2 8.8E-11 1.9E-15 94.3 10.7 119 60-201 78-200 (252)
118 PHA03411 putative methyltransf 99.2 1.1E-10 2.3E-15 98.7 11.3 112 57-199 63-205 (279)
119 PLN02476 O-methyltransferase 99.2 2.2E-10 4.8E-15 97.3 13.3 108 58-182 118-227 (278)
120 TIGR03587 Pse_Me-ase pseudamin 99.2 2.1E-10 4.5E-15 93.8 12.7 97 56-184 41-143 (204)
121 PRK04457 spermidine synthase; 99.2 2.7E-10 5.9E-15 96.5 13.5 136 43-201 52-196 (262)
122 smart00650 rADc Ribosomal RNA 99.2 2.3E-10 5.1E-15 90.5 12.3 99 57-182 12-112 (169)
123 TIGR03840 TMPT_Se_Te thiopurin 99.2 3.1E-10 6.6E-15 93.3 13.3 103 57-184 33-153 (213)
124 TIGR02143 trmA_only tRNA (urac 99.2 8.9E-11 1.9E-15 103.5 10.7 156 27-196 166-324 (353)
125 PF01135 PCMT: Protein-L-isoas 99.2 6.2E-11 1.3E-15 97.1 9.0 107 46-181 62-170 (209)
126 smart00138 MeTrc Methyltransfe 99.2 6.9E-11 1.5E-15 100.2 9.1 124 58-182 99-241 (264)
127 COG2520 Predicted methyltransf 99.2 2.1E-10 4.6E-15 99.7 12.2 144 18-189 151-295 (341)
128 PLN02366 spermidine synthase 99.2 1.6E-09 3.6E-14 93.6 17.8 143 57-219 90-254 (308)
129 PRK05031 tRNA (uracil-5-)-meth 99.2 9.3E-11 2E-15 103.7 10.3 152 27-195 175-332 (362)
130 COG2518 Pcm Protein-L-isoaspar 99.2 2.2E-10 4.9E-15 92.8 11.4 99 56-182 70-168 (209)
131 COG4106 Tam Trans-aconitate me 99.2 9.7E-11 2.1E-15 94.7 9.1 96 57-182 29-128 (257)
132 KOG1271 Methyltransferases [Ge 99.2 1.4E-10 3.1E-15 91.4 9.7 137 35-199 41-196 (227)
133 TIGR02716 C20_methyl_CrtF C-20 99.2 2.9E-10 6.3E-15 98.3 12.7 102 57-184 148-255 (306)
134 PRK06202 hypothetical protein; 99.2 1.5E-10 3.3E-15 96.1 10.1 100 58-186 60-169 (232)
135 TIGR03438 probable methyltrans 99.2 5.9E-10 1.3E-14 96.3 13.9 119 56-192 61-186 (301)
136 KOG3191 Predicted N6-DNA-methy 99.2 8.7E-10 1.9E-14 86.9 13.4 115 59-199 44-184 (209)
137 TIGR01983 UbiG ubiquinone bios 99.2 9.8E-10 2.1E-14 90.4 14.4 104 58-185 45-151 (224)
138 PF01170 UPF0020: Putative RNA 99.2 6.7E-10 1.5E-14 88.9 12.9 104 56-182 26-150 (179)
139 PLN02336 phosphoethanolamine N 99.2 3.1E-10 6.6E-15 103.8 12.3 101 58-183 37-142 (475)
140 COG1041 Predicted DNA modifica 99.2 3.2E-10 6.9E-15 98.1 11.6 104 56-184 195-311 (347)
141 PRK13255 thiopurine S-methyltr 99.2 7.5E-10 1.6E-14 91.4 13.1 100 57-181 36-153 (218)
142 TIGR00417 speE spermidine synt 99.2 1.7E-09 3.7E-14 92.0 15.6 140 58-218 72-232 (270)
143 PRK04338 N(2),N(2)-dimethylgua 99.2 6.1E-10 1.3E-14 99.1 13.4 126 28-182 31-157 (382)
144 PF08704 GCD14: tRNA methyltra 99.1 7.5E-10 1.6E-14 92.7 12.7 127 56-204 38-168 (247)
145 PRK05134 bifunctional 3-demeth 99.1 6.3E-10 1.4E-14 92.2 12.2 104 57-185 47-153 (233)
146 PF02390 Methyltransf_4: Putat 99.1 5E-10 1.1E-14 90.9 11.1 118 60-198 19-148 (195)
147 PRK13943 protein-L-isoaspartat 99.1 9.6E-10 2.1E-14 95.6 13.6 100 56-182 78-179 (322)
148 PLN02585 magnesium protoporphy 99.1 1E-09 2.2E-14 95.3 13.6 110 44-180 129-247 (315)
149 KOG1499 Protein arginine N-met 99.1 2.2E-10 4.8E-15 98.7 9.2 101 57-181 59-165 (346)
150 PRK07580 Mg-protoporphyrin IX 99.1 1E-09 2.3E-14 90.5 12.9 97 57-180 62-163 (230)
151 PTZ00146 fibrillarin; Provisio 99.1 3E-09 6.4E-14 90.8 15.5 145 56-223 130-291 (293)
152 cd02440 AdoMet_MTases S-adenos 99.1 1.2E-09 2.6E-14 77.0 11.1 99 61-182 1-103 (107)
153 PF05958 tRNA_U5-meth_tr: tRNA 99.1 3.5E-10 7.7E-15 99.7 9.7 157 26-195 164-322 (352)
154 PF10294 Methyltransf_16: Puta 99.1 1.7E-09 3.6E-14 86.1 12.2 148 31-197 10-171 (173)
155 PRK01581 speE spermidine synth 99.1 1.2E-09 2.6E-14 95.6 12.0 142 57-219 149-314 (374)
156 TIGR00308 TRM1 tRNA(guanine-26 99.1 5E-10 1.1E-14 99.2 9.8 129 28-183 15-147 (374)
157 PF03291 Pox_MCEL: mRNA cappin 99.1 1.3E-09 2.8E-14 95.1 11.3 112 58-184 62-187 (331)
158 KOG2899 Predicted methyltransf 99.1 1.3E-09 2.7E-14 89.7 10.1 130 51-181 51-207 (288)
159 PRK03612 spermidine synthase; 99.1 3.4E-09 7.4E-14 98.0 14.3 142 57-219 296-460 (521)
160 PLN02589 caffeoyl-CoA O-methyl 99.0 2.6E-09 5.7E-14 89.6 11.3 109 58-182 79-189 (247)
161 KOG1541 Predicted protein carb 99.0 2.7E-09 5.9E-14 86.6 10.9 119 43-191 35-167 (270)
162 PF07021 MetW: Methionine bios 99.0 3E-09 6.6E-14 85.1 10.7 100 50-181 5-107 (193)
163 TIGR02081 metW methionine bios 99.0 2.2E-09 4.8E-14 86.8 9.9 92 54-175 9-104 (194)
164 PRK11727 23S rRNA mA1618 methy 99.0 1.8E-09 4E-14 93.6 9.6 85 58-161 114-201 (321)
165 PF05185 PRMT5: PRMT5 arginine 99.0 6.5E-09 1.4E-13 94.2 11.9 114 44-181 166-295 (448)
166 COG0220 Predicted S-adenosylme 99.0 5.8E-09 1.3E-13 86.3 10.1 106 60-186 50-167 (227)
167 PRK14896 ksgA 16S ribosomal RN 98.9 1.5E-08 3.3E-13 85.7 12.6 86 56-170 27-112 (258)
168 KOG1500 Protein arginine N-met 98.9 5.3E-09 1.1E-13 89.7 9.4 99 58-181 177-280 (517)
169 KOG2361 Predicted methyltransf 98.9 4.6E-09 1E-13 86.3 8.5 113 60-193 73-193 (264)
170 KOG1975 mRNA cap methyltransfe 98.9 8E-09 1.7E-13 88.1 10.2 127 56-199 115-250 (389)
171 KOG2187 tRNA uracil-5-methyltr 98.9 6.8E-09 1.5E-13 93.4 10.3 153 24-197 348-504 (534)
172 COG1352 CheR Methylase of chem 98.9 9.2E-09 2E-13 87.0 10.2 124 59-182 97-240 (268)
173 PLN02823 spermine synthase 98.9 4.9E-08 1.1E-12 85.4 14.7 141 58-219 103-268 (336)
174 PRK00274 ksgA 16S ribosomal RN 98.9 2.5E-08 5.4E-13 85.0 12.4 89 56-172 40-128 (272)
175 PF01739 CheR: CheR methyltran 98.9 2.4E-09 5.3E-14 86.8 5.8 123 58-182 31-174 (196)
176 COG2521 Predicted archaeal met 98.9 1.2E-08 2.7E-13 83.5 9.8 142 56-219 132-287 (287)
177 COG0116 Predicted N6-adenine-s 98.9 3.3E-08 7.2E-13 86.8 12.2 102 58-182 191-343 (381)
178 PTZ00338 dimethyladenosine tra 98.9 3.2E-08 7E-13 85.1 11.7 89 56-170 34-122 (294)
179 PRK11933 yebU rRNA (cytosine-C 98.9 4.6E-08 9.9E-13 89.1 13.3 117 56-195 111-256 (470)
180 COG4976 Predicted methyltransf 98.9 1.4E-09 3.1E-14 88.7 3.0 96 59-182 126-224 (287)
181 TIGR00755 ksgA dimethyladenosi 98.8 6.7E-08 1.5E-12 81.4 13.1 86 57-171 28-116 (253)
182 KOG3420 Predicted RNA methylas 98.8 5.1E-09 1.1E-13 79.8 5.4 79 58-161 48-126 (185)
183 TIGR00478 tly hemolysin TlyA f 98.8 8.2E-08 1.8E-12 79.6 12.8 40 57-96 74-113 (228)
184 PF02384 N6_Mtase: N-6 DNA Met 98.8 2.1E-08 4.6E-13 86.8 9.4 120 42-181 28-181 (311)
185 PRK13256 thiopurine S-methyltr 98.8 2.3E-07 5E-12 76.8 13.7 107 58-184 43-164 (226)
186 KOG3010 Methyltransferase [Gen 98.8 2.9E-08 6.3E-13 81.7 8.2 98 60-181 35-135 (261)
187 PRK10611 chemotaxis methyltran 98.7 2.4E-08 5.1E-13 85.5 7.2 124 59-182 116-261 (287)
188 KOG1661 Protein-L-isoaspartate 98.7 1.4E-07 3E-12 76.2 9.2 115 43-182 67-192 (237)
189 PRK11783 rlmL 23S rRNA m(2)G24 98.7 3.1E-07 6.6E-12 87.9 12.6 104 57-181 189-345 (702)
190 PRK00536 speE spermidine synth 98.7 1.5E-06 3.2E-11 73.5 15.1 134 58-219 72-216 (262)
191 PF01564 Spermine_synth: Sperm 98.7 3.1E-07 6.7E-12 77.2 11.1 123 58-201 76-213 (246)
192 COG1189 Predicted rRNA methyla 98.6 1.1E-07 2.5E-12 78.2 8.0 144 6-181 30-176 (245)
193 PF05891 Methyltransf_PK: AdoM 98.6 1.2E-07 2.5E-12 77.4 8.0 101 59-184 56-162 (218)
194 KOG1663 O-methyltransferase [S 98.6 9E-07 2E-11 72.5 12.9 108 58-182 73-182 (237)
195 PF02005 TRM: N2,N2-dimethylgu 98.6 1.3E-07 2.7E-12 84.1 7.8 148 11-184 3-155 (377)
196 PRK01544 bifunctional N5-gluta 98.6 4.3E-07 9.4E-12 83.8 11.3 119 58-198 347-477 (506)
197 PLN02232 ubiquinone biosynthes 98.6 6.3E-07 1.4E-11 70.3 10.4 81 85-187 1-85 (160)
198 COG0293 FtsJ 23S rRNA methylas 98.6 9.2E-07 2E-11 71.7 11.5 123 56-205 43-181 (205)
199 COG0144 Sun tRNA and rRNA cyto 98.6 1.4E-06 3.1E-11 77.0 13.6 143 36-199 132-307 (355)
200 PF06080 DUF938: Protein of un 98.6 1.4E-06 3.1E-11 70.6 12.0 120 48-184 14-142 (204)
201 PF05724 TPMT: Thiopurine S-me 98.5 3.9E-07 8.3E-12 75.2 8.6 123 56-200 35-183 (218)
202 KOG2940 Predicted methyltransf 98.5 2.8E-07 6E-12 75.6 6.9 114 58-197 72-188 (325)
203 PF09445 Methyltransf_15: RNA 98.5 2E-07 4.3E-12 73.3 5.5 55 61-117 2-56 (163)
204 PF05971 Methyltransf_10: Prot 98.5 8E-07 1.7E-11 76.2 9.5 85 59-161 103-189 (299)
205 TIGR02987 met_A_Alw26 type II 98.5 6.6E-07 1.4E-11 82.9 9.6 47 59-105 32-87 (524)
206 PF05219 DREV: DREV methyltran 98.5 1.3E-06 2.9E-11 73.0 9.9 91 58-182 94-187 (265)
207 PF00891 Methyltransf_2: O-met 98.5 1.6E-06 3.4E-11 72.4 10.4 94 58-185 100-201 (241)
208 PF01728 FtsJ: FtsJ-like methy 98.5 1.3E-06 2.9E-11 69.6 9.5 121 59-204 24-160 (181)
209 PRK00050 16S rRNA m(4)C1402 me 98.5 3.7E-06 8.1E-11 72.3 12.7 48 56-103 17-66 (296)
210 PF05148 Methyltransf_8: Hypot 98.4 4.3E-06 9.3E-11 67.9 11.7 135 46-222 61-201 (219)
211 COG0421 SpeE Spermidine syntha 98.4 2.2E-06 4.7E-11 73.3 10.6 102 60-182 78-189 (282)
212 PF04816 DUF633: Family of unk 98.4 6.5E-06 1.4E-10 67.3 12.7 115 62-201 1-118 (205)
213 COG4076 Predicted RNA methylas 98.4 5.1E-07 1.1E-11 71.9 5.5 96 59-181 33-133 (252)
214 PF12147 Methyltransf_20: Puta 98.4 2.3E-05 4.9E-10 66.6 15.2 106 58-183 135-249 (311)
215 COG1867 TRM1 N2,N2-dimethylgua 98.3 5.1E-06 1.1E-10 72.5 10.2 146 9-184 9-155 (380)
216 PF02527 GidB: rRNA small subu 98.3 4E-06 8.7E-11 67.4 9.0 96 61-182 51-147 (184)
217 KOG0820 Ribosomal RNA adenine 98.3 3E-06 6.5E-11 71.1 8.2 80 56-161 56-135 (315)
218 COG0030 KsgA Dimethyladenosine 98.3 1.4E-05 3E-10 67.3 12.2 93 56-175 28-121 (259)
219 COG3897 Predicted methyltransf 98.3 3.5E-06 7.5E-11 67.5 7.3 100 58-186 79-182 (218)
220 COG3963 Phospholipid N-methylt 98.3 9.6E-06 2.1E-10 63.5 9.5 106 56-185 46-158 (194)
221 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.2 8.5E-06 1.8E-10 69.8 9.9 139 36-196 61-234 (283)
222 COG2384 Predicted SAM-dependen 98.2 6E-05 1.3E-09 61.6 13.5 126 49-199 7-134 (226)
223 TIGR03439 methyl_EasF probable 98.2 4.6E-05 9.9E-10 66.3 13.0 125 56-196 74-210 (319)
224 KOG1122 tRNA and rRNA cytosine 98.1 4.6E-05 1E-09 67.5 12.0 119 56-196 239-386 (460)
225 PF08123 DOT1: Histone methyla 98.1 4.6E-05 1E-09 62.3 11.2 108 56-182 40-157 (205)
226 PRK04148 hypothetical protein; 98.1 5E-05 1.1E-09 57.8 10.5 97 58-187 16-113 (134)
227 COG0357 GidB Predicted S-adeno 98.1 1.4E-05 3.1E-10 65.6 8.0 115 59-199 68-186 (215)
228 PF03141 Methyltransf_29: Puta 98.1 8.6E-06 1.9E-10 73.7 6.8 124 35-187 92-223 (506)
229 COG4262 Predicted spermidine s 98.1 3.4E-05 7.4E-10 67.4 10.1 173 27-219 257-452 (508)
230 KOG3045 Predicted RNA methylas 98.1 6.9E-05 1.5E-09 62.7 11.4 120 58-220 180-305 (325)
231 KOG2915 tRNA(1-methyladenosine 98.0 9.8E-05 2.1E-09 62.1 12.0 103 56-181 103-208 (314)
232 KOG4589 Cell division protein 98.0 5.9E-05 1.3E-09 60.2 9.8 122 56-204 67-205 (232)
233 PF09243 Rsm22: Mitochondrial 98.0 0.00014 3E-09 62.1 12.8 116 58-199 33-155 (274)
234 PF00398 RrnaAD: Ribosomal RNA 97.9 0.0002 4.3E-09 60.7 12.4 95 57-175 29-123 (262)
235 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.9 5.3E-05 1.1E-09 63.9 8.6 126 58-184 56-200 (256)
236 TIGR00006 S-adenosyl-methyltra 97.9 0.00027 5.9E-09 61.0 13.0 48 56-103 18-66 (305)
237 KOG2671 Putative RNA methylase 97.9 3.8E-05 8.2E-10 66.5 7.1 105 55-181 205-352 (421)
238 COG0286 HsdM Type I restrictio 97.8 0.00038 8.2E-09 64.2 11.9 123 40-180 166-323 (489)
239 TIGR01444 fkbM_fam methyltrans 97.7 0.0001 2.3E-09 56.0 6.5 47 61-107 1-48 (143)
240 KOG2730 Methylase [General fun 97.7 7.6E-05 1.6E-09 61.0 5.6 110 29-159 66-175 (263)
241 COG0500 SmtA SAM-dependent met 97.7 0.0012 2.5E-08 48.6 11.8 99 62-185 52-157 (257)
242 PRK10742 putative methyltransf 97.7 0.00011 2.4E-09 61.5 6.6 48 56-104 84-133 (250)
243 PF03059 NAS: Nicotianamine sy 97.7 0.0005 1.1E-08 58.6 10.7 100 60-182 122-229 (276)
244 KOG1709 Guanidinoacetate methy 97.7 0.0011 2.3E-08 54.3 11.9 104 56-182 99-205 (271)
245 PF06962 rRNA_methylase: Putat 97.7 0.0012 2.6E-08 50.5 11.4 86 83-189 1-98 (140)
246 PF13578 Methyltransf_24: Meth 97.7 5.6E-05 1.2E-09 54.8 4.0 99 63-183 1-105 (106)
247 PF13679 Methyltransf_32: Meth 97.6 0.00023 4.9E-09 54.6 7.3 49 57-105 24-77 (141)
248 KOG3178 Hydroxyindole-O-methyl 97.6 0.0003 6.6E-09 61.2 8.8 93 60-184 179-276 (342)
249 KOG3115 Methyltransferase-like 97.6 0.00043 9.2E-09 56.0 8.3 47 59-105 61-108 (249)
250 COG3129 Predicted SAM-dependen 97.6 0.00016 3.5E-09 59.6 5.9 88 58-162 78-166 (292)
251 PRK11760 putative 23S rRNA C24 97.6 0.00067 1.4E-08 59.3 9.9 87 57-176 210-296 (357)
252 PF01269 Fibrillarin: Fibrilla 97.6 0.0023 5E-08 52.6 12.3 104 56-182 71-177 (229)
253 KOG0024 Sorbitol dehydrogenase 97.5 0.00067 1.5E-08 58.5 8.3 140 24-186 133-276 (354)
254 PF01861 DUF43: Protein of unk 97.4 0.015 3.2E-07 48.5 15.7 99 58-181 44-147 (243)
255 PRK11524 putative methyltransf 97.3 0.00085 1.8E-08 57.5 7.8 52 50-102 200-251 (284)
256 KOG2198 tRNA cytosine-5-methyl 97.3 0.002 4.3E-08 56.6 10.0 118 52-184 149-297 (375)
257 PF01555 N6_N4_Mtase: DNA meth 97.3 0.00062 1.3E-08 55.4 6.5 52 47-99 180-231 (231)
258 COG0275 Predicted S-adenosylme 97.3 0.0086 1.9E-07 51.4 13.3 59 47-105 11-72 (314)
259 KOG3201 Uncharacterized conser 97.3 0.00054 1.2E-08 53.6 5.1 119 58-195 29-153 (201)
260 PF01795 Methyltransf_5: MraW 97.2 0.0049 1.1E-07 53.4 10.4 47 56-102 18-65 (310)
261 PRK13699 putative methylase; P 97.1 0.0024 5.1E-08 53.1 8.0 53 50-103 155-207 (227)
262 KOG1501 Arginine N-methyltrans 97.1 0.0012 2.6E-08 59.1 5.8 55 61-116 69-123 (636)
263 PF07942 N2227: N2227-like pro 97.0 0.0094 2E-07 50.7 10.8 41 59-100 57-97 (270)
264 KOG1227 Putative methyltransfe 97.0 0.0012 2.6E-08 56.4 5.2 137 18-184 158-298 (351)
265 KOG1269 SAM-dependent methyltr 97.0 0.0021 4.5E-08 57.0 7.0 104 56-182 108-214 (364)
266 KOG1253 tRNA methyltransferase 97.0 0.00041 8.8E-09 62.8 2.4 107 58-184 109-217 (525)
267 COG1889 NOP1 Fibrillarin-like 96.9 0.022 4.8E-07 46.3 11.3 104 56-182 74-179 (231)
268 KOG4058 Uncharacterized conser 96.9 0.013 2.7E-07 45.4 9.2 117 44-185 57-174 (199)
269 PHA01634 hypothetical protein 96.8 0.003 6.5E-08 47.5 5.5 49 58-106 28-76 (156)
270 PF11968 DUF3321: Putative met 96.8 0.0058 1.3E-07 50.1 7.7 141 43-221 30-195 (219)
271 KOG1099 SAM-dependent methyltr 96.8 0.0044 9.6E-08 51.2 6.5 120 58-204 41-184 (294)
272 KOG1331 Predicted methyltransf 96.7 0.003 6.6E-08 53.6 5.2 103 48-184 36-144 (293)
273 PF07091 FmrO: Ribosomal RNA m 96.7 0.014 3E-07 48.9 9.0 51 57-107 104-155 (251)
274 COG1063 Tdh Threonine dehydrog 96.7 0.0042 9.2E-08 54.8 6.2 105 58-188 168-274 (350)
275 cd00315 Cyt_C5_DNA_methylase C 96.6 0.0072 1.6E-07 51.6 7.2 42 61-102 2-43 (275)
276 KOG3987 Uncharacterized conser 96.5 0.00035 7.7E-09 56.7 -1.3 90 58-181 112-205 (288)
277 KOG2078 tRNA modification enzy 96.5 0.0027 5.8E-08 56.7 3.7 98 18-121 212-311 (495)
278 PF05711 TylF: Macrocin-O-meth 96.5 0.072 1.6E-06 44.8 12.1 141 59-219 75-248 (248)
279 KOG1562 Spermidine synthase [A 96.5 0.031 6.8E-07 47.9 9.9 106 58-183 121-236 (337)
280 PF11599 AviRa: RRNA methyltra 96.5 0.007 1.5E-07 49.5 5.7 46 58-103 51-99 (246)
281 COG1064 AdhP Zn-dependent alco 96.5 0.018 3.9E-07 50.5 8.6 96 56-185 164-261 (339)
282 KOG2352 Predicted spermine/spe 96.4 0.032 7E-07 50.8 10.3 101 56-181 45-159 (482)
283 PF04989 CmcI: Cephalosporin h 96.4 0.043 9.4E-07 44.8 9.7 110 58-184 32-148 (206)
284 PF04672 Methyltransf_19: S-ad 96.3 0.092 2E-06 44.5 12.0 117 60-191 70-198 (267)
285 KOG2798 Putative trehalase [Ca 96.3 0.051 1.1E-06 47.0 10.1 134 43-181 129-294 (369)
286 TIGR01202 bchC 2-desacetyl-2-h 95.9 0.082 1.8E-06 45.5 10.1 87 58-184 144-232 (308)
287 PF00145 DNA_methylase: C-5 cy 95.8 0.081 1.8E-06 45.4 9.4 42 61-102 2-43 (335)
288 KOG1596 Fibrillarin and relate 95.7 0.024 5.2E-07 47.3 5.5 104 56-182 154-260 (317)
289 COG5459 Predicted rRNA methyla 95.4 0.19 4E-06 44.3 10.0 121 58-199 113-241 (484)
290 PRK09880 L-idonate 5-dehydroge 95.3 0.15 3.2E-06 44.5 9.6 98 57-184 168-267 (343)
291 KOG2793 Putative N2,N2-dimethy 95.1 0.17 3.7E-06 42.5 8.8 110 59-187 87-203 (248)
292 PF03141 Methyltransf_29: Puta 95.1 0.028 6.1E-07 51.4 4.5 95 61-184 368-468 (506)
293 cd08237 ribitol-5-phosphate_DH 94.9 0.12 2.7E-06 45.1 7.7 94 56-184 161-257 (341)
294 PF04445 SAM_MT: Putative SAM- 94.7 0.084 1.8E-06 44.0 5.9 80 61-162 78-164 (234)
295 TIGR00497 hsdM type I restrict 94.6 0.21 4.5E-06 46.3 9.0 69 39-107 194-271 (501)
296 cd08283 FDH_like_1 Glutathione 94.6 0.075 1.6E-06 47.3 5.7 45 56-100 182-228 (386)
297 PF07757 AdoMet_MTase: Predict 94.4 0.047 1E-06 39.8 3.2 65 15-90 23-89 (112)
298 PF10237 N6-adenineMlase: Prob 94.2 1.4 3E-05 34.7 11.3 109 44-182 11-122 (162)
299 TIGR00675 dcm DNA-methyltransf 94.1 0.28 6.1E-06 42.7 8.2 41 62-102 1-41 (315)
300 PRK11524 putative methyltransf 94.1 0.073 1.6E-06 45.6 4.5 37 146-182 24-79 (284)
301 COG0270 Dcm Site-specific DNA 94.1 0.27 5.8E-06 43.0 8.0 44 59-102 3-46 (328)
302 PRK09424 pntA NAD(P) transhydr 93.9 0.37 8E-06 44.8 8.8 110 58-184 164-286 (509)
303 PF06859 Bin3: Bicoid-interact 93.7 0.065 1.4E-06 39.2 2.9 34 149-182 1-43 (110)
304 KOG0822 Protein kinase inhibit 93.7 0.22 4.7E-06 46.1 6.8 115 44-182 348-477 (649)
305 COG4798 Predicted methyltransf 93.7 0.35 7.5E-06 39.3 7.2 32 56-87 46-79 (238)
306 KOG2912 Predicted DNA methylas 93.2 0.24 5.1E-06 43.1 5.9 79 63-160 107-189 (419)
307 PRK13699 putative methylase; P 93.1 0.13 2.8E-06 42.6 4.1 52 146-198 17-86 (227)
308 TIGR03451 mycoS_dep_FDH mycoth 93.0 0.25 5.5E-06 43.3 6.1 103 56-185 174-278 (358)
309 KOG2920 Predicted methyltransf 93.0 0.073 1.6E-06 45.3 2.5 54 42-95 95-153 (282)
310 KOG1098 Putative SAM-dependent 92.8 0.3 6.6E-06 45.9 6.3 122 56-204 42-179 (780)
311 cd08281 liver_ADH_like1 Zinc-d 92.6 0.55 1.2E-05 41.4 7.7 101 56-184 189-291 (371)
312 KOG2352 Predicted spermine/spe 92.6 0.27 5.9E-06 44.9 5.7 126 58-200 295-435 (482)
313 TIGR02822 adh_fam_2 zinc-bindi 92.5 1.9 4.2E-05 37.3 10.9 91 56-184 163-255 (329)
314 PF00107 ADH_zinc_N: Zinc-bind 92.5 0.089 1.9E-06 38.9 2.1 91 68-186 1-92 (130)
315 COG1568 Predicted methyltransf 92.5 1 2.2E-05 38.6 8.5 101 58-182 152-259 (354)
316 PRK05708 2-dehydropantoate 2-r 92.5 2.1 4.5E-05 37.0 10.9 113 60-196 3-117 (305)
317 PF03492 Methyltransf_7: SAM d 92.5 1 2.2E-05 39.6 9.0 19 58-76 16-34 (334)
318 COG0863 DNA modification methy 92.4 0.61 1.3E-05 39.6 7.6 54 50-104 214-267 (302)
319 COG1062 AdhC Zn-dependent alco 92.1 0.33 7.2E-06 42.6 5.4 51 56-106 183-235 (366)
320 PLN02668 indole-3-acetate carb 92.0 1.8 4E-05 38.8 10.2 18 59-76 64-81 (386)
321 TIGR03366 HpnZ_proposed putati 91.6 0.47 1E-05 40.1 5.9 99 57-184 119-219 (280)
322 cd05188 MDR Medium chain reduc 91.5 0.75 1.6E-05 37.7 6.9 100 57-184 133-233 (271)
323 PF02558 ApbA: Ketopantoate re 91.5 0.97 2.1E-05 34.3 7.0 50 147-196 65-114 (151)
324 KOG2651 rRNA adenine N-6-methy 91.4 0.72 1.6E-05 41.1 6.7 43 58-100 153-195 (476)
325 cd08255 2-desacetyl-2-hydroxye 91.3 3.6 7.8E-05 34.2 11.0 95 56-184 95-191 (277)
326 cd08254 hydroxyacyl_CoA_DH 6-h 91.1 0.74 1.6E-05 39.4 6.6 101 56-184 163-264 (338)
327 cd08230 glucose_DH Glucose deh 90.8 1.7 3.7E-05 37.9 8.8 96 57-185 171-271 (355)
328 PRK10309 galactitol-1-phosphat 90.7 0.99 2.2E-05 39.2 7.2 102 56-185 158-262 (347)
329 PF08484 Methyltransf_14: C-me 90.2 0.7 1.5E-05 36.2 5.2 103 44-181 53-157 (160)
330 cd08239 THR_DH_like L-threonin 90.2 1.2 2.6E-05 38.5 7.2 101 56-184 161-263 (339)
331 PLN02740 Alcohol dehydrogenase 90.2 2.6 5.5E-05 37.4 9.4 44 56-99 196-241 (381)
332 TIGR02825 B4_12hDH leukotriene 90.1 2.7 5.8E-05 36.1 9.3 99 56-183 136-237 (325)
333 PF02636 Methyltransf_28: Puta 89.9 0.81 1.8E-05 38.3 5.7 45 59-103 19-72 (252)
334 PF11899 DUF3419: Protein of u 89.4 1.3 2.9E-05 39.6 7.0 58 41-101 20-77 (380)
335 COG1748 LYS9 Saccharopine dehy 89.3 2.5 5.4E-05 38.0 8.5 41 60-100 2-44 (389)
336 PRK10458 DNA cytosine methylas 88.9 1.8 3.9E-05 39.8 7.6 43 59-101 88-130 (467)
337 KOG0022 Alcohol dehydrogenase, 88.8 0.96 2.1E-05 39.4 5.3 48 55-102 189-238 (375)
338 PLN02827 Alcohol dehydrogenase 88.8 2.8 6E-05 37.2 8.6 103 56-185 191-297 (378)
339 cd08285 NADP_ADH NADP(H)-depen 88.7 1.5 3.2E-05 38.2 6.7 102 56-184 164-267 (351)
340 COG1565 Uncharacterized conser 88.2 2.2 4.8E-05 37.8 7.3 58 47-104 65-132 (370)
341 PF02254 TrkA_N: TrkA-N domain 88.1 7.7 0.00017 27.8 9.7 89 67-182 4-95 (116)
342 cd08236 sugar_DH NAD(P)-depend 87.7 3.8 8.2E-05 35.3 8.6 100 56-183 157-258 (343)
343 cd05278 FDH_like Formaldehyde 87.7 2 4.2E-05 37.1 6.8 100 56-182 165-266 (347)
344 TIGR02818 adh_III_F_hyde S-(hy 87.7 5 0.00011 35.3 9.4 44 56-99 183-228 (368)
345 PRK01747 mnmC bifunctional tRN 87.5 1.3 2.9E-05 42.3 6.1 34 148-181 165-204 (662)
346 cd00401 AdoHcyase S-adenosyl-L 87.5 3 6.6E-05 37.8 8.0 89 57-185 200-291 (413)
347 PRK06522 2-dehydropantoate 2-r 87.2 8.2 0.00018 32.7 10.3 107 61-193 2-110 (304)
348 PRK06249 2-dehydropantoate 2-r 87.1 4.4 9.6E-05 35.0 8.6 50 147-196 70-119 (313)
349 PLN03154 putative allyl alcoho 87.0 2 4.3E-05 37.6 6.4 101 56-184 156-259 (348)
350 PF03269 DUF268: Caenorhabditi 86.9 4.1 8.8E-05 32.1 7.2 33 59-91 2-34 (177)
351 PF02153 PDH: Prephenate dehyd 86.8 1.9 4.2E-05 36.3 6.0 74 73-180 2-76 (258)
352 PF02086 MethyltransfD12: D12 86.8 1.1 2.4E-05 37.2 4.6 44 58-102 20-63 (260)
353 COG0287 TyrA Prephenate dehydr 86.6 3.3 7.1E-05 35.5 7.3 89 60-180 4-95 (279)
354 COG1893 ApbA Ketopantoate redu 85.8 5.9 0.00013 34.4 8.7 113 60-197 1-115 (307)
355 PF10354 DUF2431: Domain of un 85.8 15 0.00033 28.8 10.3 39 146-184 72-126 (166)
356 PRK12921 2-dehydropantoate 2-r 85.8 7.6 0.00016 33.0 9.3 46 148-193 67-112 (305)
357 TIGR02819 fdhA_non_GSH formald 85.8 3 6.5E-05 37.3 7.0 106 56-185 183-301 (393)
358 TIGR03201 dearomat_had 6-hydro 85.7 4.8 0.0001 35.0 8.2 43 56-99 164-208 (349)
359 TIGR00561 pntA NAD(P) transhyd 85.5 1.3 2.7E-05 41.3 4.5 41 58-99 163-205 (511)
360 PRK07502 cyclohexadienyl dehyd 85.4 6.2 0.00014 33.9 8.6 89 60-181 7-98 (307)
361 cd08294 leukotriene_B4_DH_like 84.9 8.3 0.00018 32.8 9.2 98 56-182 141-240 (329)
362 cd08300 alcohol_DH_class_III c 84.5 2.7 5.9E-05 36.9 6.1 103 56-185 184-290 (368)
363 cd08277 liver_alcohol_DH_like 83.8 9.8 0.00021 33.3 9.4 44 56-99 182-227 (365)
364 PRK15001 SAM-dependent 23S rib 83.5 33 0.00072 30.7 14.1 97 61-186 47-145 (378)
365 PRK05808 3-hydroxybutyryl-CoA 82.9 26 0.00055 29.6 11.3 109 61-196 5-130 (282)
366 cd08301 alcohol_DH_plants Plan 82.8 12 0.00025 32.8 9.4 44 56-99 185-230 (369)
367 PRK07417 arogenate dehydrogena 82.7 7.9 0.00017 32.8 8.0 84 61-179 2-87 (279)
368 cd08238 sorbose_phosphate_red 82.6 14 0.0003 33.1 10.0 45 56-100 173-222 (410)
369 PRK11064 wecC UDP-N-acetyl-D-m 82.6 33 0.00071 31.0 12.4 49 149-197 75-134 (415)
370 cd08232 idonate-5-DH L-idonate 82.3 6.2 0.00013 33.9 7.4 95 58-182 165-261 (339)
371 cd08242 MDR_like Medium chain 81.8 29 0.00063 29.4 11.4 90 56-182 153-244 (319)
372 cd08233 butanediol_DH_like (2R 81.8 4.5 9.8E-05 35.1 6.4 102 56-184 170-273 (351)
373 cd08291 ETR_like_1 2-enoyl thi 81.8 4.7 0.0001 34.5 6.4 98 58-183 142-242 (324)
374 PF01555 N6_N4_Mtase: DNA meth 81.6 1.9 4.1E-05 34.6 3.7 23 162-184 35-57 (231)
375 KOG0821 Predicted ribosomal RN 80.9 2.4 5.3E-05 35.2 4.0 57 59-118 51-107 (326)
376 KOG3924 Putative protein methy 80.8 11 0.00023 34.0 8.2 109 56-183 190-308 (419)
377 PF03721 UDPG_MGDP_dh_N: UDP-g 80.8 10 0.00022 30.2 7.6 36 149-184 76-121 (185)
378 KOG2539 Mitochondrial/chloropl 80.6 11 0.00023 34.7 8.3 109 58-186 200-318 (491)
379 COG4301 Uncharacterized conser 80.6 35 0.00076 29.1 13.5 109 57-185 77-195 (321)
380 PF05206 TRM13: Methyltransfer 80.5 4.7 0.0001 34.2 5.8 36 56-91 16-57 (259)
381 PRK03659 glutathione-regulated 80.5 16 0.00035 34.7 10.0 94 60-182 401-497 (601)
382 cd08234 threonine_DH_like L-th 79.4 6.3 0.00014 33.6 6.4 99 56-183 157-257 (334)
383 PF05050 Methyltransf_21: Meth 79.0 5.6 0.00012 30.1 5.4 43 64-106 1-50 (167)
384 PF03514 GRAS: GRAS domain fam 78.9 29 0.00062 31.0 10.6 45 58-102 110-166 (374)
385 PRK03562 glutathione-regulated 78.4 27 0.00059 33.4 10.8 94 60-181 401-496 (621)
386 PLN02586 probable cinnamyl alc 78.2 8 0.00017 34.0 6.8 98 56-184 181-279 (360)
387 cd08261 Zn_ADH7 Alcohol dehydr 78.0 6.3 0.00014 33.9 6.0 101 56-183 157-258 (337)
388 PRK05225 ketol-acid reductoiso 77.7 3.7 8.1E-05 37.7 4.5 35 148-182 96-130 (487)
389 COG5379 BtaA S-adenosylmethion 77.7 6.6 0.00014 34.1 5.7 44 58-102 63-106 (414)
390 cd08269 Zn_ADH9 Alcohol dehydr 77.6 16 0.00035 30.6 8.3 101 56-183 127-229 (312)
391 COG0604 Qor NADPH:quinone redu 77.3 6.3 0.00014 34.4 5.8 100 56-184 140-242 (326)
392 cd08278 benzyl_alcohol_DH Benz 77.1 11 0.00024 32.9 7.4 100 56-183 184-285 (365)
393 cd05285 sorbitol_DH Sorbitol d 76.6 9.3 0.0002 33.0 6.7 104 56-183 160-265 (343)
394 PRK08229 2-dehydropantoate 2-r 76.5 31 0.00066 29.9 9.9 48 148-195 72-119 (341)
395 PRK12491 pyrroline-5-carboxyla 76.0 31 0.00066 29.3 9.5 101 61-196 4-109 (272)
396 cd08265 Zn_ADH3 Alcohol dehydr 75.9 6.2 0.00014 34.9 5.5 103 56-183 201-307 (384)
397 PRK07066 3-hydroxybutyryl-CoA 75.7 22 0.00048 31.1 8.7 97 60-180 8-116 (321)
398 COG0677 WecC UDP-N-acetyl-D-ma 75.5 20 0.00044 32.4 8.4 49 149-197 84-143 (436)
399 PF00106 adh_short: short chai 75.1 32 0.00068 25.9 8.7 83 61-158 2-89 (167)
400 cd08287 FDH_like_ADH3 formalde 74.9 21 0.00046 30.6 8.5 101 56-183 166-268 (345)
401 PRK06035 3-hydroxyacyl-CoA deh 74.9 22 0.00048 30.2 8.5 124 60-196 4-133 (291)
402 cd08295 double_bond_reductase_ 74.8 9.2 0.0002 33.0 6.2 101 56-183 149-251 (338)
403 PRK08507 prephenate dehydrogen 74.7 20 0.00044 30.2 8.1 84 61-180 2-88 (275)
404 TIGR00027 mthyl_TIGR00027 meth 74.3 52 0.0011 27.7 11.5 111 59-184 82-198 (260)
405 cd08231 MDR_TM0436_like Hypoth 74.1 13 0.00029 32.3 7.0 103 57-183 176-280 (361)
406 PRK10083 putative oxidoreducta 74.0 16 0.00035 31.2 7.5 44 56-99 158-204 (339)
407 PF06460 NSP13: Coronavirus NS 73.9 23 0.0005 30.2 7.9 53 146-198 118-184 (299)
408 cd08293 PTGR2 Prostaglandin re 73.8 26 0.00056 30.1 8.8 95 60-182 156-253 (345)
409 PF02737 3HCDH_N: 3-hydroxyacy 73.0 8.4 0.00018 30.6 5.0 104 62-181 2-112 (180)
410 PRK05396 tdh L-threonine 3-deh 72.7 13 0.00028 32.0 6.6 101 57-184 162-264 (341)
411 PRK07530 3-hydroxybutyryl-CoA 72.5 50 0.0011 28.0 10.1 95 60-180 5-116 (292)
412 cd08286 FDH_like_ADH2 formalde 72.4 9.1 0.0002 33.0 5.6 101 56-183 164-266 (345)
413 cd05279 Zn_ADH1 Liver alcohol 72.1 24 0.00053 30.8 8.3 102 56-183 181-285 (365)
414 PF01210 NAD_Gly3P_dh_N: NAD-d 71.9 18 0.00038 27.8 6.6 99 62-182 2-102 (157)
415 cd08298 CAD2 Cinnamyl alcohol 71.4 35 0.00076 29.0 9.0 91 56-183 165-256 (329)
416 cd08279 Zn_ADH_class_III Class 71.4 15 0.00032 32.1 6.7 100 56-182 180-281 (363)
417 cd08245 CAD Cinnamyl alcohol d 71.0 31 0.00066 29.3 8.5 96 56-183 160-256 (330)
418 cd08240 6_hydroxyhexanoate_dh_ 70.9 14 0.00031 31.9 6.5 97 58-182 175-273 (350)
419 PRK09260 3-hydroxybutyryl-CoA 70.8 44 0.00096 28.3 9.3 40 61-101 3-44 (288)
420 PF07669 Eco57I: Eco57I restri 70.2 8.7 0.00019 27.7 4.2 47 149-197 2-70 (106)
421 PLN02256 arogenate dehydrogena 70.1 40 0.00087 29.1 9.0 86 58-179 35-123 (304)
422 cd08263 Zn_ADH10 Alcohol dehyd 69.5 14 0.0003 32.3 6.1 100 57-183 186-287 (367)
423 PTZ00357 methyltransferase; Pr 69.3 14 0.0003 36.0 6.1 107 61-178 703-830 (1072)
424 PRK08293 3-hydroxybutyryl-CoA 69.1 50 0.0011 28.0 9.3 41 60-101 4-46 (287)
425 TIGR00692 tdh L-threonine 3-de 69.1 16 0.00035 31.4 6.4 102 56-184 159-262 (340)
426 cd05213 NAD_bind_Glutamyl_tRNA 68.5 16 0.00035 31.6 6.2 37 58-94 177-215 (311)
427 TIGR02356 adenyl_thiF thiazole 67.9 54 0.0012 26.4 8.9 33 58-90 20-54 (202)
428 PF07279 DUF1442: Protein of u 67.9 69 0.0015 26.5 10.4 100 59-182 42-147 (218)
429 PRK05476 S-adenosyl-L-homocyst 67.8 26 0.00056 32.0 7.5 89 58-186 211-302 (425)
430 cd05281 TDH Threonine dehydrog 67.7 22 0.00049 30.5 7.0 99 57-183 162-262 (341)
431 COG4627 Uncharacterized protei 67.4 2.5 5.4E-05 33.2 0.8 37 146-182 44-85 (185)
432 cd08256 Zn_ADH2 Alcohol dehydr 67.4 13 0.00028 32.1 5.5 100 56-182 172-273 (350)
433 PRK10669 putative cation:proto 67.2 84 0.0018 29.5 11.2 95 60-182 418-514 (558)
434 PF07991 IlvN: Acetohydroxy ac 67.1 21 0.00046 28.1 5.9 89 58-182 3-94 (165)
435 PLN02514 cinnamyl-alcohol dehy 66.8 40 0.00087 29.4 8.5 96 57-184 179-276 (357)
436 TIGR00745 apbA_panE 2-dehydrop 66.6 49 0.0011 27.7 8.8 49 147-195 57-105 (293)
437 cd01065 NAD_bind_Shikimate_DH 66.2 33 0.00071 25.7 7.0 43 58-100 18-62 (155)
438 PRK00094 gpsA NAD(P)H-dependen 66.0 73 0.0016 27.1 9.9 34 148-181 70-103 (325)
439 COG3510 CmcI Cephalosporin hyd 65.8 64 0.0014 26.4 8.5 103 58-183 69-180 (237)
440 PRK14620 NAD(P)H-dependent gly 65.5 49 0.0011 28.5 8.7 37 148-184 70-107 (326)
441 cd05284 arabinose_DH_like D-ar 65.4 31 0.00068 29.4 7.5 100 56-183 165-266 (340)
442 PRK08818 prephenate dehydrogen 64.4 29 0.00064 31.0 7.1 32 148-179 50-84 (370)
443 PLN02178 cinnamyl-alcohol dehy 64.2 17 0.00037 32.1 5.7 95 57-184 177-274 (375)
444 COG0059 IlvC Ketol-acid reduct 63.6 44 0.00096 29.2 7.7 89 58-182 17-108 (338)
445 TIGR00518 alaDH alanine dehydr 62.9 11 0.00024 33.6 4.2 39 59-98 167-207 (370)
446 TIGR00872 gnd_rel 6-phosphoglu 62.9 69 0.0015 27.4 9.0 88 61-181 2-91 (298)
447 COG3392 Adenine-specific DNA m 62.4 9 0.0002 32.7 3.3 32 57-89 26-57 (330)
448 PRK07680 late competence prote 61.9 55 0.0012 27.5 8.1 46 149-195 62-107 (273)
449 PRK06130 3-hydroxybutyryl-CoA 60.9 50 0.0011 28.2 7.8 41 60-101 5-47 (311)
450 PLN02353 probable UDP-glucose 60.9 1E+02 0.0022 28.5 10.2 41 60-100 2-45 (473)
451 cd05283 CAD1 Cinnamyl alcohol 60.8 44 0.00095 28.7 7.5 95 56-182 167-262 (337)
452 KOG0023 Alcohol dehydrogenase, 60.2 39 0.00084 29.8 6.8 45 56-100 179-224 (360)
453 PRK08655 prephenate dehydrogen 60.2 52 0.0011 30.0 8.1 33 148-180 57-89 (437)
454 cd08296 CAD_like Cinnamyl alco 59.6 41 0.00089 28.8 7.1 97 56-183 161-259 (333)
455 PRK12475 thiamine/molybdopteri 59.3 90 0.002 27.4 9.2 34 58-91 23-58 (338)
456 PRK08306 dipicolinate synthase 59.2 55 0.0012 28.1 7.7 87 58-181 151-239 (296)
457 PLN02545 3-hydroxybutyryl-CoA 59.0 81 0.0018 26.8 8.8 95 60-180 5-116 (295)
458 PRK08324 short chain dehydroge 58.9 91 0.002 30.1 9.9 42 58-101 421-466 (681)
459 PRK09496 trkA potassium transp 58.3 1.4E+02 0.003 26.8 12.5 41 58-100 230-273 (453)
460 cd08235 iditol_2_DH_like L-idi 58.2 26 0.00056 30.0 5.6 100 56-182 163-264 (343)
461 KOG1197 Predicted quinone oxid 57.9 1.2E+02 0.0027 26.0 9.2 98 56-181 144-243 (336)
462 cd08284 FDH_like_2 Glutathione 57.6 59 0.0013 27.8 7.8 100 56-183 165-266 (344)
463 COG1743 Adenine-specific DNA m 57.6 12 0.00027 36.4 3.7 44 58-102 90-133 (875)
464 PRK12548 shikimate 5-dehydroge 56.8 47 0.001 28.4 6.9 33 58-91 125-160 (289)
465 PF12692 Methyltransf_17: S-ad 56.7 43 0.00093 26.1 5.8 46 45-90 14-61 (160)
466 PRK07688 thiamine/molybdopteri 56.6 1.1E+02 0.0023 27.0 9.2 33 58-90 23-57 (339)
467 COG0686 Ald Alanine dehydrogen 55.6 31 0.00067 30.3 5.4 93 60-180 169-265 (371)
468 PRK11880 pyrroline-5-carboxyla 55.5 98 0.0021 25.7 8.6 98 61-195 4-105 (267)
469 PRK05597 molybdopterin biosynt 55.3 88 0.0019 27.7 8.5 34 58-91 27-62 (355)
470 cd08266 Zn_ADH_like1 Alcohol d 54.5 30 0.00066 29.1 5.4 99 56-182 164-264 (342)
471 PRK06153 hypothetical protein; 54.5 25 0.00054 31.7 4.9 33 58-90 175-209 (393)
472 PRK12439 NAD(P)H-dependent gly 54.4 90 0.0019 27.3 8.4 100 59-181 7-109 (341)
473 PLN02494 adenosylhomocysteinas 54.3 37 0.00081 31.4 6.1 98 58-194 253-354 (477)
474 PRK09496 trkA potassium transp 52.5 1.7E+02 0.0036 26.3 10.2 37 61-99 2-41 (453)
475 PLN02712 arogenate dehydrogena 52.3 89 0.0019 30.3 8.6 85 59-179 52-139 (667)
476 cd05289 MDR_like_2 alcohol deh 52.1 1.2E+02 0.0025 25.0 8.5 32 147-182 206-237 (309)
477 cd08262 Zn_ADH8 Alcohol dehydr 52.0 55 0.0012 27.9 6.7 44 56-99 159-204 (341)
478 cd08274 MDR9 Medium chain dehy 51.9 44 0.00095 28.6 6.0 96 56-182 175-272 (350)
479 TIGR03026 NDP-sugDHase nucleot 51.9 1.8E+02 0.0039 26.1 10.7 37 61-98 2-40 (411)
480 PRK07904 short chain dehydroge 51.6 95 0.0021 25.5 7.8 45 58-103 7-56 (253)
481 PRK15057 UDP-glucose 6-dehydro 51.4 1.8E+02 0.004 26.0 10.9 49 148-197 72-132 (388)
482 PRK06141 ornithine cyclodeamin 51.2 76 0.0017 27.4 7.4 45 58-102 124-171 (314)
483 cd08260 Zn_ADH6 Alcohol dehydr 51.0 45 0.00097 28.6 6.0 100 56-183 163-264 (345)
484 cd08241 QOR1 Quinone oxidoredu 51.0 46 0.001 27.6 5.9 43 56-98 137-181 (323)
485 PRK08762 molybdopterin biosynt 50.9 1.6E+02 0.0036 26.0 9.6 33 58-90 134-168 (376)
486 COG2933 Predicted SAM-dependen 50.8 60 0.0013 27.9 6.3 88 56-176 209-296 (358)
487 PTZ00117 malate dehydrogenase; 50.7 1.7E+02 0.0036 25.4 9.7 38 58-95 4-43 (319)
488 KOG0257 Kynurenine aminotransf 50.5 1.8E+02 0.0039 26.5 9.5 128 40-184 70-212 (420)
489 PLN02702 L-idonate 5-dehydroge 50.5 60 0.0013 28.2 6.7 104 56-183 179-285 (364)
490 PF01488 Shikimate_DH: Shikima 50.3 55 0.0012 24.4 5.6 42 58-99 11-54 (135)
491 TIGR00465 ilvC ketol-acid redu 50.0 76 0.0017 27.6 7.2 34 148-181 58-92 (314)
492 PLN02688 pyrroline-5-carboxyla 49.9 1.5E+02 0.0032 24.6 9.7 46 149-195 61-106 (266)
493 PRK09489 rsmC 16S ribosomal RN 49.6 61 0.0013 28.5 6.6 53 148-200 75-129 (342)
494 cd00739 DHPS DHPS subgroup of 49.1 1.1E+02 0.0024 25.7 7.9 37 31-67 9-45 (257)
495 PF11312 DUF3115: Protein of u 48.5 69 0.0015 28.0 6.5 21 163-183 222-242 (315)
496 cd08289 MDR_yhfp_like Yhfp put 48.5 76 0.0016 26.7 7.0 97 58-184 146-244 (326)
497 PRK13403 ketol-acid reductoiso 48.1 55 0.0012 28.9 5.9 35 148-182 70-105 (335)
498 PF03446 NAD_binding_2: NAD bi 48.0 39 0.00084 26.0 4.6 49 149-197 57-109 (163)
499 PRK08339 short chain dehydroge 47.6 1.2E+02 0.0026 25.0 7.9 44 58-102 7-53 (263)
500 COG1004 Ugd Predicted UDP-gluc 47.6 2.2E+02 0.0048 25.9 10.5 39 61-100 2-42 (414)
No 1
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=100.00 E-value=2.7e-35 Score=251.37 Aligned_cols=192 Identities=42% Similarity=0.688 Sum_probs=162.8
Q ss_pred CCCCceeecCceEEeeCCCCCCC-CcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc
Q 041459 1 ESFHPVEVTKGLWIVPEWSTPPD-VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF 79 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~ 79 (225)
+||+|+.++.+.+|+|+|+++.. .+...+.++|+|+||||.|+|+++++++|.....++++|||+|||||.+++.+++.
T Consensus 103 ~~~~P~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl 182 (295)
T PF06325_consen 103 KYFKPIRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL 182 (295)
T ss_dssp HH---EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT
T ss_pred hcCccEEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc
Confidence 37999999999999999999855 67789999999999999999999999999999889999999999999999999999
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch
Q 041459 80 GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL 159 (225)
Q Consensus 80 ~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~ 159 (225)
|+.+++|+|++|.+++.|+.|+..|++.. ++.+. ..... ...+||+|++|...
T Consensus 183 GA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~--~~~~~------------------------~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 183 GAKKVVAIDIDPLAVEAARENAELNGVED-RIEVS--LSEDL------------------------VEGKFDLVVANILA 235 (295)
T ss_dssp TBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEES--CTSCT------------------------CCS-EEEEEEES-H
T ss_pred CCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEE--Eeccc------------------------ccccCCEEEECCCH
Confidence 99999999999999999999999999884 44332 11111 34789999999999
Q ss_pred hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhhhhhcccccCCceEEEeeee
Q 041459 160 NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219 (225)
Q Consensus 160 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~k~ 219 (225)
+.+..++..+.++|+|||++++|++..++...+.+.|++.|..++....++|.++.++||
T Consensus 236 ~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 236 DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFELVEEREEGEWVALVFKKK 295 (295)
T ss_dssp HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEEEEEEEETTEEEEEEEE-
T ss_pred HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCEEEEEEEECCEEEEEEEeC
Confidence 999999999999999999999999999999999999987788888889999999999996
No 2
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-35 Score=247.37 Aligned_cols=195 Identities=43% Similarity=0.688 Sum_probs=172.9
Q ss_pred CCCCceeecCceEEeeCCCCCCCC-cceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc
Q 041459 1 ESFHPVEVTKGLWIVPEWSTPPDV-QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF 79 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~ 79 (225)
++|||++++++.+|.|+|.++.+. +...+++|||++||||.||++..++++|....++|++|||+|||||.+++.++++
T Consensus 104 ~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL 183 (300)
T COG2264 104 KYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL 183 (300)
T ss_pred hcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc
Confidence 489999999999999999998777 7899999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch
Q 041459 80 GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL 159 (225)
Q Consensus 80 ~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~ 159 (225)
|+.+++|+|++|.+++.|+.|+..|++.. ............ ...++||+|++|..-
T Consensus 184 GA~~v~g~DiDp~AV~aa~eNa~~N~v~~-~~~~~~~~~~~~-----------------------~~~~~~DvIVANILA 239 (300)
T COG2264 184 GAKKVVGVDIDPQAVEAARENARLNGVEL-LVQAKGFLLLEV-----------------------PENGPFDVIVANILA 239 (300)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHcCCch-hhhcccccchhh-----------------------cccCcccEEEehhhH
Confidence 99999999999999999999999999873 111211111111 134689999999988
Q ss_pred hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh-hhhhhcccccCCceEEEeeee
Q 041459 160 NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE-FLEDILLSEMDDWTCVSGTKK 219 (225)
Q Consensus 160 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~k~ 219 (225)
+.+..++..+.+.+||||++++|++..++...+.+.|.. .|+..+....++|.++.++|+
T Consensus 240 ~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~~eW~~i~~kr~ 300 (300)
T COG2264 240 EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLEREEWVAIVGKRK 300 (300)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEecCCEEEEEEEcC
Confidence 889999999999999999999999999999999999954 588888889999999999874
No 3
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.97 E-value=4.5e-29 Score=213.86 Aligned_cols=187 Identities=41% Similarity=0.691 Sum_probs=160.8
Q ss_pred CCCCceeecCceEEeeCCCCCC-CCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc
Q 041459 1 ESFHPVEVTKGLWIVPEWSTPP-DVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF 79 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~ 79 (225)
++|||+.++.+.+++|+|+.+. ..+...+.++|++.|+||.|+++..+++++.....++++|||+|||+|.+++.+++.
T Consensus 101 ~~~~p~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~ 180 (288)
T TIGR00406 101 DNFHPVQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL 180 (288)
T ss_pred HhCCCEEEcCeEEEECCCcCCCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc
Confidence 4899999999999999999875 567788999999999999999999999999887778999999999999999998888
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch
Q 041459 80 GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL 159 (225)
Q Consensus 80 ~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~ 159 (225)
+..+++|+|+++.+++.|++|+..+++.. .+.....+.... ..++||+|++|...
T Consensus 181 g~~~V~avDid~~al~~a~~n~~~n~~~~-~~~~~~~~~~~~------------------------~~~~fDlVvan~~~ 235 (288)
T TIGR00406 181 GAAKVVGIDIDPLAVESARKNAELNQVSD-RLQVKLIYLEQP------------------------IEGKADVIVANILA 235 (288)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCCc-ceEEEecccccc------------------------cCCCceEEEEecCH
Confidence 88899999999999999999999888652 233332221111 35689999999988
Q ss_pred hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhhhhhcccccCCce
Q 041459 160 NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILLSEMDDWT 212 (225)
Q Consensus 160 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 212 (225)
+.+..++..+.+.|||||.++++++..++..++.+.+.+.|..+...+.++|.
T Consensus 236 ~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~~~~~~~~W~ 288 (288)
T TIGR00406 236 EVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVVEIRQREEWC 288 (288)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCceeeEeccCCCC
Confidence 88889999999999999999999999888899988888777777888888884
No 4
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.97 E-value=9e-29 Score=208.02 Aligned_cols=188 Identities=46% Similarity=0.775 Sum_probs=164.3
Q ss_pred CCCCceeecCceEEeeCCCCCCCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcC
Q 041459 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG 80 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~ 80 (225)
++|+|+.++.+.++.|+|..+.......+.++|++.|++|.++++..+++.+.....++.+|||+|||+|.+++.+++.+
T Consensus 62 ~~~~p~~~g~~~~i~p~~~~~~~~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g 141 (250)
T PRK00517 62 KYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG 141 (250)
T ss_pred HHCCCEEEcCCEEEECCCcCCCCCCeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC
Confidence 47999999999999999999866777889999999999999999999999998777789999999999999999888888
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh
Q 041459 81 AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN 160 (225)
Q Consensus 81 ~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~ 160 (225)
..+++|+|+++.+++.|++|+..+++. ..+.+. . .+.+||+|++|...+
T Consensus 142 ~~~v~giDis~~~l~~A~~n~~~~~~~-~~~~~~--~----------------------------~~~~fD~Vvani~~~ 190 (250)
T PRK00517 142 AKKVLAVDIDPQAVEAARENAELNGVE-LNVYLP--Q----------------------------GDLKADVIVANILAN 190 (250)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCC-ceEEEc--c----------------------------CCCCcCEEEEcCcHH
Confidence 778999999999999999999888763 112211 1 122799999998888
Q ss_pred HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhcccccCCceEEEeeee
Q 041459 161 PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILLSEMDDWTCVSGTKK 219 (225)
Q Consensus 161 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~k~ 219 (225)
.+..++..+.+.|||||.++++++..++...+.+.+.+. |..+...+.++|.++.++|+
T Consensus 191 ~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~~~~ 250 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALVGKKK 250 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEeC
Confidence 888899999999999999999999888888888888876 88888888999999999874
No 5
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.74 E-value=1.2e-16 Score=126.95 Aligned_cols=148 Identities=26% Similarity=0.336 Sum_probs=101.4
Q ss_pred eeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 27 ~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
..+...|++.-..+..+.+..+.+.+... ++.+|||+|||+|.+++.+++.. ..+++++|+++.+++.+++|+..++
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~ 79 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG 79 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC
Confidence 35566777431122334555666666544 67899999999999999988864 4489999999999999999999999
Q ss_pred CCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh--------HHHHHHHHHHHhccCCe
Q 041459 106 IGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--------PLLQLADHIVSYAKPGA 177 (225)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--------~~~~~l~~~~~~LkpgG 177 (225)
+.+ +.+...+.-.. . +..+||+|++|||++ ....++..+.++|||||
T Consensus 80 ~~~--v~~~~~d~~~~----------------------~-~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G 134 (170)
T PF05175_consen 80 LEN--VEVVQSDLFEA----------------------L-PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGG 134 (170)
T ss_dssp CTT--EEEEESSTTTT----------------------C-CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEE
T ss_pred ccc--ccccccccccc----------------------c-cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCC
Confidence 874 55555443221 0 457899999999973 35778999999999999
Q ss_pred EEEEeccCCCcHHHHHHHHHhhhhhhc
Q 041459 178 VVGISGILSEQLPHIINRYSEFLEDIL 204 (225)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (225)
.+++..........+ +++.|...+
T Consensus 135 ~l~lv~~~~~~~~~~---l~~~f~~~~ 158 (170)
T PF05175_consen 135 RLFLVINSHLGYERL---LKELFGDVE 158 (170)
T ss_dssp EEEEEEETTSCHHHH---HHHHHS--E
T ss_pred EEEEEeecCCChHHH---HHHhcCCEE
Confidence 998753333333333 555555443
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.70 E-value=4.9e-16 Score=128.84 Aligned_cols=118 Identities=18% Similarity=0.302 Sum_probs=101.8
Q ss_pred CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
+|.+|||+|||||.+++.+++ .|..+++|+|+|+.||+.|+++....+..+ +.+...+++.+|+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~--i~fv~~dAe~LPf------------- 115 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN--VEFVVGDAENLPF------------- 115 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc--eEEEEechhhCCC-------------
Confidence 689999999999999999887 467889999999999999999998777654 7788888888876
Q ss_pred ccccccCCCCCCceeEEEeccchh---HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 137 SSHEIRGISETEKYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
++++||.+.+...+. ++...+++++|.|||||.+++.++.......+...+..+
T Consensus 116 ---------~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~ 172 (238)
T COG2226 116 ---------PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILY 172 (238)
T ss_pred ---------CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHH
Confidence 799999999988764 467889999999999999999888877776776666655
No 7
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.69 E-value=1.9e-15 Score=132.29 Aligned_cols=173 Identities=17% Similarity=0.198 Sum_probs=121.8
Q ss_pred CCCCCCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHH
Q 041459 18 WSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKS 96 (225)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~ 96 (225)
|.++. ..+..+...|+..+..+....+..++..+... ...+|||+|||+|.++..+++. +..+++++|+++.+++.
T Consensus 159 ~~~y~-~~~l~i~~~pgvFs~~~lD~gt~lLl~~l~~~--~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~ 235 (342)
T PRK09489 159 WKEYQ-VDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPH--TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALES 235 (342)
T ss_pred ceeee-cCCEEEEeCCCCCCCCCCCHHHHHHHHhcccc--CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 54554 34577888888776666667777777766432 2458999999999999998875 55689999999999999
Q ss_pred HHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--------HHHHHHH
Q 041459 97 AHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------LLQLADH 168 (225)
Q Consensus 97 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------~~~~l~~ 168 (225)
|++++..+++.. .+...+.... ..++||+|++|+|++. ...++..
T Consensus 236 A~~nl~~n~l~~---~~~~~D~~~~------------------------~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~ 288 (342)
T PRK09489 236 SRATLAANGLEG---EVFASNVFSD------------------------IKGRFDMIISNPPFHDGIQTSLDAAQTLIRG 288 (342)
T ss_pred HHHHHHHcCCCC---EEEEcccccc------------------------cCCCccEEEECCCccCCccccHHHHHHHHHH
Confidence 999999888652 2332222110 2467999999999864 3578999
Q ss_pred HHHhccCCeEEEEeccCCCcHHHHHHHHHhhhhhhc-ccccCCceEEEeeeecccc
Q 041459 169 IVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDIL-LSEMDDWTCVSGTKKRAKE 223 (225)
Q Consensus 169 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~k~~~~~ 223 (225)
+.+.|||||.+++.....-..+. .+.+.|...+ ....+.|+-+..+|-|.++
T Consensus 289 a~~~LkpgG~L~iVan~~l~y~~---~l~~~Fg~~~~la~~~~f~v~~a~~~~~~~ 341 (342)
T PRK09489 289 AVRHLNSGGELRIVANAFLPYPD---LLDETFGSHEVLAQTGRFKVYRAIMTRQAK 341 (342)
T ss_pred HHHhcCcCCEEEEEEeCCCChHH---HHHHHcCCeEEEEeCCCEEEEEEEccCcCC
Confidence 99999999999886554332333 2333343333 3355778888888777654
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.67 E-value=8e-16 Score=113.06 Aligned_cols=102 Identities=29% Similarity=0.398 Sum_probs=81.3
Q ss_pred CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC-CCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 135 (225)
|+.+|||+|||+|.+++.+++ .+..+++|+|+++.+++.|++++...+.. .++.+...+. ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~-------------- 65 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS-DRITFVQGDAEFDP-------------- 65 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT-TTEEEEESCCHGGT--------------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECccccCc--------------
Confidence 578999999999999999988 57788999999999999999999655554 5677776655 111
Q ss_pred cccccccCCCCCCceeEEEecc-chh------HHHHHHHHHHHhccCCeEEEEec
Q 041459 136 LSSHEIRGISETEKYDVVIANI-LLN------PLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~-~~~------~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
....+||+|+++. ..+ ....+++.+.+.|+|||++++..
T Consensus 66 ---------~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 66 ---------DFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ---------TTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---------ccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 1356799999988 322 24567999999999999999853
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.66 E-value=1.1e-15 Score=127.18 Aligned_cols=121 Identities=18% Similarity=0.274 Sum_probs=85.9
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
.++|.+|||+|||||.++..+++. +..+++|+|+|+.|++.|+++....+.. ++.+...++..++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~--~i~~v~~da~~lp~---------- 112 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ--NIEFVQGDAEDLPF---------- 112 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S----------
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC--CeeEEEcCHHHhcC----------
Confidence 447899999999999999998874 3468999999999999999999877754 47788888877654
Q ss_pred cccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFL 200 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 200 (225)
++++||+|++.+.+.. ....+.+++|.|||||.+++.++......-+...+.-++
T Consensus 113 ------------~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~ 170 (233)
T PF01209_consen 113 ------------PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYF 170 (233)
T ss_dssp -------------TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH--
T ss_pred ------------CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeee
Confidence 6789999999887643 577899999999999999998887666666666665443
No 10
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.66 E-value=6.9e-15 Score=117.53 Aligned_cols=125 Identities=23% Similarity=0.314 Sum_probs=93.5
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++..++.. +.+...+....
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~---~~~~~~d~~~~---------------- 78 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVG---LDVVMTDLFKG---------------- 78 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCc---eEEEEcccccc----------------
Confidence 568899999999999999888765 8999999999999999999876643 33443332211
Q ss_pred cccccCCCCCCceeEEEeccchhH------------------------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHH
Q 041459 138 SHEIRGISETEKYDVVIANILLNP------------------------LLQLADHIVSYAKPGAVVGISGILSEQLPHII 193 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 193 (225)
..++||+|++|+|+.+ +..++..+.++|||||.+++......+..++.
T Consensus 79 --------~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~ 150 (179)
T TIGR00537 79 --------VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTF 150 (179)
T ss_pred --------cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHH
Confidence 2458999999988631 34578899999999999998766666677777
Q ss_pred HHHHhh-hhhhcccccCC
Q 041459 194 NRYSEF-LEDILLSEMDD 210 (225)
Q Consensus 194 ~~~~~~-~~~~~~~~~~~ 210 (225)
+.+++. |........+.
