Query 041459
Match_columns 225
No_of_seqs 140 out of 1448
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 12:12:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3grz_A L11 mtase, ribosomal pr 100.0 3.2E-27 1.1E-31 190.3 20.2 197 1-223 1-200 (205)
2 2nxc_A L11 mtase, ribosomal pr 100.0 1.3E-27 4.6E-32 199.8 17.1 188 2-218 66-254 (254)
3 4gek_A TRNA (CMO5U34)-methyltr 99.7 4.7E-17 1.6E-21 136.4 16.1 114 48-186 60-181 (261)
4 3dmg_A Probable ribosomal RNA 99.7 2.6E-16 9E-21 138.6 17.9 167 26-221 197-375 (381)
5 3evz_A Methyltransferase; NYSG 99.7 1.5E-16 5.1E-21 129.7 14.5 150 52-225 49-226 (230)
6 1dus_A MJ0882; hypothetical pr 99.7 7.1E-16 2.4E-20 121.4 18.0 138 57-218 51-193 (194)
7 3p9n_A Possible methyltransfer 99.7 2.4E-16 8.2E-21 125.0 13.0 133 26-185 12-155 (189)
8 4dmg_A Putative uncharacterize 99.7 8.2E-16 2.8E-20 136.0 17.0 153 22-199 178-343 (393)
9 3mti_A RRNA methylase; SAM-dep 99.7 9.9E-16 3.4E-20 120.7 15.8 119 43-185 7-137 (185)
10 2frn_A Hypothetical protein PH 99.7 5.8E-16 2E-20 130.7 14.0 148 23-198 93-246 (278)
11 2igt_A SAM dependent methyltra 99.7 9.5E-16 3.3E-20 132.7 15.0 157 24-199 116-290 (332)
12 3e05_A Precorrin-6Y C5,15-meth 99.7 2.8E-15 9.5E-20 120.2 16.2 120 56-199 38-158 (204)
13 3njr_A Precorrin-6Y methylase; 99.7 3.7E-15 1.3E-19 120.1 16.1 118 56-199 53-170 (204)
14 3lpm_A Putative methyltransfer 99.7 2E-15 6.8E-20 125.8 14.5 120 58-199 49-191 (259)
15 3dlc_A Putative S-adenosyl-L-m 99.7 2E-15 6.8E-20 121.2 13.9 103 59-184 44-149 (219)
16 1nv8_A HEMK protein; class I a 99.6 2E-15 6.8E-20 128.0 14.3 144 26-198 92-263 (284)
17 3eey_A Putative rRNA methylase 99.6 5E-15 1.7E-19 117.8 15.8 120 44-185 8-141 (197)
18 2b78_A Hypothetical protein SM 99.6 3.6E-15 1.2E-19 131.5 16.3 157 24-198 178-347 (385)
19 3k6r_A Putative transferase PH 99.6 1.1E-15 3.6E-20 129.2 11.7 136 21-185 91-227 (278)
20 2ift_A Putative methylase HI07 99.6 8E-16 2.7E-20 123.7 10.3 110 58-187 53-167 (201)
21 2b3t_A Protein methyltransfera 99.6 1.7E-14 5.7E-19 121.2 18.8 149 27-204 80-259 (276)
22 3c0k_A UPF0064 protein YCCW; P 99.6 2.1E-15 7.1E-20 133.4 13.4 143 24-186 187-342 (396)
23 4dcm_A Ribosomal RNA large sub 99.6 1E-14 3.4E-19 128.3 17.0 164 26-217 192-366 (375)
24 3kkz_A Uncharacterized protein 99.6 3.1E-15 1E-19 124.7 13.0 106 56-184 44-151 (267)
25 2as0_A Hypothetical protein PH 99.6 5.3E-15 1.8E-19 130.7 14.7 141 25-185 185-337 (396)
26 3v97_A Ribosomal RNA large sub 99.6 4.9E-15 1.7E-19 139.7 15.3 142 22-185 504-659 (703)
27 3dh0_A SAM dependent methyltra 99.6 1.3E-14 4.5E-19 117.0 15.7 142 56-221 35-195 (219)
28 2esr_A Methyltransferase; stru 99.6 1.3E-15 4.6E-20 119.2 9.5 109 57-187 30-142 (177)
29 3hem_A Cyclopropane-fatty-acyl 99.6 8E-15 2.7E-19 124.5 15.0 106 56-188 70-188 (302)
30 2a14_A Indolethylamine N-methy 99.6 3.8E-15 1.3E-19 124.4 12.7 131 57-205 54-235 (263)
31 3ocj_A Putative exported prote 99.6 6.9E-15 2.4E-19 125.2 14.2 146 50-219 110-304 (305)
32 2pjd_A Ribosomal RNA small sub 99.6 7.8E-15 2.7E-19 127.3 14.5 165 27-223 167-341 (343)
33 3kr9_A SAM-dependent methyltra 99.6 8.6E-15 2.9E-19 120.0 13.9 145 49-218 6-156 (225)
34 3a27_A TYW2, uncharacterized p 99.6 5E-15 1.7E-19 124.6 12.8 133 25-186 89-222 (272)
35 1wxx_A TT1595, hypothetical pr 99.6 6.9E-15 2.4E-19 129.5 14.0 140 24-186 177-328 (382)
36 1l3i_A Precorrin-6Y methyltran 99.6 8.5E-15 2.9E-19 114.9 13.0 133 43-199 16-150 (192)
37 3q87_B N6 adenine specific DNA 99.6 7.6E-15 2.6E-19 114.9 12.4 127 41-204 6-145 (170)
38 2fpo_A Methylase YHHF; structu 99.6 3.3E-15 1.1E-19 120.2 10.4 134 26-186 23-163 (202)
39 1vl5_A Unknown conserved prote 99.6 1.3E-14 4.5E-19 120.3 14.3 104 57-185 36-142 (260)
40 3f4k_A Putative methyltransfer 99.6 1.1E-14 3.8E-19 120.2 13.8 106 56-184 44-151 (257)
41 4dzr_A Protein-(glutamine-N5) 99.6 6.5E-16 2.2E-20 123.7 5.8 158 42-220 11-206 (215)
42 1xxl_A YCGJ protein; structura 99.6 2.4E-14 8.4E-19 117.5 15.2 119 41-186 6-127 (239)
43 2ozv_A Hypothetical protein AT 99.6 1.2E-14 4E-19 121.5 13.1 127 57-200 35-186 (260)
44 3hm2_A Precorrin-6Y C5,15-meth 99.6 1.2E-14 4E-19 113.3 12.3 120 56-199 23-143 (178)
45 2fhp_A Methylase, putative; al 99.6 4.6E-15 1.6E-19 116.6 10.0 127 41-186 24-157 (187)
46 3lec_A NADB-rossmann superfami 99.6 2.1E-14 7.3E-19 117.9 14.3 143 49-216 12-160 (230)
47 1ve3_A Hypothetical protein PH 99.6 4.7E-14 1.6E-18 114.1 16.1 110 49-184 29-143 (227)
48 1yzh_A TRNA (guanine-N(7)-)-me 99.6 2.7E-14 9.4E-19 115.3 14.2 120 57-198 40-171 (214)
49 2pxx_A Uncharacterized protein 99.6 2.8E-14 9.6E-19 114.2 14.0 115 46-186 30-162 (215)
50 3dxy_A TRNA (guanine-N(7)-)-me 99.6 7.1E-15 2.4E-19 119.9 9.9 121 57-198 33-165 (218)
51 1pjz_A Thiopurine S-methyltran 99.6 1.7E-14 5.9E-19 116.0 11.8 109 50-181 13-138 (203)
52 1ws6_A Methyltransferase; stru 99.6 4.4E-15 1.5E-19 114.9 7.9 110 58-189 41-153 (171)
53 1nkv_A Hypothetical protein YJ 99.6 3.6E-14 1.2E-18 117.1 13.9 104 56-183 34-140 (256)
54 2yx1_A Hypothetical protein MJ 99.6 1.9E-14 6.6E-19 124.6 12.6 144 22-198 162-305 (336)
55 3gnl_A Uncharacterized protein 99.6 5.2E-14 1.8E-18 116.6 14.5 129 49-202 12-143 (244)
56 3e23_A Uncharacterized protein 99.6 6.2E-14 2.1E-18 112.6 14.6 135 56-222 41-205 (211)
57 1xdz_A Methyltransferase GIDB; 99.6 2.6E-14 8.8E-19 117.7 12.4 142 57-220 69-220 (240)
58 3bus_A REBM, methyltransferase 99.6 5.8E-14 2E-18 117.0 14.6 107 56-185 59-168 (273)
59 2ex4_A Adrenal gland protein A 99.6 2.4E-14 8.3E-19 117.5 12.1 125 58-206 79-223 (241)
60 3jwh_A HEN1; methyltransferase 99.6 8.4E-14 2.9E-18 112.4 15.0 105 57-183 28-141 (217)
61 4hg2_A Methyltransferase type 99.6 1.6E-14 5.4E-19 120.8 10.6 109 46-185 27-137 (257)
62 2yxd_A Probable cobalt-precorr 99.6 6.1E-14 2.1E-18 109.4 13.2 129 42-199 17-147 (183)
63 3adn_A Spermidine synthase; am 99.6 1.1E-13 3.7E-18 117.9 15.6 142 58-220 83-246 (294)
64 4fsd_A Arsenic methyltransfera 99.5 4E-14 1.4E-18 124.5 13.1 114 56-185 81-205 (383)
65 3pfg_A N-methyltransferase; N, 99.5 1.5E-13 5.2E-18 114.0 15.9 106 46-182 38-150 (263)
66 3jwg_A HEN1, methyltransferase 99.5 1.1E-13 3.8E-18 111.7 14.6 117 44-182 13-140 (219)
67 3fpf_A Mtnas, putative unchara 99.5 2.3E-14 8E-19 121.7 11.0 102 56-183 120-222 (298)
68 3g5l_A Putative S-adenosylmeth 99.5 7E-14 2.4E-18 115.3 13.6 98 58-182 44-144 (253)
69 3hnr_A Probable methyltransfer 99.5 1.6E-13 5.5E-18 110.7 15.4 98 58-185 45-147 (220)
70 2o57_A Putative sarcosine dime 99.5 8.2E-14 2.8E-18 117.6 14.2 105 57-184 81-188 (297)
71 4htf_A S-adenosylmethionine-de 99.5 6.6E-14 2.3E-18 117.7 13.4 111 51-184 61-174 (285)
72 2xvm_A Tellurite resistance pr 99.5 1.1E-13 3.9E-18 109.5 14.0 100 58-183 32-136 (199)
73 3h2b_A SAM-dependent methyltra 99.5 1.5E-13 5E-18 109.6 14.7 124 58-211 41-185 (203)
74 3cgg_A SAM-dependent methyltra 99.5 2.9E-13 1E-17 106.3 16.3 122 51-202 39-169 (195)
75 3vc1_A Geranyl diphosphate 2-C 99.5 6.2E-14 2.1E-18 119.7 12.9 105 57-184 116-222 (312)
76 3dtn_A Putative methyltransfer 99.5 2.1E-13 7.3E-18 111.0 15.4 106 57-189 43-154 (234)
77 1zx0_A Guanidinoacetate N-meth 99.5 2.5E-14 8.6E-19 117.3 9.8 106 56-184 58-171 (236)
78 3sm3_A SAM-dependent methyltra 99.5 8E-14 2.7E-18 113.0 12.7 111 52-185 24-143 (235)
79 1xtp_A LMAJ004091AAA; SGPP, st 99.5 6.6E-14 2.3E-18 115.2 12.1 129 57-211 92-241 (254)
80 3ntv_A MW1564 protein; rossman 99.5 1.7E-13 5.8E-18 112.3 14.5 107 57-184 70-177 (232)
81 3lcc_A Putative methyl chlorid 99.5 1.2E-13 4E-18 112.9 13.3 133 47-204 55-203 (235)
82 1uwv_A 23S rRNA (uracil-5-)-me 99.5 8.7E-14 3E-18 124.4 13.5 154 25-200 252-406 (433)
83 2fca_A TRNA (guanine-N(7)-)-me 99.5 7.7E-14 2.6E-18 113.1 11.9 119 58-198 38-168 (213)
84 3m70_A Tellurite resistance pr 99.5 1.6E-13 5.5E-18 115.4 14.3 109 46-183 110-223 (286)
85 2jjq_A Uncharacterized RNA met 99.5 9.3E-14 3.2E-18 124.0 13.5 131 25-186 259-390 (425)
86 1iy9_A Spermidine synthase; ro 99.5 8.1E-14 2.8E-18 117.5 12.0 141 58-219 75-236 (275)
87 3ujc_A Phosphoethanolamine N-m 99.5 4.8E-14 1.6E-18 116.6 10.5 104 56-185 53-161 (266)
88 1kpg_A CFA synthase;, cyclopro 99.5 1.9E-13 6.6E-18 114.8 14.3 104 56-186 62-171 (287)
89 3tma_A Methyltransferase; thum 99.5 6.2E-14 2.1E-18 121.9 11.5 105 56-184 201-318 (354)
90 3i9f_A Putative type 11 methyl 99.5 1E-13 3.6E-18 107.5 11.6 131 56-220 15-161 (170)
91 3tfw_A Putative O-methyltransf 99.5 1.5E-13 5.2E-18 113.8 13.3 109 57-185 62-172 (248)
92 3g5t_A Trans-aconitate 3-methy 99.5 2.9E-13 1E-17 114.6 15.4 118 48-182 25-148 (299)
93 1fbn_A MJ fibrillarin homologu 99.5 3.4E-13 1.2E-17 110.2 15.1 104 56-182 72-177 (230)
94 3l8d_A Methyltransferase; stru 99.5 1.5E-13 5.2E-18 112.2 12.9 110 47-184 42-154 (242)
95 1inl_A Spermidine synthase; be 99.5 9.1E-14 3.1E-18 118.4 11.8 141 58-219 90-252 (296)
96 3u81_A Catechol O-methyltransf 99.5 2.4E-13 8.2E-18 110.4 13.8 123 58-198 58-185 (221)
97 3orh_A Guanidinoacetate N-meth 99.5 4.9E-14 1.7E-18 116.0 9.7 104 56-182 58-169 (236)
98 3ofk_A Nodulation protein S; N 99.5 1.7E-13 5.7E-18 110.4 12.6 98 58-183 51-154 (216)
99 1jsx_A Glucose-inhibited divis 99.5 1.2E-13 4E-18 110.5 11.4 112 58-196 65-177 (207)
100 2i62_A Nicotinamide N-methyltr 99.5 2E-13 7E-18 112.8 13.2 131 57-205 55-236 (265)
101 1ri5_A MRNA capping enzyme; me 99.5 3.1E-13 1E-17 113.6 14.5 107 56-184 62-175 (298)
102 3dr5_A Putative O-methyltransf 99.5 1.2E-13 4E-18 112.8 11.5 122 43-184 39-164 (221)
103 4hc4_A Protein arginine N-meth 99.5 1E-13 3.6E-18 121.6 11.6 99 58-181 83-187 (376)
104 1y8c_A S-adenosylmethionine-de 99.5 3.3E-13 1.1E-17 110.1 13.8 98 58-182 37-141 (246)
105 3mb5_A SAM-dependent methyltra 99.5 2.5E-13 8.5E-18 112.2 13.1 118 56-199 91-210 (255)
106 2gb4_A Thiopurine S-methyltran 99.5 1.8E-13 6.1E-18 114.0 12.2 104 57-182 67-190 (252)
107 2fk8_A Methoxy mycolic acid sy 99.5 4.5E-13 1.5E-17 114.4 14.7 106 56-188 88-199 (318)
108 3tr6_A O-methyltransferase; ce 99.5 1.6E-13 5.6E-18 111.2 11.4 111 58-185 64-176 (225)
109 2kw5_A SLR1183 protein; struct 99.5 4.3E-13 1.5E-17 106.8 13.7 101 57-184 29-132 (202)
110 2p8j_A S-adenosylmethionine-de 99.5 3.2E-13 1.1E-17 107.9 12.8 105 56-185 21-130 (209)
111 3mgg_A Methyltransferase; NYSG 99.5 3.3E-13 1.1E-17 112.7 13.3 104 56-183 35-142 (276)
112 3ckk_A TRNA (guanine-N(7)-)-me 99.5 3.2E-13 1.1E-17 111.3 13.0 119 57-196 45-181 (235)
113 2p7i_A Hypothetical protein; p 99.5 3.9E-13 1.3E-17 109.6 13.4 109 47-186 32-144 (250)
114 2gs9_A Hypothetical protein TT 99.5 3.4E-13 1.2E-17 108.1 12.8 109 48-188 26-137 (211)
115 3q7e_A Protein arginine N-meth 99.5 2.2E-13 7.4E-18 118.5 12.4 102 56-181 64-171 (349)
116 3r3h_A O-methyltransferase, SA 99.5 9.5E-14 3.3E-18 114.9 9.6 111 58-185 60-172 (242)
117 1mjf_A Spermidine synthase; sp 99.5 2.1E-13 7.3E-18 115.2 11.7 140 57-219 74-239 (281)
118 3g89_A Ribosomal RNA small sub 99.5 1.2E-13 4.1E-18 114.8 9.9 119 58-198 80-201 (249)
119 3duw_A OMT, O-methyltransferas 99.5 2.9E-13 1E-17 109.6 12.0 111 57-185 57-169 (223)
120 3lbf_A Protein-L-isoaspartate 99.5 1.9E-13 6.6E-18 109.6 10.6 102 56-185 75-176 (210)
121 3ccf_A Cyclopropane-fatty-acyl 99.5 6.4E-13 2.2E-17 111.4 14.2 105 57-192 56-163 (279)
122 3g07_A 7SK snRNA methylphospha 99.5 3E-13 1E-17 114.6 12.3 48 58-105 46-94 (292)
123 2yqz_A Hypothetical protein TT 99.5 3.7E-13 1.3E-17 111.1 12.4 101 56-182 37-140 (263)
124 3ggd_A SAM-dependent methyltra 99.5 2.5E-13 8.5E-18 111.5 11.2 110 56-188 54-168 (245)
125 3bwc_A Spermidine synthase; SA 99.5 4.9E-13 1.7E-17 114.2 13.4 143 57-219 94-258 (304)
126 2fyt_A Protein arginine N-meth 99.5 6.4E-13 2.2E-17 115.2 14.3 101 56-180 62-168 (340)
127 3iv6_A Putative Zn-dependent a 99.5 7.1E-13 2.4E-17 111.0 14.0 104 56-187 43-152 (261)
128 3ou2_A SAM-dependent methyltra 99.5 2.2E-12 7.5E-17 103.4 16.2 99 56-184 44-147 (218)
129 2vdw_A Vaccinia virus capping 99.5 2.7E-13 9.2E-18 115.8 11.4 113 58-184 48-170 (302)
130 1o9g_A RRNA methyltransferase; 99.5 1.3E-13 4.3E-18 114.1 9.1 111 58-185 51-216 (250)
131 3bgv_A MRNA CAP guanine-N7 met 99.5 4.9E-13 1.7E-17 114.1 12.7 113 57-186 33-158 (313)
132 2b25_A Hypothetical protein; s 99.5 4E-13 1.4E-17 115.9 12.3 143 56-220 103-261 (336)
133 2pt6_A Spermidine synthase; tr 99.5 4.3E-13 1.5E-17 115.5 12.4 141 58-219 116-277 (321)
134 1g6q_1 HnRNP arginine N-methyl 99.5 8.3E-13 2.8E-17 113.9 14.2 101 57-181 37-143 (328)
135 3tm4_A TRNA (guanine N2-)-meth 99.5 7.9E-13 2.7E-17 116.0 14.1 139 56-222 215-369 (373)
136 3bkw_A MLL3908 protein, S-aden 99.5 5.5E-13 1.9E-17 108.8 12.1 99 58-183 43-144 (243)
137 3r0q_C Probable protein argini 99.5 3.9E-13 1.3E-17 118.1 11.8 101 57-182 62-168 (376)
138 3bzb_A Uncharacterized protein 99.5 1.3E-12 4.4E-17 110.3 14.4 159 38-212 57-241 (281)
139 2p35_A Trans-aconitate 2-methy 99.5 1.4E-12 4.7E-17 107.5 14.4 107 49-185 23-134 (259)
140 1yb2_A Hypothetical protein TA 99.5 2.7E-13 9.1E-18 113.9 10.2 117 56-199 108-227 (275)
141 2gpy_A O-methyltransferase; st 99.5 5.4E-13 1.9E-17 108.9 11.7 108 57-184 53-161 (233)
142 3thr_A Glycine N-methyltransfe 99.5 4.7E-13 1.6E-17 112.7 11.7 108 57-184 56-176 (293)
143 3d2l_A SAM-dependent methyltra 99.5 1.2E-12 4.2E-17 106.7 13.7 109 47-183 22-137 (243)
144 1uir_A Polyamine aminopropyltr 99.4 3.8E-13 1.3E-17 115.4 11.0 142 57-219 76-242 (314)
145 2vdv_E TRNA (guanine-N(7)-)-me 99.4 8.5E-13 2.9E-17 109.0 12.7 106 57-183 48-173 (246)
146 2ipx_A RRNA 2'-O-methyltransfe 99.4 6.8E-13 2.3E-17 108.4 12.0 106 56-184 75-183 (233)
147 3uwp_A Histone-lysine N-methyl 99.4 6.9E-13 2.3E-17 117.1 12.7 110 56-185 171-290 (438)
148 2pwy_A TRNA (adenine-N(1)-)-me 99.4 8.4E-13 2.9E-17 108.9 12.6 118 56-199 94-214 (258)
149 3m33_A Uncharacterized protein 99.4 3.9E-13 1.3E-17 109.5 10.4 119 46-198 36-156 (226)
150 4df3_A Fibrillarin-like rRNA/T 99.4 4.6E-13 1.6E-17 110.3 10.8 104 56-182 75-181 (233)
151 3ajd_A Putative methyltransfer 99.4 1.9E-13 6.4E-18 115.0 8.5 108 56-183 81-211 (274)
152 3dli_A Methyltransferase; PSI- 99.4 6.5E-13 2.2E-17 108.9 11.6 102 56-188 39-145 (240)
153 3gu3_A Methyltransferase; alph 99.4 9.4E-13 3.2E-17 110.9 12.8 103 57-185 21-128 (284)
154 2g72_A Phenylethanolamine N-me 99.4 6.8E-13 2.3E-17 111.8 11.6 128 58-202 71-250 (289)
155 1ixk_A Methyltransferase; open 99.4 8.9E-13 3E-17 113.1 12.3 104 56-183 116-246 (315)
156 1g8a_A Fibrillarin-like PRE-rR 99.4 1.9E-12 6.3E-17 105.2 13.6 104 56-182 71-177 (227)
157 3c3p_A Methyltransferase; NP_9 99.4 7E-13 2.4E-17 106.6 10.9 104 58-184 56-161 (210)
158 2y1w_A Histone-arginine methyl 99.4 8.4E-13 2.9E-17 114.7 12.2 101 57-182 49-154 (348)
159 3fzg_A 16S rRNA methylase; met 99.4 1E-12 3.4E-17 104.7 11.2 102 56-183 47-152 (200)
160 3gdh_A Trimethylguanosine synt 99.4 1.4E-14 4.8E-19 118.8 0.5 100 58-182 78-180 (241)
161 2avn_A Ubiquinone/menaquinone 99.4 2E-12 6.7E-17 107.4 13.5 107 48-185 44-154 (260)
162 1wzn_A SAM-dependent methyltra 99.4 3E-12 1E-16 105.3 14.5 99 57-182 40-144 (252)
163 1i9g_A Hypothetical protein RV 99.4 1.3E-12 4.4E-17 109.4 12.4 118 56-198 97-218 (280)
164 1nt2_A Fibrillarin-like PRE-rR 99.4 1.5E-12 5E-17 105.5 12.3 104 56-182 55-160 (210)
165 1o54_A SAM-dependent O-methylt 99.4 1.1E-12 3.8E-17 110.1 11.9 118 56-199 110-229 (277)
166 2yvl_A TRMI protein, hypotheti 99.4 1E-12 3.5E-17 107.8 11.4 116 56-197 89-204 (248)
167 3bxo_A N,N-dimethyltransferase 99.4 1.8E-12 6.3E-17 105.4 12.7 107 47-184 29-142 (239)
168 3g2m_A PCZA361.24; SAM-depende 99.4 2.3E-12 7.9E-17 109.1 13.7 115 48-186 72-193 (299)
169 1sui_A Caffeoyl-COA O-methyltr 99.4 8.5E-13 2.9E-17 109.4 10.7 110 58-183 79-190 (247)
170 2hnk_A SAM-dependent O-methylt 99.4 9.8E-13 3.3E-17 108.0 10.9 120 57-184 59-182 (239)
171 3hp7_A Hemolysin, putative; st 99.4 2.7E-14 9.4E-19 121.2 1.5 108 49-182 74-184 (291)
172 3id6_C Fibrillarin-like rRNA/T 99.4 4.6E-12 1.6E-16 104.3 14.7 104 56-182 74-180 (232)
173 1xj5_A Spermidine synthase 1; 99.4 2.1E-12 7.1E-17 111.8 13.1 143 57-219 119-283 (334)
174 3p2e_A 16S rRNA methylase; met 99.4 4.4E-13 1.5E-17 109.7 8.4 106 53-181 19-137 (225)
175 2o07_A Spermidine synthase; st 99.4 1.7E-12 6E-17 110.9 12.2 142 57-219 94-256 (304)
176 3htx_A HEN1; HEN1, small RNA m 99.4 3E-12 1E-16 121.0 14.4 130 32-184 693-835 (950)
177 1vbf_A 231AA long hypothetical 99.4 1.2E-12 4.1E-17 106.5 10.4 99 56-184 68-166 (231)
178 3ege_A Putative methyltransfer 99.4 9.7E-13 3.3E-17 109.4 10.0 96 57-184 33-131 (261)
179 3bkx_A SAM-dependent methyltra 99.4 3.4E-12 1.2E-16 106.3 13.4 110 56-185 41-161 (275)
180 1wy7_A Hypothetical protein PH 99.4 2.9E-12 9.8E-17 102.5 12.3 96 57-183 48-148 (207)
181 3b3j_A Histone-arginine methyl 99.4 2.6E-12 8.9E-17 116.3 13.4 100 57-181 157-261 (480)
182 3bt7_A TRNA (uracil-5-)-methyl 99.4 1.7E-12 6E-17 113.6 11.9 154 27-193 182-337 (369)
183 3c3y_A Pfomt, O-methyltransfer 99.4 1.9E-12 6.5E-17 106.5 11.4 111 58-184 70-182 (237)
184 2b2c_A Spermidine synthase; be 99.4 2.2E-12 7.4E-17 110.8 12.1 142 57-219 107-269 (314)
185 2yxe_A Protein-L-isoaspartate 99.4 1.6E-12 5.6E-17 104.5 10.4 102 56-184 75-178 (215)
186 2avd_A Catechol-O-methyltransf 99.4 1.8E-12 6.1E-17 105.3 10.7 111 57-184 68-180 (229)
187 1u2z_A Histone-lysine N-methyl 99.4 7.1E-12 2.4E-16 111.8 15.3 111 56-184 240-360 (433)
188 2pbf_A Protein-L-isoaspartate 99.4 1.1E-12 3.9E-17 106.4 9.4 117 47-184 69-194 (227)
189 1ej0_A FTSJ; methyltransferase 99.4 1.1E-12 3.7E-17 101.2 8.6 121 56-204 20-157 (180)
190 3dou_A Ribosomal RNA large sub 99.4 6.4E-12 2.2E-16 100.2 13.4 124 56-204 23-160 (191)
191 1jg1_A PIMT;, protein-L-isoasp 99.4 2.4E-12 8.1E-17 105.4 11.1 103 56-185 89-191 (235)
192 3cbg_A O-methyltransferase; cy 99.4 2.1E-12 7.2E-17 105.8 10.7 109 58-185 72-184 (232)
193 1dl5_A Protein-L-isoaspartate 99.4 1.7E-12 5.8E-17 111.3 10.6 103 56-185 73-177 (317)
194 3gjy_A Spermidine synthase; AP 99.4 3.3E-12 1.1E-16 109.6 12.1 143 41-205 67-225 (317)
195 2h00_A Methyltransferase 10 do 99.4 9.7E-13 3.3E-17 108.8 8.2 83 58-160 65-151 (254)
196 1ne2_A Hypothetical protein TA 99.4 8.3E-12 2.8E-16 99.4 13.3 92 57-183 50-146 (200)
197 1i1n_A Protein-L-isoaspartate 99.4 1.5E-12 5.2E-17 105.6 9.1 113 47-184 66-183 (226)
198 2r3s_A Uncharacterized protein 99.4 2.7E-11 9.1E-16 103.8 16.6 104 57-185 164-273 (335)
199 1p91_A Ribosomal RNA large sub 99.4 5.2E-12 1.8E-16 105.1 11.8 115 46-193 72-188 (269)
200 3mcz_A O-methyltransferase; ad 99.4 2.6E-11 8.8E-16 104.9 16.3 103 59-184 180-288 (352)
201 2qm3_A Predicted methyltransfe 99.4 9.4E-12 3.2E-16 109.1 13.7 103 58-184 172-279 (373)
202 3cc8_A Putative methyltransfer 99.3 9.9E-12 3.4E-16 100.1 12.4 102 57-188 31-135 (230)
203 2cmg_A Spermidine synthase; tr 99.3 4.9E-12 1.7E-16 105.9 10.9 134 58-219 72-216 (262)
204 3opn_A Putative hemolysin; str 99.3 3.5E-13 1.2E-17 110.9 3.7 100 58-182 37-136 (232)
205 2plw_A Ribosomal RNA methyltra 99.3 1.1E-11 3.7E-16 98.5 12.2 132 56-201 20-172 (201)
206 1qzz_A RDMB, aclacinomycin-10- 99.3 3.1E-11 1.1E-15 105.1 16.2 102 57-184 181-288 (374)
207 3mq2_A 16S rRNA methyltransfer 99.3 3.7E-12 1.3E-16 102.7 9.4 102 56-182 25-139 (218)
208 2f8l_A Hypothetical protein LM 99.3 6.2E-12 2.1E-16 108.9 11.2 116 58-199 130-276 (344)
209 3e8s_A Putative SAM dependent 99.3 5.6E-12 1.9E-16 101.4 10.2 101 57-184 51-153 (227)
210 2aot_A HMT, histamine N-methyl 99.3 2.7E-12 9.1E-17 108.5 8.6 111 58-184 52-173 (292)
211 1x19_A CRTF-related protein; m 99.3 3.3E-11 1.1E-15 104.7 15.7 102 57-184 189-296 (359)
212 2yxl_A PH0851 protein, 450AA l 99.3 1.3E-11 4.3E-16 110.9 13.3 121 56-198 257-407 (450)
213 3gwz_A MMCR; methyltransferase 99.3 5.6E-11 1.9E-15 103.8 17.0 103 57-185 201-309 (369)
214 3i53_A O-methyltransferase; CO 99.3 4.9E-11 1.7E-15 102.4 16.4 102 58-185 169-276 (332)
215 2frx_A Hypothetical protein YE 99.3 1.9E-11 6.6E-16 110.5 14.2 103 58-183 117-246 (479)
216 3dp7_A SAM-dependent methyltra 99.3 4.8E-11 1.6E-15 104.0 16.2 105 57-184 178-288 (363)
217 3m4x_A NOL1/NOP2/SUN family pr 99.3 3.1E-12 1.1E-16 114.9 8.5 104 56-182 103-233 (456)
218 2dul_A N(2),N(2)-dimethylguano 99.3 4.4E-12 1.5E-16 111.5 9.1 103 58-184 47-165 (378)
219 3m6w_A RRNA methylase; rRNA me 99.3 3.6E-12 1.2E-16 114.7 8.7 103 56-182 99-228 (464)
220 2i7c_A Spermidine synthase; tr 99.3 1.5E-11 5.1E-16 103.9 12.1 142 57-219 77-239 (283)
221 1vlm_A SAM-dependent methyltra 99.3 1.9E-11 6.5E-16 98.8 12.2 99 50-185 40-141 (219)
222 1sqg_A SUN protein, FMU protei 99.3 1.6E-11 5.6E-16 109.5 12.9 120 56-198 244-392 (429)
223 2okc_A Type I restriction enzy 99.3 9.4E-12 3.2E-16 111.5 11.4 121 40-183 151-307 (445)
224 1r18_A Protein-L-isoaspartate( 99.3 2.5E-12 8.6E-17 104.6 7.0 112 46-184 72-195 (227)
225 2bm8_A Cephalosporin hydroxyla 99.3 5E-12 1.7E-16 104.1 8.8 102 58-184 81-188 (236)
226 2zfu_A Nucleomethylin, cerebra 99.3 2.2E-11 7.7E-16 97.8 12.4 123 57-222 66-194 (215)
227 1tw3_A COMT, carminomycin 4-O- 99.3 5.4E-11 1.9E-15 103.1 15.6 103 57-185 182-290 (360)
228 3axs_A Probable N(2),N(2)-dime 99.3 3.5E-12 1.2E-16 112.5 7.8 105 57-184 51-159 (392)
229 1zq9_A Probable dimethyladenos 99.3 1.5E-11 5.2E-16 104.0 10.9 99 56-180 26-144 (285)
230 3lcv_B Sisomicin-gentamicin re 99.3 7.8E-11 2.7E-15 98.0 14.3 134 41-201 108-256 (281)
231 2nyu_A Putative ribosomal RNA 99.3 4.5E-11 1.5E-15 94.4 11.7 120 56-202 20-164 (196)
232 3k0b_A Predicted N6-adenine-sp 99.3 6.8E-11 2.3E-15 104.4 14.0 103 56-182 199-349 (393)
233 2wa2_A Non-structural protein 99.3 2.7E-12 9.4E-17 108.3 4.2 117 56-201 80-213 (276)
234 2oxt_A Nucleoside-2'-O-methylt 99.2 3.3E-12 1.1E-16 107.2 4.4 116 56-200 72-204 (265)
235 2ip2_A Probable phenazine-spec 99.2 2.1E-10 7.1E-15 98.5 15.6 100 60-185 169-274 (334)
236 3ldu_A Putative methylase; str 99.2 8.9E-11 3E-15 103.4 13.3 102 57-182 194-343 (385)
237 2qe6_A Uncharacterized protein 99.2 3.6E-10 1.2E-14 95.0 16.4 111 59-187 78-200 (274)
238 1af7_A Chemotaxis receptor met 99.2 7E-11 2.4E-15 99.5 11.9 104 58-182 105-251 (274)
239 3ldg_A Putative uncharacterize 99.2 1.2E-10 4.2E-15 102.4 13.9 103 56-182 192-342 (384)
240 4e2x_A TCAB9; kijanose, tetron 99.2 6.8E-12 2.3E-16 111.0 4.9 100 57-183 106-208 (416)
241 3sso_A Methyltransferase; macr 99.2 6.4E-11 2.2E-15 104.3 10.6 115 44-185 202-326 (419)
242 3frh_A 16S rRNA methylase; met 99.2 3.2E-10 1.1E-14 93.4 14.0 115 41-183 82-206 (253)
243 2h1r_A Dimethyladenosine trans 99.2 1.3E-10 4.3E-15 99.0 11.8 84 56-166 40-123 (299)
244 2ih2_A Modification methylase 99.2 6.6E-11 2.3E-15 104.5 9.9 125 41-199 20-184 (421)
245 3gru_A Dimethyladenosine trans 99.2 3.2E-10 1.1E-14 96.4 12.9 90 56-172 48-137 (295)
246 2p41_A Type II methyltransfera 99.2 6.1E-11 2.1E-15 101.3 8.2 115 56-200 80-210 (305)
247 4azs_A Methyltransferase WBDD; 99.1 8.7E-11 3E-15 108.3 9.2 106 56-184 64-174 (569)
248 2qfm_A Spermine synthase; sper 99.1 2.3E-10 8E-15 99.5 10.6 143 58-219 188-361 (364)
249 2b9e_A NOL1/NOP2/SUN domain fa 99.1 5E-10 1.7E-14 95.8 12.2 121 56-198 100-252 (309)
250 3lst_A CALO1 methyltransferase 99.1 7.3E-10 2.5E-14 95.9 12.0 99 57-184 183-287 (348)
251 3tqs_A Ribosomal RNA small sub 99.1 2.1E-09 7.2E-14 89.5 13.6 93 56-172 27-119 (255)
252 2ar0_A M.ecoki, type I restric 99.1 3E-10 1E-14 104.2 9.0 138 40-198 149-332 (541)
253 4a6d_A Hydroxyindole O-methylt 99.0 6.5E-09 2.2E-13 90.3 15.9 100 58-184 179-284 (353)
254 3lkd_A Type I restriction-modi 99.0 9.1E-10 3.1E-14 100.9 10.6 141 39-198 196-378 (542)