T Consensus 151 ~~l~~~gf~~~~~~~~~~ 168 (179)
T TIGR00537 151 DKLDERGFRYEIVAERGL 168 (179)
T ss_pred HHHHhCCCeEEEEEEeec
Confidence 777665 55444444443
No 11
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.65 E-value=7e-15 Score=131.03 Aligned_cols=159 Identities=15% Similarity=0.125 Sum_probs=117.7
Q ss_pred CCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 22 PDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 22 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
..+.++.+.+|......||.+..++....++.... ++++|||+|||+|.+++.++..++.+++++|+++.+++.|++|+
T Consensus 185 v~E~g~~f~vdl~~g~ktG~flDqr~~R~~~~~~~-~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~ 263 (396)
T PRK15128 185 IEEHGMKLLVDIQGGHKTGYYLDQRDSRLATRRYV-ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNV 263 (396)
T ss_pred EEECCEEEEEecccccccCcChhhHHHHHHHHHhc-CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 44677888888888888888888877777776554 58899999999999999877777889999999999999999999
Q ss_pred HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh------------HHHHHHHHH
Q 041459 102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN------------PLLQLADHI 169 (225)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~------------~~~~~l~~~ 169 (225)
..|++..+++.+...+...+ +..+. ...++||+|++|||+. .+..++..+
T Consensus 264 ~~Ngl~~~~v~~i~~D~~~~-------l~~~~-----------~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a 325 (396)
T PRK15128 264 ELNKLDLSKAEFVRDDVFKL-------LRTYR-----------DRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLA 325 (396)
T ss_pred HHcCCCCCcEEEEEccHHHH-------HHHHH-----------hcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 99998533455555443211 11110 0245799999999961 355667788
Q ss_pred HHhccCCeEEEE-eccCCCcHHHHHHHHHhh
Q 041459 170 VSYAKPGAVVGI-SGILSEQLPHIINRYSEF 199 (225)
Q Consensus 170 ~~~LkpgG~l~~-~~~~~~~~~~~~~~~~~~ 199 (225)
.++|+|||.++. +|-..-...++.+...+.
T Consensus 326 ~~lLk~gG~lv~~scs~~~~~~~f~~~v~~a 356 (396)
T PRK15128 326 IQLLNPGGILLTFSCSGLMTSDLFQKIIADA 356 (396)
T ss_pred HHHcCCCeEEEEEeCCCcCCHHHHHHHHHHH
Confidence 999999998875 555555556666665543
No 12
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.64 E-value=1.3e-14 Score=128.20 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=123.2
Q ss_pred CCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 23 DVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 23 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
.+.+..+.++....-.||.+..++....++....+ |++|||++|-||.++++++..|++++++||.|..++++|++|+.
T Consensus 183 ~E~g~kf~v~~~~g~kTGfFlDqR~~R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~ 261 (393)
T COG1092 183 EENGVKFLVDLVDGLKTGFFLDQRDNRRALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAE 261 (393)
T ss_pred EeCCeEEEEecCCcccceeeHHhHHHHHHHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHH
Confidence 35566677788877899999999999999988887 99999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch------------hHHHHHHHHHH
Q 041459 103 LNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL------------NPLLQLADHIV 170 (225)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~------------~~~~~~l~~~~ 170 (225)
.|++..+++.+...|+ +.++.... +...+||+|+++||- ..+.+++..+.
T Consensus 262 LNg~~~~~~~~i~~Dv-----------f~~l~~~~-------~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~ 323 (393)
T COG1092 262 LNGLDGDRHRFIVGDV-----------FKWLRKAE-------RRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLAL 323 (393)
T ss_pred hcCCCccceeeehhhH-----------HHHHHHHH-------hcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHH
Confidence 9999866666655432 22221111 145689999999983 34677899999
Q ss_pred HhccCCeEEEEecc-CCCcHHHHHHHHHh
Q 041459 171 SYAKPGAVVGISGI-LSEQLPHIINRYSE 198 (225)
Q Consensus 171 ~~LkpgG~l~~~~~-~~~~~~~~~~~~~~ 198 (225)
++|+|||+++++.. ..-....+.+....
T Consensus 324 ~iL~pgG~l~~~s~~~~~~~~~f~~~i~~ 352 (393)
T COG1092 324 RLLAPGGTLVTSSCSRHFSSDLFLEIIAR 352 (393)
T ss_pred HHcCCCCEEEEEecCCccCHHHHHHHHHH
Confidence 99999999988544 33444444444443
No 13
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.63 E-value=4.2e-15 Score=123.52 Aligned_cols=120 Identities=26% Similarity=0.359 Sum_probs=98.0
Q ss_pred CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
...+|||+|||+|.+++.+++. ...++++||+++++.+.|++|+..+++. +++.+...|...+..
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~-~ri~v~~~Di~~~~~------------- 109 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE-ERIQVIEADIKEFLK------------- 109 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch-hceeEehhhHHHhhh-------------
Confidence 4789999999999999998876 6688999999999999999999999987 678887766544421
Q ss_pred ccccccCCCCCCceeEEEeccchhH---------------------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHH
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP---------------------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINR 195 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 195 (225)
.....+||+|+||||+.. +.++++.+.++|||||.+++. ...+...++.+.
T Consensus 110 -------~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V-~r~erl~ei~~~ 181 (248)
T COG4123 110 -------ALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV-HRPERLAEIIEL 181 (248)
T ss_pred -------cccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE-ecHHHHHHHHHH
Confidence 013447999999999732 356788999999999999984 667778888888
Q ss_pred HHhh
Q 041459 196 YSEF 199 (225)
Q Consensus 196 ~~~~ 199 (225)
++.+
T Consensus 182 l~~~ 185 (248)
T COG4123 182 LKSY 185 (248)
T ss_pred HHhc
Confidence 8874
No 14
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.62 E-value=1.9e-14 Score=115.80 Aligned_cols=123 Identities=16% Similarity=0.216 Sum_probs=94.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
+.++.+|||+|||+|.+++.+++. +..+++++|+++.+++.|++++..+++. .+.+...+....
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~--~i~~~~~d~~~~------------- 93 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG--NIDIIPGEAPIE------------- 93 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CeEEEecCchhh-------------
Confidence 346789999999999999988764 5578999999999999999999877764 245544332110
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhc
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDIL 204 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 204 (225)
...+||+|+++.....+..+++.+.+.|+|||.+++..+...+..++.+.+.+. +..++
T Consensus 94 -----------~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 94 -----------LPGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELD 153 (187)
T ss_pred -----------cCcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcce
Confidence 235799999987766678889999999999999999766666777777777664 54333
No 15
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.61 E-value=2.8e-14 Score=126.69 Aligned_cols=166 Identities=16% Similarity=0.134 Sum_probs=113.6
Q ss_pred cceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
.+..+.++|+..+ +++.+..+.+.+.....++.+|||+|||+|.+++.+++ .+..+++|+|+|+.+++.|++|+..
T Consensus 221 ~G~~f~V~p~vLI---PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~ 297 (423)
T PRK14966 221 YGRRFAVNPNVLI---PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD 297 (423)
T ss_pred cCcEEEeCCCccC---CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 3456778888554 56666666665544445667999999999999998775 4677899999999999999999987
Q ss_pred cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-----------------------
Q 041459 104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN----------------------- 160 (225)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~----------------------- 160 (225)
++. ++.+...+..... .....+||+|++|||+.
T Consensus 298 ~g~---rV~fi~gDl~e~~---------------------l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG 353 (423)
T PRK14966 298 LGA---RVEFAHGSWFDTD---------------------MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDF 353 (423)
T ss_pred cCC---cEEEEEcchhccc---------------------cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCC
Confidence 763 2444443321110 00234799999999861
Q ss_pred -----HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhcc--cccCCceEEEeee
Q 041459 161 -----PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILL--SEMDDWTCVSGTK 218 (225)
Q Consensus 161 -----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~w~~~~~~k 218 (225)
.++.++..+.+.|+|||.+++ +++.++...+.+.+.+. +..++. .-.|.-+.+.+++
T Consensus 354 ~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 354 SDGLSCIRTLAQGAPDRLAEGGFLLL-EHGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred CchHHHHHHHHHHHHHhcCCCcEEEE-EECccHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence 134678888899999999877 45667777777777654 433332 2234445555543
No 16
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.61 E-value=1.3e-14 Score=121.81 Aligned_cols=115 Identities=17% Similarity=0.227 Sum_probs=87.0
Q ss_pred HHHHHHHHhhccCCCcEEEEcccccHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCC
Q 041459 46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK---FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122 (225)
Q Consensus 46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~---~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (225)
..+..++.....++.+|||+|||+|..+..+++ .+..+++|+|+|+.|++.|++++...+.. ..+.+...+....
T Consensus 44 ~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~-~~v~~~~~d~~~~- 121 (247)
T PRK15451 44 SMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-TPVDVIEGDIRDI- 121 (247)
T ss_pred HHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEeCChhhC-
Confidence 333334444456788999999999999988776 35678999999999999999998876654 3455655544333
Q ss_pred ccccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459 123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
+...+|+|+++..+++ ...+++++++.|||||.+++++..
T Consensus 122 -----------------------~~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 122 -----------------------AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred -----------------------CCCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 3345899999877654 356899999999999999998654
No 17
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.61 E-value=4.3e-14 Score=122.20 Aligned_cols=163 Identities=16% Similarity=0.178 Sum_probs=108.7
Q ss_pred ceeEEecccceecCCCCchHHHHHHHHHhhcc-CC-CcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHH
Q 041459 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLIK-GG-ELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~-~~-~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
+..+.++|+.-+ . ..++...+...+....+ .+ .+|||+|||+|.+++.+++. +..+++++|+|+.+++.|++|+.
T Consensus 101 g~~f~v~~~vli-p-r~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~ 178 (307)
T PRK11805 101 GLEFYVDERVLV-P-RSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIE 178 (307)
T ss_pred CcEEEECCCCcC-C-CCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 456777777643 1 22344454444543322 23 68999999999999998864 56789999999999999999999
Q ss_pred hcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh----------------------
Q 041459 103 LNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN---------------------- 160 (225)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~---------------------- 160 (225)
.+++. .++.+...+.... + +..+||+|++|||+.
T Consensus 179 ~~~l~-~~i~~~~~D~~~~----------l-------------~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~g 234 (307)
T PRK11805 179 RHGLE-DRVTLIESDLFAA----------L-------------PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAA 234 (307)
T ss_pred HhCCC-CcEEEEECchhhh----------C-------------CCCCccEEEECCCCCCccchhhcCHhhccCccceeeC
Confidence 88865 3455555443111 0 345799999998862
Q ss_pred ------HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhcccccCCceEEEe
Q 041459 161 ------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILLSEMDDWTCVSG 216 (225)
Q Consensus 161 ------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~ 216 (225)
.+..++..+.++|+|||.+++. +..+ ...+.+.+... +........+.|+.+..
T Consensus 235 g~dGl~~~~~i~~~a~~~L~pgG~l~~E-~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (307)
T PRK11805 235 GDDGLDLVRRILAEAPDYLTEDGVLVVE-VGNS-RVHLEEAYPDVPFTWLEFENGGDGVFLLT 295 (307)
T ss_pred CCchHHHHHHHHHHHHHhcCCCCEEEEE-ECcC-HHHHHHHHhhCCCEEEEecCCCceEEEEE
Confidence 1356788999999999999984 4433 34455555442 32334445566665554
No 18
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.61 E-value=7.6e-14 Score=119.48 Aligned_cols=144 Identities=17% Similarity=0.201 Sum_probs=100.4
Q ss_pred ceeEEecccceecCCCC-chHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHH
Q 041459 26 ATNIILNPGLAFGTGEH-ATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 26 ~~~~~~~~~~~f~~~~~-~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
+..+.++|+.-+ .+ ++...+...+.... .++.+|||+|||+|.+++.+++. +..+++|+|+|+.+++.|++|+
T Consensus 89 g~~f~v~~~vli---pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 89 GLEFYVDERVLI---PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI 165 (284)
T ss_pred CcEEEECCCCcc---CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 456777777544 23 34444444454332 34579999999999999998874 5578999999999999999999
Q ss_pred HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh---------------------
Q 041459 102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--------------------- 160 (225)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--------------------- 160 (225)
..+++. +++.+...+.... + +..+||+|++|||+.
T Consensus 166 ~~~~~~-~~i~~~~~D~~~~----------------------~-~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~ 221 (284)
T TIGR03533 166 ERHGLE-DRVTLIQSDLFAA----------------------L-PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALA 221 (284)
T ss_pred HHcCCC-CcEEEEECchhhc----------------------c-CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhc
Confidence 988875 3455555443111 0 345799999998862
Q ss_pred -------HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 161 -------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 161 -------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
.+..++..+.++|+|||.+++. ++. ....+.+.+..
T Consensus 222 gg~dGl~~~~~il~~a~~~L~~gG~l~~e-~g~-~~~~v~~~~~~ 264 (284)
T TIGR03533 222 SGEDGLDLVRRILAEAADHLNENGVLVVE-VGN-SMEALEEAYPD 264 (284)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCCEEEEE-ECc-CHHHHHHHHHh
Confidence 1356688899999999999884 433 33566665554
No 19
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=3e-14 Score=120.84 Aligned_cols=172 Identities=22% Similarity=0.257 Sum_probs=113.6
Q ss_pred eCCCCCCCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHH
Q 041459 16 PEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAI 94 (225)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l 94 (225)
+.|..+..-.+..|.=.|++.=......-++++++.|... .+.+|+|+|||.|.+++.+++ .+..+++.+|+|..++
T Consensus 118 ~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~--~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av 195 (300)
T COG2813 118 PEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLPPD--LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAV 195 (300)
T ss_pred hhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCCcc--CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHH
Confidence 3455543334455666777321122223334444433222 345999999999999999887 5678999999999999
Q ss_pred HHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--------HHHHH
Q 041459 95 KSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------LLQLA 166 (225)
Q Consensus 95 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------~~~~l 166 (225)
+.|++|+..|++++. .+...+.... -.++||+|+||||++. -.+++
T Consensus 196 ~~ar~Nl~~N~~~~~--~v~~s~~~~~------------------------v~~kfd~IisNPPfh~G~~v~~~~~~~~i 249 (300)
T COG2813 196 ESARKNLAANGVENT--EVWASNLYEP------------------------VEGKFDLIISNPPFHAGKAVVHSLAQEII 249 (300)
T ss_pred HHHHHhHHHcCCCcc--EEEEeccccc------------------------ccccccEEEeCCCccCCcchhHHHHHHHH
Confidence 999999999998752 2222221111 2348999999999864 23789
Q ss_pred HHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhhhhhc-ccccCCceEEEeee
Q 041459 167 DHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDIL-LSEMDDWTCVSGTK 218 (225)
Q Consensus 167 ~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~k 218 (225)
..+.+.|++||.+.+... ....+...+++.|..++ +.+.+.+.-+..+|
T Consensus 250 ~~A~~~L~~gGeL~iVan---~~l~y~~~L~~~Fg~v~~la~~~gf~Vl~a~k 299 (300)
T COG2813 250 AAAARHLKPGGELWIVAN---RHLPYEKKLKELFGNVEVLAKNGGFKVLRAKK 299 (300)
T ss_pred HHHHHhhccCCEEEEEEc---CCCChHHHHHHhcCCEEEEEeCCCEEEEEEec
Confidence 999999999999998755 34445555666665444 44555666555544
No 20
>PRK14967 putative methyltransferase; Provisional
Probab=99.59 E-value=6.3e-14 Score=115.90 Aligned_cols=143 Identities=28% Similarity=0.329 Sum_probs=97.1
Q ss_pred eeEEecccceecCCCCchHHHHHHHHHhh-ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 27 TNIILNPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 27 ~~~~~~~~~~f~~~~~~~~~~~~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
..+..+++..- .......+...+... ..++.+|||+|||+|.++..+++.+..+++++|+++.+++.+++|+..++
T Consensus 7 ~~~~~~~g~~~---p~~ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~ 83 (223)
T PRK14967 7 DALLRAPGVYR---PQEDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG 83 (223)
T ss_pred ceeecCCCCcC---CCCcHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC
Confidence 45566666331 122334444555432 45678999999999999999888776689999999999999999988776
Q ss_pred CCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH------------------------
Q 041459 106 IGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP------------------------ 161 (225)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~------------------------ 161 (225)
+. +.+...+.... .+.+.||+|++|+|+..
T Consensus 84 ~~---~~~~~~d~~~~-----------------------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (223)
T PRK14967 84 VD---VDVRRGDWARA-----------------------VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAV 137 (223)
T ss_pred Ce---eEEEECchhhh-----------------------ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHH
Confidence 53 33443332111 03568999999987542
Q ss_pred HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 162 LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 162 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
+..+++.+.++||+||.+++......+..+..+.++.
T Consensus 138 ~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~ 174 (223)
T PRK14967 138 LDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSE 174 (223)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHH
Confidence 3456788999999999998843333344555555543
No 21
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.59 E-value=1e-13 Score=122.58 Aligned_cols=151 Identities=15% Similarity=0.182 Sum_probs=101.7
Q ss_pred CCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCC-CcceEEEecC
Q 041459 41 EHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGP-KKMKLHLVPD 118 (225)
Q Consensus 41 ~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~-~~~~~~~~~~ 118 (225)
...-++.+++.+... .+.+|||+|||+|.+++.+++ .+..+++++|+|+.+++.|++|+..++... ..+.+...+.
T Consensus 213 LD~GtrllL~~lp~~--~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~ 290 (378)
T PRK15001 213 LDIGARFFMQHLPEN--LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA 290 (378)
T ss_pred cChHHHHHHHhCCcc--cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccc
Confidence 334455555554321 246999999999999999876 467789999999999999999998776431 2344443332
Q ss_pred CCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--------HHHHHHHHHHhccCCeEEEEeccCCCcHH
Q 041459 119 RTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------LLQLADHIVSYAKPGAVVGISGILSEQLP 190 (225)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 190 (225)
... + ...+||+|+||||++. ...++..+.+.|+|||.+++..... .
T Consensus 291 l~~----------------------~-~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~---l 344 (378)
T PRK15001 291 LSG----------------------V-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH---L 344 (378)
T ss_pred ccc----------------------C-CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecC---c
Confidence 110 0 3457999999999853 2467889999999999999974332 2
Q ss_pred HHHHHHHhhhhhhcc-cccCCceEEEeeee
Q 041459 191 HIINRYSEFLEDILL-SEMDDWTCVSGTKK 219 (225)
Q Consensus 191 ~~~~~~~~~~~~~~~-~~~~~w~~~~~~k~ 219 (225)
.+...+++.|...+. .....++-+..+|.
T Consensus 345 ~y~~~L~~~fg~~~~va~~~kf~vl~a~k~ 374 (378)
T PRK15001 345 DYFHKLKKIFGNCTTIATNNKFVVLKAVKL 374 (378)
T ss_pred CHHHHHHHHcCCceEEccCCCEEEEEEEeC
Confidence 233444445544443 34455666766663
No 22
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.59 E-value=7.9e-15 Score=120.35 Aligned_cols=109 Identities=23% Similarity=0.315 Sum_probs=86.4
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
.|++|||+|||-|.++..+|+.| .+|+|+|.++.+|+.|+..+...++. +.......+.+.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~---i~y~~~~~edl~--------------- 119 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVN---IDYRQATVEDLA--------------- 119 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhcccc---ccchhhhHHHHH---------------
Confidence 78999999999999999999998 66999999999999999998888765 222222221110
Q ss_pred cccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCcHHHH
Q 041459 138 SHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQLPHI 192 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 192 (225)
...++||+|+|.-+++| ...++..+.+++||||.+++|++......-+
T Consensus 120 -------~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~ 170 (243)
T COG2227 120 -------SAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYL 170 (243)
T ss_pred -------hcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHH
Confidence 03479999999888876 5678999999999999999998875444433
No 23
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.58 E-value=3.1e-14 Score=114.17 Aligned_cols=114 Identities=17% Similarity=0.180 Sum_probs=88.7
Q ss_pred CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
++.+|||+|||+|.+++.++.. +..+++|+|+++.+++.+++++..+++.+ +.+...+...+.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~--i~~i~~d~~~~~-------------- 105 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN--VEIVNGRAEDFQ-------------- 105 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC--eEEEecchhhcc--------------
Confidence 4889999999999999987764 45789999999999999999988887642 666665543321
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
..++||+|+++. ++++..+++.+.++|+|||.+++. .......++....+.
T Consensus 106 ---------~~~~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~-~~~~~~~~~~~~~e~ 156 (181)
T TIGR00138 106 ---------HEEQFDVITSRA-LASLNVLLELTLNLLKVGGYFLAY-KGKKYLDEIEEAKRK 156 (181)
T ss_pred ---------ccCCccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE-cCCCcHHHHHHHHHh
Confidence 356899999987 666778889999999999999885 455555555555444
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.57 E-value=5.4e-14 Score=109.37 Aligned_cols=106 Identities=28% Similarity=0.397 Sum_probs=84.5
Q ss_pred cCCCcEEEEcccccHHHHHHH-h-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAI-K-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~-~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
+++.+|||+|||+|.++..++ + .+..+++|+|+++.+++.|++++...++. ++.+...+...++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~--ni~~~~~d~~~l~~----------- 68 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD--NIEFIQGDIEDLPQ----------- 68 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST--TEEEEESBTTCGCG-----------
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc--ccceEEeehhcccc-----------
Confidence 367899999999999999988 4 35678999999999999999999888876 36677666544310
Q ss_pred ccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
.+ + +.||+|+++.++++ ...+++.+.++|+++|.+++....
T Consensus 69 --------~~-~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 69 --------EL-E-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp --------CS-S-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred --------cc-C-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 00 2 78999999987654 557899999999999999987665
No 25
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.6e-13 Score=117.16 Aligned_cols=145 Identities=25% Similarity=0.329 Sum_probs=99.6
Q ss_pred cceeEEecccceecCCCCchHHHHHHHHHhhccCCC-cEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHH
Q 041459 25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE-LFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~-~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
.+..+.++++... +++.+..+.+.+........ +|+|+|||||.+++.+++. +..+|+|+|+|+.+++.|++|+.
T Consensus 79 ~gl~~~v~~~vli---Pr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~ 155 (280)
T COG2890 79 GGLRFKVDEGVLI---PRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAE 155 (280)
T ss_pred cceeeeeCCCcee---cCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHH
Confidence 3455566666433 44555544444322222222 7999999999999998875 55689999999999999999999
Q ss_pred hcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH---------------------
Q 041459 103 LNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------------------- 161 (225)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------------------- 161 (225)
.+++. + +.....+.+.. -.++||+|++||||-+
T Consensus 156 ~~~l~--~--~~~~~~dlf~~----------------------~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~ 209 (280)
T COG2890 156 RNGLV--R--VLVVQSDLFEP----------------------LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVG 209 (280)
T ss_pred HcCCc--c--EEEEeeecccc----------------------cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHcc
Confidence 99973 2 23322333311 2348999999999611
Q ss_pred -------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 162 -------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 162 -------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
+..++..+.++|+|||.+++. ....+...+.+.+...
T Consensus 210 g~dGl~~~~~i~~~a~~~l~~~g~l~le-~g~~q~~~v~~~~~~~ 253 (280)
T COG2890 210 GGDGLEVYRRILGEAPDILKPGGVLILE-IGLTQGEAVKALFEDT 253 (280)
T ss_pred CccHHHHHHHHHHhhHHHcCCCcEEEEE-ECCCcHHHHHHHHHhc
Confidence 356788999999999998884 5555666666666654
No 26
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.57 E-value=4.1e-14 Score=100.12 Aligned_cols=92 Identities=26% Similarity=0.382 Sum_probs=73.3
Q ss_pred EEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccccccc
Q 041459 63 LDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIR 142 (225)
Q Consensus 63 lDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (225)
||+|||+|..+..+++.+..+++++|+++.+++.++++....+ +.+...+...++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~-----~~~~~~d~~~l~~------------------- 56 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG-----VSFRQGDAEDLPF------------------- 56 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST-----EEEEESBTTSSSS-------------------
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC-----chheeehHHhCcc-------------------
Confidence 7999999999999998877889999999999999998875443 3366666665543
Q ss_pred CCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEE
Q 041459 143 GISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 143 ~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~ 181 (225)
++++||+|+++..+++ ...+++++.+.|||||++++
T Consensus 57 ---~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 57 ---PDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ----TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---ccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 6789999999877654 57789999999999999985
No 27
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.57 E-value=5.6e-14 Score=133.70 Aligned_cols=141 Identities=17% Similarity=0.208 Sum_probs=107.1
Q ss_pred CcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
+.+..+.++......||.+..++....++.... ++++|||+|||+|.+++.+++.|+.+|+++|+|+.+++.|++|+..
T Consensus 505 e~g~~f~v~~~~~~~tG~flDqr~~R~~~~~~~-~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ 583 (702)
T PRK11783 505 EYGAKLLVNLTDYLDTGLFLDHRPTRRMIGQMA-KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL 583 (702)
T ss_pred ECCEEEEEEcCCCCcceECHHHHHHHHHHHHhc-CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 455666666655557777777777777776655 4889999999999999999998888899999999999999999999
Q ss_pred cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh--------------HHHHHHHHH
Q 041459 104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--------------PLLQLADHI 169 (225)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--------------~~~~~l~~~ 169 (225)
|++...++.+...+...+ + .. ...+||+|++|||+. .+..++..+
T Consensus 584 ng~~~~~v~~i~~D~~~~-----------l--------~~--~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a 642 (702)
T PRK11783 584 NGLSGRQHRLIQADCLAW-----------L--------KE--AREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDA 642 (702)
T ss_pred hCCCccceEEEEccHHHH-----------H--------HH--cCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHH
Confidence 988633455555443211 0 00 145799999999851 245678889
Q ss_pred HHhccCCeEEEEeccCC
Q 041459 170 VSYAKPGAVVGISGILS 186 (225)
Q Consensus 170 ~~~LkpgG~l~~~~~~~ 186 (225)
.++|+|||.+++++...
T Consensus 643 ~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 643 KRLLRPGGTLYFSNNKR 659 (702)
T ss_pred HHHcCCCCEEEEEeCCc
Confidence 99999999998865543
No 28
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.57 E-value=4.7e-14 Score=120.22 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=113.3
Q ss_pred CCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 22 PDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 22 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
..+.+..+.++....-.||.+..++....++.... ++++|||++|-||.++++++..|+.+++.||.|..++++|++|+
T Consensus 88 v~E~gl~f~v~l~~gqktGlFlDqR~nR~~v~~~~-~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~ 166 (286)
T PF10672_consen 88 VEENGLKFRVDLTDGQKTGLFLDQRENRKWVRKYA-KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENA 166 (286)
T ss_dssp EEETTEEEEEESSSSSSTSS-GGGHHHHHHHHHHC-TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHH
T ss_pred EEECCEEEEEEcCCCCcceEcHHHHhhHHHHHHHc-CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence 34667777888877778999999999999987765 48999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch---------hHHHHHHHHHHHh
Q 041459 102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL---------NPLLQLADHIVSY 172 (225)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~---------~~~~~~l~~~~~~ 172 (225)
..|+++.+.+++...+. + .++ ..++..++||+||++||- ..+.+++..+.++
T Consensus 167 ~lNg~~~~~~~~~~~Dv--f---------~~l--------~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~l 227 (286)
T PF10672_consen 167 ALNGLDLDRHRFIQGDV--F---------KFL--------KRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKL 227 (286)
T ss_dssp HHTT-CCTCEEEEES-H--H---------HHH--------HHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHT
T ss_pred HHcCCCccceEEEecCH--H---------HHH--------HHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99998766666655432 1 111 111135689999999983 3467789999999
Q ss_pred ccCCeEEEEecc-CCCcHHHHHHHHHh
Q 041459 173 AKPGAVVGISGI-LSEQLPHIINRYSE 198 (225)
Q Consensus 173 LkpgG~l~~~~~-~~~~~~~~~~~~~~ 198 (225)
|+|||.+++++. ..-....+.+.+..
T Consensus 228 l~~gG~l~~~scs~~i~~~~l~~~~~~ 254 (286)
T PF10672_consen 228 LKPGGLLLTCSCSHHISPDFLLEAVAE 254 (286)
T ss_dssp EEEEEEEEEEE--TTS-HHHHHHHHHH
T ss_pred cCCCCEEEEEcCCcccCHHHHHHHHHH
Confidence 999999876433 33334445554443
No 29
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.56 E-value=2.4e-13 Score=114.49 Aligned_cols=146 Identities=21% Similarity=0.247 Sum_probs=99.1
Q ss_pred cceeEEecccceecCCCCchHHHHHH-HHHhhc--cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHH
Q 041459 25 QATNIILNPGLAFGTGEHATTKLCLL-LLQSLI--KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQN 100 (225)
Q Consensus 25 ~~~~~~~~~~~~f~~~~~~~~~~~~~-~L~~~~--~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~ 100 (225)
.+..+.++|+..+ +++.+..+.+ .+.... ..+.+|||+|||+|.+++.+++ .+..+++++|+|+.+++.|++|
T Consensus 53 ~g~~~~v~~~vf~---pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N 129 (251)
T TIGR03704 53 CGLRIAVDPGVFV---PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN 129 (251)
T ss_pred cCeEEEECCCCcC---CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 3466788887543 3333334333 333221 1235899999999999999876 4556899999999999999999
Q ss_pred HHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-------------------
Q 041459 101 AALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP------------------- 161 (225)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~------------------- 161 (225)
+..++. .+...+.... .... ..++||+|++|||+..
T Consensus 130 ~~~~~~-----~~~~~D~~~~-------l~~~-------------~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~a 184 (251)
T TIGR03704 130 LADAGG-----TVHEGDLYDA-------LPTA-------------LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVA 184 (251)
T ss_pred HHHcCC-----EEEEeechhh-------cchh-------------cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHH
Confidence 987652 2333332111 0000 1347999999998631
Q ss_pred ----------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 162 ----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 162 ----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
++.++..+.++|||||.+++. +..++..++...+++.
T Consensus 185 l~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~-~~~~~~~~v~~~l~~~ 231 (251)
T TIGR03704 185 LDGGADGLDVLRRVAAGAPDWLAPGGHLLVE-TSERQAPLAVEAFARA 231 (251)
T ss_pred hcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE-ECcchHHHHHHHHHHC
Confidence 346788888999999999984 5566777787777764
No 30
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=1.2e-13 Score=116.72 Aligned_cols=107 Identities=22% Similarity=0.337 Sum_probs=91.5
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+++|++|||+|||-|.+++++++....+|+|+++|+++.+.+++.+...++. +++++...+-..+
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~-~~v~v~l~d~rd~-------------- 134 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE-DNVEVRLQDYRDF-------------- 134 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC-cccEEEecccccc--------------
Confidence 6799999999999999999999875677999999999999999999999987 5677776665544
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSEQ 188 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~ 188 (225)
.++||-|++-.++++ +..+++.+.+.|+|||.+++.++....
T Consensus 135 -----------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 135 -----------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred -----------ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 345999999888766 678999999999999999998776543
No 31
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.56 E-value=1.3e-13 Score=116.73 Aligned_cols=111 Identities=21% Similarity=0.246 Sum_probs=84.4
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcC-CCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNN-IGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
+.++.+|||+|||+|.++..+++. + ..+++|+|+|+.|++.|+++..... .....+.+...+...++.
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~--------- 141 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF--------- 141 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC---------
Confidence 346889999999999999988764 3 4689999999999999987653211 011245666666655432
Q ss_pred ccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQ 188 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~ 188 (225)
++++||+|+++..+++ ...++.++.+.|||||.+++.++....
T Consensus 142 -------------~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 142 -------------DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred -------------CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 5678999999877654 567899999999999999998776543
No 32
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.56 E-value=1.4e-14 Score=107.38 Aligned_cols=103 Identities=30% Similarity=0.511 Sum_probs=80.3
Q ss_pred CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459 59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS 138 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (225)
|.+|||+|||+|.+++.+++.+..+++|+|+++.+++.|+.++..+++. +++.+...+.... ....
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~-------~~~~------ 66 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD-DRVEVIVGDARDL-------PEPL------ 66 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT-TTEEEEESHHHHH-------HHTC------
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC-ceEEEEECchhhc-------hhhc------
Confidence 5689999999999999988877788999999999999999999988875 3466666543221 1011
Q ss_pred ccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEe
Q 041459 139 HEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 139 ~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~ 182 (225)
...+||+|++|+|+.. +..+++.+.++|||||.+++.
T Consensus 67 -------~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 67 -------PDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp -------TTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -------cCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 5688999999999853 357799999999999999874
No 33
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.56 E-value=1.3e-13 Score=115.08 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=82.1
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc---CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF---GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~---~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
..++.+|||+|||+|.++..+++. +..+++|+|+++.|++.|++++...+.. .++.+...+....
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~-~~v~~~~~d~~~~----------- 118 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-IPVEILCNDIRHV----------- 118 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECChhhC-----------
Confidence 456789999999999999988763 4678999999999999999988755433 2455655554433
Q ss_pred ccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCC
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (225)
+...+|+|+++..+++ ...+++++.+.|||||.+++++...
T Consensus 119 -------------~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 119 -------------EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred -------------CCCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 2345899998877654 3568999999999999999987654
No 34
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.56 E-value=8.3e-14 Score=114.81 Aligned_cols=126 Identities=13% Similarity=0.206 Sum_probs=102.9
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-C------CCeEEEEeCCHHHHHHHHHHHHhcCCCCC-cceEEEecCCCCCcccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-G------AAMSVGVDIDPQAIKSAHQNAALNNIGPK-KMKLHLVPDRTFPASMNER 128 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~------~~~v~~vDi~~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 128 (225)
.+++++||++||||-++.-+.+. + ..+|+.+|++|.||+.++++....++..+ .+.+..++++.+|+
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF----- 173 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF----- 173 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC-----
Confidence 36789999999999999887653 2 27899999999999999999877776643 36677778887765
Q ss_pred ccccccccccccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhc
Q 041459 129 VDGIVEDLSSHEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDIL 204 (225)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 204 (225)
++..||..++.+.+ .++.+.+++++|.|||||++++.++...+.+.+...|..+ +..+.
T Consensus 174 -----------------dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~Vlp 236 (296)
T KOG1540|consen 174 -----------------DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLP 236 (296)
T ss_pred -----------------CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhc
Confidence 78899998886654 4678899999999999999999888887878888888887 55433
No 35
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.56 E-value=7.1e-14 Score=112.62 Aligned_cols=112 Identities=24% Similarity=0.250 Sum_probs=86.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
++++.+|||+|||+|.+++.+++ .+..+++++|+++.+++.|++++..+++++ +++...+...+.
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~--i~~~~~d~~~~~------------ 108 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN--VTVVHGRAEEFG------------ 108 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC--EEEEeccHhhCC------------
Confidence 44589999999999999998775 566789999999999999999999888753 666655543321
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHH
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIIN 194 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 194 (225)
..++||+|+++. ...+..+++.++++|||||.+++.. .......+..
T Consensus 109 -----------~~~~fDlV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~-~~~~~~~l~~ 155 (187)
T PRK00107 109 -----------QEEKFDVVTSRA-VASLSDLVELCLPLLKPGGRFLALK-GRDPEEEIAE 155 (187)
T ss_pred -----------CCCCccEEEEcc-ccCHHHHHHHHHHhcCCCeEEEEEe-CCChHHHHHH
Confidence 345799999976 4556788999999999999999863 3334444433
No 36
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.55 E-value=3.1e-13 Score=111.90 Aligned_cols=113 Identities=18% Similarity=0.246 Sum_probs=85.5
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|+++....++. ++.+...+....+.
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~---------- 110 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH--NVELVHGNAMELPF---------- 110 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC--ceEEEEechhcCCC----------
Confidence 446889999999999999988864 3468999999999999999998766553 35555554433311
Q ss_pred cccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCcHHHH
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQLPHI 192 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 192 (225)
+.++||+|+++..+++ +..+++++.+.|+|||.+++.+....+...+
T Consensus 111 ------------~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~ 160 (231)
T TIGR02752 111 ------------DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGF 160 (231)
T ss_pred ------------CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHH
Confidence 4578999999876544 5678999999999999999876654444333
No 37
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.55 E-value=1.3e-13 Score=111.94 Aligned_cols=98 Identities=20% Similarity=0.256 Sum_probs=77.4
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.++++....++.+ +.....+...++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~~~--v~~~~~d~~~~~--------------- 91 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENLDN--LHTAVVDLNNLT--------------- 91 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCCc--ceEEecChhhCC---------------
Confidence 56899999999999999999875 479999999999999999988777643 444444433221
Q ss_pred cccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEE
Q 041459 138 SHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~ 181 (225)
..+.||+|+++..+++ ...++..+.++|||||.+++
T Consensus 92 --------~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 92 --------FDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred --------cCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 2457999999877643 46789999999999999654
No 38
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.55 E-value=6e-14 Score=119.36 Aligned_cols=131 Identities=20% Similarity=0.289 Sum_probs=85.8
Q ss_pred EecccceecCCCCchH--------HHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Q 041459 30 ILNPGLAFGTGEHATT--------KLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 30 ~~~~~~~f~~~~~~~~--------~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~ 99 (225)
.+++.|.|+.+.++.. ...++.+.+. +++|++|||+|||.|.+++.+++....+|+|+.+|++..+.|++
T Consensus 24 ~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~ 103 (273)
T PF02353_consen 24 FLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARE 103 (273)
T ss_dssp TS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHH
T ss_pred hcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHH
Confidence 3567777766555332 2222222222 67899999999999999999988633469999999999999999
Q ss_pred HHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhcc
Q 041459 100 NAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAK 174 (225)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~Lk 174 (225)
.+...++. +.+.+...+-..+ +.+||.|++-.++++ +..+++.+.++||
T Consensus 104 ~~~~~gl~-~~v~v~~~D~~~~-------------------------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk 157 (273)
T PF02353_consen 104 RIREAGLE-DRVEVRLQDYRDL-------------------------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK 157 (273)
T ss_dssp HHHCSTSS-STEEEEES-GGG----------------------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE
T ss_pred HHHhcCCC-CceEEEEeecccc-------------------------CCCCCEEEEEechhhcChhHHHHHHHHHHHhcC
Confidence 99988887 5667766543322 348999999777765 5788999999999
Q ss_pred CCeEEEEeccCC
Q 041459 175 PGAVVGISGILS 186 (225)
Q Consensus 175 pgG~l~~~~~~~ 186 (225)
|||.+++..+..
T Consensus 158 pgG~~~lq~i~~ 169 (273)
T PF02353_consen 158 PGGRLVLQTITH 169 (273)
T ss_dssp TTEEEEEEEEEE
T ss_pred CCcEEEEEeccc
Confidence 999999866543
No 39
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.55 E-value=4.7e-13 Score=114.59 Aligned_cols=144 Identities=24% Similarity=0.249 Sum_probs=100.1
Q ss_pred ceeEEecccceecCCCCchHHHH-HHHHHhhc-cCC-CcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHH
Q 041459 26 ATNIILNPGLAFGTGEHATTKLC-LLLLQSLI-KGG-ELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~-~~~L~~~~-~~~-~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
+..+.++++... +++.+..+ ...+.... .++ .+|||+|||+|.+++.++.. +..+++|+|+++.+++.|++|+
T Consensus 82 g~~f~v~~~vli---Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~ 158 (284)
T TIGR00536 82 GLEFFVNEHVLI---PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA 158 (284)
T ss_pred CeEEEECCCCcC---CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 456777777433 34433333 33443332 223 68999999999999998874 4578999999999999999999
Q ss_pred HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh---------------------
Q 041459 102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--------------------- 160 (225)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--------------------- 160 (225)
..+++. .++.+...+.... + ...+||+|++|||+.
T Consensus 159 ~~~~~~-~~v~~~~~d~~~~----------~-------------~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~ 214 (284)
T TIGR00536 159 EKNQLE-HRVEFIQSNLFEP----------L-------------AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALV 214 (284)
T ss_pred HHcCCC-CcEEEEECchhcc----------C-------------cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhc
Confidence 888764 2355544432110 0 234799999998852
Q ss_pred -------HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHH
Q 041459 161 -------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS 197 (225)
Q Consensus 161 -------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 197 (225)
.+..++..+.++|+|||.+++ +++.++...+.+.+.
T Consensus 215 gg~dgl~~~~~ii~~a~~~L~~gG~l~~-e~g~~q~~~~~~~~~ 257 (284)
T TIGR00536 215 GGDDGLNILRQIIELAPDYLKPNGFLVC-EIGNWQQKSLKELLR 257 (284)
T ss_pred CCCcHHHHHHHHHHHHHHhccCCCEEEE-EECccHHHHHHHHHH
Confidence 245678899999999999987 456666667766665
No 40
>PLN02244 tocopherol O-methyltransferase
Probab=99.54 E-value=1.5e-13 Score=120.46 Aligned_cols=105 Identities=19% Similarity=0.202 Sum_probs=84.7
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++....+++|+|+++.+++.|+++....++. +++.+...+....+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~-~~v~~~~~D~~~~~~------------- 182 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLS-DKVSFQVADALNQPF------------- 182 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEcCcccCCC-------------
Confidence 467899999999999999988754567999999999999999988877764 346666666544422
Q ss_pred ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+++.||+|++...+++ ...++.++.++|||||.+++.++
T Consensus 183 ---------~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 183 ---------EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred ---------CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5678999999777655 45789999999999999998654
No 41
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.54 E-value=3.1e-13 Score=113.42 Aligned_cols=110 Identities=20% Similarity=0.306 Sum_probs=85.3
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||+|.++..+++.+ .+++++|+|+.+++.|+++... ..+...+.+.++.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~-------~~~~~~d~~~~~~-------------- 99 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAA-------DHYLAGDIESLPL-------------- 99 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCC-------CCEEEcCcccCcC--------------
Confidence 46799999999999998887765 5799999999999999876431 1234444433321
Q ss_pred cccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHH
Q 041459 138 SHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS 197 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 197 (225)
.+++||+|+++.++++ +..++.++.+.|||||.++++.+......++.+.+.
T Consensus 100 --------~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~ 154 (251)
T PRK10258 100 --------ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQ 154 (251)
T ss_pred --------CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHH
Confidence 4568999999988754 567899999999999999999888777777666554
No 42
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.54 E-value=1e-13 Score=125.58 Aligned_cols=158 Identities=14% Similarity=0.052 Sum_probs=111.0
Q ss_pred cceeEEecccceecCCCCchHHHHHHHHHhh-ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 25 QATNIILNPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
.+..+.+.|+..|......+..+...++... ..++.+|||+|||+|.+++.+++.. .+++|+|+|+.+++.|++|+..
T Consensus 263 ~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~ 341 (443)
T PRK13168 263 FGLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARR 341 (443)
T ss_pred CCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHH
Confidence 3566777777666655444444444444333 3467899999999999999988875 6799999999999999999998
Q ss_pred cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+++.+ +.+...+.... .... .....+||+|++|||.....+.++.+.+ ++|++++|+||
T Consensus 342 ~~~~~--v~~~~~d~~~~-------l~~~-----------~~~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 342 NGLDN--VTFYHANLEED-------FTDQ-----------PWALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred cCCCc--eEEEEeChHHh-------hhhh-----------hhhcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEEe
Confidence 88753 56665554221 0000 0024579999999998766677766655 69999999999
Q ss_pred cCCCcHHHHHHHHHhhhhhhc
Q 041459 184 ILSEQLPHIINRYSEFLEDIL 204 (225)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~ 204 (225)
....-..++.......|....
T Consensus 401 np~tlaRDl~~L~~~gY~l~~ 421 (443)
T PRK13168 401 NPATLARDAGVLVEAGYRLKR 421 (443)
T ss_pred ChHHhhccHHHHhhCCcEEEE
Confidence 887777777666554443333
No 43
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.53 E-value=1.6e-14 Score=119.46 Aligned_cols=101 Identities=21% Similarity=0.347 Sum_probs=81.0
Q ss_pred CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCc----ceEEEecCCCCCcccccccccccc
Q 041459 59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKK----MKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
|++|||+|||+|.++..|+++| +.|+|+|.++.+++.|+......+..+.. +++...+.+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~-------------- 154 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG-------------- 154 (282)
T ss_pred CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh--------------
Confidence 4789999999999999999998 55999999999999999987666655432 2233333332
Q ss_pred ccccccccCCCCCCceeEEEeccchhHH---HHHHHHHHHhccCCeEEEEeccC
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
..+.||.|+|...++|. .+++..+.+.|||||.++++++.
T Consensus 155 -----------~~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 155 -----------LTGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred -----------cccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 24569999999998874 67899999999999999997664
No 44
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.53 E-value=1.6e-13 Score=111.31 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=75.6
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.+++++..+++. +.....+....+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~---v~~~~~d~~~~~--------------- 90 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENLP---LRTDAYDINAAA--------------- 90 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCC---ceeEeccchhcc---------------
Confidence 56799999999999999999876 46999999999999999888766653 334333332221
Q ss_pred cccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEe
Q 041459 138 SHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~ 182 (225)
..++||+|+++.++++ ...+++.+.++|||||.+++.
T Consensus 91 --------~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 91 --------LNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred --------ccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2357999999877643 457899999999999985553
No 45
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.52 E-value=1.1e-13 Score=112.81 Aligned_cols=122 Identities=11% Similarity=0.101 Sum_probs=90.8
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC-CCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 133 (225)
..++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+++. .+.+...+. +.++
T Consensus 38 ~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~--~v~~~~~d~~~~l~----------- 104 (202)
T PRK00121 38 GNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT--NLRLLCGDAVEVLL----------- 104 (202)
T ss_pred CCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC--CEEEEecCHHHHHH-----------
Confidence 336789999999999999988764 5568999999999999999998877764 355555443 2210
Q ss_pred cccccccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
...+.+.||+|+++++..+ ...+++.+.+.|||||.+++++........+.+.+++.
T Consensus 105 ---------~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 172 (202)
T PRK00121 105 ---------DMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAE 172 (202)
T ss_pred ---------HHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhC
Confidence 0014567999999765321 35689999999999999999876666666666666654
No 46
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.52 E-value=2.7e-13 Score=116.22 Aligned_cols=125 Identities=21% Similarity=0.270 Sum_probs=88.6
Q ss_pred EEecccceecCCC--CchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 041459 29 IILNPGLAFGTGE--HATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI 106 (225)
Q Consensus 29 ~~~~~~~~f~~~~--~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~ 106 (225)
+-..|...|.... ..+...+...+.. . ++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.+++++..+++
T Consensus 91 fy~~~~~~f~~~~~~~~~~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l 167 (287)
T PRK12335 91 FYCKPEDYFHKKYNLTATHSEVLEAVQT-V-KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKENL 167 (287)
T ss_pred EEEcchhhHhhhhccccccHHHHHHhhc-c-CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCC
Confidence 3446665554332 2334444444422 2 45699999999999999999876 4799999999999999999887776
Q ss_pred CCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEE
Q 041459 107 GPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~ 181 (225)
. +.....+..... ..++||+|+++..++ ....++..+.++|+|||++++
T Consensus 168 ~---v~~~~~D~~~~~-----------------------~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 168 N---IRTGLYDINSAS-----------------------IQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred c---eEEEEechhccc-----------------------ccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3 444444433221 256799999987764 356789999999999999665
Q ss_pred e
Q 041459 182 S 182 (225)
Q Consensus 182 ~ 182 (225)
.
T Consensus 222 v 222 (287)
T PRK12335 222 V 222 (287)
T ss_pred E
Confidence 3
No 47
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.51 E-value=8.6e-13 Score=98.16 Aligned_cols=104 Identities=17% Similarity=0.244 Sum_probs=81.0
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|+|+|||+|.++..+++. +..+++++|+++.+++.+++++..+++.+ +.+...+......
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~------------ 83 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSN--IVIVEGDAPEALE------------ 83 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCc--eEEEeccccccCh------------
Confidence 45789999999999999998874 56789999999999999999988776542 4444433321100
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
....+||+|++.........+++.+.+.|||||.++++.
T Consensus 84 ---------~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 84 ---------DSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ---------hhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 023589999998777777889999999999999999853
No 48
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.51 E-value=6.4e-13 Score=122.09 Aligned_cols=116 Identities=22% Similarity=0.277 Sum_probs=87.2
Q ss_pred CCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 59 GELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
+.+|||+|||+|.+++.+++ .+..+++++|+|+.+++.|++|+..+++. +++.+...+.... .
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~-~~v~~~~~D~~~~----------~----- 202 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT-DRIQIIHSNWFEN----------I----- 202 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc-cceeeeecchhhh----------C-----
Confidence 46899999999999998775 56778999999999999999999888765 2344444332110 0
Q ss_pred cccccCCCCCCceeEEEeccchhH-----------------------------HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459 138 SHEIRGISETEKYDVVIANILLNP-----------------------------LLQLADHIVSYAKPGAVVGISGILSEQ 188 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~-----------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~ 188 (225)
..++||+|++|||+-. +..++..+.++|+|||.+++ +++.++
T Consensus 203 --------~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~~q 273 (506)
T PRK01544 203 --------EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGFKQ 273 (506)
T ss_pred --------cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECCch
Confidence 3457999999998521 34567888999999999988 466667
Q ss_pred HHHHHHHHHhh
Q 041459 189 LPHIINRYSEF 199 (225)
Q Consensus 189 ~~~~~~~~~~~ 199 (225)
...+.+.+...
T Consensus 274 ~~~v~~~~~~~ 284 (506)
T PRK01544 274 EEAVTQIFLDH 284 (506)
T ss_pred HHHHHHHHHhc
Confidence 77777766653
No 49
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.50 E-value=7.9e-13 Score=110.51 Aligned_cols=121 Identities=26% Similarity=0.297 Sum_probs=88.5
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..+.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+++. .+.+...+....
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~-------------- 149 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD--NVTFLQSDWFEP-------------- 149 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEECchhcc--------------
Confidence 34569999999999999998874 5668999999999999999999887764 244544443211
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----------------------------HHHHHHHHHHhccCCeEEEEeccCC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----------------------------LLQLADHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----------------------------~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (225)
.+.++||+|++|+|+.. +..++..+.++|+|||.+++. ...
T Consensus 150 ---------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~-~~~ 219 (251)
T TIGR03534 150 ---------LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE-IGY 219 (251)
T ss_pred ---------CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE-ECc
Confidence 04568999999998642 135678899999999999885 334
Q ss_pred CcHHHHHHHHHhh-hhhh
Q 041459 187 EQLPHIINRYSEF-LEDI 203 (225)
Q Consensus 187 ~~~~~~~~~~~~~-~~~~ 203 (225)
.+..++.+.+.+. |..+
T Consensus 220 ~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 220 DQGEAVRALFEAAGFADV 237 (251)
T ss_pred cHHHHHHHHHHhCCCCce
Confidence 4555566666553 4433
No 50
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.50 E-value=9.6e-13 Score=104.51 Aligned_cols=119 Identities=15% Similarity=0.205 Sum_probs=98.2
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
++++++++|+|||||.+++.++.. +..+++++|.++++++..++|....++++ +.+..+++...
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n--~~vv~g~Ap~~------------- 96 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN--LEVVEGDAPEA------------- 96 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc--EEEEeccchHh-------------
Confidence 668999999999999999987753 67889999999999999999999999764 55555544221
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
+.+...+|.||+... ..+..+++.+...|||||.+++..+..+......+.+++.
T Consensus 97 ---------L~~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~ 151 (187)
T COG2242 97 ---------LPDLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQL 151 (187)
T ss_pred ---------hcCCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHc
Confidence 002237999999887 7789999999999999999999888888888888887765
No 51
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.50 E-value=3.3e-13 Score=113.69 Aligned_cols=109 Identities=19% Similarity=0.269 Sum_probs=82.7
Q ss_pred HHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccc
Q 041459 51 LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVD 130 (225)
Q Consensus 51 ~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
++.....++.+|||+|||+|.++..+++.+ .+++++|+++.+++.|+++....++. .++.+...+...+.
T Consensus 37 ~l~~l~~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~-~~v~~~~~d~~~l~-------- 106 (255)
T PRK11036 37 LLAELPPRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVS-DNMQFIHCAAQDIA-------- 106 (255)
T ss_pred HHHhcCCCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCc-cceEEEEcCHHHHh--------
Confidence 333333457899999999999999998875 56999999999999999998877754 23455444332220
Q ss_pred ccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEe
Q 041459 131 GIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.. ..++||+|+++.++++ ...++..+.++|||||.+++.
T Consensus 107 ~~-------------~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 107 QH-------------LETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred hh-------------cCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 00 3568999999888765 457899999999999999875
No 52
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.49 E-value=4.8e-13 Score=113.36 Aligned_cols=105 Identities=16% Similarity=0.133 Sum_probs=79.4
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+.++.+|||+|||+|..+..+++....+++|+|+++.+++.|+++... ...+.+...+....+.
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~----~~~i~~~~~D~~~~~~------------ 113 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD----KNKIEFEANDILKKDF------------ 113 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc----CCceEEEECCcccCCC------------
Confidence 457889999999999999888764445799999999999999987543 1235555554432211
Q ss_pred cccccccCCCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEEeccCC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (225)
++++||+|++...+. ....+++++.++|||||.++++++..
T Consensus 114 ----------~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 114 ----------PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred ----------CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 467899999965432 45678999999999999999987643
No 53
>PRK14968 putative methyltransferase; Provisional
Probab=99.49 E-value=1.7e-12 Score=103.77 Aligned_cols=119 Identities=30% Similarity=0.407 Sum_probs=86.9
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++..++..+..+.+...+....
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--------------- 85 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--------------- 85 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc---------------
Confidence 46789999999999999998877 46799999999999999999987776532234433322110
Q ss_pred ccccccCCCCCCceeEEEeccchhH------------------------HHHHHHHHHHhccCCeEEEEeccCCCcHHHH
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP------------------------LLQLADHIVSYAKPGAVVGISGILSEQLPHI 192 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 192 (225)
+ ....||+|++|+|+.+ +..+++++.++|||||.+++..........+
T Consensus 86 -------~-~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l 157 (188)
T PRK14968 86 -------F-RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEV 157 (188)
T ss_pred -------c-cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHH
Confidence 0 2347999999987632 3457899999999999988754444445666
Q ss_pred HHHHHhh
Q 041459 193 INRYSEF 199 (225)
Q Consensus 193 ~~~~~~~ 199 (225)
.+.+.+.
T Consensus 158 ~~~~~~~ 164 (188)
T PRK14968 158 LEYLEKL 164 (188)
T ss_pred HHHHHHC
Confidence 6666654
No 54
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.49 E-value=2.1e-13 Score=118.42 Aligned_cols=104 Identities=21% Similarity=0.364 Sum_probs=81.1
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||+|.++..+++.+ .+++|+|.++.+++.|+.+....+.. ..+.+...+.+.++.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~-~~i~~~~~dae~l~~-------------- 194 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVT-STIEYLCTTAEKLAD-------------- 194 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcc-cceeEEecCHHHhhh--------------
Confidence 46799999999999999888765 46999999999999999876554432 245565555433311
Q ss_pred cccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459 138 SHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
..++||+|++..++++ ...++..+.++|||||.++++.+.
T Consensus 195 --------~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 195 --------EGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred --------ccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 4568999999887765 467899999999999999997653
No 55
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.47 E-value=6.9e-12 Score=106.41 Aligned_cols=144 Identities=22% Similarity=0.294 Sum_probs=95.4
Q ss_pred eeEEecccceecCCCCchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 27 TNIILNPGLAFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 27 ~~~~~~~~~~f~~~~~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
..+.++++... .++.+..+.+.+... ..++.+|||+|||+|.+++.++.. +..+++++|+++.+++.|++++.
T Consensus 78 ~~~~~~~~~li---pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~- 153 (275)
T PRK09328 78 LDFKVSPGVLI---PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK- 153 (275)
T ss_pred cEEEECCCcee---CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-
Confidence 34555555322 334444444443322 335789999999999999998874 56789999999999999999987
Q ss_pred cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH----------------------
Q 041459 104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---------------------- 161 (225)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---------------------- 161 (225)
+... ..+.+...+.... . ..++||+|++|+|+..
T Consensus 154 ~~~~-~~i~~~~~d~~~~----------------------~-~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~ 209 (275)
T PRK09328 154 HGLG-ARVEFLQGDWFEP----------------------L-PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFG 209 (275)
T ss_pred hCCC-CcEEEEEccccCc----------------------C-CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcC
Confidence 2222 2344544433111 0 2468999999988631
Q ss_pred -------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 162 -------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 162 -------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
+..++..+.++|+|||.+++. +.......+.+.+...
T Consensus 210 g~~g~~~~~~~~~~~~~~Lk~gG~l~~e-~g~~~~~~~~~~l~~~ 253 (275)
T PRK09328 210 GEDGLDFYRRIIEQAPRYLKPGGWLLLE-IGYDQGEAVRALLAAA 253 (275)
T ss_pred CCCHHHHHHHHHHHHHHhcccCCEEEEE-ECchHHHHHHHHHHhC
Confidence 245678888999999999984 4444555666666543
No 56
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.46 E-value=1.8e-12 Score=105.22 Aligned_cols=121 Identities=21% Similarity=0.245 Sum_probs=90.1
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+.++.+|||+|||+|.+++.+++. +..+++++|+++.+++.|++++..+++. +.+.+...+..... .
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-~~v~~~~~d~~~~l-------~--- 106 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-NNIVLIKGEAPEIL-------F--- 106 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CCeEEEEechhhhH-------h---
Confidence 557899999999999999988763 3468999999999999999999887753 33555444332110 0
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
. ....||.|+++.....+..+++.+.+.|||||.+++.....+...+....+++
T Consensus 107 ---------~--~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 160 (198)
T PRK00377 107 ---------T--INEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALEN 160 (198)
T ss_pred ---------h--cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHH
Confidence 0 23579999997766667888999999999999998855545555666666654
No 57
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.46 E-value=9.7e-13 Score=105.94 Aligned_cols=100 Identities=21% Similarity=0.304 Sum_probs=76.9
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.++||+|||.|..++++++.|.. |+++|+|+.+++.+++.+...+++ ++....+.+...
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~-VtAvD~s~~al~~l~~~a~~~~l~---i~~~~~Dl~~~~--------------- 90 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFD-VTAVDISPVALEKLQRLAEEEGLD---IRTRVADLNDFD--------------- 90 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-E-EEEEESSHHHHHHHHHHHHHTT-T---EEEEE-BGCCBS---------------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHhhcCce---eEEEEecchhcc---------------
Confidence 4679999999999999999999876 999999999999998888777765 566666654442
Q ss_pred cccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459 138 SHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
..+.||+|++...+.+ ...+++.+...++|||++++.++
T Consensus 91 --------~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 91 --------FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp ---------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred --------ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 3467999998655443 45688999999999999887544
No 58
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.46 E-value=2e-12 Score=112.96 Aligned_cols=111 Identities=19% Similarity=0.159 Sum_probs=85.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.+++.+|||+|||||++++.++..+ .+++|+|+++.|++.|+.|+...++.+ +.+...+...++.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~--i~~~~~D~~~l~~------------ 244 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIED--FFVKRGDATKLPL------------ 244 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCC--CeEEecchhcCCc------------
Confidence 4578899999999999998877765 569999999999999999998888763 5555555443321
Q ss_pred cccccccCCCCCCceeEEEeccchhH------------HHHHHHHHHHhccCCeEEEEeccCCCcHHH
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP------------LLQLADHIVSYAKPGAVVGISGILSEQLPH 191 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 191 (225)
..+.||+|++|+|+.. +..+++.+.+.|||||.+++......+..+
T Consensus 245 ----------~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~ 302 (329)
T TIGR01177 245 ----------SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLES 302 (329)
T ss_pred ----------ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHH
Confidence 3568999999998631 467899999999999999886444434443
No 59
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.45 E-value=1.3e-12 Score=106.17 Aligned_cols=135 Identities=16% Similarity=0.142 Sum_probs=90.4
Q ss_pred ceeEEecccceecCCCCchHHHHHHHHHhh---ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSL---IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~---~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
+..+.++++.. .++++..+.+.+-.. ..++.+|||+|||+|.+++.++..++.+++++|+++.+++.+++|+.
T Consensus 22 g~~l~~~~~~~----~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~ 97 (199)
T PRK10909 22 GRKLPVPDSPG----LRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLA 97 (199)
T ss_pred CCEeCCCCCCC----cCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHH
Confidence 34444444333 356666654433222 13578999999999999997666667889999999999999999999
Q ss_pred hcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--HHHHHHHHHH--hccCCeE
Q 041459 103 LNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--LLQLADHIVS--YAKPGAV 178 (225)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~--~LkpgG~ 178 (225)
.+++. ++.+...+.... + .. ....||+|++|||+.. ...+++.+.. +|+|+++
T Consensus 98 ~~~~~--~v~~~~~D~~~~-----------l--------~~--~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~i 154 (199)
T PRK10909 98 TLKAG--NARVVNTNALSF-----------L--------AQ--PGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEAL 154 (199)
T ss_pred HhCCC--cEEEEEchHHHH-----------H--------hh--cCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcE
Confidence 88865 355554432111 0 00 2346999999999632 3445555544 3799999
Q ss_pred EEEeccCCC
Q 041459 179 VGISGILSE 187 (225)
Q Consensus 179 l~~~~~~~~ 187 (225)
+++++....
T Consensus 155 v~ve~~~~~ 163 (199)
T PRK10909 155 IYVESEVEN 163 (199)
T ss_pred EEEEecCCC
Confidence 999765443
No 60
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.44 E-value=1.5e-12 Score=115.84 Aligned_cols=128 Identities=22% Similarity=0.300 Sum_probs=90.9
Q ss_pred eEEecccceecCCCCchH-------HHHHHHH-Hhh-ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHH
Q 041459 28 NIILNPGLAFGTGEHATT-------KLCLLLL-QSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAH 98 (225)
Q Consensus 28 ~~~~~~~~~f~~~~~~~~-------~~~~~~L-~~~-~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~ 98 (225)
.+.++++|.|+++.+... ......+ ... ++++.+|||+|||+|.++..+++....+++|+|+|+.+++.|+
T Consensus 128 ~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~ 207 (383)
T PRK11705 128 EAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQ 207 (383)
T ss_pred HHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 445688888888776421 1111222 222 4578899999999999999888754457999999999999999
Q ss_pred HHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhc
Q 041459 99 QNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYA 173 (225)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~L 173 (225)
++.. ++. +.+...+... ..++||.|++..++++ +..+++.+.++|
T Consensus 208 ~~~~--~l~---v~~~~~D~~~-------------------------l~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~L 257 (383)
T PRK11705 208 ERCA--GLP---VEIRLQDYRD-------------------------LNGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCL 257 (383)
T ss_pred HHhc--cCe---EEEEECchhh-------------------------cCCCCCEEEEeCchhhCChHHHHHHHHHHHHHc
Confidence 8863 221 3343333211 1457999999877654 367899999999
Q ss_pred cCCeEEEEeccC
Q 041459 174 KPGAVVGISGIL 185 (225)
Q Consensus 174 kpgG~l~~~~~~ 185 (225)
||||.+++.++.
T Consensus 258 kpGG~lvl~~i~ 269 (383)
T PRK11705 258 KPDGLFLLHTIG 269 (383)
T ss_pred CCCcEEEEEEcc
Confidence 999999987654
No 61
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.44 E-value=3.7e-12 Score=104.04 Aligned_cols=101 Identities=19% Similarity=0.156 Sum_probs=77.1
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++..+++. ..+.+...++....
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-~~v~~~~~d~~~~~----------- 137 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-GVVEVYHGDGKRGL----------- 137 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEECCcccCC-----------
Confidence 456789999999999999888764 2 468999999999999999999877764 23555555543221
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
....+||+|+++.....+. +.+.+.|+|||.+++.
T Consensus 138 -----------~~~~~fD~Ii~~~~~~~~~---~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 138 -----------EKHAPFDAIIVTAAASTIP---SALVRQLKDGGVLVIP 172 (205)
T ss_pred -----------ccCCCccEEEEccCcchhh---HHHHHhcCcCcEEEEE
Confidence 1346899999987765433 5778899999999874
No 62
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.44 E-value=2e-12 Score=112.23 Aligned_cols=145 Identities=17% Similarity=0.190 Sum_probs=100.3
Q ss_pred ceeEEecccceecCCCCchHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
+..+.+.|+..|.+........ .+.+...+ .++.+|||+|||+|.+++.+++.+ .+++|+|+++.+++.|++|+..
T Consensus 140 ~~~~~~~~~sF~Q~n~~~~~~l-~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~ 217 (315)
T PRK03522 140 GVPLFIRPQSFFQTNPAVAAQL-YATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAE 217 (315)
T ss_pred CEEEEECCCeeeecCHHHHHHH-HHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHH
Confidence 3456667776565544333332 22222222 257899999999999999999875 6799999999999999999998
Q ss_pred cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+++. ++.+...+...+.. . ....||+|++|||.......+......++|++++|++|
T Consensus 218 ~~l~--~v~~~~~D~~~~~~-------~--------------~~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 218 LGLT--NVQFQALDSTQFAT-------A--------------QGEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred cCCC--ceEEEEcCHHHHHH-------h--------------cCCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEEC
Confidence 8874 35666554432200 0 23469999999997654333434445578999999999
Q ss_pred cCCCcHHHHHHH
Q 041459 184 ILSEQLPHIINR 195 (225)
Q Consensus 184 ~~~~~~~~~~~~ 195 (225)
.......++...
T Consensus 275 ~p~t~~rd~~~l 286 (315)
T PRK03522 275 NAQTMAKDLAHL 286 (315)
T ss_pred CcccchhHHhhc
Confidence 988777776554
No 63
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.44 E-value=1.7e-12 Score=110.21 Aligned_cols=105 Identities=28% Similarity=0.442 Sum_probs=80.9
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|||+|||+|..++.+++. + ..+++++|+++.+++.|+++....++. .+.+...+...++.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~--~v~~~~~d~~~l~~---------- 142 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT--NVEFRLGEIEALPV---------- 142 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC--CEEEEEcchhhCCC----------
Confidence 457899999999999988776653 3 357999999999999999998777664 34554444433211
Q ss_pred cccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+++.||+|+++..+++ ...++++++++|||||.++++++
T Consensus 143 ------------~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 143 ------------ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred ------------CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4568999999876643 46789999999999999999755
No 64
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.43 E-value=2.9e-12 Score=105.41 Aligned_cols=100 Identities=15% Similarity=0.198 Sum_probs=76.8
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|||+|||+|.++..+++.. ..+++++|+++.+++.|++++..+++.+ +.+...+.....
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~--v~~~~~d~~~~~----------- 141 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN--VIVIVGDGTQGW----------- 141 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC--eEEEECCcccCC-----------
Confidence 4578999999999999999888753 3469999999999999999998888743 556655543220
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.....||+|+++.+... +.+.+.+.|||||++++.
T Consensus 142 -----------~~~~~fD~Ii~~~~~~~---~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 142 -----------EPLAPYDRIYVTAAGPK---IPEALIDQLKEGGILVMP 176 (215)
T ss_pred -----------cccCCCCEEEEcCCccc---ccHHHHHhcCcCcEEEEE
Confidence 03457999998765543 345677899999999884
No 65
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.43 E-value=1.7e-12 Score=109.31 Aligned_cols=96 Identities=20% Similarity=0.233 Sum_probs=74.9
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|.++..+++. +..+++|+|+|+.|++.|+++ + +.+...+...+.
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~-----~~~~~~d~~~~~------------- 85 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G-----VDARTGDVRDWK------------- 85 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C-----CcEEEcChhhCC-------------
Confidence 46789999999999999988775 456899999999999998753 2 234444433221
Q ss_pred cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+.++||+|+++.++++ ...++.++++.|||||.+++...
T Consensus 86 ----------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 86 ----------PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred ----------CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 3568999999988766 46689999999999999998643
No 66
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.42 E-value=1.9e-12 Score=104.82 Aligned_cols=120 Identities=15% Similarity=0.122 Sum_probs=88.3
Q ss_pred CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
+..++||+|||+|.++..+++ .+..+++|+|+++.+++.|++++...++.+ +.+...+...+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~n--i~~i~~d~~~~~-------------- 79 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKN--LHVLCGDANELL-------------- 79 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCC--EEEEccCHHHHH--------------
Confidence 456899999999999998776 566789999999999999999988777653 555554432210
Q ss_pred ccccccCCCCCCceeEEEeccchhHH-----------HHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPL-----------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
+...+.+.+|.|++++|..++ ..+++.+.+.|||||.+++..........+.+.+.+
T Consensus 80 -----~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~ 147 (194)
T TIGR00091 80 -----DKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE 147 (194)
T ss_pred -----HhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 001134589999998764321 468999999999999999976655555555556554
No 67
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.41 E-value=1.9e-12 Score=112.02 Aligned_cols=104 Identities=19% Similarity=0.148 Sum_probs=75.5
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++++|||+|||+|.++..++..+...++|+|.|+.++..++......... ..+.+...+...++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~-~~v~~~~~~ie~lp-------------- 184 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND-KRAILEPLGIEQLH-------------- 184 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC-CCeEEEECCHHHCC--------------
Confidence 467899999999999999888888778999999999998754432221111 22334333332221
Q ss_pred ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
....||+|+++..+++ +...+.++++.|||||.+++.+.
T Consensus 185 ---------~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 185 ---------ELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred ---------CCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 2357999999887765 45789999999999999998643
No 68
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.41 E-value=4e-12 Score=110.71 Aligned_cols=103 Identities=19% Similarity=0.242 Sum_probs=77.1
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++++|||+|||+|.++..++..+...|+|+|.++.++..++......+.. ..+.+...+...++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~-~~i~~~~~d~e~lp--------------- 185 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGND-QRAHLLPLGIEQLP--------------- 185 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEeCCHHHCC---------------
Confidence 67899999999999999999888778999999999987655433322211 23455544433331
Q ss_pred cccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459 138 SHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
..+.||+|+|...+++ +..++.++++.|+|||.+++.++
T Consensus 186 --------~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 186 --------ALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred --------CcCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 2567999999877755 56789999999999999998643
No 69
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.41 E-value=3.8e-12 Score=116.26 Aligned_cols=105 Identities=21% Similarity=0.199 Sum_probs=80.4
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+.++.+|||+|||+|.++..+++....+++|+|+|+.+++.|+++..... ..+.+...+....+.
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~---~~v~~~~~d~~~~~~------------ 328 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK---CSVEFEVADCTKKTY------------ 328 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC---CceEEEEcCcccCCC------------
Confidence 34678999999999999998887545579999999999999998764222 235555555433211
Q ss_pred cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
++++||+|++...+.+ ...++.+++++|||||.++++++.
T Consensus 329 ----------~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 329 ----------PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred ----------CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 4568999999876654 567899999999999999997653
No 70
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.41 E-value=9e-12 Score=102.89 Aligned_cols=110 Identities=22% Similarity=0.304 Sum_probs=82.7
Q ss_pred CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
++.+|||+|||+|.++..+++. +..+++++|+++.+++.++.+... ++.+...+....+.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~------~~~~~~~d~~~~~~------------- 94 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE------NVQFICGDAEKLPL------------- 94 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC------CCeEEecchhhCCC-------------
Confidence 4578999999999999988775 456799999999999998876541 23444444433211
Q ss_pred ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHH
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQLPHIINR 195 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 195 (225)
++++||+|+++.++++ ...++..+.++|||||.+++.++.......+...
T Consensus 95 ---------~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~ 147 (240)
T TIGR02072 95 ---------EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQS 147 (240)
T ss_pred ---------CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHH
Confidence 4568999999888764 5678999999999999999987766655554443
No 71
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.39 E-value=6e-12 Score=106.03 Aligned_cols=97 Identities=22% Similarity=0.299 Sum_probs=75.9
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|+++.. .+.+...+...+.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-------~~~~~~~d~~~~~------------- 89 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-------DCQFVEADIASWQ------------- 89 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-------CCeEEECchhccC-------------
Confidence 46789999999999999988764 56789999999999999987642 1334444432221
Q ss_pred cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEec
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
...+||+|+++..+++ ...++.++.+.|||||.+++..
T Consensus 90 ----------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 ----------PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ----------CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 3458999999988765 4678999999999999998864
No 72
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.39 E-value=1.8e-11 Score=99.11 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=89.5
Q ss_pred CchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC
Q 041459 42 HATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD 118 (225)
Q Consensus 42 ~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 118 (225)
..+.......+... ..++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++|+..+++. .+.+...+.
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~--~v~~~~~d~ 99 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK--NVEVIEGSA 99 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--CeEEEECch
Confidence 34555555544333 346789999999999999988764 4578999999999999999999877764 255554443
Q ss_pred CCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHH
Q 041459 119 RTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS 197 (225)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 197 (225)
... ... ....+|.++.... ..+..+++.+.+.|+|||.+++.....+....+.+.++
T Consensus 100 ~~~-------~~~--------------~~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~ 156 (196)
T PRK07402 100 PEC-------LAQ--------------LAPAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLA 156 (196)
T ss_pred HHH-------Hhh--------------CCCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHH
Confidence 210 000 1223566665432 34577899999999999999997665444444444444
No 73
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.38 E-value=3.4e-11 Score=100.38 Aligned_cols=153 Identities=16% Similarity=0.211 Sum_probs=104.1
Q ss_pred CcceeEEecccceecCCCCchH-HHHHHHHHhh----ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHH
Q 041459 24 VQATNIILNPGLAFGTGEHATT-KLCLLLLQSL----IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSA 97 (225)
Q Consensus 24 ~~~~~~~~~~~~~f~~~~~~~~-~~~~~~L~~~----~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a 97 (225)
.++..+...|+.-. +++-+ ..+...+... -.++..++|+|||+|.+++.++. .+..+++|+|.|+.++..|
T Consensus 112 F~~l~l~~~pgVlI---PRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La 188 (328)
T KOG2904|consen 112 FGDLDLVCKPGVLI---PRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLA 188 (328)
T ss_pred cCCceEEecCCeee---cCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHH
Confidence 45667777777543 33333 3333333222 11456899999999999998765 6888899999999999999
Q ss_pred HHHHHhcCCCCCcceEEEec--CCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--------------
Q 041459 98 HQNAALNNIGPKKMKLHLVP--DRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-------------- 161 (225)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------- 161 (225)
.+|+.++.+.+ .+.+...+ .+.+.. . -...+++|++++||||-.
T Consensus 189 ~eN~qr~~l~g-~i~v~~~~me~d~~~~------------~-------~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~y 248 (328)
T KOG2904|consen 189 KENAQRLKLSG-RIEVIHNIMESDASDE------------H-------PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLY 248 (328)
T ss_pred HHHHHHHhhcC-ceEEEecccccccccc------------c-------ccccCceeEEecCCCcccccchhhcCchheec
Confidence 99999988874 45444322 221100 0 004578999999999621
Q ss_pred ---------------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 162 ---------------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 162 ---------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
+..+..-+.+.|+|||.+.+.-....+...+...+...
T Consensus 249 Ep~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s 301 (328)
T KOG2904|consen 249 EPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMIS 301 (328)
T ss_pred CchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHh
Confidence 23456778899999999999866666666666665543
No 74
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.38 E-value=4.8e-12 Score=98.22 Aligned_cols=96 Identities=28% Similarity=0.366 Sum_probs=73.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++.+. +++|+|+++.+++. .. ............
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~---------~~---~~~~~~~~~~~~------------- 73 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK---------RN---VVFDNFDAQDPP------------- 73 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH---------TT---SEEEEEECHTHH-------------
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh---------hh---hhhhhhhhhhhh-------------
Confidence 35688999999999999999988877 89999999999887 10 111111110100
Q ss_pred cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (225)
.+.+.||+|+++..+++ ...+++.+.++|||||.++++....
T Consensus 74 ---------~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 74 ---------FPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp ---------CHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ---------ccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 04678999999988876 5678999999999999999987754
No 75
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.38 E-value=5.4e-12 Score=112.06 Aligned_cols=144 Identities=15% Similarity=0.187 Sum_probs=99.8
Q ss_pred ceeEEecccceecCCCCchHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
+..+.++|+..|.+... ....+...+.... .++.+|||+|||+|.+++.++..+ .+++|+|+++.+++.|++|+..
T Consensus 200 g~~~~~~~~~F~Q~n~~-~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~ 277 (374)
T TIGR02085 200 DVPLVIRPQSFFQTNPK-VAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQM 277 (374)
T ss_pred CEEEEECCCccccCCHH-HHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHH
Confidence 45677777766655443 3333333333322 256799999999999999988765 6799999999999999999998
Q ss_pred cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHH-HHHHHHHHhccCCeEEEEe
Q 041459 104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLL-QLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~-~~l~~~~~~LkpgG~l~~~ 182 (225)
+++. ++.+...+...+. . . ....||+|++|||..... .+++.+. .++|++++|++
T Consensus 278 ~~~~--~~~~~~~d~~~~~-------~------------~--~~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 278 LGLD--NLSFAALDSAKFA-------T------------A--QMSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred cCCC--cEEEEECCHHHHH-------H------------h--cCCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence 8875 3555554432210 0 0 123599999999986543 4445454 57999999999
Q ss_pred ccCCCcHHHHHHH
Q 041459 183 GILSEQLPHIINR 195 (225)
Q Consensus 183 ~~~~~~~~~~~~~ 195 (225)
|......+++...
T Consensus 334 c~p~TlaRDl~~L 346 (374)
T TIGR02085 334 CNAQTMAKDIAEL 346 (374)
T ss_pred eCHHHHHHHHHHh
Confidence 9877666776655
No 76
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.37 E-value=3e-12 Score=92.71 Aligned_cols=91 Identities=29% Similarity=0.488 Sum_probs=67.7
Q ss_pred EEEEcccccHHHHHHHhc---C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 62 FLDYGTGSGILGIAAIKF---G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 62 vlDiGcGtG~~~~~l~~~---~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
|||+|||+|..+..+++. + ..+++|+|+|+.+++.++++....+. .+++...+...++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~---~~~~~~~D~~~l~~-------------- 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP---KVRFVQADARDLPF-------------- 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT---TSEEEESCTTCHHH--------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC---ceEEEECCHhHCcc--------------
Confidence 799999999999988765 2 37899999999999999999876554 36677766654421
Q ss_pred cccccCCCCCCceeEEEeccc-hhH-----HHHHHHHHHHhccCCe
Q 041459 138 SHEIRGISETEKYDVVIANIL-LNP-----LLQLADHIVSYAKPGA 177 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~-~~~-----~~~~l~~~~~~LkpgG 177 (225)
..++||+|++... +++ ...+++++.+.|+|||
T Consensus 64 --------~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 64 --------SDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp --------HSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred --------cCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 4668999999433 433 5678999999999998
No 77
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.37 E-value=7.1e-12 Score=103.28 Aligned_cols=102 Identities=17% Similarity=0.245 Sum_probs=79.3
Q ss_pred CcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459 60 ELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS 138 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (225)
++|||+|||+|..+..+++. +..+++|+|+|+.+++.|++++...++. .++.+...+....+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~-~~i~~~~~d~~~~~---------------- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ-GRIRIFYRDSAKDP---------------- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC-cceEEEecccccCC----------------
Confidence 46999999999999988764 4568999999999999999998877765 34555554432211
Q ss_pred ccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459 139 HEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 139 ~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
..++||+|++..++++ ...+++.+.++|||||.+++.++.
T Consensus 64 -------~~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 64 -------FPDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred -------CCCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 2357999999766654 467899999999999999987653
No 78
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.37 E-value=1.5e-11 Score=100.98 Aligned_cols=100 Identities=18% Similarity=0.245 Sum_probs=76.8
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|||+|||+|.++..+++. + ..+++++|+++.+++.|++++...++. ++.+...++....
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~--~v~~~~gd~~~~~----------- 140 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD--NVEVIVGDGTLGY----------- 140 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CeEEEECCcccCC-----------
Confidence 457899999999999999888875 3 368999999999999999999877764 3666666653321
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.....||+|+++..... +...+.+.|||||.+++.
T Consensus 141 -----------~~~~~fD~I~~~~~~~~---~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 141 -----------EENAPYDRIYVTAAGPD---IPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred -----------CcCCCcCEEEECCCccc---chHHHHHhhCCCcEEEEE
Confidence 13568999998765443 334667789999998884
No 79
>PLN02672 methionine S-methyltransferase
Probab=99.37 E-value=2.4e-11 Score=118.91 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=102.5
Q ss_pred CCcceeEEecccceecCCCCchHHHHHHHHHhhcc---CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHH
Q 041459 23 DVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIK---GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAH 98 (225)
Q Consensus 23 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~---~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~ 98 (225)
...+..+.++|+... +++.+..+.+.|..... ++.+|+|+|||+|.+++.+++. +..+++|+|+|+.+++.|+
T Consensus 83 ~F~~l~~~V~p~VLI---PRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~ 159 (1082)
T PLN02672 83 NRKKLTMMEIPSIFI---PEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAW 159 (1082)
T ss_pred EecCCceeeCCCccc---CchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 344566777777432 45555555555543321 2468999999999999998864 5578999999999999999
Q ss_pred HHHHhcCCCC--------------CcceEEEecCCCCCccccccccccccccccccccCCCC-CCceeEEEeccchhH--
Q 041459 99 QNAALNNIGP--------------KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISE-TEKYDVVIANILLNP-- 161 (225)
Q Consensus 99 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DvIi~~~~~~~-- 161 (225)
+|+..++++. +++.+...|. +. .+.. ..+||+|++|||+-.
T Consensus 160 ~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl--~~--------------------~~~~~~~~fDlIVSNPPYI~~~ 217 (1082)
T PLN02672 160 INLYLNALDDDGLPVYDGEGKTLLDRVEFYESDL--LG--------------------YCRDNNIELDRIVGCIPQILNP 217 (1082)
T ss_pred HHHHHcCcccccccccccccccccccEEEEECch--hh--------------------hccccCCceEEEEECCCcCCCc
Confidence 9999876531 1233433332 10 1111 236999999999510
Q ss_pred ---------------------------------------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHH-HHHHh
Q 041459 162 ---------------------------------------LLQLADHIVSYAKPGAVVGISGILSEQLPHII-NRYSE 198 (225)
Q Consensus 162 ---------------------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~ 198 (225)
++.++..+.++|+|||.+++ +++..+...+. +.+..
T Consensus 218 e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-EiG~~q~~~v~~~l~~~ 293 (1082)
T PLN02672 218 NPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-NMGGRPGQAVCERLFER 293 (1082)
T ss_pred chhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-EECccHHHHHHHHHHHH
Confidence 24567888899999999987 57777777776 46554
No 80
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.37 E-value=1.8e-11 Score=106.98 Aligned_cols=100 Identities=18% Similarity=0.187 Sum_probs=76.0
Q ss_pred cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|.++..+++ .+..+++++|+++.+++.|+++.... .+.+...+....+.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~-----~i~~i~gD~e~lp~------------ 174 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-----ECKIIEGDAEDLPF------------ 174 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc-----CCeEEeccHHhCCC------------
Confidence 3578999999999999888765 35578999999999999999875422 23444444433211
Q ss_pred cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEec
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+.+.||+|+++..+++ ....++++.+.|||||.+++.+
T Consensus 175 ----------~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 175 ----------PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred ----------CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 4568999999877654 4568999999999999998754
No 81
>PRK04266 fibrillarin; Provisional
Probab=99.37 E-value=3.1e-11 Score=100.04 Aligned_cols=103 Identities=19% Similarity=0.193 Sum_probs=73.2
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
++++.+|||+|||+|.++..+++. +..+|+|+|+++.|++.+.+++... . ++.....+..... ....
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~--nv~~i~~D~~~~~-----~~~~--- 137 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--K--NIIPILADARKPE-----RYAH--- 137 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--C--CcEEEECCCCCcc-----hhhh---
Confidence 557899999999999999998875 4468999999999999887766532 2 2444444432210 0000
Q ss_pred ccccccccCCCCCCceeEEEeccchhH-HHHHHHHHHHhccCCeEEEE
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNP-LLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-~~~~l~~~~~~LkpgG~l~~ 181 (225)
...+||+|+++.+..+ ...++..+.+.|||||.+++
T Consensus 138 -----------l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 138 -----------VVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred -----------ccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 1346999998765432 24468899999999999999
No 82
>PRK06922 hypothetical protein; Provisional
Probab=99.36 E-value=1.1e-11 Score=115.19 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=78.5
Q ss_pred CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
++.+|||+|||+|..+..+++ .+..+++|+|+++.|++.|+++....+. .+.+...+...++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~---~ie~I~gDa~dLp-------------- 480 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR---SWNVIKGDAINLS-------------- 480 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC---CeEEEEcchHhCc--------------
Confidence 578999999999999887775 5677899999999999999988654442 2344444433221
Q ss_pred ccccccCCCCCCceeEEEeccchhH----------------HHHHHHHHHHhccCCeEEEEecc
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP----------------LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
...++++||+|++++++++ ...+++++++.|||||.+++.+.
T Consensus 481 ------~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 481 ------SSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred ------cccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 0014678999999877653 35678999999999999999754
No 83
>PRK05785 hypothetical protein; Provisional
Probab=99.35 E-value=2.5e-11 Score=100.70 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=67.9
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||||.++..+++....+++|+|+|++|++.|+++. . ....+...++.
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------~---~~~~d~~~lp~------------- 106 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------D---KVVGSFEALPF------------- 106 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------c---eEEechhhCCC-------------
Confidence 357899999999999999888763457999999999999997641 1 22333333322
Q ss_pred ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCC
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPG 176 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~Lkpg 176 (225)
++++||+|+++..+++ ....++++.+.|||.
T Consensus 107 ---------~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 107 ---------RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ---------CCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 5788999999887754 567899999999995
No 84
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.35 E-value=2.5e-11 Score=102.98 Aligned_cols=117 Identities=18% Similarity=0.174 Sum_probs=85.1
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|.+|||+|||+|..+..+++. ....++++|+++.+++.+++|+..+++.+ +.+...+...+..
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~--v~~~~~D~~~~~~---------- 136 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN--VAVTNFDGRVFGA---------- 136 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc--EEEecCCHHHhhh----------
Confidence 457899999999999999988764 24589999999999999999999888753 5555544432210
Q ss_pred cccccccccCCCCCCceeEEEeccchh-------------------------HHHHHHHHHHHhccCCeEEEEecc-C-C
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISGI-L-S 186 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-------------------------~~~~~l~~~~~~LkpgG~l~~~~~-~-~ 186 (225)
....||+|++++|.. ...+++..+.++|||||++++++. . .
T Consensus 137 ------------~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 137 ------------AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred ------------hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 234699999987732 124589999999999999988633 2 3
Q ss_pred CcHHHHHHHH
Q 041459 187 EQLPHIINRY 196 (225)
Q Consensus 187 ~~~~~~~~~~ 196 (225)
.+.+...+.+
T Consensus 205 ~Ene~vv~~~ 214 (264)
T TIGR00446 205 EENEAVVDYL 214 (264)
T ss_pred HHHHHHHHHH
Confidence 3434444443
No 85
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.34 E-value=2.7e-13 Score=97.70 Aligned_cols=95 Identities=27% Similarity=0.381 Sum_probs=58.9
Q ss_pred EEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccc
Q 041459 63 LDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEI 141 (225)
Q Consensus 63 lDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (225)
||+|||+|.++..+++ .+..+++++|+|+.|++.|++++....... ...+.....+...
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~------------------- 60 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFD------------------- 60 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS----------------------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhh-------------------
Confidence 7999999999998765 477889999999999988888887665432 1112222211110
Q ss_pred cCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEE
Q 041459 142 RGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVV 179 (225)
Q Consensus 142 ~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l 179 (225)
....++||+|++...+++ +..++.++.++|||||.+
T Consensus 61 --~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 61 --YDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --CCC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred --cccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 002358999999888766 467899999999999986
No 86
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.34 E-value=1.6e-11 Score=102.41 Aligned_cols=109 Identities=11% Similarity=0.204 Sum_probs=85.0
Q ss_pred CCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++++|||+|||+|+.++++++. +..+++++|+++.+++.|++|+..+++. +++++..++.... +..+..+
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-~~i~~~~gda~~~-------L~~l~~~ 139 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-HKINFIQSDALSA-------LDQLLNN 139 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEccHHHH-------HHHHHhC
Confidence 5789999999999988887653 4678999999999999999999999987 5667766554221 1111000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
.+.++||+|+++.....+..+++.+.+.|+|||++++..
T Consensus 140 ---------~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 140 ---------DPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred ---------CCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 024689999999887888899999999999999999743
No 87
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.34 E-value=2e-11 Score=110.44 Aligned_cols=142 Identities=16% Similarity=0.183 Sum_probs=95.4
Q ss_pred ecCCCCchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcce
Q 041459 37 FGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMK 112 (225)
Q Consensus 37 f~~~~~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~ 112 (225)
|..|....+.....++... +++|.+|||+|||+|..+..+++. +..+++++|+++.+++.+++|+..+++.+ +.
T Consensus 229 f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~--v~ 306 (434)
T PRK14901 229 YEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS--IK 306 (434)
T ss_pred HhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe--EE
Confidence 4444444444444444332 457899999999999999988864 34689999999999999999999988763 55
Q ss_pred EEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-------------------------HHHHHH
Q 041459 113 LHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-------------------------LLQLAD 167 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------------~~~~l~ 167 (225)
+...+....+. . .. ...+.||.|++++|... ..+++.
T Consensus 307 ~~~~D~~~~~~----~-~~-------------~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~ 368 (434)
T PRK14901 307 ILAADSRNLLE----L-KP-------------QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLE 368 (434)
T ss_pred EEeCChhhccc----c-cc-------------cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHH
Confidence 65555433210 0 00 02457999999876310 346799
Q ss_pred HHHHhccCCeEEEEec-cC-C-CcHHHHHHHHHh
Q 041459 168 HIVSYAKPGAVVGISG-IL-S-EQLPHIINRYSE 198 (225)
Q Consensus 168 ~~~~~LkpgG~l~~~~-~~-~-~~~~~~~~~~~~ 198 (225)
++.++|||||++++++ .. . ++...+...+++
T Consensus 369 ~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 369 SLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred HHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 9999999999988753 32 2 334444455544
No 88
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.33 E-value=1.2e-11 Score=111.78 Aligned_cols=150 Identities=21% Similarity=0.208 Sum_probs=98.1
Q ss_pred ceeEEecccceecCCCCchHHHHHHHHHhh-ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN 104 (225)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~ 104 (225)
+..+.++|+..|.............++... +.++.+|||+|||+|.+++.+++.. .+++|+|+++.+++.|++|+..+
T Consensus 259 ~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~ 337 (431)
T TIGR00479 259 DLSFSLSARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELN 337 (431)
T ss_pred CEEEEECCCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHh
Confidence 456667777555543332322322222222 3456899999999999999988764 57999999999999999999988
Q ss_pred CCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-HHHHHHHHHHhccCCeEEEEec
Q 041459 105 NIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-LLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
++.+ +.+...+.... +..+ ......||+|++++|... ...+++.+. .++|++++|++|
T Consensus 338 ~~~n--v~~~~~d~~~~-------l~~~-----------~~~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvsc 396 (431)
T TIGR00479 338 GIAN--VEFLAGTLETV-------LPKQ-----------PWAGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVSC 396 (431)
T ss_pred CCCc--eEEEeCCHHHH-------HHHH-----------HhcCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEcC
Confidence 8753 55555443211 0000 002356999999999754 345555544 489999999998
Q ss_pred cCCCcHHHHHHHHH
Q 041459 184 ILSEQLPHIINRYS 197 (225)
Q Consensus 184 ~~~~~~~~~~~~~~ 197 (225)
.......++.....
T Consensus 397 ~p~tlard~~~l~~ 410 (431)
T TIGR00479 397 NPATLARDLEFLCK 410 (431)
T ss_pred CHHHHHHHHHHHHH
Confidence 76544445444433
No 89
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.33 E-value=2e-11 Score=98.57 Aligned_cols=123 Identities=19% Similarity=0.183 Sum_probs=87.7
Q ss_pred CCchHHHHHHHHHhhc---cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEec
Q 041459 41 EHATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVP 117 (225)
Q Consensus 41 ~~~~~~~~~~~L~~~~---~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~ 117 (225)
.+|+...+.+.+-..+ -++.++||++||+|.+++.+++.|+..++++|.++.+++.+++|+..+++. +++.+...+
T Consensus 29 ~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~-~~~~~~~~D 107 (189)
T TIGR00095 29 TRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG-EQAEVVRNS 107 (189)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc-ccEEEEehh
Confidence 5778877777664443 258899999999999999999998889999999999999999999988875 344555443
Q ss_pred CCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--HHHHHHHHH--HhccCCeEEEEe
Q 041459 118 DRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--LLQLADHIV--SYAKPGAVVGIS 182 (225)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~--~~LkpgG~l~~~ 182 (225)
...+ +... ......+|+|+.+||+.. ...+++.+. .+|+++|++++.
T Consensus 108 ~~~~-------l~~~-----------~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 108 ALRA-------LKFL-----------AKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred HHHH-------HHHh-----------hccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 3111 0000 001234899999999843 344444443 468899988884
No 90
>PRK08317 hypothetical protein; Provisional
Probab=99.33 E-value=5e-11 Score=98.27 Aligned_cols=103 Identities=19% Similarity=0.236 Sum_probs=77.5
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+.++.+|||+|||+|.++..++.. +..+++++|+++.+++.|+++..... ..+.+...+....+.
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~---------- 83 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG---PNVEFVRGDADGLPF---------- 83 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC---CceEEEecccccCCC----------
Confidence 446789999999999999988764 45789999999999999988733222 234444444332211
Q ss_pred cccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
..+.||+|+++..+++ ...+++++.++|||||.+++.+
T Consensus 84 ------------~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 84 ------------PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred ------------CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 4568999999877654 5678999999999999998864
No 91
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.32 E-value=3.1e-11 Score=108.94 Aligned_cols=120 Identities=17% Similarity=0.185 Sum_probs=86.4
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
+.+|.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++|+..+++. +.+...+.....
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~---~~~~~~D~~~~~------------ 306 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK---ATVIVGDARDPA------------ 306 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEcCcccch------------
Confidence 4578999999999999999988753 368999999999999999999988764 344444443221
Q ss_pred ccccccccCCCCCCceeEEEeccchhH-------------------------HHHHHHHHHHhccCCeEEEEecc---CC
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNP-------------------------LLQLADHIVSYAKPGAVVGISGI---LS 186 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~---~~ 186 (225)
......+||.|++++|... ...++..+.++|||||.+++++. ..
T Consensus 307 --------~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~ 378 (427)
T PRK10901 307 --------QWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE 378 (427)
T ss_pred --------hhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 0003467999999887421 23678999999999999987643 23
Q ss_pred CcHHHHHHHHHh
Q 041459 187 EQLPHIINRYSE 198 (225)
Q Consensus 187 ~~~~~~~~~~~~ 198 (225)
++...+...+++
T Consensus 379 Ene~~v~~~l~~ 390 (427)
T PRK10901 379 ENEQQIKAFLAR 390 (427)
T ss_pred hCHHHHHHHHHh
Confidence 344444455543
No 92
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.32 E-value=2.6e-11 Score=109.53 Aligned_cols=124 Identities=12% Similarity=0.168 Sum_probs=88.9
Q ss_pred ecCCCCchHHHHHHHHHh--hccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcce
Q 041459 37 FGTGEHATTKLCLLLLQS--LIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMK 112 (225)
Q Consensus 37 f~~~~~~~~~~~~~~L~~--~~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~ 112 (225)
|..|....+.....++.. .+.+|.+|||+|||+|..+.++++. +..+++++|+++.+++.+++++...++.+ +.
T Consensus 214 ~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~--v~ 291 (431)
T PRK14903 214 IKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS--IE 291 (431)
T ss_pred HHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe--EE
Confidence 444554444443333322 2457889999999999999988864 35789999999999999999999888753 55
Q ss_pred EEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-------------------------HHHHHHH
Q 041459 113 LHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-------------------------PLLQLAD 167 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------------------------~~~~~l~ 167 (225)
+...+...++. . ..++||.|++++|.. ...+++.
T Consensus 292 ~~~~Da~~l~~--------~-------------~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~ 350 (431)
T PRK14903 292 IKIADAERLTE--------Y-------------VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVS 350 (431)
T ss_pred EEECchhhhhh--------h-------------hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHH
Confidence 55555433210 0 245799999987751 1256789
Q ss_pred HHHHhccCCeEEEEec
Q 041459 168 HIVSYAKPGAVVGISG 183 (225)
Q Consensus 168 ~~~~~LkpgG~l~~~~ 183 (225)
++.+.|||||.+++++
T Consensus 351 ~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 351 QAWKLLEKGGILLYST 366 (431)
T ss_pred HHHHhcCCCCEEEEEE
Confidence 9999999999988853
No 93
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.32 E-value=1.8e-11 Score=100.36 Aligned_cols=122 Identities=17% Similarity=0.187 Sum_probs=83.2
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
.+++.+|||+|||+|.++..+++. + ...|+|+|+++ + +... .+.+...+....+ .+..++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~--~v~~i~~D~~~~~-----~~~~i~ 110 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIV--GVDFLQGDFRDEL-----VLKALL 110 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCC--CcEEEecCCCChH-----HHHHHH
Confidence 467889999999999999988775 2 36899999988 1 1222 2445555443320 000000
Q ss_pred cccccccccCCCCCCceeEEEeccchh--------H------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLN--------P------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~--------~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
. -....+||+|++++..+ . ...+++.+.+.|||||.+++..+..+...++...++..
T Consensus 111 ~---------~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~ 181 (209)
T PRK11188 111 E---------RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL 181 (209)
T ss_pred H---------HhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhC
Confidence 0 00457899999976321 1 24578999999999999999888888888888887766
Q ss_pred hhhhc
Q 041459 200 LEDIL 204 (225)
Q Consensus 200 ~~~~~ 204 (225)
|..++
T Consensus 182 f~~v~ 186 (209)
T PRK11188 182 FTKVK 186 (209)
T ss_pred ceEEE
Confidence 65444
No 94
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.32 E-value=2.6e-11 Score=107.16 Aligned_cols=116 Identities=12% Similarity=0.168 Sum_probs=87.3
Q ss_pred CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.+..+||+|||+|.++..+|+ .+...++|+|+++.++..|.+++..+++.+ +.+...++..+ ...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N--V~~i~~DA~~l-------l~~----- 187 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN--LLIINYDARLL-------LEL----- 187 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc--EEEEECCHHHh-------hhh-----
Confidence 456899999999999999876 567789999999999999999998888764 66665554321 001
Q ss_pred ccccccCCCCCCceeEEEeccchhHH---------HHHHHHHHHhccCCeEEEEeccCCCcHHHHHHH
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPL---------LQLADHIVSYAKPGAVVGISGILSEQLPHIINR 195 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~---------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 195 (225)
.+++++|.|++++|..+. ..+++.+.++|+|||.+.+.+...+......+.
T Consensus 188 --------~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~ 247 (390)
T PRK14121 188 --------LPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLEL 247 (390)
T ss_pred --------CCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHH
Confidence 157889999999876432 467999999999999999965544333333333
No 95
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.31 E-value=1.1e-11 Score=99.66 Aligned_cols=138 Identities=20% Similarity=0.230 Sum_probs=90.8
Q ss_pred CcceeEEecccceecCCCCchHHHHHHHHHhhc----cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Q 041459 24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLI----KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~----~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~ 99 (225)
..+..+..+++. ..+||+..+.+.+-+.+ -.|.++||++||||.+++.+++.|+.+++.||.++.+++..++
T Consensus 8 ~kgr~l~~p~~~----~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~ 83 (183)
T PF03602_consen 8 YKGRKLKTPKGD----NTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKK 83 (183)
T ss_dssp TTT-EEE-TT------TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHH
T ss_pred cCCCEecCCCCC----CcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 344555555543 36888888887765442 2689999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHH--Hhcc
Q 041459 100 NAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIV--SYAK 174 (225)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~--~~Lk 174 (225)
|+...+..+ ++.+...+...+ +... .....+||+|+++|||.. +..+++.+. .+|+
T Consensus 84 N~~~l~~~~-~~~v~~~d~~~~-------l~~~-----------~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~ 144 (183)
T PF03602_consen 84 NLEKLGLED-KIRVIKGDAFKF-------LLKL-----------AKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLN 144 (183)
T ss_dssp HHHHHT-GG-GEEEEESSHHHH-------HHHH-----------HHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEE
T ss_pred HHHHhCCCc-ceeeeccCHHHH-------HHhh-----------cccCCCceEEEECCCcccchHHHHHHHHHHHCCCCC
Confidence 999888663 344444332110 0000 003678999999999853 366777776 7899
Q ss_pred CCeEEEEecc
Q 041459 175 PGAVVGISGI 184 (225)
Q Consensus 175 pgG~l~~~~~ 184 (225)
++|.+++...
T Consensus 145 ~~~~ii~E~~ 154 (183)
T PF03602_consen 145 EDGLIIIEHS 154 (183)
T ss_dssp EEEEEEEEEE
T ss_pred CCEEEEEEec
Confidence 9999998543
No 96
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.31 E-value=4.3e-11 Score=101.83 Aligned_cols=119 Identities=20% Similarity=0.227 Sum_probs=81.9
Q ss_pred hHHHHHHHHHhhc-cCCCcEEEEcccccHHHHHHHhc-C---CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC
Q 041459 44 TTKLCLLLLQSLI-KGGELFLDYGTGSGILGIAAIKF-G---AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD 118 (225)
Q Consensus 44 ~~~~~~~~L~~~~-~~~~~vlDiGcGtG~~~~~l~~~-~---~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 118 (225)
....+...+.... .++.+|||+|||+|.++..+++. + ...++|+|+|+.+++.|+++.. .+.+...+.
T Consensus 70 l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~-------~~~~~~~d~ 142 (272)
T PRK11088 70 LRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP-------QVTFCVASS 142 (272)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC-------CCeEEEeec
Confidence 3333334444332 34578999999999999887753 2 2369999999999999976531 234555444
Q ss_pred CCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHH
Q 041459 119 RTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINR 195 (225)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 195 (225)
..++. ++++||+|++.... ..++++.+.|||||.+++.........++.+.
T Consensus 143 ~~lp~----------------------~~~sfD~I~~~~~~----~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 143 HRLPF----------------------ADQSLDAIIRIYAP----CKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred ccCCC----------------------cCCceeEEEEecCC----CCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 43322 46789999986542 23578899999999999987776666665544
No 97
>PRK00811 spermidine synthase; Provisional
Probab=99.31 E-value=7.7e-11 Score=100.92 Aligned_cols=140 Identities=13% Similarity=0.134 Sum_probs=96.4
Q ss_pred CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCcceEEEecCCCCCccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNN---IGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
.+++||++|||+|.++..+++. +..+++++|+++.+++.|++.+.... ....++.+...++..+ +
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~-----------l 144 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF-----------V 144 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH-----------H
Confidence 5689999999999999998876 67789999999999999999876432 1234566666655332 1
Q ss_pred cccccccccCCCCCCceeEEEeccchh-----H--HHHHHHHHHHhccCCeEEEEeccC----CCcHHHHHHHHHhhhhh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLN-----P--LLQLADHIVSYAKPGAVVGISGIL----SEQLPHIINRYSEFLED 202 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~--~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~~~~~~~ 202 (225)
. . ..++||+|+++.+.. . ..++++.+.+.|+|||++++..-. ......+.+.+++.|..
T Consensus 145 ~--------~--~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~ 214 (283)
T PRK00811 145 A--------E--TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPI 214 (283)
T ss_pred h--------h--CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCC
Confidence 0 0 356899999974321 1 256788999999999999884221 12334455555655554
Q ss_pred hccc-------ccCCceEEEeee
Q 041459 203 ILLS-------EMDDWTCVSGTK 218 (225)
Q Consensus 203 ~~~~-------~~~~w~~~~~~k 218 (225)
+... ..+.|.-+.+.+
T Consensus 215 v~~~~~~vp~~~~~~w~f~~as~ 237 (283)
T PRK00811 215 VRPYQAAIPTYPSGLWSFTFASK 237 (283)
T ss_pred EEEEEeECCcccCchheeEEeec
Confidence 4432 247788777776
No 98
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.31 E-value=5.3e-11 Score=98.42 Aligned_cols=106 Identities=19% Similarity=0.235 Sum_probs=80.2
Q ss_pred CCCcEEEEcccccHHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++.+|||+|||+|.++..++... ..+++++|+++.+++.++++...++.. ..+.+...+....+.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~------------ 117 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS-GNVEFVQGDAEALPF------------ 117 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc-cCeEEEecccccCCC------------
Confidence 57899999999999999888754 478999999999999999987654443 234454444332210
Q ss_pred cccccccCCCCCCceeEEEeccchh---HHHHHHHHHHHhccCCeEEEEeccCC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (225)
..+.||+|+++..++ ....++..+.++|+|||.+++.++..
T Consensus 118 ----------~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 118 ----------PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred ----------CCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 356899999876654 35678999999999999998865543
No 99
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.29 E-value=1.9e-11 Score=99.36 Aligned_cols=135 Identities=24% Similarity=0.317 Sum_probs=92.8
Q ss_pred CCCCCCCcceeEEeccc-ceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHH
Q 041459 18 WSTPPDVQATNIILNPG-LAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIK 95 (225)
Q Consensus 18 ~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~ 95 (225)
+++.+++.++.+.+|+. ..|.++. ... ...+...++++.+|+|++||-|.+++.+++ .....|+++|++|.+++
T Consensus 64 ~~t~~~E~G~~f~~D~~kvyfs~rl-~~E---r~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~ 139 (200)
T PF02475_consen 64 TETIHKENGIRFKVDLSKVYFSPRL-STE---RRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVE 139 (200)
T ss_dssp SEEEEEETTEEEEEETTTS---GGG-HHH---HHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHH
T ss_pred eEEEEEeCCEEEEEccceEEEcccc-HHH---HHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHH
Confidence 56778999999999999 4444332 111 223445577899999999999999999887 45677999999999999
Q ss_pred HHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccC
Q 041459 96 SAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKP 175 (225)
Q Consensus 96 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkp 175 (225)
..++|+..|++. +.+.....|+..+. +...+|.|+++.|.... .++..+..++++
T Consensus 140 ~L~~Ni~lNkv~-~~i~~~~~D~~~~~-----------------------~~~~~drvim~lp~~~~-~fl~~~~~~~~~ 194 (200)
T PF02475_consen 140 YLKENIRLNKVE-NRIEVINGDAREFL-----------------------PEGKFDRVIMNLPESSL-EFLDAALSLLKE 194 (200)
T ss_dssp HHHHHHHHTT-T-TTEEEEES-GGG--------------------------TT-EEEEEE--TSSGG-GGHHHHHHHEEE
T ss_pred HHHHHHHHcCCC-CeEEEEcCCHHHhc-----------------------CccccCEEEECChHHHH-HHHHHHHHHhcC
Confidence 999999999988 46666666654431 36789999998875433 467778889999
Q ss_pred CeEEEE
Q 041459 176 GAVVGI 181 (225)
Q Consensus 176 gG~l~~ 181 (225)
||++.+
T Consensus 195 ~g~ihy 200 (200)
T PF02475_consen 195 GGIIHY 200 (200)
T ss_dssp EEEEEE
T ss_pred CcEEEC
Confidence 998753
No 100
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.29 E-value=6.4e-11 Score=106.91 Aligned_cols=122 Identities=17% Similarity=0.158 Sum_probs=84.9
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
+.+|.+|||+|||+|..+..+++. +..+++++|+++.+++.+++|+...++. +.+...+++....
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~---~~v~~~~~d~~~~----------- 301 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT---IKAETKDGDGRGP----------- 301 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEeccccccc-----------
Confidence 457899999999999999998874 5578999999999999999999988875 2333333322100
Q ss_pred ccccccccCCCCCCceeEEEeccchhH-------------------------HHHHHHHHHHhccCCeEEEEeccC--C-
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNP-------------------------LLQLADHIVSYAKPGAVVGISGIL--S- 186 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~~--~- 186 (225)
........||.|++++|... ...++.++.++|||||.+++++.. .
T Consensus 302 -------~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~ 374 (426)
T TIGR00563 302 -------SQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE 374 (426)
T ss_pred -------cccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 00003457999998766311 246899999999999999986332 2
Q ss_pred CcHHHHHHHHHh
Q 041459 187 EQLPHIINRYSE 198 (225)
Q Consensus 187 ~~~~~~~~~~~~ 198 (225)
++...+...+.+
T Consensus 375 Ene~~v~~~l~~ 386 (426)
T TIGR00563 375 ENSEQIKAFLQE 386 (426)
T ss_pred hCHHHHHHHHHh
Confidence 333334444443
No 101
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.29 E-value=1.2e-10 Score=95.50 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=76.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.+++.+|||+|||+|.++..+++.. .+++++|+++.+++.|++++...++.+ +.+...+....
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~-------------- 138 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHN--VSVRHGDGWKG-------------- 138 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCc--eEEEECCcccC--------------
Confidence 4467899999999999998877764 479999999999999999998877653 55555443211
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+...++||+|+++.....+ ...+.+.|+|||.+++..
T Consensus 139 --------~~~~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 139 --------WPAYAPFDRILVTAAAPEI---PRALLEQLKEGGILVAPV 175 (212)
T ss_pred --------CCcCCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEEE
Confidence 0134689999998765544 456788999999998853
No 102
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.29 E-value=2.4e-11 Score=103.24 Aligned_cols=99 Identities=16% Similarity=0.210 Sum_probs=73.7
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe--cCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV--PDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 135 (225)
.|++|||||||+|+++..++..|++.|+|+|-++......+......+.. ...... ..+.+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~---~~~~~lplgvE~L-------------- 177 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD---PPVFELPLGVEDL-------------- 177 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC---ccEEEcCcchhhc--------------
Confidence 69999999999999999999999999999999887776654433333322 112221 12222
Q ss_pred cccccccCCCCCCceeEEEeccchhHH---HHHHHHHHHhccCCeEEEEe
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~---~~~l~~~~~~LkpgG~l~~~ 182 (225)
...+.||+|+|..+++|. ...+..+...|++||.+++.
T Consensus 178 ---------p~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 178 ---------PNLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred ---------cccCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 135689999999888774 46788899999999999974
No 103
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=5.7e-11 Score=98.44 Aligned_cols=124 Identities=25% Similarity=0.278 Sum_probs=99.3
Q ss_pred ccCCCcEEEEcccccHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIK--FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~--~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+.+|++|+|.|+|+|.++.+++. .+..+++..|+.+..++.|++|+...++.+ .+.....|....
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d-~v~~~~~Dv~~~------------ 158 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD-RVTLKLGDVREG------------ 158 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcccc-ceEEEecccccc------------
Confidence 56899999999999999999886 356899999999999999999999888774 355555443322
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhcc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILL 205 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 205 (225)
...+.||.|+.+.|-. -++++++.+.|||||.+++-+...++.....+.+++. +..++.
T Consensus 159 -----------~~~~~vDav~LDmp~P--W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 159 -----------IDEEDVDAVFLDLPDP--WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEA 218 (256)
T ss_pred -----------ccccccCEEEEcCCCh--HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhh
Confidence 1344899999876544 6778999999999999999888888888888888876 544444
No 104
>PHA03412 putative methyltransferase; Provisional
Probab=99.29 E-value=4.1e-11 Score=99.10 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=68.5
Q ss_pred CCCcEEEEcccccHHHHHHHhc----CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF----GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~----~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
.+.+|||+|||+|.+++.+++. +..+++++|+++.+++.|++|... +.+...+.....
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~-------~~~~~~D~~~~~----------- 110 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE-------ATWINADALTTE----------- 110 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC-------CEEEEcchhccc-----------
Confidence 4689999999999999987763 346899999999999999987531 334443332210
Q ss_pred cccccccccCCCCCCceeEEEeccchhH---------------HHHHHHHHHHhccCCeEEE
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP---------------LLQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~---------------~~~~l~~~~~~LkpgG~l~ 180 (225)
...+||+|++|||+.. ...++..+.+++++|+.|+
T Consensus 111 ------------~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~IL 160 (241)
T PHA03412 111 ------------FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFII 160 (241)
T ss_pred ------------ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 2458999999999742 3457888888777777644
No 105
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.28 E-value=6.2e-11 Score=97.54 Aligned_cols=99 Identities=23% Similarity=0.368 Sum_probs=73.6
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++++...+.. ..+.+...+....
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~--------------- 116 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVA-GNVEFEVNDLLSL--------------- 116 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECChhhC---------------
Confidence 357899999999999999988764 47999999999999999998766543 2345554443322
Q ss_pred ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEe
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.++||+|++...+.+ ...++.++.+.+++++++.+.
T Consensus 117 ----------~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 117 ----------CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred ----------CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 267999998655432 345688888888887766653
No 106
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=1e-10 Score=106.13 Aligned_cols=104 Identities=21% Similarity=0.229 Sum_probs=80.5
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
..+|.+|||+|||+|..+..+++. +..+++++|+++.+++.+++++...++. .+.+...+...+.
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~--~v~~~~~Da~~~~----------- 314 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT--IIETIEGDARSFS----------- 314 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC--eEEEEeCcccccc-----------
Confidence 346889999999999999887763 3468999999999999999999988875 3555555543321
Q ss_pred cccccccccCCCCCCceeEEEeccchh-------------------------HHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-------------------------~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+...||+|++++|.. ....++..+.+.|||||++++++.
T Consensus 315 ------------~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 315 ------------PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred ------------cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 345799999986631 123579999999999999998654
No 107
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=6.4e-11 Score=107.45 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=80.1
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+.++.+|||+|||+|..+..+++. +..+++++|+++.+++.+++|+..+++.+ +.+...+...+..
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~--v~~~~~D~~~~~~---------- 315 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN--IETKALDARKVHE---------- 315 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe--EEEEeCCcccccc----------
Confidence 346889999999999999998864 45789999999999999999999888753 5555555433210
Q ss_pred cccccccccCCCCCCceeEEEeccchhH-------------------------HHHHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP-------------------------LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~ 182 (225)
. ..+.||+|++++|... ...++..+.+.|||||.++++
T Consensus 316 ---------~--~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 316 ---------K--FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred ---------h--hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 0 1257999999887310 235789999999999999875
No 108
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.3e-11 Score=96.53 Aligned_cols=76 Identities=36% Similarity=0.524 Sum_probs=64.2
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
.|.+|+|+|||||.+++.++-+|+.+|+|+|+++++++.+++|..... ..+.+...+...+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~dv~~~---------------- 105 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---GDVEFVVADVSDF---------------- 105 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcchhhc----------------
Confidence 578999999999999999999999999999999999999999998733 3466666555443
Q ss_pred cccccCCCCCCceeEEEeccchhH
Q 041459 138 SHEIRGISETEKYDVVIANILLNP 161 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~ 161 (225)
..++|++++|||+..
T Consensus 106 ---------~~~~dtvimNPPFG~ 120 (198)
T COG2263 106 ---------RGKFDTVIMNPPFGS 120 (198)
T ss_pred ---------CCccceEEECCCCcc
Confidence 567999999999854
No 109
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.27 E-value=9e-11 Score=93.65 Aligned_cols=126 Identities=24% Similarity=0.258 Sum_probs=91.9
Q ss_pred CCCCchHHHHHHHHHhhcc----CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEE
Q 041459 39 TGEHATTKLCLLLLQSLIK----GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLH 114 (225)
Q Consensus 39 ~~~~~~~~~~~~~L~~~~~----~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~ 114 (225)
.+.+||+..+.+.|=+.+. .|.++||+++|||.+++.+++.|+.+++.+|.+..+....++|+...++.. ...+.
T Consensus 20 ~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~-~~~~~ 98 (187)
T COG0742 20 PGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEG-EARVL 98 (187)
T ss_pred CCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCcc-ceEEE
Confidence 4578999999887755543 478999999999999999999999999999999999999999998877552 33343
Q ss_pred EecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--H--HHHHHH--HHHhccCCeEEEEecc
Q 041459 115 LVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--L--LQLADH--IVSYAKPGAVVGISGI 184 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--~--~~~l~~--~~~~LkpgG~l~~~~~ 184 (225)
..+...+ +++......||+|+.+|||+. . ...+.. -..+|+|+|.+++..-
T Consensus 99 ~~da~~~-------------------L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 99 RNDALRA-------------------LKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred eecHHHH-------------------HHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 3332210 111112335999999999972 2 112222 4577999999999533
No 110
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.26 E-value=1.3e-10 Score=93.14 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=85.6
Q ss_pred CcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccc
Q 041459 60 ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSH 139 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (225)
.+++|+|||.|.++..|+.. ..+++++|+++.+++.|+++.... . .+.+...+...+
T Consensus 45 ~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~--~--~V~~~~~dvp~~------------------ 101 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL--P--HVEWIQADVPEF------------------ 101 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---S--SEEEEES-TTT-------------------
T ss_pred ceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC--C--CeEEEECcCCCC------------------
Confidence 68999999999999999887 467999999999999999987632 2 366666554332
Q ss_pred cccCCCCCCceeEEEeccchhH------HHHHHHHHHHhccCCeEEEEeccCC---------CcHHHHHHHHHhhhhhhc
Q 041459 140 EIRGISETEKYDVVIANILLNP------LLQLADHIVSYAKPGAVVGISGILS---------EQLPHIINRYSEFLEDIL 204 (225)
Q Consensus 140 ~~~~~~~~~~~DvIi~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~~~~~~~~~~~ 204 (225)
.+.++||+|++.-.++. +..++..+...|+|||.+++..... -..+.+.+.+.+.+..++
T Consensus 102 -----~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~ 176 (201)
T PF05401_consen 102 -----WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVE 176 (201)
T ss_dssp -------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEE
T ss_pred -----CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhhee
Confidence 16889999999765543 5567899999999999999854321 234456666666543333
Q ss_pred cc------ccCCceEEEeeeec
Q 041459 205 LS------EMDDWTCVSGTKKR 220 (225)
Q Consensus 205 ~~------~~~~w~~~~~~k~~ 220 (225)
.. ...+|....|+++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~ 198 (201)
T PF05401_consen 177 RVECRGGSPNEDCLLARFRNPV 198 (201)
T ss_dssp EEEEE-SSTTSEEEEEEEE--S
T ss_pred EEEEcCCCCCCceEeeeecCCc
Confidence 22 12346666666653
No 111
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=5.1e-11 Score=107.16 Aligned_cols=152 Identities=22% Similarity=0.206 Sum_probs=107.3
Q ss_pred ceeEEecccceecCCCCchHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
+..+.+.|+..|.+.. .....+..+..+.+ .+++++||+.||.|++++.+|+. ..+|+|+|+++.+++.|++|++.
T Consensus 260 ~~~~~~~~~sF~Q~N~-~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~ 337 (432)
T COG2265 260 GVSFQISPRSFFQVNP-AVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAA 337 (432)
T ss_pred ceEEEeCCCCceecCH-HHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHH
Confidence 5666777774444433 33344444333332 35689999999999999999955 57799999999999999999999
Q ss_pred cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
|++.| +.+...+...+.. .......+|+|+.+||......-+-.....++|..++|+||
T Consensus 338 n~i~N--~~f~~~~ae~~~~-------------------~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSC 396 (432)
T COG2265 338 NGIDN--VEFIAGDAEEFTP-------------------AWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSC 396 (432)
T ss_pred cCCCc--EEEEeCCHHHHhh-------------------hccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeC
Confidence 99985 6666665544321 00124578999999998766533333444668999999999
Q ss_pred cCCCcHHHHHHHHHhhh
Q 041459 184 ILSEQLPHIINRYSEFL 200 (225)
Q Consensus 184 ~~~~~~~~~~~~~~~~~ 200 (225)
....-..++......++
T Consensus 397 NP~TlaRDl~~L~~~gy 413 (432)
T COG2265 397 NPATLARDLAILASTGY 413 (432)
T ss_pred CHHHHHHHHHHHHhCCe
Confidence 98777777766555444
No 112
>PLN03075 nicotianamine synthase; Provisional
Probab=99.26 E-value=2e-10 Score=98.23 Aligned_cols=103 Identities=21% Similarity=0.272 Sum_probs=77.7
Q ss_pred CCCcEEEEcccccHH-HHHHH-h-cCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCcceEEEecCCCCCccccccccccc
Q 041459 58 GGELFLDYGTGSGIL-GIAAI-K-FGAAMSVGVDIDPQAIKSAHQNAAL-NNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~-~~~l~-~-~~~~~v~~vDi~~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++|+|+|||.|.+ ++.++ . .+..+++++|+++.+++.|++.+.. .++. +++.+...+......
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~-~rV~F~~~Da~~~~~---------- 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS-KRMFFHTADVMDVTE---------- 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc-CCcEEEECchhhccc----------
Confidence 678999999998844 44444 3 4667899999999999999999854 5654 457777665433210
Q ss_pred cccccccccCCCCCCceeEEEeccch----hHHHHHHHHHHHhccCCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILL----NPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
....||+|++.... ....++++++.+.|+|||++++..
T Consensus 192 ------------~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 192 ------------SLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ------------ccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 24679999998322 356789999999999999999853
No 113
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.26 E-value=1.5e-10 Score=94.63 Aligned_cols=102 Identities=21% Similarity=0.315 Sum_probs=77.1
Q ss_pred CCCcEEEEcccccHHHHHHHhcCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGA--AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~--~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++.+|||+|||+|..+..+++... .+++++|+++.+++.++++.. .. ..+.+...+....+.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~-~~i~~~~~d~~~~~~------------ 102 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LP-LNIEFIQADAEALPF------------ 102 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cC-CCceEEecchhcCCC------------
Confidence 678999999999999998877544 589999999999999988764 11 234455444433211
Q ss_pred cccccccCCCCCCceeEEEeccchh---HHHHHHHHHHHhccCCeEEEEeccC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
..+.||+|+++..++ .+..+++.+.+.|+|||.+++.+..
T Consensus 103 ----------~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 103 ----------EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred ----------CCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 356799999876554 3567899999999999999986553
No 114
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.25 E-value=1.4e-10 Score=95.10 Aligned_cols=119 Identities=17% Similarity=0.253 Sum_probs=91.1
Q ss_pred HHHHHHHHHhhccCCCcEEEEcccccHHHHHHHh-cC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCC
Q 041459 45 TKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK-FG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122 (225)
Q Consensus 45 ~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~-~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (225)
+-.++.+|... .++++|||+|++.|+-+++++. .+ ..+++++|+++++.+.|++|+...++.. ++.+..+ ++.+
T Consensus 47 ~g~~L~~L~~~-~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~-~i~~~~~-gdal- 122 (219)
T COG4122 47 TGALLRLLARL-SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDD-RIELLLG-GDAL- 122 (219)
T ss_pred HHHHHHHHHHh-cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEEec-CcHH-
Confidence 33334444333 2689999999999999999886 34 6789999999999999999999999984 4555553 2222
Q ss_pred ccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+.+... ..++||+||.+.-...+..+++.+.++|+|||++++-.+
T Consensus 123 ----~~l~~~-------------~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 123 ----DVLSRL-------------LDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred ----HHHHhc-------------cCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 111111 468899999998888899999999999999999998433
No 115
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.24 E-value=1.3e-10 Score=93.63 Aligned_cols=119 Identities=21% Similarity=0.278 Sum_probs=78.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|||+|||+|.++..+++. +..+++++|+++.+ ... .+.+...+..... ....+
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~--~i~~~~~d~~~~~-----~~~~l- 90 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIE--NVDFIRGDFTDEE-----VLNKI- 90 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCC--CceEEEeeCCChh-----HHHHH-
Confidence 457899999999999999887764 45679999999854 111 1333333332210 00000
Q ss_pred cccccccccCCCCCCceeEEEeccc--------hhH------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANIL--------LNP------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~--------~~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
....+.++||+|+++.. .++ ...++..+.+.|+|||.+++..+..+...++...++..
T Consensus 91 --------~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~ 162 (188)
T TIGR00438 91 --------RERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL 162 (188)
T ss_pred --------HHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh
Confidence 00014567999999743 112 25688999999999999999777777777777776655
Q ss_pred hh
Q 041459 200 LE 201 (225)
Q Consensus 200 ~~ 201 (225)
++
T Consensus 163 ~~ 164 (188)
T TIGR00438 163 FE 164 (188)
T ss_pred hc
Confidence 53
No 116
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.24 E-value=1.4e-10 Score=94.80 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=86.9
Q ss_pred CCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+.++|||+||++|+-++++++. + ..+++.+|+++...+.|++++...++. +++++..+++.. .+..+...
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-~~I~~~~gda~~-------~l~~l~~~ 116 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-DRIEVIEGDALE-------VLPELAND 116 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-GGEEEEES-HHH-------HHHHHHHT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-CcEEEEEeccHh-------hHHHHHhc
Confidence 6789999999999999998863 3 578999999999999999999999986 677777765421 12222111
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
. +.+.||+||.+..-..+..+++.+.++|+|||++++-..
T Consensus 117 ~---------~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 117 G---------EEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp T---------TTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred c---------CCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccc
Confidence 0 245899999999888899999999999999999998543
No 117
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.24 E-value=8.8e-11 Score=94.31 Aligned_cols=119 Identities=14% Similarity=0.180 Sum_probs=91.8
Q ss_pred CcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcce-EEEecCCCCCcccccccccccccccc
Q 041459 60 ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMK-LHLVPDRTFPASMNERVDGIVEDLSS 138 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (225)
..||++|||||..--+.--.+..+++++|.++.|-+.|.+.+..+. ..++. +.+.+++.++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k--~~~~~~fvva~ge~l~---------------- 139 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK--PLQVERFVVADGENLP---------------- 139 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc--CcceEEEEeechhcCc----------------
Confidence 4689999999977655444466789999999999999999887663 23344 6677776653
Q ss_pred ccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhhh
Q 041459 139 HEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLE 201 (225)
Q Consensus 139 ~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 201 (225)
++ ++.++|+|++...+ ....+.++++.++|+|||++++.+....+...+...++..++
T Consensus 140 ----~l-~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~e 200 (252)
T KOG4300|consen 140 ----QL-ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAE 200 (252)
T ss_pred ----cc-ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhc
Confidence 11 57899999998765 457788999999999999999988887777777777666544
No 118
>PHA03411 putative methyltransferase; Provisional
Probab=99.23 E-value=1.1e-10 Score=98.69 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=77.6
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+.+.+|||+|||+|.+++.+++. +..+++++|+++.+++.|+++.. .+.+...+...+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-------~v~~v~~D~~e~-------------- 121 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-------EAEWITSDVFEF-------------- 121 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-------CCEEEECchhhh--------------
Confidence 34679999999999999887664 45789999999999999987632 234444443222
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----------------------HHHHHHHHHHhccCCeEEEEeccC-------
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----------------------LLQLADHIVSYAKPGAVVGISGIL------- 185 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----------------------~~~~l~~~~~~LkpgG~l~~~~~~------- 185 (225)
....+||+|++|+|+.+ +...+.....+|+|+|.+++. ..
T Consensus 122 ---------~~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss~~~y~~ 191 (279)
T PHA03411 122 ---------ESNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSGRPYYDG 191 (279)
T ss_pred ---------cccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-Eeccccccc
Confidence 03457999999999754 134567778899999977652 21
Q ss_pred CCcHHHHHHHHHhh
Q 041459 186 SEQLPHIINRYSEF 199 (225)
Q Consensus 186 ~~~~~~~~~~~~~~ 199 (225)
.-...+..+.+++.
T Consensus 192 sl~~~~y~~~l~~~ 205 (279)
T PHA03411 192 TMKSNKYLKWSKQT 205 (279)
T ss_pred cCCHHHHHHHHHhc
Confidence 12345566666654
No 119
>PLN02476 O-methyltransferase
Probab=99.23 E-value=2.2e-10 Score=97.35 Aligned_cols=108 Identities=14% Similarity=0.256 Sum_probs=86.2
Q ss_pred CCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++++|||+|||+|+.++++++. ...+++++|.+++..+.|++++...++. +++++..++... .+..++.+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-~~I~li~GdA~e-------~L~~l~~~ 189 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-HKVNVKHGLAAE-------SLKSMIQN 189 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHH-------HHHHHHhc
Confidence 5789999999999999998863 3457999999999999999999999987 567777665422 11111100
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
...++||+||.+..-..+..+++.+.++|+|||++++-
T Consensus 190 ---------~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 190 ---------GEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred ---------ccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 02368999999999888999999999999999999984
No 120
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.23 E-value=2.1e-10 Score=93.76 Aligned_cols=97 Identities=16% Similarity=0.161 Sum_probs=70.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
..++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|+++.. . +.+...+... +.
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--~-----~~~~~~d~~~-~~----------- 101 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--N-----INIIQGSLFD-PF----------- 101 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--C-----CcEEEeeccC-CC-----------
Confidence 346789999999999999988875 56789999999999999987642 1 2233333221 11
Q ss_pred ccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
++++||+|+++..+++ ....+.++.+.+ ++.+++.++
T Consensus 102 -----------~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 102 -----------KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred -----------CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 5678999999887754 345677787776 456666554
No 121
>PRK04457 spermidine synthase; Provisional
Probab=99.22 E-value=2.7e-10 Score=96.51 Aligned_cols=136 Identities=15% Similarity=0.185 Sum_probs=92.2
Q ss_pred chHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCC
Q 041459 43 ATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 121 (225)
Q Consensus 43 ~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 121 (225)
++.+.++..+.. ..++.+|||+|||+|.++..+++ .+..+++++|+++.+++.|++++...+.. .++++...|+..+
T Consensus 52 ~y~~~m~~~l~~-~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~-~rv~v~~~Da~~~ 129 (262)
T PRK04457 52 AYTRAMMGFLLF-NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG-ERFEVIEADGAEY 129 (262)
T ss_pred HHHHHHHHHHhc-CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC-CceEEEECCHHHH
Confidence 345555444422 23568999999999999998765 46778999999999999999887544322 3566666554221
Q ss_pred CccccccccccccccccccccCCCCCCceeEEEeccchh-------HHHHHHHHHHHhccCCeEEEEeccCCC-cHHHHH
Q 041459 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGISGILSE-QLPHII 193 (225)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~ 193 (225)
+. . ...+||+|+++..-. ...++++.+.+.|+|||++++..+..+ ......
T Consensus 130 -----------l~--------~--~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l 188 (262)
T PRK04457 130 -----------IA--------V--HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYL 188 (262)
T ss_pred -----------HH--------h--CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHH
Confidence 00 0 245799999864211 126889999999999999998644332 345555
Q ss_pred HHHHhhhh
Q 041459 194 NRYSEFLE 201 (225)
Q Consensus 194 ~~~~~~~~ 201 (225)
+.++..|.
T Consensus 189 ~~l~~~F~ 196 (262)
T PRK04457 189 ERLESSFE 196 (262)
T ss_pred HHHHHhcC
Confidence 66666564
No 122
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.22 E-value=2.3e-10 Score=90.54 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=73.9
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++... . .++.+...+...+..
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~--~--~~v~ii~~D~~~~~~------------- 73 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA--A--DNLTVIHGDALKFDL------------- 73 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc--C--CCEEEEECchhcCCc-------------
Confidence 45789999999999999998887 46799999999999999988743 1 235566555443311
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHh--ccCCeEEEEe
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSY--AKPGAVVGIS 182 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~--LkpgG~l~~~ 182 (225)
+...||.|++|+|++....++..+.+. +.++|++++.
T Consensus 74 ---------~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 74 ---------PKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred ---------cccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEE
Confidence 334689999999998766666666644 4478888773
No 123
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.22 E-value=3.1e-10 Score=93.34 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=70.4
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCC-------------CCcceEEEecCCCCCc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG-------------PKKMKLHLVPDRTFPA 123 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 123 (225)
.++.+|||+|||.|..++++++.|.. |+|+|+|+.+++.+.+. +++. ...+.+...+...++.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~-V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHR-VLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCe-EEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 36789999999999999999998765 99999999999986432 2221 1123444444332210
Q ss_pred cccccccccccccccccccCCCCCCceeEEEeccc-----hhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
...+.||.|+-... ......+++.+.++|||||++++.++
T Consensus 109 ---------------------~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 109 ---------------------ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred ---------------------ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 01345787765433 33456789999999999998666544
No 124
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.21 E-value=8.9e-11 Score=103.51 Aligned_cols=156 Identities=12% Similarity=0.043 Sum_probs=95.9
Q ss_pred eeEEecccceecCCCCchHHHHHHHHHhhcc-CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIK-GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 27 ~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~-~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
..+.++|+..|+.... ....+...+.+... .+.+|||+|||+|.+++.+++.. .+++|+|+++.+++.|++|+..++
T Consensus 166 ~~~~~~~~~F~Q~N~~-~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~ 243 (353)
T TIGR02143 166 FIYRQVENSFTQPNAA-VNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANN 243 (353)
T ss_pred EEEEECCCCcccCCHH-HHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcC
Confidence 4566677665544333 33333333333332 24579999999999999888764 589999999999999999999998
Q ss_pred CCCCcceEEEecCCCCCccccccccccccccccccccCCCC-CCceeEEEeccchhHH-HHHHHHHHHhccCCeEEEEec
Q 041459 106 IGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISE-TEKYDVVIANILLNPL-LQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DvIi~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+.+ +.+...+...+ ...........-...... ...||+|+.+||.... ..+++.+. +|++++|++|
T Consensus 244 ~~~--v~~~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 244 IDN--VQIIRMSAEEF-------TQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred CCc--EEEEEcCHHHH-------HHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHH---cCCcEEEEEc
Confidence 753 55555443221 000000000000000000 1248999999996543 34445444 4799999999
Q ss_pred cCCCcHHHHHHHH
Q 041459 184 ILSEQLPHIINRY 196 (225)
Q Consensus 184 ~~~~~~~~~~~~~ 196 (225)
.......++....
T Consensus 312 ~p~tlaRDl~~L~ 324 (353)
T TIGR02143 312 NPETLKANLEQLS 324 (353)
T ss_pred CHHHHHHHHHHHh
Confidence 9877777776554
No 125
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.21 E-value=6.2e-11 Score=97.08 Aligned_cols=107 Identities=23% Similarity=0.326 Sum_probs=76.4
Q ss_pred HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCc
Q 041459 46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPA 123 (225)
Q Consensus 46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (225)
..++++|. +++|++|||+|||+|+.+..++.. + ...++++|+++...+.|++++...+..+ +.+...++...
T Consensus 62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n--v~~~~gdg~~g-- 135 (209)
T PF01135_consen 62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN--VEVVVGDGSEG-- 135 (209)
T ss_dssp HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS--EEEEES-GGGT--
T ss_pred HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc--eeEEEcchhhc--
Confidence 33444443 678999999999999999998875 3 3469999999999999999999888753 66666654321
Q ss_pred cccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459 124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
+.....||.|+++...... -..+.+.||+||++++
T Consensus 136 --------------------~~~~apfD~I~v~~a~~~i---p~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 136 --------------------WPEEAPFDRIIVTAAVPEI---PEALLEQLKPGGRLVA 170 (209)
T ss_dssp --------------------TGGG-SEEEEEESSBBSS-----HHHHHTEEEEEEEEE
T ss_pred --------------------cccCCCcCEEEEeeccchH---HHHHHHhcCCCcEEEE
Confidence 1145689999997766432 2356678999999988
No 126
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.20 E-value=6.9e-11 Score=100.23 Aligned_cols=124 Identities=12% Similarity=0.116 Sum_probs=70.9
Q ss_pred CCCcEEEEcccccH----HHHHHHhc-C-----CCeEEEEeCCHHHHHHHHHHHHh----cCCCCCcceEEEecCCCCCc
Q 041459 58 GGELFLDYGTGSGI----LGIAAIKF-G-----AAMSVGVDIDPQAIKSAHQNAAL----NNIGPKKMKLHLVPDRTFPA 123 (225)
Q Consensus 58 ~~~~vlDiGcGtG~----~~~~l~~~-~-----~~~v~~vDi~~~~l~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~ 123 (225)
++.+|||+|||||. +++.+++. + ..+|+|+|+|+.|++.|++++.. .++......-.+..... ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~-~~ 177 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVED-KY 177 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCC-eE
Confidence 35799999999994 55555553 2 35799999999999999986521 11110000000000000 00
Q ss_pred cccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEe
Q 041459 124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.+.+.+...+.+...|......+.++||+|+|...+.+ ...++..+.+.|+|||.+++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 01111111122211111111113678999999766543 346899999999999999984
No 127
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.20 E-value=2.1e-10 Score=99.73 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=110.7
Q ss_pred CCCCCCCcceeEEeccc-ceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHH
Q 041459 18 WSTPPDVQATNIILNPG-LAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKS 96 (225)
Q Consensus 18 ~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~ 96 (225)
-+|.+++.++.+.+|+. ..|+.+...- + ..+.....+|.+|+|++||-|.+++.+|+.+..+|+++|++|.+++.
T Consensus 151 teTihrE~G~~f~vD~~Kv~Fsprl~~E-R---~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~ 226 (341)
T COG2520 151 TETIHRENGCRFKVDVAKVYFSPRLSTE-R---ARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEY 226 (341)
T ss_pred ceEEEecCCEEEEEchHHeEECCCchHH-H---HHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHH
Confidence 35679999999999999 5665554222 2 22334556799999999999999999999988889999999999999
Q ss_pred HHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC
Q 041459 97 AHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG 176 (225)
Q Consensus 97 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg 176 (225)
.++|+..|++.+ .+...++|+..... ..+.+|-|+++.|.. -..++..+.+.+++|
T Consensus 227 L~eNi~LN~v~~-~v~~i~gD~rev~~----------------------~~~~aDrIim~~p~~-a~~fl~~A~~~~k~~ 282 (341)
T COG2520 227 LKENIRLNKVEG-RVEPILGDAREVAP----------------------ELGVADRIIMGLPKS-AHEFLPLALELLKDG 282 (341)
T ss_pred HHHHHHhcCccc-eeeEEeccHHHhhh----------------------ccccCCEEEeCCCCc-chhhHHHHHHHhhcC
Confidence 999999999883 46677777655421 237799999987753 234566777888999
Q ss_pred eEEEEeccCCCcH
Q 041459 177 AVVGISGILSEQL 189 (225)
Q Consensus 177 G~l~~~~~~~~~~ 189 (225)
|++-+..+..++.
T Consensus 283 g~iHyy~~~~e~~ 295 (341)
T COG2520 283 GIIHYYEFVPEDD 295 (341)
T ss_pred cEEEEEeccchhh
Confidence 9998876665444
No 128
>PLN02366 spermidine synthase
Probab=99.20 E-value=1.6e-09 Score=93.63 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=97.7
Q ss_pred cCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhc--CCCCCcceEEEecCCCCCccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
..+++||++|||.|.++..+++.+ ..+++.+|+++.+++.|++.+... ++...++++...|+..+ +
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~-----------l 158 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEF-----------L 158 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHH-----------H
Confidence 357899999999999999988864 578999999999999999987542 23445677776665322 1
Q ss_pred cccccccccCCCCCCceeEEEeccchh-------HHHHHHHHHHHhccCCeEEEEecc---C-CCcHHHHHHHHHhhhh-
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGISGI---L-SEQLPHIINRYSEFLE- 201 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~---~-~~~~~~~~~~~~~~~~- 201 (225)
.. . +.++||+|+++.... ...++++.+.+.|+|||+++...- . .+....+.+.+++.|.