255 3cvo_A Methyltransferase-like 99.0 8.6E-09 2.9E-13 82.8 14.1 124 50-183 22-154 (202)
256 3giw_A Protein of unknown func 99.0 1.8E-09 6E-14 90.7 10.3 115 60-187 80-204 (277)
257 1qam_A ERMC' methyltransferase 99.0 5.7E-09 1.9E-13 86.1 13.3 95 56-177 28-122 (244)
258 2xyq_A Putative 2'-O-methyl tr 99.0 1.1E-09 3.7E-14 92.9 8.7 110 56-204 61-193 (290)
259 3v97_A Ribosomal RNA large sub 99.0 3.3E-09 1.1E-13 100.0 12.8 104 57-181 189-345 (703)
260 3khk_A Type I restriction-modi 98.9 1.5E-09 5.2E-14 99.5 8.1 139 39-199 224-417 (544)
261 1yub_A Ermam, rRNA methyltrans 98.9 3.5E-11 1.2E-15 99.4 -2.7 99 56-181 27-143 (245)
262 3fut_A Dimethyladenosine trans 98.9 3.9E-09 1.3E-13 88.6 9.5 89 56-172 45-133 (271)
263 3s1s_A Restriction endonucleas 98.9 6E-09 2.1E-13 98.4 11.4 120 58-198 321-486 (878)
264 3o4f_A Spermidine synthase; am 98.9 4.6E-08 1.6E-12 82.8 15.8 143 57-220 82-246 (294)
265 3reo_A (ISO)eugenol O-methyltr 98.9 5E-09 1.7E-13 91.5 10.0 94 58-185 203-302 (368)
266 3ftd_A Dimethyladenosine trans 98.9 9.7E-09 3.3E-13 85.2 11.1 99 56-181 29-129 (249)
267 3p9c_A Caffeic acid O-methyltr 98.9 7.6E-09 2.6E-13 90.2 10.0 94 58-185 201-300 (364)
268 1fp1_D Isoliquiritigenin 2'-O- 98.9 4.9E-09 1.7E-13 91.4 8.7 94 57-184 208-307 (372)
269 1fp2_A Isoflavone O-methyltran 98.9 7E-09 2.4E-13 89.8 9.2 95 57-185 187-290 (352)
270 2ld4_A Anamorsin; methyltransf 98.8 2.2E-09 7.4E-14 83.5 5.1 105 56-200 10-128 (176)
271 2r6z_A UPF0341 protein in RSP 98.8 1.1E-09 3.7E-14 91.4 3.4 83 57-161 82-173 (258)
272 3ll7_A Putative methyltransfer 98.8 4E-09 1.4E-13 93.4 7.2 83 56-161 91-175 (410)
273 4gqb_A Protein arginine N-meth 98.8 1.1E-08 3.8E-13 94.9 10.2 98 59-181 358-465 (637)
274 1zg3_A Isoflavanone 4'-O-methy 98.8 3.3E-08 1.1E-12 85.7 11.3 95 57-185 192-295 (358)
275 3uzu_A Ribosomal RNA small sub 98.8 3.5E-08 1.2E-12 83.2 10.9 93 56-172 40-137 (279)
276 1m6y_A S-adenosyl-methyltransf 98.7 2.1E-08 7.3E-13 85.4 7.9 85 56-160 24-109 (301)
277 4fzv_A Putative methyltransfer 98.7 7.5E-08 2.6E-12 83.9 11.1 107 55-182 145-283 (359)
278 3ufb_A Type I restriction-modi 98.7 1.4E-07 4.6E-12 86.3 12.6 141 39-199 196-383 (530)
279 2wk1_A NOVP; transferase, O-me 98.7 5.9E-07 2E-11 75.7 15.4 140 58-219 106-281 (282)
280 3evf_A RNA-directed RNA polyme 98.7 2.2E-07 7.5E-12 77.6 11.9 123 56-204 72-207 (277)
281 1qyr_A KSGA, high level kasuga 98.7 6.7E-08 2.3E-12 80.2 8.5 94 56-171 19-112 (252)
282 3ua3_A Protein arginine N-meth 98.6 5.1E-08 1.7E-12 90.9 7.9 104 59-181 410-532 (745)
283 3c6k_A Spermine synthase; sper 98.6 2.2E-07 7.6E-12 81.1 9.4 146 57-220 204-379 (381)
284 3gcz_A Polyprotein; flavivirus 98.6 5E-08 1.7E-12 81.6 5.0 123 56-204 88-224 (282)
285 2oyr_A UPF0341 protein YHIQ; a 98.4 1.6E-07 5.4E-12 78.3 5.0 97 57-176 85-193 (258)
286 3eld_A Methyltransferase; flav 98.3 5.9E-06 2E-10 69.5 12.3 124 55-204 78-214 (300)
287 2qy6_A UPF0209 protein YFCK; s 98.2 5.6E-06 1.9E-10 68.8 9.3 143 58-223 60-251 (257)
288 2px2_A Genome polyprotein [con 98.1 2.3E-06 7.7E-11 70.7 5.3 118 55-202 70-204 (269)
289 2oo3_A Protein involved in cat 98.1 2.8E-06 9.6E-11 71.3 5.0 101 58-181 91-196 (283)
290 2zig_A TTHA0409, putative modi 98.1 8.4E-06 2.9E-10 68.9 7.6 57 47-104 224-280 (297)
291 2k4m_A TR8_protein, UPF0146 pr 98.0 2.3E-05 7.9E-10 59.4 8.5 45 51-95 28-73 (153)
292 3lkz_A Non-structural protein 98.0 3E-05 1E-09 65.1 9.8 118 56-200 92-223 (321)
293 1g60_A Adenine-specific methyl 98.0 1.6E-05 5.6E-10 65.8 7.5 60 46-106 200-259 (260)
294 1wg8_A Predicted S-adenosylmet 98.0 1.9E-05 6.4E-10 66.2 7.8 82 56-161 20-101 (285)
295 3p8z_A Mtase, non-structural p 97.9 0.00011 3.6E-09 60.1 11.3 118 55-200 75-205 (267)
296 2efj_A 3,7-dimethylxanthine me 97.9 6.8E-05 2.3E-09 65.7 9.8 107 59-188 53-230 (384)
297 3b5i_A S-adenosyl-L-methionine 97.9 4.7E-05 1.6E-09 66.5 8.8 41 146-186 147-228 (374)
298 3tka_A Ribosomal RNA small sub 97.8 0.0001 3.5E-09 63.3 10.3 43 56-98 55-99 (347)
299 4auk_A Ribosomal RNA large sub 97.7 0.00044 1.5E-08 60.1 12.3 35 56-91 209-243 (375)
300 3r24_A NSP16, 2'-O-methyl tran 97.6 0.00032 1.1E-08 59.0 9.5 106 56-201 107-234 (344)
301 1m6e_X S-adenosyl-L-methionnin 97.4 0.00011 3.7E-09 63.8 3.9 107 60-186 53-212 (359)
302 2c7p_A Modification methylase 97.2 0.0021 7.3E-08 55.0 9.8 44 59-102 11-54 (327)
303 1boo_A Protein (N-4 cytosine-s 97.1 0.00072 2.5E-08 57.7 6.6 60 46-106 240-299 (323)
304 3g7u_A Cytosine-specific methy 97.1 0.0026 8.9E-08 55.5 9.9 43 60-102 3-45 (376)
305 1eg2_A Modification methylase 97.0 0.0012 4.2E-08 56.3 6.5 58 47-105 231-291 (319)
306 1g55_A DNA cytosine methyltran 96.9 0.00084 2.9E-08 57.8 4.8 44 59-102 2-47 (343)
307 1i4w_A Mitochondrial replicati 96.7 0.02 6.9E-07 49.4 12.0 55 59-118 59-114 (353)
308 3tos_A CALS11; methyltransfera 96.6 0.011 3.8E-07 48.8 9.5 55 146-200 179-234 (257)
309 3ubt_Y Modification methylase 96.6 0.01 3.4E-07 50.2 9.3 42 60-101 1-42 (331)
310 1f8f_A Benzyl alcohol dehydrog 96.4 0.0063 2.1E-07 52.4 7.1 101 56-184 188-290 (371)
311 4b7c_A Probable oxidoreductase 96.3 0.028 9.4E-07 47.6 10.1 150 6-184 90-249 (336)
312 3ip1_A Alcohol dehydrogenase, 96.2 0.0078 2.7E-07 52.6 6.7 105 56-184 211-319 (404)
313 3fpc_A NADP-dependent alcohol 96.1 0.0076 2.6E-07 51.5 5.8 101 56-183 164-266 (352)
314 3qv2_A 5-cytosine DNA methyltr 96.0 0.0055 1.9E-07 52.4 4.4 45 58-102 9-56 (327)
315 2dph_A Formaldehyde dismutase; 95.8 0.038 1.3E-06 48.0 8.9 105 56-184 183-300 (398)
316 4ej6_A Putative zinc-binding d 95.7 0.032 1.1E-06 48.0 8.2 104 56-184 180-285 (370)
317 3m6i_A L-arabinitol 4-dehydrog 95.7 0.14 4.7E-06 43.7 12.1 106 56-184 177-284 (363)
318 1v3u_A Leukotriene B4 12- hydr 95.7 0.034 1.2E-06 46.9 8.1 100 56-184 143-245 (333)
319 1pl8_A Human sorbitol dehydrog 95.7 0.075 2.6E-06 45.3 10.2 104 56-184 169-274 (356)
320 2qrv_A DNA (cytosine-5)-methyl 95.7 0.018 6E-07 48.5 6.0 44 58-101 15-60 (295)
321 3uko_A Alcohol dehydrogenase c 95.3 0.061 2.1E-06 46.3 8.5 103 56-184 191-296 (378)
322 4a2c_A Galactitol-1-phosphate 95.2 0.022 7.6E-07 48.2 5.3 103 56-185 158-262 (346)
323 1p0f_A NADP-dependent alcohol 95.2 0.08 2.7E-06 45.4 8.8 103 56-184 189-294 (373)
324 4h0n_A DNMT2; SAH binding, tra 95.2 0.021 7.3E-07 48.8 5.0 43 60-102 4-48 (333)
325 2py6_A Methyltransferase FKBM; 95.1 0.042 1.4E-06 48.2 6.9 47 57-103 225-274 (409)
326 1cdo_A Alcohol dehydrogenase; 95.1 0.077 2.6E-06 45.5 8.5 103 56-184 190-295 (374)
327 2fzw_A Alcohol dehydrogenase c 95.1 0.097 3.3E-06 44.8 9.1 103 56-184 188-293 (373)
328 3uog_A Alcohol dehydrogenase; 95.1 0.0098 3.4E-07 51.1 2.6 100 56-184 187-288 (363)
329 1kol_A Formaldehyde dehydrogen 95.0 0.017 5.8E-07 50.2 4.0 105 56-184 183-301 (398)
330 1e3i_A Alcohol dehydrogenase, 94.9 0.084 2.9E-06 45.3 8.1 103 56-184 193-298 (376)
331 2vz8_A Fatty acid synthase; tr 94.9 0.012 4.2E-07 62.5 3.2 102 57-184 1239-1349(2512)
332 2jhf_A Alcohol dehydrogenase E 94.9 0.12 4E-06 44.4 8.9 103 56-184 189-294 (374)
333 3qwb_A Probable quinone oxidor 94.8 0.017 5.9E-07 48.8 3.3 99 56-183 146-247 (334)
334 3s2e_A Zinc-containing alcohol 94.7 0.1 3.5E-06 44.1 8.1 99 56-184 164-264 (340)
335 3jyn_A Quinone oxidoreductase; 94.7 0.015 5.2E-07 49.0 2.9 100 56-184 138-240 (325)
336 3jv7_A ADH-A; dehydrogenase, n 94.5 0.021 7.1E-07 48.6 3.1 102 55-184 168-271 (345)
337 1pqw_A Polyketide synthase; ro 94.5 0.01 3.5E-07 46.2 1.1 100 56-184 36-138 (198)
338 1vj0_A Alcohol dehydrogenase, 94.5 0.02 6.7E-07 49.6 3.0 105 56-184 193-299 (380)
339 4dvj_A Putative zinc-dependent 94.4 0.052 1.8E-06 46.6 5.6 96 58-182 171-269 (363)
340 3gms_A Putative NADPH:quinone 94.4 0.016 5.5E-07 49.2 2.3 100 56-184 142-244 (340)
341 3nx4_A Putative oxidoreductase 94.4 0.14 4.8E-06 42.8 8.1 91 61-184 149-242 (324)
342 3two_A Mannitol dehydrogenase; 94.4 0.074 2.5E-06 45.2 6.4 94 55-186 173-268 (348)
343 2zb4_A Prostaglandin reductase 94.2 0.24 8.4E-06 42.0 9.3 101 56-184 156-261 (357)
344 1e3j_A NADP(H)-dependent ketos 94.2 0.36 1.2E-05 40.9 10.3 101 56-184 166-272 (352)
345 2d8a_A PH0655, probable L-thre 93.8 0.059 2E-06 45.8 4.7 100 58-184 167-268 (348)
346 2j3h_A NADP-dependent oxidored 93.8 0.22 7.7E-06 42.0 8.3 100 56-183 153-255 (345)
347 2zig_A TTHA0409, putative modi 93.8 0.048 1.6E-06 45.6 3.9 37 146-182 37-96 (297)
348 4dcm_A Ribosomal RNA large sub 93.6 1.2 4.1E-05 38.4 12.7 114 58-200 38-153 (375)
349 2c0c_A Zinc binding alcohol de 93.5 0.13 4.4E-06 44.0 6.2 99 56-184 161-262 (362)
350 3fwz_A Inner membrane protein 93.4 0.83 2.8E-05 33.2 9.9 96 59-182 7-104 (140)
351 1rjw_A ADH-HT, alcohol dehydro 93.3 0.18 6.2E-06 42.6 6.8 99 56-184 162-262 (339)
352 4dup_A Quinone oxidoreductase; 93.3 0.12 4E-06 44.1 5.6 99 56-184 165-266 (353)
353 1boo_A Protein (N-4 cytosine-s 93.2 0.082 2.8E-06 44.8 4.4 37 146-182 30-83 (323)
354 3pvc_A TRNA 5-methylaminomethy 93.1 0.08 2.7E-06 49.4 4.6 35 147-181 169-209 (689)
355 3vyw_A MNMC2; tRNA wobble urid 93.0 0.32 1.1E-05 41.1 7.8 69 147-219 184-260 (308)
356 2eih_A Alcohol dehydrogenase; 93.0 0.048 1.6E-06 46.3 2.8 100 56-184 164-266 (343)
357 1uuf_A YAHK, zinc-type alcohol 93.0 0.057 1.9E-06 46.5 3.2 96 56-184 192-289 (369)
358 2h6e_A ADH-4, D-arabinose 1-de 92.9 0.19 6.3E-06 42.6 6.4 97 58-184 170-270 (344)
359 4eez_A Alcohol dehydrogenase 1 92.8 0.12 4E-06 43.8 4.8 102 56-184 161-264 (348)
360 3fbg_A Putative arginate lyase 92.7 0.25 8.7E-06 41.8 7.0 95 58-182 150-247 (346)
361 1qor_A Quinone oxidoreductase; 92.7 0.04 1.4E-06 46.4 1.8 99 56-183 138-239 (327)
362 2uyo_A Hypothetical protein ML 92.7 3.8 0.00013 34.3 14.1 114 59-187 103-222 (310)
363 4eye_A Probable oxidoreductase 92.6 0.039 1.3E-06 46.9 1.6 98 56-183 157-257 (342)
364 1g60_A Adenine-specific methyl 92.5 0.092 3.2E-06 42.9 3.7 37 146-182 20-73 (260)
365 1yb5_A Quinone oxidoreductase; 92.2 0.065 2.2E-06 45.7 2.5 99 56-183 168-269 (351)
366 1wly_A CAAR, 2-haloacrylate re 92.2 0.077 2.6E-06 44.8 2.9 100 56-184 143-245 (333)
367 2hcy_A Alcohol dehydrogenase 1 92.2 0.4 1.4E-05 40.5 7.5 101 56-184 167-270 (347)
368 2dq4_A L-threonine 3-dehydroge 92.1 0.11 3.7E-06 44.1 3.8 98 58-184 164-263 (343)
369 3me5_A Cytosine-specific methy 92.0 0.16 5.6E-06 45.5 5.0 43 59-101 88-130 (482)
370 1jvb_A NAD(H)-dependent alcoho 92.0 0.16 5.5E-06 43.0 4.8 101 56-184 168-272 (347)
371 2b5w_A Glucose dehydrogenase; 91.9 1.6 5.4E-05 36.9 11.0 98 56-184 164-274 (357)
372 2j8z_A Quinone oxidoreductase; 91.9 0.097 3.3E-06 44.6 3.2 100 56-184 160-262 (354)
373 3ggo_A Prephenate dehydrogenas 91.8 1.2 4.1E-05 37.4 9.9 90 60-181 34-126 (314)
374 1eg2_A Modification methylase 91.7 0.13 4.4E-06 43.6 3.8 39 146-184 55-107 (319)
375 3gaz_A Alcohol dehydrogenase s 91.7 0.11 3.9E-06 44.0 3.4 95 56-182 148-245 (343)
376 1rjd_A PPM1P, carboxy methyl t 91.6 2.5 8.5E-05 35.8 11.8 46 58-104 97-143 (334)
377 1tt7_A YHFP; alcohol dehydroge 91.5 0.16 5.6E-06 42.6 4.3 98 56-184 147-248 (330)
378 1xa0_A Putative NADPH dependen 91.5 0.19 6.7E-06 42.1 4.7 98 56-184 146-247 (328)
379 3krt_A Crotonyl COA reductase; 91.2 0.55 1.9E-05 41.4 7.6 107 56-183 226-344 (456)
380 1iz0_A Quinone oxidoreductase; 90.5 0.18 6.3E-06 41.8 3.6 92 56-183 123-218 (302)
381 3tqh_A Quinone oxidoreductase; 89.8 0.52 1.8E-05 39.3 5.8 92 56-183 150-245 (321)
382 3hwr_A 2-dehydropantoate 2-red 89.7 2 6.8E-05 35.8 9.4 104 58-188 18-125 (318)
383 3pi7_A NADH oxidoreductase; gr 89.3 0.23 7.7E-06 42.1 3.2 97 57-183 162-263 (349)
384 3l9w_A Glutathione-regulated p 88.9 3.7 0.00013 35.8 10.8 95 59-181 4-100 (413)
385 2hwk_A Helicase NSP2; rossman 88.6 0.37 1.3E-05 40.2 3.9 57 148-204 205-277 (320)
386 4ft4_B DNA (cytosine-5)-methyl 88.1 0.42 1.4E-05 45.2 4.5 45 58-102 211-261 (784)
387 3c85_A Putative glutathione-re 87.9 7 0.00024 29.3 11.3 98 59-183 39-139 (183)
388 3dmg_A Probable ribosomal RNA 87.9 11 0.00039 32.3 13.1 107 58-199 45-155 (381)
389 3llv_A Exopolyphosphatase-rela 87.6 6 0.00021 28.2 11.2 37 59-98 6-46 (141)
390 2g1u_A Hypothetical protein TM 87.3 2.3 7.9E-05 31.2 7.4 101 58-185 18-120 (155)
391 4a0s_A Octenoyl-COA reductase/ 87.2 1.4 4.9E-05 38.5 7.1 110 56-183 218-336 (447)
392 3ps9_A TRNA 5-methylaminomethy 87.1 0.61 2.1E-05 43.2 4.9 36 147-182 177-218 (676)
393 4dkj_A Cytosine-specific methy 86.7 0.62 2.1E-05 40.8 4.4 43 60-102 11-59 (403)
394 3swr_A DNA (cytosine-5)-methyl 86.6 0.78 2.7E-05 44.8 5.4 43 59-101 540-583 (1002)
395 3d1l_A Putative NADP oxidoredu 86.2 5 0.00017 32.1 9.4 89 59-181 10-100 (266)
396 2f1k_A Prephenate dehydrogenas 85.9 6.5 0.00022 31.6 10.1 85 61-180 2-88 (279)
397 2cdc_A Glucose dehydrogenase g 85.9 0.63 2.1E-05 39.6 4.0 93 59-184 181-279 (366)
398 3l4b_C TRKA K+ channel protien 85.9 10 0.00036 29.2 11.3 93 61-182 2-98 (218)
399 2g5c_A Prephenate dehydrogenas 85.8 12 0.00042 30.0 11.9 88 61-181 3-94 (281)
400 3trk_A Nonstructural polyprote 85.2 2.3 7.9E-05 35.1 6.7 57 148-204 210-282 (324)
401 3b1f_A Putative prephenate deh 84.5 9.6 0.00033 30.8 10.5 88 60-180 7-98 (290)
402 2ew2_A 2-dehydropantoate 2-red 84.0 14 0.00047 29.9 11.3 101 60-182 4-107 (316)
403 2y0c_A BCEC, UDP-glucose dehyd 83.9 4.4 0.00015 36.0 8.7 98 58-182 7-127 (478)
404 3ojo_A CAP5O; rossmann fold, c 83.8 6.3 0.00022 34.6 9.5 41 58-99 10-52 (431)
405 3c24_A Putative oxidoreductase 83.7 6.1 0.00021 32.1 9.0 84 60-180 12-98 (286)
406 2vn8_A Reticulon-4-interacting 83.7 0.74 2.5E-05 39.3 3.4 98 56-184 181-281 (375)
407 1lss_A TRK system potassium up 83.6 9.2 0.00032 26.7 11.5 93 59-180 4-100 (140)
408 3hn2_A 2-dehydropantoate 2-red 82.9 2.2 7.5E-05 35.4 6.0 47 148-194 68-114 (312)
409 3gqv_A Enoyl reductase; medium 82.8 2.1 7.3E-05 36.4 6.0 97 57-183 163-263 (371)
410 3gg2_A Sugar dehydrogenase, UD 82.6 8.5 0.00029 33.9 10.0 112 60-198 3-138 (450)
411 4a27_A Synaptic vesicle membra 82.3 2.2 7.4E-05 36.0 5.8 97 56-184 140-239 (349)
412 4f3n_A Uncharacterized ACR, CO 82.2 3.1 0.00011 36.7 6.8 44 59-102 138-187 (432)
413 1zkd_A DUF185; NESG, RPR58, st 81.3 4.3 0.00015 35.2 7.3 42 60-101 82-131 (387)
414 3av4_A DNA (cytosine-5)-methyl 81.1 1.9 6.5E-05 43.3 5.6 43 59-101 851-894 (1330)
415 4e12_A Diketoreductase; oxidor 80.9 7.2 0.00024 31.8 8.4 96 60-180 5-118 (283)
416 4g81_D Putative hexonate dehyd 80.2 20 0.00067 29.0 10.7 47 58-105 8-57 (255)
417 4fgs_A Probable dehydrogenase 79.7 9.6 0.00033 31.2 8.7 43 58-101 28-73 (273)
418 3gt0_A Pyrroline-5-carboxylate 79.3 4.6 0.00016 32.1 6.5 102 60-196 3-109 (247)
419 1zsy_A Mitochondrial 2-enoyl t 78.8 1.4 4.6E-05 37.4 3.3 99 56-183 165-270 (357)
420 3k96_A Glycerol-3-phosphate de 78.7 6.9 0.00024 33.3 7.8 98 59-182 29-132 (356)
421 1id1_A Putative potassium chan 78.3 17 0.00057 26.3 11.1 99 59-184 3-106 (153)
422 4fn4_A Short chain dehydrogena 78.1 4.7 0.00016 32.7 6.3 47 58-105 6-55 (254)
423 4e2x_A TCAB9; kijanose, tetron 78.1 6.9 0.00024 33.5 7.7 96 52-182 312-409 (416)
424 3i83_A 2-dehydropantoate 2-red 78.0 3.7 0.00013 34.1 5.8 47 148-194 70-116 (320)
425 1gu7_A Enoyl-[acyl-carrier-pro 77.8 4.2 0.00015 34.2 6.2 36 56-92 164-203 (364)
426 3pxx_A Carveol dehydrogenase; 77.6 20 0.00067 28.6 10.0 47 58-105 9-70 (287)
427 2cvz_A Dehydrogenase, 3-hydrox 77.6 21 0.00072 28.5 10.2 84 61-182 3-89 (289)
428 2dpo_A L-gulonate 3-dehydrogen 77.2 18 0.0006 30.3 9.8 96 60-180 7-120 (319)
429 4gua_A Non-structural polyprot 77.2 3.7 0.00013 37.5 5.6 60 145-204 217-292 (670)
430 1f0y_A HCDH, L-3-hydroxyacyl-C 77.0 9.5 0.00033 31.2 8.0 40 60-100 16-57 (302)
431 3tjr_A Short chain dehydrogena 76.7 15 0.0005 30.0 9.1 47 58-105 30-79 (301)
432 3tri_A Pyrroline-5-carboxylate 76.1 13 0.00046 30.2 8.6 104 59-197 3-111 (280)
433 4ezb_A Uncharacterized conserv 76.0 12 0.00041 31.0 8.4 33 149-181 87-119 (317)
434 1bg6_A N-(1-D-carboxylethyl)-L 75.9 5.6 0.00019 33.1 6.4 100 60-182 5-108 (359)
435 4eso_A Putative oxidoreductase 75.9 15 0.0005 29.2 8.7 43 58-101 7-52 (255)
436 3iup_A Putative NADPH:quinone 74.5 2.8 9.4E-05 35.8 4.1 42 57-99 169-214 (379)
437 3o38_A Short chain dehydrogena 74.1 28 0.00095 27.5 9.9 58 58-118 21-82 (266)
438 3ado_A Lambda-crystallin; L-gu 74.0 5.5 0.00019 33.6 5.7 43 59-102 6-50 (319)
439 3ghy_A Ketopantoate reductase 72.7 2.8 9.5E-05 35.2 3.6 38 148-185 69-106 (335)
440 1zcj_A Peroxisomal bifunctiona 72.6 32 0.0011 30.2 10.7 96 60-181 38-148 (463)
441 2aef_A Calcium-gated potassium 71.5 30 0.001 26.8 9.4 92 59-182 9-104 (234)
442 1h2b_A Alcohol dehydrogenase; 71.0 5.3 0.00018 33.7 5.0 44 55-99 183-229 (359)
443 3t4x_A Oxidoreductase, short c 70.8 37 0.0013 26.8 10.3 45 58-104 9-57 (267)
444 4imr_A 3-oxoacyl-(acyl-carrier 70.8 20 0.00069 28.8 8.4 46 58-105 32-81 (275)
445 3is3_A 17BETA-hydroxysteroid d 70.8 28 0.00097 27.6 9.3 46 58-105 17-67 (270)
446 4e21_A 6-phosphogluconate dehy 70.7 8.9 0.00031 32.7 6.4 91 58-181 21-113 (358)
447 4fs3_A Enoyl-[acyl-carrier-pro 70.6 36 0.0012 26.9 9.8 47 58-105 5-56 (256)
448 1piw_A Hypothetical zinc-type 70.5 3.5 0.00012 34.8 3.8 97 56-183 177-276 (360)
449 3ijr_A Oxidoreductase, short c 70.2 29 0.00098 28.1 9.3 43 58-102 46-93 (291)
450 3u5t_A 3-oxoacyl-[acyl-carrier 69.7 25 0.00084 28.1 8.7 47 58-105 26-76 (267)
451 3g0o_A 3-hydroxyisobutyrate de 69.3 25 0.00084 28.7 8.7 88 59-181 7-100 (303)
452 1dlj_A UDP-glucose dehydrogena 69.2 19 0.00064 31.0 8.2 47 149-196 73-131 (402)
453 3edm_A Short chain dehydrogena 69.1 28 0.00096 27.5 8.9 47 58-105 7-57 (259)
454 3fr7_A Putative ketol-acid red 69.1 9.5 0.00032 34.3 6.3 93 58-182 52-154 (525)
455 1hyh_A L-hicdh, L-2-hydroxyiso 69.0 46 0.0016 27.2 11.4 38 61-98 3-43 (309)
456 3iht_A S-adenosyl-L-methionine 68.9 15 0.00051 27.8 6.4 44 46-89 27-72 (174)
457 2vz8_A Fatty acid synthase; tr 68.7 11 0.00039 40.4 7.8 103 56-182 1665-1769(2512)
458 3tfo_A Putative 3-oxoacyl-(acy 68.7 33 0.0011 27.4 9.2 46 58-105 3-52 (264)
459 3oig_A Enoyl-[acyl-carrier-pro 68.6 37 0.0013 26.7 9.5 59 58-119 6-69 (266)
460 2hmt_A YUAA protein; RCK, KTN, 68.5 25 0.00087 24.4 7.7 35 58-95 5-43 (144)
461 3ego_A Probable 2-dehydropanto 68.5 20 0.00069 29.4 8.0 90 60-177 3-94 (307)
462 3ksu_A 3-oxoacyl-acyl carrier 68.1 19 0.00065 28.6 7.6 43 58-102 10-59 (262)
463 3v2g_A 3-oxoacyl-[acyl-carrier 67.9 44 0.0015 26.6 10.0 47 58-105 30-80 (271)
464 3ftp_A 3-oxoacyl-[acyl-carrier 67.6 40 0.0014 26.9 9.5 46 58-105 27-76 (270)
465 3r3s_A Oxidoreductase; structu 67.6 45 0.0016 26.9 10.0 46 58-105 48-99 (294)
466 1lnq_A MTHK channels, potassiu 67.4 51 0.0017 27.1 10.5 91 60-182 116-210 (336)
467 3pid_A UDP-glucose 6-dehydroge 66.6 30 0.001 30.2 9.1 39 59-99 36-76 (432)
468 3ktd_A Prephenate dehydrogenas 66.6 11 0.00037 32.0 6.0 87 60-179 9-97 (341)
469 1wma_A Carbonyl reductase [NAD 66.6 41 0.0014 26.1 9.4 56 58-118 3-63 (276)
470 3f9i_A 3-oxoacyl-[acyl-carrier 66.3 44 0.0015 25.9 10.0 42 58-101 13-58 (249)
471 1a5z_A L-lactate dehydrogenase 66.2 43 0.0015 27.6 9.7 38 61-98 2-42 (319)
472 2v6b_A L-LDH, L-lactate dehydr 65.8 54 0.0019 26.8 11.1 36 61-96 2-40 (304)
473 1lld_A L-lactate dehydrogenase 65.7 43 0.0015 27.2 9.6 37 59-95 7-46 (319)
474 3goh_A Alcohol dehydrogenase, 65.7 3.9 0.00013 33.7 3.0 87 56-182 140-228 (315)
475 3pgx_A Carveol dehydrogenase; 65.6 38 0.0013 26.9 9.1 47 58-105 14-76 (280)
476 3mog_A Probable 3-hydroxybutyr 65.4 51 0.0017 29.2 10.5 96 60-181 6-118 (483)
477 3ic5_A Putative saccharopine d 65.4 27 0.00094 23.2 9.3 38 59-98 5-46 (118)
478 3ucx_A Short chain dehydrogena 65.1 21 0.00072 28.3 7.3 47 58-105 10-59 (264)
479 3g17_A Similar to 2-dehydropan 64.9 4.8 0.00016 33.0 3.4 37 148-184 61-97 (294)
480 1vpd_A Tartronate semialdehyde 64.6 18 0.0006 29.3 6.9 86 60-181 6-97 (299)
481 4a7p_A UDP-glucose dehydrogena 64.6 16 0.00055 32.1 6.9 50 149-198 84-145 (446)
482 2o3j_A UDP-glucose 6-dehydroge 64.5 43 0.0015 29.5 9.8 39 60-98 10-51 (481)
483 3svt_A Short-chain type dehydr 64.0 15 0.00052 29.4 6.3 59 58-118 10-72 (281)
484 1jw9_B Molybdopterin biosynthe 63.6 25 0.00086 28.0 7.5 34 58-91 30-65 (249)
485 3gvc_A Oxidoreductase, probabl 63.6 54 0.0018 26.2 9.6 43 58-101 28-73 (277)
486 3tsc_A Putative oxidoreductase 63.5 46 0.0016 26.4 9.1 47 58-105 10-72 (277)
487 3sx2_A Putative 3-ketoacyl-(ac 63.5 43 0.0015 26.5 9.0 46 58-105 12-73 (278)
488 3oec_A Carveol dehydrogenase ( 63.3 54 0.0019 26.7 9.8 46 58-105 45-106 (317)
489 4egf_A L-xylulose reductase; s 63.3 47 0.0016 26.2 9.2 44 58-103 19-66 (266)
490 3h7a_A Short chain dehydrogena 63.2 15 0.0005 29.1 6.0 47 58-105 6-55 (252)
491 3nyw_A Putative oxidoreductase 63.0 24 0.00082 27.8 7.2 46 58-104 6-54 (250)
492 2h78_A Hibadh, 3-hydroxyisobut 62.7 28 0.00097 28.1 7.8 86 60-181 4-95 (302)
493 3rku_A Oxidoreductase YMR226C; 61.9 41 0.0014 27.2 8.6 45 58-103 32-82 (287)
494 3qha_A Putative oxidoreductase 61.8 12 0.0004 30.6 5.3 86 60-182 16-104 (296)
495 3abi_A Putative uncharacterize 61.7 7.3 0.00025 33.0 4.1 39 58-98 15-55 (365)
496 1np3_A Ketol-acid reductoisome 60.8 13 0.00045 31.2 5.5 87 58-181 15-105 (338)
497 3ulk_A Ketol-acid reductoisome 60.5 24 0.00083 31.3 7.1 91 58-182 36-131 (491)
498 3sju_A Keto reductase; short-c 60.2 18 0.0006 29.1 6.0 46 58-105 23-72 (279)
499 3pwz_A Shikimate dehydrogenase 59.8 40 0.0014 27.4 8.1 42 58-99 119-162 (272)
500 3qiv_A Short-chain dehydrogena 59.7 20 0.00067 28.1 6.1 46 58-105 8-57 (253)
No 1
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.96 E-value=3.2e-27 Score=190.28 Aligned_cols=197 Identities=35% Similarity=0.464 Sum_probs=166.0
Q ss_pred CCCCceeecCceEEeeCCCCCCC--CcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHh
Q 041459 1 ESFHPVEVTKGLWIVPEWSTPPD--VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK 78 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~ 78 (225)
++|+||.+++..++.|.|.++.. .+...+.++|++.|+++.+++...+...+.....++.+|||+|||+|.++..+++
T Consensus 1 ~~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~ 80 (205)
T 3grz_A 1 KYYHVINLSRHLAIVPEWEDYQPVFKDQEIIRLDPGLAFGTGNHQTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHK 80 (205)
T ss_dssp CCCCCEEEETTEEEEETTCCCCCSSTTCEEEEESCC-----CCHHHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHH
T ss_pred CCCCcEEECCcEEEeccccccccCCCCceeEEecCCcccCCCCCccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHH
Confidence 58999999999999999998644 6778889999999999999999999999988777899999999999999999988
Q ss_pred cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccc
Q 041459 79 FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANIL 158 (225)
Q Consensus 79 ~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~ 158 (225)
.+..+++|+|+++.+++.|++++..+++.+ +.+...+.... ..++||+|+++++
T Consensus 81 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~------------------------~~~~fD~i~~~~~ 134 (205)
T 3grz_A 81 LGAKSVLATDISDESMTAAEENAALNGIYD--IALQKTSLLAD------------------------VDGKFDLIVANIL 134 (205)
T ss_dssp TTCSEEEEEESCHHHHHHHHHHHHHTTCCC--CEEEESSTTTT------------------------CCSCEEEEEEESC
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCc--eEEEecccccc------------------------CCCCceEEEECCc
Confidence 888899999999999999999998888763 66666554332 4578999999999
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhcccccCCceEEEeeeecccc
Q 041459 159 LNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILLSEMDDWTCVSGTKKRAKE 223 (225)
Q Consensus 159 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~k~~~~~ 223 (225)
++.+..+++.+.++|||||.++++++.......+.+.+.+. |..+.....+.|.++...++..+.