T Consensus 159 ~~--------~-~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~ 229 (308)
T PLN02366 159 KN--------A-PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKG 229 (308)
T ss_pred hh--------c-cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCC
Confidence 00 0 256799999975431 134678999999999999987322 1 2334455556665552
Q ss_pred hhc-------ccccCCceEEEeeee
Q 041459 202 DIL-------LSEMDDWTCVSGTKK 219 (225)
Q Consensus 202 ~~~-------~~~~~~w~~~~~~k~ 219 (225)
.+. ....|.|.-..+.|+
T Consensus 230 ~v~~~~~~vPsy~~g~w~f~~as~~ 254 (308)
T PLN02366 230 SVNYAWTTVPTYPSGVIGFVLCSKE 254 (308)
T ss_pred ceeEEEecCCCcCCCceEEEEEECC
Confidence 221 233478987777765
No 129
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.20 E-value=9.3e-11 Score=103.73 Aligned_cols=152 Identities=12% Similarity=0.059 Sum_probs=94.7
Q ss_pred eeEEecccceecCCCCchHHHHHHHHHhhcc-CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIK-GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 27 ~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~-~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
..+.++|+..|.... .....+...+..... .+.++||++||+|.+++.+++. ..+++|+|+++.+++.|++|+..++
T Consensus 175 ~~~~~~~~sF~Q~N~-~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~ 252 (362)
T PRK05031 175 FIYRQVENSFTQPNA-AVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANG 252 (362)
T ss_pred EEEEeCCCCeeccCH-HHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhC
Confidence 456666766555543 333444444433332 2357999999999999987775 4689999999999999999999888
Q ss_pred CCCCcceEEEecCCCCCccccccccccccccccccccCCC----CCCceeEEEeccchhHH-HHHHHHHHHhccCCeEEE
Q 041459 106 IGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGIS----ETEKYDVVIANILLNPL-LQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~DvIi~~~~~~~~-~~~l~~~~~~LkpgG~l~ 180 (225)
+. ++.+...+...+ +..+.... ...... ...+||+|+.+||.... ..+++.+. ++++++|
T Consensus 253 ~~--~v~~~~~d~~~~-------l~~~~~~~---~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~---~~~~ivy 317 (362)
T PRK05031 253 ID--NVQIIRMSAEEF-------TQAMNGVR---EFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQ---AYERILY 317 (362)
T ss_pred CC--cEEEEECCHHHH-------HHHHhhcc---cccccccccccCCCCCEEEECCCCCCCcHHHHHHHH---ccCCEEE
Confidence 75 355555444221 10000000 000000 02258999999997543 34445444 3799999
Q ss_pred EeccCCCcHHHHHHH
Q 041459 181 ISGILSEQLPHIINR 195 (225)
Q Consensus 181 ~~~~~~~~~~~~~~~ 195 (225)
++|....-..++...
T Consensus 318 vSC~p~tlarDl~~L 332 (362)
T PRK05031 318 ISCNPETLCENLETL 332 (362)
T ss_pred EEeCHHHHHHHHHHH
Confidence 999885555555543
No 130
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.2e-10 Score=92.82 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=78.9
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++++++|||||||+|+.+..+++... +|+++|+.++..+.|++|+...++.+ +.+.++|+..-
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~n--V~v~~gDG~~G-------------- 132 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYEN--VTVRHGDGSKG-------------- 132 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCc--eEEEECCcccC--------------
Confidence 55899999999999999999999744 79999999999999999999999865 77888776432
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
+.....||.|++........ +.+.+.||+||++++-
T Consensus 133 --------~~~~aPyD~I~Vtaaa~~vP---~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 133 --------WPEEAPYDRIIVTAAAPEVP---EALLDQLKPGGRLVIP 168 (209)
T ss_pred --------CCCCCCcCEEEEeeccCCCC---HHHHHhcccCCEEEEE
Confidence 12567899999865443322 2455689999999873
No 131
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.20 E-value=9.7e-11 Score=94.70 Aligned_cols=96 Identities=22% Similarity=0.279 Sum_probs=77.1
Q ss_pred cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
....+|.|+|||+|..+..+++ .+.+.++|+|.|+.|++.|+..... ..+...+.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~-------~~f~~aDl----------------- 84 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPD-------ATFEEADL----------------- 84 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCC-------CceecccH-----------------
Confidence 3568999999999999998876 5889999999999999999766432 22333333
Q ss_pred cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEe
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~ 182 (225)
+.+.+....|++++|..+++ ..+++..+...|.|||++.+.
T Consensus 85 ------~~w~p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 85 ------RTWKPEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred ------hhcCCCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence 23347788999999999876 457899999999999999985
No 132
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.19 E-value=1.4e-10 Score=91.42 Aligned_cols=137 Identities=22% Similarity=0.322 Sum_probs=92.8
Q ss_pred ceecCCCCchHHHHHHHHHhhcc-----CC-CcEEEEcccccHHHHHHHhcCCC-eEEEEeCCHHHHHHHHHHHHhcCCC
Q 041459 35 LAFGTGEHATTKLCLLLLQSLIK-----GG-ELFLDYGTGSGILGIAAIKFGAA-MSVGVDIDPQAIKSAHQNAALNNIG 107 (225)
Q Consensus 35 ~~f~~~~~~~~~~~~~~L~~~~~-----~~-~~vlDiGcGtG~~~~~l~~~~~~-~v~~vDi~~~~l~~a~~~~~~~~~~ 107 (225)
..|+ ......+..+|..... +. .+|||+|||+|.+...|++.+.. ..+|+|.|+.+++.|+..+...+++
T Consensus 41 vWFg---~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~ 117 (227)
T KOG1271|consen 41 VWFG---EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS 117 (227)
T ss_pred eecC---CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC
Confidence 5665 3345566677755422 33 39999999999999999987654 3999999999999999988888887
Q ss_pred CCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-----------HHHHHHHHHHHhccCC
Q 041459 108 PKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----------PLLQLADHIVSYAKPG 176 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-----------~~~~~l~~~~~~Lkpg 176 (225)
+ .+++...+.....+ ...+||+|.--..++ -+.-++..+.+.|+||
T Consensus 118 n-~I~f~q~DI~~~~~----------------------~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~ 174 (227)
T KOG1271|consen 118 N-EIRFQQLDITDPDF----------------------LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPG 174 (227)
T ss_pred c-ceeEEEeeccCCcc----------------------cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCC
Confidence 4 57776665433211 244555554422221 1244678888999999
Q ss_pred eEEEE-eccCCCcHHHHHHHHHhh
Q 041459 177 AVVGI-SGILSEQLPHIINRYSEF 199 (225)
Q Consensus 177 G~l~~-~~~~~~~~~~~~~~~~~~ 199 (225)
|++++ +|..+ ..++.+.+...
T Consensus 175 gifvItSCN~T--~dELv~~f~~~ 196 (227)
T KOG1271|consen 175 GIFVITSCNFT--KDELVEEFENF 196 (227)
T ss_pred cEEEEEecCcc--HHHHHHHHhcC
Confidence 99887 45544 45555555544
No 133
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.19 E-value=2.9e-10 Score=98.26 Aligned_cols=102 Identities=22% Similarity=0.243 Sum_probs=77.6
Q ss_pred cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|.+++.+++ .+..+++++|. +.+++.+++++...++. +++++...+....
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~-~rv~~~~~d~~~~-------------- 211 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-DRMRGIAVDIYKE-------------- 211 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc-ceEEEEecCccCC--------------
Confidence 4568999999999999998776 46678999997 78999999999888775 3455555443221
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+...+|+|++...++. ...+++++++.|+|||.+++.++
T Consensus 212 ----------~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 212 ----------SYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred ----------CCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 1224698877655442 34689999999999999998765
No 134
>PRK06202 hypothetical protein; Provisional
Probab=99.18 E-value=1.5e-10 Score=96.06 Aligned_cols=100 Identities=26% Similarity=0.386 Sum_probs=71.2
Q ss_pred CCCcEEEEcccccHHHHHHHhc----C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF----G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~----~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
++.+|||+|||+|.++..+++. + ..+++|+|+++.|++.|+++....+ +.+...+.+.++.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-----~~~~~~~~~~l~~--------- 125 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG-----VTFRQAVSDELVA--------- 125 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC-----CeEEEEecccccc---------
Confidence 5679999999999998887642 2 3589999999999999988754333 2344443333311
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEEEeccCC
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~~ 186 (225)
.+++||+|+++..+++. ..++.++.+.++ |.+++.++..
T Consensus 126 -------------~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 126 -------------EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred -------------cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 35689999999887653 457888998887 5555555544
No 135
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.18 E-value=5.9e-10 Score=96.26 Aligned_cols=119 Identities=13% Similarity=0.021 Sum_probs=75.3
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+.++.+|||+|||||..+..+++.. ..+|+++|+|+.|++.|++++.... ....+....++..... ......
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i~gD~~~~~----~~~~~~- 134 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-PQLEVHGICADFTQPL----ALPPEP- 134 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEEEEcccchh----hhhccc-
Confidence 4467899999999999999887653 4679999999999999998876432 2122333444432210 000000
Q ss_pred cccccccccCCCCCCceeEEEeccc-----hhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHH
Q 041459 134 EDLSSHEIRGISETEKYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVGISGILSEQLPHI 192 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 192 (225)
......++++... ......+++.+.+.|+|||.+++......+...+
T Consensus 135 ------------~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~~~ 186 (301)
T TIGR03438 135 ------------AAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPAVL 186 (301)
T ss_pred ------------ccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCCHHHH
Confidence 0112334443322 2335678999999999999999865544444433
No 136
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=8.7e-10 Score=86.91 Aligned_cols=115 Identities=20% Similarity=0.311 Sum_probs=87.8
Q ss_pred CCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 59 GELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
...++|+|||+|..+-.+++. +...+.+.|++|.+++..++.+..|+...+ ....+ ...+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~---~V~td----------l~~~----- 105 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHID---VVRTD----------LLSG----- 105 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccc---eeehh----------HHhh-----
Confidence 678999999999999988764 567789999999999999998887775422 22211 1111
Q ss_pred ccccccCCCCCCceeEEEeccchhH------------------------HHHHHHHHHHhccCCeEEEEeccCCCcHHHH
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP------------------------LLQLADHIVSYAKPGAVVGISGILSEQLPHI 192 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 192 (225)
+ ..++.|+++.|+||-+ ...++..+-..|.|.|.+|+.....+...++
T Consensus 106 -------l-~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei 177 (209)
T KOG3191|consen 106 -------L-RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEI 177 (209)
T ss_pred -------h-ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHH
Confidence 1 3488999999999622 2456777888999999999988888888888
Q ss_pred HHHHHhh
Q 041459 193 INRYSEF 199 (225)
Q Consensus 193 ~~~~~~~ 199 (225)
.+.+++.
T Consensus 178 ~k~l~~~ 184 (209)
T KOG3191|consen 178 LKILEKK 184 (209)
T ss_pred HHHHhhc
Confidence 8876654
No 137
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.17 E-value=9.8e-10 Score=90.37 Aligned_cols=104 Identities=23% Similarity=0.315 Sum_probs=77.7
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+.. .+.+...+....+.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~-------------- 107 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLL--KIEYRCTSVEDLAE-------------- 107 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEeCCHHHhhc--------------
Confidence 478999999999999998887654 5999999999999999988766642 23444333222210
Q ss_pred cccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459 138 SHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
...++||+|+++..+++ ...++..+.+.|++||.++++...
T Consensus 108 -------~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 108 -------KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred -------CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 02368999999776654 567889999999999999987543
No 138
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.17 E-value=6.7e-10 Score=88.92 Aligned_cols=104 Identities=24% Similarity=0.327 Sum_probs=71.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCC---------eEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAA---------MSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASM 125 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~---------~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (225)
.+++..|+|..||+|++.+.++.. ... .++|.|+++.+++.|+.|+...++. ..+.+...+...++.
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~-~~i~~~~~D~~~l~~-- 102 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE-DYIDFIQWDARELPL-- 102 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C-GGEEEEE--GGGGGG--
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC-CceEEEecchhhccc--
Confidence 457889999999999999987653 222 3899999999999999999988876 445555544433310
Q ss_pred cccccccccccccccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEe
Q 041459 126 NERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~ 182 (225)
..+.+|+|++|+|+.. +..+++.+.+.+++..+++++
T Consensus 103 --------------------~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 103 --------------------PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp --------------------TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred --------------------ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 4678999999999742 456788999999995555443
No 139
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.17 E-value=3.1e-10 Score=103.76 Aligned_cols=101 Identities=21% Similarity=0.232 Sum_probs=74.7
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||+|.++..+++.. .+++|+|+++.+++.+++.. +.. ..+.+...+...... .+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~---~~~-~~i~~~~~d~~~~~~-------~~----- 99 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN---GHY-KNVKFMCADVTSPDL-------NI----- 99 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh---ccC-CceEEEEeccccccc-------CC-----
Confidence 56799999999999999988874 57999999999998876432 211 234555544421100 00
Q ss_pred cccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEec
Q 041459 138 SHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+.++||+|+++.++++ ...++..+.+.|||||++++.+
T Consensus 100 --------~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 100 --------SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred --------CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 4578999999988765 4578999999999999999864
No 140
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.17 E-value=3.2e-10 Score=98.13 Aligned_cols=104 Identities=24% Similarity=0.304 Sum_probs=83.8
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe-cCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV-PDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 134 (225)
+++|..|||-.||||++.+.+...|.. ++|+|++..|++-|+.|+...++.. ..+... ++..++.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~~-viG~Did~~mv~gak~Nl~~y~i~~--~~~~~~~Da~~lpl----------- 260 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGAR-VIGSDIDERMVRGAKINLEYYGIED--YPVLKVLDATNLPL----------- 260 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCce-EeecchHHHHHhhhhhhhhhhCcCc--eeEEEecccccCCC-----------
Confidence 668999999999999999999888765 8999999999999999999887652 333333 5555432
Q ss_pred ccccccccCCCCCCceeEEEeccchhH------------HHHHHHHHHHhccCCeEEEEecc
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNP------------LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+..++|.|+++||+.- +.++++.+.+.||+||++++...
T Consensus 261 -----------~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 261 -----------RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred -----------CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 3447999999999732 56789999999999999988644
No 141
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.16 E-value=7.5e-10 Score=91.36 Aligned_cols=100 Identities=12% Similarity=0.090 Sum_probs=69.1
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCC-------------CCcceEEEecCCCCCc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG-------------PKKMKLHLVPDRTFPA 123 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 123 (225)
.++.+|||+|||.|..++++++.|.. |+|+|+|+.+++.+.. .+++. ...+.+...+...+..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~-V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHE-VLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCe-EEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCc
Confidence 35789999999999999999998765 9999999999998743 22222 1233344433322210
Q ss_pred cccccccccccccccccccCCCCCCceeEEEec-----cchhHHHHHHHHHHHhccCCeEEEE
Q 041459 124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIAN-----ILLNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~-----~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
.....||.|+-. .+......++..+.++|||||++++
T Consensus 112 ---------------------~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 112 ---------------------ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ---------------------ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 023478888853 3334457889999999999987444
No 142
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.16 E-value=1.7e-09 Score=92.03 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=92.3
Q ss_pred CCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcC--CCCCcceEEEecCCCCCcccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNN--IGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.+++||++|||+|.++..+++.+ ..+++++|+++.+++.|++.+.... +...++.+...++..+ +.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~-----------l~ 140 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF-----------LA 140 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH-----------HH
Confidence 45799999999999998877754 6789999999999999998875432 2223444444333111 00
Q ss_pred ccccccccCCCCCCceeEEEeccch--hH-----HHHHHHHHHHhccCCeEEEEeccCC----CcHHHHHHHHHhhhhhh
Q 041459 135 DLSSHEIRGISETEKYDVVIANILL--NP-----LLQLADHIVSYAKPGAVVGISGILS----EQLPHIINRYSEFLEDI 203 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~--~~-----~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~~~~~ 203 (225)
. ..++||+|+++.+. .. ..++++.+.+.|+|||++++..... .....+.+.++..|..+
T Consensus 141 --------~--~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v 210 (270)
T TIGR00417 141 --------D--TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPIT 210 (270)
T ss_pred --------h--CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCe
Confidence 0 24689999997652 11 3567889999999999999852211 12233344455545444
Q ss_pred cc-------cccCCceEEEeee
Q 041459 204 LL-------SEMDDWTCVSGTK 218 (225)
Q Consensus 204 ~~-------~~~~~w~~~~~~k 218 (225)
.. ...+.|.-+.+.|
T Consensus 211 ~~~~~~vp~~~~g~~~~~~as~ 232 (270)
T TIGR00417 211 EYYTANIPTYPSGLWTFTIGSK 232 (270)
T ss_pred EEEEEEcCccccchhEEEEEEC
Confidence 32 2347798888877
No 143
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.16 E-value=6.1e-10 Score=99.05 Aligned_cols=126 Identities=23% Similarity=0.302 Sum_probs=89.0
Q ss_pred eEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 041459 28 NIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNI 106 (225)
Q Consensus 28 ~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~ 106 (225)
.+..+|.+.+ .+.....+.+.+... .++.+|||++||+|.+++.++. .+..+|+++|+++.+++.+++|+..|++
T Consensus 31 ~vFyqp~~~~---nrdl~~~v~~~~~~~-~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~ 106 (382)
T PRK04338 31 PVFYNPRMEL---NRDISVLVLRAFGPK-LPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL 106 (382)
T ss_pred CeeeCccccc---hhhHHHHHHHHHHhh-cCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 4566777665 233334443433211 1246899999999999998765 5667899999999999999999999987
Q ss_pred CCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 107 GPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.+ +.+...+...+ + . ....||+|+++|+ .....++..+.+.+++||+++++
T Consensus 107 ~~--~~v~~~Da~~~-----------l--------~---~~~~fD~V~lDP~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 107 EN--EKVFNKDANAL-----------L--------H---EERKFDVVDIDPF-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred Cc--eEEEhhhHHHH-----------H--------h---hcCCCCEEEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 63 33444333211 0 0 1356999999986 44567788878889999999997
No 144
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.15 E-value=7.5e-10 Score=92.69 Aligned_cols=127 Identities=20% Similarity=0.213 Sum_probs=92.7
Q ss_pred ccCCCcEEEEcccccHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIK--FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~--~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+.+|.+|+|.|+|+|.++..+++ .+..+++..|+.+...+.|++|+..+++. +.+.+...|...- ++
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~-~~v~~~~~Dv~~~---------g~- 106 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD-DNVTVHHRDVCEE---------GF- 106 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC-TTEEEEES-GGCG------------
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC-CCceeEecceecc---------cc-
Confidence 66899999999999999999887 36789999999999999999999999986 4577776654211 00
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhc-cCCeEEEEeccCCCcHHHHHHHHHhh-hhhhc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYA-KPGAVVGISGILSEQLPHIINRYSEF-LEDIL 204 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 204 (225)
. -.....+|.||.+.|-. -..+..+.+.| |+||++++-...-++.......+++. |..++
T Consensus 107 --------~-~~~~~~~DavfLDlp~P--w~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 107 --------D-EELESDFDAVFLDLPDP--WEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIE 168 (247)
T ss_dssp --------S-TT-TTSEEEEEEESSSG--GGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEE
T ss_pred --------c-ccccCcccEEEEeCCCH--HHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeE
Confidence 0 00236799999887655 34577888999 89999998777777777777777774 54443
No 145
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.15 E-value=6.3e-10 Score=92.24 Aligned_cols=104 Identities=24% Similarity=0.344 Sum_probs=77.2
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.|+++....+.. +.+...+....+.
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~------------- 109 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGLK---IDYRQTTAEELAA------------- 109 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCCc---eEEEecCHHHhhh-------------
Confidence 367899999999999998888765 46999999999999999887765542 3333322221100
Q ss_pred ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
...+.||+|+++..+++ ...+++.+.++|+|||.++++...
T Consensus 110 --------~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 110 --------EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred --------hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 03468999999766543 567889999999999999987553
No 146
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.14 E-value=5e-10 Score=90.86 Aligned_cols=118 Identities=17% Similarity=0.225 Sum_probs=84.5
Q ss_pred CcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459 60 ELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS 138 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (225)
..+||+|||.|.+.+.+|+ .+...++|+|+....+..|.+.+...++.| +.+...++..+ +
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N--v~~~~~da~~~-------l--------- 80 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN--VRFLRGDAREL-------L--------- 80 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS--EEEEES-CTTH-------H---------
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc--eEEEEccHHHH-------H---------
Confidence 3899999999999998775 688899999999999999999998888875 66665555432 1
Q ss_pred ccccCCCCCCceeEEEeccchhHH-----------HHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 139 HEIRGISETEKYDVVIANILLNPL-----------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 139 ~~~~~~~~~~~~DvIi~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
+.+.+++++|-|+.++|-.++ ..+++.+.+.|+|||.+.+.+...+......+.+.+
T Consensus 81 ---~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 81 ---RRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp ---HHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred ---hhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 112256889999999886442 468999999999999999966555455555555554
No 147
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.14 E-value=9.6e-10 Score=95.61 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=74.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|||+|||+|.++..+++.. ...++++|+++.+++.|++++..++..+ +.+...+.....
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n--V~~i~gD~~~~~----------- 144 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN--VIFVCGDGYYGV----------- 144 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc--EEEEeCChhhcc-----------
Confidence 4578899999999999999988753 2469999999999999999998887653 555544432210
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.....||+|+++...... ...+.+.|+|||.+++.
T Consensus 145 -----------~~~~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 145 -----------PEFAPYDVIFVTVGVDEV---PETWFTQLKEGGRVIVP 179 (322)
T ss_pred -----------cccCCccEEEECCchHHh---HHHHHHhcCCCCEEEEE
Confidence 023569999997654433 34567889999998874
No 148
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.14 E-value=1e-09 Score=95.26 Aligned_cols=110 Identities=23% Similarity=0.183 Sum_probs=70.5
Q ss_pred hHHHHHHHHHhh-ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCcceEEEecCC
Q 041459 44 TTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG---PKKMKLHLVPDR 119 (225)
Q Consensus 44 ~~~~~~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~---~~~~~~~~~~~~ 119 (225)
+.+.++.++... ..++.+|||+|||+|.+++.+++.+ .+++|+|+|+.|++.|+++....... ...+.+...+..
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 334444444332 1247899999999999999999875 46999999999999999987654211 112333333321
Q ss_pred CCCccccccccccccccccccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEE
Q 041459 120 TFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~ 180 (225)
. ..++||+|+|...+.++ ..++..+.+ +.++|.++
T Consensus 208 ~-------------------------l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 208 S-------------------------LSGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred h-------------------------cCCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 1 24679999987665432 234555553 45665544
No 149
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.14 E-value=2.2e-10 Score=98.70 Aligned_cols=101 Identities=19% Similarity=0.188 Sum_probs=77.2
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++++|||+|||||.+++.+++.|+.+++|+|-+. +.+.|++.+..|++. +.+++..+..+.. .+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~-~ii~vi~gkvEdi---------~L---- 123 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLE-DVITVIKGKVEDI---------EL---- 123 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCcc-ceEEEeecceEEE---------ec----
Confidence 36899999999999999999999999999999877 559999999999987 4455554443322 11
Q ss_pred ccccccCCCCCCceeEEEeccchhH-----H-HHHHHHHHHhccCCeEEEE
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP-----L-LQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~-~~~l~~~~~~LkpgG~l~~ 181 (225)
|.+++|+|++.++-+. + ..++-.=-++|+|||.++-
T Consensus 124 ---------P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 124 ---------PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred ---------CccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 5689999999877543 2 2233334488999999984
No 150
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.13 E-value=1e-09 Score=90.51 Aligned_cols=97 Identities=23% Similarity=0.326 Sum_probs=69.7
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++.+. .++|+|+++.+++.|+++....+.. ..+.+...+...
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~---------------- 123 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLA-GNITFEVGDLES---------------- 123 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCc-cCcEEEEcCchh----------------
Confidence 3578999999999999999888764 4999999999999999988766653 234555443211
Q ss_pred ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEE
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~ 180 (225)
..+.||+|++...+++ ...++..+.+.+++++++.
T Consensus 124 ---------~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 124 ---------LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred ---------ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 3467999999766533 3456777777665544443
No 151
>PTZ00146 fibrillarin; Provisional
Probab=99.13 E-value=3e-09 Score=90.80 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=86.9
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|||+|||+|.++.+++.. + ..+|+++|+++.+++.....+... . ++.....+.... ... ..
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~--NI~~I~~Da~~p-----~~y-~~- 198 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--P--NIVPIIEDARYP-----QKY-RM- 198 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--C--CCEEEECCccCh-----hhh-hc-
Confidence 568899999999999999999875 2 468999999998664444333211 1 233444433211 000 00
Q ss_pred cccccccccCCCCCCceeEEEeccchhH-HHHHHHHHHHhccCCeEEEEeccC-----CCcHHHH----HHHHHhh-hhh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP-LLQLADHIVSYAKPGAVVGISGIL-----SEQLPHI----INRYSEF-LED 202 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~~~~----~~~~~~~-~~~ 202 (225)
....+|+|+++....+ ...++.++.+.|||||.+++.... .....++ .+.+++. |+.
T Consensus 199 ------------~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~ 266 (293)
T PTZ00146 199 ------------LVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKP 266 (293)
T ss_pred ------------ccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCce
Confidence 2347999999875433 345567889999999999984111 1122222 2445544 554
Q ss_pred hcccccC----CceEEEeeeecccc
Q 041459 203 ILLSEMD----DWTCVSGTKKRAKE 223 (225)
Q Consensus 203 ~~~~~~~----~w~~~~~~k~~~~~ 223 (225)
++..... +...+++++++.+.
T Consensus 267 ~e~v~L~Py~~~h~~v~~~~~~~~~ 291 (293)
T PTZ00146 267 KEQLTLEPFERDHAVVIGVYRPVKK 291 (293)
T ss_pred EEEEecCCccCCcEEEEEEEcCCcc
Confidence 4433322 33567777776543
No 152
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.12 E-value=1.2e-09 Score=76.97 Aligned_cols=99 Identities=28% Similarity=0.409 Sum_probs=72.5
Q ss_pred cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccccc
Q 041459 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHE 140 (225)
Q Consensus 61 ~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (225)
+++|+|||+|.++..+++.+..+++++|+++.++..+++....... ..+.+...+......
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----------------- 61 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA--DNVEVLKGDAEELPP----------------- 61 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc--cceEEEEcChhhhcc-----------------
Confidence 5899999999999988876678899999999999999854332222 234444433322200
Q ss_pred ccCCCCCCceeEEEeccchhH----HHHHHHHHHHhccCCeEEEEe
Q 041459 141 IRGISETEKYDVVIANILLNP----LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 141 ~~~~~~~~~~DvIi~~~~~~~----~~~~l~~~~~~LkpgG~l~~~ 182 (225)
....++|+|+++.+++. ...+++.+.+.+++||.++++
T Consensus 62 ----~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 62 ----EADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ----ccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 03567999999988754 567789999999999999875
No 153
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.11 E-value=3.5e-10 Score=99.67 Aligned_cols=157 Identities=22% Similarity=0.236 Sum_probs=87.7
Q ss_pred ceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
+..+.++|+..|.........++..++......+..+||+.||.|++++.++.. ..+|+|+|+++.+++.|++|+..|+
T Consensus 164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~ 242 (352)
T PF05958_consen 164 GLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNG 242 (352)
T ss_dssp TEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcC
Confidence 467778888766654443333333333332222347999999999999999887 4579999999999999999999999
Q ss_pred CCCCcceEEEecCCCCCccccccccccccccccccccCC-CCCCceeEEEeccchhHHHH-HHHHHHHhccCCeEEEEec
Q 041459 106 IGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGI-SETEKYDVVIANILLNPLLQ-LADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~DvIi~~~~~~~~~~-~l~~~~~~LkpgG~l~~~~ 183 (225)
+.+ +.+...+...+...+... ..+ . .+... .....+|+|+.+||...... +++.+. ++.-++|+||
T Consensus 243 i~n--~~f~~~~~~~~~~~~~~~-r~~---~---~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~---~~~~ivYvSC 310 (352)
T PF05958_consen 243 IDN--VEFIRGDAEDFAKALAKA-REF---N---RLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK---KLKRIVYVSC 310 (352)
T ss_dssp --S--EEEEE--SHHCCCHHCCS--GG---T---TGGGS-GGCTTESEEEE---TT-SCHHHHHHHH---HSSEEEEEES
T ss_pred CCc--ceEEEeeccchhHHHHhh-HHH---H---hhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh---cCCeEEEEEC
Confidence 875 555544433221110000 000 0 00000 02346899999999765433 333332 3467899999
Q ss_pred cCCCcHHHHHHH
Q 041459 184 ILSEQLPHIINR 195 (225)
Q Consensus 184 ~~~~~~~~~~~~ 195 (225)
....-..++...
T Consensus 311 nP~tlaRDl~~L 322 (352)
T PF05958_consen 311 NPATLARDLKIL 322 (352)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 987666776554
No 154
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.10 E-value=1.7e-09 Score=86.15 Aligned_cols=148 Identities=22% Similarity=0.241 Sum_probs=82.8
Q ss_pred ecccceecCCCCchHHHHHHHHHhh--------ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHH
Q 041459 31 LNPGLAFGTGEHATTKLCLLLLQSL--------IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 31 ~~~~~~f~~~~~~~~~~~~~~L~~~--------~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
.+.+..++...++....+..+|... ..++.+|||+|||+|..++.++.. +..+|+..|.++ .++..+.|+
T Consensus 10 e~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni 88 (173)
T PF10294_consen 10 EDWGDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNI 88 (173)
T ss_dssp -------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHH
T ss_pred cccccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHH
Confidence 3344455666778887777777652 346889999999999999999887 788899999999 999999999
Q ss_pred HhcCC-CCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCe
Q 041459 102 ALNNI-GPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGA 177 (225)
Q Consensus 102 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG 177 (225)
..|+. ....+.+...+ .-. ...... ....+||+|+..-.+ ..+..++..+.++|+++|
T Consensus 89 ~~N~~~~~~~v~v~~L~--Wg~----~~~~~~------------~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~ 150 (173)
T PF10294_consen 89 ELNGSLLDGRVSVRPLD--WGD----ELDSDL------------LEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNG 150 (173)
T ss_dssp HTT--------EEEE----TTS-----HHHHH------------HS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-T
T ss_pred HhccccccccccCcEEE--ecC----cccccc------------cccccCCEEEEecccchHHHHHHHHHHHHHHhCCCC
Confidence 98762 11334443322 110 000011 035689999986443 336778889999999998
Q ss_pred EEEEeccCC-CcHHHHHHHHH
Q 041459 178 VVGISGILS-EQLPHIINRYS 197 (225)
Q Consensus 178 ~l~~~~~~~-~~~~~~~~~~~ 197 (225)
.++++...+ .....+.+.++
T Consensus 151 ~vl~~~~~R~~~~~~F~~~~~ 171 (173)
T PF10294_consen 151 KVLLAYKRRRKSEQEFFDRLK 171 (173)
T ss_dssp TEEEEEE-S-TGGCHHHHHH-
T ss_pred EEEEEeCEecHHHHHHHHHhh
Confidence 877764433 33444544443
No 155
>PRK01581 speE spermidine synthase; Validated
Probab=99.09 E-value=1.2e-09 Score=95.64 Aligned_cols=142 Identities=16% Similarity=0.147 Sum_probs=91.0
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHH-----hcCCCCCcceEEEecCCCCCcccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAA-----LNNIGPKKMKLHLVPDRTFPASMNERVD 130 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
..+++||++|||+|..+..+++. +..+++++|+++.+++.|+.... ...+...++++...|+..+
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f--------- 219 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF--------- 219 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH---------
Confidence 35689999999999988887775 46789999999999999996211 1123334666766655332
Q ss_pred ccccccccccccCCCCCCceeEEEeccchh-------H-HHHHHHHHHHhccCCeEEEEeccCCCcH----HHHHHHHHh
Q 041459 131 GIVEDLSSHEIRGISETEKYDVVIANILLN-------P-LLQLADHIVSYAKPGAVVGISGILSEQL----PHIINRYSE 198 (225)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~~~ 198 (225)
+.. ..++||+|+++.+.. . -.+++..+.+.|+|||+++......... ..+.+.+++
T Consensus 220 --L~~----------~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~ 287 (374)
T PRK01581 220 --LSS----------PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEH 287 (374)
T ss_pred --HHh----------cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHH
Confidence 110 346799999986432 1 2567899999999999988753322222 223444444
Q ss_pred hhhhhcc------cccCCceEEEeeee
Q 041459 199 FLEDILL------SEMDDWTCVSGTKK 219 (225)
Q Consensus 199 ~~~~~~~------~~~~~w~~~~~~k~ 219 (225)
.+..... ...+.|.-..+.+.
T Consensus 288 af~~v~~y~t~vPsyg~~WgF~~as~~ 314 (374)
T PRK01581 288 AGLTVKSYHTIVPSFGTDWGFHIAANS 314 (374)
T ss_pred hCCceEEEEEecCCCCCceEEEEEeCC
Confidence 3221111 12334887777664
No 156
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.09 E-value=5e-10 Score=99.17 Aligned_cols=129 Identities=16% Similarity=0.251 Sum_probs=95.5
Q ss_pred eEEecccceecCCCCchHHHHHHHHHhhccC--CCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 28 NIILNPGLAFGTGEHATTKLCLLLLQSLIKG--GELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 28 ~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~--~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
.+.++|.|.| .+....++...+.....+ +.+|||+.||+|..++.+++. +..+|+++|+++.+++.+++|+..
T Consensus 15 ~vFYNP~~~~---nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~ 91 (374)
T TIGR00308 15 TVFYNPRMQF---NRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY 91 (374)
T ss_pred CcccCchhhc---cccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 5678899888 455666655554333221 358999999999999987765 678999999999999999999998
Q ss_pred cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
|++.+ +.+...+...+ +. . ...+||+|+.+| +.....+++.+.+.+++||.+++++
T Consensus 92 N~~~~--~~v~~~Da~~~-----------l~--------~--~~~~fDvIdlDP-fGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 92 NSVEN--IEVPNEDAANV-----------LR--------Y--RNRKFHVIDIDP-FGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred hCCCc--EEEEchhHHHH-----------HH--------H--hCCCCCEEEeCC-CCCcHHHHHHHHHhcccCCEEEEEe
Confidence 87652 34444332211 10 0 235799999998 6666788999999999999999973
No 157
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.07 E-value=1.3e-09 Score=95.14 Aligned_cols=112 Identities=22% Similarity=0.222 Sum_probs=73.0
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCC----cceEEEecCCCCCccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN--IGPK----KMKLHLVPDRTFPASMNERVDG 131 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~ 131 (225)
++.+|||+|||-|.-..-....+...++|+|++..+++.|+++..... .... .....+..++.+... +..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~----l~~ 137 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSES----LRE 137 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSH----HHC
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccch----hhh
Confidence 678999999999987777677788999999999999999999883211 0000 122333333333211 111
Q ss_pred cccccccccccCCCC-CCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEEecc
Q 041459 132 IVEDLSSHEIRGISE-TEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 132 ~~~~~~~~~~~~~~~-~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.+.+ ...||+|-|.+.+|. .+.++.++...|+|||+++.+++
T Consensus 138 -----------~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 138 -----------KLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp -----------TSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -----------hccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 1112 358999999888765 45689999999999999999765
No 158
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.06 E-value=1.3e-09 Score=89.65 Aligned_cols=130 Identities=21% Similarity=0.245 Sum_probs=78.0
Q ss_pred HHHhhccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcce--------EEEecCC--
Q 041459 51 LLQSLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMK--------LHLVPDR-- 119 (225)
Q Consensus 51 ~L~~~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~--------~~~~~~~-- 119 (225)
.|..-...++.+|||||.+|.+++.+++ .+...++|+||++..|..|++++..-.-....+. ...++..
T Consensus 51 ~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~ 130 (288)
T KOG2899|consen 51 VLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQR 130 (288)
T ss_pred hccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccc
Confidence 3333333578999999999999999887 5888899999999999999998752110000000 0000000
Q ss_pred CCCcccc-cccccccccccc------ccccCCCCCCceeEEEe---------ccchhHHHHHHHHHHHhccCCeEEEE
Q 041459 120 TFPASMN-ERVDGIVEDLSS------HEIRGISETEKYDVVIA---------NILLNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 120 ~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~DvIi~---------~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
......- .+...-+.|.+. +++. ......||+|+| |+.-+.+..++..++++|.|||++++
T Consensus 131 ~~a~~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 131 NEADRAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred ccccccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 0000000 000000011111 1111 114568999998 33345688999999999999999998
No 159
>PRK03612 spermidine synthase; Provisional
Probab=99.06 E-value=3.4e-09 Score=97.97 Aligned_cols=142 Identities=15% Similarity=0.224 Sum_probs=91.9
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHHHhc-----CCCCCcceEEEecCCCCCcccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNAALN-----NIGPKKMKLHLVPDRTFPASMNERVD 130 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
+++++|||+|||+|..+..+++.+. .+++++|+++++++.|+++.... .+++.++++...|+..+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~--------- 366 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW--------- 366 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH---------
Confidence 3578999999999999998888754 79999999999999999853211 22333556665554321
Q ss_pred ccccccccccccCCCCCCceeEEEeccchhH--------HHHHHHHHHHhccCCeEEEEeccC----CCcHHHHHHHHHh
Q 041459 131 GIVEDLSSHEIRGISETEKYDVVIANILLNP--------LLQLADHIVSYAKPGAVVGISGIL----SEQLPHIINRYSE 198 (225)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~~~ 198 (225)
+. . ..++||+|+++++... ..++++.+.+.|||||.+++.... .+...++.+.+++
T Consensus 367 --l~--------~--~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~ 434 (521)
T PRK03612 367 --LR--------K--LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEA 434 (521)
T ss_pred --HH--------h--CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHH
Confidence 11 0 2468999999876421 245788999999999999985321 2223344555554
Q ss_pred h-hh----hhcccccCCceEEEeeee
Q 041459 199 F-LE----DILLSEMDDWTCVSGTKK 219 (225)
Q Consensus 199 ~-~~----~~~~~~~~~w~~~~~~k~ 219 (225)
. |. .....+-++|.-..+.|+
T Consensus 435 ~gf~v~~~~~~vps~g~w~f~~as~~ 460 (521)
T PRK03612 435 AGLATTPYHVNVPSFGEWGFVLAGAG 460 (521)
T ss_pred cCCEEEEEEeCCCCcchhHHHeeeCC
Confidence 4 31 111122367765555443
No 160
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.04 E-value=2.6e-09 Score=89.56 Aligned_cols=109 Identities=14% Similarity=0.224 Sum_probs=85.4
Q ss_pred CCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+.++|||+|+++|+-++++++. ...+++++|.++...+.|++++...++. +++.+..+++.. .+..+...
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-~~I~~~~G~a~e-------~L~~l~~~ 150 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-HKIDFREGPALP-------VLDQMIED 150 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEEeccHHH-------HHHHHHhc
Confidence 5789999999999999998863 3568999999999999999999999987 577777665421 11111100
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
-...++||+||++.-...+..+++.+.++|+|||++++-
T Consensus 151 --------~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 151 --------GKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred --------cccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 001368999999888888889999999999999999884
No 161
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.03 E-value=2.7e-09 Score=86.59 Aligned_cols=119 Identities=25% Similarity=0.314 Sum_probs=79.3
Q ss_pred chHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCC
Q 041459 43 ATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122 (225)
Q Consensus 43 ~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (225)
+++...+++|......+.-|||||||||..+..+...| ...+|+|||+.||+.|...- ..+ +.+....+.+-.+
T Consensus 35 em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e-~eg---dlil~DMG~Glpf- 108 (270)
T KOG1541|consen 35 EMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERE-LEG---DLILCDMGEGLPF- 108 (270)
T ss_pred HHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhh-hhc---CeeeeecCCCCCC-
Confidence 34444445443322235689999999999999888887 66899999999999998632 222 3333444433333
Q ss_pred ccccccccccccccccccccCCCCCCceeEEEeccch----------hH----HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459 123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL----------NP----LLQLADHIVSYAKPGAVVGISGILSEQ 188 (225)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~----------~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~ 188 (225)
.++.||-+|+-..+ +. +..++..++.+|++|+..++. +-.++
T Consensus 109 -----------------------rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q-fYpen 164 (270)
T KOG1541|consen 109 -----------------------RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ-FYPEN 164 (270)
T ss_pred -----------------------CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE-ecccc
Confidence 68899988873222 22 345688899999999999885 33333
Q ss_pred HHH
Q 041459 189 LPH 191 (225)
Q Consensus 189 ~~~ 191 (225)
..+
T Consensus 165 ~~q 167 (270)
T KOG1541|consen 165 EAQ 167 (270)
T ss_pred hHH
Confidence 333
No 162
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.03 E-value=3e-09 Score=85.11 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=70.1
Q ss_pred HHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccc
Q 041459 50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERV 129 (225)
Q Consensus 50 ~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (225)
+.+.+.+++|.+|||+|||.|.+..++.+......+|+|++++.+..|.+ +|++ +...+.+. .+
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rGv~-----Viq~Dld~-------gL 68 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RGVS-----VIQGDLDE-------GL 68 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cCCC-----EEECCHHH-------hH
Confidence 34556677999999999999999999888666678999999999887764 4543 44444321 11
Q ss_pred cccccccccccccCCCCCCceeEEEeccchhHHH---HHHHHHHHhccCCeEEEE
Q 041459 130 DGIVEDLSSHEIRGISETEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~---~~l~~~~~~LkpgG~l~~ 181 (225)
..+ ++++||.||++-.+.... .+++++.| -|...++
T Consensus 69 ~~f-------------~d~sFD~VIlsqtLQ~~~~P~~vL~EmlR---Vgr~~IV 107 (193)
T PF07021_consen 69 ADF-------------PDQSFDYVILSQTLQAVRRPDEVLEEMLR---VGRRAIV 107 (193)
T ss_pred hhC-------------CCCCccEEehHhHHHhHhHHHHHHHHHHH---hcCeEEE
Confidence 111 789999999988876644 45555554 4544444
No 163
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.02 E-value=2.2e-09 Score=86.78 Aligned_cols=92 Identities=18% Similarity=0.243 Sum_probs=62.3
Q ss_pred hhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC-CCcccccccccc
Q 041459 54 SLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT-FPASMNERVDGI 132 (225)
Q Consensus 54 ~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 132 (225)
..++++.+|||+|||+|.++..+++.....++|+|+++.+++.|+++ + +.+...+... ++ .
T Consensus 9 ~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~-----~~~~~~d~~~~l~--------~- 70 (194)
T TIGR02081 9 NLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----G-----VNVIQGDLDEGLE--------A- 70 (194)
T ss_pred HhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----C-----CeEEEEEhhhccc--------c-
Confidence 33456789999999999999888765555689999999999888642 2 2233333221 10 0
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHH---HHHHHHHHHhccC
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPL---LQLADHIVSYAKP 175 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~---~~~l~~~~~~Lkp 175 (225)
..+++||+|+++.++++. ..+++++.+.+++
T Consensus 71 ------------~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 71 ------------FPDKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred ------------cCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 045689999999887764 4456666655443
No 164
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.01 E-value=1.8e-09 Score=93.63 Aligned_cols=85 Identities=27% Similarity=0.368 Sum_probs=60.6
Q ss_pred CCCcEEEEcccccHHHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCcceEEEe-cCCCCCcccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAI-KFGAAMSVGVDIDPQAIKSAHQNAALN-NIGPKKMKLHLV-PDRTFPASMNERVDGIVE 134 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~-~~~~~~v~~vDi~~~~l~~a~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 134 (225)
++.++||||||+|.+...++ +.+..+++|+|+++.+++.|++|+..+ ++. +.+.+... +.... ...+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~-~~I~~~~~~~~~~i-------~~~i-- 183 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN-GAIRLRLQKDSKAI-------FKGI-- 183 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc-CcEEEEEccchhhh-------hhcc--
Confidence 35799999999998876655 455678999999999999999999998 676 34555432 11111 0000
Q ss_pred ccccccccCCCCCCceeEEEeccchhH
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNP 161 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~ 161 (225)
....+.||+|+||||++.
T Consensus 184 ---------~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 184 ---------IHKNERFDATLCNPPFHA 201 (321)
T ss_pred ---------cccCCceEEEEeCCCCcC
Confidence 013568999999999864
No 165
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.97 E-value=6.5e-09 Score=94.16 Aligned_cols=114 Identities=21% Similarity=0.296 Sum_probs=81.2
Q ss_pred hHHHHHHHHHhhccC------CCcEEEEcccccHHHHHHHhc-----CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcce
Q 041459 44 TTKLCLLLLQSLIKG------GELFLDYGTGSGILGIAAIKF-----GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMK 112 (225)
Q Consensus 44 ~~~~~~~~L~~~~~~------~~~vlDiGcGtG~~~~~l~~~-----~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~ 112 (225)
+.+.+..+|.+.... +..|+|+|||+|.++..+++. ++.+|+|+|.++.+....++.+..+++. ++++
T Consensus 166 Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~-~~V~ 244 (448)
T PF05185_consen 166 YERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG-DKVT 244 (448)
T ss_dssp HHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT-TTEE
T ss_pred HHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC-CeEE
Confidence 445555666655433 468999999999998876654 3678999999999998888777788886 5688
Q ss_pred EEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch-----hHHHHHHHHHHHhccCCeEEEE
Q 041459 113 LHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~-----~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
+...+.+.+. .+.++|+|++-++- +...+.+....+.|||||+++-
T Consensus 245 vi~~d~r~v~-----------------------lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 245 VIHGDMREVE-----------------------LPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp EEES-TTTSC-----------------------HSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred EEeCcccCCC-----------------------CCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 8887766552 46699999996542 2245678888899999999874
No 166
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.95 E-value=5.8e-09 Score=86.35 Aligned_cols=106 Identities=14% Similarity=0.112 Sum_probs=83.6
Q ss_pred CcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459 60 ELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS 138 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (225)
-.+||||||.|.+.+.+|+ ++...++|+|+....+..|.+.+...++.| +.+...++..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N--lri~~~DA~~~----------------- 110 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKN--LRLLCGDAVEV----------------- 110 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCc--EEEEcCCHHHH-----------------
Confidence 4799999999999998775 688899999999999999999999999853 56665554322
Q ss_pred ccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEeccCC
Q 041459 139 HEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 139 ~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (225)
++.+.++++.|-|+.++|-.+ ....++.+.+.|||||.+.+.+...
T Consensus 111 --l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 111 --LDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred --HHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 223335669999999988644 2467899999999999999964433
No 167
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.95 E-value=1.5e-08 Score=85.66 Aligned_cols=86 Identities=13% Similarity=0.207 Sum_probs=63.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++.. . .++.+...+....
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~--~~v~ii~~D~~~~-------------- 87 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--A--GNVEIIEGDALKV-------------- 87 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--C--CCEEEEEeccccC--------------
Confidence 3467899999999999999998874 5799999999999999987643 1 3456666555433
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHH
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIV 170 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~ 170 (225)
+...+|.|++|+|++.-..++..+.
T Consensus 88 ----------~~~~~d~Vv~NlPy~i~s~~~~~l~ 112 (258)
T PRK14896 88 ----------DLPEFNKVVSNLPYQISSPITFKLL 112 (258)
T ss_pred ----------CchhceEEEEcCCcccCcHHHHHHH
Confidence 2335899999999875434443333
No 168
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.93 E-value=5.3e-09 Score=89.74 Aligned_cols=99 Identities=26% Similarity=0.283 Sum_probs=76.9
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
+++.|+|+|||+|.++..++..|+++|+++|-|. |.+.|++.++.|.+. +++.+.-+..+..
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~-~rItVI~GKiEdi---------------- 238 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLA-DRITVIPGKIEDI---------------- 238 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCcc-ceEEEccCccccc----------------
Confidence 6889999999999999999999999999999765 999999999888765 5666554444332
Q ss_pred cccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEEE
Q 041459 138 SHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~~ 181 (225)
+.+++.|+||+.|+-..+ .+.--.+.++|||.|..+-
T Consensus 239 -------eLPEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 239 -------ELPEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred -------cCchhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 257889999998775432 2222345699999999875
No 169
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.93 E-value=4.6e-09 Score=86.32 Aligned_cols=113 Identities=15% Similarity=0.211 Sum_probs=79.2
Q ss_pred CcEEEEcccccHHHHHHHh-cCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 60 ELFLDYGTGSGILGIAAIK-FGA--AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~~l~~-~~~--~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.+||++|||.|.....+.+ .+. -+++++|.+|.+++..+++..... .++...+-|...- .....+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~Dlt~~-----~~~~~~---- 140 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVWDLTSP-----SLKEPP---- 140 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch---hhhcccceeccch-----hccCCC----
Confidence 3799999999998888665 333 679999999999999998876554 2232222222111 011111
Q ss_pred ccccccCCCCCCceeEEEeccch-----hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHH
Q 041459 137 SSHEIRGISETEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGILSEQLPHII 193 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 193 (225)
..+.+|.|++-+.+ +-+...++++.++|||||.+++.+.+..++..++
T Consensus 141 ---------~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR 193 (264)
T KOG2361|consen 141 ---------EEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR 193 (264)
T ss_pred ---------CcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh
Confidence 56788988775443 4467889999999999999999888766665554
No 170
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.93 E-value=8e-09 Score=88.13 Aligned_cols=127 Identities=20% Similarity=0.203 Sum_probs=86.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC--cceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK--KMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
.+++..++|+|||-|+-.+-.-+.+...++|+||....++.|+++.....-..+ .+...+..++.+...+.+ .+
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d----~~ 190 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMD----LL 190 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHH----hc
Confidence 457889999999999988887788889999999999999999988762221111 122333333333221111 11
Q ss_pred cccccccccCCCCCCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
++ ++.+||+|-|.+.+|. .+.++.++.+.|+|||+++-+.. +...+...++..
T Consensus 191 e~----------~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP---dsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 191 EF----------KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP---DSDVIIKRLRAG 250 (389)
T ss_pred cC----------CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC---cHHHHHHHHHhc
Confidence 11 3445999999887653 45678999999999999987533 445566666543
No 171
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=6.8e-09 Score=93.38 Aligned_cols=153 Identities=20% Similarity=0.303 Sum_probs=104.5
Q ss_pred CcceeEEecccceecCCCCchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
..++.|.++|+..|++...... .+...+.+. +..++.++|++||||.+++.+++. ..+|+|+++++.++..|++|+
T Consensus 348 l~~ltF~iSp~AFFQ~Nt~~ae-vLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA 425 (534)
T KOG2187|consen 348 LLGLTFRISPGAFFQTNTSAAE-VLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNA 425 (534)
T ss_pred cCCeEEEECCchhhccCcHHHH-HHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcc
Confidence 5568889999988877654333 222333332 445789999999999999988775 677999999999999999999
Q ss_pred HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCcee-EEEeccchhHHH-HHHHHHHHhccCCeEE
Q 041459 102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYD-VVIANILLNPLL-QLADHIVSYAKPGAVV 179 (225)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-vIi~~~~~~~~~-~~l~~~~~~LkpgG~l 179 (225)
..|++.| .++..+.++.. ...++.+ ..+.-+ +++++++...+. .++..+..+-++.-.+
T Consensus 426 ~~NgisN--a~Fi~gqaE~~-------~~sl~~~----------~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlv 486 (534)
T KOG2187|consen 426 QINGISN--ATFIVGQAEDL-------FPSLLTP----------CCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLV 486 (534)
T ss_pred hhcCccc--eeeeecchhhc-------cchhccc----------CCCCCceEEEECCCcccccHHHHHHHHhccCccceE
Confidence 9999987 45555544322 1222111 112335 667788765443 4556666666689999
Q ss_pred EEeccCCCcHHHHHHHHH
Q 041459 180 GISGILSEQLPHIINRYS 197 (225)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~ 197 (225)
|++|...-...+......
T Consensus 487 yvSCn~~t~ar~v~~lc~ 504 (534)
T KOG2187|consen 487 YVSCNPHTAARNVIDLCS 504 (534)
T ss_pred EEEcCHHHhhhhHHHhhc
Confidence 999987655555555544
No 172
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.92 E-value=9.2e-09 Score=87.04 Aligned_cols=124 Identities=12% Similarity=0.147 Sum_probs=87.5
Q ss_pred CCcEEEEccccc----HHHHHHHhcC------CCeEEEEeCCHHHHHHHHHHHHh-----cCCCCCcceEEEecCCCCCc
Q 041459 59 GELFLDYGTGSG----ILGIAAIKFG------AAMSVGVDIDPQAIKSAHQNAAL-----NNIGPKKMKLHLVPDRTFPA 123 (225)
Q Consensus 59 ~~~vlDiGcGtG----~~~~~l~~~~------~~~v~~vDi~~~~l~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 123 (225)
..+||.+||+|| ++++.+.+.. .-+|+|.|+|..+|+.|+..... .+++.....-.+.....-.+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 569999999999 5555555532 35799999999999999887654 33332222222323222234
Q ss_pred cccccccccccccccccccCCCCCCceeEEEeccch-----hHHHHHHHHHHHhccCCeEEEEe
Q 041459 124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.+++.+..+|.+..-|++......+.||+|+|..++ .....++..++..|+|||++++.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 566777788888777777765456779999994433 23567899999999999999983
No 173
>PLN02823 spermine synthase
Probab=98.91 E-value=4.9e-08 Score=85.39 Aligned_cols=141 Identities=18% Similarity=0.286 Sum_probs=95.6
Q ss_pred CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCcceEEEecCCCCCcccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNN--IGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.+++||.+|+|.|..+..+++. +..+++++|+++.+++.|++.+..+. +.+.++++...|+..+ +.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~-----------L~ 171 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE-----------LE 171 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH-----------Hh
Confidence 4679999999999999987774 56789999999999999998875432 3334666766655322 11
Q ss_pred ccccccccCCCCCCceeEEEeccch--------hH-HHHHHH-HHHHhccCCeEEEEeccC------CCcHHHHHHHHHh
Q 041459 135 DLSSHEIRGISETEKYDVVIANILL--------NP-LLQLAD-HIVSYAKPGAVVGISGIL------SEQLPHIINRYSE 198 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~--------~~-~~~~l~-~~~~~LkpgG~l~~~~~~------~~~~~~~~~~~~~ 198 (225)
. ..++||+|+++.+- .- -.++++ .+.+.|+|||++++..-. ......+.+.+++
T Consensus 172 ~----------~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~ 241 (336)
T PLN02823 172 K----------RDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQ 241 (336)
T ss_pred h----------CCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHH
Confidence 1 35689999997421 11 245677 789999999998874221 1123456666666
Q ss_pred hhhhhcccc------cCCceEEEeeee
Q 041459 199 FLEDILLSE------MDDWTCVSGTKK 219 (225)
Q Consensus 199 ~~~~~~~~~------~~~w~~~~~~k~ 219 (225)
.|..+.... .+.|.-+.+.|+
T Consensus 242 vF~~v~~y~~~vPsf~~~w~f~~aS~~ 268 (336)
T PLN02823 242 VFKYVVPYTAHVPSFADTWGWVMASDH 268 (336)
T ss_pred hCCCEEEEEeecCCCCCceEEEEEeCC
Confidence 665544432 245887777765
No 174
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.90 E-value=2.5e-08 Score=84.98 Aligned_cols=89 Identities=19% Similarity=0.143 Sum_probs=65.7
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++.+. +++|+|+++.+++.++++... .++.+...|...++.
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~------------ 101 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVDL------------ 101 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCCH------------
Confidence 34678999999999999999988764 799999999999999876532 235666665544311
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHh
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSY 172 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~ 172 (225)
+...++.|++|+|+..-..++..+...
T Consensus 102 ----------~~~~~~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 102 ----------SELQPLKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ----------HHcCcceEEEeCCccchHHHHHHHHhc
Confidence 111158999999998767766666543
No 175
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.90 E-value=2.4e-09 Score=86.82 Aligned_cols=123 Identities=12% Similarity=0.177 Sum_probs=73.1
Q ss_pred CCCcEEEEccccc----HHHHHHHhc---C---CCeEEEEeCCHHHHHHHHHHHHhc----CCCCCcce--EEEecCCCC
Q 041459 58 GGELFLDYGTGSG----ILGIAAIKF---G---AAMSVGVDIDPQAIKSAHQNAALN----NIGPKKMK--LHLVPDRTF 121 (225)
Q Consensus 58 ~~~~vlDiGcGtG----~~~~~l~~~---~---~~~v~~vDi~~~~l~~a~~~~~~~----~~~~~~~~--~~~~~~~~~ 121 (225)
+..+||..||+|| ++++.+.+. . .-+|+|.|+|+.+|+.|++..... +++..... +...+++.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~- 109 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG- 109 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC-
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc-
Confidence 3469999999999 455555551 1 247999999999999998876421 12111111 11222322
Q ss_pred CccccccccccccccccccccCCCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEEe
Q 041459 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
..+.+.+...|.+...|++......+.||+|+|..++- ....+++.+.+.|+|||++++.
T Consensus 110 -~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 110 -YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp -TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred -eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 23556777788888777777444677899999955542 2467899999999999999984
No 176
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.90 E-value=1.2e-08 Score=83.51 Aligned_cols=142 Identities=21% Similarity=0.209 Sum_probs=96.9
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++.|.+|||.|.|-|+.++.+++.|+.+|+.+|.+|..|+.|.-|--..++....+++..+|+.. .+..+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e-------~V~~~--- 201 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE-------VVKDF--- 201 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH-------HHhcC---
Confidence 55799999999999999999999999999999999999999976644344332334555544321 12222
Q ss_pred cccccccCCCCCCceeEEEeccchhH------HHHHHHHHHHhccCCeEEEEe-cc-C-----CCcHHHHHHHHHhh-hh
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP------LLQLADHIVSYAKPGAVVGIS-GI-L-----SEQLPHIINRYSEF-LE 201 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~------~~~~l~~~~~~LkpgG~l~~~-~~-~-----~~~~~~~~~~~~~~-~~ 201 (225)
++.+||+|+-+||--. -.++-.++++.|||||.++-- +. + .+-...+.+.+++. |.
T Consensus 202 ----------~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~ 271 (287)
T COG2521 202 ----------DDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFE 271 (287)
T ss_pred ----------CccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCce
Confidence 6788999999988522 245778899999999998752 22 2 23344555666654 55
Q ss_pred hhcccccCCceEEEeeee
Q 041459 202 DILLSEMDDWTCVSGTKK 219 (225)
Q Consensus 202 ~~~~~~~~~w~~~~~~k~ 219 (225)
.+. ...+|-.+.+.|+
T Consensus 272 ~v~--~~~~~~gv~A~k~ 287 (287)
T COG2521 272 VVK--KVREALGVVAVKP 287 (287)
T ss_pred eee--eehhccceEEecC
Confidence 333 3344656666553
No 177
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.87 E-value=3.3e-08 Score=86.82 Aligned_cols=102 Identities=25% Similarity=0.297 Sum_probs=81.0
Q ss_pred CCCcEEEEcccccHHHHHHHhcCC------C----------------------------------eEEEEeCCHHHHHHH
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGA------A----------------------------------MSVGVDIDPQAIKSA 97 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~------~----------------------------------~v~~vDi~~~~l~~a 97 (225)
++..++|.-||+|++++.+|..+. . .++|+|+++.+++.|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 567999999999999998775431 1 378999999999999
Q ss_pred HHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-----------HHHHH
Q 041459 98 HQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----------LLQLA 166 (225)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l 166 (225)
+.|+...|+. +.+.+...+...++. +.+.+|+||||||+.. +..+.
T Consensus 271 k~NA~~AGv~-d~I~f~~~d~~~l~~----------------------~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg 327 (381)
T COG0116 271 KANARAAGVG-DLIEFKQADATDLKE----------------------PLEEYGVVISNPPYGERLGSEALVAKLYREFG 327 (381)
T ss_pred HHHHHhcCCC-ceEEEEEcchhhCCC----------------------CCCcCCEEEeCCCcchhcCChhhHHHHHHHHH
Confidence 9999999988 678888877766531 2268999999999843 45566
Q ss_pred HHHHHhccCCeEEEEe
Q 041459 167 DHIVSYAKPGAVVGIS 182 (225)
Q Consensus 167 ~~~~~~LkpgG~l~~~ 182 (225)
..+.+.++--+..+++
T Consensus 328 ~~lk~~~~~ws~~v~t 343 (381)
T COG0116 328 RTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHhcCCceEEEE
Confidence 7777888877888775
No 178
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.86 E-value=3.2e-08 Score=85.15 Aligned_cols=89 Identities=19% Similarity=0.293 Sum_probs=66.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++..++.. .++.+...|....
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~-~~v~ii~~Dal~~-------------- 97 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLA-SKLEVIEGDALKT-------------- 97 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECCHhhh--------------
Confidence 4467899999999999999988764 56999999999999999988765532 3466666554322
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHH
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIV 170 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~ 170 (225)
....||+|++|+||+.-..++-.+.
T Consensus 98 ----------~~~~~d~VvaNlPY~Istpil~~ll 122 (294)
T PTZ00338 98 ----------EFPYFDVCVANVPYQISSPLVFKLL 122 (294)
T ss_pred ----------cccccCEEEecCCcccCcHHHHHHH
Confidence 2346899999999976555444443
No 179
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.86 E-value=4.6e-08 Score=89.11 Aligned_cols=117 Identities=16% Similarity=0.176 Sum_probs=85.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|.+|||+|||+|.-+.+++.. +...+++.|+++.-++..++|+...++.+ +.+...++..+.. .
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n--v~v~~~D~~~~~~--------~- 179 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN--VALTHFDGRVFGA--------A- 179 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe--EEEEeCchhhhhh--------h-
Confidence 468899999999999999988763 34689999999999999999999988864 4455444433210 0
Q ss_pred cccccccccCCCCCCceeEEEeccchhH-------------------------HHHHHHHHHHhccCCeEEEEeccC--C
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP-------------------------LLQLADHIVSYAKPGAVVGISGIL--S 186 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~~--~ 186 (225)
....||.|+++.|... ..+++..+.++|||||+++.++.. .
T Consensus 180 ------------~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 180 ------------LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred ------------chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 2456999999877320 256899999999999999886332 3
Q ss_pred CcHHHHHHH
Q 041459 187 EQLPHIINR 195 (225)
Q Consensus 187 ~~~~~~~~~ 195 (225)
.+.++..+.
T Consensus 248 eENE~vV~~ 256 (470)
T PRK11933 248 EENQAVCLW 256 (470)
T ss_pred HHHHHHHHH
Confidence 444444433
No 180
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.85 E-value=1.4e-09 Score=88.70 Aligned_cols=96 Identities=26% Similarity=0.395 Sum_probs=68.5
Q ss_pred CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459 59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS 138 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (225)
-.+++|+|||||..+..+... ..+++|+|+|.+|++.|..+-.+..+. ..+...| +.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~YD~L~-------~Aea~~F-----------l~---- 182 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLYDTLY-------VAEAVLF-----------LE---- 182 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccchHHHH-------HHHHHHH-----------hh----
Confidence 469999999999999887665 456899999999999998654322211 1111101 00
Q ss_pred ccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCeEEEEe
Q 041459 139 HEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 139 ~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
....++||+|...-++ ..+..++..+...|+|||.+.||
T Consensus 183 -----~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFS 224 (287)
T COG4976 183 -----DLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFS 224 (287)
T ss_pred -----hccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEE
Confidence 0146789999985433 34677888899999999999997
No 181
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.85 E-value=6.7e-08 Score=81.39 Aligned_cols=86 Identities=17% Similarity=0.247 Sum_probs=64.7
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++.+. .++++|+++.+++.++.+... ..++.+...+....+
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~----~~~v~v~~~D~~~~~-------------- 88 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL----YERLEVIEGDALKVD-------------- 88 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc----CCcEEEEECchhcCC--------------
Confidence 4678999999999999999988764 599999999999999877632 134556655554331
Q ss_pred ccccccCCCCCCcee---EEEeccchhHHHHHHHHHHH
Q 041459 137 SSHEIRGISETEKYD---VVIANILLNPLLQLADHIVS 171 (225)
Q Consensus 137 ~~~~~~~~~~~~~~D---vIi~~~~~~~~~~~l~~~~~ 171 (225)
...+| +|++|+|++....++..+..
T Consensus 89 ----------~~~~d~~~~vvsNlPy~i~~~il~~ll~ 116 (253)
T TIGR00755 89 ----------LPDFPKQLKVVSNLPYNISSPLIFKLLE 116 (253)
T ss_pred ----------hhHcCCcceEEEcCChhhHHHHHHHHhc
Confidence 12355 99999999877777776664
No 182
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=5.1e-09 Score=79.79 Aligned_cols=79 Identities=23% Similarity=0.322 Sum_probs=61.4
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
.|+.++|+|||+|.+++..+-.+...++|+|++|.+++.+.+|+....++.+.+++...+...
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~----------------- 110 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLEL----------------- 110 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhc-----------------
Confidence 589999999999999987777788889999999999999999998777653222222211110
Q ss_pred cccccCCCCCCceeEEEeccchhH
Q 041459 138 SHEIRGISETEKYDVVIANILLNP 161 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~ 161 (225)
..+.||..+.|+|+..
T Consensus 111 --------~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 111 --------KGGIFDTAVINPPFGT 126 (185)
T ss_pred --------cCCeEeeEEecCCCCc
Confidence 3578999999999854
No 183
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.83 E-value=8.2e-08 Score=79.63 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=36.6
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHH
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKS 96 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~ 96 (225)
.+++++||+|||||.++..+++.|+.+++|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3678999999999999999999999999999999988866
No 184
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.82 E-value=2.1e-08 Score=86.75 Aligned_cols=120 Identities=27% Similarity=0.359 Sum_probs=74.1
Q ss_pred CchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHh--------cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcc
Q 041459 42 HATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIK--------FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKM 111 (225)
Q Consensus 42 ~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~--------~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~ 111 (225)
+.|...+..++..+ ..++.+|+|.+||+|.+...+.+ ....+++|+|+++.++..|+.++..++......
T Consensus 28 ~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~ 107 (311)
T PF02384_consen 28 FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNI 107 (311)
T ss_dssp C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGC
T ss_pred eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccc
Confidence 33444444444333 33567899999999999887665 256789999999999999999988777654333
Q ss_pred eEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHH------------------------HHHHH
Q 041459 112 KLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL------------------------LQLAD 167 (225)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~------------------------~~~l~ 167 (225)
.+...+.-..+ .......||+|++|||+... ..++.
T Consensus 108 ~i~~~d~l~~~--------------------~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~ 167 (311)
T PF02384_consen 108 NIIQGDSLEND--------------------KFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIE 167 (311)
T ss_dssp EEEES-TTTSH--------------------SCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHH
T ss_pred ccccccccccc--------------------ccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHH
Confidence 34443321110 00024689999999996321 13678
Q ss_pred HHHHhccCCeEEEE
Q 041459 168 HIVSYAKPGAVVGI 181 (225)
Q Consensus 168 ~~~~~LkpgG~l~~ 181 (225)
.+.+.||+||.+.+
T Consensus 168 ~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 168 HALSLLKPGGRAAI 181 (311)
T ss_dssp HHHHTEEEEEEEEE
T ss_pred HHHhhcccccceeE
Confidence 89999999998655
No 185
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.77 E-value=2.3e-07 Score=76.79 Aligned_cols=107 Identities=10% Similarity=0.128 Sum_probs=71.9
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc-------C---CCCCcceEEEecCCCCCccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN-------N---IGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
++.+||..|||.|.-+.++++.|.. |+|+|+|+.+++.+.+..... . .....+.+...|.-.++.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~---- 117 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK---- 117 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc----
Confidence 5689999999999999999999887 999999999999986521100 0 001223344333322210
Q ss_pred cccccccccccccccCCCCCCceeEEEec-----cchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIAN-----ILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~-----~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.-...+.||.|+-. .+.+...++++.+.++|+|||.+++..+
T Consensus 118 ---------------~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 118 ---------------IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred ---------------cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 00023578887653 3345567899999999999999877433
No 186
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.77 E-value=2.9e-08 Score=81.66 Aligned_cols=98 Identities=13% Similarity=0.176 Sum_probs=66.5
Q ss_pred CcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccc
Q 041459 60 ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSH 139 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (225)
..++|+|||+|-.++.++.. ..+|+|+|+++.||+.|++.....-.. ....+...+...+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~-t~~~ms~~~~v~L------------------ 94 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCH-TPSTMSSDEMVDL------------------ 94 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCccccc-CCccccccccccc------------------
Confidence 38999999999666777776 567999999999999887653311110 1111111111111
Q ss_pred cccCCCCCCceeEEEeccchhH--HHHHHHHHHHhccCCe-EEEE
Q 041459 140 EIRGISETEKYDVVIANILLNP--LLQLADHIVSYAKPGA-VVGI 181 (225)
Q Consensus 140 ~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~~LkpgG-~l~~ 181 (225)
.-.++++|+|++.-.+|+ +.++.+.+++.||+.| ++.+
T Consensus 95 ----~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 95 ----LGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ----cCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 113678999999888887 4678999999999977 5444
No 187
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.75 E-value=2.4e-08 Score=85.51 Aligned_cols=124 Identities=10% Similarity=0.151 Sum_probs=79.6
Q ss_pred CCcEEEEccccc----HHHHHHHhc-C----CCeEEEEeCCHHHHHHHHHHHHh----cCCCCCcceEEEecC---CCCC
Q 041459 59 GELFLDYGTGSG----ILGIAAIKF-G----AAMSVGVDIDPQAIKSAHQNAAL----NNIGPKKMKLHLVPD---RTFP 122 (225)
Q Consensus 59 ~~~vlDiGcGtG----~~~~~l~~~-~----~~~v~~vDi~~~~l~~a~~~~~~----~~~~~~~~~~~~~~~---~~~~ 122 (225)
..+||..||+|| ++++.+.+. + ..+|+|+|+|+.+|+.|++.... .+++.....-.+... ..-.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 455555553 1 24799999999999999987531 111111111111110 0001
Q ss_pred ccccccccccccccccccccC-CCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEEe
Q 041459 123 ASMNERVDGIVEDLSSHEIRG-ISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
+.+.+.+...|.+...|++.. ....+.||+|+|..++. ....++..+.+.|+|||++++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 234455666777777666652 22357899999954442 3567899999999999998884
No 188
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.4e-07 Score=76.21 Aligned_cols=115 Identities=22% Similarity=0.330 Sum_probs=82.2
Q ss_pred chHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc-CC--CeEEEEeCCHHHHHHHHHHHHhcC--------CCCCcc
Q 041459 43 ATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GA--AMSVGVDIDPQAIKSAHQNAALNN--------IGPKKM 111 (225)
Q Consensus 43 ~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~-~~--~~v~~vDi~~~~l~~a~~~~~~~~--------~~~~~~ 111 (225)
-+....++.|...+++|.+.||+|+|||+++.+++.. +. ...+|+|.-++.++.+++|+...- +....+
T Consensus 67 ~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 67 HMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 3556677888877889999999999999999988753 22 224999999999999999987433 222345
Q ss_pred eEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 112 KLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.+..+++.... .+..+||.|.+...- .+..+.+..-|++||.+++-
T Consensus 147 ~ivvGDgr~g~----------------------~e~a~YDaIhvGAaa---~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 147 SIVVGDGRKGY----------------------AEQAPYDAIHVGAAA---SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred EEEeCCccccC----------------------CccCCcceEEEccCc---cccHHHHHHhhccCCeEEEe
Confidence 55555554332 156789999985322 23445666788899988873
No 189
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.66 E-value=3.1e-07 Score=87.92 Aligned_cols=104 Identities=24% Similarity=0.279 Sum_probs=70.8
Q ss_pred cCCCcEEEEcccccHHHHHHHhc------C-------------------------------------CCeEEEEeCCHHH
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF------G-------------------------------------AAMSVGVDIDPQA 93 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~------~-------------------------------------~~~v~~vDi~~~~ 93 (225)
+++..++|.+||+|++.+.++.. | ..+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 45789999999999999986541 0 1258999999999
Q ss_pred HHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-------HHHHH
Q 041459 94 IKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-------LLQLA 166 (225)
Q Consensus 94 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~l 166 (225)
++.|+.|+..+++. +.+.+...+...++. ....+.+|+|++|||+.. ...+.
T Consensus 269 v~~A~~N~~~~g~~-~~i~~~~~D~~~~~~--------------------~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY 327 (702)
T PRK11783 269 IQAARKNARRAGVA-ELITFEVKDVADLKN--------------------PLPKGPTGLVISNPPYGERLGEEPALIALY 327 (702)
T ss_pred HHHHHHHHHHcCCC-cceEEEeCChhhccc--------------------ccccCCCCEEEECCCCcCccCchHHHHHHH
Confidence 99999999999986 345665555433311 002346999999999832 22222
Q ss_pred HH---HHHhccCCeEEEE
Q 041459 167 DH---IVSYAKPGAVVGI 181 (225)
Q Consensus 167 ~~---~~~~LkpgG~l~~ 181 (225)
.. ..+...+|+.+++
T Consensus 328 ~~lg~~lk~~~~g~~~~l 345 (702)
T PRK11783 328 SQLGRRLKQQFGGWNAAL 345 (702)
T ss_pred HHHHHHHHHhCCCCeEEE
Confidence 22 2333348877765
No 190
>PRK00536 speE spermidine synthase; Provisional
Probab=98.65 E-value=1.5e-06 Score=73.55 Aligned_cols=134 Identities=13% Similarity=0.042 Sum_probs=90.8
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++||=+|.|.|..+..+++.+. +++.||+++.+++.+++.++.. .+++.++++... + .+
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~-----------~~- 134 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----L-----------LD- 134 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----h-----------hh-
Confidence 468999999999999999999864 8999999999999999866532 233334444321 0 00
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc--C--CCcHHHHHHHHHhhhhhhccc-----
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI--L--SEQLPHIINRYSEFLEDILLS----- 206 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~--~~~~~~~~~~~~~~~~~~~~~----- 206 (225)
...++||+||++..+. ....+.+.+.|+|||+++...- . .+....+.+.+++.|..+...
T Consensus 135 ---------~~~~~fDVIIvDs~~~--~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~vp 203 (262)
T PRK00536 135 ---------LDIKKYDLIICLQEPD--IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFVAPLR 203 (262)
T ss_pred ---------ccCCcCCEEEEcCCCC--hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEEecCC
Confidence 0246899999986543 5566789999999999998421 1 233445556666555433222
Q ss_pred ccCCceEEEeeee
Q 041459 207 EMDDWTCVSGTKK 219 (225)
Q Consensus 207 ~~~~w~~~~~~k~ 219 (225)
.-|.|.-..+.|+
T Consensus 204 ~~g~wgf~~aS~~ 216 (262)
T PRK00536 204 ILSNKGYIYASFK 216 (262)
T ss_pred CcchhhhheecCC
Confidence 2367876666654
No 191
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.65 E-value=3.1e-07 Score=77.18 Aligned_cols=123 Identities=19% Similarity=0.252 Sum_probs=83.2
Q ss_pred CCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcC--CCCCcceEEEecCCCCCcccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNN--IGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.+++||-+|.|.|..+..+.+.+ ..++++||+++.+++.|++.+.... ....++++...|+..+ |.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~-----------l~ 144 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF-----------LK 144 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH-----------HH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH-----------HH
Confidence 57999999999999999988865 6789999999999999998876432 2345677776655322 21
Q ss_pred ccccccccCCCCCC-ceeEEEeccchh-------HHHHHHHHHHHhccCCeEEEEeccC----CCcHHHHHHHHHhhhh
Q 041459 135 DLSSHEIRGISETE-KYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGISGIL----SEQLPHIINRYSEFLE 201 (225)
Q Consensus 135 ~~~~~~~~~~~~~~-~~DvIi~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~~~~~~ 201 (225)
. ..+ +||+|+.+..-. .-.++++.+.+.|+|||++++.... ......+.+.++..|.
T Consensus 145 ~----------~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 145 E----------TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP 213 (246)
T ss_dssp T----------SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred h----------ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC
Confidence 1 233 899999965431 1367889999999999999985321 1233334445555444
No 192
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.1e-07 Score=78.21 Aligned_cols=144 Identities=17% Similarity=0.138 Sum_probs=95.0
Q ss_pred eeecCceEEeeCCCCCCCCcceeEEec-ccceecCCCCchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhcCCC
Q 041459 6 VEVTKGLWIVPEWSTPPDVQATNIILN-PGLAFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAA 82 (225)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~~~ 82 (225)
|.+++..+.+|+- ... .+..+++. +.+.|-+.. .-.+...|..+ ..++..+||+|+.||.++.++++.|+.
T Consensus 30 V~Vng~~v~KP~~-~V~--~~~~i~v~~~~~~yVSRG---~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk 103 (245)
T COG1189 30 VLVNGEKVTKPSQ-LVD--IDDEIEVKGEEQPYVSRG---GLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAK 103 (245)
T ss_pred EEECCEEecCcce-ecC--CCceEEEcccCcCccccH---HHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCc
Confidence 7788888888882 222 33455554 555542211 12233344433 346899999999999999999999999
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHH
Q 041459 83 MSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL 162 (225)
Q Consensus 83 ~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~ 162 (225)
+|+|+|+.-..+.+--++-. ..+.+...+...+.. . . -.+..|+++|+..+..+
T Consensus 104 ~VyavDVG~~Ql~~kLR~d~------rV~~~E~tN~r~l~~------------~------~--~~~~~d~~v~DvSFISL 157 (245)
T COG1189 104 HVYAVDVGYGQLHWKLRNDP------RVIVLERTNVRYLTP------------E------D--FTEKPDLIVIDVSFISL 157 (245)
T ss_pred EEEEEEccCCccCHhHhcCC------cEEEEecCChhhCCH------------H------H--cccCCCeEEEEeehhhH
Confidence 99999998876655433211 112222222222110 0 0 12367999999999999
Q ss_pred HHHHHHHHHhccCCeEEEE
Q 041459 163 LQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 163 ~~~l~~~~~~LkpgG~l~~ 181 (225)
..++..+..++++++.++.
T Consensus 158 ~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 158 KLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HHHHHHHHHhcCCCceEEE
Confidence 9999999999999988776
No 193
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.64 E-value=1.2e-07 Score=77.42 Aligned_cols=101 Identities=19% Similarity=0.167 Sum_probs=69.9
Q ss_pred CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459 59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS 138 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (225)
..+.||.|||-|+++-.++..-..+|..+|..+..++.|++.+.... .....+.......+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~--~~v~~~~~~gLQ~f----------------- 116 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN--PRVGEFYCVGLQDF----------------- 116 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG--CCEEEEEES-GGG------------------
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC--CCcceEEecCHhhc-----------------
Confidence 46899999999999998766558899999999999999997654311 11123333332222
Q ss_pred ccccCCCC-CCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459 139 HEIRGISE-TEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 139 ~~~~~~~~-~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.+ ..+||+|.+.+.+.+ +..++.++...|+|+|++++-++
T Consensus 117 ------~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 117 ------TPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp ---------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ------cCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEec
Confidence 23 468999999988755 56789999999999999998544
No 194
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.63 E-value=9e-07 Score=72.52 Aligned_cols=108 Identities=17% Similarity=0.269 Sum_probs=83.1
Q ss_pred CCCcEEEEcccccHHHHHHHh-c-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIK-F-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~-~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++++||+|.-||.-++..|. . ...+++++|+++...+.+....+..++. +++.+..+++- +-+..++.+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-~KI~~i~g~a~-------esLd~l~~~ 144 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-HKITFIEGPAL-------ESLDELLAD 144 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-ceeeeeecchh-------hhHHHHHhc
Confidence 689999999999988887554 3 4578999999999999998888888876 56666555432 112222221
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
. +.+.||++|.+.--..+..+.+++.+++++||++++-
T Consensus 145 ~---------~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 145 G---------ESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred C---------CCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEe
Confidence 1 5678999999877777779999999999999999984
No 195
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.61 E-value=1.3e-07 Score=84.08 Aligned_cols=148 Identities=22% Similarity=0.315 Sum_probs=92.5
Q ss_pred ceEEeeCCCCCCCCcceeEEecccceecCCCCchHHHHHHHHHhh---ccCCCcEEEEcccccHHHHHH-Hh-cCCCeEE
Q 041459 11 GLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSL---IKGGELFLDYGTGSGILGIAA-IK-FGAAMSV 85 (225)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~---~~~~~~vlDiGcGtG~~~~~l-~~-~~~~~v~ 85 (225)
.++++|.-.. ....+..+.++|.|.| .+....++..++... ..++.++||.-+|||.-++-. .+ .+..+|+
T Consensus 3 ~~i~v~~~~~-~~~~~~~vFYNP~~~~---nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~ 78 (377)
T PF02005_consen 3 AKIKVPEANI-TIPKKAPVFYNPVMEF---NRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVT 78 (377)
T ss_dssp EEEEEE---S-STTTTSSSS--GGGHH---HHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEE
T ss_pred eEEEeCCcee-ecCCCCCcccCcchhc---ccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEE
Confidence 3445555321 1223346778999988 355555553323222 234569999999999998864 45 4678899
Q ss_pred EEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHH
Q 041459 86 GVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQL 165 (225)
Q Consensus 86 ~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~ 165 (225)
+-|+|+.+.+..++|+..|++..+.+.+...|++.+ +. .....||+|=.+| +.....+
T Consensus 79 ~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~l-------l~--------------~~~~~fD~IDlDP-fGSp~pf 136 (377)
T PF02005_consen 79 ANDISPEAVELIKRNLELNGLEDERIEVSNMDANVL-------LY--------------SRQERFDVIDLDP-FGSPAPF 136 (377)
T ss_dssp EEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHH-------HC--------------HSTT-EEEEEE---SS--HHH
T ss_pred EecCCHHHHHHHHHhHhhccccCceEEEehhhHHHH-------hh--------------hccccCCEEEeCC-CCCccHh
Confidence 999999999999999999998854566665544322 00 1467899998766 6667889
Q ss_pred HHHHHHhccCCeEEEEecc
Q 041459 166 ADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 166 l~~~~~~LkpgG~l~~~~~ 184 (225)
++.+.+.++.||.+++++.
T Consensus 137 ldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 137 LDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp HHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHhhcCCEEEEecc
Confidence 9999999999999999643
No 196
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.59 E-value=4.3e-07 Score=83.77 Aligned_cols=119 Identities=14% Similarity=0.058 Sum_probs=86.0
Q ss_pred CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.+-.+||||||.|.+...+|. ++...++|+|+....+..+.+.+...++.| +.+...+...+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N--~~~~~~~~~~~--------------- 409 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN--FLLFPNNLDLI--------------- 409 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe--EEEEcCCHHHH---------------
Confidence 356899999999999998776 688889999999999999988888778765 44433222111
Q ss_pred ccccccCCCCCCceeEEEeccchhHH-----------HHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPL-----------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
....+++++|.|++++|-.++ ..+++.+.+.|||||.+.+.+...+......+.+.+
T Consensus 410 -----~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~ 477 (506)
T PRK01544 410 -----LNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQ 477 (506)
T ss_pred -----HHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 111157789999999886542 467899999999999999865544444444444443
No 197
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.58 E-value=6.3e-07 Score=70.34 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=60.9
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCC-CCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--
Q 041459 85 VGVDIDPQAIKSAHQNAALNNIG-PKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-- 161 (225)
Q Consensus 85 ~~vDi~~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-- 161 (225)
+|+|+|+.|++.|+++....... ..++.+...+...++. ++++||+|++...+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~----------------------~~~~fD~v~~~~~l~~~~ 58 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF----------------------DDCEFDAVTMGYGLRNVV 58 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC----------------------CCCCeeEEEecchhhcCC
Confidence 48999999999998776532211 1246677777665532 5678999999877654
Q ss_pred -HHHHHHHHHHhccCCeEEEEeccCCC
Q 041459 162 -LLQLADHIVSYAKPGAVVGISGILSE 187 (225)
Q Consensus 162 -~~~~l~~~~~~LkpgG~l~~~~~~~~ 187 (225)
....++++.+.|||||.+++.++...
T Consensus 59 d~~~~l~ei~rvLkpGG~l~i~d~~~~ 85 (160)
T PLN02232 59 DRLRAMKEMYRVLKPGSRVSILDFNKS 85 (160)
T ss_pred CHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 67789999999999999998877643
No 198
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=9.2e-07 Score=71.74 Aligned_cols=123 Identities=18% Similarity=0.198 Sum_probs=83.7
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|+|+|+.+|..+..+++. + ..+|+|+|+.|- ....+ +.+...+. ...+..+.+...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~~~--V~~iq~d~--~~~~~~~~l~~~- 106 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPIPG--VIFLQGDI--TDEDTLEKLLEA- 106 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccCCC--ceEEeeec--cCccHHHHHHHH-
Confidence 668999999999999999998875 2 345999999882 22222 33333322 211111222221
Q ss_pred cccccccccCCCCCCceeEEEeccch--------hHHH------HHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILL--------NPLL------QLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~--------~~~~------~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
.....+|+|++++.. ++++ ..++-+...|+|||.+++..+......++...+++.
T Consensus 107 -----------l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~ 175 (205)
T COG0293 107 -----------LGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRL 175 (205)
T ss_pred -----------cCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHh
Confidence 145568999997653 3322 235666789999999999999999999999999988
Q ss_pred hhhhcc
Q 041459 200 LEDILL 205 (225)
Q Consensus 200 ~~~~~~ 205 (225)
|+.+..
T Consensus 176 F~~v~~ 181 (205)
T COG0293 176 FRKVKI 181 (205)
T ss_pred hceeEE
Confidence 765554
No 199
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1.4e-06 Score=76.96 Aligned_cols=143 Identities=18% Similarity=0.169 Sum_probs=94.7
Q ss_pred eecCCCCchHHHHHHHHH--hhccCCCcEEEEcccccHHHHHHHhcC---CCeEEEEeCCHHHHHHHHHHHHhcCCCCCc
Q 041459 36 AFGTGEHATTKLCLLLLQ--SLIKGGELFLDYGTGSGILGIAAIKFG---AAMSVGVDIDPQAIKSAHQNAALNNIGPKK 110 (225)
Q Consensus 36 ~f~~~~~~~~~~~~~~L~--~~~~~~~~vlDiGcGtG~~~~~l~~~~---~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~ 110 (225)
.|..|....+.....+.. -.+++|.+|||++++.|.-+.++++.. ...|+++|+++.-++..++|+...|+.+
T Consensus 132 ~~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-- 209 (355)
T COG0144 132 EFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-- 209 (355)
T ss_pred hhhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc--
Confidence 344454444443333332 236689999999999999988877642 2446999999999999999999999875
Q ss_pred ceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-------------------------HHHH
Q 041459 111 MKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-------------------------LLQL 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------------~~~~ 165 (225)
+.....++..++. ......+||.|+.+.|... ..++
T Consensus 210 v~~~~~d~~~~~~-------------------~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~i 270 (355)
T COG0144 210 VIVVNKDARRLAE-------------------LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEI 270 (355)
T ss_pred eEEEecccccccc-------------------cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHH
Confidence 4455444432210 0002236999999877311 3468
Q ss_pred HHHHHHhccCCeEEEEecc--CCCcHHH-HHHHHHhh
Q 041459 166 ADHIVSYAKPGAVVGISGI--LSEQLPH-IINRYSEF 199 (225)
Q Consensus 166 l~~~~~~LkpgG~l~~~~~--~~~~~~~-~~~~~~~~ 199 (225)
+..+.++|||||.++.++. ...+.++ +...+++.
T Consensus 271 L~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~ 307 (355)
T COG0144 271 LAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERH 307 (355)
T ss_pred HHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhC
Confidence 9999999999999988633 2334444 44455443
No 200
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.56 E-value=1.4e-06 Score=70.63 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=79.2
Q ss_pred HHHHHHhhccCCCc-EEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC--cceEEEecCCCCCc
Q 041459 48 CLLLLQSLIKGGEL-FLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPK--KMKLHLVPDRTFPA 123 (225)
Q Consensus 48 ~~~~L~~~~~~~~~-vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~ 123 (225)
+++.|...+.+... |||||||||-.+.++++ .+.-...-.|.++..+...+..+...++.+- .+.+..... ..+.
T Consensus 14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~-~w~~ 92 (204)
T PF06080_consen 14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAP-PWPW 92 (204)
T ss_pred HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCC-CCcc
Confidence 34555555555554 99999999999998765 6777788999999988777776666665542 122222111 1110
Q ss_pred cccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459 124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.. ..-.....||.|++..++|. ...++..+.++|++||.+++-+.
T Consensus 93 --~~--------------~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 93 --EL--------------PAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred --cc--------------ccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 00 00003468999999666553 45688999999999999998544
No 201
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.55 E-value=3.9e-07 Score=75.22 Aligned_cols=123 Identities=20% Similarity=0.263 Sum_probs=76.1
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh-cCCC---------CCcceEEEecCCCCCccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL-NNIG---------PKKMKLHLVPDRTFPASM 125 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~ 125 (225)
.+++.+||..|||.|.-..++++.|. +|+|+|+|+.+++.+.+.... .... .+.+.+.. ++.+...
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~--gDfF~l~- 110 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC--GDFFELP- 110 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE--S-TTTGG-
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE--cccccCC-
Confidence 34567999999999999999999986 699999999999998432211 1111 01223333 3333110
Q ss_pred cccccccccccccccccCCCCCCceeEEEeccc-----hhHHHHHHHHHHHhccCCeEEEEeccC-----------CCcH
Q 041459 126 NERVDGIVEDLSSHEIRGISETEKYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVGISGIL-----------SEQL 189 (225)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~-----------~~~~ 189 (225)
. ...++||+|+=... .....++++.+.++|+|||.+++.++. .-..
T Consensus 111 ---------~---------~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~ 172 (218)
T PF05724_consen 111 ---------P---------EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTE 172 (218)
T ss_dssp ---------G---------SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----H
T ss_pred ---------h---------hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCH
Confidence 0 02247999987433 345678999999999999995442221 1234
Q ss_pred HHHHHHHHhhh
Q 041459 190 PHIINRYSEFL 200 (225)
Q Consensus 190 ~~~~~~~~~~~ 200 (225)
.++.+.+...|
T Consensus 173 ~ev~~l~~~~f 183 (218)
T PF05724_consen 173 EEVRELFGPGF 183 (218)
T ss_dssp HHHHHHHTTTE
T ss_pred HHHHHHhcCCc
Confidence 55666666554
No 202
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.52 E-value=2.8e-07 Score=75.56 Aligned_cols=114 Identities=14% Similarity=0.055 Sum_probs=89.2
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
....++|+|||-|.+..++...+..+++-+|.|-.|++.++.. ..+++ .+....++-+.+++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i---~~~~~v~DEE~Ldf-------------- 133 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI---ETSYFVGDEEFLDF-------------- 133 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce---EEEEEecchhcccc--------------
Confidence 4568999999999999999888899999999999999998753 22332 23344445444432
Q ss_pred cccccCCCCCCceeEEEeccchhHHH---HHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHH
Q 041459 138 SHEIRGISETEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGISGILSEQLPHIINRYS 197 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~~~---~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 197 (225)
.++++|+|++...+|+.. ..+.++...|||+|.++.+-++.+...+++-.++
T Consensus 134 --------~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slq 188 (325)
T KOG2940|consen 134 --------KENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQ 188 (325)
T ss_pred --------cccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhh
Confidence 678999999998888754 4577888999999999998888888888876665
No 203
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.50 E-value=2e-07 Score=73.28 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=44.2
Q ss_pred cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEec
Q 041459 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVP 117 (225)
Q Consensus 61 ~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~ 117 (225)
.|+|++||.|..++.+|+. ..+|+++|+++..++.|++|+...|+. +++.+...+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~-~~I~~i~gD 56 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVA-DNIDFICGD 56 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-G-GGEEEEES-
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEeCC
Confidence 6899999999999999988 466999999999999999999988875 566666654
No 204
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.49 E-value=8e-07 Score=76.20 Aligned_cols=85 Identities=28% Similarity=0.404 Sum_probs=49.2
Q ss_pred CCcEEEEccccc-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 59 GELFLDYGTGSG-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 59 ~~~vlDiGcGtG-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
..++||||||.. .+.+..++....+++|.|+++.+++.|++|+..| ++. +.+.+........ .+.+++
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~-~~I~l~~~~~~~~------i~~~i~--- 172 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE-SRIELRKQKNPDN------IFDGII--- 172 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T-TTEEEEE--ST-S------STTTST---
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc-cceEEEEcCCccc------cchhhh---
Confidence 357999999986 4456555544678999999999999999999999 776 6777765543211 111111
Q ss_pred ccccccCCCCCCceeEEEeccchhH
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP 161 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~ 161 (225)
...+.||+.+||||++.
T Consensus 173 --------~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 173 --------QPNERFDFTMCNPPFYS 189 (299)
T ss_dssp --------T--S-EEEEEE-----S
T ss_pred --------cccceeeEEecCCcccc
Confidence 13468999999999865
No 205
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.49 E-value=6.6e-07 Score=82.94 Aligned_cols=47 Identities=23% Similarity=0.097 Sum_probs=38.3
Q ss_pred CCcEEEEcccccHHHHHHHhc-C--------CCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 59 GELFLDYGTGSGILGIAAIKF-G--------AAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~-~--------~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
..+|+|.|||+|.+...++.. . ...++|+|+++.++..|+.++...+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 458999999999998876542 1 1568999999999999999887554
No 206
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.47 E-value=1.3e-06 Score=72.97 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=66.1
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
...++||+|+|.|..+..++.. ..++++.|.|+.|....+ ..|+. +. +...+..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~----~kg~~-----vl--~~~~w~~-------------- 147 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLS----KKGFT-----VL--DIDDWQQ-------------- 147 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHH----hCCCe-----EE--ehhhhhc--------------
Confidence 4568999999999999998775 566999999999965443 34533 21 1111210
Q ss_pred cccccCCCCCCceeEEEeccchh---HHHHHHHHHHHhccCCeEEEEe
Q 041459 138 SHEIRGISETEKYDVVIANILLN---PLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~---~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.+.+||+|.|-..++ .+..+++.+++.|+|+|++++.
T Consensus 148 --------~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 148 --------TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred --------cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 345799999955543 3677899999999999999873
No 207
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.46 E-value=1.6e-06 Score=72.36 Aligned_cols=94 Identities=21% Similarity=0.325 Sum_probs=69.5
Q ss_pred CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
...+|+|+|+|+|.++..+++ ++..+++..|. |.+++.+++ .+++.+..++ .+..
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd--~f~~------------- 155 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGD--FFDP------------- 155 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES---TTTC-------------
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------cccccccccc--HHhh-------------
Confidence 456899999999999998765 68889999998 889988887 1345555443 3210
Q ss_pred ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCC--eEEEEeccC
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPG--AVVGISGIL 185 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~Lkpg--G~l~~~~~~ 185 (225)
.+. +|+++....++. -..+++++++.|+|| |.|++.+..
T Consensus 156 ---------~P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 156 ---------LPV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp ---------CSS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred ---------hcc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 233 999999777755 456899999999999 999987664
No 208
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.46 E-value=1.3e-06 Score=69.61 Aligned_cols=121 Identities=17% Similarity=0.280 Sum_probs=69.9
Q ss_pred CCcEEEEcccccHHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 59 GELFLDYGTGSGILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
+.+++|+||++|.++..+++.+ ..+++|+|+.+. ....+ .....++....+..+.+...+.
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~----~~~i~~d~~~~~~~~~i~~~~~-- 86 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQN----VSFIQGDITNPENIKDIRKLLP-- 86 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TT----EEBTTGGGEEEEHSHHGGGSHG--
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccc----eeeeecccchhhHHHhhhhhcc--
Confidence 4899999999999999999876 688999999885 11111 1111111110000011111100
Q ss_pred ccccccCCCCCCceeEEEeccch-----------hHH---HHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhhhh
Q 041459 137 SSHEIRGISETEKYDVVIANILL-----------NPL---LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLED 202 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~-----------~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (225)
.....+|+|+++... ... ...+.-+...|+|||.+++..+......++...++..|..
T Consensus 87 --------~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~ 158 (181)
T PF01728_consen 87 --------ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSK 158 (181)
T ss_dssp --------TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHH
T ss_pred --------ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeE
Confidence 023689999998732 111 2234556678999999888766654445888777777654
Q ss_pred hc
Q 041459 203 IL 204 (225)
Q Consensus 203 ~~ 204 (225)
+.
T Consensus 159 v~ 160 (181)
T PF01728_consen 159 VK 160 (181)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 209
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.46 E-value=3.7e-06 Score=72.29 Aligned_cols=48 Identities=25% Similarity=0.287 Sum_probs=41.4
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHHh
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
+.++..++|.+||.|..+..+++.. ..+|+|+|.++.+++.|++++..
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 3577899999999999999988753 57899999999999999987643
No 210
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.43 E-value=4.3e-06 Score=67.90 Aligned_cols=135 Identities=19% Similarity=0.222 Sum_probs=77.6
Q ss_pred HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccc
Q 041459 46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASM 125 (225)
Q Consensus 46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (225)
..++++|... .++..|.|+|||.+.++..+. . ...|...|+... +. . +..-+....|-
T Consensus 61 d~iI~~l~~~-~~~~viaD~GCGdA~la~~~~-~-~~~V~SfDLva~-----------n~----~--Vtacdia~vPL-- 118 (219)
T PF05148_consen 61 DVIIEWLKKR-PKSLVIADFGCGDAKLAKAVP-N-KHKVHSFDLVAP-----------NP----R--VTACDIANVPL-- 118 (219)
T ss_dssp HHHHHHHCTS--TTS-EEEES-TT-HHHHH---S----EEEEESS-S-----------ST----T--EEES-TTS-S---
T ss_pred HHHHHHHHhc-CCCEEEEECCCchHHHHHhcc-c-CceEEEeeccCC-----------CC----C--EEEecCccCcC--
Confidence 3445555443 235799999999999985533 2 245888887551 11 1 22222222221
Q ss_pred cccccccccccccccccCCCCCCceeEEEeccch--hHHHHHHHHHHHhccCCeEEEEeccCC--CcHHHHHHHHHhh-h
Q 041459 126 NERVDGIVEDLSSHEIRGISETEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGILS--EQLPHIINRYSEF-L 200 (225)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~-~ 200 (225)
+++.+|+++++..+ ..+.+++.++.|.||+||.+.+.++.. .+...+.+.+... |
T Consensus 119 --------------------~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF 178 (219)
T PF05148_consen 119 --------------------EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGF 178 (219)
T ss_dssp ---------------------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTE
T ss_pred --------------------CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCC
Confidence 57789999887554 568899999999999999999977643 4666677777765 6
Q ss_pred hhhcccccC-CceEEEeeeeccc
Q 041459 201 EDILLSEMD-DWTCVSGTKKRAK 222 (225)
Q Consensus 201 ~~~~~~~~~-~w~~~~~~k~~~~ 222 (225)
........+ -+..+.++|.+.+
T Consensus 179 ~~~~~d~~n~~F~~f~F~K~~~~ 201 (219)
T PF05148_consen 179 KLKSKDESNKHFVLFEFKKIRKK 201 (219)
T ss_dssp EEEEEE--STTEEEEEEEE-SSS
T ss_pred eEEecccCCCeEEEEEEEEcCcc
Confidence 655544444 3577888877643
No 211
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.43 E-value=2.2e-06 Score=73.26 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=76.6
Q ss_pred CcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCcceEEEecCCCCCcccccccccccccc
Q 041459 60 ELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNN--IGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
++||-+|.|.|..+..+++. +..+++.||+++.+++.|++-+.... ....++.+...|+..+ |..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~-----------v~~- 145 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF-----------LRD- 145 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH-----------HHh-
Confidence 69999999999999998875 57899999999999999998876433 1124556666555322 111
Q ss_pred ccccccCCCCCCceeEEEeccchh--H-----HHHHHHHHHHhccCCeEEEEe
Q 041459 137 SSHEIRGISETEKYDVVIANILLN--P-----LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~--~-----~~~~l~~~~~~LkpgG~l~~~ 182 (225)
..++||+|+++..-. + -.++.+.+.+.|+++|+++..
T Consensus 146 ---------~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 146 ---------CEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred ---------CCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 233899999964322 2 367899999999999999986
No 212
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.42 E-value=6.5e-06 Score=67.26 Aligned_cols=115 Identities=17% Similarity=0.227 Sum_probs=79.1
Q ss_pred EEEEcccccHHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccccc
Q 041459 62 FLDYGTGSGILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHE 140 (225)
Q Consensus 62 vlDiGcGtG~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (225)
|+|+||.-|.++++|.+.+. .+++++|+++..++.|++++...++. +++.+..+++-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~-~~i~~rlgdGL~-------------------- 59 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE-DRIEVRLGDGLE-------------------- 59 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T-TTEEEEE-SGGG--------------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc-ccEEEEECCccc--------------------
Confidence 68999999999999998764 67999999999999999999999887 578888776521
Q ss_pred ccCCCCCCceeEEEeccch-hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hh
Q 041459 141 IRGISETEKYDVVIANILL-NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LE 201 (225)
Q Consensus 141 ~~~~~~~~~~DvIi~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~ 201 (225)
.+.+.+..|+|+...+- ..+.++++.....++....+++. .......+++.+.+. |.
T Consensus 60 --~l~~~e~~d~ivIAGMGG~lI~~ILe~~~~~~~~~~~lILq--P~~~~~~LR~~L~~~gf~ 118 (205)
T PF04816_consen 60 --VLKPGEDVDTIVIAGMGGELIIEILEAGPEKLSSAKRLILQ--PNTHAYELRRWLYENGFE 118 (205)
T ss_dssp --G--GGG---EEEEEEE-HHHHHHHHHHTGGGGTT--EEEEE--ESS-HHHHHHHHHHTTEE
T ss_pred --ccCCCCCCCEEEEecCCHHHHHHHHHhhHHHhccCCeEEEe--CCCChHHHHHHHHHCCCE
Confidence 12233437877765554 55678888888777777677774 235677777777765 54
No 213
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.40 E-value=5.1e-07 Score=71.87 Aligned_cols=96 Identities=22% Similarity=0.355 Sum_probs=76.1
Q ss_pred CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459 59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS 138 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (225)
.+.+.|+|+|+|.++..+++. +.++++++.+|.-.+.|.+|+..++..+ +.+..+++...
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n--~evv~gDA~~y----------------- 92 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVN--WEVVVGDARDY----------------- 92 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcc--eEEEecccccc-----------------
Confidence 478999999999999998888 7889999999999999999998777654 66666655443
Q ss_pred ccccCCCCCCceeEEEeccch-----hHHHHHHHHHHHhccCCeEEEE
Q 041459 139 HEIRGISETEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 139 ~~~~~~~~~~~~DvIi~~~~~-----~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
.-...|+|+|.+.- +.....+..+...|+.++.++-
T Consensus 93 -------~fe~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 93 -------DFENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred -------cccccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 33567999985432 2345678888889999999875
No 214
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.38 E-value=2.3e-05 Score=66.64 Aligned_cols=106 Identities=14% Similarity=0.143 Sum_probs=78.0
Q ss_pred CCCcEEEEcccccHHHHHHH-hcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAI-KFG--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~-~~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
...+|+||+||.|...+.+. ..+ ..++...|+++..++..++.+...++.+ .+++...++ +.. +....
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~-i~~f~~~dA--fd~---~~l~~--- 205 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLED-IARFEQGDA--FDR---DSLAA--- 205 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-ceEEEecCC--CCH---hHhhc---
Confidence 34699999999998887654 444 3789999999999999999999999883 345665553 311 00000
Q ss_pred ccccccccCCCCCCceeEEEeccchhH------HHHHHHHHHHhccCCeEEEEec
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNP------LLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
.....++++++..++- ....+..+..++.|||+++.++
T Consensus 206 -----------l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 206 -----------LDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred -----------cCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 2445788888776643 4457889999999999999975
No 215
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=5.1e-06 Score=72.50 Aligned_cols=146 Identities=18% Similarity=0.256 Sum_probs=102.3
Q ss_pred cCceEEeeCCCCCCCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHH-hcCCCeEEEE
Q 041459 9 TKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAI-KFGAAMSVGV 87 (225)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~-~~~~~~v~~v 87 (225)
|+.++.+|.-.... ....++.++|.|.| .+......+..+.... ..+|+|.-+|||.-++-.+ +.+..+++.-
T Consensus 9 G~~~i~vP~~~~~~-~~~~pVFYNP~m~~---NRDlsV~~l~~~~~~~--~~~v~DalsatGiRgIRya~E~~~~~v~lN 82 (380)
T COG1867 9 GSAKIYVPDPYKGG-SKRAPVFYNPAMEF---NRDLSVLVLKAFGKLL--PKRVLDALSATGIRGIRYAVETGVVKVVLN 82 (380)
T ss_pred CceEEEcCCCCCCC-CCCCcceeCchhhh---ccchhHHHHHHhhccC--CeEEeecccccchhHhhhhhhcCccEEEEc
Confidence 55566666643332 34458889999998 4555555555553221 7899999999999999755 4566589999
Q ss_pred eCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHH
Q 041459 88 DIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLAD 167 (225)
Q Consensus 88 Di~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~ 167 (225)
|+||.+.+.++.|+..|... .......|++.+ +.. ....||+|=.+| +..+..+++
T Consensus 83 Disp~Avelik~Nv~~N~~~--~~~v~n~DAN~l-------m~~--------------~~~~fd~IDiDP-FGSPaPFlD 138 (380)
T COG1867 83 DISPKAVELIKENVRLNSGE--DAEVINKDANAL-------LHE--------------LHRAFDVIDIDP-FGSPAPFLD 138 (380)
T ss_pred cCCHHHHHHHHHHHHhcCcc--cceeecchHHHH-------HHh--------------cCCCccEEecCC-CCCCchHHH
Confidence 99999999999999988322 223333333222 000 236799997765 666778888
Q ss_pred HHHHhccCCeEEEEecc
Q 041459 168 HIVSYAKPGAVVGISGI 184 (225)
Q Consensus 168 ~~~~~LkpgG~l~~~~~ 184 (225)
.+.+.++.||+++++..
T Consensus 139 aA~~s~~~~G~l~vTAT 155 (380)
T COG1867 139 AALRSVRRGGLLCVTAT 155 (380)
T ss_pred HHHHHhhcCCEEEEEec
Confidence 99999999999999643
No 216
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.32 E-value=4e-06 Score=67.38 Aligned_cols=96 Identities=20% Similarity=0.171 Sum_probs=73.4
Q ss_pred cEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccc
Q 041459 61 LFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSH 139 (225)
Q Consensus 61 ~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (225)
+++|+|+|.|.-++.++- .+..+++.+|.+..-+...+......++.+ +.+...+.+..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n--v~v~~~R~E~~------------------ 110 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN--VEVINGRAEEP------------------ 110 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS--EEEEES-HHHT------------------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC--EEEEEeeeccc------------------
Confidence 899999999999988764 577889999999999999988888888875 55555443321
Q ss_pred cccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 140 EIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 140 ~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
....+||+|++... ..+..+++.+..++++||.+++.
T Consensus 111 -----~~~~~fd~v~aRAv-~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 111 -----EYRESFDVVTARAV-APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp -----TTTT-EEEEEEESS-SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred -----ccCCCccEEEeehh-cCHHHHHHHHHHhcCCCCEEEEE
Confidence 05678999998653 35667788888999999998874
No 217
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.31 E-value=3e-06 Score=71.10 Aligned_cols=80 Identities=19% Similarity=0.313 Sum_probs=61.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+++++.|||+|.|||.++..+.+.+. +|+|+|++|.|+...+++....... .+.++..+|.-..
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~-~kLqV~~gD~lK~-------------- 119 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKS-GKLQVLHGDFLKT-------------- 119 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCcc-ceeeEEecccccC--------------
Confidence 67889999999999999999999864 5999999999999998887644433 2344444333221
Q ss_pred cccccccCCCCCCceeEEEeccchhH
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP 161 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~ 161 (225)
+...||++++|.|+..
T Consensus 120 ----------d~P~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 120 ----------DLPRFDGCVSNLPYQI 135 (315)
T ss_pred ----------CCcccceeeccCCccc
Confidence 3467999999998754
No 218
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.4e-05 Score=67.28 Aligned_cols=93 Identities=17% Similarity=0.138 Sum_probs=68.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+.+++.|||||+|.|.++..+++.+.. ++++|+++.++...++... ..+++.+..+|.-....
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~-v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d~------------ 90 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAAR-VTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFDF------------ 90 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCe-EEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCcc------------
Confidence 446789999999999999999998655 9999999999999887754 11346666666544311
Q ss_pred cccccccCCCCCC-ceeEEEeccchhHHHHHHHHHHHhccC
Q 041459 136 LSSHEIRGISETE-KYDVVIANILLNPLLQLADHIVSYAKP 175 (225)
Q Consensus 136 ~~~~~~~~~~~~~-~~DvIi~~~~~~~~~~~l~~~~~~Lkp 175 (225)
+.. .++.|++|.||+.-..++.++...-..
T Consensus 91 ----------~~l~~~~~vVaNlPY~Isspii~kll~~~~~ 121 (259)
T COG0030 91 ----------PSLAQPYKVVANLPYNISSPILFKLLEEKFI 121 (259)
T ss_pred ----------hhhcCCCEEEEcCCCcccHHHHHHHHhccCc
Confidence 111 679999999998777776666555333
No 219
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.26 E-value=3.5e-06 Score=67.53 Aligned_cols=100 Identities=28% Similarity=0.321 Sum_probs=71.3
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
.|++|||+|+|+|..++.+++.|+.++++.|+.|-..+.++.|++.|++. +.+...+.-.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~---i~~~~~d~~g----------------- 138 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS---ILFTHADLIG----------------- 138 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce---eEEeeccccC-----------------
Confidence 58999999999999999999999999999999999999999999998865 2222221111
Q ss_pred cccccCCCCCCceeEEEeccch-hH--HHHHHHHHHHhccCCeE-EEEeccCC
Q 041459 138 SHEIRGISETEKYDVVIANILL-NP--LLQLADHIVSYAKPGAV-VGISGILS 186 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~-~~--~~~~l~~~~~~LkpgG~-l~~~~~~~ 186 (225)
++..+|+++..-.+ ++ ...++. +...|+..|. +++.+..+
T Consensus 139 --------~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 139 --------SPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred --------CCcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 46679999885443 22 234455 5555555554 55545544
No 220
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.25 E-value=9.6e-06 Score=63.49 Aligned_cols=106 Identities=14% Similarity=0.169 Sum_probs=73.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
...|.-|||+|.|||.++..+.+.+ ...++++|.|+.......+...... +..+++-.+. .-+..
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~-------ii~gda~~l~----~~l~e-- 112 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVN-------IINGDAFDLR----TTLGE-- 112 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCcc-------ccccchhhHH----HHHhh--
Confidence 4468899999999999999988764 4679999999998877765543221 2222221110 00111
Q ss_pred cccccccccCCCCCCceeEEEeccch-----hHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
.....||.|+|..|+ +-..++++.+...|..||.++-...+
T Consensus 113 -----------~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 113 -----------HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred -----------cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 146679999996654 44567899999999999999875444
No 221
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.24 E-value=8.5e-06 Score=69.85 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=91.5
Q ss_pred eecCCCCchHHHHHHHHH--hhccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcc
Q 041459 36 AFGTGEHATTKLCLLLLQ--SLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKM 111 (225)
Q Consensus 36 ~f~~~~~~~~~~~~~~L~--~~~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~ 111 (225)
.|..|....+.....+.. -.+.++..|||++++.|+-+.+++.. ....+++.|+++.-+...+.++...|+.+ +
T Consensus 61 ~~~~G~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~--v 138 (283)
T PF01189_consen 61 EFKNGLFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN--V 138 (283)
T ss_dssp HHHTTSEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS--E
T ss_pred hhhCCcEEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce--E
Confidence 344455544444333322 23567899999999999999888764 36789999999999999999999888764 3
Q ss_pred eEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-------------------------HHHHHH
Q 041459 112 KLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-------------------------PLLQLA 166 (225)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------------------------~~~~~l 166 (225)
.....+.... .... ....||.|+.+.|.. ...+++
T Consensus 139 ~~~~~D~~~~-------~~~~-------------~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL 198 (283)
T PF01189_consen 139 IVINADARKL-------DPKK-------------PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREIL 198 (283)
T ss_dssp EEEESHHHHH-------HHHH-------------HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHH
T ss_pred EEEeeccccc-------cccc-------------cccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHH
Confidence 3333222111 0000 234699999987721 034689
Q ss_pred HHHHHhc----cCCeEEEEecc--CCCcHHHHHHHH
Q 041459 167 DHIVSYA----KPGAVVGISGI--LSEQLPHIINRY 196 (225)
Q Consensus 167 ~~~~~~L----kpgG~l~~~~~--~~~~~~~~~~~~ 196 (225)
..+.+++ ||||+++.++- ..++.++..+.+
T Consensus 199 ~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~f 234 (283)
T PF01189_consen 199 DNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKF 234 (283)
T ss_dssp HHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHH
T ss_pred HHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHH
Confidence 9999999 99999887533 234444444433
No 222
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.21 E-value=6e-05 Score=61.61 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=95.4
Q ss_pred HHHHHhhccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459 49 LLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 49 ~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
+..+..+++.+..++|+||--++++.++.+. ....++++|+++..++.|.+++..+++. +++....+++-
T Consensus 7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~-~~i~vr~~dgl-------- 77 (226)
T COG2384 7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS-ERIDVRLGDGL-------- 77 (226)
T ss_pred HHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc-ceEEEeccCCc--------
Confidence 3445566778888999999999999998875 6788999999999999999999999987 56777766652
Q ss_pred cccccccccccccccCCCCCCceeEEEeccchh-HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLN-PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
..++.+..+|+++...+-. -+.+++++-.+-|+.--.+++. .......+++.+...
T Consensus 78 --------------~~l~~~d~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQ--Pn~~~~~LR~~L~~~ 134 (226)
T COG2384 78 --------------AVLELEDEIDVIVIAGMGGTLIREILEEGKEKLKGVERLILQ--PNIHTYELREWLSAN 134 (226)
T ss_pred --------------cccCccCCcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEEC--CCCCHHHHHHHHHhC
Confidence 1233566799888876654 4677888888887755556663 445667777777765
No 223
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.17 E-value=4.6e-05 Score=66.33 Aligned_cols=125 Identities=10% Similarity=0.055 Sum_probs=73.5
Q ss_pred ccCCCcEEEEcccccHHHHHHHh----c-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIK----F-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVD 130 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~----~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
+.++..++|+|||+|.-+..+.+ . ....|+++|+|..+|+.+..++....+..-.+....++-... .
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~--------l 145 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG--------L 145 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH--------H
Confidence 44677899999999977655432 1 245799999999999999988873343321122222221110 0
Q ss_pred ccccccccccccCCCCCCceeEEEe------ccchhHHHHHHHHHHH-hccCCeEEEEeccCCCcHHHHHHHH
Q 041459 131 GIVEDLSSHEIRGISETEKYDVVIA------NILLNPLLQLADHIVS-YAKPGAVVGISGILSEQLPHIINRY 196 (225)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~DvIi~------~~~~~~~~~~l~~~~~-~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (225)
.++. .-.......+++. |+....-..++..+.+ .|+|||.+++.-....+...+...|
T Consensus 146 ~~l~--------~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY 210 (319)
T TIGR03439 146 AWLK--------RPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAY 210 (319)
T ss_pred hhcc--------cccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHh
Confidence 0000 0001122355544 3444455678899999 9999999988644444444444444
No 224
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.12 E-value=4.6e-05 Score=67.53 Aligned_cols=119 Identities=17% Similarity=0.132 Sum_probs=85.2
Q ss_pred ccCCCcEEEEcccccHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIK--FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~--~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|.+|||+++.+|.-+.++|. .....|+|.|.+..-+...+.|+...|+.+ ..+...++..++..
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n--tiv~n~D~~ef~~~--------- 307 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN--TIVSNYDGREFPEK--------- 307 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc--eEEEccCccccccc---------
Confidence 56899999999999977777654 345679999999999999999999999875 33445555444210
Q ss_pred cccccccccCCCCCCceeEEEeccch-------------------------hHHHHHHHHHHHhccCCeEEEEecc--CC
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILL-------------------------NPLLQLADHIVSYAKPGAVVGISGI--LS 186 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~--~~ 186 (225)
..+. +||-|..+.|. +-.++++..+.+++++||+++.|+- ..
T Consensus 308 ----------~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 308 ----------EFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred ----------ccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 0123 79999886552 1135789999999999999998632 33
Q ss_pred CcHHHHHHHH
Q 041459 187 EQLPHIINRY 196 (225)
Q Consensus 187 ~~~~~~~~~~ 196 (225)
++.+...+..
T Consensus 377 ~ENE~vV~ya 386 (460)
T KOG1122|consen 377 EENEAVVDYA 386 (460)
T ss_pred hhhHHHHHHH
Confidence 4444444443
No 225
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.11 E-value=4.6e-05 Score=62.28 Aligned_cols=108 Identities=23% Similarity=0.281 Sum_probs=58.3
Q ss_pred ccCCCcEEEEcccccHHHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHH-------hcCCCCCcceEEEecCCCCCccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAI-KFGAAMSVGVDIDPQAIKSAHQNAA-------LNNIGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~-~~~~~~v~~vDi~~~~l~~a~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
+.++..++|+|||.|...+.++ ..+..+.+|+|+.+...+.|+.... ..+....++.+. .++.+..+...
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~--~gdfl~~~~~~ 117 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELI--HGDFLDPDFVK 117 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEE--CS-TTTHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceee--ccCccccHhHh
Confidence 5578899999999999888755 4578889999999998888765443 233333333333 44333111000
Q ss_pred cccccccccccccccCCCCCCceeEEEecc-chh-HHHHHHHHHHHhccCCeEEEEe
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANI-LLN-PLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~-~~~-~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
. .-...|+|++|. .++ .+...+......||+|..++-+
T Consensus 118 ---~--------------~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 118 ---D--------------IWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp ---H--------------HGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred ---h--------------hhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 0 013469999964 443 3444566777789999887754
No 226
>PRK04148 hypothetical protein; Provisional
Probab=98.10 E-value=5e-05 Score=57.76 Aligned_cols=97 Identities=10% Similarity=0.055 Sum_probs=60.8
Q ss_pred CCCcEEEEcccccH-HHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGI-LGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~-~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
++.+++|+|||+|. ++..+++.|. .|+++|+++.+++.++.+ +. .....|.-...
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~----~~-----~~v~dDlf~p~-------------- 71 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL----GL-----NAFVDDLFNPN-------------- 71 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh----CC-----eEEECcCCCCC--------------
Confidence 45789999999996 8888888764 699999999998888765 21 12222221110
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCC
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSE 187 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 187 (225)
..--..+|+|.+..|...+...+-++.+.+ |.-+++.....+
T Consensus 72 -------~~~y~~a~liysirpp~el~~~~~~la~~~--~~~~~i~~l~~e 113 (134)
T PRK04148 72 -------LEIYKNAKLIYSIRPPRDLQPFILELAKKI--NVPLIIKPLSGE 113 (134)
T ss_pred -------HHHHhcCCEEEEeCCCHHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence 002356899999655554554444555443 444555444443
No 227
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.10 E-value=1.4e-05 Score=65.56 Aligned_cols=115 Identities=18% Similarity=0.178 Sum_probs=82.9
Q ss_pred CCcEEEEcccccHHHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 59 GELFLDYGTGSGILGIAAI-KFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~-~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
+++++|+|+|.|.-++.++ ..+..+++-+|....-+...+......+++| +++.....+.+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n--v~i~~~RaE~~~--------------- 130 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN--VEIVHGRAEEFG--------------- 130 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC--eEEehhhHhhcc---------------
Confidence 5899999999999999877 5666779999999988888888888888765 667666665552
Q ss_pred cccccCCCCCCc-eeEEEeccchhHHHHHHHHHHHhccCCeEEEEe--ccCCCcHHHHHHHHHhh
Q 041459 138 SHEIRGISETEK-YDVVIANILLNPLLQLADHIVSYAKPGAVVGIS--GILSEQLPHIINRYSEF 199 (225)
Q Consensus 138 ~~~~~~~~~~~~-~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~--~~~~~~~~~~~~~~~~~ 199 (225)
+... ||+|++.. +..+..+.+-+..++|+||.+++- .-..++..+..+.....
T Consensus 131 --------~~~~~~D~vtsRA-va~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~ 186 (215)
T COG0357 131 --------QEKKQYDVVTSRA-VASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPL 186 (215)
T ss_pred --------cccccCcEEEeeh-ccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhh
Confidence 2233 99998744 445667777888999998886531 22344555555555443
No 228
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.08 E-value=8.6e-06 Score=73.70 Aligned_cols=124 Identities=17% Similarity=0.201 Sum_probs=73.4
Q ss_pred ceecCCCCchHHHHHHHHHhhccCC--CcEEEEcccccHHHHHHHhcCCCeE--EEEeCCHHHHHHHHHHHHhcCCCCCc
Q 041459 35 LAFGTGEHATTKLCLLLLQSLIKGG--ELFLDYGTGSGILGIAAIKFGAAMS--VGVDIDPQAIKSAHQNAALNNIGPKK 110 (225)
Q Consensus 35 ~~f~~~~~~~~~~~~~~L~~~~~~~--~~vlDiGcGtG~~~~~l~~~~~~~v--~~vDi~~~~l~~a~~~~~~~~~~~~~ 110 (225)
-.|..|-..+...+.+++......| -++||+|||+|+++.+|...+...+ ..-|..+..++.|.+ .|+..
T Consensus 92 t~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale----RGvpa-- 165 (506)
T PF03141_consen 92 TMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE----RGVPA-- 165 (506)
T ss_pred ccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh----cCcch--
Confidence 4555555555555555554322233 2679999999999999888764322 112334444444432 23321
Q ss_pred ceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHH----HHHHHHHHHhccCCeEEEEeccCC
Q 041459 111 MKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL----LQLADHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~~ 186 (225)
.+-......+++ +.+.||+|.|...+.+. --++-++.|+|+|||+++++....
T Consensus 166 -~~~~~~s~rLPf----------------------p~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 166 -MIGVLGSQRLPF----------------------PSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred -hhhhhccccccC----------------------CccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 011111122222 68899999996654321 135778899999999999987754
Q ss_pred C
Q 041459 187 E 187 (225)
Q Consensus 187 ~ 187 (225)
.
T Consensus 223 ~ 223 (506)
T PF03141_consen 223 Y 223 (506)
T ss_pred c
Confidence 3
No 229
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.07 E-value=3.4e-05 Score=67.35 Aligned_cols=173 Identities=17% Similarity=0.255 Sum_probs=100.4
Q ss_pred eeEEecccceecCCCC-chHH-HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHh
Q 041459 27 TNIILNPGLAFGTGEH-ATTK-LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 27 ~~~~~~~~~~f~~~~~-~~~~-~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
..+-+|-++.|+|... -+.. ++.-.+ +.++...++|-+|.|.|.....+.+++ ..+++-+|.+|.|++.++++...
T Consensus 257 ~rLYldG~LQfsTrDe~RYhEsLV~pal-s~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vl 335 (508)
T COG4262 257 LRLYLDGGLQFSTRDEYRYHESLVYPAL-SSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVL 335 (508)
T ss_pred eEEEEcCceeeeechhhhhhheeeeccc-ccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHh
Confidence 3444566677766322 1111 111111 223445789999999999999999987 78999999999999999966543
Q ss_pred cCCCC---CcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--------HHHHHHHHHHh
Q 041459 104 NNIGP---KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------LLQLADHIVSY 172 (225)
Q Consensus 104 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------~~~~l~~~~~~ 172 (225)
..++. ...++.....+ .+.|+.. ..+.||+||.+.+-.. -.++-.-+.+.
T Consensus 336 r~~N~~sf~dpRv~Vv~dD---------Af~wlr~----------a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~ 396 (508)
T COG4262 336 RALNQGSFSDPRVTVVNDD---------AFQWLRT----------AADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRH 396 (508)
T ss_pred hhhccCCccCCeeEEEecc---------HHHHHHh----------hcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHh
Confidence 32221 22333333222 2223211 3458999999765321 23455667789
Q ss_pred ccCCeEEEEeccC----CCcHHHHHHHHHhh-hh----hhcccccCCceEEEeeee
Q 041459 173 AKPGAVVGISGIL----SEQLPHIINRYSEF-LE----DILLSEMDDWTCVSGTKK 219 (225)
Q Consensus 173 LkpgG~l~~~~~~----~~~~~~~~~~~~~~-~~----~~~~~~~~~w~~~~~~k~ 219 (225)
|+++|.+++..-. .+-...+...++.. +. .+-+-+-|+|--....+-
T Consensus 397 l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~~ 452 (508)
T COG4262 397 LAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAPG 452 (508)
T ss_pred cCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCcccccceeecccc
Confidence 9999999984221 12222233333332 21 333456788865544443
No 230
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.07 E-value=6.9e-05 Score=62.66 Aligned_cols=120 Identities=16% Similarity=0.223 Sum_probs=76.9
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
....|.|+|||-+.++. .-...|+..|+.+ .+ +.+... +....|.
T Consensus 180 ~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a--------------~~-~~V~~c--Dm~~vPl-------------- 224 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----SERHKVHSFDLVA--------------VN-ERVIAC--DMRNVPL-------------- 224 (325)
T ss_pred CceEEEecccchhhhhh----ccccceeeeeeec--------------CC-Cceeec--cccCCcC--------------
Confidence 35689999999998776 2234578888643 11 112111 1111211
Q ss_pred cccccCCCCCCceeEEEeccch--hHHHHHHHHHHHhccCCeEEEEeccCC--CcHHHHHHHHHhh-hhhhcccccCC-c
Q 041459 138 SHEIRGISETEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGILS--EQLPHIINRYSEF-LEDILLSEMDD-W 211 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~-w 211 (225)
++++.|+++++..+ ..+.+++.++++.||+||.+++.++.. .+...+.+.+... |+.......+. +
T Consensus 225 --------~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~n~~F 296 (325)
T KOG3045|consen 225 --------EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVSNKYF 296 (325)
T ss_pred --------ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhhcceE
Confidence 57889998886543 568899999999999999999987753 3445566666655 65444443433 5
Q ss_pred eEEEeeeec
Q 041459 212 TCVSGTKKR 220 (225)
Q Consensus 212 ~~~~~~k~~ 220 (225)
..+.+.|.+
T Consensus 297 ~lfefkK~~ 305 (325)
T KOG3045|consen 297 TLFEFKKTP 305 (325)
T ss_pred EEEEEecCC
Confidence 677777765
No 231
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=9.8e-05 Score=62.14 Aligned_cols=103 Identities=18% Similarity=0.151 Sum_probs=76.4
Q ss_pred ccCCCcEEEEcccccHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIK--FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~--~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|.+|+|-|+|+|.++-++++ .+..+++..|+-..-.+.|.+-.+.+++. +.+.+...|.-...+. .
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~-~~vt~~hrDVc~~GF~-------~- 173 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG-DNVTVTHRDVCGSGFL-------I- 173 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC-cceEEEEeecccCCcc-------c-
Confidence 56899999999999999999887 36788999999999999999999999977 5666665543221110 0
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCe-EEEE
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGA-VVGI 181 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG-~l~~ 181 (225)
....+|.|+.+.|-.+ ..+..+++.||.+| ++|.
T Consensus 174 ------------ks~~aDaVFLDlPaPw--~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 174 ------------KSLKADAVFLDLPAPW--EAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred ------------cccccceEEEcCCChh--hhhhhhHHHhhhcCceEEe
Confidence 3678999998876553 34566667888876 4443
No 232
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=5.9e-05 Score=60.16 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=78.9
Q ss_pred ccCCCcEEEEcccccHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe-cCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIK--FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV-PDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~--~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 132 (225)
++++.+|||+||.+|..+..+.+ ++...+.|+|+-+- .+-.|.. ...+ +.... .....+++.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~Ga~-----~i~~~dvtdp--~~~~ki~e~ 131 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPEGAT-----IIQGNDVTDP--ETYRKIFEA 131 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCCCcc-----cccccccCCH--HHHHHHHHh
Confidence 56899999999999999998775 47788999998541 1122221 1111 11111 011111111
Q ss_pred ccccccccccCCCCCCceeEEEeccch--------hHHH------HHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILL--------NPLL------QLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~--------~~~~------~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
.+....|+|++++.. ++.+ ..+--....++|+|.+++..+..++...+.+.+..
T Consensus 132 ------------lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~ 199 (232)
T KOG4589|consen 132 ------------LPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQA 199 (232)
T ss_pred ------------CCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHH
Confidence 166789999997653 2221 22344557789999999988888899999999988
Q ss_pred hhhhhc
Q 041459 199 FLEDIL 204 (225)
Q Consensus 199 ~~~~~~ 204 (225)
.|..+.
T Consensus 200 ~f~~Vk 205 (232)
T KOG4589|consen 200 VFTNVK 205 (232)
T ss_pred HhhhcE
Confidence 775444
No 233
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.01 E-value=0.00014 Score=62.08 Aligned_cols=116 Identities=19% Similarity=0.166 Sum_probs=71.7
Q ss_pred CCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.+.+|||+|||+|+.+..+... ...+++++|.|+.|++.++..+.... ......... .+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~-~~~~~~~~~----~~-------------- 93 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP-NNRNAEWRR----VL-------------- 93 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc-ccccchhhh----hh--------------
Confidence 4679999999999766555442 35679999999999999988654322 111000000 00
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
.....+....|+|++...+.. ...+++.+.+.+++ .+++.+.++..........++.
T Consensus 94 -----~~~~~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~ 155 (274)
T PF09243_consen 94 -----YRDFLPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQ 155 (274)
T ss_pred -----hcccccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHH
Confidence 000002233499999766533 34567777776655 8888888876666655555544
No 234
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.94 E-value=0.0002 Score=60.66 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=69.2
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++..|+|+|+|+|.++..+++.+ .+++++|+++...+..++... ...++.+...|...+.. .. .
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~----~~~~~~vi~~D~l~~~~--~~---~----- 93 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA----SNPNVEVINGDFLKWDL--YD---L----- 93 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT----TCSSEEEEES-TTTSCG--GG---H-----
T ss_pred CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh----hcccceeeecchhcccc--HH---h-----
Confidence 368999999999999999999887 889999999999988887654 22456677666554411 00 0
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccC
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKP 175 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkp 175 (225)
.......|++|.|+..-..++.++...-+.
T Consensus 94 ---------~~~~~~~vv~NlPy~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 94 ---------LKNQPLLVVGNLPYNISSPILRKLLELYRF 123 (262)
T ss_dssp ---------CSSSEEEEEEEETGTGHHHHHHHHHHHGGG
T ss_pred ---------hcCCceEEEEEecccchHHHHHHHhhcccc
Confidence 123567899999997777777777764444
No 235
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.93 E-value=5.3e-05 Score=63.87 Aligned_cols=126 Identities=19% Similarity=0.195 Sum_probs=68.1
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC---cceE-EEecCCCCCc-ccccccc--
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK---KMKL-HLVPDRTFPA-SMNERVD-- 130 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~---~~~~-~~~~~~~~~~-~~~~~~~-- 130 (225)
+|.++||+|||+-.+....+.....+|+..|..+...+..++=+...+ ..+ .+.. ....+..-.+ +..+.++
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~-a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEG-AFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-T-S--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCC-CCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 467999999999777655555667889999999999987776654321 101 0000 0111111000 0001111
Q ss_pred --ccc--cccccccccC-CCCCCceeEEEeccchh-------HHHHHHHHHHHhccCCeEEEEecc
Q 041459 131 --GIV--EDLSSHEIRG-ISETEKYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 131 --~~~--~~~~~~~~~~-~~~~~~~DvIi~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
..+ +=...+-+.. .....++|+|++.+.++ .+...+.++.++|||||.+++.+.
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 111 0000000111 11233599999977764 477889999999999999998544
No 236
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.93 E-value=0.00027 Score=61.02 Aligned_cols=48 Identities=31% Similarity=0.423 Sum_probs=41.4
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
++++..++|.-+|.|..+..+++. +..+++|+|.++.+++.|++++..
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 457789999999999999987764 458899999999999999988753
No 237
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.89 E-value=3.8e-05 Score=66.50 Aligned_cols=105 Identities=20% Similarity=0.283 Sum_probs=75.2
Q ss_pred hccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHH-------HHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459 55 LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIK-------SAHQNAALNNIGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 55 ~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~-------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
++++|+.|.|-..|||.+.+.+++.|+- ++|.||+-.++. ..+.|.++-+...-.+.+...|....+
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~FGa~-viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~----- 278 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHFGAY-VIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPP----- 278 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhhcce-eeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcc-----
Confidence 3778999999999999999999999765 999999988877 235555555544322333333332221
Q ss_pred cccccccccccccccCCCCCCceeEEEeccchhH------------------------------------HHHHHHHHHH
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNP------------------------------------LLQLADHIVS 171 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~------------------------------------~~~~l~~~~~ 171 (225)
++....||.|+|+||+.- +-+++.-.++
T Consensus 279 ----------------~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~ 342 (421)
T KOG2671|consen 279 ----------------LRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSR 342 (421)
T ss_pred ----------------hhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHh
Confidence 124668999999999632 1356778889
Q ss_pred hccCCeEEEE
Q 041459 172 YAKPGAVVGI 181 (225)
Q Consensus 172 ~LkpgG~l~~ 181 (225)
.|..||++++
T Consensus 343 ~L~~ggrlv~ 352 (421)
T KOG2671|consen 343 RLVDGGRLVF 352 (421)
T ss_pred hhhcCceEEE
Confidence 9999999887
No 238
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.76 E-value=0.00038 Score=64.17 Aligned_cols=123 Identities=24% Similarity=0.311 Sum_probs=84.4
Q ss_pred CCCchHHHHHHHHHhhcc--CCCcEEEEcccccHHHHHHHhc----C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcce
Q 041459 40 GEHATTKLCLLLLQSLIK--GGELFLDYGTGSGILGIAAIKF----G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMK 112 (225)
Q Consensus 40 ~~~~~~~~~~~~L~~~~~--~~~~vlDiGcGtG~~~~~l~~~----~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~ 112 (225)
|++-|.+.+.+++...+. +..+|+|..||+|.+.+.+.+. . ...++|.|+++.....|+.|+..+++.. .+.
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-~~~ 244 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-DAN 244 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-ccc
Confidence 677788888887776644 5679999999999887765542 1 2569999999999999999999999863 222
Q ss_pred EEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH----------------------------HHH
Q 041459 113 LHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP----------------------------LLQ 164 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~----------------------------~~~ 164 (225)
....+....+. -. .-....+||.|++|||+.. ...
T Consensus 245 i~~~dtl~~~~--~~---------------~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 307 (489)
T COG0286 245 IRHGDTLSNPK--HD---------------DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLA 307 (489)
T ss_pred ccccccccCCc--cc---------------ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHH
Confidence 22222111100 00 0003467999999999740 124
Q ss_pred HHHHHHHhccCCeEEE
Q 041459 165 LADHIVSYAKPGAVVG 180 (225)
Q Consensus 165 ~l~~~~~~LkpgG~l~ 180 (225)
.+.++...|+|||...
T Consensus 308 f~~h~~~~l~~~g~aa 323 (489)
T COG0286 308 FLQHILYKLKPGGRAA 323 (489)
T ss_pred HHHHHHHhcCCCceEE
Confidence 5889999999977433
No 239
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.72 E-value=0.0001 Score=56.04 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=41.3
Q ss_pred cEEEEcccccHHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHHHhcCCC
Q 041459 61 LFLDYGTGSGILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNAALNNIG 107 (225)
Q Consensus 61 ~vlDiGcGtG~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~~~~~~~ 107 (225)
+++|+|||.|.++..+++.+. .+++++|.++.+.+.+++++..+++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~ 48 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP 48 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC
Confidence 489999999999998887643 48999999999999999999888765
No 240
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.70 E-value=7.6e-05 Score=60.99 Aligned_cols=110 Identities=18% Similarity=0.184 Sum_probs=70.5
Q ss_pred EEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCC
Q 041459 29 IILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGP 108 (225)
Q Consensus 29 ~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~ 108 (225)
+-++-...|+....+....+........ ....|+|..||.|+.++..+..+.. |+++|++|.-|..|++|++.-|+..
T Consensus 66 i~md~e~wfsvTpe~ia~~iA~~v~~~~-~~~~iidaf~g~gGntiqfa~~~~~-VisIdiDPikIa~AkhNaeiYGI~~ 143 (263)
T KOG2730|consen 66 IYMDREGWFSVTPEKIAEHIANRVVACM-NAEVIVDAFCGVGGNTIQFALQGPY-VIAIDIDPVKIACARHNAEVYGVPD 143 (263)
T ss_pred eeecccceEEeccHHHHHHHHHHHHHhc-CcchhhhhhhcCCchHHHHHHhCCe-EEEEeccHHHHHHHhccceeecCCc
Confidence 4444455554433333333222222222 4568999999999888877766544 8999999999999999999999984
Q ss_pred CcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch
Q 041459 109 KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL 159 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~ 159 (225)
++.+.+++.- +....+ ++ ....+|+++..+|.
T Consensus 144 -rItFI~GD~l-------d~~~~l-q~----------~K~~~~~vf~sppw 175 (263)
T KOG2730|consen 144 -RITFICGDFL-------DLASKL-KA----------DKIKYDCVFLSPPW 175 (263)
T ss_pred -eeEEEechHH-------HHHHHH-hh----------hhheeeeeecCCCC
Confidence 7777665431 222222 11 23348899988774
No 241
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.69 E-value=0.0012 Score=48.56 Aligned_cols=99 Identities=27% Similarity=0.469 Sum_probs=61.9
Q ss_pred EEEEcccccHHHHHHHhcCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC--CCccccccccccccccc
Q 041459 62 FLDYGTGSGILGIAAIKFGA--AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT--FPASMNERVDGIVEDLS 137 (225)
Q Consensus 62 vlDiGcGtG~~~~~l~~~~~--~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 137 (225)
++|+|||+|... .+..... ..++++|+++.++..++......... .+.....+... .+.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------- 114 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG--LVDFVVADALGGVLPF-------------- 114 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC--ceEEEEeccccCCCCC--------------
Confidence 999999999876 4333322 36899999999999855444321111 02333333221 110
Q ss_pred cccccCCCCC-CceeEEEeccchhH--HHHHHHHHHHhccCCeEEEEeccC
Q 041459 138 SHEIRGISET-EKYDVVIANILLNP--LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 138 ~~~~~~~~~~-~~~DvIi~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
.. ..||++.+....+. ....+..+.+.++|+|.+++....