T Consensus 135 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~w~~~~~~~~~~~~ 200 (205)
T 3grz_A 135 AEILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMRAGRWIGLAISRKHEGH 200 (205)
T ss_dssp HHHHHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEEETTEEEEEEEECC---
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeeccCCEEEEEEecccccc
Confidence 99999999999999999999999888888888888888876 877888888999999998887553
No 2
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.95 E-value=1.3e-27 Score=199.80 Aligned_cols=188 Identities=28% Similarity=0.477 Sum_probs=158.6
Q ss_pred CCCceeecCceEEeeCCCCCCCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCC
Q 041459 2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGA 81 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~ 81 (225)
+|+|+.++. .++.|+|... ......+.++|++.|+++.++++..+++++....+++.+|||+|||+|.+++.+++.+.
T Consensus 66 ~~~p~~~~~-~~i~~~w~~~-~~~~~~~~l~p~~~fgtg~~~tt~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~ 143 (254)
T 2nxc_A 66 DLKPALAPP-FVVLAPWHTW-EGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG 143 (254)
T ss_dssp HCCCEEETT-EEEECTTCCC-CSSSEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTC
T ss_pred hCCCEEEec-EEEeCCCCCC-CCCceEEEECCCccccCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCC
Confidence 689999999 9999999984 67778899999999999999999999999987777889999999999999999988877
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH
Q 041459 82 AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP 161 (225)
Q Consensus 82 ~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~ 161 (225)
+++|+|+++.+++.|++|+..+++. +.+...+... .+ +.++||+|++|.+.+.
T Consensus 144 -~v~gvDi~~~~v~~a~~n~~~~~~~---v~~~~~d~~~----------~~-------------~~~~fD~Vv~n~~~~~ 196 (254)
T 2nxc_A 144 -KALGVDIDPMVLPQAEANAKRNGVR---PRFLEGSLEA----------AL-------------PFGPFDLLVANLYAEL 196 (254)
T ss_dssp -EEEEEESCGGGHHHHHHHHHHTTCC---CEEEESCHHH----------HG-------------GGCCEEEEEEECCHHH
T ss_pred -eEEEEECCHHHHHHHHHHHHHcCCc---EEEEECChhh----------cC-------------cCCCCCEEEECCcHHH
Confidence 8999999999999999999888764 4444432211 00 3567999999999988
Q ss_pred HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhcccccCCceEEEeee
Q 041459 162 LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILLSEMDDWTCVSGTK 218 (225)
Q Consensus 162 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~k 218 (225)
+..++..+.+.|||||.++++++......++.+.+++. |..+.....++|.++.++|
T Consensus 197 ~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~l~~~k 254 (254)
T 2nxc_A 197 HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR 254 (254)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEeccCCeEEEEEEC
Confidence 89999999999999999999988888889999988876 8888888899999999875
No 3
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.74 E-value=4.7e-17 Score=136.42 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=90.3
Q ss_pred HHHHHHhhccCCCcEEEEcccccHHHHHHHhc---CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcc
Q 041459 48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKF---GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPAS 124 (225)
Q Consensus 48 ~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~---~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (225)
+..++...+++|.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|++++...+.. .++.+...+...+
T Consensus 60 i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~-~~v~~~~~D~~~~--- 135 (261)
T 4gek_A 60 IGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-TPVDVIEGDIRDI--- 135 (261)
T ss_dssp HHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCS-SCEEEEESCTTTC---
T ss_pred HHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccC-ceEEEeecccccc---
Confidence 33344455778999999999999999998874 3458999999999999999998876654 4566776666554
Q ss_pred ccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCC
Q 041459 125 MNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (225)
+.+.||+|+++..+++ ...+++++++.|||||.+++++...
T Consensus 136 ---------------------~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~ 181 (261)
T 4gek_A 136 ---------------------AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 181 (261)
T ss_dssp ---------------------CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred ---------------------cccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence 4567999999888764 3467999999999999999976654
No 4
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.72 E-value=2.6e-16 Score=138.63 Aligned_cols=167 Identities=17% Similarity=0.207 Sum_probs=122.5
Q ss_pred ceeEEecccceecCCCCchHHHHHHHHHhhc----cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI----KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~----~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
+..+...|+..+..+.++....+++.+.... .++.+|||+|||+|.++..+++.+ .+++++|+++.+++.|++++
T Consensus 197 ~~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g-~~V~gvDis~~al~~A~~n~ 275 (381)
T 3dmg_A 197 EYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGL 275 (381)
T ss_dssp EEEEEECTTCTTTTSCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTT-CEEEEEESBHHHHHHHHHHH
T ss_pred eEEEEeCCCceeCCCCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHH
Confidence 3466677887777777888888888876544 267899999999999999998885 48999999999999999999
Q ss_pred HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--------HHHHHHHHHHhc
Q 041459 102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------LLQLADHIVSYA 173 (225)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------~~~~l~~~~~~L 173 (225)
..+++. +.+...+...... ..++||+|++|++++. ...++..+.+.|
T Consensus 276 ~~~~~~---v~~~~~D~~~~~~----------------------~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~L 330 (381)
T 3dmg_A 276 EANALK---AQALHSDVDEALT----------------------EEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARL 330 (381)
T ss_dssp HHTTCC---CEEEECSTTTTSC----------------------TTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHE
T ss_pred HHcCCC---eEEEEcchhhccc----------------------cCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhc
Confidence 988764 5566655544311 3478999999988764 457899999999
Q ss_pred cCCeEEEEeccCCCcHHHHHHHHHhhhhhhcccccCCceEEEeeeecc
Q 041459 174 KPGAVVGISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKRA 221 (225)
Q Consensus 174 kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~k~~~ 221 (225)
||||.+++++........ .+.+.|...+......|.-+...+...
T Consensus 331 kpGG~l~iv~n~~l~~~~---~l~~~f~~v~~l~~~gF~Vl~a~~~~~ 375 (381)
T 3dmg_A 331 RPGGVFFLVSNPFLKYEP---LLEEKFGAFQTLKVAEYKVLFAEKRGR 375 (381)
T ss_dssp EEEEEEEEEECTTSCHHH---HHHHHHSCCEEEEESSSEEEEEECC--
T ss_pred CcCcEEEEEEcCCCChHH---HHHHhhccEEEEeCCCEEEEEEEEecc
Confidence 999999997665543333 333334444433556677666665543
No 5
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.71 E-value=1.5e-16 Score=129.71 Aligned_cols=150 Identities=21% Similarity=0.314 Sum_probs=103.8
Q ss_pred HHhhccCCCcEEEEccc-ccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccc
Q 041459 52 LQSLIKGGELFLDYGTG-SGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVD 130 (225)
Q Consensus 52 L~~~~~~~~~vlDiGcG-tG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
+....+++.+|||+||| +|.++..+++....+++|+|+++.+++.|++++..+++ .+.+...+...+.
T Consensus 49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~-------- 117 (230)
T 3evz_A 49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS---NVRLVKSNGGIIK-------- 117 (230)
T ss_dssp HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC---CCEEEECSSCSST--------
T ss_pred hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC---CcEEEeCCchhhh--------
Confidence 34456688999999999 99999998876467799999999999999999998886 3566665543221
Q ss_pred ccccccccccccCCCCCCceeEEEeccchhH----------------------HHHHHHHHHHhccCCeEEEEeccCC-C
Q 041459 131 GIVEDLSSHEIRGISETEKYDVVIANILLNP----------------------LLQLADHIVSYAKPGAVVGISGILS-E 187 (225)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~----------------------~~~~l~~~~~~LkpgG~l~~~~~~~-~ 187 (225)
.+ +.++||+|++|+|+.+ +..+++.+.++|||||.+++..... .
T Consensus 118 ------------~~-~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 184 (230)
T 3evz_A 118 ------------GV-VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEK 184 (230)
T ss_dssp ------------TT-CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHH
T ss_pred ------------hc-ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHh
Confidence 00 3578999999988743 3678999999999999999854332 4
Q ss_pred cHHHHHHHHHhh-hh--hhcccccCCc-eEEEeeeecccccC
Q 041459 188 QLPHIINRYSEF-LE--DILLSEMDDW-TCVSGTKKRAKEDH 225 (225)
Q Consensus 188 ~~~~~~~~~~~~-~~--~~~~~~~~~w-~~~~~~k~~~~~~~ 225 (225)
....+.+.+.+. +. .+.......| ..+.++|.....+|
T Consensus 185 ~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~~~~~~~~~ 226 (230)
T 3evz_A 185 LLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFFKGISEGHH 226 (230)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEECCC-----
T ss_pred HHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEecccccccc
Confidence 556666666654 42 2222223333 46677776666554
No 6
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.71 E-value=7.1e-16 Score=121.40 Aligned_cols=138 Identities=18% Similarity=0.233 Sum_probs=106.5
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++. ..+++++|+++.+++.|+++...+++.+.++.+...+.....
T Consensus 51 ~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-------------- 115 (194)
T 1dus_A 51 DKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV-------------- 115 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC--------------
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc--------------
Confidence 36789999999999999998887 678999999999999999999887765323666655543220
Q ss_pred ccccccCCCCCCceeEEEeccchhH----HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhhhhhcc-cccCCc
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP----LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILL-SEMDDW 211 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w 211 (225)
..++||+|++++++++ ...+++.+.+.|+|||.+++.+.......++.+.+++.+..++. ...+.|
T Consensus 116 ---------~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 186 (194)
T 1dus_A 116 ---------KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGGY 186 (194)
T ss_dssp ---------TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEETTE
T ss_pred ---------ccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEecCCcE
Confidence 3568999999998653 56789999999999999999888776777777887777654443 334567
Q ss_pred eEEEeee
Q 041459 212 TCVSGTK 218 (225)
Q Consensus 212 ~~~~~~k 218 (225)
..+..+|
T Consensus 187 ~~~~~~k 193 (194)
T 1dus_A 187 RVLKSKK 193 (194)
T ss_dssp EEEEEEC
T ss_pred EEEEEee
Confidence 6666554
No 7
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.69 E-value=2.4e-16 Score=125.04 Aligned_cols=133 Identities=22% Similarity=0.229 Sum_probs=94.7
Q ss_pred ceeEEecccceecCCCCchHHHHHHHHHhhc-----cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHH
Q 041459 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI-----KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQN 100 (225)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~-----~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~ 100 (225)
+..+.+++ .. .+++...+.+.+...+ .++.+|||+|||+|.+++.+++.+..+++|+|+++.+++.|+++
T Consensus 12 g~~l~~~~-~~----~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~ 86 (189)
T 3p9n_A 12 GRRIAVPP-RG----TRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARN 86 (189)
T ss_dssp TCEEECCS-CC----C---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHH
T ss_pred CcEecCCC-CC----CccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHH
Confidence 34555554 32 3444444444332221 46889999999999999988888888899999999999999999
Q ss_pred HHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH----HHHHHHHHHH--hcc
Q 041459 101 AALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP----LLQLADHIVS--YAK 174 (225)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~----~~~~l~~~~~--~Lk 174 (225)
+..+++. .+.+...+...+ .... ..++||+|+++++++. +...+..+.+ +||
T Consensus 87 ~~~~~~~--~v~~~~~d~~~~-------~~~~-------------~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~ 144 (189)
T 3p9n_A 87 IEALGLS--GATLRRGAVAAV-------VAAG-------------TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTR 144 (189)
T ss_dssp HHHHTCS--CEEEEESCHHHH-------HHHC-------------CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCC
T ss_pred HHHcCCC--ceEEEEccHHHH-------Hhhc-------------cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccC
Confidence 9988873 355655443221 0000 3578999999998865 5678889988 999
Q ss_pred CCeEEEEeccC
Q 041459 175 PGAVVGISGIL 185 (225)
Q Consensus 175 pgG~l~~~~~~ 185 (225)
|||.+++....
T Consensus 145 pgG~l~~~~~~ 155 (189)
T 3p9n_A 145 EGTVAVVERAT 155 (189)
T ss_dssp TTCEEEEEEET
T ss_pred CCeEEEEEecC
Confidence 99999996543
No 8
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=99.69 E-value=8.2e-16 Score=135.96 Aligned_cols=153 Identities=17% Similarity=0.149 Sum_probs=117.7
Q ss_pred CCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 22 PDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 22 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
..+.++.+.+++...+.+|.+..++....++....++|++|||+|||+|.+++.+++.+.. |+++|+|+.+++.|++|+
T Consensus 178 v~E~g~~f~vd~~~~~~tG~f~dqr~~r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~ 256 (393)
T 4dmg_A 178 VEEDGLRFPIPLALAQKTGYYLDQRENRRLFEAMVRPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAA 256 (393)
T ss_dssp EEETTEEEEEETTTCCTTSSCGGGHHHHHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHH
T ss_pred EEECCEEEEEechhccccCcCCCHHHHHHHHHHHhcCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHH
Confidence 4467788889998888999999999988888877777999999999999999999988766 999999999999999999
Q ss_pred HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch------------hHHHHHHHHH
Q 041459 102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL------------NPLLQLADHI 169 (225)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~------------~~~~~~l~~~ 169 (225)
..+++.. .+...+.. .++ .. ..+.||+|++++|. ..+..++..+
T Consensus 257 ~~ng~~~---~~~~~D~~-----------~~l--------~~--~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a 312 (393)
T 4dmg_A 257 LRLGLRV---DIRHGEAL-----------PTL--------RG--LEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREA 312 (393)
T ss_dssp HHHTCCC---EEEESCHH-----------HHH--------HT--CCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHH
T ss_pred HHhCCCC---cEEEccHH-----------HHH--------HH--hcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9998762 23332221 110 01 12349999999985 3456789999
Q ss_pred HHhccCCeEEEE-eccCCCcHHHHHHHHHhh
Q 041459 170 VSYAKPGAVVGI-SGILSEQLPHIINRYSEF 199 (225)
Q Consensus 170 ~~~LkpgG~l~~-~~~~~~~~~~~~~~~~~~ 199 (225)
.++|||||.+++ +|........+.+.+...
T Consensus 313 ~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a 343 (393)
T 4dmg_A 313 LRLLAEEGFLWLSSCSYHLRLEDLLEVARRA 343 (393)
T ss_dssp HHTEEEEEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 999999999984 555555555555555443
No 9
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.69 E-value=9.9e-16 Score=120.73 Aligned_cols=119 Identities=16% Similarity=0.155 Sum_probs=89.4
Q ss_pred chHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCC
Q 041459 43 ATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122 (225)
Q Consensus 43 ~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (225)
........++...++++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++..+++. ++.+...+...+
T Consensus 7 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~~~~~l- 82 (185)
T 3mti_A 7 RPIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIE--NTELILDGHENL- 82 (185)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCC--CEEEEESCGGGG-
T ss_pred hHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEeCcHHHH-
Confidence 3455566667666778999999999999999999988 678999999999999999999888874 355554322211
Q ss_pred ccccccccccccccccccccCCCCCCceeEEEeccch------------hHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL------------NPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
..+ .+++||+|++++++ ......++.+.+.|||||.+++.++.
T Consensus 83 -------~~~-------------~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 83 -------DHY-------------VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp -------GGT-------------CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred -------Hhh-------------ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 001 35689999998533 22346789999999999999987664
No 10
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.68 E-value=5.8e-16 Score=130.72 Aligned_cols=148 Identities=19% Similarity=0.245 Sum_probs=107.1
Q ss_pred CCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 23 DVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 23 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
.+.+..+.+++.. ++-++........+....+++.+|||+|||+|.+++.+++.+..+++|+|+++.+++.|++|+.
T Consensus 93 ~e~g~~f~~d~~~---~~f~~~~~~~~~~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~ 169 (278)
T 2frn_A 93 VENGIKYKLDVAK---IMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIH 169 (278)
T ss_dssp EETTEEEEEETTT---SCCCGGGHHHHHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHH
T ss_pred EECCEEEEEEccc---eeEcCCcHHHHHHHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH
Confidence 3556666666542 1123333344455555667799999999999999999998876689999999999999999999
Q ss_pred hcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 103 LNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.+++. +.+.+...+...+. ...+||+|+++++... ..++..+.+.|||||.+++.
T Consensus 170 ~n~~~-~~v~~~~~D~~~~~-----------------------~~~~fD~Vi~~~p~~~-~~~l~~~~~~LkpgG~l~~~ 224 (278)
T 2frn_A 170 LNKVE-DRMSAYNMDNRDFP-----------------------GENIADRILMGYVVRT-HEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp HTTCT-TTEEEECSCTTTCC-----------------------CCSCEEEEEECCCSSG-GGGHHHHHHHEEEEEEEEEE
T ss_pred HcCCC-ceEEEEECCHHHhc-----------------------ccCCccEEEECCchhH-HHHHHHHHHHCCCCeEEEEE
Confidence 99886 34666666554431 3568999999988543 56788899999999999986
Q ss_pred ccC------CCcHHHHHHHHHh
Q 041459 183 GIL------SEQLPHIINRYSE 198 (225)
Q Consensus 183 ~~~------~~~~~~~~~~~~~ 198 (225)
+.. ......+.+.+.+
T Consensus 225 ~~~~~~~~~~~~~~~i~~~~~~ 246 (278)
T 2frn_A 225 NTVPEKLMPREPFETFKRITKE 246 (278)
T ss_dssp EEEEGGGTTTTTHHHHHHHHHH
T ss_pred EeeccccccccHHHHHHHHHHH
Confidence 554 2344455544443
No 11
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=99.67 E-value=9.5e-16 Score=132.73 Aligned_cols=157 Identities=14% Similarity=0.100 Sum_probs=113.6
Q ss_pred CcceeEEecccceecCCCCchHHHHHHHHHhhcc---CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHH
Q 041459 24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIK---GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQN 100 (225)
Q Consensus 24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~---~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~ 100 (225)
+.+..+.+++...+.+|.++.++....++...+. ++.+|||+|||+|.+++.+++.+. +++++|+|+.+++.|++|
T Consensus 116 e~g~~f~v~~~~~~~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n 194 (332)
T 2igt_A 116 LLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKEN 194 (332)
T ss_dssp ETTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHH
T ss_pred ECCEEEEEecCccccceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHH
Confidence 4567777888877788888888877666655543 578999999999999999998877 899999999999999999
Q ss_pred HHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch-------------hHHHHHHH
Q 041459 101 AALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL-------------NPLLQLAD 167 (225)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~-------------~~~~~~l~ 167 (225)
+..+++.+..+.+...+...+ ..... ....+||+|++|+|. ..+..++.
T Consensus 195 ~~~~gl~~~~v~~i~~D~~~~-------l~~~~-----------~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~ 256 (332)
T 2igt_A 195 QVLAGLEQAPIRWICEDAMKF-------IQREE-----------RRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLD 256 (332)
T ss_dssp HHHHTCTTSCEEEECSCHHHH-------HHHHH-----------HHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHH
T ss_pred HHHcCCCccceEEEECcHHHH-------HHHHH-----------hcCCCceEEEECCccccCCchHHHHHHHHHHHHHHH
Confidence 998887643355554433211 00000 014689999999884 13567899
Q ss_pred HHHHhccCCeEEEEeccC--CCcHHHHHHHHHhh
Q 041459 168 HIVSYAKPGAVVGISGIL--SEQLPHIINRYSEF 199 (225)
Q Consensus 168 ~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~ 199 (225)
.+.++|||||.+++.+.. ......+.+.+++.
T Consensus 257 ~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a 290 (332)
T 2igt_A 257 ICREILSPKALGLVLTAYSIRASFYSMHELMRET 290 (332)
T ss_dssp HHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 999999999997775433 22445555555533
No 12
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.67 E-value=2.8e-15 Score=120.15 Aligned_cols=120 Identities=14% Similarity=0.117 Sum_probs=96.8
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
++++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..+++. ++.+...+.....
T Consensus 38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~------------ 103 (204)
T 3e05_A 38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVAR--NVTLVEAFAPEGL------------ 103 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCT--TEEEEECCTTTTC------------
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEeCChhhhh------------
Confidence 457889999999999999998876 4678999999999999999999888763 3666665543220
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
.....||+|+++.+.+.+..+++.+.+.|||||.+++.+........+.+.+++.
T Consensus 104 ----------~~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~ 158 (204)
T 3e05_A 104 ----------DDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDH 158 (204)
T ss_dssp ----------TTSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHT
T ss_pred ----------hcCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHC
Confidence 0236799999998888888999999999999999999877666666776666654
No 13
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.66 E-value=3.7e-15 Score=120.14 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=93.8
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+.++.+|||+|||+|.++..+++. ..+++|+|+++.+++.|++++..+++. +.+.+...+....
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~-------------- 116 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLS-PRMRAVQGTAPAA-------------- 116 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCTTGG--------------
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CCEEEEeCchhhh--------------
Confidence 456889999999999999999888 678999999999999999999888875 2466666554331
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
+.....||+|+++.... .. +++.+.++|||||.++++....+....+.+.+++.
T Consensus 117 --------~~~~~~~D~v~~~~~~~-~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~ 170 (204)
T 3njr_A 117 --------LADLPLPEAVFIGGGGS-QA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARH 170 (204)
T ss_dssp --------GTTSCCCSEEEECSCCC-HH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHH
T ss_pred --------cccCCCCCEEEECCccc-HH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhC
Confidence 00235799999987664 34 89999999999999999887777777777776654
No 14
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.65 E-value=2e-15 Score=125.78 Aligned_cols=120 Identities=22% Similarity=0.251 Sum_probs=93.8
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||+|.+++.+++.+..+++|+|+++.+++.|++++..+++. +++.+...+...+. ..+
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~-~~v~~~~~D~~~~~-------~~~----- 115 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLE-DQIEIIEYDLKKIT-------DLI----- 115 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCT-TTEEEECSCGGGGG-------GTS-----
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCc-ccEEEEECcHHHhh-------hhh-----
Confidence 68899999999999999999876668999999999999999999988876 34666655443221 001
Q ss_pred cccccCCCCCCceeEEEeccchhH-----------------------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHH
Q 041459 138 SHEIRGISETEKYDVVIANILLNP-----------------------LLQLADHIVSYAKPGAVVGISGILSEQLPHIIN 194 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~-----------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 194 (225)
+.++||+|++|+|+.. +..++..+.++|||||.+++. .......++..
T Consensus 116 --------~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~ 186 (259)
T 3lpm_A 116 --------PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV-HRPERLLDIID 186 (259)
T ss_dssp --------CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE-ECTTTHHHHHH
T ss_pred --------ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE-EcHHHHHHHHH
Confidence 3678999999998733 346889999999999999984 45567777777
Q ss_pred HHHhh
Q 041459 195 RYSEF 199 (225)
Q Consensus 195 ~~~~~ 199 (225)
.+.+.
T Consensus 187 ~l~~~ 191 (259)
T 3lpm_A 187 IMRKY 191 (259)
T ss_dssp HHHHT
T ss_pred HHHHC
Confidence 77654
No 15
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.65 E-value=2e-15 Score=121.17 Aligned_cols=103 Identities=20% Similarity=0.205 Sum_probs=84.9
Q ss_pred CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459 59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS 138 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (225)
+.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++...++. .++.+...+...++.
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~--------------- 107 (219)
T 3dlc_A 44 AGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLN-DRIQIVQGDVHNIPI--------------- 107 (219)
T ss_dssp EEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECBTTBCSS---------------
T ss_pred CCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhcccc-CceEEEEcCHHHCCC---------------
Confidence 3499999999999999988876668999999999999999999887765 356666666544321
Q ss_pred ccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459 139 HEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 139 ~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+.++||+|+++..+++ ...+++++.+.|||||.+++++.
T Consensus 108 -------~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 149 (219)
T 3dlc_A 108 -------EDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGG 149 (219)
T ss_dssp -------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred -------CcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEec
Confidence 4678999999988765 47789999999999999999753
No 16
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.65 E-value=2e-15 Score=127.95 Aligned_cols=144 Identities=22% Similarity=0.322 Sum_probs=101.8
Q ss_pred ceeEEecccceecCCCCchHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
+..+.++++..+ .++.+..+.+.+.... .++.+|||+|||+|.+++.+++.+..+++|+|+|+.+++.|++|+..
T Consensus 92 ~~~~~v~~~~li---pr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~ 168 (284)
T 1nv8_A 92 GLSFLVEEGVFV---PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAER 168 (284)
T ss_dssp TEEEECCTTSCC---CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHH
T ss_pred CeEEEeCCCcee---cChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 455666666433 3444544444443322 36789999999999999998876667899999999999999999998
Q ss_pred cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCce---eEEEeccchhHH------------------
Q 041459 104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKY---DVVIANILLNPL------------------ 162 (225)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---DvIi~~~~~~~~------------------ 162 (225)
+++. +++.+...+.... ..++| |+|++|+|+...
T Consensus 169 ~~l~-~~v~~~~~D~~~~------------------------~~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~ 223 (284)
T 1nv8_A 169 HGVS-DRFFVRKGEFLEP------------------------FKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFG 223 (284)
T ss_dssp TTCT-TSEEEEESSTTGG------------------------GGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBC
T ss_pred cCCC-CceEEEECcchhh------------------------cccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcC
Confidence 8875 2455655543221 12467 999999887421
Q ss_pred ----HHHHHHHH-HhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 163 ----LQLADHIV-SYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 163 ----~~~l~~~~-~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
..++..+. +.|+|||.+++. +...+...+.+.+++
T Consensus 224 ~~dgl~~~~~i~~~~l~pgG~l~~e-~~~~q~~~v~~~~~~ 263 (284)
T 1nv8_A 224 GEDGLDFYREFFGRYDTSGKIVLME-IGEDQVEELKKIVSD 263 (284)
T ss_dssp TTTSCHHHHHHHHHCCCTTCEEEEE-CCTTCHHHHTTTSTT
T ss_pred CCcHHHHHHHHHHhcCCCCCEEEEE-ECchHHHHHHHHHHh
Confidence 15788899 999999999984 555666666655544
No 17
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.65 E-value=5e-15 Score=117.78 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=89.9
Q ss_pred hHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCC
Q 041459 44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 121 (225)
Q Consensus 44 ~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 121 (225)
.......++...++++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+++. .++.+...+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~ 86 (197)
T 3eey_A 8 SLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI-DRVTLIKDGHQNM 86 (197)
T ss_dssp HHHHHHHHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCG-GGEEEECSCGGGG
T ss_pred HHHHHHHHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CCeEEEECCHHHH
Confidence 334444445555678899999999999999998875 4568999999999999999999887763 3455555443222
Q ss_pred CccccccccccccccccccccCCCCCCceeEEEeccchh------------HHHHHHHHHHHhccCCeEEEEeccC
Q 041459 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN------------PLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
. .. ..++||+|++++++- ....+++.+.++|||||.+++.++.
T Consensus 87 ~--------~~-------------~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 87 D--------KY-------------IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp G--------GT-------------CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred h--------hh-------------ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 1 00 347899999998661 2456899999999999999987653
No 18
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=99.65 E-value=3.6e-15 Score=131.55 Aligned_cols=157 Identities=11% Similarity=0.051 Sum_probs=113.0
Q ss_pred CcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
+.+..+.+++.....++-+..++....++.....++.+|||+|||+|.+++.+++.++.+++++|+++.+++.|++|+..