T Consensus 115 --------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 115 --------EDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred --------CCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 22 47999943333322 467889999999999999886554
No 242
>PRK10742 putative methyltransferase; Provisional
Probab=97.69 E-value=0.00011 Score=61.45 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=42.9
Q ss_pred ccCCC--cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459 56 IKGGE--LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN 104 (225)
Q Consensus 56 ~~~~~--~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~ 104 (225)
+++|. +|||+.+|+|..++.++..|+. |+++|.++.+....+.++...
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra 133 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARG 133 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHh
Confidence 35666 8999999999999999999887 999999999999999988763
No 243
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.69 E-value=0.0005 Score=58.57 Aligned_cols=100 Identities=25% Similarity=0.324 Sum_probs=62.5
Q ss_pred CcEEEEccccc-HHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHH-hcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 60 ELFLDYGTGSG-ILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAA-LNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 60 ~~vlDiGcGtG-~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.+|+=+|||+= ..++.+++. + ...++++|+++.+.+.+++-+. ..++. .++.+...+....+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~-~~m~f~~~d~~~~~~------------ 188 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS-KRMSFITADVLDVTY------------ 188 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH--SSEEEEES-GGGG-G------------
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc-CCeEEEecchhcccc------------
Confidence 59999999986 445566653 3 4568999999999999998777 44554 556666655433211
Q ss_pred cccccccCCCCCCceeEEEeccchh----HHHHHHHHHHHhccCCeEEEEe
Q 041459 136 LSSHEIRGISETEKYDVVIANILLN----PLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~----~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
....||+|+...... +-.+++.++.+.++||+.+++.
T Consensus 189 ----------dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 189 ----------DLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp ----------G----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ----------ccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 346799999877665 6778999999999999999884
No 244
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.68 E-value=0.0011 Score=54.28 Aligned_cols=104 Identities=16% Similarity=0.239 Sum_probs=73.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..+|.+||++|-|-|.+.-.+-+.+..+=+.+|-.|.+++.-+...-... +++.... +.. .+.+..+
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek---~nViil~--g~W-----eDvl~~L--- 165 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK---ENVIILE--GRW-----EDVLNTL--- 165 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc---cceEEEe--cch-----Hhhhccc---
Confidence 45799999999999999888888777667899999999977765532211 2232222 211 1222222
Q ss_pred cccccccCCCCCCceeEEEecc---chhHHHHHHHHHHHhccCCeEEEEe
Q 041459 136 LSSHEIRGISETEKYDVVIANI---LLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~---~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
+++.||-|+-+. .++....+.+.+.++|||+|++-+.
T Consensus 166 ----------~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 166 ----------PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred ----------cccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 667799998753 3455677889999999999998774
No 245
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.66 E-value=0.0012 Score=50.54 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=57.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh--
Q 041459 83 MSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-- 160 (225)
Q Consensus 83 ~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-- 160 (225)
+|+|.||.+++++.+++++...++. +++.+....-+.+ ..+ + +.+++|.++.|..+-
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-~~v~li~~sHe~l--------~~~-----------i-~~~~v~~~iFNLGYLPg 59 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE-DRVTLILDSHENL--------DEY-----------I-PEGPVDAAIFNLGYLPG 59 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G-SGEEEEES-GGGG--------GGT--------------S--EEEEEEEESB-CT
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC-CcEEEEECCHHHH--------Hhh-----------C-ccCCcCEEEEECCcCCC
Confidence 5899999999999999999988876 3566665443222 111 1 235899999987652
Q ss_pred ----------HHHHHHHHHHHhccCCeEEEEeccCCCcH
Q 041459 161 ----------PLLQLADHIVSYAKPGAVVGISGILSEQL 189 (225)
Q Consensus 161 ----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 189 (225)
.-...++.+.++|+|||.+.+.....+..
T Consensus 60 gDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~g 98 (140)
T PF06962_consen 60 GDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPG 98 (140)
T ss_dssp S-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCC
Confidence 13467899999999999999987765443
No 246
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.66 E-value=5.6e-05 Score=54.78 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=40.7
Q ss_pred EEEcccccHHHHHHHhc----CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459 63 LDYGTGSGILGIAAIKF----GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS 138 (225)
Q Consensus 63 lDiGcGtG~~~~~l~~~----~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (225)
||+|+..|..+..+++. +..+++++|..+. .+.+++.++..++. ..+.+...+.. +.+..+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~-~~~~~~~g~s~-------~~l~~~------ 65 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS-DRVEFIQGDSP-------DFLPSL------ 65 (106)
T ss_dssp --------------------------EEEESS-------------GGG--BTEEEEES-TH-------HHHHHH------
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC-CeEEEEEcCcH-------HHHHHc------
Confidence 68999999888776642 2247999999995 33344444434443 34555544331 111122
Q ss_pred ccccCCCCCCceeEEEeccc--hhHHHHHHHHHHHhccCCeEEEEec
Q 041459 139 HEIRGISETEKYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 139 ~~~~~~~~~~~~DvIi~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
...++|+++.+.. +......++.+.+.|+|||++++.+
T Consensus 66 -------~~~~~dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 66 -------PDGPIDLIFIDGDHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -------HH--EEEEEEES---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -------CCCCEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2468999999764 4556677889999999999999864
No 247
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.64 E-value=0.00023 Score=54.60 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=42.9
Q ss_pred cCCCcEEEEcccccHHHHHHHh-----cCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 57 KGGELFLDYGTGSGILGIAAIK-----FGAAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~-----~~~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
.+...|+|+|||.|+++..++. .+..+++++|.++..++.+++.....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 3578999999999999999888 566789999999999999988887665
No 248
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.64 E-value=0.0003 Score=61.19 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=68.4
Q ss_pred CcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccc
Q 041459 60 ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSH 139 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (225)
...+|+|.|.|.++-.+.. ...++-+++++...+..++.... .++. -.. ++-+.
T Consensus 179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~gV~-----~v~--gdmfq----------------- 232 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-PGVE-----HVA--GDMFQ----------------- 232 (342)
T ss_pred ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-CCcc-----eec--ccccc-----------------
Confidence 6889999999999988766 34558899999988888877664 4432 222 21110
Q ss_pred cccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459 140 EIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 140 ~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
...+-|+|++.+.+++ ...+++++++.|+|||.+++.+.
T Consensus 233 ------~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 233 ------DTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ------cCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 1233569999887765 56799999999999999998766
No 249
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.59 E-value=0.00043 Score=56.04 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=40.4
Q ss_pred CCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 59 GELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
...+.|||||-|.+.+.++- .+..-++|.||...+.+..+.++...+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR 108 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR 108 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence 35689999999999999885 577889999999999999988887555
No 250
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.58 E-value=0.00016 Score=59.56 Aligned_cols=88 Identities=23% Similarity=0.307 Sum_probs=57.7
Q ss_pred CCCcEEEEcccccHH-HHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGIL-GIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~-~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
++.++||+|.|.-.+ .+.-.+....+++|.|+++.+++.|+.++..|.--...+++....... ..+.+.+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~------~if~gii--- 148 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD------AIFNGII--- 148 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc------ccccccc---
Confidence 456889999887644 332223334569999999999999999999884222455555433211 1111111
Q ss_pred ccccccCCCCCCceeEEEeccchhHH
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPL 162 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~ 162 (225)
-..++||++.||||++..
T Consensus 149 --------g~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 149 --------GKNERYDATLCNPPFHDS 166 (292)
T ss_pred --------cccceeeeEecCCCcchh
Confidence 136789999999999764
No 251
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.57 E-value=0.00067 Score=59.30 Aligned_cols=87 Identities=16% Similarity=0.258 Sum_probs=56.8
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.+|++++|+||++|.++..+.+.|. +|+|||..+ + +. .+... .++.....++-.+.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l---~~-~L~~~----~~V~h~~~d~fr~~-------------- 265 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-M---AQ-SLMDT----GQVEHLRADGFKFR-------------- 265 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-c---CH-hhhCC----CCEEEEeccCcccC--------------
Confidence 4789999999999999999999987 799999655 2 11 11111 22333333321110
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG 176 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg 176 (225)
...+.+|+++|+..-.+ ..+++-+.++|..|
T Consensus 266 --------p~~~~vDwvVcDmve~P-~rva~lm~~Wl~~g 296 (357)
T PRK11760 266 --------PPRKNVDWLVCDMVEKP-ARVAELMAQWLVNG 296 (357)
T ss_pred --------CCCCCCCEEEEecccCH-HHHHHHHHHHHhcC
Confidence 02567999999876544 35556677777666
No 252
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.55 E-value=0.0023 Score=52.62 Aligned_cols=104 Identities=20% Similarity=0.185 Sum_probs=66.9
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|.+||-+|+++|+..-+++.. +...|+|||+++...+..-..+.... ++-....|+.... .-..
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~----NIiPIl~DAr~P~-----~Y~~-- 139 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP----NIIPILEDARHPE-----KYRM-- 139 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST----TEEEEES-TTSGG-----GGTT--
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC----ceeeeeccCCChH-----Hhhc--
Confidence 568899999999999999888873 36789999999977665543333221 2333444443321 0000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHH-HHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLL-QLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~-~~l~~~~~~LkpgG~l~~~ 182 (225)
.-+.+|+|+++....... -++.++...||+||.++++
T Consensus 140 ------------lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 140 ------------LVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp ------------TS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------ccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence 235899999987765544 4577788899999998874
No 253
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.45 E-value=0.00067 Score=58.55 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=82.7
Q ss_pred CcceeEEecccceecC--CCCchHHHHHHHHHhhccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHH
Q 041459 24 VQATNIILNPGLAFGT--GEHATTKLCLLLLQSLIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 24 ~~~~~~~~~~~~~f~~--~~~~~~~~~~~~L~~~~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~ 99 (225)
.+++++.++...+|.- -..|........-...++.|.+||=+|+|+ |..+...++ .|+++|+.+|+++.-++.|++
T Consensus 133 ~~dfc~KLPd~vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 133 PADFCYKLPDNVSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred chHheeeCCCCCchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 4456666666654422 222322222222223467899999999998 777776555 799999999999999999987
Q ss_pred HHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEE
Q 041459 100 NAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVV 179 (225)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l 179 (225)
+ |.+. +........+ +.+.+.++.. -....+|+.|.+.-.+ ..++.+...++.||++
T Consensus 213 -~---Ga~~----~~~~~~~~~~----~~~~~~v~~~--------~g~~~~d~~~dCsG~~---~~~~aai~a~r~gGt~ 269 (354)
T KOG0024|consen 213 -F---GATV----TDPSSHKSSP----QELAELVEKA--------LGKKQPDVTFDCSGAE---VTIRAAIKATRSGGTV 269 (354)
T ss_pred -h---CCeE----EeeccccccH----HHHHHHHHhh--------ccccCCCeEEEccCch---HHHHHHHHHhccCCEE
Confidence 3 3221 1111110000 2222222211 1334589888755443 3455667899999998
Q ss_pred EEeccCC
Q 041459 180 GISGILS 186 (225)
Q Consensus 180 ~~~~~~~ 186 (225)
++.+++.
T Consensus 270 vlvg~g~ 276 (354)
T KOG0024|consen 270 VLVGMGA 276 (354)
T ss_pred EEeccCC
Confidence 8876553
No 254
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.42 E-value=0.015 Score=48.45 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=58.4
Q ss_pred CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC-CCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT-FPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 135 (225)
.|++||=+|=+. ..+++++. ....+|+.+|+++..++..++.+...++. ++....+... +|. .
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~---i~~~~~DlR~~LP~-------~---- 108 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP---IEAVHYDLRDPLPE-------E---- 108 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS---T-------T----
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc---eEEEEecccccCCH-------H----
Confidence 588999887443 34444332 44678999999999999999999988876 5566555432 110 0
Q ss_pred cccccccCCCCCCceeEEEeccchh--HHHHHHHHHHHhccCCe-EEEE
Q 041459 136 LSSHEIRGISETEKYDVVIANILLN--PLLQLADHIVSYAKPGA-VVGI 181 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~~LkpgG-~l~~ 181 (225)
-.++||+++++||+. .+.-++......||..| ..++
T Consensus 109 ----------~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 109 ----------LRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp ----------TSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEE
T ss_pred ----------HhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEE
Confidence 247899999999975 46778888888998876 4444
No 255
>PRK11524 putative methyltransferase; Provisional
Probab=97.34 E-value=0.00085 Score=57.51 Aligned_cols=52 Identities=23% Similarity=0.285 Sum_probs=43.9
Q ss_pred HHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 50 ~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
.++...-.+|+.|||.+||+|+.++++.+.+ .+++|+|++++.++.|++++.
T Consensus 200 rlI~~~S~~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 200 RIILASSNPGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHhCCCCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHH
Confidence 3344445689999999999999999988886 449999999999999999875
No 256
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.002 Score=56.55 Aligned_cols=118 Identities=17% Similarity=0.157 Sum_probs=75.2
Q ss_pred HHhhccCCCcEEEEcccccHHHHHHHhc---C--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccc
Q 041459 52 LQSLIKGGELFLDYGTGSGILGIAAIKF---G--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMN 126 (225)
Q Consensus 52 L~~~~~~~~~vlDiGcGtG~~~~~l~~~---~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (225)
|.--++++.+|||+++.+|.-+..+.+. . ...+++-|+++.-+.+.++.+.+.+..+ ..+...+...++-...
T Consensus 149 L~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~--~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 149 LALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPN--LLVTNHDASLFPNIYL 226 (375)
T ss_pred hhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcc--eeeecccceecccccc
Confidence 3334679999999999999888776552 2 2379999999998888887775444332 2222222222211000
Q ss_pred ccccccccccccccccCCCCCCceeEEEeccchhH--------------------------HHHHHHHHHHhccCCeEEE
Q 041459 127 ERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------------------------LLQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------------------------~~~~l~~~~~~LkpgG~l~ 180 (225)
..... .....||-|+++.|... ...++.+..++||+||.++
T Consensus 227 ~~~~~-------------~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lV 293 (375)
T KOG2198|consen 227 KDGND-------------KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLV 293 (375)
T ss_pred ccCch-------------hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEE
Confidence 00000 03457999999766311 2357888999999999999
Q ss_pred Eecc
Q 041459 181 ISGI 184 (225)
Q Consensus 181 ~~~~ 184 (225)
.|+-
T Consensus 294 YSTC 297 (375)
T KOG2198|consen 294 YSTC 297 (375)
T ss_pred Eecc
Confidence 8744
No 257
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.33 E-value=0.00062 Score=55.40 Aligned_cols=52 Identities=29% Similarity=0.436 Sum_probs=38.9
Q ss_pred HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Q 041459 47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~ 99 (225)
++.+++...-.+|+.|||.+||+|+.+.++.+.+ .+++|+|+++...+.|++
T Consensus 180 l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 180 LIERLIKASTNPGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhhhccceeeehhhhccChHHHHHHHcC-CeEEEEeCCHHHHHHhcC
Confidence 3334444445689999999999999999888885 459999999999998864
No 258
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.31 E-value=0.0086 Score=51.39 Aligned_cols=59 Identities=25% Similarity=0.269 Sum_probs=45.7
Q ss_pred HHHHHHHhh-ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 47 LCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 47 ~~~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
++.+.+..+ ++++...+|.--|.|+.+..+++. + ..+++|+|.+|.+++.|++.+...+
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~ 72 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD 72 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC
Confidence 334444433 557789999999999999987664 3 4669999999999999999876433
No 259
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.00054 Score=53.56 Aligned_cols=119 Identities=15% Similarity=0.188 Sum_probs=75.3
Q ss_pred CCCcEEEEccc-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTG-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcG-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.|.+|+++|.| +|..++.+|. .+...|...|-++.+++..++....|... .-.++....-... ...
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s-~~tsc~vlrw~~~-----~aq------ 96 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMAS-SLTSCCVLRWLIW-----GAQ------ 96 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccc-ccceehhhHHHHh-----hhH------
Confidence 47899999999 4666777665 47788999999999999988876655322 1111211110000 000
Q ss_pred cccccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCeEEEEeccCC-CcHHHHHHH
Q 041459 136 LSSHEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGILS-EQLPHIINR 195 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~ 195 (225)
.......||+|++.-.+ ++...+++.+..+|+|.|.-+++...+ .....+.+.
T Consensus 97 -------sq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de 153 (201)
T KOG3201|consen 97 -------SQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDE 153 (201)
T ss_pred -------HHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHH
Confidence 01145689999995442 446678899999999999977755543 333334333
No 260
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.15 E-value=0.0049 Score=53.37 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=35.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 56 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
.+++..++|.--|.|+.+..+++ .+..+++|+|.++.+++.|++++.
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~ 65 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK 65 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh
Confidence 45788999999999999998775 466899999999999999987765
No 261
>PRK13699 putative methylase; Provisional
Probab=97.12 E-value=0.0024 Score=53.06 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=43.9
Q ss_pred HHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 50 ~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
.++.....+|+.|||.+||+|+.++.+.+.+. +++|+|+++...+.|.+++..
T Consensus 155 ~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 155 PLIESFTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 34444456899999999999999998888765 489999999999999888764
No 262
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.06 E-value=0.0012 Score=59.13 Aligned_cols=55 Identities=24% Similarity=0.389 Sum_probs=49.0
Q ss_pred cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe
Q 041459 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV 116 (225)
Q Consensus 61 ~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~ 116 (225)
-|||+|+|||.+++.+.+.|+..++|+|+-..|.+.|++....++.. +++.+...
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S-dkI~vInk 123 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS-DKINVINK 123 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc-cceeeecc
Confidence 68999999999999999999999999999999999999999999987 55655543
No 263
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.03 E-value=0.0094 Score=50.69 Aligned_cols=41 Identities=22% Similarity=0.168 Sum_probs=35.4
Q ss_pred CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHH
Q 041459 59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQN 100 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~ 100 (225)
..+||=-|||.|+++..+|..|.. +.|.|.|--|+-...-.
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fi 97 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFI 97 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHH
Confidence 569999999999999999999875 89999999998665543
No 264
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.01 E-value=0.0012 Score=56.40 Aligned_cols=137 Identities=20% Similarity=0.231 Sum_probs=89.1
Q ss_pred CCCCCCCcceeEEecccc-eecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHH-HHHhcCCCeEEEEeCCHHHHH
Q 041459 18 WSTPPDVQATNIILNPGL-AFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGI-AAIKFGAAMSVGVDIDPQAIK 95 (225)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~-~l~~~~~~~v~~vDi~~~~l~ 95 (225)
|....+. ++.+..+|.. .|+.|. .....+++ .....+..|+|+.+|-|++++ .+...|++.|+++|.+|.+++
T Consensus 158 WV~~v~N-GI~~~~d~t~~MFS~GN---~~EK~Rv~-~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svE 232 (351)
T KOG1227|consen 158 WVKHVQN-GITQIWDPTKTMFSRGN---IKEKKRVL-NTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVE 232 (351)
T ss_pred ceeehhc-CeEEEechhhhhhhcCc---HHHHHHhh-hcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHH
Confidence 8877666 6888888883 444443 12222333 223357999999999999999 678889999999999999999
Q ss_pred HHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccC
Q 041459 96 SAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKP 175 (225)
Q Consensus 96 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkp 175 (225)
..++++..|++. +......++.... .+....|-|..... ..-..-...+.++|||
T Consensus 233 aLrR~~~~N~V~-~r~~i~~gd~R~~-----------------------~~~~~AdrVnLGLl-PSse~~W~~A~k~Lk~ 287 (351)
T KOG1227|consen 233 ALRRNAEANNVM-DRCRITEGDNRNP-----------------------KPRLRADRVNLGLL-PSSEQGWPTAIKALKP 287 (351)
T ss_pred HHHHHHHhcchH-HHHHhhhcccccc-----------------------Cccccchheeeccc-cccccchHHHHHHhhh
Confidence 999999988765 2223333332221 14556777765332 2223345566778888
Q ss_pred CeE--EEEecc
Q 041459 176 GAV--VGISGI 184 (225)
Q Consensus 176 gG~--l~~~~~ 184 (225)
.|- +=+.++
T Consensus 288 eggsilHIHen 298 (351)
T KOG1227|consen 288 EGGSILHIHEN 298 (351)
T ss_pred cCCcEEEEecc
Confidence 544 434433
No 265
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.01 E-value=0.0021 Score=56.97 Aligned_cols=104 Identities=23% Similarity=0.201 Sum_probs=74.9
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.+++..++|+|||-|....+.+......++|+|.++.-+..+........+.+. ..+...+...-+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k-~~~~~~~~~~~~------------- 173 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNK-CNFVVADFGKMP------------- 173 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhh-cceehhhhhcCC-------------
Confidence 557778999999999999999998878899999999888888776665555532 112222211111
Q ss_pred cccccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCeEEEEe
Q 041459 136 LSSHEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.++..||.+-+.-.. .......+++++.+||||+++..
T Consensus 174 ---------fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 174 ---------FEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred ---------CCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 157788887764332 23567889999999999999874
No 266
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.00041 Score=62.80 Aligned_cols=107 Identities=17% Similarity=0.242 Sum_probs=78.9
Q ss_pred CCCcEEEEcccccHHHHHHHh-c-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIK-F-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~-~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++.+|||.-|+||.-++..++ . +..++++-|.++++++..+.|+..|+.. +.+.....+++.. +++.
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-~ive~~~~DA~~l----------M~~~ 177 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-DIVEPHHSDANVL----------MYEH 177 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-hhcccccchHHHH----------HHhc
Confidence 456899999999999886554 3 5778999999999999999999988765 3444444443221 1111
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
. .....||+|-.+| |.....+++.+.+.+..||++++++.
T Consensus 178 ~--------~~~~~FDvIDLDP-yGs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 178 P--------MVAKFFDVIDLDP-YGSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred c--------ccccccceEecCC-CCCccHHHHHHHHHhhcCCEEEEEec
Confidence 0 0247899998765 55567788999999999999999644
No 267
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.022 Score=46.26 Aligned_cols=104 Identities=24% Similarity=0.262 Sum_probs=71.2
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
+++|.+||=+|+.+|+..-+.+.. +...++++|+++.+....-..+.... ++--...|++.. +.-..
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~----Ni~PIL~DA~~P-----~~Y~~--- 141 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP----NIIPILEDARKP-----EKYRH--- 141 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC----CceeeecccCCc-----HHhhh---
Confidence 567899999999999998888863 56779999999998776654443221 122334444332 11111
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHH-HHHHHHHhccCCeEEEEe
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQ-LADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~-~l~~~~~~LkpgG~l~~~ 182 (225)
--+..|+|+.+.......+ ++.++...||+||.++++
T Consensus 142 -----------~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 142 -----------LVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred -----------hcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 1356899999877655554 567788999999977763
No 268
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.013 Score=45.36 Aligned_cols=117 Identities=19% Similarity=0.189 Sum_probs=72.3
Q ss_pred hHHHHHHHHHhhc-cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCC
Q 041459 44 TTKLCLLLLQSLI-KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122 (225)
Q Consensus 44 ~~~~~~~~L~~~~-~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (225)
++..+...|.-.. .+..+.+|+|+|.|.+-+.+++.+....+|+|++|-....++-..-++++. +..++...+.=.+
T Consensus 57 tteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~-k~trf~RkdlwK~- 134 (199)
T KOG4058|consen 57 TTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA-KSTRFRRKDLWKV- 134 (199)
T ss_pred cHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc-cchhhhhhhhhhc-
Confidence 4444444443332 234689999999999999999988777899999999999998887777765 3333332221111
Q ss_pred ccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
....|..+++-..-..+.++-..+..-+..+..++..-+.
T Consensus 135 -----------------------dl~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvacRFP 174 (199)
T KOG4058|consen 135 -----------------------DLRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVACRFP 174 (199)
T ss_pred -----------------------cccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEEecC
Confidence 2222333332222233455566677677777777654443
No 269
>PHA01634 hypothetical protein
Probab=96.84 E-value=0.003 Score=47.50 Aligned_cols=49 Identities=18% Similarity=0.104 Sum_probs=45.2
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI 106 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~ 106 (225)
.+++|+|+|++.|..+++.+..|++.|++++.++...+..+.+.+.+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 6899999999999999999999999999999999999999998887654
No 270
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.84 E-value=0.0058 Score=50.07 Aligned_cols=141 Identities=14% Similarity=0.123 Sum_probs=83.7
Q ss_pred chHHHHHHHHHhhcc------CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe
Q 041459 43 ATTKLCLLLLQSLIK------GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV 116 (225)
Q Consensus 43 ~~~~~~~~~L~~~~~------~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~ 116 (225)
.+.+.+.+||..... ...++|||||=+...... ..+.-.++.+|+++.. .++ ....+.
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~~----------~~I----~qqDFm 93 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQH----------PGI----LQQDFM 93 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCCC----------CCc----eeeccc
Confidence 477888899976522 125999999875543332 2344459999998711 111 112221
Q ss_pred cCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH------HHHHHHHHHHhccCCeE-----EEEe---
Q 041459 117 PDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP------LLQLADHIVSYAKPGAV-----VGIS--- 182 (225)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~------~~~~l~~~~~~LkpgG~-----l~~~--- 182 (225)
..... . .+.++||+|.++.+++. .-+.+..+.+.|+|+|. +++.
T Consensus 94 ~rplp---------------------~-~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 94 ERPLP---------------------K-NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred cCCCC---------------------C-CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 11000 0 04678999999766533 34679999999999999 7764
Q ss_pred -ccCCC---cHHHHHHHHHhh-hhhhcccccCCceEEEeeeecc
Q 041459 183 -GILSE---QLPHIINRYSEF-LEDILLSEMDDWTCVSGTKKRA 221 (225)
Q Consensus 183 -~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~k~~~ 221 (225)
|+... ....+...+... |..+.......-.+..++|...
T Consensus 152 ~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~~~~ 195 (219)
T PF11968_consen 152 PCVTNSRYMTEERLREIMESLGFTRVKYKKSKKLAYWLFRKSGK 195 (219)
T ss_pred hHhhcccccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEeecCC
Confidence 33221 233444555544 6666655556666666666544
No 271
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.78 E-value=0.0044 Score=51.17 Aligned_cols=120 Identities=14% Similarity=0.140 Sum_probs=76.2
Q ss_pred CCCcEEEEcccccHHHHHHHhc--C------C--CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF--G------A--AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~--~------~--~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
.-++++|+++.+|..+..+++. . . .+|++||+.+ ..+++. +.....+..... .+..
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-----------MaPI~G--V~qlq~DIT~~s-tae~ 106 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-----------MAPIEG--VIQLQGDITSAS-TAEA 106 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-----------CCccCc--eEEeecccCCHh-HHHH
Confidence 4479999999999999998863 1 1 2499999977 344442 222233322210 1111
Q ss_pred cccccccccccccccCCCCCCceeEEEeccch-----hHHH---------HHHHHHHHhccCCeEEEEeccCCCcHHHHH
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILL-----NPLL---------QLADHIVSYAKPGAVVGISGILSEQLPHII 193 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~-----~~~~---------~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 193 (225)
.+..+ ..++.|+|+|+... |.+. ..+.-....|||||.++..-+......-+-
T Consensus 107 Ii~hf-------------ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLy 173 (294)
T KOG1099|consen 107 IIEHF-------------GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLY 173 (294)
T ss_pred HHHHh-------------CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHH
Confidence 22222 56789999997542 3322 235556688999999998777777777777
Q ss_pred HHHHhhhhhhc
Q 041459 194 NRYSEFLEDIL 204 (225)
Q Consensus 194 ~~~~~~~~~~~ 204 (225)
..++.+|..+.
T Consensus 174 sql~~ff~kv~ 184 (294)
T KOG1099|consen 174 SQLRKFFKKVT 184 (294)
T ss_pred HHHHHHhhcee
Confidence 77777765444
No 272
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.70 E-value=0.003 Score=53.60 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=69.7
Q ss_pred HHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459 48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 48 ~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
+.+++.... .+..++|+|||.|-.... ++...++|.|++...+..|++.- + . .....++...+.
T Consensus 36 v~qfl~~~~-~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~~---~-~----~~~~ad~l~~p~---- 99 (293)
T KOG1331|consen 36 VRQFLDSQP-TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRSG---G-D----NVCRADALKLPF---- 99 (293)
T ss_pred HHHHHhccC-CcceeeecccCCcccCcC---CCcceeeecchhhhhccccccCC---C-c----eeehhhhhcCCC----
Confidence 344554443 388999999999965442 35556899999998887776431 1 0 233334433322
Q ss_pred cccccccccccccccCCCCCCceeEEEeccchhHH------HHHHHHHHHhccCCeEEEEecc
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~------~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
....||..++-...+++ ..+++++.+.++|||-..+...
T Consensus 100 ------------------~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 100 ------------------REESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred ------------------CCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 56789999887777774 3579999999999999666433
No 273
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.68 E-value=0.014 Score=48.91 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=38.4
Q ss_pred cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 041459 57 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIG 107 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~ 107 (225)
....+|+|+|||.-=+++.... .+...|+|.||+..+++...+.+...+..
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~ 155 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP 155 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 3578999999999988886444 45568999999999999999888877755
No 274
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.67 E-value=0.0042 Score=54.79 Aligned_cols=105 Identities=23% Similarity=0.363 Sum_probs=68.8
Q ss_pred CCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++.+|+=+|||+ |.+++.+++ .|+.+++++|.++.-++.|++........+ ..... .....
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~--------~~~~~---~~~~~------ 230 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVN--------PSEDD---AGAEI------ 230 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeec--------Ccccc---HHHHH------
Confidence 445899999998 888777665 689999999999999999987432111111 00000 00000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 188 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 188 (225)
........+|+++-... ....+..+.+++++||.+.+.++....
T Consensus 231 ------~~~t~g~g~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 231 ------LELTGGRGADVVIEAVG---SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ------HHHhCCCCCCEEEECCC---CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 01112346999987554 334678888999999999987766444
No 275
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.64 E-value=0.0072 Score=51.58 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=37.5
Q ss_pred cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 61 ~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
+++|++||.|.++..+.+.|...+.++|+++.+++..++|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 689999999999888888888889999999999998888764
No 276
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.55 E-value=0.00035 Score=56.72 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=60.9
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
.+.++||+|+|.|.++..++-. ..+|++.|.|..|....++. +.+ + +.. .+..
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~yn---V-l~~--~ew~---------------- 164 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NYN---V-LTE--IEWL---------------- 164 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CCc---e-eee--hhhh----------------
Confidence 3579999999999999876643 35589999999998877653 211 0 100 0110
Q ss_pred cccccCCCCCCceeEEEeccchh---HHHHHHHHHHHhccC-CeEEEE
Q 041459 138 SHEIRGISETEKYDVVIANILLN---PLLQLADHIVSYAKP-GAVVGI 181 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~---~~~~~l~~~~~~Lkp-gG~l~~ 181 (225)
..+-+||+|.|-..++ ..-.+++.+..+|+| +|.+++
T Consensus 165 -------~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 165 -------QTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred -------hcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 0345799998833332 245678999999999 788776
No 277
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.50 E-value=0.0027 Score=56.71 Aligned_cols=98 Identities=22% Similarity=0.300 Sum_probs=72.2
Q ss_pred CCCCCCCcceeEEecccceecCCCCchHHHH--HHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHH
Q 041459 18 WSTPPDVQATNIILNPGLAFGTGEHATTKLC--LLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIK 95 (225)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~ 95 (225)
.++.+++++..++.|-+ .++|- +++. .+.+....++|..|.|++||-|-+++.++..+ .++++-|.++++++
T Consensus 212 ~vtevre~~~~Fk~Dfs----kVYWn-sRL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik 285 (495)
T KOG2078|consen 212 LVTEVREGGERFKFDFS----KVYWN-SRLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIK 285 (495)
T ss_pred eEEEEecCCeeEEEecc----eEEee-ccchhHHHHHhhccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHH
Confidence 34456666666665554 33333 2222 23344556789999999999999999998887 67999999999999
Q ss_pred HHHHHHHhcCCCCCcceEEEecCCCC
Q 041459 96 SAHQNAALNNIGPKKMKLHLVPDRTF 121 (225)
Q Consensus 96 ~a~~~~~~~~~~~~~~~~~~~~~~~~ 121 (225)
+.+.|++.|.+....++....++..+
T Consensus 286 ~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 286 WLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred HHHHhccccccchhheeeecccHHHH
Confidence 99999999988866677777666443
No 278
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=96.49 E-value=0.072 Score=44.80 Aligned_cols=141 Identities=11% Similarity=0.017 Sum_probs=70.9
Q ss_pred CCcEEEEcccccHHHHHHHh----c--CCCeEEEEeCCH--------------------------HHHHHHHHHHHhcCC
Q 041459 59 GELFLDYGTGSGILGIAAIK----F--GAAMSVGVDIDP--------------------------QAIKSAHQNAALNNI 106 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~----~--~~~~v~~vDi~~--------------------------~~l~~a~~~~~~~~~ 106 (225)
...|+|+||-.|..++.++. . ...++++.|.-+ ..++..++|+...++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 35799999999977665432 2 245688888411 234445555554444
Q ss_pred CCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccc-hhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 107 GPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANIL-LNPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
..+++.+..+... .+ +... +..++-++..+.- +.+....++.++..|.|||++++-+..
T Consensus 155 ~~~~v~~vkG~F~---------------dT----Lp~~-p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 155 LDDNVRFVKGWFP---------------DT----LPDA-PIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp SSTTEEEEES-HH---------------HH----CCC--TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred CcccEEEECCcch---------------hh----hccC-CCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 3344444332210 00 0000 3456666666543 456678899999999999999998776
Q ss_pred CCcHHHHHHHHHhhhhhhcccccCCceEEEeeee
Q 041459 186 SEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219 (225)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~k~ 219 (225)
......-.+.+............-+|.++.++|.
T Consensus 215 ~~gcr~AvdeF~~~~gi~~~l~~id~~~v~w~k~ 248 (248)
T PF05711_consen 215 HPGCRKAVDEFRAEHGITDPLHPIDWTGVYWRKE 248 (248)
T ss_dssp THHHHHHHHHHHHHTT--S--EE-SSS-EEEE--
T ss_pred ChHHHHHHHHHHHHcCCCCccEEecCceEEEecC
Confidence 6333333333332222333344567888888873
No 279
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.48 E-value=0.031 Score=47.87 Aligned_cols=106 Identities=22% Similarity=0.220 Sum_probs=77.1
Q ss_pred CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHH--hcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAA--LNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
..++++=+|.|.|.......+ ....+++-+|++...++..++..+ ..+.+..++.+..+|+-.+ ....
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~f-------l~~~-- 191 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLF-------LEDL-- 191 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHH-------HHHh--
Confidence 367899999999988776443 446779999999999999988776 4456666777777765322 0111
Q ss_pred ccccccccCCCCCCceeEEEeccc--hh-----HHHHHHHHHHHhccCCeEEEEec
Q 041459 135 DLSSHEIRGISETEKYDVVIANIL--LN-----PLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~--~~-----~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
..+.||+|+.... .. ....+...+.+.||+||+++...
T Consensus 192 -----------~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 192 -----------KENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred -----------ccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 4678999998432 21 14567888999999999998853
No 280
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.46 E-value=0.007 Score=49.52 Aligned_cols=46 Identities=28% Similarity=0.278 Sum_probs=34.5
Q ss_pred CCCcEEEEcccccHHHHHH--Hh-cCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 58 GGELFLDYGTGSGILGIAA--IK-FGAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l--~~-~~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
.+.+++|-+||+|++.-.+ +. ....+++|.|+++.+++.|++|+..
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 3469999999999875543 32 3457799999999999999999863
No 281
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.45 E-value=0.018 Score=50.48 Aligned_cols=96 Identities=17% Similarity=0.241 Sum_probs=65.4
Q ss_pred ccCCCcEEEEccc-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTG-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcG-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++|+=+|+| .|.+++.+++ .+ .+|+++|.+++-++.|++.-....+ ...+.+.. ..
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i-------~~~~~~~~--------~~-- 225 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVI-------NSSDSDAL--------EA-- 225 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEE-------EcCCchhh--------HH--
Confidence 5689999999998 2477777777 56 8899999999999999865332221 11111111 00
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
-.+.+|+|+...+ ...++...+.|++||++++.+..
T Consensus 226 ------------~~~~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 226 ------------VKEIADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ------------hHhhCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence 1223999988655 34466777899999999987666
No 282
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.43 E-value=0.032 Score=50.76 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=72.0
Q ss_pred ccCCC-cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGE-LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~-~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
..+-. +++-+|||.-.++..+-+.|...|+.+|+|+..++....... .......+...+.....+
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~---~~~~~~~~~~~d~~~l~f----------- 110 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA---KERPEMQMVEMDMDQLVF----------- 110 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc---cCCcceEEEEecchhccC-----------
Confidence 33445 899999999999999888899999999999999988765432 122233444444433322
Q ss_pred ccccccccCCCCCCceeEEEeccchhH-------------HHHHHHHHHHhccCCeEEEE
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNP-------------LLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------~~~~l~~~~~~LkpgG~l~~ 181 (225)
++++||+|+--..++. ....+.++.+.|++||+++.
T Consensus 111 -----------edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 111 -----------EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred -----------CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 6778888887544332 23568899999999999664
No 283
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.36 E-value=0.043 Score=44.77 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=53.9
Q ss_pred CCCcEEEEcccccHHHHHHHh----c-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIK----F-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~----~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
+++.|+|+|.-.|.-+++.|. . +..+|+|+|++...... +....+++. .++++..++.... +.+...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~-~rI~~i~Gds~d~-----~~~~~v 103 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMS-PRITFIQGDSIDP-----EIVDQV 103 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SSST-----HHHHTS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcccc-CceEEEECCCCCH-----HHHHHH
Confidence 589999999999988776553 2 56789999996544322 223334443 5677776665443 111111
Q ss_pred ccccccccccCCCCCCceeEEEeccc--hhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+.........+|+-+.. ..+....++....++++|+++++.+.
T Consensus 104 ---------~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 104 ---------RELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp ---------GSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred ---------HHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 11112334456665432 34456667778899999999988543
No 284
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.34 E-value=0.092 Score=44.54 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=60.9
Q ss_pred CcEEEEcccccH--HHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc--cccccc
Q 041459 60 ELFLDYGTGSGI--LGIAAIK--FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE--RVDGIV 133 (225)
Q Consensus 60 ~~vlDiGcGtG~--~~~~l~~--~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 133 (225)
..+||+|||-=+ ..-..++ .+..+|+-+|.+|.++..++..+..+.- ....+...|..... .+.+ .....|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~--g~t~~v~aD~r~p~-~iL~~p~~~~~l 146 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR--GRTAYVQADLRDPE-AILAHPEVRGLL 146 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT--SEEEEEE--TT-HH-HHHCSHHHHCC-
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC--ccEEEEeCCCCCHH-HHhcCHHHHhcC
Confidence 589999999432 1222333 5789999999999999988887664431 22445555543321 1111 111121
Q ss_pred cccccccccCCCCCCceeEEEeccchh------HHHHHHHHHHHhccCCeEEEEeccCCCcHHH
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLN------PLLQLADHIVSYAKPGAVVGISGILSEQLPH 191 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 191 (225)
+ .+..+-++++ ..++ ....++..+...|.||.++.++....+..+.
T Consensus 147 D-----------~~rPVavll~-~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~ 198 (267)
T PF04672_consen 147 D-----------FDRPVAVLLV-AVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPE 198 (267)
T ss_dssp ------------TTS--EEEEC-T-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHH
T ss_pred C-----------CCCCeeeeee-eeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHH
Confidence 1 2344555544 3332 3678899999999999999998666554433
No 285
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.28 E-value=0.051 Score=47.00 Aligned_cols=134 Identities=18% Similarity=0.168 Sum_probs=71.6
Q ss_pred chHHHHHHHHHhhccC------CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEE-E
Q 041459 43 ATTKLCLLLLQSLIKG------GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLH-L 115 (225)
Q Consensus 43 ~~~~~~~~~L~~~~~~------~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~-~ 115 (225)
++.+-+++.|..+..+ ..+||--|||.|.++..++..|.. +-|-|+|--|+-...-.+-.-...+ ++.+. +
T Consensus 129 ~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~n-q~~IYPf 206 (369)
T KOG2798|consen 129 QLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQEN-QFTIYPF 206 (369)
T ss_pred hhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCC-cEEEEee
Confidence 3444555555554332 568999999999999999998765 5677877767654433321111111 11111 1
Q ss_pred e--cCCCCCcccccccccccccccccc-----------------ccCC---CCCCceeEEEeccch---hHHHHHHHHHH
Q 041459 116 V--PDRTFPASMNERVDGIVEDLSSHE-----------------IRGI---SETEKYDVVIANILL---NPLLQLADHIV 170 (225)
Q Consensus 116 ~--~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~---~~~~~~DvIi~~~~~---~~~~~~l~~~~ 170 (225)
. -.+.+.. +++-..|..++.+- ++.. ...+.||+|+.++-. +...++++.+.
T Consensus 207 Ih~~sn~~~~---dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~ 283 (369)
T KOG2798|consen 207 IHQYSNSLSR---DDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIY 283 (369)
T ss_pred eecccccccc---ccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHH
Confidence 0 0111000 00001110000000 0000 123469999887654 44678899999
Q ss_pred HhccCCeEEEE
Q 041459 171 SYAKPGAVVGI 181 (225)
Q Consensus 171 ~~LkpgG~l~~ 181 (225)
+.|||||+-+=
T Consensus 284 ~iLk~GGvWiN 294 (369)
T KOG2798|consen 284 KILKPGGVWIN 294 (369)
T ss_pred HhccCCcEEEe
Confidence 99999998763
No 286
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.93 E-value=0.082 Score=45.51 Aligned_cols=87 Identities=18% Similarity=0.164 Sum_probs=55.5
Q ss_pred CCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++++++=+|||. |.+++.+++ .|...+.++|.++..++.|... .-++. ...
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i~~----------~~~-------------- 196 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVLDP----------EKD-------------- 196 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---cccCh----------hhc--------------
Confidence 577888888875 666666665 5777788889988776655431 00100 000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
....+|+|+-...-. ..++.+.++++++|.+++.+.
T Consensus 197 ----------~~~g~Dvvid~~G~~---~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 197 ----------PRRDYRAIYDASGDP---SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ----------cCCCCCEEEECCCCH---HHHHHHHHhhhcCcEEEEEee
Confidence 123589888654322 345677789999999997554
No 287
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.77 E-value=0.081 Score=45.42 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=37.4
Q ss_pred cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 61 ~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
+++|++||.|.++.-+.+.|...+.++|+++.+.+.-+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc
Confidence 689999999999999999888889999999999988888865
No 288
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.71 E-value=0.024 Score=47.26 Aligned_cols=104 Identities=17% Similarity=0.124 Sum_probs=64.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|.+||=+|+++|+.--+.+.. +...|+++|.++.+=...-. +.... . ++--...|+.... .- .+
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~n-mAkkR-t--NiiPIiEDArhP~-----KY-Rm- 222 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLIN-MAKKR-T--NIIPIIEDARHPA-----KY-RM- 222 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHH-Hhhcc-C--CceeeeccCCCch-----he-ee-
Confidence 678999999999999887777653 55779999998854332221 11111 0 1112222222110 00 00
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHH-HHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLL-QLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~-~~l~~~~~~LkpgG~l~~~ 182 (225)
.-...|+||++.+..... .+.-++...||+||.++++
T Consensus 223 ------------lVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 223 ------------LVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred ------------eeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 234689999987765544 4566788899999999885
No 289
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.39 E-value=0.19 Score=44.35 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=66.3
Q ss_pred CCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++|||+|.|+|+-...+-.. + ...++.++.|+.. ...-..+..+-.. ........+ .....+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~l-rkV~~tl~~nv~t-~~td~r~s~----------vt~dRl-- 178 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPAL-RKVGDTLAENVST-EKTDWRASD----------VTEDRL-- 178 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHH-HHHHHHHHhhccc-ccCCCCCCc----------cchhcc--
Confidence 4678999999999776654442 2 2456778888743 3333333322211 111011100 000000
Q ss_pred cccccccCCCCCCceeEEEe-ccchh-----HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 136 LSSHEIRGISETEKYDVVIA-NILLN-----PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~-~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
.+-....|++++. +-.++ ++...++.+..++.|||.+++.+-++....++....++.
T Consensus 179 -------~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~ 241 (484)
T COG5459 179 -------SLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQI 241 (484)
T ss_pred -------CCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHH
Confidence 0113445776665 22221 244579999999999999999888776666655554443
No 290
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.34 E-value=0.15 Score=44.52 Aligned_cols=98 Identities=23% Similarity=0.283 Sum_probs=59.3
Q ss_pred cCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 57 KGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 57 ~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.++++|+=.|||. |.+++.+++ .|..+++++|.++..++.+++ .+.. .........+ ...+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~~--------~~~~- 230 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD----KLVNPQNDDL--------DHYK- 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc----EEecCCcccH--------HHHh-
Confidence 3688898888864 566666665 467689999999988887764 2321 0111000000 0000
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
...+.+|+++....- ...+..+.++|++||.++..+.
T Consensus 231 ----------~~~g~~D~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 231 ----------AEKGYFDVSFEVSGH---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ----------ccCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence 012358999865432 2345677789999999988654
No 291
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.14 E-value=0.17 Score=42.51 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=62.8
Q ss_pred CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC----cceEEEecCCCCCcccccccccccc
Q 041459 59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK----KMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
..+||++|+|+|..++.++..+..+|...|.-. .+...+.+...+..... .+.+...+=... ......
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~-----~~~~~~-- 158 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNA-----LDVSFR-- 158 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCc-----ccHhhc--
Confidence 457999999999888888887777788888654 44444444332222211 122221111100 000000
Q ss_pred ccccccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCeEEEEeccCCC
Q 041459 135 DLSSHEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGILSE 187 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 187 (225)
....+|+|+..-+. +.+..+...+..+|..++++++....++
T Consensus 159 -----------~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 159 -----------LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred -----------cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 12228999885443 3356778888888888887766544443
No 292
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.14 E-value=0.028 Score=51.37 Aligned_cols=95 Identities=16% Similarity=0.093 Sum_probs=58.3
Q ss_pred cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccccc
Q 041459 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHE 140 (225)
Q Consensus 61 ~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (225)
.|+|+.+|.|+++..|...+ ++..-+.|..-......+...|+-. ...-=++.|+.
T Consensus 368 NVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydRGLIG----~yhDWCE~fsT----------------- 423 (506)
T PF03141_consen 368 NVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDRGLIG----VYHDWCEAFST----------------- 423 (506)
T ss_pred eeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhcccch----hccchhhccCC-----------------
Confidence 79999999999999988765 3333333321111111222333321 11111222210
Q ss_pred ccCCCCCCceeEEEeccchhH------HHHHHHHHHHhccCCeEEEEecc
Q 041459 141 IRGISETEKYDVVIANILLNP------LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 141 ~~~~~~~~~~DvIi~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
=+.+||+|.++..+.. +..++-++-|.|+|+|.+++.+.
T Consensus 424 -----YPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 424 -----YPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred -----CCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 3678999999877654 45788999999999999999643
No 293
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.88 E-value=0.12 Score=45.07 Aligned_cols=94 Identities=15% Similarity=0.239 Sum_probs=58.9
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK--FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~--~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
.++|++|+=+|||. |.+++.+++ .+..+++++|.++.-++.++. .+.. .. . +.+.
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~-----~~-~--~~~~---------- 218 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADET-----YL-I--DDIP---------- 218 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCce-----ee-h--hhhh----------
Confidence 45689999999875 555555454 356789999999988777753 1111 00 0 0010
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
....+|+|+-...-......+....++|+++|.+++.+.
T Consensus 219 -------------~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 219 -------------EDLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred -------------hccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEee
Confidence 122489888644321123457778889999999987554
No 294
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.74 E-value=0.084 Score=43.96 Aligned_cols=80 Identities=16% Similarity=0.251 Sum_probs=43.5
Q ss_pred cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCC-------CcceEEEecCCCCCccccccccccc
Q 041459 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGP-------KKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 61 ~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+|||.-+|-|.=++.++..|. +|+++|.+|-+....+..+....-.. .++++...+...+
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~------------ 144 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY------------ 144 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH------------
T ss_pred EEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH------------
Confidence 899999999999998888776 59999999987666655543221111 2445555444322
Q ss_pred cccccccccCCCCCCceeEEEeccchhHH
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPL 162 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~ 162 (225)
+. .+..+||+|..+|++...
T Consensus 145 -------L~--~~~~s~DVVY~DPMFp~~ 164 (234)
T PF04445_consen 145 -------LR--QPDNSFDVVYFDPMFPER 164 (234)
T ss_dssp -------CC--CHSS--SEEEE--S----
T ss_pred -------Hh--hcCCCCCEEEECCCCCCc
Confidence 01 156789999999998753
No 295
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=94.65 E-value=0.21 Score=46.30 Aligned_cols=69 Identities=26% Similarity=0.228 Sum_probs=49.9
Q ss_pred CCCCchHHHHHHHHHhhcc----CCCcEEEEcccccHHHHHHHh---cC--CCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 041459 39 TGEHATTKLCLLLLQSLIK----GGELFLDYGTGSGILGIAAIK---FG--AAMSVGVDIDPQAIKSAHQNAALNNIG 107 (225)
Q Consensus 39 ~~~~~~~~~~~~~L~~~~~----~~~~vlDiGcGtG~~~~~l~~---~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~ 107 (225)
.|...+.+.+...+...+. ++..+.|..||+|.+.....+ .+ ...++|.+..+.+...|+.|+..++..
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~ 271 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID 271 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC
Confidence 3555666666666555422 346899999999988775432 12 256899999999999999998777654
No 296
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.59 E-value=0.075 Score=47.26 Aligned_cols=45 Identities=24% Similarity=0.519 Sum_probs=35.7
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHH
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQN 100 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~ 100 (225)
+.++.+|+..|||+ |.+++.+++ .+..+++++|.++..++.++..
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 45688999999887 777777766 4655799999999988888754
No 297
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.40 E-value=0.047 Score=39.82 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=38.7
Q ss_pred eeCCCCCCCCcceeEEecccceecCCCCchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCC
Q 041459 15 VPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDID 90 (225)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~ 90 (225)
...|.+-++..++.++ |-+ .+.-++.+.... ..+....+|+|||+|.+.-.|.+.|.. =.|+|..
T Consensus 23 v~~W~E~TdP~K~VfE-Dla---------IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~R 89 (112)
T PF07757_consen 23 VDNWPESTDPQKHVFE-DLA---------IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYP-GWGIDAR 89 (112)
T ss_pred HHhCcccCCchhhHHH-HHH---------HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCC-ccccccc
Confidence 3567776666666555 222 112222222222 123568999999999998888877654 2577753
No 298
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=94.15 E-value=1.4 Score=34.68 Aligned_cols=109 Identities=15% Similarity=0.027 Sum_probs=64.6
Q ss_pred hHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCc
Q 041459 44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPA 123 (225)
Q Consensus 44 ~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (225)
+...+...+.....++.+|+=+||=+-...+.-...+..+++..|++...- ..+ .. .+.+.|.+...
T Consensus 11 T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~--------~~~---~~-~F~fyD~~~p~- 77 (162)
T PF10237_consen 11 TAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFE--------QFG---GD-EFVFYDYNEPE- 77 (162)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHH--------hcC---Cc-ceEECCCCChh-
Confidence 444444444444445678999988775555543224566799999988442 211 11 23444443320
Q ss_pred cccccccccccccccccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCeEEEEe
Q 041459 124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.+.. . -.++||+|+++||+ +........+..++|+++.++++
T Consensus 78 ----~~~~-----------~--l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 78 ----ELPE-----------E--LKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred ----hhhh-----------h--cCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEe
Confidence 0000 0 24689999999998 23455667777778888888774
No 299
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.14 E-value=0.28 Score=42.66 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=35.9
Q ss_pred EEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 62 FLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 62 vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
|+|++||.|.++.-+.+.|..-+.++|+++.+.+.-+.|..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence 58999999999998888887778899999999988887754
No 300
>PRK11524 putative methyltransferase; Provisional
Probab=94.13 E-value=0.073 Score=45.58 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=30.7
Q ss_pred CCCceeEEEeccchhH-------------------HHHHHHHHHHhccCCeEEEEe
Q 041459 146 ETEKYDVVIANILLNP-------------------LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 146 ~~~~~DvIi~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~ 182 (225)
+++++|+|+++||+.. +...+..+.++|||||.+++.
T Consensus 24 ~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 24 PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 5678999999999731 245789999999999999985
No 301
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.07 E-value=0.27 Score=43.05 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=38.4
Q ss_pred CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
..+++|++||.|.+..-+...|..-+.++|+++.+++.-+.|..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence 45799999999999988888888889999999999888877755
No 302
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.88 E-value=0.37 Score=44.78 Aligned_cols=110 Identities=17% Similarity=0.278 Sum_probs=63.8
Q ss_pred CCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCC--------CCCccccc
Q 041459 58 GGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR--------TFPASMNE 127 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 127 (225)
++.+|+=+|||. |..++..++ .|+ .|+++|.++..++.+++. |.. .+.+...+.+ ..+.+..+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----GA~--~v~i~~~e~~~~~~gya~~~s~~~~~ 236 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----GAE--FLELDFEEEGGSGDGYAKVMSEEFIK 236 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCe--EEEeccccccccccchhhhcchhHHH
Confidence 688999999998 777777665 576 699999999999888752 311 0111111100 00000000
Q ss_pred cccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.....+. +....+|++|....... ...+.+++.+.+||||+++....
T Consensus 237 ~~~~~~~----------~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 237 AEMALFA----------EQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHH----------hccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0000000 01246999998654322 22335889999999999887543
No 303
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.72 E-value=0.065 Score=39.22 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=26.3
Q ss_pred ceeEEEeccch---------hHHHHHHHHHHHhccCCeEEEEe
Q 041459 149 KYDVVIANILL---------NPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 149 ~~DvIi~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
+||+|+|-..- +.+..++..+++.|+|||.+++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999984432 33677899999999999999983
No 304
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.71 E-value=0.22 Score=46.07 Aligned_cols=115 Identities=18% Similarity=0.207 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhhccC-----CCcEEEEcccccHHHHH---HHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceE
Q 041459 44 TTKLCLLLLQSLIKG-----GELFLDYGTGSGILGIA---AIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKL 113 (225)
Q Consensus 44 ~~~~~~~~L~~~~~~-----~~~vlDiGcGtG~~~~~---l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~ 113 (225)
++..+...|.+.+.+ -.+|+=+|+|-|-+... +++. ..-+++++|.+|+++...+. ....... +++++
T Consensus 348 Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~-~~Vti 425 (649)
T KOG0822|consen 348 YQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWD-NRVTI 425 (649)
T ss_pred HHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhc-CeeEE
Confidence 455666666555332 23678899999966554 3332 23458999999999988765 3444444 56777
Q ss_pred EEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch--h--H-HHHHHHHHHHhccCCeEEEEe
Q 041459 114 HLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL--N--P-LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~--~--~-~~~~l~~~~~~LkpgG~l~~~ 182 (225)
...|...+.. +..+.|++++...- . . -.+.+..+-+.|||+|+.+-+
T Consensus 426 i~~DMR~w~a----------------------p~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 426 ISSDMRKWNA----------------------PREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred EeccccccCC----------------------chhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 7766665531 34788999874321 1 1 246788888999999887653
No 305
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.70 E-value=0.35 Score=39.27 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=24.2
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEE
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGV 87 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~v 87 (225)
+++|.+|+|+-.|.|.++..++.. +...|++.
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~ 79 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAY 79 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEe
Confidence 568999999999999999887753 23345444
No 306
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=93.23 E-value=0.24 Score=43.10 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=51.0
Q ss_pred EEEcccccHHHHHH-HhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC-CCCCcccccccccccccccccc
Q 041459 63 LDYGTGSGILGIAA-IKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFPASMNERVDGIVEDLSSHE 140 (225)
Q Consensus 63 lDiGcGtG~~~~~l-~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 140 (225)
+|||+|+-.+--.+ +........+.|++.-....|+.|+..+++. +.+.+..... ..+ +
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls-s~ikvV~~~~~ktl------------------l 167 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS-SLIKVVKVEPQKTL------------------L 167 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccc-cceeeEEecchhhc------------------c
Confidence 68877765443222 2333466899999999999999999999887 4455444322 111 1
Q ss_pred ccCCC--CCCceeEEEeccchh
Q 041459 141 IRGIS--ETEKYDVVIANILLN 160 (225)
Q Consensus 141 ~~~~~--~~~~~DvIi~~~~~~ 160 (225)
++... ++..||...||||+.
T Consensus 168 ~d~~~~~~e~~ydFcMcNPPFf 189 (419)
T KOG2912|consen 168 MDALKEESEIIYDFCMCNPPFF 189 (419)
T ss_pred hhhhccCccceeeEEecCCchh
Confidence 11111 345699999999973
No 307
>PRK13699 putative methylase; Provisional
Probab=93.06 E-value=0.13 Score=42.64 Aligned_cols=52 Identities=8% Similarity=0.039 Sum_probs=36.1
Q ss_pred CCCceeEEEeccchh------------------HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 146 ETEKYDVVIANILLN------------------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 146 ~~~~~DvIi~~~~~~------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
+++++|+|+.+||+. .+...+.+++++|||||.+++.+.. .....+...+.+
T Consensus 17 pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~-~~~~~~~~al~~ 86 (227)
T PRK13699 17 PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW-NRVDRFMAAWKN 86 (227)
T ss_pred CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc-ccHHHHHHHHHH
Confidence 678899999999984 2346788999999999998763222 223444444443
No 308
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.02 E-value=0.25 Score=43.26 Aligned_cols=103 Identities=20% Similarity=0.184 Sum_probs=59.9
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++++||=.|+|. |.+++.+++ .|..+++++|.++.-++.+++ .+.+ .+.......+ .+.+..
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~----~~~i~~-- 239 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT----HTVNSSGTDP----VEAIRA-- 239 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc----eEEcCCCcCH----HHHHHH--
Confidence 45788999888764 555566665 466679999999988877753 2321 0111111110 000000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
......+|+++-...- ...+....+++++||.+++.+..
T Consensus 240 ----------~~~~~g~d~vid~~g~---~~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 240 ----------LTGGFGADVVIDAVGR---PETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred ----------HhCCCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEECCC
Confidence 1123458998864322 23456677899999999876543
No 309
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=93.00 E-value=0.073 Score=45.34 Aligned_cols=54 Identities=22% Similarity=0.285 Sum_probs=40.9
Q ss_pred CchHHHHHHHHH-----hhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHH
Q 041459 42 HATTKLCLLLLQ-----SLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIK 95 (225)
Q Consensus 42 ~~~~~~~~~~L~-----~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~ 95 (225)
++.+-.+...+. .....+++|||+|||+|.-++.+...+...+...|++...++
T Consensus 95 wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 95 WECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred eecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 444444444444 223478999999999999999988888788999999988773
No 310
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=92.77 E-value=0.3 Score=45.90 Aligned_cols=122 Identities=19% Similarity=0.179 Sum_probs=70.7
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++..|||+||.+|.....+++. |. .-|+|+|+.|- ..+.+. .-...+...- ..+..+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----------kp~~~c--~t~v~dIttd--~cr~~l---- 102 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----------KPIPNC--DTLVEDITTD--ECRSKL---- 102 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----------ccCCcc--chhhhhhhHH--HHHHHH----
Confidence 668899999999999999988874 43 45899998772 122210 0001111000 000011
Q ss_pred cccccccccCCCCCCceeEEEeccch----hHH----------HHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILL----NPL----------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~----~~~----------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
+.+....+.|+|+.+... .+. ...+.-+...|+.||.++--.+.......+...+.+.
T Consensus 103 --------~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~~qL 174 (780)
T KOG1098|consen 103 --------RKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVFGQL 174 (780)
T ss_pred --------HHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchHHHHHHHHH
Confidence 111134456888885442 111 1235556678899999766566666777777777776
Q ss_pred hhhhc
Q 041459 200 LEDIL 204 (225)
Q Consensus 200 ~~~~~ 204 (225)
|..+.
T Consensus 175 f~kv~ 179 (780)
T KOG1098|consen 175 FKKVE 179 (780)
T ss_pred HHHHH
Confidence 65443
No 311
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.62 E-value=0.55 Score=41.40 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=58.9
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++++|+=.|+|. |.++..+++ .|..+++++|.++.-++.+++ .+.. .........+ .+.+..
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~----~~i~~~~~~~----~~~i~~-- 254 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT----ATVNAGDPNA----VEQVRE-- 254 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc----eEeCCCchhH----HHHHHH--
Confidence 45788888888764 555555565 466679999999988887754 2321 0111110110 011111
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
. ..+.+|+++-.... ...+....+.++++|.++..+.
T Consensus 255 ----------~-~~~g~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 255 ----------L-TGGGVDYAFEMAGS---VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred ----------H-hCCCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEEcc
Confidence 1 12268999864322 2345667789999999887544
No 312
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=92.59 E-value=0.27 Score=44.91 Aligned_cols=126 Identities=16% Similarity=0.155 Sum_probs=78.5
Q ss_pred CCCcEEEEcccccHHHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAI-KFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~-~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.+..++=+|-|.|.+..++. +.+..++++++++|.+++.|..+.....- ++..++..++-.+ +.....
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~--~r~~V~i~dGl~~-------~~~~~k-- 363 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS--DRNKVHIADGLDF-------LQRTAK-- 363 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh--hhhhhhHhhchHH-------HHHHhh--
Confidence 34577888888899988765 46778899999999999999887653221 1222333333211 111000
Q ss_pred ccccccCCCCCCceeEEEeccc-----------hhHH-HHHHHHHHHhccCCeEEEEeccCC--CcHHHHHHHHHhhh
Q 041459 137 SSHEIRGISETEKYDVVIANIL-----------LNPL-LQLADHIVSYAKPGAVVGISGILS--EQLPHIINRYSEFL 200 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~-----------~~~~-~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~~ 200 (225)
.-..+.+||+++.+.- .... ..++..+...|.|.|.+++..... ....++...+++.|
T Consensus 364 ------~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf 435 (482)
T KOG2352|consen 364 ------SQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVF 435 (482)
T ss_pred ------ccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhh
Confidence 0014567999988421 1112 346788889999999999865543 34455666666554
No 313
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.46 E-value=1.9 Score=37.32 Aligned_cols=91 Identities=19% Similarity=0.105 Sum_probs=56.1
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|.+||=.|+|. |.+++.+++ .|. ++++++.++.-++.+++ .+... .. +....
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~----vi--~~~~~------------ 219 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS----AG--GAYDT------------ 219 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce----ec--ccccc------------
Confidence 55788999999764 445555555 454 59999999888777754 33220 10 00000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
..+.+|+++..... ...+....+.|++||++++.+.
T Consensus 220 ------------~~~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 220 ------------PPEPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ------------CcccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence 12347765542222 2357778889999999988655
No 314
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.46 E-value=0.089 Score=38.89 Aligned_cols=91 Identities=20% Similarity=0.325 Sum_probs=57.8
Q ss_pred cccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCC
Q 041459 68 GSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISE 146 (225)
Q Consensus 68 GtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (225)
|.|.+++.+++ .| .+++++|.++.-++.+++. +.. .+.......+ .+.+... ..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~----Ga~----~~~~~~~~~~----~~~i~~~------------~~ 55 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL----GAD----HVIDYSDDDF----VEQIREL------------TG 55 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT----TES----EEEETTTSSH----HHHHHHH------------TT
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh----ccc----cccccccccc----ccccccc------------cc
Confidence 45778887776 46 8899999999988888653 321 1222111111 1111111 13
Q ss_pred CCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCC
Q 041459 147 TEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 147 ~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (225)
...+|+++-+..- ...++...++|+++|.+++.+...
T Consensus 56 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 56 GRGVDVVIDCVGS---GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp TSSEEEEEESSSS---HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cccceEEEEecCc---HHHHHHHHHHhccCCEEEEEEccC
Confidence 4579999876542 346677888999999999976654
No 315
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.46 E-value=1 Score=38.55 Aligned_cols=101 Identities=21% Similarity=0.181 Sum_probs=67.5
Q ss_pred CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCC-CCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR-TFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 135 (225)
.|+.|+=+| -.-..+++++- .-+.++..+||++..++...+.+...++++ +.....|.. .+|.+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~--ie~~~~Dlr~plpe~----------- 217 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN--IEAFVFDLRNPLPED----------- 217 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc--hhheeehhcccChHH-----------
Confidence 467788888 44455665443 335779999999999999999998888764 333322221 11100
Q ss_pred cccccccCCCCCCceeEEEeccchh--HHHHHHHHHHHhccCC---eEEEEe
Q 041459 136 LSSHEIRGISETEKYDVVIANILLN--PLLQLADHIVSYAKPG---AVVGIS 182 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~~Lkpg---G~l~~~ 182 (225)
-.++||+++.+||.. .++.++..-...||-- |++.++
T Consensus 218 ----------~~~kFDvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 218 ----------LKRKFDVFITDPPETIKALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred ----------HHhhCCeeecCchhhHHHHHHHHhccHHHhcCCCccceEeee
Confidence 246899999999864 4566777766677765 666664
No 316
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.45 E-value=2.1 Score=36.96 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=66.8
Q ss_pred CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++|+=+|+|. | .++..|++.|. .|+.++-++..++..+++ .|+. +.. .+..........
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~---~Gl~-----i~~-~g~~~~~~~~~~--------- 63 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQA---GGLT-----LVE-QGQASLYAIPAE--------- 63 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhc---CCeE-----Eee-CCcceeeccCCC---------
Confidence 5688999997 5 45666777765 489999877666555432 1211 110 000000000000
Q ss_pred cccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHH
Q 041459 138 SHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 196 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (225)
.....+.+|+|+...--.+....+..+...+.++..+++..++-...+.+.+.+
T Consensus 64 -----~~~~~~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~ 117 (305)
T PRK05708 64 -----TADAAEPIHRLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARV 117 (305)
T ss_pred -----CcccccccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhC
Confidence 000235799998876666777888899999999998877656555555555443
No 317
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=92.45 E-value=1 Score=39.62 Aligned_cols=19 Identities=26% Similarity=0.174 Sum_probs=13.5
Q ss_pred CCCcEEEEcccccHHHHHH
Q 041459 58 GGELFLDYGTGSGILGIAA 76 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l 76 (225)
+..+|+|+||.+|..++.+
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~ 34 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLA 34 (334)
T ss_dssp TEEEEEEES--SSHHHHHH
T ss_pred CceEEEecCCCCCccHHHH
Confidence 3469999999999887764
No 318
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=92.44 E-value=0.61 Score=39.64 Aligned_cols=54 Identities=30% Similarity=0.469 Sum_probs=43.8
Q ss_pred HHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459 50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN 104 (225)
Q Consensus 50 ~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~ 104 (225)
+.+......+..|+|..+|+|+.++.+...+.. ++|+|+++...+.+.+++...
T Consensus 214 r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~-~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 214 RLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRR-FIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHhcCCCCCEEeecCCCCChHHHHHHHcCCc-eEEEecCHHHHHHHHHHHHhh
Confidence 344444557899999999999999988777544 899999999999998887633
No 319
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=92.07 E-value=0.33 Score=42.56 Aligned_cols=51 Identities=27% Similarity=0.498 Sum_probs=40.8
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNI 106 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~ 106 (225)
+++|.+|.=+|||. |..++.-++ .++.+++++|+++.-+++|++.-..+.+
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~v 235 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFV 235 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceee
Confidence 66899999999997 776776554 6899999999999999999875444433
No 320
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=92.03 E-value=1.8 Score=38.75 Aligned_cols=18 Identities=28% Similarity=0.172 Sum_probs=14.4
Q ss_pred CCcEEEEcccccHHHHHH
Q 041459 59 GELFLDYGTGSGILGIAA 76 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l 76 (225)
..+|+|+|||+|..++.+
T Consensus 64 ~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred ceeEEEecCCCCccHHHH
Confidence 458999999999776554
No 321
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.59 E-value=0.47 Score=40.07 Aligned_cols=99 Identities=22% Similarity=0.212 Sum_probs=57.9
Q ss_pred cCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 57 KGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 57 ~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.++++|+=+|+|+ |.++..+++ .|..+++++|.++.-++.+++. +... ... ..... +....
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~----~i~--~~~~~----~~~~~--- 181 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GATA----LAE--PEVLA----ERQGG--- 181 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCcE----ecC--chhhH----HHHHH---
Confidence 3678899888765 555555555 4666699999999887777642 3210 000 00000 00000
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
......+|+++-...- ...+..+.+.++++|.+++...