T Consensus 178 e~g~~f~v~~~~~~~t~ff~~~~~~~~~~~~~~~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~ 257 (385)
T 2b78_A 178 ENGISYNVFLNDGLMTGIFLDQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEA 257 (385)
T ss_dssp ETTEEEEECSSSSSCCSSCGGGHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHH
T ss_pred ECCEEEEEeccccccCCcCCcHHHHHHHHHHHhcCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 36788888888655666665666666666555356889999999999999999988888999999999999999999999
Q ss_pred cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh------------HHHHHHHHHHH
Q 041459 104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN------------PLLQLADHIVS 171 (225)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~------------~~~~~l~~~~~ 171 (225)
+++....+.+...+...+ +..+. ....+||+|++++|.. .+..++..+.+
T Consensus 258 n~~~~~~v~~~~~D~~~~-------l~~~~-----------~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~ 319 (385)
T 2b78_A 258 NHLDMANHQLVVMDVFDY-------FKYAR-----------RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLE 319 (385)
T ss_dssp TTCCCTTEEEEESCHHHH-------HHHHH-----------HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHH
T ss_pred cCCCccceEEEECCHHHH-------HHHHH-----------HhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHH
Confidence 987622466655443211 11110 0245899999998872 24557788899
Q ss_pred hccCCeEEEEeccCCCc-HHHHHHHHHh
Q 041459 172 YAKPGAVVGISGILSEQ-LPHIINRYSE 198 (225)
Q Consensus 172 ~LkpgG~l~~~~~~~~~-~~~~~~~~~~ 198 (225)
.|+|||++++++..... ...+.+.+.+
T Consensus 320 ~L~pgG~l~~~~~~~~~~~~~~~~~i~~ 347 (385)
T 2b78_A 320 ILSENGLIIASTNAANMTVSQFKKQIEK 347 (385)
T ss_dssp TEEEEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCcCCHHHHHHHHHH
Confidence 99999999998765433 3444444443
No 19
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=99.64 E-value=1.1e-15 Score=129.24 Aligned_cols=136 Identities=20% Similarity=0.289 Sum_probs=105.8
Q ss_pred CCCCcceeEEecccc-eecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Q 041459 21 PPDVQATNIILNPGL-AFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 21 ~~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~ 99 (225)
.+.+.++.+.+|+.. .|.++. ..-...+...+++|.+|||+|||+|.+++.+++.+..+|+++|++|.+++.+++
T Consensus 91 ~~~E~G~~~~~D~~k~~f~~~~----~~er~ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~ 166 (278)
T 3k6r_A 91 VHVENGIKYKLDVAKIMFSPAN----VKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVE 166 (278)
T ss_dssp EEEETTEEEEEETTTSCCCGGG----HHHHHHHHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHH
T ss_pred EEEECCEEEEEeccceEEcCCc----HHHHHHHHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHH
Confidence 346788889999873 443332 222334556677899999999999999999999888899999999999999999
Q ss_pred HHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEE
Q 041459 100 NAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVV 179 (225)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l 179 (225)
|+..|++. +.+.+...|...+. ..+.||.|++|+|... ..++..+.++||+||++
T Consensus 167 N~~~N~v~-~~v~~~~~D~~~~~-----------------------~~~~~D~Vi~~~p~~~-~~~l~~a~~~lk~gG~i 221 (278)
T 3k6r_A 167 NIHLNKVE-DRMSAYNMDNRDFP-----------------------GENIADRILMGYVVRT-HEFIPKALSIAKDGAII 221 (278)
T ss_dssp HHHHTTCT-TTEEEECSCTTTCC-----------------------CCSCEEEEEECCCSSG-GGGHHHHHHHEEEEEEE
T ss_pred HHHHcCCC-CcEEEEeCcHHHhc-----------------------cccCCCEEEECCCCcH-HHHHHHHHHHcCCCCEE
Confidence 99999987 46777776665442 4578999999987643 35667788999999998
Q ss_pred EEeccC
Q 041459 180 GISGIL 185 (225)
Q Consensus 180 ~~~~~~ 185 (225)
.+.++.
T Consensus 222 h~~~~~ 227 (278)
T 3k6r_A 222 HYHNTV 227 (278)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 776553
No 20
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.64 E-value=8e-16 Score=123.70 Aligned_cols=110 Identities=17% Similarity=0.172 Sum_probs=82.3
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||+|.+++.++..+..+++|+|+|+.+++.|++++..+++....+.+...+...+. ...
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~-------~~~----- 120 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL-------KQP----- 120 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT-------TSC-----
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHH-------Hhh-----
Confidence 67899999999999999877777778999999999999999999888863123555544322110 000
Q ss_pred cccccCCCCCCc-eeEEEeccchh--HHHHHHHHH--HHhccCCeEEEEeccCCC
Q 041459 138 SHEIRGISETEK-YDVVIANILLN--PLLQLADHI--VSYAKPGAVVGISGILSE 187 (225)
Q Consensus 138 ~~~~~~~~~~~~-~DvIi~~~~~~--~~~~~l~~~--~~~LkpgG~l~~~~~~~~ 187 (225)
..++ ||+|++++++. ....++..+ .++|||||.+++++....
T Consensus 121 --------~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 121 --------QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp --------CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred --------ccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 2467 99999999853 456677777 567999999999765443
No 21
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.64 E-value=1.7e-14 Score=121.23 Aligned_cols=149 Identities=14% Similarity=0.166 Sum_probs=104.4
Q ss_pred eeEEecccceecCCCCchHHHHHHHHHhhc-cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459 27 TNIILNPGLAFGTGEHATTKLCLLLLQSLI-KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALN 104 (225)
Q Consensus 27 ~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~-~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~ 104 (225)
..+.++++... .++.+..+.+.+.... .++.+|||+|||+|.+++.+++ .+..+++|+|+|+.+++.|++|+..+
T Consensus 80 ~~~~~~~~~~i---pr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~ 156 (276)
T 2b3t_A 80 LPLFVSPATLI---PRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL 156 (276)
T ss_dssp EEEECCTTSCC---CCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH
T ss_pred ceEEeCCCCcc---cCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 34455555332 3444444444443333 4678999999999999999885 56778999999999999999999888
Q ss_pred CCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch-------------------------
Q 041459 105 NIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL------------------------- 159 (225)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~------------------------- 159 (225)
++. ++.+...+.... . +.++||+|++|+|+
T Consensus 157 ~~~--~v~~~~~d~~~~----------~-------------~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~ 211 (276)
T 2b3t_A 157 AIK--NIHILQSDWFSA----------L-------------AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAAD 211 (276)
T ss_dssp TCC--SEEEECCSTTGG----------G-------------TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHH
T ss_pred CCC--ceEEEEcchhhh----------c-------------ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCC
Confidence 765 245544433211 0 35689999999876
Q ss_pred ---hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhc
Q 041459 160 ---NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDIL 204 (225)
Q Consensus 160 ---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 204 (225)
..+..++..+.++|||||.+++. ....+..++.+.+++. |..+.
T Consensus 212 ~g~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~l~~~Gf~~v~ 259 (276)
T 2b3t_A 212 SGMADIVHIIEQSRNALVSGGFLLLE-HGWQQGEAVRQAFILAGYHDVE 259 (276)
T ss_dssp HHTHHHHHHHHHHGGGEEEEEEEEEE-CCSSCHHHHHHHHHHTTCTTCC
T ss_pred cHHHHHHHHHHHHHHhcCCCCEEEEE-ECchHHHHHHHHHHHCCCcEEE
Confidence 23467889999999999999985 4455666777777654 54443
No 22
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=99.63 E-value=2.1e-15 Score=133.37 Aligned_cols=143 Identities=15% Similarity=0.143 Sum_probs=111.8
Q ss_pred CcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
+.+..+.+++...+.+|.+..++....++... .++.+|||+|||+|.+++.+++.+..+++|+|+++.+++.|++|+..
T Consensus 187 ~~g~~f~v~~~~~~~tgff~~~~~~~~~l~~~-~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ 265 (396)
T 3c0k_A 187 EHGMKLLVDIQHGHKTGYYLDQRDSRLATRRY-VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL 265 (396)
T ss_dssp ETTEEEEECTTTSSTTSSCGGGHHHHHHHHHH-CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred ECCEEEEEeccccccCCcCcCHHHHHHHHHHh-hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 45677888888777788888877777777665 47889999999999999999998878999999999999999999999
Q ss_pred cCC-CCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch------------hHHHHHHHHHH
Q 041459 104 NNI-GPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL------------NPLLQLADHIV 170 (225)
Q Consensus 104 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~------------~~~~~~l~~~~ 170 (225)
+++ . +++.+...+...+ ...+. ....+||+|++++|. ..+..++..+.
T Consensus 266 ngl~~-~~v~~~~~D~~~~-------~~~~~-----------~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~ 326 (396)
T 3c0k_A 266 NKLDL-SKAEFVRDDVFKL-------LRTYR-----------DRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAI 326 (396)
T ss_dssp TTCCG-GGEEEEESCHHHH-------HHHHH-----------HTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHH
T ss_pred cCCCc-cceEEEECCHHHH-------HHHHH-----------hcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHH
Confidence 887 4 2455555443211 11100 014689999999987 56778899999
Q ss_pred HhccCCeEEEEeccCC
Q 041459 171 SYAKPGAVVGISGILS 186 (225)
Q Consensus 171 ~~LkpgG~l~~~~~~~ 186 (225)
+.|+|||++++++...
T Consensus 327 ~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 327 QLLNEGGILLTFSCSG 342 (396)
T ss_dssp HTEEEEEEEEEEECCT
T ss_pred HhcCCCcEEEEEeCCC
Confidence 9999999999976654
No 23
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.63 E-value=1e-14 Score=128.26 Aligned_cols=164 Identities=15% Similarity=0.170 Sum_probs=108.6
Q ss_pred ceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN 104 (225)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~ 104 (225)
+..+...|+.....+.....+.++..+.. .++.+|||+|||+|.+++.+++. +..+++++|+++.+++.|++|+..+
T Consensus 192 ~~~~~~~pg~Fs~~~~d~~~~~ll~~l~~--~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~n 269 (375)
T 4dcm_A 192 DWTIHNHANVFSRTGLDIGARFFMQHLPE--NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN 269 (375)
T ss_dssp TEEEEECTTCTTCSSCCHHHHHHHHTCCC--SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred ceEEEeCCCcccCCcccHHHHHHHHhCcc--cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHc
Confidence 35555666654444555555555444422 24589999999999999998875 4678999999999999999999988
Q ss_pred CCCC-CcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--------HHHHHHHHHHhccC
Q 041459 105 NIGP-KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------LLQLADHIVSYAKP 175 (225)
Q Consensus 105 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------~~~~l~~~~~~Lkp 175 (225)
++.. ..+.+...+.... .+.++||+|++|+|++. ...++..+.+.|||
T Consensus 270 gl~~~~~v~~~~~D~~~~-----------------------~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp 326 (375)
T 4dcm_A 270 MPEALDRCEFMINNALSG-----------------------VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI 326 (375)
T ss_dssp CGGGGGGEEEEECSTTTT-----------------------CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEE
T ss_pred CCCcCceEEEEechhhcc-----------------------CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC
Confidence 8652 1244454443221 04568999999999864 23578999999999
Q ss_pred CeEEEEeccCCCcHHHHHHHHHhhhhhhcc-cccCCceEEEee
Q 041459 176 GAVVGISGILSEQLPHIINRYSEFLEDILL-SEMDDWTCVSGT 217 (225)
Q Consensus 176 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~ 217 (225)
||.+++++........ .+.+.|...+. .....|+-+...
T Consensus 327 gG~l~iv~n~~~~~~~---~l~~~fg~~~~~a~~~~F~V~~~~ 366 (375)
T 4dcm_A 327 NGELYIVANRHLDYFH---KLKKIFGNCTTIATNNKFVVLKAV 366 (375)
T ss_dssp EEEEEEEEETTSCHHH---HHHHHHSCCEEEEECSSEEEEEEE
T ss_pred CcEEEEEEECCcCHHH---HHHHhcCCEEEEeeCCCEEEEEEc
Confidence 9999997665443332 33333433332 333445444433
No 24
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.63 E-value=3.1e-15 Score=124.73 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=88.9
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+.++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++...++. .++.+...+...++.
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~------------ 110 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQ-NRVTGIVGSMDDLPF------------ 110 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCCC------------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCC-cCcEEEEcChhhCCC------------
Confidence 3568999999999999999999887778999999999999999999888875 356777766654421
Q ss_pred cccccccCCCCCCceeEEEeccchhH--HHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP--LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+.++||+|+++.++++ ...+++.+.++|||||.+++++.
T Consensus 111 ----------~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 111 ----------RNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp ----------CTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred ----------CCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence 4678999999888765 46789999999999999998754
No 25
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=99.62 E-value=5.3e-15 Score=130.68 Aligned_cols=141 Identities=23% Similarity=0.286 Sum_probs=107.0
Q ss_pred cceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459 25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN 104 (225)
Q Consensus 25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~ 104 (225)
.+..+.+++ ..+.+|.+..++....++....+++.+|||+|||+|.+++.+++.+..+++|+|+++.+++.|++|+..+
T Consensus 185 ~g~~~~~~~-~~~~tg~f~~~~~~~~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n 263 (396)
T 2as0_A 185 GRAKFIVDM-RGQKTGFFLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLN 263 (396)
T ss_dssp TTEEEEEES-SSSSSCCCSTTHHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred CCEEEEEec-cccccCccCCHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 567777888 5566677776766667776665578999999999999999999888889999999999999999999998
Q ss_pred CCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch------------hHHHHHHHHHHHh
Q 041459 105 NIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL------------NPLLQLADHIVSY 172 (225)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~------------~~~~~~l~~~~~~ 172 (225)
++. +.+.+...+...+ ...+. ....+||+|++++|. ..+..++..+.++
T Consensus 264 ~~~-~~v~~~~~d~~~~-------~~~~~-----------~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (396)
T 2as0_A 264 GVE-DRMKFIVGSAFEE-------MEKLQ-----------KKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNL 324 (396)
T ss_dssp TCG-GGEEEEESCHHHH-------HHHHH-----------HTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTT
T ss_pred CCC-ccceEEECCHHHH-------HHHHH-----------hhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 875 2455555443211 00000 024689999999986 4467788999999
Q ss_pred ccCCeEEEEeccC
Q 041459 173 AKPGAVVGISGIL 185 (225)
Q Consensus 173 LkpgG~l~~~~~~ 185 (225)
|+|||.+++++..
T Consensus 325 LkpgG~lv~~~~~ 337 (396)
T 2as0_A 325 VKDGGILVTCSCS 337 (396)
T ss_dssp EEEEEEEEEEECC
T ss_pred cCCCcEEEEEECC
Confidence 9999988776443
No 26
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=99.62 E-value=4.9e-15 Score=139.71 Aligned_cols=142 Identities=17% Similarity=0.185 Sum_probs=114.9
Q ss_pred CCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 22 PDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 22 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
..+.+..+.+++...+++|.+..++....++.... +|++|||+|||||.+++.+++.++.+|+++|+|+.+++.|++|+
T Consensus 504 v~E~g~~~~v~~~~~~~tG~f~d~r~~r~~l~~~~-~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~ 582 (703)
T 3v97_A 504 VTEYNAHLWVNLTDYLDTGLFLDHRIARRMLGQMS-KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNL 582 (703)
T ss_dssp EEETTEEEEECSSSSSSCSCCGGGHHHHHHHHHHC-TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH
T ss_pred EEECCEEEEEeccccccCCCcccHHHHHHHHHHhc-CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence 34567788888888889999999998888887654 68999999999999999999888888999999999999999999
Q ss_pred HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch--------------hHHHHHHH
Q 041459 102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL--------------NPLLQLAD 167 (225)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~--------------~~~~~~l~ 167 (225)
..+++..+++.+...+...+ +. . ..++||+|++++|. ..+..++.
T Consensus 583 ~~ngl~~~~v~~i~~D~~~~-----------l~--------~--~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~ 641 (703)
T 3v97_A 583 RLNGLTGRAHRLIQADCLAW-----------LR--------E--ANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMK 641 (703)
T ss_dssp HHTTCCSTTEEEEESCHHHH-----------HH--------H--CCCCEEEEEECCCSBC-------CCBHHHHHHHHHH
T ss_pred HHcCCCccceEEEecCHHHH-----------HH--------h--cCCCccEEEECCccccCCccchhHHHHHHHHHHHHH
Confidence 99998644566665443211 00 0 34689999999984 23567899
Q ss_pred HHHHhccCCeEEEEeccC
Q 041459 168 HIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 168 ~~~~~LkpgG~l~~~~~~ 185 (225)
.+.++|+|||++++++..
T Consensus 642 ~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 642 DLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp HHHHHEEEEEEEEEEECC
T ss_pred HHHHhcCCCcEEEEEECC
Confidence 999999999999998765
No 27
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.62 E-value=1.3e-14 Score=117.01 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=106.5
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
..++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++...++. .+.+...+...++.
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~---------- 102 (219)
T 3dh0_A 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK--NVEVLKSEENKIPL---------- 102 (219)
T ss_dssp CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT--TEEEEECBTTBCSS----------
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEecccccCCC----------
Confidence 446889999999999999998875 3568999999999999999999887765 36666665544321
Q ss_pred cccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCC------------CcHHHHHHHHHh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILS------------EQLPHIINRYSE 198 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~------------~~~~~~~~~~~~ 198 (225)
+.++||+|+++..+++ ...+++++.++|||||.+++.++.. ....++...+++
T Consensus 103 ------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 170 (219)
T 3dh0_A 103 ------------PDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILED 170 (219)
T ss_dssp ------------CSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHH
T ss_pred ------------CCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHH
Confidence 4678999999888765 4778999999999999999975432 234667777776
Q ss_pred h-hhhhcccc-cCCceEEEeeeecc
Q 041459 199 F-LEDILLSE-MDDWTCVSGTKKRA 221 (225)
Q Consensus 199 ~-~~~~~~~~-~~~w~~~~~~k~~~ 221 (225)
. |+.+.... .+.|..+.++|+..
T Consensus 171 ~Gf~~~~~~~~~~~~~~~~~~k~~~ 195 (219)
T 3dh0_A 171 AGIRVGRVVEVGKYCFGVYAMIVKQ 195 (219)
T ss_dssp TTCEEEEEEEETTTEEEEEEECC--
T ss_pred CCCEEEEEEeeCCceEEEEEEeccc
Confidence 5 76555433 34567777777654
No 28
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.62 E-value=1.3e-15 Score=119.16 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=82.4
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++..+++. .++.+...+.... ...
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~-------~~~----- 96 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE-NRFTLLKMEAERA-------IDC----- 96 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG-GGEEEECSCHHHH-------HHH-----
T ss_pred cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEEECcHHHh-------HHh-----
Confidence 367899999999999999988887789999999999999999999877764 2344544332110 000
Q ss_pred ccccccCCCCCCceeEEEeccchh--HHHHHHHHHH--HhccCCeEEEEeccCCC
Q 041459 137 SSHEIRGISETEKYDVVIANILLN--PLLQLADHIV--SYAKPGAVVGISGILSE 187 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~--~~LkpgG~l~~~~~~~~ 187 (225)
....||+|++++++. .....+..+. ++|||||.+++.+....
T Consensus 97 ---------~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 97 ---------LTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp ---------BCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred ---------hcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 235699999999873 3456667776 89999999999766543
No 29
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.62 E-value=8e-15 Score=124.50 Aligned_cols=106 Identities=10% Similarity=0.077 Sum_probs=87.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
++++.+|||+|||+|.++..+++. + .+++|+|+|+.+++.|+++....++. +++.+...+...
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~-------------- 133 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSP-RRKEVRIQGWEE-------------- 133 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCS-SCEEEEECCGGG--------------
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECCHHH--------------
Confidence 457889999999999999998876 6 77999999999999999999888765 345565544322
Q ss_pred ccccccccCCCCCCceeEEEeccchhHH------------HHHHHHHHHhccCCeEEEEeccCCCc
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPL------------LQLADHIVSYAKPGAVVGISGILSEQ 188 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~------------~~~l~~~~~~LkpgG~l~~~~~~~~~ 188 (225)
.+++||+|+++.++++. ..++.++.++|||||.+++.++....
T Consensus 134 -----------~~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 188 (302)
T 3hem_A 134 -----------FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD 188 (302)
T ss_dssp -----------CCCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCC
T ss_pred -----------cCCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccC
Confidence 15689999998887666 78899999999999999997765443
No 30
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.62 E-value=3.8e-15 Score=124.42 Aligned_cols=131 Identities=12% Similarity=0.018 Sum_probs=88.9
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC---------------------------
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK--------------------------- 109 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~--------------------------- 109 (225)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++..+....+
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 46789999999999888887777777899999999999999988754321100
Q ss_pred cce-EEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHH-------HHHHHHHHHhccCCeEEEE
Q 041459 110 KMK-LHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL-------LQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 110 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~-------~~~l~~~~~~LkpgG~l~~ 181 (225)
.+. +...+..... . +.. ...++||+|+++..+++. ..++.+++++|||||.+++
T Consensus 134 ~i~~~~~~D~~~~~--------~---------~~~-~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~ 195 (263)
T 2a14_A 134 AVKRVLKCDVHLGN--------P---------LAP-AVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVT 195 (263)
T ss_dssp HEEEEEECCTTSSS--------T---------TTT-CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhheEEeccccCCC--------C---------CCc-cccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 011 2222221100 0 000 024589999999887653 5689999999999999999
Q ss_pred eccCCC---------------cHHHHHHHHHhh-hhhhcc
Q 041459 182 SGILSE---------------QLPHIINRYSEF-LEDILL 205 (225)
Q Consensus 182 ~~~~~~---------------~~~~~~~~~~~~-~~~~~~ 205 (225)
++.... ...++.+.+.+. |..+..
T Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~ 235 (263)
T 2a14_A 196 TVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQL 235 (263)
T ss_dssp EEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred EEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEE
Confidence 854321 455677777764 654444
No 31
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.62 E-value=6.9e-15 Score=125.21 Aligned_cols=146 Identities=21% Similarity=0.190 Sum_probs=106.2
Q ss_pred HHHHhhccCCCcEEEEcccccHHHHHHH--hcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459 50 LLLQSLIKGGELFLDYGTGSGILGIAAI--KFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 50 ~~L~~~~~~~~~vlDiGcGtG~~~~~l~--~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
..+...+.++.+|||+|||+|.++..++ ..+..+++|+|+++.+++.|+++....++. +++.+...+....+
T Consensus 110 ~~l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~----- 183 (305)
T 3ocj_A 110 RALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA-GQITLHRQDAWKLD----- 183 (305)
T ss_dssp HHHHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTG-GGEEEEECCGGGCC-----
T ss_pred HHHHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECchhcCC-----
Confidence 3333445678999999999999999874 456778999999999999999999877765 34666665544332
Q ss_pred cccccccccccccccCCCCCCceeEEEeccchhH------HHHHHHHHHHhccCCeEEEEeccCC---------------
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNP------LLQLADHIVSYAKPGAVVGISGILS--------------- 186 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~--------------- 186 (225)
..+.||+|+++.++++ ...+++.+.+.|||||.++++++..
T Consensus 184 ------------------~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~ 245 (305)
T 3ocj_A 184 ------------------TREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAI 245 (305)
T ss_dssp ------------------CCSCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGS
T ss_pred ------------------ccCCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeecc
Confidence 2378999999887754 2347999999999999999876431
Q ss_pred -----------------------CcHHHHHHHHHhh-hhhhccc--ccCCceEEEeeee
Q 041459 187 -----------------------EQLPHIINRYSEF-LEDILLS--EMDDWTCVSGTKK 219 (225)
Q Consensus 187 -----------------------~~~~~~~~~~~~~-~~~~~~~--~~~~w~~~~~~k~ 219 (225)
....++.+.+++. |..+... ..+.|..+.++|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 246 DPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp CHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred ccchhhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 1345566666654 6554443 4456778888775
No 32
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.61 E-value=7.8e-15 Score=127.28 Aligned_cols=165 Identities=16% Similarity=0.177 Sum_probs=107.3
Q ss_pred eeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 27 ~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
..+...|++............++..+. ..++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.|++++..++
T Consensus 167 ~~~~~~~gvf~~~~~d~~~~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~ 244 (343)
T 2pjd_A 167 LTVKTLPGVFSRDGLDVGSQLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANG 244 (343)
T ss_dssp EEEEECTTCTTSSSCCHHHHHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTT
T ss_pred eEEEecCCccCCCCCcHHHHHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC
Confidence 344445554322222333444444442 2356799999999999999988764 4589999999999999999998877
Q ss_pred CCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--------HHHHHHHHHHhccCCe
Q 041459 106 IGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------LLQLADHIVSYAKPGA 177 (225)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------~~~~l~~~~~~LkpgG 177 (225)
+. ..+...+.... ..++||+|++|++++. ...++..+.+.|||||
T Consensus 245 ~~---~~~~~~d~~~~------------------------~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG 297 (343)
T 2pjd_A 245 VE---GEVFASNVFSE------------------------VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGG 297 (343)
T ss_dssp CC---CEEEECSTTTT------------------------CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEE
T ss_pred CC---CEEEEcccccc------------------------ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCc
Confidence 64 23444333221 3568999999998753 4568999999999999
Q ss_pred EEEEeccCCCcHHHHHHHHHhhhhhhc-ccccCCceEEEeeeecccc
Q 041459 178 VVGISGILSEQLPHIINRYSEFLEDIL-LSEMDDWTCVSGTKKRAKE 223 (225)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~k~~~~~ 223 (225)
.+++.......... .+...+.... ......+.-+..+|.+.+.
T Consensus 298 ~l~i~~~~~~~~~~---~l~~~f~~~~~~~~~~gf~v~~~~k~r~~~ 341 (343)
T 2pjd_A 298 ELRIVANAFLPYPD---VLDETFGFHEVIAQTGRFKVYRAIMTRQAK 341 (343)
T ss_dssp EEEEEEETTSSHHH---HHHHHHSCCEEEEECSSEEEEEEEC-----
T ss_pred EEEEEEcCCCCcHH---HHHHhcCceEEEeeCCCEEEEEEEeCCCcc
Confidence 99997554433333 2333333223 3455677777777776654
No 33
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.61 E-value=8.6e-15 Score=120.00 Aligned_cols=145 Identities=13% Similarity=0.174 Sum_probs=107.1
Q ss_pred HHHHHhhccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459 49 LLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 49 ~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
++.+...++++.+|+|+|||+|.+++.+++.+ ..+++|+|+++.+++.|++|+..+++. +++.+...++-.
T Consensus 6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~-~~i~~~~~d~l~------- 77 (225)
T 3kr9_A 6 LELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK-EKIQVRLANGLA------- 77 (225)
T ss_dssp HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT-TTEEEEECSGGG-------
T ss_pred HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEECchhh-------
Confidence 45666778889999999999999999999875 578999999999999999999999987 456776655411
Q ss_pred cccccccccccccccCCCCCCceeEEEeccch-hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhcc
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILL-NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILL 205 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 205 (225)
.+.+..+||+|++..+. ..+..+++.....|+++|.++++.. .....+++.+.+. |..++.
T Consensus 78 ---------------~l~~~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~--~~~~~vr~~L~~~Gf~i~~e 140 (225)
T 3kr9_A 78 ---------------AFEETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPN--NREDDLRIWLQDHGFQIVAE 140 (225)
T ss_dssp ---------------GCCGGGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEES--SCHHHHHHHHHHTTEEEEEE
T ss_pred ---------------hcccCcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECC--CCHHHHHHHHHHCCCEEEEE
Confidence 11122369988765443 4478899999999999999999765 4677787777765 544433
Q ss_pred ---cccCCceEEEeee
Q 041459 206 ---SEMDDWTCVSGTK 218 (225)
Q Consensus 206 ---~~~~~w~~~~~~k 218 (225)
.+.+.|..+...+
T Consensus 141 ~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 141 SILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEETTEEEEEEEEE
T ss_pred EEEEECCEEEEEEEEE
Confidence 2344454444333
No 34
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=99.61 E-value=5e-15 Score=124.62 Aligned_cols=133 Identities=15% Similarity=0.187 Sum_probs=98.2
Q ss_pred cceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
.+..+.++|...|......+... ..+ ..+.++.+|||+|||+|.+++.+++. +..+++|+|+++.+++.|++|+..
T Consensus 89 ~g~~f~~~~~~~f~~~~~~~e~~--~~~-~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~ 165 (272)
T 3a27_A 89 YGCLFKLDVAKIMWSQGNIEERK--RMA-FISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKL 165 (272)
T ss_dssp TTEEEEEETTTSCCCGGGHHHHH--HHH-TSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred CCEEEEEechhEEECCCchHHHH--HHH-HhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 56677778775433222222222 222 33567899999999999999998876 567899999999999999999999
Q ss_pred cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+++.+ +.+...+...+ . ...+||+|++++|. ....++..+.+.|||||+++++|
T Consensus 166 n~l~~--~~~~~~d~~~~-~----------------------~~~~~D~Vi~d~p~-~~~~~l~~~~~~LkpgG~l~~s~ 219 (272)
T 3a27_A 166 NKLNN--VIPILADNRDV-E----------------------LKDVADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHE 219 (272)
T ss_dssp TTCSS--EEEEESCGGGC-C----------------------CTTCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEE
T ss_pred cCCCC--EEEEECChHHc-C----------------------ccCCceEEEECCcc-cHHHHHHHHHHHcCCCCEEEEEE
Confidence 98764 44555443222 0 24579999999987 45667888899999999999998
Q ss_pred cCC
Q 041459 184 ILS 186 (225)
Q Consensus 184 ~~~ 186 (225)
+..
T Consensus 220 ~~~ 222 (272)
T 3a27_A 220 TVA 222 (272)
T ss_dssp EEE
T ss_pred cCc
Confidence 865
No 35
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=99.61 E-value=6.9e-15 Score=129.46 Aligned_cols=140 Identities=17% Similarity=0.207 Sum_probs=108.3
Q ss_pred CcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
+.+..+.+++...+.+|.+..++....++... ++.+|||+|||+|.+++.+++. ..+++++|+++.+++.|++|+..
T Consensus 177 e~g~~f~i~~~~~~~~g~f~~~~~~~~~~~~~--~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~ 253 (382)
T 1wxx_A 177 EGRVRYLVDLRAGQKTGAYLDQRENRLYMERF--RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARL 253 (382)
T ss_dssp ETTEEEEEECSTTSCCCCCGGGHHHHHHGGGC--CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHH
T ss_pred ECCEEEEEEchhcccCccccchHHHHHHHHhc--CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHH
Confidence 35677788888777778877777777777666 6889999999999999998887 67899999999999999999999
Q ss_pred cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch------------hHHHHHHHHHHH
Q 041459 104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL------------NPLLQLADHIVS 171 (225)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~------------~~~~~~l~~~~~ 171 (225)
+++.+ +.+...+...+ ...+. ....+||+|++++|. ..+..++..+.+
T Consensus 254 n~~~~--~~~~~~d~~~~-------~~~~~-----------~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (382)
T 1wxx_A 254 NGLGN--VRVLEANAFDL-------LRRLE-----------KEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIK 313 (382)
T ss_dssp TTCTT--EEEEESCHHHH-------HHHHH-----------HTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHH
T ss_pred cCCCC--ceEEECCHHHH-------HHHHH-----------hcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence 98764 55555443211 11000 025689999999986 446678999999
Q ss_pred hccCCeEEEEeccCC
Q 041459 172 YAKPGAVVGISGILS 186 (225)
Q Consensus 172 ~LkpgG~l~~~~~~~ 186 (225)
+|+|||.+++++...
T Consensus 314 ~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 314 LLKEGGILATASCSH 328 (382)
T ss_dssp TEEEEEEEEEEECCT
T ss_pred hcCCCCEEEEEECCC
Confidence 999999999976543
No 36
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.61 E-value=8.5e-15 Score=114.95 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=99.5
Q ss_pred chHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC
Q 041459 43 ATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120 (225)
Q Consensus 43 ~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 120 (225)
++...+...+... ..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.|++++..+++. ..+.+...+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~ 93 (192)
T 1l3i_A 16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLG-DNVTLMEGDAPE 93 (192)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCC-TTEEEEESCHHH
T ss_pred CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCC-cceEEEecCHHH
Confidence 3344444443332 4568899999999999999998877 78999999999999999999887763 234444433211
Q ss_pred CCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
.+ .....||+|+++.+++++..+++.+.++|+|||.+++..........+.+.+++.
T Consensus 94 ----------~~------------~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~ 150 (192)
T 1l3i_A 94 ----------AL------------CKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDL 150 (192)
T ss_dssp ----------HH------------TTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHT
T ss_pred ----------hc------------ccCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHC
Confidence 00 0225799999999888889999999999999999999877666666677676654
No 37
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.61 E-value=7.6e-15 Score=114.92 Aligned_cols=127 Identities=19% Similarity=0.135 Sum_probs=94.7
Q ss_pred CCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC
Q 041459 41 EHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120 (225)
Q Consensus 41 ~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 120 (225)
+.+.+..+.+.+.....++.+|||+|||+|.++..+++.+ +++|+|+++.+++. . ..+.+...+...
T Consensus 6 P~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~------~-----~~~~~~~~d~~~ 72 (170)
T 3q87_B 6 PGEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES------H-----RGGNLVRADLLC 72 (170)
T ss_dssp CCHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT------C-----SSSCEEECSTTT
T ss_pred cCccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc------c-----cCCeEEECChhh
Confidence 3455666666665433467899999999999999999887 89999999999977 1 234566655433
Q ss_pred CCccccccccccccccccccccCCCCCCceeEEEeccchhH------------HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP------------LLQLADHIVSYAKPGAVVGISGILSEQ 188 (225)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~~~~~ 188 (225)
. . +.++||+|++|+++.+ ....+..+.+.+ |||.+++.+.....
T Consensus 73 ~-~----------------------~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~ 128 (170)
T 3q87_B 73 S-I----------------------NQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANR 128 (170)
T ss_dssp T-B----------------------CGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGC
T ss_pred h-c----------------------ccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCC
Confidence 2 0 3478999999999863 345777888888 99999998777778
Q ss_pred HHHHHHHHHhh-hhhhc
Q 041459 189 LPHIINRYSEF-LEDIL 204 (225)
Q Consensus 189 ~~~~~~~~~~~-~~~~~ 204 (225)
..++.+.+++. |....
T Consensus 129 ~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 129 PKEVLARLEERGYGTRI 145 (170)
T ss_dssp HHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHCCCcEEE
Confidence 88888888765 54333
No 38
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.60 E-value=3.3e-15 Score=120.16 Aligned_cols=134 Identities=16% Similarity=0.143 Sum_probs=89.7
Q ss_pred ceeEEecccceecCCCCchHHHHHHHHHhhc---cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~---~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
+..+..+++.. .+++...+.+.+...+ .++.+|||+|||+|.+++.+++.+..+|+++|+++.+++.|++++.
T Consensus 23 g~~l~~~~~~~----~rp~~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~ 98 (202)
T 2fpo_A 23 GRKLPVPDSPG----LRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLA 98 (202)
T ss_dssp TCEEECCCC----------CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHH
T ss_pred CcEecCCCCCC----CCCCHHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHH
Confidence 34555544432 3444444444332221 1678999999999999998877777789999999999999999998
Q ss_pred hcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh--HHHHHHHHHHH--hccCCeE
Q 041459 103 LNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--PLLQLADHIVS--YAKPGAV 178 (225)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~--~LkpgG~ 178 (225)
.+++. .+.+...+...+ + . ...++||+|+++++++ ....+++.+.+ +|+|||+
T Consensus 99 ~~~~~--~v~~~~~D~~~~-----------~--------~--~~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~ 155 (202)
T 2fpo_A 99 TLKAG--NARVVNSNAMSF-----------L--------A--QKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEAL 155 (202)
T ss_dssp HTTCC--SEEEECSCHHHH-----------H--------S--SCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEE
T ss_pred HcCCC--cEEEEECCHHHH-----------H--------h--hcCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcE
Confidence 88763 355554432111 0 0 0346899999999854 35566777765 5999999
Q ss_pred EEEeccCC
Q 041459 179 VGISGILS 186 (225)
Q Consensus 179 l~~~~~~~ 186 (225)
+++++...
T Consensus 156 l~i~~~~~ 163 (202)
T 2fpo_A 156 IYVESEVE 163 (202)
T ss_dssp EEEEEEGG
T ss_pred EEEEECCC
Confidence 99976543
No 39
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.60 E-value=1.3e-14 Score=120.32 Aligned_cols=104 Identities=20% Similarity=0.212 Sum_probs=84.8
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|++++...++. .+.+...+...++.
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~l~~------------- 99 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQ--QVEYVQGDAEQMPF------------- 99 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCC-CCCS-------------
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEecHHhCCC-------------
Confidence 4688999999999999999888754 8999999999999999998877754 36666666554422
Q ss_pred ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
++++||+|+++..+++ ...++.++.++|||||.+++.+..
T Consensus 100 ---------~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~ 142 (260)
T 1vl5_A 100 ---------TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS 142 (260)
T ss_dssp ---------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ---------CCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 4678999999987765 467899999999999999996543
No 40
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.60 E-value=1.1e-14 Score=120.22 Aligned_cols=106 Identities=18% Similarity=0.250 Sum_probs=88.1
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+.++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++..+++. +++.+...+...++.
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~------------ 110 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA-DRVKGITGSMDNLPF------------ 110 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCSS------------
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCC-CceEEEECChhhCCC------------
Confidence 3467899999999999999988875558999999999999999999888876 356777766655422
Q ss_pred cccccccCCCCCCceeEEEeccchhH--HHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP--LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+.++||+|+++..+++ ...++..+.++|||||.+++++.
T Consensus 111 ----------~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 111 ----------QNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp ----------CTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ----------CCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4678999999877765 67789999999999999999753
No 41
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.60 E-value=6.5e-16 Score=123.69 Aligned_cols=158 Identities=13% Similarity=0.078 Sum_probs=86.8
Q ss_pred CchHHHHHHHHHhhc---cCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEec
Q 041459 42 HATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVP 117 (225)
Q Consensus 42 ~~~~~~~~~~L~~~~---~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~ 117 (225)
++.+..+.+.+.... .++.+|||+|||+|.++..+++.. ..+++|+|+++.+++.|++++..++. .+.+...+
T Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~d 87 (215)
T 4dzr_A 11 RPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA---VVDWAAAD 87 (215)
T ss_dssp CHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------------CCHHH
T ss_pred CccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC---ceEEEEcc
Confidence 344455555444332 568899999999999999988764 45899999999999999999876654 12232222
Q ss_pred CCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-----------------------------HHHHHHH
Q 041459 118 DRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----------------------------LLQLADH 168 (225)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----------------------------~~~~l~~ 168 (225)
... .+ .. .....++||+|++|+|+.. +..+++.
T Consensus 88 ~~~----------~~-~~-------~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (215)
T 4dzr_A 88 GIE----------WL-IE-------RAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAAL 149 (215)
T ss_dssp HHH----------HH-HH-------HHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTC
T ss_pred hHh----------hh-hh-------hhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHH
Confidence 110 00 00 0001378999999988632 1567788
Q ss_pred HHHhccCCeEEEEeccCCCcHHHHHHHHH--hh-hhhhccc--ccCCceEEEeeeec
Q 041459 169 IVSYAKPGAVVGISGILSEQLPHIINRYS--EF-LEDILLS--EMDDWTCVSGTKKR 220 (225)
Q Consensus 169 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~--~~-~~~~~~~--~~~~w~~~~~~k~~ 220 (225)
+.++|||||.+++..........+.+.+. +. |..+... ..+..+.+.++|+.
T Consensus 150 ~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~~ 206 (215)
T 4dzr_A 150 PPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTREP 206 (215)
T ss_dssp CGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEECC
T ss_pred HHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEcC
Confidence 89999999995454566667777777776 43 5433332 22333455555443
No 42
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.60 E-value=2.4e-14 Score=117.53 Aligned_cols=119 Identities=13% Similarity=0.236 Sum_probs=91.5
Q ss_pred CCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC
Q 041459 41 EHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120 (225)
Q Consensus 41 ~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 120 (225)
.++........+. ++++.+|||+|||+|.++..+++.+ .+++++|+++.+++.|++++..+++. .+.+...+...
T Consensus 6 ~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~ 80 (239)
T 1xxl_A 6 HHHSLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVE--NVRFQQGTAES 80 (239)
T ss_dssp CHHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCC--SEEEEECBTTB
T ss_pred cCCCcchHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC--CeEEEeccccc
Confidence 3444444444442 4578999999999999999988875 47999999999999999998877765 35666655544
Q ss_pred CCccccccccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCC
Q 041459 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (225)
++. ++++||+|+++..+++ ...++.++.++|||||.+++.+...
T Consensus 81 ~~~----------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 81 LPF----------------------PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp CCS----------------------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred CCC----------------------CCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 321 4678999999877754 5678999999999999999976544
No 43
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.59 E-value=1.2e-14 Score=121.50 Aligned_cols=127 Identities=15% Similarity=0.134 Sum_probs=92.6
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh---cCCCCCcceEEEecCCCCCcccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL---NNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
.++.+|||+|||+|.+++.+++. +..+++|+|+++.+++.|++|+.. +++. +++.+...+...+.. ...
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~-~~v~~~~~D~~~~~~---~~~--- 107 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFS-ARIEVLEADVTLRAK---ARV--- 107 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTG-GGEEEEECCTTCCHH---HHH---
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCc-ceEEEEeCCHHHHhh---hhh---
Confidence 35789999999999999998875 457899999999999999999987 6664 346666665543200 000
Q ss_pred ccccccccccCCCCCCceeEEEeccchhH---------------------HHHHHHHHHHhccCCeEEEEeccCCCcHHH
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNP---------------------LLQLADHIVSYAKPGAVVGISGILSEQLPH 191 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 191 (225)
......++||+|++|+|+.. +..++..+.++|||||.+++. .......+
T Consensus 108 ---------~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~ 177 (260)
T 2ozv_A 108 ---------EAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI-SRPQSVAE 177 (260)
T ss_dssp ---------HTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE-ECGGGHHH
T ss_pred ---------hhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE-EcHHHHHH
Confidence 00003568999999988753 456789999999999999884 44556677
Q ss_pred HHHHHHhhh
Q 041459 192 IINRYSEFL 200 (225)
Q Consensus 192 ~~~~~~~~~ 200 (225)
+.+.+++.|
T Consensus 178 ~~~~l~~~~ 186 (260)
T 2ozv_A 178 IIAACGSRF 186 (260)
T ss_dssp HHHHHTTTE
T ss_pred HHHHHHhcC
Confidence 777776543
No 44
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.59 E-value=1.2e-14 Score=113.34 Aligned_cols=120 Identities=15% Similarity=0.111 Sum_probs=91.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
..++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..+++. ..+ ....+.... + .
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~-~~~~d~~~~----------~-~ 89 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVS-DRI-AVQQGAPRA----------F-D 89 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCT-TSE-EEECCTTGG----------G-G
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCC-CCE-EEecchHhh----------h-h
Confidence 446789999999999999998875 5678999999999999999999887765 234 333332110 0 0
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
. ..++||+|+++.++++ ..+++.+.+.|||||.+++.+........+...++..
T Consensus 90 --------~--~~~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~ 143 (178)
T 3hm2_A 90 --------D--VPDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQF 143 (178)
T ss_dssp --------G--CCSCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHH
T ss_pred --------c--cCCCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHc
Confidence 0 1278999999988876 7789999999999999999877666666666666554
No 45
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.59 E-value=4.6e-15 Score=116.56 Aligned_cols=127 Identities=19% Similarity=0.226 Sum_probs=89.3
Q ss_pred CCchHHHHHHHHHhhc---cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEec
Q 041459 41 EHATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVP 117 (225)
Q Consensus 41 ~~~~~~~~~~~L~~~~---~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~ 117 (225)
.+++...+.+.+...+ .++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++..+++. .++.+...+
T Consensus 24 ~rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d 102 (187)
T 2fhp_A 24 TRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP-EKFEVRKMD 102 (187)
T ss_dssp SCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESC
T ss_pred cCcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cceEEEECc
Confidence 3455555544443332 367899999999999999888877788999999999999999999887764 245555443
Q ss_pred CCCCCccccccccccccccccccccCCCCCCceeEEEeccchh--HHHHHHHHH--HHhccCCeEEEEeccCC
Q 041459 118 DRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--PLLQLADHI--VSYAKPGAVVGISGILS 186 (225)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~--~~~LkpgG~l~~~~~~~ 186 (225)
.... ...+ . ....+||+|++++++. .....+..+ .++|||||.+++.....
T Consensus 103 ~~~~-------~~~~-~----------~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 103 ANRA-------LEQF-Y----------EEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHHH-------HHHH-H----------HTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHH-------HHHH-H----------hcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 3211 0000 0 0256899999999864 345566666 78899999999865543
No 46
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.59 E-value=2.1e-14 Score=117.92 Aligned_cols=143 Identities=13% Similarity=0.147 Sum_probs=105.3
Q ss_pred HHHHHhhccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459 49 LLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 49 ~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
++.+...++++.+|+|+|||+|.+++.+++.+ ..+++|+|+++.+++.|++|+..+++. +++.+...++...
T Consensus 12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~-~~I~~~~gD~l~~------ 84 (230)
T 3lec_A 12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT-SKIDVRLANGLSA------ 84 (230)
T ss_dssp HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCT-TTEEEEECSGGGG------
T ss_pred HHHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECchhhc------
Confidence 35667778889999999999999999999875 568999999999999999999999986 4677776654221
Q ss_pred cccccccccccccccCCCCCCceeEEEe-ccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhcc
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIA-NILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILL 205 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 205 (225)
+.+...||+|++ +..-+-+.++++.....|+++|.++++.+. ....+++.+.+. |..++.
T Consensus 85 ----------------~~~~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~~--~~~~lr~~L~~~Gf~i~~E 146 (230)
T 3lec_A 85 ----------------FEEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPNN--REDDLRKWLAANDFEIVAE 146 (230)
T ss_dssp ----------------CCGGGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESS--CHHHHHHHHHHTTEEEEEE
T ss_pred ----------------cccccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECCC--ChHHHHHHHHHCCCEEEEE
Confidence 112337998765 444456788999999999999999998653 477777777765 543332
Q ss_pred c---ccCCceEEEe
Q 041459 206 S---EMDDWTCVSG 216 (225)
Q Consensus 206 ~---~~~~w~~~~~ 216 (225)
. +.+.|..+..
T Consensus 147 ~lv~e~~~~Yeii~ 160 (230)
T 3lec_A 147 DILTENDKRYEILV 160 (230)
T ss_dssp EEEEC--CEEEEEE
T ss_pred EEEEECCEEEEEEE
Confidence 2 3444544433
No 47
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.59 E-value=4.7e-14 Score=114.05 Aligned_cols=110 Identities=23% Similarity=0.218 Sum_probs=85.0
Q ss_pred HHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccc
Q 041459 49 LLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNER 128 (225)
Q Consensus 49 ~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
...+.....++.+|||+|||+|.++..+++.+. +++++|+++.+++.|+++...++ ..+.+...+...++.
T Consensus 29 ~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~----- 99 (227)
T 1ve3_A 29 EPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE---SNVEFIVGDARKLSF----- 99 (227)
T ss_dssp HHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCTTSCCS-----
T ss_pred HHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC---CCceEEECchhcCCC-----
Confidence 344444455688999999999999999888765 89999999999999999987665 235666665543311
Q ss_pred ccccccccccccccCCCCCCceeEEEeccc--hh---HHHHHHHHHHHhccCCeEEEEecc
Q 041459 129 VDGIVEDLSSHEIRGISETEKYDVVIANIL--LN---PLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~--~~---~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+.++||+|+++.+ +. ....++..+.+.|||||.+++...
T Consensus 100 -----------------~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 100 -----------------EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp -----------------CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----------------CCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 4568999999887 43 346789999999999999988644
No 48
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.59 E-value=2.7e-14 Score=115.33 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=89.6
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+++. ++.+...+...++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~------------- 104 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP--NIKLLWVDGSDLT------------- 104 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS--SEEEEECCSSCGG-------------
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCC--CEEEEeCCHHHHH-------------
Confidence 35789999999999999998875 5678999999999999999999888764 3666665554321
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
...+.+.||+|+++++..+ ...++..+.++|||||.+++.+........+.+.+.+
T Consensus 105 -------~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 171 (214)
T 1yzh_A 105 -------DYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQ 171 (214)
T ss_dssp -------GTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred -------hhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Confidence 0014568999999977531 2578999999999999999975443334444444443
No 49
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.58 E-value=2.8e-14 Score=114.20 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=89.3
Q ss_pred HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccc
Q 041459 46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASM 125 (225)
Q Consensus 46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (225)
..+...+...+.++.+|||+|||+|.++..+++.+..+++++|+++.+++.|+++... . ..+.+...+...++.
T Consensus 30 ~~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~--~~i~~~~~d~~~~~~-- 103 (215)
T 2pxx_A 30 SSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--V--PQLRWETMDVRKLDF-- 103 (215)
T ss_dssp HHHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--C--TTCEEEECCTTSCCS--
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--C--CCcEEEEcchhcCCC--
Confidence 3455666666678899999999999999999888766899999999999999988753 1 235566655543321
Q ss_pred cccccccccccccccccCCCCCCceeEEEeccchhH------------------HHHHHHHHHHhccCCeEEEEeccCC
Q 041459 126 NERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP------------------LLQLADHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~------------------~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (225)
+.++||+|+++.+++. ...+++.+.++|||||.+++.++..
T Consensus 104 --------------------~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 104 --------------------PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp --------------------CSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred --------------------CCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 4578999999877643 3568999999999999999976654
No 50
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.57 E-value=7.1e-15 Score=119.90 Aligned_cols=121 Identities=12% Similarity=0.129 Sum_probs=89.1
Q ss_pred cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|.++..+++ .+..+++|+|+++.+++.|++++..+++.+ +.+...+... .+..
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~n--v~~~~~Da~~-------~l~~---- 99 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSN--LRVMCHDAVE-------VLHK---- 99 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSS--EEEECSCHHH-------HHHH----
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCc--EEEEECCHHH-------HHHH----
Confidence 3678999999999999999886 456789999999999999999998888764 5555443321 1110
Q ss_pred cccccccCCCCCCceeEEEeccchh-----HH------HHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 136 LSSHEIRGISETEKYDVVIANILLN-----PL------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~-----~~------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
..++++||.|+++.+.. +. ..+++.+.+.|||||.+++.+........+.+.+..
T Consensus 100 --------~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~ 165 (218)
T 3dxy_A 100 --------MIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS 165 (218)
T ss_dssp --------HSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred --------HcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 01567899999984422 11 258999999999999999987665555556655554
No 51
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.57 E-value=1.7e-14 Score=115.99 Aligned_cols=109 Identities=10% Similarity=-0.001 Sum_probs=78.9
Q ss_pred HHHHhh-ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC----------CCCCcceEEEecC
Q 041459 50 LLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN----------IGPKKMKLHLVPD 118 (225)
Q Consensus 50 ~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~----------~~~~~~~~~~~~~ 118 (225)
.++... +.++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|+++..... .....+.+...+.
T Consensus 13 ~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 91 (203)
T 1pjz_A 13 QYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF 91 (203)
T ss_dssp HHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred HHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc
Confidence 344333 34688999999999999999998865 79999999999999988754210 0013466666666
Q ss_pred CCCCccccccccccccccccccccCCCCC-CceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEE
Q 041459 119 RTFPASMNERVDGIVEDLSSHEIRGISET-EKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~ 181 (225)
..++. .. ++||+|+++..+++ ...+++++.++|||||.+++
T Consensus 92 ~~l~~----------------------~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l 138 (203)
T 1pjz_A 92 FALTA----------------------RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL 138 (203)
T ss_dssp SSSTH----------------------HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred ccCCc----------------------ccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 54421 22 67999998766543 34578999999999998444
No 52
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.57 E-value=4.4e-15 Score=114.94 Aligned_cols=110 Identities=21% Similarity=0.296 Sum_probs=80.1
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||+|.++..+++.+.. ++|+|+++.+++.|++++..+++ ++.+...+.... .... .
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~-------~~~~-~--- 105 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTGL---GARVVALPVEVF-------LPEA-K--- 105 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHTC---CCEEECSCHHHH-------HHHH-H---
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcCC---ceEEEeccHHHH-------HHhh-h---
Confidence 6889999999999999999887655 99999999999999999987775 244444332110 0000 0
Q ss_pred cccccCCCCCCceeEEEeccchh-HHHHHHHHHH--HhccCCeEEEEeccCCCcH
Q 041459 138 SHEIRGISETEKYDVVIANILLN-PLLQLADHIV--SYAKPGAVVGISGILSEQL 189 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~-~~~~~l~~~~--~~LkpgG~l~~~~~~~~~~ 189 (225)
...++||+|+++++++ .....++.+. ++|||||.+++++......
T Consensus 106 -------~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~~ 153 (171)
T 1ws6_A 106 -------AQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLYL 153 (171)
T ss_dssp -------HTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTSCC
T ss_pred -------ccCCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCccCC
Confidence 0134799999998873 3445566666 9999999999976655443
No 53
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.57 E-value=3.6e-14 Score=117.06 Aligned_cols=104 Identities=19% Similarity=0.226 Sum_probs=84.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++....+++|+|+++.+++.|++++...++. .++.+...+...++
T Consensus 34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~------------- 99 (256)
T 1nkv_A 34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS-ERVHFIHNDAAGYV------------- 99 (256)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCCTTCC-------------
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEECChHhCC-------------
Confidence 4578899999999999999988754557999999999999999999887765 34666666654431
Q ss_pred cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEec
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
.+++||+|++...+++ ...++.++.++|||||.+++.+
T Consensus 100 ----------~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 100 ----------ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp ----------CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred ----------cCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence 2567999999877655 4678999999999999999864
No 54
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=99.57 E-value=1.9e-14 Score=124.61 Aligned_cols=144 Identities=19% Similarity=0.235 Sum_probs=103.8
Q ss_pred CCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 22 PDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 22 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
..+.++.+.+++...|......+.+. .+.....++.+|||+|||+|.+++. ++ +..+++|+|+++.+++.|++|+
T Consensus 162 ~~e~g~~f~~d~~~~~~~~~~~~er~---~i~~~~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~ 236 (336)
T 2yx1_A 162 HKENGYRLWVDIAKVYFSPRLGGERA---RIMKKVSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNI 236 (336)
T ss_dssp EEETTEEEEEETTTSCCCGGGHHHHH---HHHHHCCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHH
T ss_pred EEECCEEEEEehHHhccCCccHHHHH---HHHHhcCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHH
Confidence 33467778888875443322222222 3334455789999999999999999 87 6788999999999999999999
Q ss_pred HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459 102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
..+++. .++.+...+...+ . .+||+|++++|... ..++..+.++|+|||.+++
T Consensus 237 ~~n~l~-~~v~~~~~D~~~~------------------------~-~~fD~Vi~dpP~~~-~~~l~~~~~~L~~gG~l~~ 289 (336)
T 2yx1_A 237 KLNKLE-HKIIPILSDVREV------------------------D-VKGNRVIMNLPKFA-HKFIDKALDIVEEGGVIHY 289 (336)
T ss_dssp HHTTCT-TTEEEEESCGGGC------------------------C-CCEEEEEECCTTTG-GGGHHHHHHHEEEEEEEEE
T ss_pred HHcCCC-CcEEEEECChHHh------------------------c-CCCcEEEECCcHhH-HHHHHHHHHHcCCCCEEEE
Confidence 999875 2456665544322 2 67999999987543 3778889999999999988
Q ss_pred eccCCCcHHHHHHHHHh
Q 041459 182 SGILSEQLPHIINRYSE 198 (225)
Q Consensus 182 ~~~~~~~~~~~~~~~~~ 198 (225)
.++... .....+.+.+
T Consensus 290 ~~~~~~-~~~~~~~l~~ 305 (336)
T 2yx1_A 290 YTIGKD-FDKAIKLFEK 305 (336)
T ss_dssp EEEESS-SHHHHHHHHH
T ss_pred EEeecC-chHHHHHHHH
Confidence 766554 4444444443
No 55
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.57 E-value=5.2e-14 Score=116.57 Aligned_cols=129 Identities=11% Similarity=0.056 Sum_probs=100.2
Q ss_pred HHHHHhhccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459 49 LLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 49 ~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
++.+...++++.+|+|+|||+|.+++.+++.+ ..+++|+|+++.+++.|++|+..+++. +++.+...++...
T Consensus 12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~-~~I~v~~gD~l~~------ 84 (244)
T 3gnl_A 12 LEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT-EQIDVRKGNGLAV------ 84 (244)
T ss_dssp HHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT-TTEEEEECSGGGG------
T ss_pred HHHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEecchhhc------
Confidence 35666778889999999999999999999875 568999999999999999999999986 4567766554221
Q ss_pred cccccccccccccccCCCCCCceeEEEec-cchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhh
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIAN-ILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LED 202 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~-~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~ 202 (225)
+.+..+||+|++. ..-.-+..+++.....|++++.++++.. .....+++.+.+. |..
T Consensus 85 ----------------~~~~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~--~~~~~lr~~L~~~Gf~i 143 (244)
T 3gnl_A 85 ----------------IEKKDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPN--IAAWQLREWSEQNNWLI 143 (244)
T ss_dssp ----------------CCGGGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES--SCHHHHHHHHHHHTEEE
T ss_pred ----------------cCccccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcC--CChHHHHHHHHHCCCEE
Confidence 1123359987754 4445678899999999999999999865 3577777777765 543
No 56
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.57 E-value=6.2e-14 Score=112.59 Aligned_cols=135 Identities=20% Similarity=0.203 Sum_probs=95.8
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+.++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++. ++ .+...+...+
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~---~~-----~~~~~d~~~~-------------- 97 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAAG-FDVDATDGSPELAAEASRRL---GR-----PVRTMLFHQL-------------- 97 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH---TS-----CCEECCGGGC--------------
T ss_pred cCCCCcEEEECCCCCHHHHHHHHcC-CeEEEECCCHHHHHHHHHhc---CC-----ceEEeeeccC--------------
Confidence 4468899999999999999988875 47999999999999999886 22 2333332222
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCC--------------CcHHHHHHHH
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILS--------------EQLPHIINRY 196 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~--------------~~~~~~~~~~ 196 (225)
...++||+|+++..+++ ...++..+.+.|||||.++++.... ....++.+.+
T Consensus 98 ---------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (211)
T 3e23_A 98 ---------DAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARY 168 (211)
T ss_dssp ---------CCCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHH
T ss_pred ---------CCCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHH
Confidence 14678999999887754 4578999999999999999864432 2456666666
Q ss_pred Hh-h-hhhhccccc---------CCceEEEeeeeccc
Q 041459 197 SE-F-LEDILLSEM---------DDWTCVSGTKKRAK 222 (225)
Q Consensus 197 ~~-~-~~~~~~~~~---------~~w~~~~~~k~~~~ 222 (225)
++ . |..+..... ..|..+...++..-
T Consensus 169 ~~aG~f~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~ 205 (211)
T 3e23_A 169 AEAGTWASVAVESSEGKGFDQELAQFLHVSVRKPELE 205 (211)
T ss_dssp HHHCCCSEEEEEEEEEECTTSCEEEEEEEEEECCCC-
T ss_pred HhCCCcEEEEEEeccCCCCCCCCceEEEEEEecCccc
Confidence 64 3 544433211 23777777776543
No 57
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.56 E-value=2.6e-14 Score=117.65 Aligned_cols=142 Identities=17% Similarity=0.098 Sum_probs=96.4
Q ss_pred cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|.+++.++. .+..+++|+|+++.+++.|++++..+++.+ +.+...+...++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~------------ 134 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN--TTFCHDRAETFGQ------------ 134 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS--EEEEESCHHHHTT------------
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--EEEEeccHHHhcc------------
Confidence 3678999999999999998886 456789999999999999999998888753 6666554322210
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC--CCcHHHHHHHHHhh-hhhhccc------
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL--SEQLPHIINRYSEF-LEDILLS------ 206 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~-~~~~~~~------ 206 (225)
.....++||+|+++. ...+..+++.+.++|||||.+++..-. .++...+.+.++.. +......
T Consensus 135 -------~~~~~~~fD~V~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 206 (240)
T 1xdz_A 135 -------RKDVRESYDIVTARA-VARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPI 206 (240)
T ss_dssp -------CTTTTTCEEEEEEEC-CSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTT
T ss_pred -------cccccCCccEEEEec-cCCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCC
Confidence 000146899999977 456788999999999999999885321 22333444444443 3222221
Q ss_pred ccCCceEEEeeeec
Q 041459 207 EMDDWTCVSGTKKR 220 (225)
Q Consensus 207 ~~~~w~~~~~~k~~ 220 (225)
..+.|..+.++|++
T Consensus 207 ~~~~~~l~~~~k~~ 220 (240)
T 1xdz_A 207 EESDRNIMVIRKIK 220 (240)
T ss_dssp TCCEEEEEEEEECS
T ss_pred CCCceEEEEEEecC
Confidence 12446666666554
No 58
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.56 E-value=5.8e-14 Score=116.99 Aligned_cols=107 Identities=19% Similarity=0.322 Sum_probs=87.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++....+++|+|+++.+++.|+++....++. +++.+...+...++.
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~------------ 125 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA-NRVTFSYADAMDLPF------------ 125 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCCS------------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEECccccCCC------------
Confidence 3468899999999999999988754578999999999999999998877765 356676666544421
Q ss_pred cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
++++||+|+++.++++ ...++.++.++|||||.++++++.
T Consensus 126 ----------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 126 ----------EDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp ----------CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred ----------CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEee
Confidence 4678999999887764 567899999999999999987653
No 59
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.56 E-value=2.4e-14 Score=117.50 Aligned_cols=125 Identities=16% Similarity=0.160 Sum_probs=92.0
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||+|.++..+++.+..+++++|+++.+++.|+++....+. ..+.+...+...++.
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~-------------- 142 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK--RVRNYFCCGLQDFTP-------------- 142 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG--GEEEEEECCGGGCCC--------------
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC--ceEEEEEcChhhcCC--------------
Confidence 4789999999999999998877667899999999999999998876531 234455444322211
Q ss_pred cccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCC--------------cHHHHHHHHHh
Q 041459 138 SHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSE--------------QLPHIINRYSE 198 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~~~~~~~~~~~ 198 (225)
..++||+|+++..+++ +..++..+.++|||||.+++.+.... ...++.+.+.+
T Consensus 143 --------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (241)
T 2ex4_A 143 --------EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICS 214 (241)
T ss_dssp --------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHH
T ss_pred --------CCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHH
Confidence 3458999999877654 44789999999999999999654221 45667777765
Q ss_pred h-hhhhccc
Q 041459 199 F-LEDILLS 206 (225)
Q Consensus 199 ~-~~~~~~~ 206 (225)
. |..+...
T Consensus 215 aGf~~~~~~ 223 (241)
T 2ex4_A 215 AGLSLLAEE 223 (241)
T ss_dssp TTCCEEEEE
T ss_pred cCCeEEEee
Confidence 5 6555443
No 60
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.56 E-value=8.4e-14 Score=112.41 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=81.9
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCC---CcceEEEecCCCCCcccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGP---KKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
.++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+++.. .++.+...+....+.
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------- 98 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK--------- 98 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG---------
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc---------
Confidence 36789999999999999998886 44789999999999999999987666541 145666655433211
Q ss_pred ccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEec
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
..++||+|+++..+++ ...+++.+.++|||||+++++.
T Consensus 99 -------------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 99 -------------RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp -------------GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred -------------cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 3468999999887763 4678999999999999877753
No 61
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.56 E-value=1.6e-14 Score=120.81 Aligned_cols=109 Identities=21% Similarity=0.218 Sum_probs=85.8
Q ss_pred HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccc
Q 041459 46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASM 125 (225)
Q Consensus 46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (225)
..+.++|......+.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++ .++.+...+.+.++.
T Consensus 27 ~~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~-~~v~gvD~s~~ml~~a~~~--------~~v~~~~~~~e~~~~-- 95 (257)
T 4hg2_A 27 RALFRWLGEVAPARGDALDCGCGSGQASLGLAEFF-ERVHAVDPGEAQIRQALRH--------PRVTYAVAPAEDTGL-- 95 (257)
T ss_dssp HHHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTC-SEEEEEESCHHHHHTCCCC--------TTEEEEECCTTCCCC--
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhC-CEEEEEeCcHHhhhhhhhc--------CCceeehhhhhhhcc--
Confidence 44556666665567899999999999999998876 5799999999999877531 236677777665533
Q ss_pred cccccccccccccccccCCCCCCceeEEEeccchhH--HHHHHHHHHHhccCCeEEEEeccC
Q 041459 126 NERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
++++||+|++...+++ ....+.++.++|||||++++.+..
T Consensus 96 --------------------~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 96 --------------------PPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp --------------------CSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred --------------------cCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEECC
Confidence 6789999999877765 567899999999999999886554
No 62
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.55 E-value=6.1e-14 Score=109.35 Aligned_cols=129 Identities=16% Similarity=0.148 Sum_probs=96.3
Q ss_pred CchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCC
Q 041459 42 HATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR 119 (225)
Q Consensus 42 ~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 119 (225)
.+....+...+... ..++.+|||+|||+|.++..+++ +..+++|+|+++.+++.|++++..+++. .+.+...+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~d~~ 93 (183)
T 2yxd_A 17 PITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIK--NCQIIKGRAE 93 (183)
T ss_dssp CCCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCC--SEEEEESCHH
T ss_pred CcCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEECCcc
Confidence 34444444444333 34678999999999999999888 6778999999999999999999888764 3555444321
Q ss_pred CCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 120 TFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
. .+ +.+.||+|+++.+ .....++..+.+. |||.+++.........++.+.+++.
T Consensus 94 ~----------~~-------------~~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~ 147 (183)
T 2yxd_A 94 D----------VL-------------DKLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESR 147 (183)
T ss_dssp H----------HG-------------GGCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHT
T ss_pred c----------cc-------------cCCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHc
Confidence 1 01 3468999999988 7778888888888 9999999877666666777666654
No 63
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.55 E-value=1.1e-13 Score=117.86 Aligned_cols=142 Identities=16% Similarity=0.160 Sum_probs=99.9
Q ss_pred CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCcceEEEecCCCCCccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNN---IGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
.+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++...+ +...++.+...|+..+-.