T Consensus 182 ---------~~~~~g~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 182 ---------LQNGRGVDVALEFSGA---TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ---------HhCCCCCCEEEECCCC---hHHHHHHHHHhcCCCEEEEecc
Confidence 0123468998864321 2346677889999999987654
No 322
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.54 E-value=0.75 Score=37.71 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=58.3
Q ss_pred cCCCcEEEEcccc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|+..|+|+ |.....+++....++++++.++...+.++.. +.. .......... .+.+.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~----~~~~~~~~~~----~~~~~----- 195 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD----HVIDYKEEDL----EEELR----- 195 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc----eeccCCcCCH----HHHHH-----
Confidence 5788999999986 5555555554337799999998777666432 211 0110000000 00000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
......+|+++.+.... ..+..+.+.++++|.++....
T Consensus 196 --------~~~~~~~d~vi~~~~~~---~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 196 --------LTGGGGADVVIDAVGGP---ETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred --------HhcCCCCCEEEECCCCH---HHHHHHHHhcccCCEEEEEcc
Confidence 01345799998765431 345667788899999887543
No 323
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.48 E-value=0.97 Score=34.32 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=38.0
Q ss_pred CCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHH
Q 041459 147 TEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 196 (225)
Q Consensus 147 ~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (225)
...+|+|+...--......++.+.+.+.++..+++..++-...+.+.+.+
T Consensus 65 ~~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 65 AGPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp HSTESEEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred cCCCcEEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 56799999988777788899999999999988888666655555554444
No 324
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=91.35 E-value=0.72 Score=41.13 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=34.9
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHH
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQN 100 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~ 100 (225)
+-..++|+|+|.|.++..++-.....|.++|-|....+.|++.
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 4479999999999999998865456699999998777776543
No 325
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=91.34 E-value=3.6 Score=34.19 Aligned_cols=95 Identities=22% Similarity=0.148 Sum_probs=55.9
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
.+++.+++-.|+|. |..++.+++ .+..++++++.++...+.+++. +.. +.+ ... .....
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~-~~~-~~~-~~~~~------------ 155 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPA-DPV-AAD-TADEI------------ 155 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCC-ccc-ccc-chhhh------------
Confidence 45678888888765 555555555 4554599999988887766542 211 000 000 00000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
....+|+++..... ...+....+.++++|.++..+.
T Consensus 156 ------------~~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 156 ------------GGRGADVVIEASGS---PSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred ------------cCCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEEEec
Confidence 23468998864322 2345677788999999886443
No 326
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.07 E-value=0.74 Score=39.40 Aligned_cols=101 Identities=20% Similarity=0.269 Sum_probs=59.0
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
+.++.+||..|+|. |..++.+++....++++++.++...+.+++ .+.. .......... .... .
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~----~~~~~~~~~~----~~~~-~--- 226 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD----EVLNSLDDSP----KDKK-A--- 226 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC----EEEcCCCcCH----HHHH-H---
Confidence 45678888887763 666666666433459999999988777743 2322 0111111010 0000 0
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
......+|+++.+... ...+..+.+.|+++|.++..+.
T Consensus 227 ---------~~~~~~~D~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 227 ---------AGLGGGFDVIFDFVGT---QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ---------HhcCCCceEEEECCCC---HHHHHHHHHHhhcCCEEEEECC
Confidence 0134569998864322 2456677899999999987543
No 327
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.85 E-value=1.7 Score=37.95 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=56.4
Q ss_pred cCCCcEEEEcccc-cHHHHHHHhc-CCCeEEEEeC---CHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccc
Q 041459 57 KGGELFLDYGTGS-GILGIAAIKF-GAAMSVGVDI---DPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDG 131 (225)
Q Consensus 57 ~~~~~vlDiGcGt-G~~~~~l~~~-~~~~v~~vDi---~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (225)
+++.+|+=.|+|. |.++..+++. |. ++++++. ++.-++.+++ .+.. . +. ...+... +
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga~--~--v~-~~~~~~~----~---- 232 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGAT--Y--VN-SSKTPVA----E---- 232 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCCE--E--ec-CCccchh----h----
Confidence 4688999988875 5666666664 55 6999987 5666665543 2321 0 11 0000000 0
Q ss_pred cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
. .....+|+|+-...-. ..+..+.+.|+++|.+++.+..
T Consensus 233 ~------------~~~~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 233 V------------KLVGEFDLIIEATGVP---PLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred h------------hhcCCCCEEEECcCCH---HHHHHHHHHccCCcEEEEEecC
Confidence 0 0234689988754322 2567788899999999875543
No 328
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=90.72 E-value=0.99 Score=39.20 Aligned_cols=102 Identities=18% Similarity=0.290 Sum_probs=57.3
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
.+++.+|+=.|+|+ |.+++.+++ .|...+++++.++.-++.+++ .+.. .......... +.+.
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~-----~~~~--- 221 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAM----QTFNSREMSA-----PQIQ--- 221 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc----eEecCcccCH-----HHHH---
Confidence 44688898888765 555555555 466668999999988777643 2321 0110000000 0000
Q ss_pred cccccccccCCCCCCcee-EEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 134 EDLSSHEIRGISETEKYD-VVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D-vIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
.......+| +++-...- ...+....++|++||.+++.+..
T Consensus 222 ---------~~~~~~~~d~~v~d~~G~---~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 222 ---------SVLRELRFDQLILETAGV---PQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred ---------HHhcCCCCCeEEEECCCC---HHHHHHHHHHhhcCCEEEEEccC
Confidence 011234577 55543222 23566777899999999886553
No 329
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=90.22 E-value=0.7 Score=36.23 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhhccCCCcEEEEcccccHHHHH-HHhcCCC-eEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCC
Q 041459 44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIA-AIKFGAA-MSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 121 (225)
Q Consensus 44 ~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~-l~~~~~~-~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 121 (225)
....+...|......|++|.=.|+|+...++. .+..... --..+|.+|. ++.... ....+.+. ..+.+
T Consensus 53 ~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~-----K~G~~~---PGt~ipI~--~p~~l 122 (160)
T PF08484_consen 53 SKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPL-----KQGKYL---PGTHIPIV--SPEEL 122 (160)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GG-----GTTEE----TTT--EEE--EGGG-
T ss_pred HHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChh-----hcCccc---CCCCCeEC--CHHHH
Confidence 33444455555555789999999999766653 4444222 3468898872 111111 11112222 11111
Q ss_pred CccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
.....|.++. .+.....++++.+...++.||.+++
T Consensus 123 ------------------------~~~~pd~viv-law~y~~EI~~~~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 123 ------------------------KERKPDYVIV-LAWNYKDEIIEKLREYLERGGKFIV 157 (160)
T ss_dssp -------------------------SS--SEEEE-S-GGGHHHHHHHTHHHHHTT-EEEE
T ss_pred ------------------------hhCCCCEEEE-cChhhHHHHHHHHHHHHhcCCEEEE
Confidence 2445677665 3345567888888899999999987
No 330
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.22 E-value=1.2 Score=38.50 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=57.2
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+||=.|+|. |.+++.+++ .|..++++++.++.-++.+++. +.. .+........ +.+.
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~----~~i~~~~~~~-----~~~~--- 224 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GAD----FVINSGQDDV-----QEIR--- 224 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC----EEEcCCcchH-----HHHH---
Confidence 45688898888754 445555555 4666699999998887776532 321 0111000000 0000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.......+|+++-...-. ..+....+.|+++|.+++.+.
T Consensus 225 ---------~~~~~~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 225 ---------ELTSGAGADVAIECSGNT---AARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred ---------HHhCCCCCCEEEECCCCH---HHHHHHHHHhhcCCEEEEEcC
Confidence 011334699998643322 234566788999999987544
No 331
>PLN02740 Alcohol dehydrogenase-like
Probab=90.18 E-value=2.6 Score=37.35 Aligned_cols=44 Identities=25% Similarity=0.540 Sum_probs=33.1
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHH
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~ 99 (225)
+++|++||=.|+|. |.+++.+++ .|..+++++|.++.-++.+++
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 55788999998865 555555565 466579999999988888754
No 332
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=90.07 E-value=2.7 Score=36.05 Aligned_cols=99 Identities=16% Similarity=0.232 Sum_probs=57.3
Q ss_pred ccCCCcEEEEcc-c-ccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC-CCCCcccccccccc
Q 041459 56 IKGGELFLDYGT-G-SGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGc-G-tG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 132 (225)
+++|.+||=.|+ | .|.+++.+++....++++++.++...+.++. .+.+ .+...+. ..+. +...
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~----~vi~~~~~~~~~----~~~~-- 201 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD----VAFNYKTVKSLE----ETLK-- 201 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC----EEEeccccccHH----HHHH--
Confidence 557889988884 3 4677777776433468999988877776643 2322 1111111 1110 0000
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
.. ..+.+|+++-...- ..+....+.|+++|.++..+
T Consensus 202 ----------~~-~~~gvdvv~d~~G~----~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 202 ----------KA-SPDGYDCYFDNVGG----EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred ----------Hh-CCCCeEEEEECCCH----HHHHHHHHHhCcCcEEEEec
Confidence 11 23469999864332 23567788999999998643
No 333
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=89.85 E-value=0.81 Score=38.33 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=33.3
Q ss_pred CCcEEEEcccccHHHHHHHhc---------CCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 59 GELFLDYGTGSGILGIAAIKF---------GAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~---------~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
..+|+|+|+|+|.++..+++. ...+|+.+|+||.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 369999999999998876542 135799999999888777777654
No 334
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.44 E-value=1.3 Score=39.58 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=40.5
Q ss_pred CCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 41 EHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 41 ~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
.++..+.-++.|. +.++++||-| ++.|..++.++..+.++|++||+||..+...+-++
T Consensus 20 ~WEDp~vD~~aL~--i~~~d~vl~I-tSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 20 CWEDPRVDMEALN--IGPDDRVLTI-TSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred ccCCcHHHHHHhC--CCCCCeEEEE-ccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 3555555556663 3478899999 55666666555555678999999999887765444
No 335
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.31 E-value=2.5 Score=37.96 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=30.9
Q ss_pred CcEEEEcccc-cHHHHH-HHhcCCCeEEEEeCCHHHHHHHHHH
Q 041459 60 ELFLDYGTGS-GILGIA-AIKFGAAMSVGVDIDPQAIKSAHQN 100 (225)
Q Consensus 60 ~~vlDiGcGt-G~~~~~-l~~~~~~~v~~vDi~~~~l~~a~~~ 100 (225)
++||=+|||. |....+ +++.+..+|+.+|.+....+.+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~ 44 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL 44 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh
Confidence 5789999975 544444 5677778899999998887777554
No 336
>PRK10458 DNA cytosine methylase; Provisional
Probab=88.93 E-value=1.8 Score=39.83 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=37.0
Q ss_pred CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
..+++|++||.|.+..-+-..|...+.++|+++.+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 4599999999999999887778778899999998888777764
No 337
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.83 E-value=0.96 Score=39.42 Aligned_cols=48 Identities=29% Similarity=0.397 Sum_probs=37.5
Q ss_pred hccCCCcEEEEcccccHH-HHHHHh-cCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 55 LIKGGELFLDYGTGSGIL-GIAAIK-FGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 55 ~~~~~~~vlDiGcGtG~~-~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
.+++|.++.-+|+|.=.+ .+.-++ .|+++++|+|+++.-.+.|++.-.
T Consensus 189 kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGa 238 (375)
T KOG0022|consen 189 KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGA 238 (375)
T ss_pred ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCc
Confidence 467899999999998444 444444 689999999999999999986543
No 338
>PLN02827 Alcohol dehydrogenase-like
Probab=88.81 E-value=2.8 Score=37.19 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=58.0
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC-CCCCcccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 132 (225)
+++|.+||-.|+|+ |.+++.+++ .|...++++|.++...+.|++ .+... .+...+. ..+ .+.+...
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~---~i~~~~~~~~~----~~~v~~~ 259 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTD---FINPNDLSEPI----QQVIKRM 259 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcE---EEcccccchHH----HHHHHHH
Confidence 45788999988765 555555555 576679999998887777643 23220 0110000 000 0111111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC-eEEEEeccC
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGIL 185 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 185 (225)
....+|+++-...-. ..+....+.+++| |.+++.+..
T Consensus 260 -------------~~~g~d~vid~~G~~---~~~~~~l~~l~~g~G~iv~~G~~ 297 (378)
T PLN02827 260 -------------TGGGADYSFECVGDT---GIATTALQSCSDGWGLTVTLGVP 297 (378)
T ss_pred -------------hCCCCCEEEECCCCh---HHHHHHHHhhccCCCEEEEECCc
Confidence 122689998643321 2355677788998 999875443
No 339
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=88.71 E-value=1.5 Score=38.15 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=58.5
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
.+++.+||-.|+|. |..++.+++ .|...++++|.++...+.+++ .+.. .+.......+. +.
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~v~~~~~~~~----~~----- 226 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT----DIVDYKNGDVV----EQ----- 226 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc----eEecCCCCCHH----HH-----
Confidence 45688888887764 455555555 466679999999887777663 2321 01111111110 00
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+........+|+++....- ...+..+.+.|+++|.++..+.
T Consensus 227 -------i~~~~~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 227 -------ILKLTGGKGVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred -------HHHHhCCCCCcEEEECCCC---HHHHHHHHHHhhcCCEEEEecc
Confidence 0111134568999864322 2356677888999999886544
No 340
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=88.20 E-value=2.2 Score=37.80 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=40.8
Q ss_pred HHHHHHHhhccC-CCcEEEEcccccHHHHHHHhc---------CCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459 47 LCLLLLQSLIKG-GELFLDYGTGSGILGIAAIKF---------GAAMSVGVDIDPQAIKSAHQNAALN 104 (225)
Q Consensus 47 ~~~~~L~~~~~~-~~~vlDiGcGtG~~~~~l~~~---------~~~~v~~vDi~~~~l~~a~~~~~~~ 104 (225)
.+.+++.....+ ...++|+|+|+|.++..+++. ...+|..+|+|++..+.-++++...
T Consensus 65 ~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 65 QFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 334444444333 457999999999998765532 2578999999998887777766543
No 341
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.13 E-value=7.7 Score=27.77 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=52.7
Q ss_pred ccccHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccC
Q 041459 67 TGSGILGIAAIK---FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRG 143 (225)
Q Consensus 67 cGtG~~~~~l~~---~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (225)
||.|.++..+++ .....++.+|.+++.++.++.. + +.+..++.... +.+...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~-----~~~i~gd~~~~-----~~l~~a----------- 58 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G-----VEVIYGDATDP-----EVLERA----------- 58 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T-----SEEEES-TTSH-----HHHHHT-----------
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c-----cccccccchhh-----hHHhhc-----------
Confidence 566666666543 2445799999999988777543 2 23555554332 111111
Q ss_pred CCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 144 ISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 144 ~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.-.+.+.+++...-+.....+....+.+.|...++..
T Consensus 59 --~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 59 --GIEKADAVVILTDDDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp --TGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred --CccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 3456888887665554444555566777788777764
No 342
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=87.69 E-value=3.8 Score=35.30 Aligned_cols=100 Identities=27% Similarity=0.400 Sum_probs=55.4
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
.+++.+|+-.|+|. |..++.+++ .|...+++++-++...+.++. .+.. .+........ +.+
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~----~~~~~~~~~~-----~~~---- 219 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD----DTINPKEEDV-----EKV---- 219 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC----EEecCccccH-----HHH----
Confidence 45678888887654 555555555 455558999888776665532 2321 1111100000 000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
........+|+++.+..- ...+..+.+.|+++|.++..+
T Consensus 220 --------~~~~~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 220 --------RELTEGRGADLVIEAAGS---PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred --------HHHhCCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence 001133459999865321 235667788899999987654
No 343
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=87.68 E-value=2 Score=37.06 Aligned_cols=100 Identities=22% Similarity=0.364 Sum_probs=55.1
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
.+++.+||-.|+|. |..++.+++ .+...+++++.++...+.+++. +.. .+.......+. +.
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~----~vi~~~~~~~~----~~----- 227 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GAT----DIINPKNGDIV----EQ----- 227 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCc----EEEcCCcchHH----HH-----
Confidence 45678888877653 555555555 4555788888888776665532 211 11111100010 00
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
+......+.+|+++...... ..+....+.|+++|.++..
T Consensus 228 -------i~~~~~~~~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 228 -------ILELTGGRGVDCVIEAVGFE---ETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred -------HHHHcCCCCCcEEEEccCCH---HHHHHHHHHhhcCCEEEEE
Confidence 01111345689998643221 3566777889999998754
No 344
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=87.67 E-value=5 Score=35.32 Aligned_cols=44 Identities=23% Similarity=0.462 Sum_probs=33.1
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHH
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~ 99 (225)
++++++||=.|+|. |.+++.+++ .|..+++++|.++..++.+++
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 45788999898865 555666665 466679999999988887754
No 345
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=87.54 E-value=1.3 Score=42.34 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=26.0
Q ss_pred CceeEEEecc--c-hh---HHHHHHHHHHHhccCCeEEEE
Q 041459 148 EKYDVVIANI--L-LN---PLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 148 ~~~DvIi~~~--~-~~---~~~~~l~~~~~~LkpgG~l~~ 181 (225)
..+|+++.+. | .+ +-.+++..+.++++|||++.-
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 4699999863 2 11 246789999999999999874
No 346
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.48 E-value=3 Score=37.77 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=56.4
Q ss_pred cCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 57 KGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 57 ~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
..|++|+=+|+|. |.....+++ .|+ +++++|.++.-+..|+. .+.. ... ...
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~~-----~~~--~~e-------------- 253 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGYE-----VMT--MEE-------------- 253 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCCE-----Ecc--HHH--------------
Confidence 3689999999998 555554444 566 69999999987766653 2321 110 000
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHH-HHHhccCCeEEEEeccC
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADH-IVSYAKPGAVVGISGIL 185 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~ 185 (225)
.-...|+|+....- ...+.. ..+.+|+||+++..+..
T Consensus 254 -----------~v~~aDVVI~atG~---~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 254 -----------AVKEGDIFVTTTGN---KDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred -----------HHcCCCEEEECCCC---HHHHHHHHHhcCCCCcEEEEeCCC
Confidence 11347999875432 233443 47899999999876654
No 347
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=87.20 E-value=8.2 Score=32.72 Aligned_cols=107 Identities=17% Similarity=0.130 Sum_probs=58.9
Q ss_pred cEEEEcccc-cH-HHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459 61 LFLDYGTGS-GI-LGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS 138 (225)
Q Consensus 61 ~vlDiGcGt-G~-~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (225)
+|.=+|+|. |. ++..+++.| .+|+.++.++..++..++ .++..+..... ...... +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~-~~~~~~------------~---- 59 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARRGAHLDALNE----NGLRLEDGEIT-VPVLAA------------D---- 59 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEECChHHHHHHHH----cCCcccCCcee-ecccCC------------C----
Confidence 577788887 32 333455555 469999987766655443 23221000000 000000 0
Q ss_pred ccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHH
Q 041459 139 HEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHII 193 (225)
Q Consensus 139 ~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 193 (225)
.......+|+|+...+......+++.+...+.++..++....+-.....+.
T Consensus 60 ----~~~~~~~~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~ 110 (304)
T PRK06522 60 ----DPAELGPQDLVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELA 110 (304)
T ss_pred ----ChhHcCCCCEEEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHH
Confidence 000125789999887766778888888888888877766444333333333
No 348
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=87.09 E-value=4.4 Score=34.98 Aligned_cols=50 Identities=18% Similarity=0.005 Sum_probs=36.1
Q ss_pred CCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHH
Q 041459 147 TEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 196 (225)
Q Consensus 147 ~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (225)
...+|+|+...........++.+...+++++.++....+-...+.+.+.+
T Consensus 70 ~~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~ 119 (313)
T PRK06249 70 MPPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREIL 119 (313)
T ss_pred cCCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHC
Confidence 35689999877766667788888888999998877655555555555443
No 349
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=87.01 E-value=2 Score=37.65 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=59.1
Q ss_pred ccCCCcEEEEcc-c-ccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEec-CCCCCcccccccccc
Q 041459 56 IKGGELFLDYGT-G-SGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVP-DRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGc-G-tG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 132 (225)
+++|.+||=.|+ | .|.+++.+++.-..++++++.++...+.+++. .+.. .+.... ...+. +.+.
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~----~vi~~~~~~~~~----~~i~-- 222 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD----EAFNYKEEPDLD----AALK-- 222 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC----EEEECCCcccHH----HHHH--
Confidence 567899999887 3 46777777764334689999888777666532 2322 111111 00110 0000
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.. ....+|+++-...- ..+..+.+.|+++|.+++.+.
T Consensus 223 ----------~~-~~~gvD~v~d~vG~----~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 223 ----------RY-FPEGIDIYFDNVGG----DMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred ----------HH-CCCCcEEEEECCCH----HHHHHHHHHhccCCEEEEECc
Confidence 11 12468999864431 356778889999999987544
No 350
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=86.86 E-value=4.1 Score=32.15 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=24.0
Q ss_pred CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCH
Q 041459 59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDP 91 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~ 91 (225)
+++.+-+|...=-.-..+.++|+++++.+|.++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~ 34 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNK 34 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecc
Confidence 566777776655555556678899999999866
No 351
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=86.83 E-value=1.9 Score=36.25 Aligned_cols=74 Identities=26% Similarity=0.359 Sum_probs=48.0
Q ss_pred HHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCcee
Q 041459 73 GIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYD 151 (225)
Q Consensus 73 ~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 151 (225)
+..+.+.+ ..+|+|.|.++..++.|.+ .++.. -...+.+ .-..+|
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~----~g~~~----~~~~~~~--------------------------~~~~~D 47 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALE----LGIID----EASTDIE--------------------------AVEDAD 47 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHH----TTSSS----EEESHHH--------------------------HGGCCS
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHH----CCCee----eccCCHh--------------------------HhcCCC
Confidence 44556655 5789999999999887753 23321 1110000 123469
Q ss_pred EEEeccchhHHHHHHHHHHHhccCCeEEE
Q 041459 152 VVIANILLNPLLQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 152 vIi~~~~~~~~~~~l~~~~~~LkpgG~l~ 180 (225)
+|+...|......+++++...+++|+++.
T Consensus 48 lvvlavP~~~~~~~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 48 LVVLAVPVSAIEDVLEEIAPYLKPGAIVT 76 (258)
T ss_dssp EEEE-S-HHHHHHHHHHHHCGS-TTSEEE
T ss_pred EEEEcCCHHHHHHHHHHhhhhcCCCcEEE
Confidence 99999999999999999999999997664
No 352
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=86.81 E-value=1.1 Score=37.21 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=31.5
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
+..+++|+.||+|.++..+.. ...+++.-|+++..+...+..+.
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHHHHh
Confidence 578999999999999998765 45679999999988777764443
No 353
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=86.57 E-value=3.3 Score=35.51 Aligned_cols=89 Identities=20% Similarity=0.194 Sum_probs=58.2
Q ss_pred CcEEEEcccc--cHHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 60 ELFLDYGTGS--GILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 60 ~~vlDiGcGt--G~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.+|+=+|.|- |.++..+.+.|. ..+++.|.+...++.+.. .++.. ........
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d-----~~~~~~~~--------------- 59 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVID-----ELTVAGLA--------------- 59 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCccc-----ccccchhh---------------
Confidence 4677788775 355556666554 458999998877766652 23221 00000000
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEE
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~ 180 (225)
......|+|+...|......+++++...|++|..+.
T Consensus 60 --------~~~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 60 --------EAAAEADLVIVAVPIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred --------hhcccCCEEEEeccHHHHHHHHHHhcccCCCCCEEE
Confidence 034558999999999999999999999999996653
No 354
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=85.84 E-value=5.9 Score=34.35 Aligned_cols=113 Identities=13% Similarity=0.089 Sum_probs=66.0
Q ss_pred CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++|+-+|+|. | .++..+++.| ..++.+-.++. ++..+++ |+. +.......... ....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~----GL~-----i~~~~~~~~~~-------~~~~--- 59 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKK----GLR-----IEDEGGNFTTP-------VVAA--- 59 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-HHHHHhC----CeE-----EecCCCccccc-------cccc---
Confidence 3678899997 4 5566788888 55666665554 4444432 322 11111100000 0000
Q ss_pred cccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHH
Q 041459 138 SHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS 197 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 197 (225)
........+|+|+...--....+.++.+...+++...+++.-++-...+.+.....
T Consensus 60 ----~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~ 115 (307)
T COG1893 60 ----TDAEALGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILP 115 (307)
T ss_pred ----cChhhcCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCC
Confidence 00013457999998776677888999999999999988876555555554544443
No 355
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=85.83 E-value=15 Score=28.82 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=30.6
Q ss_pred CCCceeEEEeccchhH----------------HHHHHHHHHHhccCCeEEEEecc
Q 041459 146 ETEKYDVVIANILLNP----------------LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 146 ~~~~~DvIi~~~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
...+||.|+.|.|-.. +..++..+.++|+++|.+.++-.
T Consensus 72 ~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~ 126 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLK 126 (166)
T ss_pred cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 4678999999988422 34578889999999999998633
No 356
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=85.81 E-value=7.6 Score=33.04 Aligned_cols=46 Identities=15% Similarity=0.049 Sum_probs=31.5
Q ss_pred CceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHH
Q 041459 148 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHII 193 (225)
Q Consensus 148 ~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 193 (225)
..+|+|+...+-.....+++.+...+.++..++....+-.....+.
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~ 112 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLE 112 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHH
Confidence 5689988877766677888888888888877665434433333333
No 357
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=85.75 E-value=3 Score=37.30 Aligned_cols=106 Identities=21% Similarity=0.405 Sum_probs=59.9
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++++|+=.|+|. |.+++.+++ .|...++++|.++.-++.|++. +.. .+.......+. +.+.
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~----~v~~~~~~~~~----~~v~--- 247 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE----TVDLSKDATLP----EQIE--- 247 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe----EEecCCcccHH----HHHH---
Confidence 45678887777765 555555555 5777677889888777777642 321 11111000110 0000
Q ss_pred cccccccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEeccC
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
.......+|+++-...... ....++.+.+++++||.+++.+..
T Consensus 248 ---------~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 248 ---------QILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred ---------HHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 0112346899886433210 124677888899999999986654
No 358
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=85.74 E-value=4.8 Score=35.01 Aligned_cols=43 Identities=33% Similarity=0.589 Sum_probs=32.2
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHH
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~ 99 (225)
++++.+|+=.|+|+ |..++.+++ .|. +++++|.++..++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 45688999999865 566666665 455 69999999988877754
No 359
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.48 E-value=1.3 Score=41.30 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=31.4
Q ss_pred CCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHH
Q 041459 58 GGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~ 99 (225)
++.+++=+|+|. |..+..+++ .|+ .++++|.++..++.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 457999999997 566666555 565 49999999998777764
No 360
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=85.38 E-value=6.2 Score=33.90 Aligned_cols=89 Identities=24% Similarity=0.287 Sum_probs=55.2
Q ss_pred CcEEEEcccc-c-HHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 60 ELFLDYGTGS-G-ILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 60 ~~vlDiGcGt-G-~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.+|.=+|+|. | .++..+.+.+. .+++++|.++..++.+++ .+... .. ..+...
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~---~~-~~~~~~---------------- 62 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD---RV-TTSAAE---------------- 62 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc---ee-cCCHHH----------------
Confidence 5688888886 3 33334555554 479999999987766643 23210 00 000000
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
.....|+|+...|......++..+...++++.+++.
T Consensus 63 ---------~~~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 63 ---------AVKGADLVILCVPVGASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred ---------HhcCCCEEEECCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence 123579999988877777778888888899876543
No 361
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=84.92 E-value=8.3 Score=32.78 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=56.4
Q ss_pred ccCCCcEEEEcc--cccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGc--GtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|.+||=.|+ |.|..++.+++....++++++.++...+.+++ .+.. .+.......+. +.+.
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~----~vi~~~~~~~~----~~v~--- 205 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD----AVFNYKTVSLE----EALK--- 205 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC----EEEeCCCccHH----HHHH---
Confidence 457888888874 23666666666433468999988877777654 2322 11111111110 1110
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.. ....+|+|+-... ...+....+.|+++|.++..
T Consensus 206 ---------~~-~~~gvd~vld~~g----~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 206 ---------EA-APDGIDCYFDNVG----GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred ---------HH-CCCCcEEEEECCC----HHHHHHHHHhhccCCEEEEE
Confidence 11 1256899985332 13467788899999998764
No 362
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=84.51 E-value=2.7 Score=36.90 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=58.2
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCC-CCCcccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR-TFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 132 (225)
++++.+||=.|+|. |.+++.+++ .|..+++++|.++.-++.+++ .+.. ..+...+.+ .+ .+.+..
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~----~~~v~~- 251 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGAT---DCVNPKDHDKPI----QQVLVE- 251 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC---EEEcccccchHH----HHHHHH-
Confidence 45788999888754 455555555 466579999999988877753 2322 111111000 00 011111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC-eEEEEeccC
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGIL 185 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 185 (225)
. ..+.+|+|+-...- ...+..+.+.++++ |.++..+..
T Consensus 252 -----------~-~~~g~d~vid~~g~---~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 252 -----------M-TDGGVDYTFECIGN---VKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred -----------H-hCCCCcEEEECCCC---hHHHHHHHHhhccCCCeEEEEccC
Confidence 1 12368999864321 23566677889887 888875543
No 363
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=83.84 E-value=9.8 Score=33.33 Aligned_cols=44 Identities=30% Similarity=0.543 Sum_probs=31.4
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHH
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~ 99 (225)
++++.+|+=.|+|. |.+++.+++ .|..+++++|.++.-++.+++
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 45788898888754 445555555 466679999999888777753
No 364
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=83.47 E-value=33 Score=30.74 Aligned_cols=97 Identities=14% Similarity=0.023 Sum_probs=63.1
Q ss_pred cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccccc
Q 041459 61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHE 140 (225)
Q Consensus 61 ~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (225)
.|+-++=.-|.++..++..+.. ...|. -..-...++|+..+++..+.+... +...-
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~--~~~ds-~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~------------------- 102 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY--SIGDS-YISELATRENLRLNGIDESSVKFL--DSTAD------------------- 102 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC--eeehH-HHHHHHHHHHHHHcCCCcccceee--ccccc-------------------
Confidence 7899999999999988854332 22331 223334578888888764434333 11110
Q ss_pred ccCCCCCCceeEEEeccchh--HHHHHHHHHHHhccCCeEEEEeccCC
Q 041459 141 IRGISETEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 141 ~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (225)
....+|+|+.-.|-. .....+..+...|.||+.++..+...
T Consensus 103 -----~~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~k 145 (378)
T PRK15001 103 -----YPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKAR 145 (378)
T ss_pred -----ccCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 245589999877753 45567888999999999988755443
No 365
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.93 E-value=26 Score=29.65 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=60.9
Q ss_pred cEEEEcccc--cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH-------hcC-CCCCcc-----eEEEecCCCCCccc
Q 041459 61 LFLDYGTGS--GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA-------LNN-IGPKKM-----KLHLVPDRTFPASM 125 (225)
Q Consensus 61 ~vlDiGcGt--G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~-------~~~-~~~~~~-----~~~~~~~~~~~~~~ 125 (225)
+|.=+|+|. +.++..++..+. +++++|.+++.++.+++.+. ..+ +..... .+.....
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~------- 76 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTD------- 76 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC-------
Confidence 466778876 244445556654 69999999999877654332 122 110000 0000000
Q ss_pred cccccccccccccccccCCCCCCceeEEEeccchh--HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHH
Q 041459 126 NERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 196 (225)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (225)
.......|+|+...+-. .-..++.++.+.++++.++ .+....-....+.+.+
T Consensus 77 ------------------~~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il-~s~ts~~~~~~la~~~ 130 (282)
T PRK05808 77 ------------------LDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAIL-ATNTSSLSITELAAAT 130 (282)
T ss_pred ------------------HHHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEE-EECCCCCCHHHHHHhh
Confidence 00124579998876533 2357888888889988766 4444444444555444
No 366
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=82.81 E-value=12 Score=32.81 Aligned_cols=44 Identities=27% Similarity=0.538 Sum_probs=31.5
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHH
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~ 99 (225)
+++|.+||=.|+|. |.+++.+++ .|..++++++.++..++.+++
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 55788998888754 444555555 466579999999988877753
No 367
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=82.65 E-value=7.9 Score=32.81 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=52.4
Q ss_pred cEEEEcccc--cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459 61 LFLDYGTGS--GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS 138 (225)
Q Consensus 61 ~vlDiGcGt--G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (225)
+|.=+|+|. |.++..+.+.+ .+|+++|.++..++.+... +.. .....+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~d~~~~~~~~a~~~----g~~----~~~~~~~~------------------- 53 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGVSRRESTCERAIER----GLV----DEASTDLS------------------- 53 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHC----CCc----ccccCCHh-------------------
Confidence 455677775 24444555555 4699999999887776532 211 00000000
Q ss_pred ccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEE
Q 041459 139 HEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVV 179 (225)
Q Consensus 139 ~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l 179 (225)
.....|+|+...|......+++.+...++++.++
T Consensus 54 -------~~~~aDlVilavp~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 54 -------LLKDCDLVILALPIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred -------HhcCCCEEEEcCCHHHHHHHHHHHHHhCCCCcEE
Confidence 1235799999988887778888888888877544
No 368
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=82.65 E-value=14 Score=33.08 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=33.2
Q ss_pred ccCCCcEEEEc-ccc-cHHHHHHHhc---CCCeEEEEeCCHHHHHHHHHH
Q 041459 56 IKGGELFLDYG-TGS-GILGIAAIKF---GAAMSVGVDIDPQAIKSAHQN 100 (225)
Q Consensus 56 ~~~~~~vlDiG-cGt-G~~~~~l~~~---~~~~v~~vDi~~~~l~~a~~~ 100 (225)
++++.+|+=+| +|. |.+++.+++. +..+++++|.++.-++.+++.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 45678888886 453 6667666664 345799999999998888764
No 369
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=82.62 E-value=33 Score=31.04 Aligned_cols=49 Identities=12% Similarity=0.071 Sum_probs=32.5
Q ss_pred ceeEEEeccch----------hHHHHHHHHHHHhccCCeEEEEe-ccCCCcHHHHHHHHH
Q 041459 149 KYDVVIANILL----------NPLLQLADHIVSYAKPGAVVGIS-GILSEQLPHIINRYS 197 (225)
Q Consensus 149 ~~DvIi~~~~~----------~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~~~ 197 (225)
..|+|+.+.+- ......++.+.+.+++|.+++.. +........+...+.
T Consensus 75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~ 134 (415)
T PRK11064 75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLA 134 (415)
T ss_pred cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 57888886554 34566778888999999887764 334445555554444
No 370
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=82.32 E-value=6.2 Score=33.88 Aligned_cols=95 Identities=21% Similarity=0.258 Sum_probs=54.7
Q ss_pred CCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++.+||-.|||. |..++.+++ .|...+++++.++...+.+++. +.. .+.......+ ...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~----~vi~~~~~~~--------~~~--- 225 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD----ETVNLARDPL--------AAY--- 225 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC----EEEcCCchhh--------hhh---
Confidence 678888888764 555555555 4665799999888877755432 221 0110000000 000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
......+|+++..... ...+..+.+.|+++|.++..
T Consensus 226 --------~~~~~~vd~vld~~g~---~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 226 --------AADKGDFDVVFEASGA---PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred --------hccCCCccEEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence 0022358999865432 23456778899999998864
No 371
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=81.84 E-value=29 Score=29.36 Aligned_cols=90 Identities=18% Similarity=0.188 Sum_probs=52.8
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|+=.|+|. |..++.+++ .|.. +++++.+++..+.+++ .+... ...... ..
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~-vi~~~~~~~~~~~~~~----~g~~~----~~~~~~-~~------------ 210 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTGPD-VVLVGRHSEKLALARR----LGVET----VLPDEA-ES------------ 210 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEcCCHHHHHHHHH----cCCcE----EeCccc-cc------------
Confidence 45678888887543 333444444 4555 8999998888877764 23220 110000 00
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
....+|+++....- ...+..+.+.|+++|.++..
T Consensus 211 ------------~~~~~d~vid~~g~---~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 211 ------------EGGGFDVVVEATGS---PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred ------------cCCCCCEEEECCCC---hHHHHHHHHHhhcCCEEEEE
Confidence 34568999864321 23456667788999988763
No 372
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=81.80 E-value=4.5 Score=35.05 Aligned_cols=102 Identities=19% Similarity=0.175 Sum_probs=56.7
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|+=.|+|. |.+++.+++ .|..++++++.++...+.+++ .+.. . +.......+ .+.+...
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~---~-~i~~~~~~~----~~~l~~~- 236 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGAT---I-VLDPTEVDV----VAEVRKL- 236 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---E-EECCCccCH----HHHHHHH-
Confidence 45678888887643 444444554 466579999988888777743 2321 0 111000011 0111111
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.....+|+++-+... ...+..+.+.|+++|.++..+.
T Consensus 237 -----------~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 237 -----------TGGGGVDVSFDCAGV---QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred -----------hCCCCCCEEEECCCC---HHHHHHHHHhccCCCEEEEEcc
Confidence 123459999865432 2345677789999999886543
No 373
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=81.75 E-value=4.7 Score=34.54 Aligned_cols=98 Identities=10% Similarity=0.074 Sum_probs=50.6
Q ss_pred CCCcEEEE--cccc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 58 GGELFLDY--GTGS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 58 ~~~~vlDi--GcGt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.+..++=+ |+|. |.+++.+++....++++++.++...+.+++ .+.. .+.......+. +.+..
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~----~~i~~~~~~~~----~~v~~--- 206 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK----IGAE----YVLNSSDPDFL----EDLKE--- 206 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc----EEEECCCccHH----HHHHH---
Confidence 34455544 4433 555555666433468999999887777754 2322 11111111110 11111
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
......+|+++....-. .+....+.++++|.++...
T Consensus 207 ---------~~~~~~~d~vid~~g~~----~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 207 ---------LIAKLNATIFFDAVGGG----LTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred ---------HhCCCCCcEEEECCCcH----HHHHHHHhhCCCCEEEEEE
Confidence 11334689998643322 2344567789999987744
No 374
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=81.62 E-value=1.9 Score=34.62 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhccCCeEEEEecc
Q 041459 162 LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 162 ~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+...+..+.++|||||.+++.+-
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHHHhhcCCCeeEEEEec
Confidence 45678999999999999988643
No 375
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=80.91 E-value=2.4 Score=35.20 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=44.4
Q ss_pred CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC
Q 041459 59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD 118 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 118 (225)
.+.|+++|.|.|.++..+...+..+...+|+++..+.-.+...+... .++.++..|.
T Consensus 51 ~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~---~~~~IHh~D~ 107 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP---GKLRIHHGDV 107 (326)
T ss_pred cceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC---cceEEecccc
Confidence 46899999999999999999999999999999988877776555333 2345555443
No 376
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=80.85 E-value=11 Score=33.98 Aligned_cols=109 Identities=23% Similarity=0.316 Sum_probs=64.1
Q ss_pred ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHH-------hcCCCCCcceEEEecCCCCCccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAA-------LNNIGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
+.+++...|+|.|-|.+...++. .+...-+|+++.+..-+.|..+.. ..|-.+.. .....+...+. +
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~--~~~i~gsf~~~---~ 264 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNK--IETIHGSFLDP---K 264 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCc--eeecccccCCH---H
Confidence 45788999999999988777555 456667899987776666655443 22222222 22222322221 1
Q ss_pred cccccccccccccccCCCCCCceeEEEeccc-hhH-HHHHHHHHHHhccCCeEEEEec
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANIL-LNP-LLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~-~~~-~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
.... -....++|++|.. +++ +..-+..+..-+++|-.++=+.
T Consensus 265 ~v~e--------------I~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 265 RVTE--------------IQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred HHHH--------------HhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccc
Confidence 1111 1345788888644 443 2222557888889998887543
No 377
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=80.80 E-value=10 Score=30.24 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=24.4
Q ss_pred ceeEEEeccc----------hhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 149 KYDVVIANIL----------LNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 149 ~~DvIi~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
..|+++...+ +..+...++.+.+.++++.++++...
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST 121 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST 121 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE
Confidence 4687777433 23467789999999999988888433
No 378
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=80.63 E-value=11 Score=34.71 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=62.2
Q ss_pred CCCcEEEEcccccH--HHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 58 GGELFLDYGTGSGI--LGIAAI-KFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 58 ~~~~vlDiGcGtG~--~~~~l~-~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
..+.++|+|.|.|. .+...+ +.....++.||.+..|......+... +-.+..+.+.. .... +....
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~~~v~~--~~~~-----r~~~p--- 268 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHIGEPIVRK--LVFH-----RQRLP--- 268 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhcCchhccc--cchh-----cccCC---
Confidence 45788888888663 333322 33467799999999999999888754 21111111111 0000 00000
Q ss_pred ccccccccCCCCCCceeEEEeccchhHH------HH-HHHHHHHhccCCeEEEEeccCC
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPL------LQ-LADHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~------~~-~l~~~~~~LkpgG~l~~~~~~~ 186 (225)
+.....||++++...+.+. .. .-+...+...+|+.+++..-+.
T Consensus 269 ---------i~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 269 ---------IDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred ---------CCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 0034569999997665431 12 2344557788999988865544
No 379
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=80.60 E-value=35 Score=29.05 Aligned_cols=109 Identities=10% Similarity=0.149 Sum_probs=61.4
Q ss_pred cCCCcEEEEcccccHHHHHHHh----c-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIK----F-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDG 131 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~----~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (225)
..+..++|+|+|+..-+..+.. . ...+++.+|++...++...+.+...... +.+...-+ .+. .-+
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~---l~v~~l~~-~~~----~~L-- 146 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG---LEVNALCG-DYE----LAL-- 146 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC---CeEeehhh-hHH----HHH--
Confidence 3578999999999866655432 2 3478999999999888765555422211 22221111 100 000
Q ss_pred cccccccccccCCCCCCceeEEEe-----ccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 132 IVEDLSSHEIRGISETEKYDVVIA-----NILLNPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~DvIi~-----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
......++==+++. |.....-..++.++...+.||.++.+....
T Consensus 147 ----------a~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl 195 (321)
T COG4301 147 ----------AELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDL 195 (321)
T ss_pred ----------hcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 00001111111222 333444566889999999999999885433
No 380
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=80.54 E-value=4.7 Score=34.18 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=28.8
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc------CCCeEEEEeCCH
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF------GAAMSVGVDIDP 91 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~------~~~~v~~vDi~~ 91 (225)
+.+...++|+|||.|.++.+++.. +...++.||...
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 456779999999999999987752 346799999855
No 381
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=80.50 E-value=16 Score=34.73 Aligned_cols=94 Identities=11% Similarity=0.008 Sum_probs=51.9
Q ss_pred CcEEEEcccccHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 60 ELFLDYGTGSGILGIAAIK---FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~~l~~---~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
..|+=+|+| .++..+++ .....++.+|.|++.++.+++ .+ .....+|+... +.+..-
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g-----~~v~~GDat~~-----~~L~~a---- 460 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG-----YKVYYGDATQL-----ELLRAA---- 460 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC-----CeEEEeeCCCH-----HHHHhc----
Confidence 356655555 44444332 223459999999998887753 23 23566665432 111111
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.-++.|.+++...-+.-...+....+.+.|...++..
T Consensus 461 ---------gi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 461 ---------GAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILAR 497 (601)
T ss_pred ---------CCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 3456788777555443333344445556777777653
No 382
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=79.36 E-value=6.3 Score=33.65 Aligned_cols=99 Identities=21% Similarity=0.286 Sum_probs=55.9
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
..++.+|+-.|+|. |..++.+++ .|...+++++.++...+.+++. +.. .........+. .. ..
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~----~~~~~~~~~~~----~~-~~-- 221 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT----ETVDPSREDPE----AQ-KE-- 221 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe----EEecCCCCCHH----HH-HH--
Confidence 44678999988653 455555555 4555588999888877766432 221 11111110000 00 00
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
.....+|+++.+... ...+..+.+.|+++|.++..+
T Consensus 222 -----------~~~~~vd~v~~~~~~---~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 222 -----------DNPYGFDVVIEATGV---PKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred -----------hcCCCCcEEEECCCC---hHHHHHHHHHHhcCCEEEEEe
Confidence 034569999865322 245666778889999987643
No 383
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=79.03 E-value=5.6 Score=30.11 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=27.6
Q ss_pred EEccccc--HHHHHHH---hcCCCeEEEEeCCHHHHHHHHHH--HHhcCC
Q 041459 64 DYGTGSG--ILGIAAI---KFGAAMSVGVDIDPQAIKSAHQN--AALNNI 106 (225)
Q Consensus 64 DiGcGtG--~~~~~l~---~~~~~~v~~vDi~~~~l~~a~~~--~~~~~~ 106 (225)
|+|++.| .....+. ..+..+++++|.+|...+..+++ +..+..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~ 50 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDK 50 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCC
Confidence 8999999 5555443 23567899999999999999988 655543
No 384
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=78.92 E-value=29 Score=30.99 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=31.6
Q ss_pred CCCcEEEEcccccHH----HHHHHhc----CCCeEEEEeC----CHHHHHHHHHHHH
Q 041459 58 GGELFLDYGTGSGIL----GIAAIKF----GAAMSVGVDI----DPQAIKSAHQNAA 102 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~----~~~l~~~----~~~~v~~vDi----~~~~l~~a~~~~~ 102 (225)
+...|+|+|.|.|.- ...++.. +.-++||++. +...++.+.+++.
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~ 166 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLA 166 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHH
Confidence 345889999999943 2234443 2357999999 7888888777764
No 385
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=78.44 E-value=27 Score=33.38 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=52.3
Q ss_pred CcEEEEcccc-cHHHHH-HHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 60 ELFLDYGTGS-GILGIA-AIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 60 ~~vlDiGcGt-G~~~~~-l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
..|+=+|||. |..... +.+.+ ..++.+|.|++.++.+++ .+ .....+|+... +.+..-
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~----~g-----~~v~~GDat~~-----~~L~~a----- 460 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSG-VKMTVLDHDPDHIETLRK----FG-----MKVFYGDATRM-----DLLESA----- 460 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHh----cC-----CeEEEEeCCCH-----HHHHhc-----
Confidence 5677777776 443332 33344 459999999998888764 23 23566665443 111111
Q ss_pred cccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459 138 SHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
.-++.|.+++...-+.....+....+.+.|+-.++.
T Consensus 461 --------gi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 461 --------GAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred --------CCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 345678777755443333333334444556655554
No 386
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=78.18 E-value=8 Score=33.96 Aligned_cols=98 Identities=11% Similarity=0.092 Sum_probs=52.1
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.+++++|+-.|+|. |.+++.+++....++++++.++.....+.+ ..+.. .... .... +..
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~---~~Ga~----~vi~--~~~~-----~~~----- 241 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAIN---RLGAD----SFLV--STDP-----EKM----- 241 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHH---hCCCc----EEEc--CCCH-----HHH-----
Confidence 34678888888865 566666666433458888877644322211 22321 0110 0000 000
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.. ..+.+|+++-...- ...+..+.+.|+++|.++..+.
T Consensus 242 -------~~--~~~~~D~vid~~g~---~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 242 -------KA--AIGTMDYIIDTVSA---VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred -------Hh--hcCCCCEEEECCCC---HHHHHHHHHHhcCCcEEEEeCC
Confidence 00 11248988854321 2246677889999999887543
No 387
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=77.96 E-value=6.3 Score=33.85 Aligned_cols=101 Identities=25% Similarity=0.276 Sum_probs=56.1
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
+.++.+||-.|+|. |..++.+++.-..+++++..+++..+.+++. +.. .+.......+. +.+.
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~----~v~~~~~~~~~----~~l~---- 220 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GAD----DTINVGDEDVA----ARLR---- 220 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCC----EEecCcccCHH----HHHH----
Confidence 45788999988764 5566666665345688887787777666432 211 11111111110 0000
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
.......+|+++.+..- ...+..+.+.|+++|.++..+
T Consensus 221 --------~~~~~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 221 --------ELTDGEGADVVIDATGN---PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred --------HHhCCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEc
Confidence 11134458999864321 234667788899999987543
No 388
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=77.69 E-value=3.7 Score=37.68 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=28.8
Q ss_pred CceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 148 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 148 ~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
...|+|++-.|......+.+++...||||..++++
T Consensus 96 ~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 96 PQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred HhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEec
Confidence 46899998877765556668899999999999985
No 389
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=77.69 E-value=6.6 Score=34.07 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=35.6
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
.|.+|.-+|+|-..+..++++.++ +|.+||+++..|...+-++.
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~Pa-~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRAPA-RIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcCCc-eeEEEeCCHHHHHHHHHHHH
Confidence 578999999987777777888765 59999999999988765554
No 390
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=77.59 E-value=16 Score=30.61 Aligned_cols=101 Identities=22% Similarity=0.218 Sum_probs=52.2
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|+=.|+|. |..+..+++ .|...++++.-++...+.+++ .+.. .+.......+. +.+
T Consensus 127 ~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~----~~l---- 190 (312)
T cd08269 127 IRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARE----LGAT----EVVTDDSEAIV----ERV---- 190 (312)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc----eEecCCCcCHH----HHH----
Confidence 45677887776532 333444444 455548888877766654432 2321 11111111110 000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
........+|+++.+... ...+....+.|+++|.++..+
T Consensus 191 --------~~~~~~~~vd~vld~~g~---~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 191 --------RELTGGAGADVVIEAVGH---QWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred --------HHHcCCCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEEc
Confidence 011134568999864322 234566778899999988643
No 391
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=77.32 E-value=6.3 Score=34.42 Aligned_cols=100 Identities=22% Similarity=0.256 Sum_probs=56.5
Q ss_pred ccCCCcEEEEcccc--cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGTGS--GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcGt--G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
+++|++||=.|+.. |.+++.+++ .|. .++++-.+++-.+.+++.-...- +. .....+. +...
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~v-------i~-y~~~~~~----~~v~-- 204 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHV-------IN-YREEDFV----EQVR-- 204 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEE-------Ec-CCcccHH----HHHH--
Confidence 45789999988555 577777776 455 56666666665555543322111 11 1111110 1111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.......+|+|+....- ..+....+.|+++|.++....
T Consensus 205 ----------~~t~g~gvDvv~D~vG~----~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 205 ----------ELTGGKGVDVVLDTVGG----DTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred ----------HHcCCCCceEEEECCCH----HHHHHHHHHhccCCEEEEEec
Confidence 11234579999864332 344556778899999887544
No 392
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=77.15 E-value=11 Score=32.94 Aligned_cols=100 Identities=17% Similarity=0.269 Sum_probs=56.8
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|+-.|+|. |..++.+++ .|...++++|.++...+.++. .+.. .+.......+. +.+
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~----~~i~~~~~~~~----~~v---- 247 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT----HVINPKEEDLV----AAI---- 247 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc----EEecCCCcCHH----HHH----
Confidence 44678888887654 455555555 576679999999877766643 2221 11111111110 000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
... ....+|+++..... ...+..+.+.++++|.++..+
T Consensus 248 --------~~~-~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 248 --------REI-TGGGVDYALDTTGV---PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred --------HHH-hCCCCcEEEECCCC---cHHHHHHHHHhccCCEEEEeC
Confidence 011 13458999864322 234667788899999988754
No 393
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=76.56 E-value=9.3 Score=32.96 Aligned_cols=104 Identities=27% Similarity=0.392 Sum_probs=55.8
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|+-.|+|. |..++.+++ .|...+++++-++...+.+++. +.. .+.......+. ++.+.+
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~----~vi~~~~~~~~-~~~~~~---- 226 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GAT----HTVNVRTEDTP-ESAEKI---- 226 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc----EEeccccccch-hHHHHH----
Confidence 45788888877654 455555565 4655588898888776666431 221 01111100000 000000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
........+|+|+.+.... ..+....+.|+++|.++..+
T Consensus 227 --------~~~~~~~~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 227 --------AELLGGKGPDVVIECTGAE---SCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred --------HHHhCCCCCCEEEECCCCH---HHHHHHHHHhhcCCEEEEEc
Confidence 0111345699998643322 24667788999999988643
No 394
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=76.45 E-value=31 Score=29.90 Aligned_cols=48 Identities=19% Similarity=0.126 Sum_probs=31.4
Q ss_pred CceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHH
Q 041459 148 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINR 195 (225)
Q Consensus 148 ~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 195 (225)
..+|+|+...+.......++.+...++++.+++....+-.....+.+.
T Consensus 72 ~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~ 119 (341)
T PRK08229 72 ATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRAA 119 (341)
T ss_pred cCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHh
Confidence 468999987766666777888888888887665443433333444443
No 395
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=76.03 E-value=31 Score=29.28 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=60.4
Q ss_pred cEEEEccccc--HHHHHHHhcC---CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 61 LFLDYGTGSG--ILGIAAIKFG---AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 61 ~vlDiGcGtG--~~~~~l~~~~---~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+|.=+|||.= .++..+.+.+ ..++++.|.++..++.+.+. .+.. .. .+...
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~---~g~~-----~~-~~~~e--------------- 59 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK---YGIT-----IT-TNNNE--------------- 59 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh---cCcE-----Ee-CCcHH---------------
Confidence 5777888872 2333344444 34699999988776554432 2211 11 01000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHH
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 196 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (225)
.....|+|+...+......+++.+...++++ .++++..-.-....+.+.+
T Consensus 60 ----------~~~~aDiIiLavkP~~~~~vl~~l~~~~~~~-~lvISi~AGi~i~~l~~~l 109 (272)
T PRK12491 60 ----------VANSADILILSIKPDLYSSVINQIKDQIKND-VIVVTIAAGKSIKSTENEF 109 (272)
T ss_pred ----------HHhhCCEEEEEeChHHHHHHHHHHHHhhcCC-cEEEEeCCCCcHHHHHHhc
Confidence 1134699988777777888888888877765 5666655555666666554
No 396
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=75.87 E-value=6.2 Score=34.87 Aligned_cols=103 Identities=16% Similarity=0.165 Sum_probs=55.7
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC--CCCCccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD--RTFPASMNERVDG 131 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 131 (225)
++.+.+|+=.|+|. |..++.+++ .|...+++++.++...+.+++ .+.. .+ +...+. ..+. +.+
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~--~~-v~~~~~~~~~~~----~~v-- 267 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGAD--YV-FNPTKMRDCLSG----EKV-- 267 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC--EE-EcccccccccHH----HHH--
Confidence 45677887777654 444444554 466579999988876555543 2322 01 111000 0110 111
Q ss_pred cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
..+.....+|+|+.... .....+..+.+.|+++|.++..+
T Consensus 268 ----------~~~~~g~gvDvvld~~g--~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 268 ----------MEVTKGWGADIQVEAAG--APPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred ----------HHhcCCCCCCEEEECCC--CcHHHHHHHHHHHHcCCEEEEEC
Confidence 11113456999986432 12345667788899999988643
No 397
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.69 E-value=22 Score=31.07 Aligned_cols=97 Identities=22% Similarity=0.218 Sum_probs=54.1
Q ss_pred CcEEEEccccc--HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh-------cCCCCCcceEEEecCCCCCcccccccc
Q 041459 60 ELFLDYGTGSG--ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL-------NNIGPKKMKLHLVPDRTFPASMNERVD 130 (225)
Q Consensus 60 ~~vlDiGcGtG--~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
.+|.=+|+|+= .++..++..| .+|+..|.+++.++.++..+.. .+.... .. .
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG-~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------~~---------~ 68 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG-LDVVAWDPAPGAEAALRANVANAWPALERQGLAPG---------AS---------P 68 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChh---------hH---------H
Confidence 46778888863 3334455555 4599999999988876654431 111100 00 0
Q ss_pred ccccccccccccCCC-CCCceeEEEeccchh--HHHHHHHHHHHhccCCeEEE
Q 041459 131 GIVEDLSSHEIRGIS-ETEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 131 ~~~~~~~~~~~~~~~-~~~~~DvIi~~~~~~--~~~~~l~~~~~~LkpgG~l~ 180 (225)
..|.... .+. .-...|+|+-+.+-. --..++..+-+.++|+.++.
T Consensus 69 ~~i~~~~-----~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 69 ARLRFVA-----TIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred hhceecC-----CHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 0000000 000 124579998876643 34567788888889887443
No 398
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=75.49 E-value=20 Score=32.37 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=31.6
Q ss_pred ceeEEEeccc----------hhHHHHHHHHHHHhccCCeEEEEe-ccCCCcHHHHHHHHH
Q 041459 149 KYDVVIANIL----------LNPLLQLADHIVSYAKPGAVVGIS-GILSEQLPHIINRYS 197 (225)
Q Consensus 149 ~~DvIi~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~~~ 197 (225)
..|+++...| +.......+.+.+.|++|-.+++. +......+++..-+.
T Consensus 84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~pll 143 (436)
T COG0677 84 ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLL 143 (436)
T ss_pred cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHH
Confidence 6787666433 233567788899999999999984 333444444444433
No 399
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=75.09 E-value=32 Score=25.89 Aligned_cols=83 Identities=18% Similarity=0.174 Sum_probs=43.1
Q ss_pred cEEEEccccc---HHHHHHHhcCCCeEEEEeCC--HHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 61 LFLDYGTGSG---ILGIAAIKFGAAMSVGVDID--PQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 61 ~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++|=.|+++| .++..+++.+...++.+..+ ....+.....+...+ .++.....|.... +.....++.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~---~~~~~~~~D~~~~-----~~~~~~~~~ 73 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG---AKITFIECDLSDP-----ESIRALIEE 73 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT---SEEEEEESETTSH-----HHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc---ccccccccccccc-----ccccccccc
Confidence 4566666655 33344556677788999988 555555544444333 2344444333221 122222211
Q ss_pred cccccccCCCCCCceeEEEeccc
Q 041459 136 LSSHEIRGISETEKYDVVIANIL 158 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~ 158 (225)
.. .....+|+++.|..
T Consensus 74 ~~-------~~~~~ld~li~~ag 89 (167)
T PF00106_consen 74 VI-------KRFGPLDILINNAG 89 (167)
T ss_dssp HH-------HHHSSESEEEEECS
T ss_pred cc-------cccccccccccccc
Confidence 10 03567999998644
No 400
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.95 E-value=21 Score=30.62 Aligned_cols=101 Identities=19% Similarity=0.297 Sum_probs=54.5
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
.+.+.+|+=.|+|. |..++.+++ .|...+++++.++...+.+++ .+.. .+.......+. +.
T Consensus 166 ~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~----~v~~~~~~~~~----~~----- 228 (345)
T cd08287 166 VRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGAT----DIVAERGEEAV----AR----- 228 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc----eEecCCcccHH----HH-----
Confidence 44567776677654 445555555 466669999988765555543 2321 01111110100 00
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+........+|+++....- ...+..+.+.++++|.++..+
T Consensus 229 -------i~~~~~~~~~d~il~~~g~---~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 229 -------VRELTGGVGADAVLECVGT---QESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred -------HHHhcCCCCCCEEEECCCC---HHHHHHHHHhhccCCEEEEec
Confidence 0111134468998853211 235677788899999988754
No 401
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=74.93 E-value=22 Score=30.20 Aligned_cols=124 Identities=10% Similarity=0.089 Sum_probs=61.0
Q ss_pred CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCcceEEEecCCCCCccccccccccccc
Q 041459 60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.+|.=+|+|+ | .++..++..|. +|+.+|.+++.++.+++.+... ++.. .+ ....... .+. +.....+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~-~~--~~g~~~~--~~~-~~~~~~i~~ 76 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRN-LV--EKGKMSE--DEA-KAIMARIRT 76 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHH-HH--HcCCCCH--HHH-HHHHhCcEe
Confidence 3577788886 3 33444555654 6999999999998876654321 1100 00 0000000 000 000000000
Q ss_pred cccccccCCCCCCceeEEEeccchhH--HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHH
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP--LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 196 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (225)
.. ........|+|+...+-.. ...++.++.+.++++.++ .+....-...++.+.+
T Consensus 77 ~~-----~~~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il-~S~tsg~~~~~la~~~ 133 (291)
T PRK06035 77 ST-----SYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETII-ASNTSGIMIAEIATAL 133 (291)
T ss_pred eC-----CHHHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEE-EEcCCCCCHHHHHhhc
Confidence 00 0001234798888765443 566788888888888655 4444333444444443
No 402
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=74.79 E-value=9.2 Score=32.95 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=57.5
Q ss_pred ccCCCcEEEEcc--cccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGc--GtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|.+||=.|+ |.|.+++.+++....++++++.++...+.+++. .+... + +...+...+. +.+
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~---lGa~~--v-i~~~~~~~~~----~~i---- 214 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNK---LGFDD--A-FNYKEEPDLD----AAL---- 214 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCce--e-EEcCCcccHH----HHH----
Confidence 567889998886 236666666664334588888888777766542 23221 0 1111110110 000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
... ....+|+++-... ...+..+.+.|+++|.++..+
T Consensus 215 --------~~~-~~~gvd~v~d~~g----~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 215 --------KRY-FPNGIDIYFDNVG----GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred --------HHh-CCCCcEEEEECCC----HHHHHHHHHHhccCcEEEEec
Confidence 111 1246899986432 145667888999999988643
No 403
>PRK08507 prephenate dehydrogenase; Validated
Probab=74.67 E-value=20 Score=30.16 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=51.2
Q ss_pred cEEEEcccc--cHHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 61 LFLDYGTGS--GILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 61 ~vlDiGcGt--G~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
+|.=+|+|. |.++..+.+.+. ..+++.|.++..++.+++ .+.. + . ..+..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g~~-~---~-~~~~~------------------ 54 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LGLV-D---E-IVSFE------------------ 54 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CCCC-c---c-cCCHH------------------
Confidence 355677765 234444555554 469999999987766542 2321 0 0 00000
Q ss_pred cccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEE
Q 041459 138 SHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~ 180 (225)
.....|+|+...|.......+..+.. ++++.+++
T Consensus 55 --------~~~~aD~Vilavp~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 55 --------ELKKCDVIFLAIPVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred --------HHhcCCEEEEeCcHHHHHHHHHHHhc-cCCCCEEE
Confidence 01127999998888888888888887 88876554
No 404
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=74.34 E-value=52 Score=27.74 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=57.7
Q ss_pred CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCcceEEEecCCCCCccccccccccccccc
Q 041459 59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG-PKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
...|+.+|||-=+....+......+++=+|. |++++.-++.+...+.. ....+....+.. .++.+.+..
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~---~~w~~~L~~------ 151 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLR---QDWPAALAA------ 151 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCch---hhHHHHHHh------
Confidence 3579999999877666553222234555554 44666666666554432 122333322221 111111100
Q ss_pred cccccCCCCCCceeEEEeccch-----hHHHHHHHHHHHhccCCeEEEEecc
Q 041459 138 SHEIRGISETEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
..+ ....--++++...+ .....++..+.+...||+.+++..+
T Consensus 152 ----~gf-d~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 152 ----AGF-DPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred ----CCC-CCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 011 22334455554333 2355678888888889999988544
No 405
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=74.06 E-value=13 Score=32.26 Aligned_cols=103 Identities=21% Similarity=0.253 Sum_probs=54.8
Q ss_pred cCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 57 KGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 57 ~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.++.+||=.|+|. |..++.+++ .|..++++++.++...+.+++ .+... +......... +....
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~----vi~~~~~~~~----~~~~~--- 240 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADA----TIDIDELPDP----QRRAI--- 240 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCe----EEcCcccccH----HHHHH---
Confidence 3677888887653 444455555 466579999988876665542 23220 1111100000 00000
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+........+|+++..... ...+....+.++++|.++..+
T Consensus 241 ------i~~~~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 241 ------VRDITGGRGADVVIEASGH---PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred ------HHHHhCCCCCcEEEECCCC---hHHHHHHHHHhccCCEEEEEc
Confidence 0011134569999864322 234567778999999988654
No 406
>PRK10083 putative oxidoreductase; Provisional
Probab=73.99 E-value=16 Score=31.23 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=31.5
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh--cCCCeEEEEeCCHHHHHHHHH
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK--FGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~--~~~~~v~~vDi~~~~l~~a~~ 99 (225)
++++.+|+=.|+|. |..++.+++ .|...++++|.++...+.+++
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~ 204 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE 204 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 45688888888654 444555555 377779999998888777754
No 407
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=73.89 E-value=23 Score=30.17 Aligned_cols=53 Identities=15% Similarity=0.146 Sum_probs=29.7
Q ss_pred CCCceeEEEeccch--------------hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 146 ETEKYDVVIANILL--------------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 146 ~~~~~DvIi~~~~~--------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
.+.++|+||++..- ..+..+..-+..-|+-||.+.+......-..++-+.++.
T Consensus 118 ~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~~~ 184 (299)
T PF06460_consen 118 PPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELMGY 184 (299)
T ss_dssp ESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHHTT
T ss_pred CCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHHhh
Confidence 57889999997651 112334455667899999999864434344566555554
No 408
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=73.77 E-value=26 Score=30.05 Aligned_cols=95 Identities=15% Similarity=0.159 Sum_probs=54.5
Q ss_pred CcEEEEcc--cccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 60 ELFLDYGT--GSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 60 ~~vlDiGc--GtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
++||=.|+ |.|..++.+++ .|..++++++.+++..+.+++. .+.. .+.......+. +.+.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~----~vi~~~~~~~~----~~i~------ 218 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD----AAINYKTDNVA----ERLR------ 218 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc----EEEECCCCCHH----HHHH------
Confidence 78888886 34666676666 4655799999888776666542 2322 11111111110 1111
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.. ....+|+++....-. .+..+.+.|+++|.++..
T Consensus 219 ------~~-~~~gvd~vid~~g~~----~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 219 ------EL-CPEGVDVYFDNVGGE----ISDTVISQMNENSHIILC 253 (345)
T ss_pred ------HH-CCCCceEEEECCCcH----HHHHHHHHhccCCEEEEE
Confidence 11 125699998643322 246778899999998864
No 409
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=73.04 E-value=8.4 Score=30.56 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=51.8
Q ss_pred EEEEccccc--HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCcceEEEecCCCCCcccccccccccccc
Q 041459 62 FLDYGTGSG--ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN---IGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 62 vlDiGcGtG--~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
|.=+|+|+= .++..++..| .+|+.+|.+++.++.+++.+...- .....+.-. .. +.....|...
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~---------~~-~~~~~~i~~~ 70 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAG-YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQE---------EA-DAALARISFT 70 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHH---------HH-HHHHHTEEEE
T ss_pred EEEEcCCHHHHHHHHHHHhCC-CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhh---------hh-hhhhhhcccc
Confidence 555788773 3344455555 569999999999999887765310 000000000 00 0000000000
Q ss_pred ccccccCCCCCCceeEEEeccc--hhHHHHHHHHHHHhccCCeEEEE
Q 041459 137 SSHEIRGISETEKYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~--~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
..+......|+|+-+.+ ++--.+++.++-+.+.|+.++.-
T Consensus 71 -----~dl~~~~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilas 112 (180)
T PF02737_consen 71 -----TDLEEAVDADLVIEAIPEDLELKQELFAELDEICPPDTILAS 112 (180)
T ss_dssp -----SSGGGGCTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE
T ss_pred -----cCHHHHhhhheehhhccccHHHHHHHHHHHHHHhCCCceEEe
Confidence 00012236899987654 23346788888888888877654
No 410
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=72.67 E-value=13 Score=32.01 Aligned_cols=101 Identities=22% Similarity=0.256 Sum_probs=55.3
Q ss_pred cCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 57 KGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 57 ~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.++.+|+-.|+|. |..++.+++ .|...+++++.++...+.+++ .+.+ .+.......+. +.
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~~----~~~~~~~~~~~----~~------ 223 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK----MGAT----RAVNVAKEDLR----DV------ 223 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc----EEecCccccHH----HH------
Confidence 3577777777654 455555555 566578888888877666543 2221 01111111110 00
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+........+|+++..... ...+..+.+.|+++|.++..+.
T Consensus 224 ------~~~~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 224 ------MAELGMTEGFDVGLEMSGA---PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred ------HHHhcCCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEec
Confidence 1111134568999864322 2345667789999999887544
No 411
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.46 E-value=50 Score=28.02 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=54.4
Q ss_pred CcEEEEcccccH--HHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc-------CC-CCCc-----ceEEEecCCCCCcc
Q 041459 60 ELFLDYGTGSGI--LGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN-------NI-GPKK-----MKLHLVPDRTFPAS 124 (225)
Q Consensus 60 ~~vlDiGcGtG~--~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~-------~~-~~~~-----~~~~~~~~~~~~~~ 124 (225)
.+|.=+|+|+-. ++..++..|. +|+..|.+++.++.+...+..+ +. .... -.+...+ ..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~--~~--- 78 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTAT--DL--- 78 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC--CH---
Confidence 457778888743 3334555554 5999999999988765543321 11 0000 0001000 00
Q ss_pred ccccccccccccccccccCCCCCCceeEEEeccch--hHHHHHHHHHHHhccCCeEEE
Q 041459 125 MNERVDGIVEDLSSHEIRGISETEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~--~~~~~~l~~~~~~LkpgG~l~ 180 (225)
......|+|+...+- .....++..+...++++.+++
T Consensus 79 --------------------~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 79 --------------------EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred --------------------HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 012357988887654 334567788888899987665
No 412
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=72.44 E-value=9.1 Score=32.95 Aligned_cols=101 Identities=18% Similarity=0.282 Sum_probs=54.2
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+.++.+||=.|+|. |..++.+++ .|..++++++.++.....+++ .+.+ ..+... . ..+. ..+
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~-~~v~~~--~-~~~~----~~i---- 227 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGAT-HTVNSA--K-GDAI----EQV---- 227 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCC-ceeccc--c-ccHH----HHH----
Confidence 44677777677643 344444555 464678889988877665543 2321 001110 0 0000 000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
........+|+++....- ...+..+.+.|+++|.++..+
T Consensus 228 --------~~~~~~~~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 228 --------LELTDGRGVDVVIEAVGI---PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred --------HHHhCCCCCCEEEECCCC---HHHHHHHHHhccCCcEEEEec
Confidence 011134469999865421 234677778999999988643
No 413
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=72.06 E-value=24 Score=30.81 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=55.0
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+.++.+||=.|+|. |..+..+++ .|...+++++.++...+.+++ .+.. ..+.....+. .+ .+.+..
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~-~~v~~~~~~~-~~----~~~l~~-- 248 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGAT-ECINPRDQDK-PI----VEVLTE-- 248 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCC-eecccccccc-hH----HHHHHH--
Confidence 45678888887654 444444554 466678999988887777643 2221 0011100000 00 000001
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhcc-CCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAK-PGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~ 183 (225)
. ..+.+|+++..... ...+....+.|+ ++|.++..+
T Consensus 249 ----------~-~~~~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 249 ----------M-TDGGVDYAFEVIGS---ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred ----------H-hCCCCcEEEECCCC---HHHHHHHHHHhccCCCEEEEEe
Confidence 1 12468999864321 235667778888 999988643
No 414
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=71.91 E-value=18 Score=27.84 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=56.7
Q ss_pred EEEEcccccHHHHH--HHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccc
Q 041459 62 FLDYGTGSGILGIA--AIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSH 139 (225)
Q Consensus 62 vlDiGcGtG~~~~~--l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (225)
|.=+|+|.+..++. ++.++ .+|+....+++.++..+++-. +......+.+.. .-... .+...
T Consensus 2 I~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~-n~~~~~~~~l~~--~i~~t----~dl~~-------- 65 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQ-NPKYLPGIKLPE--NIKAT----TDLEE-------- 65 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTS-ETTTSTTSBEET--TEEEE----SSHHH--------
T ss_pred EEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCC-CCCCCCCcccCc--ccccc----cCHHH--------
Confidence 55678888766554 45565 669999999987777665432 111101111110 00000 00000
Q ss_pred cccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 140 EIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 140 ~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.-...|+|+...|-..++.+++.+..+++++-.++..
T Consensus 66 ------a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 66 ------ALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp ------HHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred ------HhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEEe
Confidence 1234699999888888899999999999888777763
No 415
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=71.43 E-value=35 Score=28.95 Aligned_cols=91 Identities=18% Similarity=0.178 Sum_probs=52.0
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
++++.+++=.|||. |..+..+++....++++++-++...+.+++ .+.. ... +....
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~-----~~~-~~~~~------------- 221 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGAD-----WAG-DSDDL------------- 221 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCc-----EEe-ccCcc-------------
Confidence 44677777777653 334444555433578888888766655532 2321 111 00000
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
....+|+++..... ...++.+.+.|+++|.++..+
T Consensus 222 -----------~~~~vD~vi~~~~~---~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 222 -----------PPEPLDAAIIFAPV---GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred -----------CCCcccEEEEcCCc---HHHHHHHHHHhhcCCEEEEEc
Confidence 22357887753222 245778889999999988754
No 416
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=71.40 E-value=15 Score=32.12 Aligned_cols=100 Identities=16% Similarity=0.239 Sum_probs=55.2
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+.++.+||-.|+|. |..++.+++ .|...+++++.++...+.++. .+.. .+.......+. ..+
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~----~vv~~~~~~~~----~~l---- 243 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGAT----HTVNASEDDAV----EAV---- 243 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCe----EEeCCCCccHH----HHH----
Confidence 45678888887653 555555555 465568999888877665532 2221 11111000110 000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
........+|+++....- ...+..+.+.|+++|.++..
T Consensus 244 --------~~~~~~~~vd~vld~~~~---~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 244 --------RDLTDGRGADYAFEAVGR---AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred --------HHHcCCCCCCEEEEcCCC---hHHHHHHHHHhhcCCeEEEE
Confidence 111134568999864332 23466778889999998764
No 417
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=71.01 E-value=31 Score=29.35 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=54.2
Q ss_pred ccCCCcEEEEccc-ccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTG-SGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcG-tG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
..++.+|+-.|+| .|..+..+++....++++++.++..++.+++ .+.. . .........
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~~--~--~~~~~~~~~------------- 218 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK----LGAD--E--VVDSGAELD------------- 218 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----hCCc--E--EeccCCcch-------------
Confidence 4567888888876 3555555555433468999988887776643 1211 0 110000000
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
.+. ....+|+++....- ...+..+.+.|+++|.++..+
T Consensus 219 ------~~~--~~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 219 ------EQA--AAGGADVILVTVVS---GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ------HHh--ccCCCCEEEECCCc---HHHHHHHHHhcccCCEEEEEC
Confidence 000 12358988864321 234567788999999988643
No 418
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=70.94 E-value=14 Score=31.87 Aligned_cols=97 Identities=21% Similarity=0.228 Sum_probs=53.7
Q ss_pred CCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++.+|+-.|+|. |..+..+++ .|...+++++.++...+.+++ .+.. .+.......+ .+.+..
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~----~~~~~~---- 238 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD----VVVNGSDPDA----AKRIIK---- 238 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc----EEecCCCccH----HHHHHH----
Confidence 577888887653 444445555 466679999988877766643 2321 1111110000 000000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.... .+|+++..... ...+..+.+.|+++|.++..
T Consensus 239 --------~~~~-~~d~vid~~g~---~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 239 --------AAGG-GVDAVIDFVNN---SATASLAFDILAKGGKLVLV 273 (350)
T ss_pred --------HhCC-CCcEEEECCCC---HHHHHHHHHHhhcCCeEEEE
Confidence 0022 68999864432 23467778899999998764
No 419
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.76 E-value=44 Score=28.31 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=27.6
Q ss_pred cEEEEccccc--HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 61 LFLDYGTGSG--ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 61 ~vlDiGcGtG--~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
+|.=+|+|.= .++..+++.+. +|+..|.+++.++.+....
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~ 44 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEI 44 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHH
Confidence 4667788762 33344555554 5999999999998876543
No 420
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=70.22 E-value=8.7 Score=27.66 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=30.4
Q ss_pred ceeEEEeccchhH-----------------HHHHHHHHHHhccCCeEEEEe---ccC--CCcHHHHHHHHH
Q 041459 149 KYDVVIANILLNP-----------------LLQLADHIVSYAKPGAVVGIS---GIL--SEQLPHIINRYS 197 (225)
Q Consensus 149 ~~DvIi~~~~~~~-----------------~~~~l~~~~~~LkpgG~l~~~---~~~--~~~~~~~~~~~~ 197 (225)
+||+|+-|||+.. +..+++...++| +|.+.+- .+. ......+++.+.
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~ 70 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLL 70 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHh
Confidence 5899999999732 234677777887 8887653 223 344555665554
No 421
>PLN02256 arogenate dehydrogenase
Probab=70.13 E-value=40 Score=29.14 Aligned_cols=86 Identities=15% Similarity=0.098 Sum_probs=48.9
Q ss_pred CCCcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.+.+|.=+|+|. | .++..+.+.| .+++++|.++. .+.++ ..+.. . ..+....
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G-~~V~~~d~~~~-~~~a~----~~gv~-----~-~~~~~e~-------------- 88 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQG-HTVLATSRSDY-SDIAA----ELGVS-----F-FRDPDDF-------------- 88 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEECccH-HHHHH----HcCCe-----e-eCCHHHH--------------
Confidence 456888898875 2 3444444454 46999998863 22222 22321 1 1110000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHH-HHhccCCeEE
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHI-VSYAKPGAVV 179 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~-~~~LkpgG~l 179 (225)
.....|+|+...+......++..+ ...++++.++
T Consensus 89 ----------~~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iv 123 (304)
T PLN02256 89 ----------CEEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLF 123 (304)
T ss_pred ----------hhCCCCEEEEecCHHHHHHHHHhhhhhccCCCCEE
Confidence 112469999888777777778777 5667787533
No 422
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=69.46 E-value=14 Score=32.26 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=53.8
Q ss_pred cCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 57 KGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 57 ~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.++.+|+-.|+|. |..+..+++ .|...+++++.++...+.+++ .+.. .+.......+. +.+.
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~----~v~~~~~~~~~----~~l~---- 249 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT----HTVNAAKEDAV----AAIR---- 249 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc----eEecCCcccHH----HHHH----
Confidence 4677787666542 444444554 465558999888877766643 2221 01111111110 0000
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
.......+|+|+....-. ..+..+.+.|+++|.++..+
T Consensus 250 --------~~~~~~~~d~vld~vg~~---~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 250 --------EITGGRGVDVVVEALGKP---ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred --------HHhCCCCCCEEEEeCCCH---HHHHHHHHHHhcCCEEEEEc
Confidence 011345699998643322 25667788999999987643
No 423
>PTZ00357 methyltransferase; Provisional
Probab=69.26 E-value=14 Score=35.97 Aligned_cols=107 Identities=13% Similarity=0.160 Sum_probs=56.5
Q ss_pred cEEEEcccccHHHHH---HHh-cCC-CeEEEEeCCHHHHHHHHHHHH-hcCCC------CCcceEEEecCCCCCcccccc
Q 041459 61 LFLDYGTGSGILGIA---AIK-FGA-AMSVGVDIDPQAIKSAHQNAA-LNNIG------PKKMKLHLVPDRTFPASMNER 128 (225)
Q Consensus 61 ~vlDiGcGtG~~~~~---l~~-~~~-~~v~~vDi~~~~l~~a~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~ 128 (225)
.|+=+|+|-|-+... +++ .+. -++++||.++.++...+.+.. ...+. .+.+++...|...+.....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~-- 780 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAE-- 780 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccc--
Confidence 589999999966443 232 332 469999999775545444321 12232 1346676666655421000
Q ss_pred ccccccccccccccCCCCCCceeEEEeccc--hhH---HHHHHHHHHHhccC----CeE
Q 041459 129 VDGIVEDLSSHEIRGISETEKYDVVIANIL--LNP---LLQLADHIVSYAKP----GAV 178 (225)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~--~~~---~~~~l~~~~~~Lkp----gG~ 178 (225)
...+. .-..-+++|+|++... +.+ -.+.+..+.+.||+ +|+
T Consensus 781 -~~s~~--------~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 781 -NGSLT--------LPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred -ccccc--------ccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 00000 0001247999998432 211 13456666677776 665
No 424
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.07 E-value=50 Score=27.99 Aligned_cols=41 Identities=17% Similarity=0.059 Sum_probs=28.8
Q ss_pred CcEEEEcccccHH--HHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 60 ELFLDYGTGSGIL--GIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 60 ~~vlDiGcGtG~~--~~~l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
.+|.=+|+|+-.. +..++..| .+|+.+|.+++.++.++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG-FDVTIYDISDEALEKAKERI 46 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHH
Confidence 3577788887433 33445555 46999999999998887664
No 425
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=69.06 E-value=16 Score=31.42 Aligned_cols=102 Identities=20% Similarity=0.212 Sum_probs=54.0
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
..++.+|+-.|+|. |..++.+++ .|...+++++.++...+.++. .+.. .+.......+. +.+
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~v~~~~~~~~----~~l---- 222 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKK----MGAT----YVVNPFKEDVV----KEV---- 222 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc----EEEcccccCHH----HHH----
Confidence 34677777766542 444555555 455458888888766665543 2321 01111111110 000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
........+|+++.+..- ...+..+.+.|+++|.++..+.
T Consensus 223 --------~~~~~~~~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 223 --------ADLTDGEGVDVFLEMSGA---PKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred --------HHhcCCCCCCEEEECCCC---HHHHHHHHHhhcCCCEEEEEcc
Confidence 011134568999864322 2346677888999999877543
No 426
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=68.53 E-value=16 Score=31.58 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=26.3
Q ss_pred CCCcEEEEcccc-cHHHHH-HHhcCCCeEEEEeCCHHHH
Q 041459 58 GGELFLDYGTGS-GILGIA-AIKFGAAMSVGVDIDPQAI 94 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~~~~-l~~~~~~~v~~vDi~~~~l 94 (225)
++.+|+-+|+|. |..... +...+..+++.++.++...
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra 215 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERA 215 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 588999999876 444333 3344677899999987654
No 427
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=67.93 E-value=54 Score=26.35 Aligned_cols=33 Identities=27% Similarity=0.194 Sum_probs=26.4
Q ss_pred CCCcEEEEcccc-cHH-HHHHHhcCCCeEEEEeCC
Q 041459 58 GGELFLDYGTGS-GIL-GIAAIKFGAAMSVGVDID 90 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~-~~~l~~~~~~~v~~vDi~ 90 (225)
...+|+=+|||. |.. +..+++.|..+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 578899999995 544 445778899999999976
No 428
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=67.86 E-value=69 Score=26.46 Aligned_cols=100 Identities=12% Similarity=0.156 Sum_probs=57.3
Q ss_pred CCcEEEEccccc----HHHHH-HHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 59 GELFLDYGTGSG----ILGIA-AIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 59 ~~~vlDiGcGtG----~~~~~-l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
.+.+++..|+-| ++++. +++....+++++-.++..+...++.+...++. +.+++..++... +.+.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~-~~vEfvvg~~~e------~~~~--- 111 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS-DVVEFVVGEAPE------EVMP--- 111 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc-ccceEEecCCHH------HHHh---
Confidence 467888865543 34444 33455677899999988888888887766654 334444433210 0010
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHH-HHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLL-QLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~-~~l~~~~~~LkpgG~l~~~ 182 (225)
.-...|+++.+--...+. +++..+. +.|.|-+++.
T Consensus 112 ------------~~~~iDF~vVDc~~~d~~~~vl~~~~--~~~~GaVVV~ 147 (218)
T PF07279_consen 112 ------------GLKGIDFVVVDCKREDFAARVLRAAK--LSPRGAVVVC 147 (218)
T ss_pred ------------hccCCCEEEEeCCchhHHHHHHHHhc--cCCCceEEEE
Confidence 234678888765555555 5555422 4455665553
No 429
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=67.79 E-value=26 Score=31.98 Aligned_cols=89 Identities=17% Similarity=0.218 Sum_probs=53.0
Q ss_pred CCCcEEEEcccc-cHHHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGS-GILGIAAI-KFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~~~~l~-~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.|++|+=+|+|. |......+ ..|. +|+.+|+++.....+.. .+.. .. +...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~----~G~~-----v~--~l~e--------------- 263 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAM----DGFR-----VM--TMEE--------------- 263 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHh----cCCE-----ec--CHHH---------------
Confidence 689999999987 43333333 4565 69999999865433321 2321 10 1000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHH-HHHHhccCCeEEEEeccCC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLAD-HIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~ 186 (225)
.....|+|+....- ..++. .....+|+|++++..+...
T Consensus 264 ----------al~~aDVVI~aTG~---~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 264 ----------AAELGDIFVTATGN---KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred ----------HHhCCCEEEECCCC---HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 12357999875422 22343 5777899999998865544
No 430
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=67.72 E-value=22 Score=30.52 Aligned_cols=99 Identities=21% Similarity=0.302 Sum_probs=53.0
Q ss_pred cCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 57 KGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 57 ~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.++.+|+-.|+|. |..+..+++ .|...+++++-++.-.+.+++ .+.. .+.......+. .
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~--------~--- 222 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGAD----VVINPREEDVV--------E--- 222 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcc----eeeCcccccHH--------H---
Confidence 4677777777653 455555555 455468888777766655543 2321 01101111110 0
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+......+.+|+++.+..- ......+.+.|+++|.++..+
T Consensus 223 ------~~~~~~~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 223 ------VKSVTDGTGVDVVLEMSGN---PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred ------HHHHcCCCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEEc
Confidence 0011134568999865422 234556678899999987643
No 431
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.39 E-value=2.5 Score=33.16 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=29.6
Q ss_pred CCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEEEe
Q 041459 146 ETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 146 ~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~ 182 (225)
.+++.|+|.+.-.++++ ...++.+.+.|||||.+-+.
T Consensus 44 ~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 44 EDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred CCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 57789999886665553 45789999999999999885
No 432
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=67.36 E-value=13 Score=32.13 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=52.6
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+.++.+|+=.|+|. |..++.+++ .|...+++++.++...+.+.. .+.. . +.......+. +.+..
T Consensus 172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~--~--v~~~~~~~~~----~~~~~-- 237 (350)
T cd08256 172 IKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK----FGAD--V--VLNPPEVDVV----EKIKE-- 237 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH----cCCc--E--EecCCCcCHH----HHHHH--
Confidence 44677776655543 344444554 577778999988876655542 2321 0 1111111110 00000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
......+|+++....- ...+..+.+.++++|.++..
T Consensus 238 ----------~~~~~~vdvvld~~g~---~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 238 ----------LTGGYGCDIYIEATGH---PSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred ----------HhCCCCCCEEEECCCC---hHHHHHHHHHhhcCCEEEEE
Confidence 1133458999864331 12356677888999998764
No 433
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=67.17 E-value=84 Score=29.47 Aligned_cols=95 Identities=12% Similarity=-0.018 Sum_probs=49.6
Q ss_pred CcEEEEcccc-cHHHH-HHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 60 ELFLDYGTGS-GILGI-AAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 60 ~~vlDiGcGt-G~~~~-~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
..++=+|||. |.... .+.+.+ ..++.+|.+++.++.+++ .+ .....+|.... +.....
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g-~~vvvId~d~~~~~~~~~----~g-----~~~i~GD~~~~-----~~L~~a----- 477 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG-IPLVVIETSRTRVDELRE----RG-----IRAVLGNAANE-----EIMQLA----- 477 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHH----CC-----CeEEEcCCCCH-----HHHHhc-----
Confidence 4566666665 33222 233344 459999999988877753 23 23555554332 111111
Q ss_pred cccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 138 SHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.-++.|.+++..+-+.-...+-...+...|+..++..
T Consensus 478 --------~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 478 --------HLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred --------CccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEE
Confidence 3457887766544333222222233455677777664
No 434
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=67.06 E-value=21 Score=28.10 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=50.1
Q ss_pred CCCcEEEEcccccHH--HHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGIL--GIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~--~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++++|.=+|.|+=.. +..|...|..-+++.--.....+.|+ ..|+.. ....+
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~----~~Gf~v----~~~~e------------------ 56 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK----ADGFEV----MSVAE------------------ 56 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH----HTT-EC----CEHHH------------------
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH----HCCCee----ccHHH------------------
Confidence 578999999997333 33355567754556655554554444 456432 11100
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHH-HHHHHhccCCeEEEEe
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLA-DHIVSYAKPGAVVGIS 182 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l-~~~~~~LkpgG~l~~~ 182 (225)
.-...|+|+.-.|-+...++. +.+...||+|-.++|+
T Consensus 57 ----------Av~~aDvV~~L~PD~~q~~vy~~~I~p~l~~G~~L~fa 94 (165)
T PF07991_consen 57 ----------AVKKADVVMLLLPDEVQPEVYEEEIAPNLKPGATLVFA 94 (165)
T ss_dssp ----------HHHC-SEEEE-S-HHHHHHHHHHHHHHHS-TT-EEEES
T ss_pred ----------HHhhCCEEEEeCChHHHHHHHHHHHHhhCCCCCEEEeC
Confidence 123579998877777666665 7788899999999985
No 435
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=66.84 E-value=40 Score=29.40 Aligned_cols=96 Identities=14% Similarity=0.186 Sum_probs=51.9
Q ss_pred cCCCcEEEEcccc-cHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 57 KGGELFLDYGTGS-GILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 57 ~~~~~vlDiGcGt-G~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
+++.+++-.|+|. |.+++.+++. |. ++++++.++.....+.+. .+.. .... .... +.+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~---~Ga~----~~i~-~~~~------~~~----- 238 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEH---LGAD----DYLV-SSDA------AEM----- 238 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh---cCCc----EEec-CCCh------HHH-----
Confidence 4678888777654 5555556654 54 577888777655444322 2321 0110 0000 000
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.. ....+|+++-.... ...+..+.+.++++|.++..+.
T Consensus 239 -------~~--~~~~~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 239 -------QE--AADSLDYIIDTVPV---FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred -------HH--hcCCCcEEEECCCc---hHHHHHHHHHhccCCEEEEECC
Confidence 00 11248988864331 2345667789999999887544
No 436
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=66.64 E-value=49 Score=27.68 Aligned_cols=49 Identities=10% Similarity=-0.065 Sum_probs=35.7
Q ss_pred CCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHH
Q 041459 147 TEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINR 195 (225)
Q Consensus 147 ~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 195 (225)
...+|+|+....-......++.+...+.+++.+++...+-.....+.+.
T Consensus 57 ~~~~D~iiv~vKs~~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~ 105 (293)
T TIGR00745 57 LPPADLVIITVKAYQTEEAAALLLPLIGKNTKVLFLQNGLGHEERLREL 105 (293)
T ss_pred cCCCCEEEEeccchhHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHH
Confidence 3479999988776777888899999999998887755554444444443
No 437
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=66.20 E-value=33 Score=25.74 Aligned_cols=43 Identities=26% Similarity=0.287 Sum_probs=27.2
Q ss_pred CCCcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHH
Q 041459 58 GGELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQN 100 (225)
Q Consensus 58 ~~~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~ 100 (225)
.+++++-+|||. | .++..+++.+...++.+|.++...+...+.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~ 62 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAER 62 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 468899999864 2 222223444456799999998766554433
No 438
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=65.97 E-value=73 Score=27.14 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=26.2
Q ss_pred CceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459 148 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 148 ~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
...|+|+...+......++..+...++++.+++.
T Consensus 70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~ 103 (325)
T PRK00094 70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIVW 103 (325)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEE
Confidence 3579999887777777788888888888876554
No 439
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=65.79 E-value=64 Score=26.42 Aligned_cols=103 Identities=15% Similarity=0.278 Sum_probs=57.6
Q ss_pred CCCcEEEEcccccHHHHHHHh----cC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIK----FG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~----~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
++..|++.|.--|.-+++.|. .| ..+++++|++-..++-+... . ..+.+..++.... .+.......
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~--p~i~f~egss~dp--ai~eqi~~~ 139 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V--PDILFIEGSSTDP--AIAEQIRRL 139 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C--CCeEEEeCCCCCH--HHHHHHHHH
Confidence 578999999999877776543 34 35699999987665544322 1 2344554444332 222222221
Q ss_pred ccccccccccCCCCCCceeEEEe----ccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 133 VEDLSSHEIRGISETEKYDVVIA----NILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
..+ +--|+. +-...+...-++....+|..|.++++.+
T Consensus 140 -------------~~~-y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 140 -------------KNE-YPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred -------------hcC-CCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 111 223332 2222334445666778888898888753
No 440
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=65.50 E-value=49 Score=28.52 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=28.9
Q ss_pred CceeEEEeccchhHHHHHHHHHHH-hccCCeEEEEecc
Q 041459 148 EKYDVVIANILLNPLLQLADHIVS-YAKPGAVVGISGI 184 (225)
Q Consensus 148 ~~~DvIi~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~~ 184 (225)
+..|+|+...+-......++.+.. .++++..++....
T Consensus 70 ~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~n 107 (326)
T PRK14620 70 DNATCIILAVPTQQLRTICQQLQDCHLKKNTPILICSK 107 (326)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEc
Confidence 467999998888888888998887 8888876655433
No 441
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=65.43 E-value=31 Score=29.41 Aligned_cols=100 Identities=20% Similarity=0.242 Sum_probs=54.4
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
..++.+||=.|+|+ |..+..+++ .+..++++++-++...+.+++ .+.. ........ +. +.+
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~-~~----~~i---- 227 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGAD----HVLNASDD-VV----EEV---- 227 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCc----EEEcCCcc-HH----HHH----
Confidence 34678888888654 333444454 354668889888876665532 2321 11111111 10 000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
........+|+++....- ...+..+.+.|+++|.++..+
T Consensus 228 --------~~~~~~~~~dvvld~~g~---~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 228 --------RELTGGRGADAVIDFVGS---DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred --------HHHhCCCCCCEEEEcCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence 111133469999864432 234667778899999988643
No 442
>PRK08818 prephenate dehydrogenase; Provisional
Probab=64.37 E-value=29 Score=30.98 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=26.4
Q ss_pred CceeEEEeccchhHHHHHHHHHHHh---ccCCeEE
Q 041459 148 EKYDVVIANILLNPLLQLADHIVSY---AKPGAVV 179 (225)
Q Consensus 148 ~~~DvIi~~~~~~~~~~~l~~~~~~---LkpgG~l 179 (225)
...|+|+...|.....++++++..+ |+||.++
T Consensus 50 ~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~iV 84 (370)
T PRK08818 50 QRADVLIFSAPIRHTAALIEEYVALAGGRAAGQLW 84 (370)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCeEE
Confidence 3579999999999999999988876 6887554
No 443
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=64.15 E-value=17 Score=32.14 Aligned_cols=95 Identities=13% Similarity=0.146 Sum_probs=51.8
Q ss_pred cCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHH-HHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 57 KGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQA-IKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 57 ~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~-l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++.+|+=.|+|. |.+++.+++ .|. ++++++.++.. .+.++ ..+.. .... .... +....
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~----~lGa~----~~i~--~~~~-----~~v~~-- 238 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAID----RLGAD----SFLV--TTDS-----QKMKE-- 238 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHH----hCCCc----EEEc--CcCH-----HHHHH--
Confidence 4678888888764 555566665 454 58888877543 33332 23322 0110 0000 00000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
....+|+++-...- ...+..+.+.++++|.++..+.
T Consensus 239 ------------~~~~~D~vid~~G~---~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 239 ------------AVGTMDFIIDTVSA---EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred ------------hhCCCcEEEECCCc---HHHHHHHHHhhcCCCEEEEEcc
Confidence 11248988864321 2245677789999999987554
No 444
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=63.61 E-value=44 Score=29.19 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=59.4
Q ss_pred CCCcEEEEcccccHHH--HHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILG--IAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~--~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++++|.-||||+=..+ .-|...|..-++|+--...+-+.| ...|+. +.. ...
T Consensus 17 kgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA----~~dGf~-----V~~--v~e--------------- 70 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKA----KEDGFK-----VYT--VEE--------------- 70 (338)
T ss_pred cCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHH----HhcCCE-----eec--HHH---------------
Confidence 6899999999994443 345567877777877666554444 345643 211 100
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHH-HHHHhccCCeEEEEe
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLAD-HIVSYAKPGAVVGIS 182 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~-~~~~~LkpgG~l~~~ 182 (225)
.-...|+|..-.|-....++.+ .+...|+.|..+.|+
T Consensus 71 ----------a~k~ADvim~L~PDe~q~~vy~~~I~p~Lk~G~aL~Fa 108 (338)
T COG0059 71 ----------AAKRADVVMILLPDEQQKEVYEKEIAPNLKEGAALGFA 108 (338)
T ss_pred ----------HhhcCCEEEEeCchhhHHHHHHHHhhhhhcCCceEEec
Confidence 2356799988777666666655 788999999998884
No 445
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=62.93 E-value=11 Score=33.59 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=26.6
Q ss_pred CCcEEEEcccc-cHHHHHHH-hcCCCeEEEEeCCHHHHHHHH
Q 041459 59 GELFLDYGTGS-GILGIAAI-KFGAAMSVGVDIDPQAIKSAH 98 (225)
Q Consensus 59 ~~~vlDiGcGt-G~~~~~l~-~~~~~~v~~vDi~~~~l~~a~ 98 (225)
+.+|+=+|+|. |..+...+ ..|. +++++|.++..++.+.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~ 207 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLD 207 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH
Confidence 45688888874 44444433 4566 6999999987765554
No 446
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=62.87 E-value=69 Score=27.36 Aligned_cols=88 Identities=17% Similarity=0.096 Sum_probs=51.4
Q ss_pred cEEEEccccc--HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459 61 LFLDYGTGSG--ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS 138 (225)
Q Consensus 61 ~vlDiGcGtG--~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (225)
+|-=+|+|.- .++..+++.+ .++++.|.++...+.+.+ .+... . .+...+ . .
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g-~~V~~~dr~~~~~~~l~~----~g~~~----~--~s~~~~-------~-~------- 55 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRG-HDCVGYDHDQDAVKAMKE----DRTTG----V--ANLREL-------S-Q------- 55 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH----cCCcc----c--CCHHHH-------H-h-------
Confidence 3555777762 2333455555 458899999987666543 22110 0 000000 0 0
Q ss_pred ccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459 139 HEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 139 ~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
.....|+|++..|......+++.+...|++|-+++-
T Consensus 56 -------~~~~~dvIi~~vp~~~~~~v~~~l~~~l~~g~ivid 91 (298)
T TIGR00872 56 -------RLSAPRVVWVMVPHGIVDAVLEELAPTLEKGDIVID 91 (298)
T ss_pred -------hcCCCCEEEEEcCchHHHHHHHHHHhhCCCCCEEEE
Confidence 123469998887777777888888888988865543
No 447
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=62.44 E-value=9 Score=32.67 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=25.4
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeC
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDI 89 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi 89 (225)
..++.+.|+.+|||..+..+.+.+.. |++-|+
T Consensus 26 ~s~k~f~DiFaGtGVV~~~fkk~~n~-iiaNDl 57 (330)
T COG3392 26 LSGKIFCDIFAGTGVVGRFFKKAGNK-IIANDL 57 (330)
T ss_pred cCCCeeeeeccCccHHHHHHHHhcch-hhhchH
Confidence 35778999999999999988777544 666665
No 448
>PRK07680 late competence protein ComER; Validated
Probab=61.85 E-value=55 Score=27.50 Aligned_cols=46 Identities=7% Similarity=-0.001 Sum_probs=29.6
Q ss_pred ceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHH
Q 041459 149 KYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINR 195 (225)
Q Consensus 149 ~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 195 (225)
..|+|+...+......+++.+...++++..++ +....-....+.+.
T Consensus 62 ~aDiVilav~p~~~~~vl~~l~~~l~~~~~ii-s~~ag~~~~~L~~~ 107 (273)
T PRK07680 62 QSDLIFICVKPLDIYPLLQKLAPHLTDEHCLV-SITSPISVEQLETL 107 (273)
T ss_pred hCCEEEEecCHHHHHHHHHHHHhhcCCCCEEE-EECCCCCHHHHHHH
Confidence 46988887776667778888888888776544 33332344444443
No 449
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.94 E-value=50 Score=28.25 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=28.4
Q ss_pred CcEEEEcccccH--HHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 60 ELFLDYGTGSGI--LGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 60 ~~vlDiGcGtG~--~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
++|.=+|+|.-. ++..+++.+. +++++|.+++.++.+++.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~ 47 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVI 47 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHH
Confidence 457778888633 3334555554 6999999999988877643
No 450
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=60.91 E-value=1e+02 Score=28.52 Aligned_cols=41 Identities=17% Similarity=-0.064 Sum_probs=27.9
Q ss_pred CcEEEEcccccHHHH--HHHhcC-CCeEEEEeCCHHHHHHHHHH
Q 041459 60 ELFLDYGTGSGILGI--AAIKFG-AAMSVGVDIDPQAIKSAHQN 100 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~--~l~~~~-~~~v~~vDi~~~~l~~a~~~ 100 (225)
++|.=+|+|...+.. .+++.| ..+|+++|+++..++..++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g 45 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSD 45 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcC
Confidence 357777888754433 355555 35699999999988776543
No 451
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=60.81 E-value=44 Score=28.67 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=51.3
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
+.++.+++=.|+|. |..+..+++....++++++.++...+.++. .+.. . +........
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~~--~--vi~~~~~~~------------- 225 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK----LGAD--E--FIATKDPEA------------- 225 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc--E--EecCcchhh-------------
Confidence 34567776677643 444444555323378999988877776642 2221 0 110000000
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
... ....+|+++...... ..+..+.+.|+++|.++..
T Consensus 226 ------~~~--~~~~~d~v~~~~g~~---~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 226 ------MKK--AAGSLDLIIDTVSAS---HDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred ------hhh--ccCCceEEEECCCCc---chHHHHHHHhcCCCEEEEE
Confidence 000 134589998654332 2356677888999988764
No 452
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.22 E-value=39 Score=29.79 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=32.0
Q ss_pred ccCCCcEEEEccc-ccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHH
Q 041459 56 IKGGELFLDYGTG-SGILGIAAIKFGAAMSVGVDIDPQAIKSAHQN 100 (225)
Q Consensus 56 ~~~~~~vlDiGcG-tG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~ 100 (225)
+.+|+.+--.|.| -|.+++..++.=..+++++|.+...-+.|-+.
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~ 224 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKS 224 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHh
Confidence 5588888777766 58888887764335599999987665555443
No 453
>PRK08655 prephenate dehydrogenase; Provisional
Probab=60.22 E-value=52 Score=30.02 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=26.2
Q ss_pred CceeEEEeccchhHHHHHHHHHHHhccCCeEEE
Q 041459 148 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 148 ~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~ 180 (225)
...|+|+...|......+++.+...+++|.+++
T Consensus 57 ~~aDvVIlavp~~~~~~vl~~l~~~l~~~~iVi 89 (437)
T PRK08655 57 KDADIVIISVPINVTEDVIKEVAPHVKEGSLLM 89 (437)
T ss_pred ccCCEEEEecCHHHHHHHHHHHHhhCCCCCEEE
Confidence 357999998888777888888888888887554
No 454
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=59.56 E-value=41 Score=28.79 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=53.9
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+..+.+|+=.|+|. |..+..+++ .|. ++++++.++.-++.+++ .+.. .+.......+. . .
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~----~~i~~~~~~~~----~---~-- 222 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARK----LGAH----HYIDTSKEDVA----E---A-- 222 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----cCCc----EEecCCCccHH----H---H--
Confidence 44678898888654 444555555 454 68999998877776643 2321 01111100010 0 0
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+. ....+|+++.... ....+..+.+.|+++|.++..+
T Consensus 223 -------~~---~~~~~d~vi~~~g---~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 223 -------LQ---ELGGAKLILATAP---NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred -------HH---hcCCCCEEEECCC---chHHHHHHHHHcccCCEEEEEe
Confidence 00 1134798885321 1235667788999999988643
No 455
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=59.35 E-value=90 Score=27.43 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=26.8
Q ss_pred CCCcEEEEcccc-cHH-HHHHHhcCCCeEEEEeCCH
Q 041459 58 GGELFLDYGTGS-GIL-GIAAIKFGAAMSVGVDIDP 91 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~-~~~l~~~~~~~v~~vDi~~ 91 (225)
...+|+=+|||. |.. +..|++.|..+++.+|.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 467899999996 544 4457888999999999874
No 456
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=59.18 E-value=55 Score=28.13 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=50.4
Q ss_pred CCCcEEEEcccc-cHHHHH-HHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGS-GILGIA-AIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~~~~-l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.+.+++=+|+|. |..... +...|. +++++|.++...+.++. .+.. .. ....+ ..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~----~G~~-----~~--~~~~l--------~~---- 206 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITE----MGLS-----PF--HLSEL--------AE---- 206 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCCe-----ee--cHHHH--------HH----
Confidence 478999999986 333333 334565 79999999876555432 2321 11 00000 00
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
.-..+|+||...|... +-+...+.+++|++++=
T Consensus 207 ----------~l~~aDiVI~t~p~~~---i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 207 ----------EVGKIDIIFNTIPALV---LTKEVLSKMPPEALIID 239 (296)
T ss_pred ----------HhCCCCEEEECCChhh---hhHHHHHcCCCCcEEEE
Confidence 1246899988654321 23456677889887763
No 457
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=59.00 E-value=81 Score=26.76 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=53.7
Q ss_pred CcEEEEccccc--HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh-------cCCC-CC----cc-eEEEecCCCCCcc
Q 041459 60 ELFLDYGTGSG--ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL-------NNIG-PK----KM-KLHLVPDRTFPAS 124 (225)
Q Consensus 60 ~~vlDiGcGtG--~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~-------~~~~-~~----~~-~~~~~~~~~~~~~ 124 (225)
++|.=+|+|.= .++..++..| .++++.|.+++.++.+++.+.. .+.- .. .. .....+. .
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~--- 78 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG-MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTN--L--- 78 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCC--H---
Confidence 45777888863 3333345555 4699999999998876654431 1110 00 00 0000000 0
Q ss_pred ccccccccccccccccccCCCCCCceeEEEeccc--hhHHHHHHHHHHHhccCCeEEE
Q 041459 125 MNERVDGIVEDLSSHEIRGISETEKYDVVIANIL--LNPLLQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~--~~~~~~~l~~~~~~LkpgG~l~ 180 (225)
..-...|+|+...+ ......++.++...++++.+++
T Consensus 79 --------------------~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 79 --------------------EELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred --------------------HHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 01234699998776 4445667777888888887654
No 458
>PRK08324 short chain dehydrogenase; Validated
Probab=58.86 E-value=91 Score=30.07 Aligned_cols=42 Identities=31% Similarity=0.357 Sum_probs=26.9
Q ss_pred CCCcEEEEcccccHHHHH----HHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 58 GGELFLDYGTGSGILGIA----AIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~----l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
.++++|=.|++ |.++.. +++.|. +++++|.++..++.+...+
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l 466 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAEL 466 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHH
Confidence 46778877654 444443 344554 6999999998776655443
No 459
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=58.32 E-value=1.4e+02 Score=26.80 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=26.7
Q ss_pred CCCcEEEEcccccHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHH
Q 041459 58 GGELFLDYGTGSGILGIAAIK---FGAAMSVGVDIDPQAIKSAHQN 100 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~---~~~~~v~~vDi~~~~l~~a~~~ 100 (225)
..++++=+|+|. ++..+++ .....++.+|.+++.++.++..
T Consensus 230 ~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~ 273 (453)
T PRK09496 230 PVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEE 273 (453)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence 456788877754 4433332 2234699999999988776653
No 460
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=58.16 E-value=26 Score=30.01 Aligned_cols=100 Identities=20% Similarity=0.228 Sum_probs=53.3
Q ss_pred ccCCCcEEEEccc-ccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTG-SGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcG-tG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+.++.+|+=.|+| .|..++.+++. |...+++++-++...+.++. .+.. .+.......+ .+.+..
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~----~g~~----~~~~~~~~~~----~~~i~~-- 228 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK----LGAD----YTIDAAEEDL----VEKVRE-- 228 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc----EEecCCccCH----HHHHHH--
Confidence 4567888888765 24445555554 44448888888877766532 2221 1111110000 000000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
......+|+++.+..-. ..+..+.+.|+++|.++..
T Consensus 229 ----------~~~~~~vd~vld~~~~~---~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 229 ----------LTDGRGADVVIVATGSP---EAQAQALELVRKGGRILFF 264 (343)
T ss_pred ----------HhCCcCCCEEEECCCCh---HHHHHHHHHhhcCCEEEEE
Confidence 11344589998643321 3456667888999998764
No 461
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=57.88 E-value=1.2e+02 Score=26.02 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=53.2
Q ss_pred ccCCCcEEEEcc--cccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGc--GtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|.+||=-.+ |-|.+...+++.-...+++.-.+.+-.+.|++|-..+.+. ....| ....
T Consensus 144 vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~I~-----y~~eD----------~v~~-- 206 (336)
T KOG1197|consen 144 VKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEHPID-----YSTED----------YVDE-- 206 (336)
T ss_pred CCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCCcceee-----ccchh----------HHHH--
Confidence 568887765433 3455555566654455667666666666676554333322 22111 0011
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
+.-+......|+++-....+ .++....+||++|.++-
T Consensus 207 -------V~kiTngKGVd~vyDsvG~d----t~~~sl~~Lk~~G~mVS 243 (336)
T KOG1197|consen 207 -------VKKITNGKGVDAVYDSVGKD----TFAKSLAALKPMGKMVS 243 (336)
T ss_pred -------HHhccCCCCceeeeccccch----hhHHHHHHhccCceEEE
Confidence 11122456688886433333 34456678999999875
No 462
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=57.63 E-value=59 Score=27.77 Aligned_cols=100 Identities=24% Similarity=0.354 Sum_probs=52.9
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
..++.+|+=.|+|. |..++.+++ .|..++++++.++...+.+++ .+.. .+.. ....+. ..+.
T Consensus 165 ~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~----~~~~-~~~~~~----~~l~--- 228 (344)
T cd08284 165 VRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGAE----PINF-EDAEPV----ERVR--- 228 (344)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCCe----EEec-CCcCHH----HHHH---
Confidence 44677887776543 334444454 455578899887766555443 2211 0111 111110 0010
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
...+...+|+++..... ...+....+.++++|.++..+
T Consensus 229 ---------~~~~~~~~dvvid~~~~---~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 229 ---------EATEGRGADVVLEAVGG---AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred ---------HHhCCCCCCEEEECCCC---HHHHHHHHHhcccCCEEEEEC
Confidence 11134568999864322 234667778899999987643
No 463
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=57.58 E-value=12 Score=36.43 Aligned_cols=44 Identities=25% Similarity=0.365 Sum_probs=37.4
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
.+..++|-.+|-|.+.+.++++|. .++++|++|.+.-..++.+.
T Consensus 90 ~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAylfLKavlE 133 (875)
T COG1743 90 EGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAYLFLKAVLE 133 (875)
T ss_pred cCCcccccccCCCccchHHHhcCc-eeEEEecccHHHHHHHHHHh
Confidence 456899999999999999999984 59999999988777666554
No 464
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=56.80 E-value=47 Score=28.37 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCCcEEEEccccc-HHHH--HHHhcCCCeEEEEeCCH
Q 041459 58 GGELFLDYGTGSG-ILGI--AAIKFGAAMSVGVDIDP 91 (225)
Q Consensus 58 ~~~~vlDiGcGtG-~~~~--~l~~~~~~~v~~vDi~~ 91 (225)
.+++++=+|+| | ..++ .++..|..+++.++.++
T Consensus 125 ~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46788988887 4 2222 24567888899999986
No 465
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=56.72 E-value=43 Score=26.08 Aligned_cols=46 Identities=17% Similarity=0.092 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcc-CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCC
Q 041459 45 TKLCLLLLQSLIK-GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDID 90 (225)
Q Consensus 45 ~~~~~~~L~~~~~-~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~ 90 (225)
++.++.+....+. -..-|+|+|-|+|..=-++.+ .+..+|++.|-.
T Consensus 14 QR~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 14 QRDCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp HHHHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred HHHHHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 4455555544433 235799999999998888887 577889999963
No 466
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=56.58 E-value=1.1e+02 Score=26.98 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=26.3
Q ss_pred CCCcEEEEcccc-cHH-HHHHHhcCCCeEEEEeCC
Q 041459 58 GGELFLDYGTGS-GIL-GIAAIKFGAAMSVGVDID 90 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~-~~~l~~~~~~~v~~vDi~ 90 (225)
...+|+=+|||. |.. +..|++.|..+++.+|.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 468899999995 543 445778899999999986
No 467
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=55.59 E-value=31 Score=30.31 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=55.5
Q ss_pred CcEEEEcccc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459 60 ELFLDYGTGS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS 138 (225)
Q Consensus 60 ~~vlDiGcGt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (225)
.+|.-+|.|. |+.+..++....+.|+.+|+|..-++....-. + .++.........+ ..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f---~---~rv~~~~st~~~i--------ee------- 227 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLF---G---GRVHTLYSTPSNI--------EE------- 227 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhh---C---ceeEEEEcCHHHH--------HH-------
Confidence 4567777775 66666666544566999999987765554321 1 2233332221111 00
Q ss_pred ccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCeEEE
Q 041459 139 HEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 139 ~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG~l~ 180 (225)
.-.+.|++|..... ..+.-..+++.+.+|||++++
T Consensus 228 -------~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 228 -------AVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred -------HhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 23568988874332 234556778888999999887
No 468
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=55.46 E-value=98 Score=25.67 Aligned_cols=98 Identities=11% Similarity=0.070 Sum_probs=53.8
Q ss_pred cEEEEcccc-c-HHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 61 LFLDYGTGS-G-ILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 61 ~vlDiGcGt-G-~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
+|.=+|||. | .++..+.+.+ ...++++|.+++..+.+.... ++. .. .+...
T Consensus 4 ~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~---g~~-----~~-~~~~~---------------- 58 (267)
T PRK11880 4 KIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY---GVR-----AA-TDNQE---------------- 58 (267)
T ss_pred EEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc---CCe-----ec-CChHH----------------
Confidence 567788876 3 2333344444 256889999887765544321 211 10 00000
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHH
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINR 195 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 195 (225)
.....|+|+...+.....++++.+...+ + .++++....-....+...
T Consensus 59 ---------~~~~advVil~v~~~~~~~v~~~l~~~~--~-~~vvs~~~gi~~~~l~~~ 105 (267)
T PRK11880 59 ---------AAQEADVVVLAVKPQVMEEVLSELKGQL--D-KLVVSIAAGVTLARLERL 105 (267)
T ss_pred ---------HHhcCCEEEEEcCHHHHHHHHHHHHhhc--C-CEEEEecCCCCHHHHHHh
Confidence 1235799988877777788888777666 3 345544433344444433
No 469
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=55.34 E-value=88 Score=27.66 Aligned_cols=34 Identities=18% Similarity=0.042 Sum_probs=26.5
Q ss_pred CCCcEEEEcccc-cHH-HHHHHhcCCCeEEEEeCCH
Q 041459 58 GGELFLDYGTGS-GIL-GIAAIKFGAAMSVGVDIDP 91 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~-~~~l~~~~~~~v~~vDi~~ 91 (225)
...+|+=+|||. |.. +..++..|..+++.+|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 468999999995 544 4457888999999999764
No 470
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=54.54 E-value=30 Score=29.09 Aligned_cols=99 Identities=17% Similarity=0.201 Sum_probs=52.7
Q ss_pred ccCCCcEEEEcccc--cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS--GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt--G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
..++.+++-.|++. |.....++.....+++.++.++...+.++. .+.. ..+...+ ... .+.+..
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~~~---~~~~~~~-~~~----~~~~~~-- 229 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE----LGAD---YVIDYRK-EDF----VREVRE-- 229 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---eEEecCC-hHH----HHHHHH--
Confidence 34678888888764 444444454333458888888876665532 1211 0111100 000 000000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
......+|+++.+... ..+..+.+.++++|.++..
T Consensus 230 ----------~~~~~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 230 ----------LTGKRGVDVVVEHVGA----ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred ----------HhCCCCCcEEEECCcH----HHHHHHHHHhhcCCEEEEE
Confidence 0023468999876543 2355667788999988764
No 471
>PRK06153 hypothetical protein; Provisional
Probab=54.49 E-value=25 Score=31.66 Aligned_cols=33 Identities=21% Similarity=0.081 Sum_probs=26.9
Q ss_pred CCCcEEEEcccc-cHHHH-HHHhcCCCeEEEEeCC
Q 041459 58 GGELFLDYGTGS-GILGI-AAIKFGAAMSVGVDID 90 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~~~-~l~~~~~~~v~~vDi~ 90 (225)
.+.+|+=+|||- |.... .|++.|..+++.+|-+
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 578999999985 76544 5888999999999965
No 472
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=54.42 E-value=90 Score=27.29 Aligned_cols=100 Identities=12% Similarity=0.060 Sum_probs=55.5
Q ss_pred CCcEEEEcccccHH--HHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 59 GELFLDYGTGSGIL--GIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL-NNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 59 ~~~vlDiGcGtG~~--~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++|.=+|+|.-.. +..+++.+ .++....++...+..++.-.. ..+. ....+. ..-... .....
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~~~~~l~-~~~~l~--~~i~~t----~d~~~---- 73 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHRNSRYLG-NDVVLS--DTLRAT----TDFAE---- 73 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCCCcccCC-CCcccC--CCeEEE----CCHHH----
Confidence 46788899998433 33466666 366666778776665542110 0010 001000 000000 00000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
.....|+|+...+.......++.+...++++..++.
T Consensus 74 ----------a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIs 109 (341)
T PRK12439 74 ----------AANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVS 109 (341)
T ss_pred ----------HHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEE
Confidence 124579999988888888999999999988865544
No 473
>PLN02494 adenosylhomocysteinase
Probab=54.32 E-value=37 Score=31.40 Aligned_cols=98 Identities=17% Similarity=0.143 Sum_probs=55.8
Q ss_pred CCCcEEEEcccc-cHHHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGS-GILGIAAI-KFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~~~~l~-~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.|++|+=+|+|. |......+ ..|. +|+++|.++.....|. ..+.. .. +.+.
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~----~~G~~-----vv--~leE--------------- 305 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQAL----MEGYQ-----VL--TLED--------------- 305 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHH----hcCCe-----ec--cHHH---------------
Confidence 689999999997 44333333 3565 6999999985443332 22321 10 0000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCC--CcHHHHHH
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS--EQLPHIIN 194 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~ 194 (225)
.-...|++++...-. .-+.......+|+||+++-.+... -+...+.+
T Consensus 306 ----------al~~ADVVI~tTGt~--~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~ 354 (477)
T PLN02494 306 ----------VVSEADIFVTTTGNK--DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLET 354 (477)
T ss_pred ----------HHhhCCEEEECCCCc--cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhh
Confidence 012469888743322 112356777899999998865532 23444443
No 474
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=52.48 E-value=1.7e+02 Score=26.30 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=23.5
Q ss_pred cEEEEcccccHHHHHHHh---cCCCeEEEEeCCHHHHHHHHH
Q 041459 61 LFLDYGTGSGILGIAAIK---FGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 61 ~vlDiGcGtG~~~~~l~~---~~~~~v~~vDi~~~~l~~a~~ 99 (225)
+|+=+|+ |.++..+++ .....++++|.++..++.++.
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~ 41 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQD 41 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh
Confidence 4555665 555555443 223469999999988776653
No 475
>PLN02712 arogenate dehydrogenase
Probab=52.28 E-value=89 Score=30.27 Aligned_cols=85 Identities=11% Similarity=0.087 Sum_probs=49.4
Q ss_pred CCcEEEEcccc--cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 59 GELFLDYGTGS--GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 59 ~~~vlDiGcGt--G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
..+|.=||+|. |.++..+.+.| .+++++|.+... +.|+ ..++. . ..+....
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G-~~V~~~dr~~~~-~~A~----~~Gv~-----~-~~d~~e~--------------- 104 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQG-HTVLAHSRSDHS-LAAR----SLGVS-----F-FLDPHDL--------------- 104 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHH----HcCCE-----E-eCCHHHH---------------
Confidence 46789999875 33444455555 469999987532 2222 22321 1 1111000
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHH-HhccCCeEE
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIV-SYAKPGAVV 179 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~-~~LkpgG~l 179 (225)
.....|+|+...|......++..+. ..+++|.++
T Consensus 105 ---------~~~~aDvViLavP~~~~~~vl~~l~~~~l~~g~iV 139 (667)
T PLN02712 105 ---------CERHPDVILLCTSIISTENVLKSLPLQRLKRNTLF 139 (667)
T ss_pred ---------hhcCCCEEEEcCCHHHHHHHHHhhhhhcCCCCeEE
Confidence 1124799999888877777777765 567777633
No 476
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=52.07 E-value=1.2e+02 Score=24.97 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=22.1
Q ss_pred CCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 147 TEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 147 ~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
...+|+++.+..-. ....+.+.++++|.++..
T Consensus 206 ~~~~d~v~~~~~~~----~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 206 PGGVDAVLDTVGGE----TLARSLALVKPGGRLVSI 237 (309)
T ss_pred CCCceEEEECCchH----HHHHHHHHHhcCcEEEEE
Confidence 44689988644322 456677888999998754
No 477
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=52.02 E-value=55 Score=27.92 Aligned_cols=44 Identities=34% Similarity=0.434 Sum_probs=29.2
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHH
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~ 99 (225)
++++.+||=.|+|. |..+..+++ .|...+++++.++...+.+++
T Consensus 159 ~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 204 (341)
T cd08262 159 LTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALA 204 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 45678888887542 344444454 466668899988887776653
No 478
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=51.90 E-value=44 Score=28.60 Aligned_cols=96 Identities=20% Similarity=0.177 Sum_probs=50.5
Q ss_pred ccCCCcEEEEcc-c-ccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGT-G-SGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGc-G-tG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+.++.+|+=.|+ | .|..++.+++....++++++.+. ..+.++ ..+.. .+.. ....... . .
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~----~~g~~----~~~~-~~~~~~~---~--~--- 236 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVR----ALGAD----TVIL-RDAPLLA---D--A--- 236 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHH----hcCCe----EEEe-CCCccHH---H--H---
Confidence 456889998887 3 25555555654334477777543 333332 22321 1111 1111000 0 0
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.......+|+++....- ..+..+.+.++++|.++..
T Consensus 237 ---------~~~~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 237 ---------KALGGEPVDVVADVVGG----PLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred ---------HhhCCCCCcEEEecCCH----HHHHHHHHHhccCCEEEEe
Confidence 00134569999864332 3466778899999998753
No 479
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=51.89 E-value=1.8e+02 Score=26.08 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=23.9
Q ss_pred cEEEEcccccHH--HHHHHhcCCCeEEEEeCCHHHHHHHH
Q 041459 61 LFLDYGTGSGIL--GIAAIKFGAAMSVGVDIDPQAIKSAH 98 (225)
Q Consensus 61 ~vlDiGcGtG~~--~~~l~~~~~~~v~~vDi~~~~l~~a~ 98 (225)
+|-=+|+|.-.. +..+++.|. +|+++|.++..++..+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~ 40 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLN 40 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhh
Confidence 355577776333 333455554 5999999998876644
No 480
>PRK07904 short chain dehydrogenase; Provisional
Probab=51.57 E-value=95 Score=25.48 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=27.6
Q ss_pred CCCcEEEEcccccHHHHH----HHhcCCCeEEEEeCCHHH-HHHHHHHHHh
Q 041459 58 GGELFLDYGTGSGILGIA----AIKFGAAMSVGVDIDPQA-IKSAHQNAAL 103 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~----l~~~~~~~v~~vDi~~~~-l~~a~~~~~~ 103 (225)
.++++|-.|++.| ++.. +++.+..+++.++.++.. ++.+.+.+..
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~ 56 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKA 56 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHh
Confidence 4567888877544 4443 344454678899888764 5555444443
No 481
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=51.35 E-value=1.8e+02 Score=26.03 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=29.4
Q ss_pred CceeEEEeccch-----------hHHHHHHHHHHHhccCCeEEEE-eccCCCcHHHHHHHHH
Q 041459 148 EKYDVVIANILL-----------NPLLQLADHIVSYAKPGAVVGI-SGILSEQLPHIINRYS 197 (225)
Q Consensus 148 ~~~DvIi~~~~~-----------~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~~~~~ 197 (225)
...|+|+.+.+- ......++.+.+ +++|.+++. |+.......++...+.
T Consensus 72 ~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~ 132 (388)
T PRK15057 72 RDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYR 132 (388)
T ss_pred cCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhh
Confidence 346888775442 234455677776 688877765 4455555566655544
No 482
>PRK06141 ornithine cyclodeaminase; Validated
Probab=51.21 E-value=76 Score=27.43 Aligned_cols=45 Identities=16% Similarity=0.023 Sum_probs=30.2
Q ss_pred CCCcEEEEcccc-cHHHHH-HHh-cCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 58 GGELFLDYGTGS-GILGIA-AIK-FGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~~~~-l~~-~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
+..+|+-+|||. |..... ++. .+..+++..+.+++..+...+.+.
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~ 171 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELR 171 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 567899999886 433332 233 467889999999877666554443
No 483
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=50.99 E-value=45 Score=28.60 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=54.0
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC-CCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 133 (225)
..++.+|+=.|+|. |..+..+++....++++++-+++..+.+++ .+.. .+..... ..+. ..+..
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~----~~i~~~~~~~~~----~~~~~-- 228 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE----LGAV----ATVNASEVEDVA----AAVRD-- 228 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH----hCCC----EEEccccchhHH----HHHHH--
Confidence 34677888888653 444455555433468899888877766642 2321 1111111 0100 00000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
.... .+|+++....- ...+....+.|+++|.++..+
T Consensus 229 ----------~~~~-~~d~vi~~~g~---~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 229 ----------LTGG-GAHVSVDALGI---PETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred ----------HhCC-CCCEEEEcCCC---HHHHHHHHHHhhcCCEEEEeC
Confidence 0123 69999865321 234556778899999987643
No 484
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=50.97 E-value=46 Score=27.59 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=28.1
Q ss_pred ccCCCcEEEEccc--ccHHHHHHHhcCCCeEEEEeCCHHHHHHHH
Q 041459 56 IKGGELFLDYGTG--SGILGIAAIKFGAAMSVGVDIDPQAIKSAH 98 (225)
Q Consensus 56 ~~~~~~vlDiGcG--tG~~~~~l~~~~~~~v~~vDi~~~~l~~a~ 98 (225)
+.++.+|+-.||. .|..+..+++.....+++++.++...+.++
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 181 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALAR 181 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHH
Confidence 4468899999983 244444555533345889988887766664
No 485
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=50.92 E-value=1.6e+02 Score=26.05 Aligned_cols=33 Identities=24% Similarity=0.127 Sum_probs=26.0
Q ss_pred CCCcEEEEcccc-cHH-HHHHHhcCCCeEEEEeCC
Q 041459 58 GGELFLDYGTGS-GIL-GIAAIKFGAAMSVGVDID 90 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~-~~~l~~~~~~~v~~vDi~ 90 (225)
.+.+|+=+|||. |.. +..|++.|..+++.+|-+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467899999984 544 445778899999999987
No 486
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=50.77 E-value=60 Score=27.94 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=54.1
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+.+|+.-.|+|+-+|..+-.+-+.+. .|++||-.+ | |+ ++...| .+.-...|+-.+.+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~-m---a~-sL~dtg----~v~h~r~DGfk~~P------------ 266 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGP-M---AQ-SLMDTG----QVTHLREDGFKFRP------------ 266 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce-EEEEeccch-h---hh-hhhccc----ceeeeeccCccccc------------
Confidence 34789999999999999998887754 499999655 2 22 222222 23333344433311
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG 176 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg 176 (225)
...+.|..+|++.- .+..+..-+..+|..|
T Consensus 267 ----------~r~~idWmVCDmVE-kP~rv~~li~~Wl~nG 296 (358)
T COG2933 267 ----------TRSNIDWMVCDMVE-KPARVAALIAKWLVNG 296 (358)
T ss_pred ----------CCCCCceEEeehhc-CcHHHHHHHHHHHHcc
Confidence 24578999987643 3344445555666665
No 487
>PTZ00117 malate dehydrogenase; Provisional
Probab=50.73 E-value=1.7e+02 Score=25.41 Aligned_cols=38 Identities=13% Similarity=-0.001 Sum_probs=26.3
Q ss_pred CCCcEEEEcccc-cHHHHH-HHhcCCCeEEEEeCCHHHHH
Q 041459 58 GGELFLDYGTGS-GILGIA-AIKFGAAMSVGVDIDPQAIK 95 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~~~~-l~~~~~~~v~~vDi~~~~l~ 95 (225)
+..+|.=+|+|+ |..... ++..+...+..+|++++..+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~ 43 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ 43 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch
Confidence 456889999988 644333 44455467999999886543
No 488
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=50.53 E-value=1.8e+02 Score=26.50 Aligned_cols=128 Identities=15% Similarity=0.043 Sum_probs=67.6
Q ss_pred CCCchHHHHHHHHHhh-----ccCCCcEEEEcccccHHHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceE
Q 041459 40 GEHATTKLCLLLLQSL-----IKGGELFLDYGTGSGILGIAAI-KFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKL 113 (225)
Q Consensus 40 ~~~~~~~~~~~~L~~~-----~~~~~~vlDiGcGtG~~~~~l~-~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~ 113 (225)
|..+..+.+...+..+ ......++-.||-.+.....+. .....+|+..|-.= ..--.+....|-.+..+..
T Consensus 70 G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~f---d~Y~~~~~maG~tpv~v~~ 146 (420)
T KOG0257|consen 70 GLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFF---DCYIPQVVMAGGTPVFVPL 146 (420)
T ss_pred CchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcc---hhhhhHHhhcCCcceeecc
Confidence 3444444444555442 2234577888888887755544 34566788887422 2222223334433211111
Q ss_pred EEe----cCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459 114 HLV----PDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 114 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
... ....++.+..+.... -.++=++|+.|.|-++ .++.++++.++++..|.+++++-
T Consensus 147 ~~~~g~~~s~~~~~D~~~le~~--------------~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDe 212 (420)
T KOG0257|consen 147 KPKEGNVSSSDWTLDPEELESK--------------ITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDE 212 (420)
T ss_pred ccccccccCccccCChHHHHhh--------------ccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhh
Confidence 111 122221111111111 2455688888776544 47789999999999999998643
No 489
>PLN02702 L-idonate 5-dehydrogenase
Probab=50.50 E-value=60 Score=28.20 Aligned_cols=104 Identities=21% Similarity=0.276 Sum_probs=56.0
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe-cCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV-PDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 132 (225)
+.++.+|+=.|+|. |..++.+++ .|...++++|.++...+.+++ .+... . .... ....+. +.+..+
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~--~-~~~~~~~~~~~----~~~~~~ 247 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ----LGADE--I-VLVSTNIEDVE----SEVEEI 247 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCE--E-EecCcccccHH----HHHHHH
Confidence 45677888887653 445555554 576678999998877766543 23221 1 1110 001110 000000
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
.. .....+|+++....- ...+....+.|+++|.++..+
T Consensus 248 ---------~~-~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 248 ---------QK-AMGGGIDVSFDCVGF---NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred ---------hh-hcCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEc
Confidence 00 023468999864321 234677788999999987644
No 490
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=50.33 E-value=55 Score=24.41 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=29.8
Q ss_pred CCCcEEEEcccc-cHHHH-HHHhcCCCeEEEEeCCHHHHHHHHH
Q 041459 58 GGELFLDYGTGS-GILGI-AAIKFGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~~~-~l~~~~~~~v~~vDi~~~~l~~a~~ 99 (225)
++++++=+|+|- |.... .++..+..+++.+..+.+-.+...+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~ 54 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAE 54 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHH
Confidence 689999999975 33333 4667788999999988765444433
No 491
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=50.03 E-value=76 Score=27.60 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=24.4
Q ss_pred CceeEEEeccchh-HHHHHHHHHHHhccCCeEEEE
Q 041459 148 EKYDVVIANILLN-PLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 148 ~~~DvIi~~~~~~-~~~~~l~~~~~~LkpgG~l~~ 181 (225)
...|+|+...+.. ....+.+.+...+++|-++.+
T Consensus 58 ~~ADiVvLaVpp~~~~~~v~~ei~~~l~~g~iVs~ 92 (314)
T TIGR00465 58 PQADLIMNLLPDEVQHEVYEAEIQPLLKEGKTLGF 92 (314)
T ss_pred hcCCEEEEeCCcHhHHHHHHHHHHhhCCCCcEEEE
Confidence 4569999887766 555566678788888866655
No 492
>PLN02688 pyrroline-5-carboxylate reductase
Probab=49.90 E-value=1.5e+02 Score=24.56 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=30.0
Q ss_pred ceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHH
Q 041459 149 KYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINR 195 (225)
Q Consensus 149 ~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 195 (225)
..|+|+...+......++..+...++++.+++ +....-....+.+.
T Consensus 61 ~aDvVil~v~~~~~~~vl~~l~~~~~~~~~iI-s~~~g~~~~~l~~~ 106 (266)
T PLN02688 61 SSDVIILAVKPQVVKDVLTELRPLLSKDKLLV-SVAAGITLADLQEW 106 (266)
T ss_pred cCCEEEEEECcHHHHHHHHHHHhhcCCCCEEE-EecCCCcHHHHHHH
Confidence 46999888776667777777777777776544 44344445555443
No 493
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=49.56 E-value=61 Score=28.53 Aligned_cols=53 Identities=11% Similarity=0.036 Sum_probs=41.1
Q ss_pred CceeEEEeccchh--HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhh
Q 041459 148 EKYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFL 200 (225)
Q Consensus 148 ~~~DvIi~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 200 (225)
..+|.|+.-.|-. .....+..+...|+|||.+++.+--.+....+.+.+.+++
T Consensus 75 ~~~d~~~~~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~~~g~~s~~k~~~~~~ 129 (342)
T PRK09489 75 ADCDTLIYYWPKNKQEAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLADYA 129 (342)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEEEEeccccHHHHHHHHHHhc
Confidence 5799999877754 3455688899999999999998777777777777776654
No 494
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=49.07 E-value=1.1e+02 Score=25.69 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=25.6
Q ss_pred ecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcc
Q 041459 31 LNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGT 67 (225)
Q Consensus 31 ~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGc 67 (225)
+.|...|..|.+......++....+...|..++|+|+
T Consensus 9 ~tpdSF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~ 45 (257)
T cd00739 9 VTPDSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGG 45 (257)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Confidence 4555555555555556666666666778999999995
No 495
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=48.55 E-value=69 Score=27.98 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=17.4
Q ss_pred HHHHHHHHHhccCCeEEEEec
Q 041459 163 LQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 163 ~~~l~~~~~~LkpgG~l~~~~ 183 (225)
..++..+-..++||..+.+.+
T Consensus 222 t~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 222 TKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred HHHHHHHHhhcCCCcEEEEEc
Confidence 467889999999999988753
No 496
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=48.51 E-value=76 Score=26.73 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=52.2
Q ss_pred CCCcEEEEcc-cc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGT-GS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGc-Gt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.+.+|+=.|+ |. |..++.+++.-..++++++.++...+.+++ .+.. . +..... .. . +..
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~--~--v~~~~~-~~-~---~~~------ 206 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKK----LGAK--E--VIPREE-LQ-E---ESI------ 206 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH----cCCC--E--EEcchh-HH-H---HHH------
Confidence 3568888877 32 455555565433458888888877666642 2321 0 110000 00 0 000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
... ....+|+++.... ...+....+.++++|.++..+.
T Consensus 207 ------~~~-~~~~~d~vld~~g----~~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 207 ------KPL-EKQRWAGAVDPVG----GKTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred ------Hhh-ccCCcCEEEECCc----HHHHHHHHHHhhcCCEEEEEee
Confidence 011 2345898875332 1346677888999999887543
No 497
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=48.14 E-value=55 Score=28.88 Aligned_cols=35 Identities=11% Similarity=0.053 Sum_probs=26.7
Q ss_pred CceeEEEeccchhHHHHHH-HHHHHhccCCeEEEEe
Q 041459 148 EKYDVVIANILLNPLLQLA-DHIVSYAKPGAVVGIS 182 (225)
Q Consensus 148 ~~~DvIi~~~~~~~~~~~l-~~~~~~LkpgG~l~~~ 182 (225)
...|+|+...|......++ +.+...+|+|.+++|+
T Consensus 70 k~ADVV~llLPd~~t~~V~~~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 70 RTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFS 105 (335)
T ss_pred hcCCEEEEeCCChHHHHHHHHHHHhcCCCCCEEEEC
Confidence 4579999988765555555 4688899999999884
No 498
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=48.04 E-value=39 Score=26.02 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=28.9
Q ss_pred ceeEEEeccch-hHHHHHHHH--HHHhccCCeEEEEecc-CCCcHHHHHHHHH
Q 041459 149 KYDVVIANILL-NPLLQLADH--IVSYAKPGAVVGISGI-LSEQLPHIINRYS 197 (225)
Q Consensus 149 ~~DvIi~~~~~-~~~~~~l~~--~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~ 197 (225)
..|+|++..+- ......+.. +...|++|.+++-... ......++.+.+.
T Consensus 57 ~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~ 109 (163)
T PF03446_consen 57 QADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLA 109 (163)
T ss_dssp HBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHH
T ss_pred cccceEeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhh
Confidence 45999887665 445667777 8888888887765322 2334444555544
No 499
>PRK08339 short chain dehydrogenase; Provisional
Probab=47.61 E-value=1.2e+02 Score=25.02 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=29.1
Q ss_pred CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
+++++|-.|++.| .++..+++.|. +++.++.++..++.+.+.+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~ 53 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIK 53 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHH
Confidence 4677887777665 22334555665 58999999887776655543
No 500
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=47.59 E-value=2.2e+02 Score=25.89 Aligned_cols=39 Identities=28% Similarity=0.436 Sum_probs=25.6
Q ss_pred cEEEEcccc-cHH-HHHHHhcCCCeEEEEeCCHHHHHHHHHH
Q 041459 61 LFLDYGTGS-GIL-GIAAIKFGAAMSVGVDIDPQAIKSAHQN 100 (225)
Q Consensus 61 ~vlDiGcGt-G~~-~~~l~~~~~~~v~~vDi~~~~l~~a~~~ 100 (225)
+|--+|+|. |.. +.++++.| ..|+++|+++.-++..++.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~G-HeVv~vDid~~KV~~ln~g 42 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELG-HEVVCVDIDESKVELLNKG 42 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcC-CeEEEEeCCHHHHHHHhCC
Confidence 344556664 322 34566776 5599999999888776543
Done!