T Consensus 83 ~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~---------- 152 (294)
T 3adn_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVN---------- 152 (294)
T ss_dssp TCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC-------------
T ss_pred CCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHh----------
Confidence 5789999999999999998886 57889999999999999999987542 233456777766543310
Q ss_pred cccccccccCCCCCCceeEEEeccchhH-----H--HHHHHHHHHhccCCeEEEEecc----CCCcHHHHHHHHHhhhhh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP-----L--LQLADHIVSYAKPGAVVGISGI----LSEQLPHIINRYSEFLED 202 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~--~~~l~~~~~~LkpgG~l~~~~~----~~~~~~~~~~~~~~~~~~ 202 (225)
...++||+|+++.+... + .++++.+.+.|||||++++... ..+....+.+.+++.|..
T Consensus 153 -----------~~~~~fDvIi~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~s~~~~~~~~~~~~~~l~~~F~~ 221 (294)
T 3adn_A 153 -----------QTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSD 221 (294)
T ss_dssp -----------CCCCCEEEEEECC----------CCHHHHHHHHHTEEEEEEEEEEEEECSSCCHHHHHHHHHHHHHCSE
T ss_pred -----------hcCCCccEEEECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEecCCcccchHHHHHHHHHHHHHCCC
Confidence 03568999999765421 1 5688999999999999998532 223455666666666654
Q ss_pred hcc-------cccCCceEEEeeeec
Q 041459 203 ILL-------SEMDDWTCVSGTKKR 220 (225)
Q Consensus 203 ~~~-------~~~~~w~~~~~~k~~ 220 (225)
+.. ...|.|.-+...|+.
T Consensus 222 v~~~~~~vp~~p~g~~~f~~as~~~ 246 (294)
T 3adn_A 222 VGFYQAAIPTYYGGIMTFAWATDND 246 (294)
T ss_dssp EEEEEEECTTSSSSEEEEEEEESCT
T ss_pred eEEEEEEecccCCCceEEEEEeCCc
Confidence 332 225778877777653
No 64
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.55 E-value=4e-14 Score=124.51 Aligned_cols=114 Identities=19% Similarity=0.201 Sum_probs=85.4
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhc-----C-CCCCcceEEEecCCCCCccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALN-----N-IGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
..++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+ + ....++.+...+...+..
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~---- 156 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLAT---- 156 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGG----
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhh----
Confidence 346889999999999999998874 4568999999999999999988754 3 322346666665543300
Q ss_pred cccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
.. ..-.++++||+|+++.++++ ...++.++.++|||||.++++++.
T Consensus 157 -~~-----------~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 205 (383)
T 4fsd_A 157 -AE-----------PEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVY 205 (383)
T ss_dssp -CB-----------SCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -cc-----------cCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEec
Confidence 00 00015678999999988765 578899999999999999997543
No 65
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.55 E-value=1.5e-13 Score=114.04 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=81.9
Q ss_pred HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccc
Q 041459 46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASM 125 (225)
Q Consensus 46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (225)
..+...+.....++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++.. .+.+...+...++
T Consensus 38 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~d~~~~~--- 106 (263)
T 3pfg_A 38 ADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF-GTVEGLELSADMLAIARRRNP-------DAVLHHGDMRDFS--- 106 (263)
T ss_dssp HHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS-SEEEEEESCHHHHHHHHHHCT-------TSEEEECCTTTCC---
T ss_pred HHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC-------CCEEEECChHHCC---
Confidence 34444555455567899999999999999998875 479999999999999998753 2456666554431
Q ss_pred cccccccccccccccccCCCCCCceeEEEecc-chhH------HHHHHHHHHHhccCCeEEEEe
Q 041459 126 NERVDGIVEDLSSHEIRGISETEKYDVVIANI-LLNP------LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~-~~~~------~~~~l~~~~~~LkpgG~l~~~ 182 (225)
..++||+|+++. ++++ ...+++++.++|||||.+++.
T Consensus 107 --------------------~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 107 --------------------LGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp --------------------CSCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred --------------------ccCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 357899999986 6544 346799999999999999995
No 66
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.55 E-value=1.1e-13 Score=111.71 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=85.9
Q ss_pred hHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCC---CcceEEEec
Q 041459 44 TTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGP---KKMKLHLVP 117 (225)
Q Consensus 44 ~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~---~~~~~~~~~ 117 (225)
......+.+... ..++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.|++++..+++.. ..+.+...+
T Consensus 13 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 92 (219)
T 3jwg_A 13 LNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSS 92 (219)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECC
T ss_pred chHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCc
Confidence 334444444333 2367899999999999999988864 4789999999999999999987666541 145666655
Q ss_pred CCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEe
Q 041459 118 DRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~ 182 (225)
....+. ..++||+|+++..+++ ...+++.+.+.|||||+++..
T Consensus 93 ~~~~~~----------------------~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 93 LVYRDK----------------------RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp SSSCCG----------------------GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred cccccc----------------------ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 433211 3568999999877654 357899999999999977764
No 67
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.55 E-value=2.3e-14 Score=121.73 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=83.8
Q ss_pred ccCCCcEEEEcccccHHH-HHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILG-IAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~-~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
++++.+|||+|||+|.++ +.+++....+|+|+|+++.+++.|++++...++ +++.+..+++..+
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl--~~v~~v~gDa~~l------------- 184 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV--DGVNVITGDETVI------------- 184 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC--CSEEEEESCGGGG-------------
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC--CCeEEEECchhhC-------------
Confidence 568999999999998765 556666667899999999999999999988887 3566766655333
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+++.||+|++.........+++++.+.|||||++++..
T Consensus 185 -----------~d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 185 -----------DGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp -----------GGCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred -----------CCCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEc
Confidence 45789999987766677889999999999999999864
No 68
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.55 E-value=7e-14 Score=115.33 Aligned_cols=98 Identities=19% Similarity=0.290 Sum_probs=80.2
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|+++.. ...+.+...+...++.
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~~~-------------- 104 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT-----SPVVCYEQKAIEDIAI-------------- 104 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC-----CTTEEEEECCGGGCCC--------------
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc-----cCCeEEEEcchhhCCC--------------
Confidence 678999999999999999998877689999999999999998765 1335566555433321
Q ss_pred cccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEe
Q 041459 138 SHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~ 182 (225)
+.++||+|+++..+++ ...+++.+.++|||||.++++
T Consensus 105 --------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 105 --------EPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp --------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------CCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence 4678999999888765 578899999999999999986
No 69
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.55 E-value=1.6e-13 Score=110.65 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=77.8
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++.. ..+.+...+...++.
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~d~~~~~~-------------- 103 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLP------KEFSITEGDFLSFEV-------------- 103 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHHHHHHHHHHSC------TTCCEESCCSSSCCC--------------
T ss_pred CCCeEEEeCCCCCHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhCC------CceEEEeCChhhcCC--------------
Confidence 68899999999999999988874 579999999999999998764 124455555444321
Q ss_pred cccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEEEeccC
Q 041459 138 SHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
+ ++||+|+++..+++. ..++.++.+.|||||.+++.+..
T Consensus 104 --------~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 104 --------P-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp --------C-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred --------C-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 3 789999998887652 23899999999999999997543
No 70
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.54 E-value=8.2e-14 Score=117.65 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=85.5
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++....+++|+|+++.+++.|+++....++. ..+.+...+...++.
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~------------- 146 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA-DNITVKYGSFLEIPC------------- 146 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT-TTEEEEECCTTSCSS-------------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEEcCcccCCC-------------
Confidence 467899999999999999988752347999999999999999998877765 356676666554422
Q ss_pred ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
++++||+|+++..+++ ...++.++.++|||||.+++.+.
T Consensus 147 ---------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 147 ---------EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp ---------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------CCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 4678999999877755 57889999999999999998754
No 71
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.54 E-value=6.6e-14 Score=117.67 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=85.8
Q ss_pred HHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccc
Q 041459 51 LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVD 130 (225)
Q Consensus 51 ~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
++.....++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++++...++. ..+.+...+...++
T Consensus 61 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-------- 130 (285)
T 4htf_A 61 VLAEMGPQKLRVLDAGGGEGQTAIKMAERG-HQVILCDLSAQMIDRAKQAAEAKGVS-DNMQFIHCAAQDVA-------- 130 (285)
T ss_dssp HHHHTCSSCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC-CCG-GGEEEEESCGGGTG--------
T ss_pred HHHhcCCCCCEEEEeCCcchHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCC-cceEEEEcCHHHhh--------
Confidence 344444457899999999999999998884 47999999999999999998877764 34566665543331
Q ss_pred ccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459 131 GIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.. ..++||+|+++.++++ ...++..+.++|||||.+++...
T Consensus 131 ~~-------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 131 SH-------------LETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp GG-------------CSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hh-------------cCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 00 4678999999888764 56789999999999999998654
No 72
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.54 E-value=1.1e-13 Score=109.47 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=79.8
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||+|.++..+++.+ .+++++|+++.+++.|+++...+++.+ +.+...+....+
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~--~~~~~~d~~~~~--------------- 93 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENLDN--LHTRVVDLNNLT--------------- 93 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCTT--EEEEECCGGGCC---------------
T ss_pred CCCeEEEEcCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhCCCCC--cEEEEcchhhCC---------------
Confidence 57899999999999999988875 479999999999999999988777642 555554433221
Q ss_pred cccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEec
Q 041459 138 SHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
..++||+|+++.++++ ...+++.+.+.|||||.+++.+
T Consensus 94 --------~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 94 --------FDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp --------CCCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred --------CCCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 2567999999877653 5678999999999999987643
No 73
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.54 E-value=1.5e-13 Score=109.62 Aligned_cols=124 Identities=14% Similarity=0.116 Sum_probs=91.2
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
.+.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++.. .+.+...+...++.
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~-------~~~~~~~d~~~~~~-------------- 98 (203)
T 3h2b_A 41 VDGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHP-------SVTFHHGTITDLSD-------------- 98 (203)
T ss_dssp CCSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCT-------TSEEECCCGGGGGG--------------
T ss_pred CCCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhCC-------CCeEEeCccccccc--------------
Confidence 488999999999999999988755 79999999999999987732 24455444332211
Q ss_pred cccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCC---------------cHHHHHHHHH
Q 041459 138 SHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSE---------------QLPHIINRYS 197 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~~~~~~ 197 (225)
+.++||+|+++..+++ ...+++.+.++|||||.++++..... ...++.+.+.
T Consensus 99 --------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 170 (203)
T 3h2b_A 99 --------SPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALE 170 (203)
T ss_dssp --------SCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHH
T ss_pred --------CCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHH
Confidence 4678999999876644 56789999999999999998764432 3567777777
Q ss_pred hh-hhhhcccccCCc
Q 041459 198 EF-LEDILLSEMDDW 211 (225)
Q Consensus 198 ~~-~~~~~~~~~~~w 211 (225)
+. |+.+........
T Consensus 171 ~~Gf~~~~~~~~~~~ 185 (203)
T 3h2b_A 171 TAGFQVTSSHWDPRF 185 (203)
T ss_dssp HTTEEEEEEEECTTS
T ss_pred HCCCcEEEEEecCCC
Confidence 65 665554433333
No 74
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.54 E-value=2.9e-13 Score=106.33 Aligned_cols=122 Identities=18% Similarity=0.166 Sum_probs=89.4
Q ss_pred HHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccc
Q 041459 51 LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVD 130 (225)
Q Consensus 51 ~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
++...+.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++.. .+.+...+....+.
T Consensus 39 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~-------~~~~~~~d~~~~~~------- 103 (195)
T 3cgg_A 39 LIDAMAPRGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFP-------EARWVVGDLSVDQI------- 103 (195)
T ss_dssp HHHHHSCTTCEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCT-------TSEEEECCTTTSCC-------
T ss_pred HHHHhccCCCeEEEECCCCCHHHHHHHHCC-CcEEEEcCCHHHHHHHHHhCC-------CCcEEEcccccCCC-------
Confidence 444446678999999999999999988875 579999999999999988752 14455555433311
Q ss_pred ccccccccccccCCCCCCceeEEEec-cchhH-----HHHHHHHHHHhccCCeEEEEeccCC--CcHHHHHHHHHhh-hh
Q 041459 131 GIVEDLSSHEIRGISETEKYDVVIAN-ILLNP-----LLQLADHIVSYAKPGAVVGISGILS--EQLPHIINRYSEF-LE 201 (225)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~DvIi~~-~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~-~~ 201 (225)
+.+.||+|+++ ..+++ ...++..+.+.|+|||.+++..... ....++.+.+.+. |.
T Consensus 104 ---------------~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~ 168 (195)
T 3cgg_A 104 ---------------SETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLE 168 (195)
T ss_dssp ---------------CCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEE
T ss_pred ---------------CCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCE
Confidence 45789999998 34433 4678999999999999999864433 3566677666654 54
Q ss_pred h
Q 041459 202 D 202 (225)
Q Consensus 202 ~ 202 (225)
.
T Consensus 169 ~ 169 (195)
T 3cgg_A 169 L 169 (195)
T ss_dssp E
T ss_pred E
Confidence 3
No 75
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.54 E-value=6.2e-14 Score=119.69 Aligned_cols=105 Identities=14% Similarity=0.049 Sum_probs=86.6
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++....+++|+|+++.+++.|++++..+++. .++.+...+...++.
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~------------- 181 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRID-DHVRSRVCNMLDTPF------------- 181 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCCC-------------
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CceEEEECChhcCCC-------------
Confidence 467899999999999999988763467999999999999999999988876 356777766654421
Q ss_pred ccccccCCCCCCceeEEEeccchhH--HHHHHHHHHHhccCCeEEEEecc
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP--LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+.+.||+|+++..+++ ...++..+.++|||||.+++.+.
T Consensus 182 ---------~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 182 ---------DKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp ---------CTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------CCCCEeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 4678999999877655 57789999999999999998654
No 76
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.53 E-value=2.1e-13 Score=111.02 Aligned_cols=106 Identities=21% Similarity=0.236 Sum_probs=83.7
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|+++....+ .+.+...+...++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~d~~~~~------------- 105 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL----KVKYIEADYSKYD------------- 105 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT----TEEEEESCTTTCC-------------
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC----CEEEEeCchhccC-------------
Confidence 46789999999999999998875 46789999999999999998875443 3566666655442
Q ss_pred cccccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEEEeccCCCcH
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILSEQL 189 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~~~~~ 189 (225)
..++||+|+++.++++. ..+++++.+.|||||.+++++......
T Consensus 106 ----------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 154 (234)
T 3dtn_A 106 ----------FEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGET 154 (234)
T ss_dssp ----------CCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSS
T ss_pred ----------CCCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCC
Confidence 23789999998887653 358999999999999999987654433
No 77
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.53 E-value=2.5e-14 Score=117.26 Aligned_cols=106 Identities=13% Similarity=0.122 Sum_probs=78.3
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|+++....+ .++.+...+...+ ...+
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~-------~~~~--- 124 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDV-------APTL--- 124 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHH-------GGGS---
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC---CCeEEEecCHHHh-------hccc---
Confidence 45688999999999999999988766689999999999999999877655 2345544433211 0011
Q ss_pred cccccccCCCCCCceeEEEe-ccch-------hHHHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIA-NILL-------NPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~-~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
++++||+|++ .... .....++.++.++|||||++++.+.
T Consensus 125 ----------~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 125 ----------PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp ----------CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred ----------CCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 4678999999 3321 1234678999999999999998543
No 78
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.53 E-value=8e-14 Score=113.02 Aligned_cols=111 Identities=19% Similarity=0.356 Sum_probs=86.2
Q ss_pred HHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCC---CcceEEEecCCCCCcccccc
Q 041459 52 LQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGP---KKMKLHLVPDRTFPASMNER 128 (225)
Q Consensus 52 L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 128 (225)
+...++++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++....++.. ..+.+...+...++.
T Consensus 24 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----- 97 (235)
T 3sm3_A 24 IHNYLQEDDEILDIGCGSGKISLELASKG-YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF----- 97 (235)
T ss_dssp HHHHCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS-----
T ss_pred HHHhCCCCCeEEEECCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC-----
Confidence 33445578999999999999999988875 479999999999999999987766532 235555555544321
Q ss_pred ccccccccccccccCCCCCCceeEEEeccchhHH------HHHHHHHHHhccCCeEEEEeccC
Q 041459 129 VDGIVEDLSSHEIRGISETEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~------~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
+.++||+|+++..+++. ..+++.+.++|||||.+++.++.
T Consensus 98 -----------------~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (235)
T 3sm3_A 98 -----------------HDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFG 143 (235)
T ss_dssp -----------------CTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred -----------------CCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECC
Confidence 46789999998877542 27899999999999999997654
No 79
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.53 E-value=6.6e-14 Score=115.21 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=93.1
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++.+..+++++|+++.+++.|+++.... ..+.+...+...++.
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~------------- 154 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMETATL------------- 154 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGGCCC-------------
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC----CceEEEEccHHHCCC-------------
Confidence 357899999999999999988766678999999999999999886543 234555544432211
Q ss_pred ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCC---------------CcHHHHHHHH
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILS---------------EQLPHIINRY 196 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~~ 196 (225)
+.++||+|+++..+++ ...++.++.++|||||.+++.+... ....++.+.+
T Consensus 155 ---------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 225 (254)
T 1xtp_A 155 ---------PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLF 225 (254)
T ss_dssp ---------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHH
T ss_pred ---------CCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHH
Confidence 4568999999887755 4678999999999999999976411 1235666666
Q ss_pred Hhh-hhhhcccccCCc
Q 041459 197 SEF-LEDILLSEMDDW 211 (225)
Q Consensus 197 ~~~-~~~~~~~~~~~w 211 (225)
++. |..+.......|
T Consensus 226 ~~aGf~~~~~~~~~~~ 241 (254)
T 1xtp_A 226 NESGVRVVKEAFQEEW 241 (254)
T ss_dssp HHHTCCEEEEEECTTC
T ss_pred HHCCCEEEEeeecCCC
Confidence 654 655554443333
No 80
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.53 E-value=1.7e-13 Score=112.31 Aligned_cols=107 Identities=12% Similarity=0.148 Sum_probs=86.4
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|..+..+++. +..+++++|+++.+++.|++++...++. +++.+...+.... ....
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------~~~~--- 138 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFE-NQVRIIEGNALEQ-------FENV--- 138 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCT-TTEEEEESCGGGC-------HHHH---
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECCHHHH-------HHhh---
Confidence 36889999999999999998874 4678999999999999999999888875 3566666554221 0000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
..++||+|+++.....+..+++.+.++|||||++++..+
T Consensus 139 ----------~~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 139 ----------NDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp ----------TTSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred ----------ccCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 256899999998888888999999999999999998544
No 81
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.53 E-value=1.2e-13 Score=112.89 Aligned_cols=133 Identities=15% Similarity=0.097 Sum_probs=95.1
Q ss_pred HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccc
Q 041459 47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMN 126 (225)
Q Consensus 47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.+..++.....++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++....+.. .++.+...+...++
T Consensus 55 ~l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~---- 128 (235)
T 3lcc_A 55 LIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPE-RFVVGLDISESALAKANETYGSSPKA-EYFSFVKEDVFTWR---- 128 (235)
T ss_dssp HHHHHHHTTCSCCEEEEEETCTTCHHHHHHCBTT-EEEEEECSCHHHHHHHHHHHTTSGGG-GGEEEECCCTTTCC----
T ss_pred HHHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHhhccCCC-cceEEEECchhcCC----
Confidence 3344444333345699999999999999988754 56999999999999999988754432 34566655554431
Q ss_pred ccccccccccccccccCCCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEEeccCC----------CcHHH
Q 041459 127 ERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGILS----------EQLPH 191 (225)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~----------~~~~~ 191 (225)
+..+||+|+++..++ ....+++.+.++|||||.+++.++.. ....+
T Consensus 129 -------------------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 189 (235)
T 3lcc_A 129 -------------------PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVST 189 (235)
T ss_dssp -------------------CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHH
T ss_pred -------------------CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHH
Confidence 355899999987664 45678999999999999999865432 23566
Q ss_pred HHHHHHhh-hhhhc
Q 041459 192 IINRYSEF-LEDIL 204 (225)
Q Consensus 192 ~~~~~~~~-~~~~~ 204 (225)
+.+.+.+. |+.+.
T Consensus 190 ~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 190 FEEVLVPIGFKAVS 203 (235)
T ss_dssp HHHHHGGGTEEEEE
T ss_pred HHHHHHHcCCeEEE
Confidence 77777664 54433
No 82
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=99.53 E-value=8.7e-14 Score=124.41 Aligned_cols=154 Identities=16% Similarity=0.123 Sum_probs=104.4
Q ss_pred cceeEEecccceecCCCCchHHHHHHHHHhh-ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 25 QATNIILNPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
.+..+.++|+..|......+......++... ..++.+|||+|||+|.+++.+++. ..+++|+|+++.+++.|++|+..
T Consensus 252 ~g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~ 330 (433)
T 1uwv_A 252 NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARL 330 (433)
T ss_dssp TTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCEEEEECcccccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHH
Confidence 3567777777655433222333333333332 346789999999999999999987 57899999999999999999998
Q ss_pred cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+++. ++.+...+....-.. ..+ ..++||+|++|+|+....+++..+. .++|+++++++|
T Consensus 331 ~~~~--~v~f~~~d~~~~l~~-----~~~-------------~~~~fD~Vv~dPPr~g~~~~~~~l~-~~~p~~ivyvsc 389 (433)
T 1uwv_A 331 NGLQ--NVTFYHENLEEDVTK-----QPW-------------AKNGFDKVLLDPARAGAAGVMQQII-KLEPIRIVYVSC 389 (433)
T ss_dssp TTCC--SEEEEECCTTSCCSS-----SGG-------------GTTCCSEEEECCCTTCCHHHHHHHH-HHCCSEEEEEES
T ss_pred cCCC--ceEEEECCHHHHhhh-----hhh-------------hcCCCCEEEECCCCccHHHHHHHHH-hcCCCeEEEEEC
Confidence 8875 366666655331000 000 3457999999999876556666555 479999999998
Q ss_pred cCCCcHHHHHHHHHhhh
Q 041459 184 ILSEQLPHIINRYSEFL 200 (225)
Q Consensus 184 ~~~~~~~~~~~~~~~~~ 200 (225)
....-..++.......|
T Consensus 390 ~p~tlard~~~l~~~Gy 406 (433)
T 1uwv_A 390 NPATLARDSEALLKAGY 406 (433)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred ChHHHHhhHHHHHHCCc
Confidence 76655555544433333
No 83
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.53 E-value=7.7e-14 Score=113.08 Aligned_cols=119 Identities=15% Similarity=0.125 Sum_probs=86.3
Q ss_pred CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+++.+ +.+...+...+ ...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~n--v~~~~~d~~~l--------~~~---- 103 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN--VKLLNIDADTL--------TDV---- 103 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS--EEEECCCGGGH--------HHH----
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCC--EEEEeCCHHHH--------Hhh----
Confidence 5789999999999999998874 56789999999999999999998887653 55554433221 000
Q ss_pred ccccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
.+.+.||.|+++.+..+ ...+++.+.+.|||||.+++.+..........+.+.+
T Consensus 104 --------~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~ 168 (213)
T 2fca_A 104 --------FEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSE 168 (213)
T ss_dssp --------CCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHH
T ss_pred --------cCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 14567999998765321 3578999999999999999976444334444444443
No 84
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.52 E-value=1.6e-13 Score=115.36 Aligned_cols=109 Identities=14% Similarity=0.138 Sum_probs=84.9
Q ss_pred HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccc
Q 041459 46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASM 125 (225)
Q Consensus 46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (225)
..++..+... ++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|++++..+++ .+.+...+....+
T Consensus 110 ~~~~~~~~~~--~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~--- 180 (286)
T 3m70_A 110 GDVVDAAKII--SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL---NISTALYDINAAN--- 180 (286)
T ss_dssp HHHHHHHHHS--CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCGGGCC---
T ss_pred HHHHHHhhcc--CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC---ceEEEEecccccc---
Confidence 4444444332 688999999999999999998865 799999999999999999988775 2555555443321
Q ss_pred cccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEec
Q 041459 126 NERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
..++||+|+++.++++ ...+++.+.+.|||||.+++.+
T Consensus 181 --------------------~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 181 --------------------IQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp --------------------CCSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred --------------------ccCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3578999999887754 4578999999999999977743
No 85
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=99.52 E-value=9.3e-14 Score=123.98 Aligned_cols=131 Identities=24% Similarity=0.329 Sum_probs=94.2
Q ss_pred cceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459 25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN 104 (225)
Q Consensus 25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~ 104 (225)
.+..+.++|+..|.... .....+...+.. ..++.+|||+|||+|.+++.+++. ..+++|+|+++.+++.|++|+..+
T Consensus 259 ~g~~f~~~~~~F~q~n~-~~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~n 335 (425)
T 2jjq_A 259 DDVDYLIHPNSFFQTNS-YQAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEIN 335 (425)
T ss_dssp TTEEEEECTTSCCCSBH-HHHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCEEEEEccccccccCH-HHHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHc
Confidence 45677777775544322 233333333333 567889999999999999999887 457999999999999999999988
Q ss_pred CCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHH-HHHHHHHhccCCeEEEEec
Q 041459 105 NIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQ-LADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~-~l~~~~~~LkpgG~l~~~~ 183 (225)
++. +.+...+...+ ...+||+|++++|...... +++.+. .|+|+|+++++|
T Consensus 336 gl~---v~~~~~d~~~~------------------------~~~~fD~Vv~dPPr~g~~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 336 NVD---AEFEVASDREV------------------------SVKGFDTVIVDPPRAGLHPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp TCC---EEEEECCTTTC------------------------CCTTCSEEEECCCTTCSCHHHHHHHH-HHCCSEEEEEES
T ss_pred CCc---EEEEECChHHc------------------------CccCCCEEEEcCCccchHHHHHHHHH-hcCCCcEEEEEC
Confidence 864 56666555433 1227999999999754333 444443 589999999998
Q ss_pred cCC
Q 041459 184 ILS 186 (225)
Q Consensus 184 ~~~ 186 (225)
...
T Consensus 388 ~p~ 390 (425)
T 2jjq_A 388 NPE 390 (425)
T ss_dssp CHH
T ss_pred ChH
Confidence 654
No 86
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=99.52 E-value=8.1e-14 Score=117.49 Aligned_cols=141 Identities=17% Similarity=0.167 Sum_probs=101.2
Q ss_pred CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCcceEEEecCCCCCcccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++... ++...++++...++..+ +.
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~-----------l~ 143 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH-----------IA 143 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH-----------HH
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-----------Hh
Confidence 5789999999999999998886 6789999999999999999987542 34334567776654221 00
Q ss_pred ccccccccCCCCCCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEEeccCC----CcHHHHHHHHHhhhhhh
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGILS----EQLPHIINRYSEFLEDI 203 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~~~~~ 203 (225)
. ..++||+|+++.+... ..++++.+.+.|||||++++..... .....+.+.+++.|..+
T Consensus 144 --------~--~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v 213 (275)
T 1iy9_A 144 --------K--SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPIT 213 (275)
T ss_dssp --------T--CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEE
T ss_pred --------h--CCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCe
Confidence 0 2468999999876421 2578999999999999999964321 22345555666556544
Q ss_pred ccc-------ccCCceEEEeeee
Q 041459 204 LLS-------EMDDWTCVSGTKK 219 (225)
Q Consensus 204 ~~~-------~~~~w~~~~~~k~ 219 (225)
... ..+.|..+.++|+
T Consensus 214 ~~~~~~vp~~~~g~w~~~~ask~ 236 (275)
T 1iy9_A 214 KLYTANIPTYPSGLWTFTIGSKK 236 (275)
T ss_dssp EEEEECCTTSGGGCEEEEEEESS
T ss_pred EEEEEecCcccCcceEEEEeeCC
Confidence 432 2678998888775
No 87
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.52 E-value=4.8e-14 Score=116.56 Aligned_cols=104 Identities=17% Similarity=0.161 Sum_probs=82.3
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++....+++|+|+++.+++.|+++.... ..+.+...+....+.
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~------------ 116 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN----NKIIFEANDILTKEF------------ 116 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC----TTEEEEECCTTTCCC------------
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC----CCeEEEECccccCCC------------
Confidence 4467899999999999999988753467999999999999999876543 245666666544321
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
+.++||+|+++..+++ ...++.++.++|||||.+++.++.
T Consensus 117 ----------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (266)
T 3ujc_A 117 ----------PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYC 161 (266)
T ss_dssp ----------CTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ----------CCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 4678999999877655 456899999999999999997653
No 88
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.52 E-value=1.9e-13 Score=114.83 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=82.9
Q ss_pred ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
..++.+|||+|||+|.++..+++ .+. +++|+|+++.+++.|++++...++. ..+.+...+...+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~------------- 126 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENL-RSKRVLLAGWEQF------------- 126 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCC-SCEEEEESCGGGC-------------
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCC-CCeEEEECChhhC-------------
Confidence 45678999999999999999884 554 8999999999999999998877654 3455555443222
Q ss_pred ccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCC
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (225)
+ ++||+|++..++++ ...+++++.++|||||.+++.++..
T Consensus 127 -----------~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 127 -----------D-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp -----------C-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred -----------C-CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 3 78999999877755 4678999999999999999976643
No 89
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.52 E-value=6.2e-14 Score=121.94 Aligned_cols=105 Identities=19% Similarity=0.225 Sum_probs=84.5
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
..++.+|||+|||+|.+++.++.. +..+++|+|+++.+++.|++|+..+++. .+.+...+...++.
T Consensus 201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~--~i~~~~~D~~~~~~---------- 268 (354)
T 3tma_A 201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS--WIRFLRADARHLPR---------- 268 (354)
T ss_dssp CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT--TCEEEECCGGGGGG----------
T ss_pred CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC--ceEEEeCChhhCcc----------
Confidence 346789999999999999998874 4578999999999999999999988875 46676665543321
Q ss_pred cccccccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+...||+|++|+|+.. +..+++.+.+.|||||.+++.+.
T Consensus 269 ------------~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 269 ------------FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp ------------TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred ------------ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3456899999999732 36688999999999999998644
No 90
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.52 E-value=1e-13 Score=107.48 Aligned_cols=131 Identities=14% Similarity=0.112 Sum_probs=95.4
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++ . .++.+...+ .+.
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~--~~v~~~~~d---~~~------------ 71 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----F--DSVITLSDP---KEI------------ 71 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----C--TTSEEESSG---GGS------------
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----C--CCcEEEeCC---CCC------------
Confidence 34678999999999999999988764 899999999999999887 1 234455443 211
Q ss_pred cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCC------------cHHHHHHHHHhhh
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSE------------QLPHIINRYSEFL 200 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~------------~~~~~~~~~~~~~ 200 (225)
+.++||+|+++..+++ ...+++++.+.|||||.+++.++... ...++.+.+. .|
T Consensus 72 ----------~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Gf 140 (170)
T 3i9f_A 72 ----------PDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-NF 140 (170)
T ss_dssp ----------CTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-TE
T ss_pred ----------CCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-Cc
Confidence 5678999999887764 57789999999999999999755322 2456666666 66
Q ss_pred hhhcccccCCc-eEEEeeeec
Q 041459 201 EDILLSEMDDW-TCVSGTKKR 220 (225)
Q Consensus 201 ~~~~~~~~~~w-~~~~~~k~~ 220 (225)
+.+.....+.+ ..+.++++.
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~ 161 (170)
T 3i9f_A 141 VVEKRFNPTPYHFGLVLKRKT 161 (170)
T ss_dssp EEEEEECSSTTEEEEEEEECC
T ss_pred EEEEccCCCCceEEEEEecCC
Confidence 66655555543 345555543
No 91
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.52 E-value=1.5e-13 Score=113.83 Aligned_cols=109 Identities=15% Similarity=0.238 Sum_probs=87.1
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++. +++.+...+....
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~------------- 127 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD-QRVTLREGPALQS------------- 127 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT-TTEEEEESCHHHH-------------
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHH-------------
Confidence 36899999999999999998874 4 678999999999999999999988876 3566666543211
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
+......++||+|+++.....+..+++.+.++|||||++++.+..
T Consensus 128 ------l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 128 ------LESLGECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp ------HHTCCSCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred ------HHhcCCCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 011112458999999988888888999999999999999986554
No 92
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.9e-13 Score=114.62 Aligned_cols=118 Identities=14% Similarity=0.196 Sum_probs=87.2
Q ss_pred HHHHHHhh-ccCCCcEEEEcccccHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCcceEEEecCCCCCc
Q 041459 48 CLLLLQSL-IKGGELFLDYGTGSGILGIAAIK--FGAAMSVGVDIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFPA 123 (225)
Q Consensus 48 ~~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~--~~~~~v~~vDi~~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~ 123 (225)
+.+.+... ..++.+|||+|||+|.++..+++ .+..+++|+|+++.+++.|++++... +.. .++.+...+...++.
T Consensus 25 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~v~~~~~d~~~~~~ 103 (299)
T 3g5t_A 25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY-KNVSFKISSSDDFKF 103 (299)
T ss_dssp HHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CC-TTEEEEECCTTCCGG
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCC-CceEEEEcCHHhCCc
Confidence 34444443 34788999999999999999886 36788999999999999999998776 222 456777776655421
Q ss_pred cccccccccccccccccccCCCCCCceeEEEeccchhH--HHHHHHHHHHhccCCeEEEEe
Q 041459 124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~~LkpgG~l~~~ 182 (225)
. ..... ..++||+|+++..+++ +..++..+.+.|||||.+++.
T Consensus 104 ~---~~~~~-------------~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 104 L---GADSV-------------DKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp G---CTTTT-------------TSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred c---ccccc-------------cCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEE
Confidence 0 00000 1278999999887765 567899999999999999883
No 93
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.52 E-value=3.4e-13 Score=110.23 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=77.4
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
+.++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+ .++.+...+..... .+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~v~~~~~d~~~~~--------~~-- 137 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER----ENIIPILGDANKPQ--------EY-- 137 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC----TTEEEEECCTTCGG--------GG--
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC----CCeEEEECCCCCcc--------cc--
Confidence 446789999999999999998875 6678999999999999999887544 23555555544310 00
Q ss_pred ccccccccCCCCCCceeEEEeccchh-HHHHHHHHHHHhccCCeEEEEe
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLN-PLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~-~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
......||+|+.+.+.. ....++..+.+.|||||.++++
T Consensus 138 ---------~~~~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 138 ---------ANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp ---------TTTSCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------cccCccEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 00126799999765432 3466799999999999999985
No 94
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.51 E-value=1.5e-13 Score=112.25 Aligned_cols=110 Identities=20% Similarity=0.239 Sum_probs=85.4
Q ss_pred HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccc
Q 041459 47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMN 126 (225)
Q Consensus 47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.+...+...+.++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++... ..+.+...+...++.
T Consensus 42 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~~--- 112 (242)
T 3l8d_A 42 TIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEG-----PDLSFIKGDLSSLPF--- 112 (242)
T ss_dssp THHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTCB-----TTEEEEECBTTBCSS---
T ss_pred HHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhccc-----CCceEEEcchhcCCC---
Confidence 34455555566789999999999999999988854 799999999999999876421 235566655544321
Q ss_pred ccccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459 127 ERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+.++||+|+++..+++ ...++..+.+.|||||.++++..
T Consensus 113 -------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 154 (242)
T 3l8d_A 113 -------------------ENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAIL 154 (242)
T ss_dssp -------------------CTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -------------------CCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEc
Confidence 4678999999887764 56789999999999999999753
No 95
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=99.51 E-value=9.1e-14 Score=118.39 Aligned_cols=141 Identities=13% Similarity=0.098 Sum_probs=97.5
Q ss_pred CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh--cCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++.. .++...++.+...++..+ +.
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~-----------l~ 158 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY-----------VR 158 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-----------GG
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-----------Hh
Confidence 5689999999999999999886 678999999999999999998754 333224566665543211 00
Q ss_pred ccccccccCCCCCCceeEEEeccchh--------HHHHHHHHHHHhccCCeEEEEeccC----CCcHHHHHHHHHhhhhh
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLN--------PLLQLADHIVSYAKPGAVVGISGIL----SEQLPHIINRYSEFLED 202 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~~~~~~~ 202 (225)
. ..++||+|+++++.. ....+++.+.+.|||||++++.... ......+.+.+++.|..
T Consensus 159 --------~--~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~ 228 (296)
T 1inl_A 159 --------K--FKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPI 228 (296)
T ss_dssp --------G--CSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSE
T ss_pred --------h--CCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCc
Confidence 0 246799999987543 1267889999999999999996332 12344555566655554
Q ss_pred hccc-------ccCCceEEEeeee
Q 041459 203 ILLS-------EMDDWTCVSGTKK 219 (225)
Q Consensus 203 ~~~~-------~~~~w~~~~~~k~ 219 (225)
+... ..+.|.-+.++|+
T Consensus 229 v~~~~~~vp~~p~g~~~f~~as~~ 252 (296)
T 1inl_A 229 TRVYLGFMTTYPSGMWSYTFASKG 252 (296)
T ss_dssp EEEEEEECTTSTTSEEEEEEEESS
T ss_pred eEEEEeecCccCCCceEEEEecCC
Confidence 4332 2577888777765
No 96
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.51 E-value=2.4e-13 Score=110.38 Aligned_cols=123 Identities=13% Similarity=0.242 Sum_probs=90.1
Q ss_pred CCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++.+|||+|||+|..++.+++. +..+++++|+++.+++.|++++..+++. +++.+...+.... +...
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------l~~~--- 126 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ-DKVTILNGASQDL-------IPQL--- 126 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHHHH-------GGGT---
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CceEEEECCHHHH-------HHHH---
Confidence 6789999999999999998874 3578999999999999999999988875 3566666543211 0000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHH---HHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~---~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
..-...++||+|+++...+.+. .++..+ ++|||||++++.+........+.+.++.
T Consensus 127 ------~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 185 (221)
T 3u81_A 127 ------KKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRG 185 (221)
T ss_dssp ------TTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHH
T ss_pred ------HHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhh
Confidence 0000126899999988766554 355555 9999999999987776666666666654
No 97
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.51 E-value=4.9e-14 Score=116.00 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=78.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..+|.+|||||||+|..+..+++....+++++|+++.+++.|+++....+. .+.+...+.... ....
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~---~~~~~~~~a~~~-------~~~~--- 124 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH---KVIPLKGLWEDV-------APTL--- 124 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS---EEEEEESCHHHH-------GGGS---
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC---ceEEEeehHHhh-------cccc---
Confidence 457899999999999999999887667899999999999999998876653 244444432111 1111
Q ss_pred cccccccCCCCCCceeEEEeccch--------hHHHHHHHHHHHhccCCeEEEEe
Q 041459 136 LSSHEIRGISETEKYDVVIANILL--------NPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
+++.||.|+.+... .....+++++.++|||||++++.
T Consensus 125 ----------~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 125 ----------PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp ----------CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ----------cccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 56789999875432 23567899999999999999884
No 98
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.51 E-value=1.7e-13 Score=110.35 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=79.4
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++....+ .+.+...+...++
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~d~~~~~--------------- 110 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRWS----HISWAATDILQFS--------------- 110 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTTCS----SEEEEECCTTTCC---------------
T ss_pred CCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcccCC----CeEEEEcchhhCC---------------
Confidence 56799999999999999998875 479999999999999998876432 3566666654431
Q ss_pred cccccCCCCCCceeEEEeccchhH------HHHHHHHHHHhccCCeEEEEec
Q 041459 138 SHEIRGISETEKYDVVIANILLNP------LLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+.++||+|+++..+++ ...++..+.++|||||.++++.
T Consensus 111 --------~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 111 --------TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp --------CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred --------CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 4678999999877754 2467999999999999999964
No 99
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.51 E-value=1.2e-13 Score=110.53 Aligned_cols=112 Identities=18% Similarity=0.116 Sum_probs=86.4
Q ss_pred CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
++.+|||+|||+|.++..++.. +..+++++|+++.+++.|++++..+++.+ +.+...+.....
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~-------------- 128 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN--IEPVQSRVEEFP-------------- 128 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS--EEEEECCTTTSC--------------
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--eEEEecchhhCC--------------
Confidence 4789999999999999988874 66789999999999999999998887653 566655554331
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHH
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 196 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (225)
+.++||+|+++. +.++..++..+.++|+|||.+++.. ......++.+..
T Consensus 129 ---------~~~~~D~i~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~-~~~~~~~~~~~~ 177 (207)
T 1jsx_A 129 ---------SEPPFDGVISRA-FASLNDMVSWCHHLPGEQGRFYALK-GQMPEDEIALLP 177 (207)
T ss_dssp ---------CCSCEEEEECSC-SSSHHHHHHHHTTSEEEEEEEEEEE-SSCCHHHHHTSC
T ss_pred ---------ccCCcCEEEEec-cCCHHHHHHHHHHhcCCCcEEEEEe-CCCchHHHHHHh
Confidence 346899999875 4567889999999999999998853 333444444433
No 100
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.51 E-value=2e-13 Score=112.81 Aligned_cols=131 Identities=14% Similarity=0.111 Sum_probs=89.7
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCC---------------------------C
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGP---------------------------K 109 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~---------------------------~ 109 (225)
.++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++...+... .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 3568999999999999998887766689999999999999998875433100 0
Q ss_pred cc-eEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-------HHHHHHHHHHHhccCCeEEEE
Q 041459 110 KM-KLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 110 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~~~~l~~~~~~LkpgG~l~~ 181 (225)
.+ .+...+...... . .-...++||+|+++..++ .+..++.++.++|||||.+++
T Consensus 135 ~v~~~~~~d~~~~~~--------~----------~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 196 (265)
T 2i62_A 135 AIKQVLKCDVTQSQP--------L----------GGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVM 196 (265)
T ss_dssp HEEEEEECCTTSSST--------T----------TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hheeEEEeeeccCCC--------C----------CccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Confidence 13 444444332210 0 000227899999988876 466789999999999999998
Q ss_pred eccCC---------------CcHHHHHHHHHhh-hhhhcc
Q 041459 182 SGILS---------------EQLPHIINRYSEF-LEDILL 205 (225)
Q Consensus 182 ~~~~~---------------~~~~~~~~~~~~~-~~~~~~ 205 (225)
.+... -...++.+.+.+. |..+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 236 (265)
T 2i62_A 197 VDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQF 236 (265)
T ss_dssp EEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEE
T ss_pred EecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEE
Confidence 65321 1344666777654 654443
No 101
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.51 E-value=3.1e-13 Score=113.61 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=84.5
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+.++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|+++....+.. ..+.+...+....+.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~------------ 128 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR-FKVFFRAQDSYGRHM------------ 128 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS-SEEEEEESCTTTSCC------------
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ccEEEEECCcccccc------------
Confidence 4678999999999999999888877778999999999999999998876653 345566655543311
Q ss_pred cccccccCCCCCCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
...++||+|+++..+++ ...++..+.++|||||.+++...
T Consensus 129 ---------~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 129 ---------DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp ---------CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ---------CCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 03568999999876643 46789999999999999998654
No 102
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.51 E-value=1.2e-13 Score=112.85 Aligned_cols=122 Identities=13% Similarity=0.196 Sum_probs=90.6
Q ss_pred chHHHHHHHHHhhcc--CCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC
Q 041459 43 ATTKLCLLLLQSLIK--GGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD 118 (225)
Q Consensus 43 ~~~~~~~~~L~~~~~--~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 118 (225)
+....++..+..... ++.+|||+|||+|..++.+++. + ..+++++|+++.+++.|++++...++..+++.+...+.
T Consensus 39 ~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda 118 (221)
T 3dr5_A 39 EMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRP 118 (221)
T ss_dssp HHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCH
T ss_pred HHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCH
Confidence 344444444443322 2349999999999999998873 3 57899999999999999999998887533566665443
Q ss_pred CCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 119 RTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
... ...+ ..++||+|+++.....+..+++.+.++|||||++++.+.
T Consensus 119 ~~~-------l~~~-------------~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 119 LDV-------MSRL-------------ANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp HHH-------GGGS-------------CTTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred HHH-------HHHh-------------cCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 211 1011 257899999998888888899999999999999999544
No 103
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=99.50 E-value=1e-13 Score=121.63 Aligned_cols=99 Identities=21% Similarity=0.297 Sum_probs=82.2
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
+|++|||+|||+|.+++.+++.|+.+|+|+|.++ +++.|++++..|++. +++.+...+.+.+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~-~~i~~i~~~~~~~~--------------- 145 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLE-DRVHVLPGPVETVE--------------- 145 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCT-TTEEEEESCTTTCC---------------
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCC-ceEEEEeeeeeeec---------------
Confidence 6899999999999999999999999999999996 889999999999987 56777776665442
Q ss_pred cccccCCCCCCceeEEEeccchh------HHHHHHHHHHHhccCCeEEEE
Q 041459 138 SHEIRGISETEKYDVVIANILLN------PLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~------~~~~~l~~~~~~LkpgG~l~~ 181 (225)
.++++|+|++.+... .+..++....++|||||.++.
T Consensus 146 --------lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 146 --------LPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp --------CSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred --------CCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 357899999965421 256677778899999999875
No 104
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.50 E-value=3.3e-13 Score=110.11 Aligned_cols=98 Identities=17% Similarity=0.156 Sum_probs=77.5
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++....+. .+.+...+...++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~--------------- 97 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGL---KPRLACQDISNLN--------------- 97 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTC---CCEEECCCGGGCC---------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHHHHHHHHHHHhhcCC---CeEEEecccccCC---------------
Confidence 67899999999999999988875 4699999999999999999876654 2445544432221
Q ss_pred cccccCCCCCCceeEEEecc-chhH------HHHHHHHHHHhccCCeEEEEe
Q 041459 138 SHEIRGISETEKYDVVIANI-LLNP------LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~-~~~~------~~~~l~~~~~~LkpgG~l~~~ 182 (225)
..++||+|+++. .+++ ...++..+.++|||||.+++.
T Consensus 98 --------~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 98 --------INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp --------CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred --------ccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 236899999987 6544 467899999999999999984
No 105
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.50 E-value=2.5e-13 Score=112.23 Aligned_cols=118 Identities=23% Similarity=0.300 Sum_probs=91.8
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
..++.+|||+|||+|.++..+++. + ..+++++|+++.+++.|++++..+++. +.+.+...+....
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~------------ 157 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD-DRVTIKLKDIYEG------------ 157 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT-TTEEEECSCGGGC------------
T ss_pred CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC-CceEEEECchhhc------------
Confidence 457889999999999999998875 4 678999999999999999999888875 3355554443211
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
.+..+||+|+++++.. ..+++++.+.|||||.+++.+...+...++.+.+++.
T Consensus 158 -----------~~~~~~D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~ 210 (255)
T 3mb5_A 158 -----------IEEENVDHVILDLPQP--ERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREF 210 (255)
T ss_dssp -----------CCCCSEEEEEECSSCG--GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred -----------cCCCCcCEEEECCCCH--HHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 1456799999987643 5678899999999999999876666666666666543
No 106
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.50 E-value=1.8e-13 Score=114.03 Aligned_cols=104 Identities=18% Similarity=0.112 Sum_probs=76.4
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh----------cCC-----CCCcceEEEecCCCC
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL----------NNI-----GPKKMKLHLVPDRTF 121 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~----------~~~-----~~~~~~~~~~~~~~~ 121 (225)
.++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.|+++... .+. ....+.+...+...+
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 4678999999999999999999876 799999999999999766431 000 112456666555443
Q ss_pred CccccccccccccccccccccCCCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEEe
Q 041459 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
+. ...++||+|+++..+. ....++..+.++|||||.+++.
T Consensus 146 ~~---------------------~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 146 PR---------------------ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp GG---------------------GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred Cc---------------------ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 21 0137899999876553 2457899999999999998753
No 107
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.49 E-value=4.5e-13 Score=114.36 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=83.7
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
+.++.+|||+|||+|.++..+++. +. +++|+|+++.+++.|+++....++. ..+.+...+...+
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~------------- 152 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTN-RSRQVLLQGWEDF------------- 152 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCS-SCEEEEESCGGGC-------------
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECChHHC-------------
Confidence 346889999999999999998875 54 7999999999999999998877765 3455555443221
Q ss_pred ccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSEQ 188 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~ 188 (225)
+++||+|+++.++++ +..++..+.++|||||.+++.++....
T Consensus 153 ------------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 153 ------------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp ------------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred ------------CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 367999999877654 477899999999999999997665433
No 108
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.49 E-value=1.6e-13 Score=111.20 Aligned_cols=111 Identities=15% Similarity=0.212 Sum_probs=85.9
Q ss_pred CCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++. +++.+...+.... .... .
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------~~~~-~- 133 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS-DKIGLRLSPAKDT-------LAEL-I- 133 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCHHHH-------HHHH-H-
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEEeCCHHHH-------HHHh-h-
Confidence 6789999999999999998874 3 678999999999999999999888876 3466665443111 0000 0
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
.-...++||+|+++.+...+..+++.+.++|||||++++.+..
T Consensus 134 -------~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 134 -------HAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp -------TTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred -------hccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 0001168999999998888889999999999999999996554
No 109
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.49 E-value=4.3e-13 Score=106.81 Aligned_cols=101 Identities=19% Similarity=0.191 Sum_probs=79.0
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++ +|||+|||+|.++..+++.+. +++|+|+++.+++.|+++....+. .+.+...+....+.
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~------------- 90 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV---KITTVQSNLADFDI------------- 90 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC---CEEEECCBTTTBSC-------------
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC---ceEEEEcChhhcCC-------------
Confidence 356 999999999999999888754 799999999999999999877664 24455544433311
Q ss_pred ccccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCeEEEEecc
Q 041459 137 SSHEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+.+.||+|+++... .....++..+.++|||||.+++.++
T Consensus 91 ---------~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 132 (202)
T 2kw5_A 91 ---------VADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGF 132 (202)
T ss_dssp ---------CTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred ---------CcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 45789999996543 3467789999999999999999754
No 110
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.49 E-value=3.2e-13 Score=107.87 Aligned_cols=105 Identities=20% Similarity=0.239 Sum_probs=78.9
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..++.....+++|+|+++.+++.|++++...+. .+.+...+...++.
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~------------ 85 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF---KLNISKGDIRKLPF------------ 85 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTC---CCCEEECCTTSCCS------------
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC---ceEEEECchhhCCC------------
Confidence 346789999999999885543333345799999999999999998876552 25566655544321
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
+.++||+|+++.++++ ...+++++.+.|||||.+++..+.
T Consensus 86 ----------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 86 ----------KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp ----------CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ----------CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 4678999999766543 467899999999999999987543
No 111
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.49 E-value=3.3e-13 Score=112.68 Aligned_cols=104 Identities=21% Similarity=0.311 Sum_probs=84.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
..++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++...++.+ +.+...+...++.
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--~~~~~~d~~~~~~----------- 101 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN--VKFLQANIFSLPF----------- 101 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCS--EEEEECCGGGCCS-----------
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC--cEEEEcccccCCC-----------
Confidence 357889999999999999998875 46789999999999999999998877653 5555554433311
Q ss_pred ccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEec
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+.++||+|+++..+++ ...++..+.++|||||.+++.+
T Consensus 102 -----------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 102 -----------EDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp -----------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------CCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 4678999999887755 4678999999999999999864
No 112
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.49 E-value=3.2e-13 Score=111.27 Aligned_cols=119 Identities=10% Similarity=0.054 Sum_probs=82.8
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh------cCCCCCcceEEEecCCCCCccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL------NNIGPKKMKLHLVPDRTFPASMNERV 129 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (225)
.++.+|||+|||+|.++..+++. +...++|+|+++.+++.|++++.. .+.. ++.+...+.... +
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~--nv~~~~~d~~~~-------l 115 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQ--NIACLRSNAMKH-------L 115 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCT--TEEEEECCTTTC-------H
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCC--eEEEEECcHHHh-------h
Confidence 35678999999999999998875 567899999999999999988753 2333 366666555331 0
Q ss_pred cccccccccccccCCCCCCceeEEEeccchhHH-----------HHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHH
Q 041459 130 DGIVEDLSSHEIRGISETEKYDVVIANILLNPL-----------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 196 (225)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (225)
+...+.+.||.|+++.+..+. ..+++.+.++|||||.+++............+.+
T Consensus 116 ------------~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l 181 (235)
T 3ckk_A 116 ------------PNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHF 181 (235)
T ss_dssp ------------HHHCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHH
T ss_pred ------------hhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHH
Confidence 000146789999988765432 3689999999999999998654433333333333
No 113
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.49 E-value=3.9e-13 Score=109.64 Aligned_cols=109 Identities=12% Similarity=0.054 Sum_probs=82.5
Q ss_pred HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccc
Q 041459 47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMN 126 (225)
Q Consensus 47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.+.+.+... .++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++... .+.+...+....
T Consensus 32 ~~~~~l~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~------~v~~~~~d~~~~----- 98 (250)
T 2p7i_A 32 FMVRAFTPF-FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD------GITYIHSRFEDA----- 98 (250)
T ss_dssp HHHHHHGGG-CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS------CEEEEESCGGGC-----
T ss_pred HHHHHHHhh-cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC------CeEEEEccHHHc-----
Confidence 334444332 3578999999999999999988765 699999999999999987542 244554443221
Q ss_pred ccccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHH-HhccCCeEEEEeccCC
Q 041459 127 ERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIV-SYAKPGAVVGISGILS 186 (225)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~-~~LkpgG~l~~~~~~~ 186 (225)
.++++||+|+++..+++ ...++.++. +.|||||.+++++...
T Consensus 99 ------------------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 99 ------------------QLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA 144 (250)
T ss_dssp ------------------CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred ------------------CcCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence 14678999999888765 567899999 9999999999976543
No 114
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.49 E-value=3.4e-13 Score=108.10 Aligned_cols=109 Identities=18% Similarity=0.203 Sum_probs=82.9
Q ss_pred HHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459 48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 48 ~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
...++.....++.+|||+|||+|.++..+ +..+++|+|+++.+++.|+++. ..+.+...+...++.
T Consensus 26 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~---- 91 (211)
T 2gs9_A 26 EERALKGLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-------PEATWVRAWGEALPF---- 91 (211)
T ss_dssp HHHHHHTTCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-------TTSEEECCCTTSCCS----
T ss_pred HHHHHHHhcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcccccCCC----
Confidence 33455555557889999999999998877 4448999999999999998875 124455544443321
Q ss_pred cccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQ 188 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~ 188 (225)
++++||+|+++..+++ ...++.++.+.|||||.++++.+....
T Consensus 92 ------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 137 (211)
T 2gs9_A 92 ------------------PGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALS 137 (211)
T ss_dssp ------------------CSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred ------------------CCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence 4568999999887755 577899999999999999998765543
No 115
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.49 E-value=2.2e-13 Score=118.53 Aligned_cols=102 Identities=20% Similarity=0.247 Sum_probs=84.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++++|||+|||+|.++..+++.+..+++|+|+++ +++.|++++..+++. +++.+...+...++.
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~~------------ 129 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLD-HVVTIIKGKVEEVEL------------ 129 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCT-TTEEEEESCTTTCCC------------
T ss_pred cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCC-CcEEEEECcHHHccC------------
Confidence 347899999999999999999998888999999995 999999999988876 457777776655421
Q ss_pred cccccccCCCCCCceeEEEeccch------hHHHHHHHHHHHhccCCeEEEE
Q 041459 136 LSSHEIRGISETEKYDVVIANILL------NPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~------~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
+.++||+|+++++. ..+..++..+.++|||||.+++
T Consensus 130 ----------~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 130 ----------PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp ----------SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ----------CCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 45789999997642 2356788999999999999874
No 116
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.48 E-value=9.5e-14 Score=114.86 Aligned_cols=111 Identities=18% Similarity=0.253 Sum_probs=86.3
Q ss_pred CCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++.+|||+|||+|..++.+++. + ..+++++|+++.+++.|++++...++. +++.+...+.... .......
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~gda~~~-------l~~~~~~ 131 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE-HKIKLRLGPALDT-------LHSLLNE 131 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT-TTEEEEESCHHHH-------HHHHHHH
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHH-------HHHHhhc
Confidence 6789999999999999998874 3 578999999999999999999988876 4566666553211 0000000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
...++||+|+++.....+..+++.+.++|||||++++.++.
T Consensus 132 ---------~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 132 ---------GGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp ---------HCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred ---------cCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence 01468999999988888888999999999999999996543
No 117
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=99.48 E-value=2.1e-13 Score=115.20 Aligned_cols=140 Identities=14% Similarity=0.166 Sum_probs=96.5
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc--CC-------CCCcceEEEecCCCCCccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN--NI-------GPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~ 127 (225)
..+.+|||+|||+|.++..+++.+..+++++|+++.+++.|++++ .. ++ ...++.+...++..+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~------ 146 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEF------ 146 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHH------
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHH------
Confidence 357899999999999999988777789999999999999999987 33 22 223456655443211
Q ss_pred cccccccccccccccCCCCCCceeEEEeccchh-----H--HHHHHHHHHHhccCCeEEEEeccC----CCcHHHHHHHH
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----P--LLQLADHIVSYAKPGAVVGISGIL----SEQLPHIINRY 196 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~--~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~ 196 (225)
+ . ..++||+|+++.+.. . ..++++.+.+.|+|||++++.... ......+.+.+
T Consensus 147 -----l--------~---~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l 210 (281)
T 1mjf_A 147 -----I--------K---NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEM 210 (281)
T ss_dssp -----H--------H---HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHH
T ss_pred -----h--------c---ccCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHH
Confidence 0 0 146799999987642 1 267889999999999999985321 12234444555
Q ss_pred Hhhhhhhccc------ccCCceEEEeeee
Q 041459 197 SEFLEDILLS------EMDDWTCVSGTKK 219 (225)
Q Consensus 197 ~~~~~~~~~~------~~~~w~~~~~~k~ 219 (225)
+..|...... ..+.|.-+.++|+
T Consensus 211 ~~~f~~v~~~~~~vP~~~g~~~~~~as~~ 239 (281)
T 1mjf_A 211 KKVFDRVYYYSFPVIGYASPWAFLVGVKG 239 (281)
T ss_dssp HHHCSEEEEEEECCTTSSSSEEEEEEEES
T ss_pred HHHCCceEEEEEecCCCCceEEEEEeeCC
Confidence 5445433322 1478998888875
No 118
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.48 E-value=1.2e-13 Score=114.82 Aligned_cols=119 Identities=17% Similarity=0.209 Sum_probs=87.0
Q ss_pred CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
++.+|||+|||+|.+++.++.. +..+++++|+++.+++.|++++..+++.+ +.+...+...++.
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~--v~~~~~d~~~~~~------------- 144 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKG--ARALWGRAEVLAR------------- 144 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS--EEEEECCHHHHTT-------------
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCc--eEEEECcHHHhhc-------------
Confidence 5789999999999999998864 67889999999999999999999888763 6666655432210
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc--CCCcHHHHHHHHHh
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI--LSEQLPHIINRYSE 198 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~~~ 198 (225)
.....++||+|+++.. ..+..+++.+.++|||||.+++..- ..++..++...+..
T Consensus 145 ------~~~~~~~fD~I~s~a~-~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~ 201 (249)
T 3g89_A 145 ------EAGHREAYARAVARAV-APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALER 201 (249)
T ss_dssp ------STTTTTCEEEEEEESS-CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHH
T ss_pred ------ccccCCCceEEEECCc-CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHH
Confidence 0002468999999754 3457889999999999999887422 12333444444444
No 119
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.48 E-value=2.9e-13 Score=109.62 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=85.8
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++. +++.+...+.... ...+..
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------~~~~~~ 128 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN-DRVEVRTGLALDS-------LQQIEN 128 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCHHHH-------HHHHHH
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHH-------HHHHHh
Confidence 36889999999999999998875 3 568999999999999999999888875 3466665543211 001000
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
....+||+|+++.+...+..+++.+.++|||||++++.+..
T Consensus 129 ----------~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 129 ----------EKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp ----------TTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred ----------cCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 01257999999998888889999999999999999986554
No 120
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.48 E-value=1.9e-13 Score=109.63 Aligned_cols=102 Identities=11% Similarity=0.045 Sum_probs=79.4
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++. ..+++++|+++.+++.|++++..+++.+ +.+...+.....
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~------------- 138 (210)
T 3lbf_A 75 LTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHN--VSTRHGDGWQGW------------- 138 (210)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCS--EEEEESCGGGCC-------------
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCc--eEEEECCcccCC-------------
Confidence 457889999999999999998887 5789999999999999999998877653 555555442211
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
...++||+|+++..++++. +.+.+.|||||.+++....
T Consensus 139 ---------~~~~~~D~i~~~~~~~~~~---~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 139 ---------QARAPFDAIIVTAAPPEIP---TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp ---------GGGCCEEEEEESSBCSSCC---THHHHTEEEEEEEEEEECS
T ss_pred ---------ccCCCccEEEEccchhhhh---HHHHHhcccCcEEEEEEcC
Confidence 1356899999987665443 3678999999999996443
No 121
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.48 E-value=6.4e-13 Score=111.38 Aligned_cols=105 Identities=24% Similarity=0.261 Sum_probs=81.9
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++ ...+++|+|+++.+++.|+++. ..+.+...+...++
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~-------------- 113 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY-------PHLHFDVADARNFR-------------- 113 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC-------TTSCEEECCTTTCC--------------
T ss_pred CCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC-------CCCEEEECChhhCC--------------
Confidence 4678999999999999999888 4568999999999999998764 12446665554442
Q ss_pred ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCcHHHH
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQLPHI 192 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 192 (225)
..++||+|+++..+++ ...++.++.+.|||||.+++..........+
T Consensus 114 ---------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 163 (279)
T 3ccf_A 114 ---------VDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYI 163 (279)
T ss_dssp ---------CSSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHH
T ss_pred ---------cCCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHH
Confidence 2468999999988765 5678999999999999999976654443333
No 122
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.48 E-value=3e-13 Score=114.60 Aligned_cols=48 Identities=35% Similarity=0.412 Sum_probs=40.4
Q ss_pred CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
++++|||+|||+|.++..+++. +..+++|+|+++.+++.|++++...+
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~ 94 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYL 94 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhh
Confidence 5889999999999999998874 67789999999999999999876543
No 123
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.47 E-value=3.7e-13 Score=111.11 Aligned_cols=101 Identities=20% Similarity=0.271 Sum_probs=80.7
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++++ .... ..+.+...+...++.
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~-~~~~--~~~~~~~~d~~~~~~------------ 100 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKI-AGVD--RKVQVVQADARAIPL------------ 100 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHT-TTSC--TTEEEEESCTTSCCS------------
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh-hccC--CceEEEEcccccCCC------------
Confidence 4568899999999999999988874 57999999999999999887 2222 346666665544321
Q ss_pred cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEe
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~ 182 (225)
++++||+|+++..+++ ...++.++.+.|||||.+++.
T Consensus 101 ----------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 101 ----------PDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp ----------CTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----------CCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 4678999999888765 467899999999999999986
No 124
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.47 E-value=2.5e-13 Score=111.49 Aligned_cols=110 Identities=10% Similarity=0.075 Sum_probs=81.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++... ..+.+...+...++. ...+
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~~-----~~~~--- 119 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA-----ANISYRLLDGLVPEQ-----AAQI--- 119 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC-----TTEEEEECCTTCHHH-----HHHH---
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc-----cCceEEECccccccc-----cccc---
Confidence 55788999999999999999988765 799999999999999987621 235566555543210 0000
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSEQ 188 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~ 188 (225)
.....||+|+++..+++ ...++.++.++|||||.+++.++....
T Consensus 120 ---------~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 168 (245)
T 3ggd_A 120 ---------HSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGC 168 (245)
T ss_dssp ---------HHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTH
T ss_pred ---------ccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccc
Confidence 01124899999877654 568899999999999999887776544
No 125
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.47 E-value=4.9e-13 Score=114.24 Aligned_cols=143 Identities=16% Similarity=0.163 Sum_probs=98.2
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh--cCCCCCcceEEEecCCCCCccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
.++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++.. .+....++.+...++..+. ...
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~-------~~~- 165 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFV-------RQT- 165 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH-------HSS-
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHH-------Hhc-
Confidence 45789999999999999998876 567899999999999999998742 1222234666655432210 000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHH-------HHHHHHHHHhccCCeEEEEeccCC----CcHHHHHHHHHhh-hh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPL-------LQLADHIVSYAKPGAVVGISGILS----EQLPHIINRYSEF-LE 201 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~-------~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~-~~ 201 (225)
..++||+|+++.+.... ..+++.+.+.|||||++++..... .....+.+.+++. |.
T Consensus 166 ------------~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~ 233 (304)
T 3bwc_A 166 ------------PDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFA 233 (304)
T ss_dssp ------------CTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCS
T ss_pred ------------cCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCC
Confidence 25689999998765331 578999999999999999853321 2345566666665 65
Q ss_pred hhccc-------ccCCceEEEeeee
Q 041459 202 DILLS-------EMDDWTCVSGTKK 219 (225)
Q Consensus 202 ~~~~~-------~~~~w~~~~~~k~ 219 (225)
.+... ..+.|.-+.+.|+
T Consensus 234 ~v~~~~~~vP~yp~g~w~f~~as~~ 258 (304)
T 3bwc_A 234 SVQYALMHVPTYPCGSIGTLVCSKK 258 (304)
T ss_dssp EEEEEECCCTTSTTSCCEEEEEESS
T ss_pred cEEEEEeecccccCcceEEEEEeCC
Confidence 44322 3578988888775
No 126
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.47 E-value=6.4e-13 Score=115.19 Aligned_cols=101 Identities=29% Similarity=0.315 Sum_probs=82.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++.+..+++|+|+++ +++.|++++..+++. +++.+...+...++.
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~------------ 127 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLE-DTITLIKGKIEEVHL------------ 127 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCT-TTEEEEESCTTTSCC------------
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCC-CcEEEEEeeHHHhcC------------
Confidence 346889999999999999999988877999999997 999999999888874 356777666554421
Q ss_pred cccccccCCCCCCceeEEEeccc---h---hHHHHHHHHHHHhccCCeEEE
Q 041459 136 LSSHEIRGISETEKYDVVIANIL---L---NPLLQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~---~---~~~~~~l~~~~~~LkpgG~l~ 180 (225)
+.++||+|+++++ + ..+..++..+.++|||||.++
T Consensus 128 ----------~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 128 ----------PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp ----------SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred ----------CCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 4578999999873 2 235678899999999999997
No 127
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.47 E-value=7.1e-13 Score=110.99 Aligned_cols=104 Identities=18% Similarity=0.163 Sum_probs=78.4
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC-CCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT-FPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 134 (225)
..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|++++..+. +.....+... ...
T Consensus 43 l~~g~~VLDlGcGtG~~a~~La~~g-~~V~gvD~S~~ml~~Ar~~~~~~~-----v~~~~~~~~~~~~~----------- 105 (261)
T 3iv6_A 43 IVPGSTVAVIGASTRFLIEKALERG-ASVTVFDFSQRMCDDLAEALADRC-----VTIDLLDITAEIPK----------- 105 (261)
T ss_dssp CCTTCEEEEECTTCHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTSSSC-----CEEEECCTTSCCCG-----------
T ss_pred CCCcCEEEEEeCcchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhcc-----ceeeeeeccccccc-----------
Confidence 4568899999999999999999876 479999999999999999876441 2333333221 000
Q ss_pred ccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCC
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSE 187 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~ 187 (225)
...++||+|+++..+++ ....+..+.++| |||.+++++....
T Consensus 106 ----------~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~ 152 (261)
T 3iv6_A 106 ----------ELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGF 152 (261)
T ss_dssp ----------GGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSC
T ss_pred ----------ccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCc
Confidence 02568999999887653 456889999999 9999999866543
No 128
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.47 E-value=2.2e-12 Score=103.42 Aligned_cols=99 Identities=14% Similarity=0.174 Sum_probs=78.2
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++ .+.. .+.+...+...+
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~----~~~~--~~~~~~~d~~~~-------------- 102 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGR----HGLD--NVEFRQQDLFDW-------------- 102 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHGG----GCCT--TEEEEECCTTSC--------------
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHh----cCCC--CeEEEecccccC--------------
Confidence 3457899999999999999988874 479999999999999986 3322 355665554332
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.+.++||+|+++..+++ ...+++++.+.|||||.+++.+.
T Consensus 103 ---------~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 103 ---------TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp ---------CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 15778999999887755 36789999999999999998755
No 129
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.47 E-value=2.7e-13 Score=115.80 Aligned_cols=113 Identities=17% Similarity=0.126 Sum_probs=76.3
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC----cceEEEecCCCCCccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK----KMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++....+.... .+.+...+...-.. . .
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~---~--~--- 119 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTF---V--S--- 119 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSH---H--H---
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchh---h--h---
Confidence 3789999999999866666666667899999999999999998765543210 12233332211000 0 0
Q ss_pred cccccccccCCCCCCceeEEEeccchh------HHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLN------PLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.++...+.++||+|+|...++ +...++.++.++|||||.++++..
T Consensus 120 ------~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 120 ------SVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp ------HHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ------hhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 000011456899999977654 357889999999999999998755
No 130
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.47 E-value=1.3e-13 Score=114.07 Aligned_cols=111 Identities=18% Similarity=0.195 Sum_probs=77.0
Q ss_pred CCCcEEEEcccccHHHHHHHhc---CCCeEEEEeCCHHHHHHHHHHHHhc---CCCCC----------------------
Q 041459 58 GGELFLDYGTGSGILGIAAIKF---GAAMSVGVDIDPQAIKSAHQNAALN---NIGPK---------------------- 109 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~---~~~~v~~vDi~~~~l~~a~~~~~~~---~~~~~---------------------- 109 (225)
++.+|||+|||+|.+++.+++. +..+++|+|+|+.+++.|++++..+ ++.+.
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 4679999999999999988764 4568999999999999999988755 33210
Q ss_pred --cce-------------EEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH------------H
Q 041459 110 --KMK-------------LHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP------------L 162 (225)
Q Consensus 110 --~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~------------~ 162 (225)
.+. +...+..... ... ......+||+|++|+|+.. +
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~-------~~~----------~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~ 193 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPR-------ALS----------AVLAGSAPDVVLTDLPYGERTHWEGQVPGQPV 193 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGG-------GHH----------HHHTTCCCSEEEEECCGGGSSSSSSCCCHHHH
T ss_pred hhhhhhhccccccccccceeeccccccc-------ccc----------cccCCCCceEEEeCCCeeccccccccccccHH
Confidence 033 4433322110 000 0001237999999988643 3
Q ss_pred HHHHHHHHHhccCCeEEEEeccC
Q 041459 163 LQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 163 ~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
..++..+.++|||||++++++..
T Consensus 194 ~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 194 AGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHHHHHHHHSCTTCEEEEEESS
T ss_pred HHHHHHHHHhcCCCcEEEEeCcc
Confidence 47899999999999999985443
No 131
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.46 E-value=4.9e-13 Score=114.06 Aligned_cols=113 Identities=15% Similarity=0.009 Sum_probs=82.2
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCcceEEEecCCCCCccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI-----GPKKMKLHLVPDRTFPASMNERVDG 131 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (225)
.++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|+++....+. ....+.+...+....+. ..
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~~- 106 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELL-----ID- 106 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCS-----TT-
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccch-----hh-
Confidence 36789999999999999988877777899999999999999998765421 11235566665544310 00
Q ss_pred cccccccccccCCC-CCCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEEeccCC
Q 041459 132 IVEDLSSHEIRGIS-ETEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 132 ~~~~~~~~~~~~~~-~~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (225)
.+. +.++||+|+++..+++ ...++.++.++|||||.++++....
T Consensus 107 -----------~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 107 -----------KFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp -----------TCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred -----------hcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 000 2358999999887744 3578999999999999999976643
No 132
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.46 E-value=4e-13 Score=115.93 Aligned_cols=143 Identities=18% Similarity=0.236 Sum_probs=94.4
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CC-CeEEEEeCCHHHHHHHHHHHHhc-------CCC--CCcceEEEecCCCCCcc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GA-AMSVGVDIDPQAIKSAHQNAALN-------NIG--PKKMKLHLVPDRTFPAS 124 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~-~~v~~vDi~~~~l~~a~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~ 124 (225)
+.++.+|||+|||+|.++..+++. +. .+++++|+++.+++.|++++... ++. ...+.+...+......
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~- 181 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE- 181 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc-
Confidence 457899999999999999998875 44 78999999999999999998743 221 1245666655433210
Q ss_pred ccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh---h-
Q 041459 125 MNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF---L- 200 (225)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~---~- 200 (225)
.+ +.+.||+|+++.+.. ..++..+.+.|||||.+++......+...+.+.+++. +
T Consensus 182 ------~~-------------~~~~fD~V~~~~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~ 240 (336)
T 2b25_A 182 ------DI-------------KSLTFDAVALDMLNP--HVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALS 240 (336)
T ss_dssp -------------------------EEEEEECSSST--TTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEE
T ss_pred ------cc-------------CCCCeeEEEECCCCH--HHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCcc
Confidence 00 345799999986543 2368899999999999998766555666666655542 1
Q ss_pred -hhhcccccCCceEEEeeeec
Q 041459 201 -EDILLSEMDDWTCVSGTKKR 220 (225)
Q Consensus 201 -~~~~~~~~~~w~~~~~~k~~ 220 (225)
..+.......|..+.++|+.
T Consensus 241 ~~~~~~~~~~~w~~~~~~~~~ 261 (336)
T 2b25_A 241 CEKISEVIVRDWLVCLAKQKN 261 (336)
T ss_dssp EEEEECCCCCCEEECC-----
T ss_pred cceEEEecccceEEEeecccc
Confidence 11223345679887666544
No 133
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=99.46 E-value=4.3e-13 Score=115.51 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=97.1
Q ss_pred CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh--cCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++.. +++...++++...++..+ +.
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~-----------l~ 184 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF-----------LE 184 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH-----------HH
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH-----------Hh
Confidence 5689999999999999998886 578899999999999999998765 233223456665443211 00
Q ss_pred ccccccccCCCCCCceeEEEeccc--hhH----H-HHHHHHHHHhccCCeEEEEeccCC----CcHHHHHHHHHhhhhhh
Q 041459 135 DLSSHEIRGISETEKYDVVIANIL--LNP----L-LQLADHIVSYAKPGAVVGISGILS----EQLPHIINRYSEFLEDI 203 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~--~~~----~-~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~~~~~ 203 (225)
. ..++||+|+++++ ..+ + ..+++.+.+.|||||++++..... +....+.+.+++.|..+
T Consensus 185 --------~--~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v 254 (321)
T 2pt6_A 185 --------N--VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKV 254 (321)
T ss_dssp --------H--CCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEE
T ss_pred --------h--cCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCe
Confidence 0 2467999999873 211 1 688999999999999999853221 23344555555555443
Q ss_pred ccc-------ccCCceEEEeeee
Q 041459 204 LLS-------EMDDWTCVSGTKK 219 (225)
Q Consensus 204 ~~~-------~~~~w~~~~~~k~ 219 (225)
... ..|.|.-+.++|+
T Consensus 255 ~~~~~~vp~~~~g~w~f~~as~~ 277 (321)
T 2pt6_A 255 EYANISIPTYPCGCIGILCCSKT 277 (321)
T ss_dssp EEEEEECTTSGGGEEEEEEEESS
T ss_pred EEEEEEeccccCceEEEEEeeCC
Confidence 322 3468887777765
No 134
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.46 E-value=8.3e-13 Score=113.86 Aligned_cols=101 Identities=25% Similarity=0.285 Sum_probs=81.9
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++.+..+++|+|++ .+++.|++++..+++. +++.+...+....+.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~------------- 101 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFS-DKITLLRGKLEDVHL------------- 101 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCT-TTEEEEESCTTTSCC-------------
T ss_pred cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCC-CCEEEEECchhhccC-------------
Confidence 4788999999999999999998888899999999 5999999999888875 456676666544321
Q ss_pred ccccccCCCCCCceeEEEeccchhH------HHHHHHHHHHhccCCeEEEE
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP------LLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~------~~~~l~~~~~~LkpgG~l~~ 181 (225)
+.++||+|+++++.+. +..++..+.++|||||.++.
T Consensus 102 ---------~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 102 ---------PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp ---------SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ---------CCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 3478999999865322 56788889999999999974
No 135
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=99.46 E-value=7.9e-13 Score=116.00 Aligned_cols=139 Identities=16% Similarity=0.086 Sum_probs=95.2
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
..++.+|||+|||+|.+++.++..+. .+++|+|+++.+++.|++|+..+++. +.+.+...+...++.
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~-~~i~~~~~D~~~~~~----------- 282 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVL-DKIKFIQGDATQLSQ----------- 282 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCG-GGCEEEECCGGGGGG-----------
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCC-CceEEEECChhhCCc-----------
Confidence 45788999999999999999988754 47999999999999999999988874 356677665543321
Q ss_pred ccccccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhh
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LED 202 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~ 202 (225)
+.++||+|++|+|+.. +..+++.+.+.| .|+.+++++ +...+.+.+.+. +..
T Consensus 283 -----------~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~----~~~~~~~~~~~~G~~~ 346 (373)
T 3tm4_A 283 -----------YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITT----EKKAIEEAIAENGFEI 346 (373)
T ss_dssp -----------TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEES----CHHHHHHHHHHTTEEE
T ss_pred -----------ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEEC----CHHHHHHHHHHcCCEE
Confidence 3578999999999642 356788888888 444444432 344444555442 332
Q ss_pred ---hcccccCCceEEEeeeeccc
Q 041459 203 ---ILLSEMDDWTCVSGTKKRAK 222 (225)
Q Consensus 203 ---~~~~~~~~w~~~~~~k~~~~ 222 (225)
......+-++.+...++..+
T Consensus 347 ~~~~~~~nG~l~~~~~~~~~~~~ 369 (373)
T 3tm4_A 347 IHHRVIGHGGLMVHLYVVKLEHH 369 (373)
T ss_dssp EEEEEEEETTEEEEEEEEEETTC
T ss_pred EEEEEEEcCCEEEEEEeccCccC
Confidence 22334444556655555443
No 136
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.46 E-value=5.5e-13 Score=108.85 Aligned_cols=99 Identities=18% Similarity=0.276 Sum_probs=78.6
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|+++.... .+.+...+...++.
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~d~~~~~~-------------- 103 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDT-----GITYERADLDKLHL-------------- 103 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSS-----SEEEEECCGGGCCC--------------
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccC-----CceEEEcChhhccC--------------
Confidence 67899999999999999998887668999999999999998875432 24455544332211
Q ss_pred cccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEec
Q 041459 138 SHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+.++||+|+++.++++ ...++..+.+.|||||.++++.
T Consensus 104 --------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 104 --------PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp --------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence 4678999999887765 5778999999999999999864
No 137
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.46 E-value=3.9e-13 Score=118.07 Aligned_cols=101 Identities=26% Similarity=0.256 Sum_probs=82.8
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.+++.+++.+..+|+|+|++ .+++.|++++..+++. +++.+...+...++
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-------------- 125 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLD-HIVEVIEGSVEDIS-------------- 125 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCT-TTEEEEESCGGGCC--------------
T ss_pred CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCC-CeEEEEECchhhcC--------------
Confidence 4688999999999999999999888899999999 9999999999988876 45667666554331
Q ss_pred ccccccCCCCCCceeEEEeccchh------HHHHHHHHHHHhccCCeEEEEe
Q 041459 137 SSHEIRGISETEKYDVVIANILLN------PLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~------~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
..++||+|+++++.+ .+..++..+.++|||||.++++
T Consensus 126 ---------~~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 126 ---------LPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp ---------CSSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred ---------cCCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 237899999977432 2566889999999999999874
No 138
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.45 E-value=1.3e-12 Score=110.26 Aligned_cols=159 Identities=16% Similarity=0.050 Sum_probs=93.5
Q ss_pred cCCCCchHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeC-CHHHHHHHHHHHHhc-----CCCC-
Q 041459 38 GTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDI-DPQAIKSAHQNAALN-----NIGP- 108 (225)
Q Consensus 38 ~~~~~~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi-~~~~l~~a~~~~~~~-----~~~~- 108 (225)
+...++....+.+++.... .++.+|||+|||+|.+++.+++.+..+|+++|+ ++.+++.|++|+..| ++..
T Consensus 57 g~~~~~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~ 136 (281)
T 3bzb_A 57 TSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETV 136 (281)
T ss_dssp -----CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC--------
T ss_pred CceeecHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccC
Confidence 4344555666666665543 468899999999999999999888778999999 899999999999433 3210
Q ss_pred --CcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccc-hh--HHHHHHHHHHHhcc---C--CeE
Q 041459 109 --KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANIL-LN--PLLQLADHIVSYAK---P--GAV 178 (225)
Q Consensus 109 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~-~~--~~~~~l~~~~~~Lk---p--gG~ 178 (225)
..+.+...+...... .....+ ...+||+|++..+ ++ .+..+++.+.++|+ | ||.
T Consensus 137 ~~~~v~~~~~~~~~~~~---~~~~~~-------------~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~ 200 (281)
T 3bzb_A 137 KRASPKVVPYRWGDSPD---SLQRCT-------------GLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAV 200 (281)
T ss_dssp --CCCEEEECCTTSCTH---HHHHHH-------------SCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCE
T ss_pred CCCCeEEEEecCCCccH---HHHhhc-------------cCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCE
Confidence 123333222111000 000000 2467999998443 32 36788999999999 9 998
Q ss_pred EEEeccCC-----CcHHHHHHHHHh-h-hhhhcccccCCce
Q 041459 179 VGISGILS-----EQLPHIINRYSE-F-LEDILLSEMDDWT 212 (225)
Q Consensus 179 l~~~~~~~-----~~~~~~~~~~~~-~-~~~~~~~~~~~w~ 212 (225)
+++..... .....+.+.+.+ . |..........|.
T Consensus 201 l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~~~~~~~ 241 (281)
T 3bzb_A 201 ALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWLSPLQMD 241 (281)
T ss_dssp EEEEECC--------CTHHHHHHHHSTTEEEEEEECCC---
T ss_pred EEEEEEeeecccchhHHHHHHHHHhcCCEEEEEeccccccc
Confidence 76642221 123344444443 3 4444444556664
No 139
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.45 E-value=1.4e-12 Score=107.53 Aligned_cols=107 Identities=18% Similarity=0.187 Sum_probs=82.4
Q ss_pred HHHHHhh-ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccc
Q 041459 49 LLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMN 126 (225)
Q Consensus 49 ~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (225)
..++... ..++.+|||+|||+|.++..+++. +..+++++|+++.+++.|+++. ..+.+...+...++
T Consensus 23 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~~~~~---- 91 (259)
T 2p35_A 23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-------PNTNFGKADLATWK---- 91 (259)
T ss_dssp HHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-------TTSEEEECCTTTCC----
T ss_pred HHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------CCcEEEECChhhcC----
Confidence 3444433 346789999999999999988764 4567999999999999998771 23556665554431
Q ss_pred ccccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459 127 ERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
..++||+|+++..+++ ...++.++.+.|||||.++++...
T Consensus 92 -------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 92 -------------------PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp -------------------CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred -------------------ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 3568999999988765 467899999999999999997643
No 140
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.45 E-value=2.7e-13 Score=113.86 Aligned_cols=117 Identities=25% Similarity=0.259 Sum_probs=89.1
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
..++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..+ +.. .+.+...+....
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~--~v~~~~~d~~~~----------- 174 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG--NVRTSRSDIADF----------- 174 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCT--TEEEECSCTTTC-----------
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCC--cEEEEECchhcc-----------
Confidence 456889999999999999998875 4678999999999999999998877 643 355555444321
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
.+.+.||+|+++++- ...+++.+.+.|||||.+++.+.......++.+.+.+.
T Consensus 175 ------------~~~~~fD~Vi~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~ 227 (275)
T 1yb2_A 175 ------------ISDQMYDAVIADIPD--PWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSAS 227 (275)
T ss_dssp ------------CCSCCEEEEEECCSC--GGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGG
T ss_pred ------------CcCCCccEEEEcCcC--HHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence 045689999997653 35678899999999999999876655555665555543
No 141
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.45 E-value=5.4e-13 Score=108.93 Aligned_cols=108 Identities=15% Similarity=0.223 Sum_probs=84.8
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|..+..+++. +..+++++|+++.+++.|++++...++. ..+.+...+.... ....
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------~~~~--- 121 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLE-SRIELLFGDALQL-------GEKL--- 121 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCT-TTEEEECSCGGGS-------HHHH---
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECCHHHH-------HHhc---
Confidence 36889999999999999998875 4678999999999999999999888764 2455554433211 0000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
...+.||+|+++.+...+..+++.+.+.|||||.+++.++
T Consensus 122 ---------~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 122 ---------ELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp ---------TTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred ---------ccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 0146899999999888888999999999999999999754
No 142
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.45 E-value=4.7e-13 Score=112.67 Aligned_cols=108 Identities=20% Similarity=0.226 Sum_probs=78.4
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCC--CcceEEEecCCCCCcccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGP--KKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++....+... ..+.+...+...++.
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------- 123 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK----------- 123 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH-----------
T ss_pred cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc-----------
Confidence 3678999999999999999988865 89999999999999998875433221 123333333222100
Q ss_pred ccccccccCCCCCCceeEEEec-cchhH----------HHHHHHHHHHhccCCeEEEEecc
Q 041459 135 DLSSHEIRGISETEKYDVVIAN-ILLNP----------LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~-~~~~~----------~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.+...++||+|+++ ..+++ ...+++++.++|||||.+++...
T Consensus 124 --------~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 124 --------DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp --------HSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred --------ccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 00146789999997 55533 56789999999999999998644
No 143
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.45 E-value=1.2e-12 Score=106.72 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=82.5
Q ss_pred HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccc
Q 041459 47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMN 126 (225)
Q Consensus 47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (225)
...+.+...+.++.+|||+|||+|.++..+++. .+++|+|+++.+++.|+++...++. .+.+...+....+
T Consensus 22 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~---- 92 (243)
T 3d2l_A 22 EWVAWVLEQVEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNR---HVDFWVQDMRELE---- 92 (243)
T ss_dssp HHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTC---CCEEEECCGGGCC----
T ss_pred HHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCC---ceEEEEcChhhcC----
Confidence 334445555667899999999999999998877 7899999999999999999876552 2455554433221
Q ss_pred ccccccccccccccccCCCCCCceeEEEecc-chh------HHHHHHHHHHHhccCCeEEEEec
Q 041459 127 ERVDGIVEDLSSHEIRGISETEKYDVVIANI-LLN------PLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~-~~~------~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
..++||+|+++. .++ ....+++.+.++|||||.+++..
T Consensus 93 -------------------~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 93 -------------------LPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp -------------------CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------CCCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 236899999865 443 34678999999999999999853
No 144
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=99.45 E-value=3.8e-13 Score=115.43 Aligned_cols=142 Identities=18% Similarity=0.234 Sum_probs=99.2
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh--cC-CCCCcceEEEecCCCCCcccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL--NN-IGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
..+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++.. .+ +...++.+...++..+
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~----------- 144 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY----------- 144 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH-----------
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH-----------
Confidence 35689999999999999998876 567899999999999999998764 12 2224566666544221
Q ss_pred ccccccccccCCCCCCceeEEEeccchhH----------HHHHHHHHHHhccCCeEEEEeccC-----CCcHHHHHHHHH
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNP----------LLQLADHIVSYAKPGAVVGISGIL-----SEQLPHIINRYS 197 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~----------~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~~~~~~~~~ 197 (225)
+. . ..++||+|+++.+.+. ...+++.+.+.|||||++++.... .+....+.+.++
T Consensus 145 l~--------~--~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~ 214 (314)
T 1uir_A 145 LE--------R--TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVR 214 (314)
T ss_dssp HH--------H--CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHH
T ss_pred HH--------h--cCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHH
Confidence 00 0 3568999999876533 367899999999999999985321 233455666666
Q ss_pred hhhhhhccc------ccCCceEEEeeee
Q 041459 198 EFLEDILLS------EMDDWTCVSGTKK 219 (225)
Q Consensus 198 ~~~~~~~~~------~~~~w~~~~~~k~ 219 (225)
+.|..+... ..+.|.-+.++|+
T Consensus 215 ~~F~~v~~~~~~vP~~~g~~~~~~as~~ 242 (314)
T 1uir_A 215 EAFRYVRSYKNHIPGFFLNFGFLLASDA 242 (314)
T ss_dssp TTCSEEEEEEEEEGGGTEEEEEEEEESS
T ss_pred HHCCceEEEEEecCCCCCeEEEEEEECC
Confidence 655443322 2467887777765
No 145
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.45 E-value=8.5e-13 Score=108.96 Aligned_cols=106 Identities=15% Similarity=0.068 Sum_probs=79.3
Q ss_pred cCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhc--------CCCCCcceEEEecCCCCCccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALN--------NIGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
.++.+|||+|||+|.+++.+++.+ ..+++|+|+++.+++.|++++..+ ++. ++.+...+....
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~--nv~~~~~D~~~~------ 119 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ--NINVLRGNAMKF------ 119 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT--TEEEEECCTTSC------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC--cEEEEeccHHHH------
Confidence 367899999999999999988764 458999999999999999998765 553 355665554321
Q ss_pred cccccccccccccccCCCCCCceeEEEeccchhHH-----------HHHHHHHHHhccCCeEEEEec
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL-----------LQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~ 183 (225)
++...+...+|.|+++.+..+. ..++..+.++|||||.+++.+
T Consensus 120 -------------l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 120 -------------LPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp -------------GGGTSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------HHHhccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 0111146789999876554332 478999999999999999853
No 146
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.45 E-value=6.8e-13 Score=108.43 Aligned_cols=106 Identities=16% Similarity=0.106 Sum_probs=77.9
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|||+|||+|.++..+++. +..+++|+|+++.+++.+.+++..+ ..+.+...+..... .. ..
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~----~~v~~~~~d~~~~~-----~~-~~- 143 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR----TNIIPVIEDARHPH-----KY-RM- 143 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC----TTEEEECSCTTCGG-----GG-GG-
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc----CCeEEEEcccCChh-----hh-cc-
Confidence 456889999999999999998875 4578999999999988888777654 23555554443310 00 00
Q ss_pred cccccccccCCCCCCceeEEEeccchhH-HHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP-LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
..++||+|+++++... ...++.++.+.|||||.+++++.
T Consensus 144 ------------~~~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 144 ------------LIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp ------------GCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ------------cCCcEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 3568999999887433 34568889999999999999644
No 147
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.45 E-value=6.9e-13 Score=117.14 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=81.3
Q ss_pred ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHH-------HhcCCCCCcceEEEecCCCCCccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNA-------ALNNIGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
+.++.+|||+|||+|.+++.++. .+..+++|+|+++.+++.|++++ ..+++...++.+..++....+..
T Consensus 171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~--- 247 (438)
T 3uwp_A 171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWR--- 247 (438)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHH---
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccc---
Confidence 56789999999999999998875 56667999999999999998765 33455334566666655443110
Q ss_pred cccccccccccccccCCCCCCceeEEEeccch--hHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
. ....+|+|++|.++ ......+.++++.|||||.|++++..
T Consensus 248 --d---------------~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f 290 (438)
T 3uwp_A 248 --E---------------RIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF 290 (438)
T ss_dssp --H---------------HHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCS
T ss_pred --c---------------ccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecc
Confidence 0 01369999998765 34556778899999999999987554
No 148
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.45 E-value=8.4e-13 Score=108.91 Aligned_cols=118 Identities=18% Similarity=0.223 Sum_probs=89.4
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhc-CCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
..++.+|||+|||+|.++..+++. + ..+++++|+++.+++.|++++..+ +. ..+.+...+....+.
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~--~~v~~~~~d~~~~~~--------- 162 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV--ENVRFHLGKLEEAEL--------- 162 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC--CCEEEEESCGGGCCC---------
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC--CCEEEEECchhhcCC---------
Confidence 457889999999999999998875 4 578999999999999999998876 62 345555544322110
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
+.+.||+|+++++.. ..+++.+.++|||||.+++.+.......++.+.+++.
T Consensus 163 -------------~~~~~D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~ 214 (258)
T 2pwy_A 163 -------------EEAAYDGVALDLMEP--WKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAH 214 (258)
T ss_dssp -------------CTTCEEEEEEESSCG--GGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTT
T ss_pred -------------CCCCcCEEEECCcCH--HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence 456899999976533 4678899999999999999776655556666666543
No 149
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.45 E-value=3.9e-13 Score=109.49 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=84.7
Q ss_pred HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC-CCCCcc
Q 041459 46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFPAS 124 (225)
Q Consensus 46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 124 (225)
..+..++.....++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++. ..+.+...+. +.++.
T Consensus 36 ~l~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~- 106 (226)
T 3m33_A 36 LTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARANA-------PHADVYEWNGKGELPA- 106 (226)
T ss_dssp HHHHHHHHHHCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHC-------TTSEEEECCSCSSCCT-
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhC-------CCceEEEcchhhccCC-
Confidence 34444555556678999999999999999999885 57999999999999999871 2355666555 22211
Q ss_pred ccccccccccccccccccCCCC-CCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 125 MNERVDGIVEDLSSHEIRGISE-TEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~-~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
. +++||+|+++. ....++.++.+.|||||.++.. ........+.+.+.+
T Consensus 107 ---------------------~~~~~fD~v~~~~---~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~l~~ 156 (226)
T 3m33_A 107 ---------------------GLGAPFGLIVSRR---GPTSVILRLPELAAPDAHFLYV-GPRLNVPEVPERLAA 156 (226)
T ss_dssp ---------------------TCCCCEEEEEEES---CCSGGGGGHHHHEEEEEEEEEE-ESSSCCTHHHHHHHH
T ss_pred ---------------------cCCCCEEEEEeCC---CHHHHHHHHHHHcCCCcEEEEe-CCcCCHHHHHHHHHH
Confidence 3 67899999973 3456677899999999999832 222234455555554
No 150
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.45 E-value=4.6e-13 Score=110.26 Aligned_cols=104 Identities=14% Similarity=0.131 Sum_probs=78.7
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|.+|||+|||+|.++..+++. +..+|+|+|+++.|++.+++++...+ ++.....+..... . ..
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~----ni~~V~~d~~~p~-----~-~~-- 142 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR----NIFPILGDARFPE-----K-YR-- 142 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT----TEEEEESCTTCGG-----G-GT--
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc----CeeEEEEeccCcc-----c-cc--
Confidence 678999999999999999999974 56889999999999999988865432 2334444332210 0 00
Q ss_pred cccccccccCCCCCCceeEEEeccchhH-HHHHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP-LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.....+|+|+++.+... ...++.++.+.|||||.++++
T Consensus 143 -----------~~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 143 -----------HLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp -----------TTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----------cccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence 04568999999877654 456789999999999999986
No 151
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=99.44 E-value=1.9e-13 Score=115.01 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=81.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|||+|||+|..+..+++. +..+++|+|+++.+++.+++++..+++. .+.+...+...+. ..+
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~--~v~~~~~D~~~~~-------~~~- 150 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL--NTIIINADMRKYK-------DYL- 150 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCHHHHH-------HHH-
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC--cEEEEeCChHhcc-------hhh-
Confidence 457889999999999999998873 4478999999999999999999988875 3555554432210 000
Q ss_pred cccccccccCCCCCCceeEEEeccchhH---------------------HHHHHHHHHHhccCCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP---------------------LLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
. ...+.||+|++++|... ...+++.+.++|||||.+++++
T Consensus 151 ~----------~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st 211 (274)
T 3ajd_A 151 L----------KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST 211 (274)
T ss_dssp H----------HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred h----------hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 0 01467999999977522 3678999999999999998863
No 152
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.44 E-value=6.5e-13 Score=108.86 Aligned_cols=102 Identities=22% Similarity=0.226 Sum_probs=76.3
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.+++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++ +.+...+... ....+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~----------~~~~~~d~~~-------~~~~~--- 97 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK----------FNVVKSDAIE-------YLKSL--- 97 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT----------SEEECSCHHH-------HHHTS---
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh----------cceeeccHHH-------Hhhhc---
Confidence 34678999999999999999888755 599999999999999866 1232222111 00011
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSEQ 188 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~ 188 (225)
++++||+|+++..+++ +..++.++.++|||||.+++.......
T Consensus 98 ----------~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 145 (240)
T 3dli_A 98 ----------PDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS 145 (240)
T ss_dssp ----------CTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS
T ss_pred ----------CCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch
Confidence 4678999999887754 467899999999999999997665433
No 153
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.44 E-value=9.4e-13 Score=110.86 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=83.2
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.++.+|||+|||+|.++..+++. + ..+++|+|+++.+++.|+++....+. ++.+...+...++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~------------ 85 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY---DSEFLEGDATEIE------------ 85 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS---EEEEEESCTTTCC------------
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC---ceEEEEcchhhcC------------
Confidence 46789999999999999998875 4 47899999999999999999876553 3566666654432
Q ss_pred ccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
..++||+|+++..+++ ...++.++.+.|||||.+++.+..
T Consensus 86 -----------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 86 -----------LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp -----------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -----------cCCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 2458999999887765 478899999999999999986544
No 154
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.44 E-value=6.8e-13 Score=111.83 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=82.5
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC----------------------------
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK---------------------------- 109 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~---------------------------- 109 (225)
++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++.......+
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 5789999999999966555554556899999999999999886543210000
Q ss_pred cceEEEecCCC-CCccccccccccccccccccccCCCCCCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEE
Q 041459 110 KMKLHLVPDRT-FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 110 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~ 181 (225)
.+.+...+... .+.. ....+.++||+|+++..+++ +..++.++.++|||||.+++
T Consensus 151 ~~~~~~~D~~~~~~~~-----------------~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~ 213 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLG-----------------AGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL 213 (289)
T ss_dssp EEEEECCCTTSSSTTC-----------------SSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hceEEecccCCCCCcc-----------------ccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 01111222221 1000 00013467999999988766 45689999999999999998
Q ss_pred eccC---------------CCcHHHHHHHHHhh-hhh
Q 041459 182 SGIL---------------SEQLPHIINRYSEF-LED 202 (225)
Q Consensus 182 ~~~~---------------~~~~~~~~~~~~~~-~~~ 202 (225)
.... .-...++.+.+.+. |..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 250 (289)
T 2g72_A 214 IGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKV 250 (289)
T ss_dssp EEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred EEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeE
Confidence 5321 12456677777654 543
No 155
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.43 E-value=8.9e-13 Score=113.15 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=80.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|||+|||+|..+..+++. +..+++|+|+++.+++.+++++..+++.+ +.+...+...++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~--v~~~~~D~~~~~~---------- 183 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN--VILFHSSSLHIGE---------- 183 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS--EEEESSCGGGGGG----------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe--EEEEECChhhccc----------
Confidence 457889999999999999998874 34789999999999999999999888753 5555444322210
Q ss_pred cccccccccCCCCCCceeEEEeccchh-------------------------HHHHHHHHHHHhccCCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-------------------------~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
..+.||+|++++|.. ....+++.+.++|||||.+++++
T Consensus 184 ------------~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st 246 (315)
T 1ixk_A 184 ------------LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST 246 (315)
T ss_dssp ------------GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 245799999987631 02478999999999999998853
No 156
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.43 E-value=1.9e-12 Score=105.24 Aligned_cols=104 Identities=19% Similarity=0.225 Sum_probs=77.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+.++.+|||+|||+|.++..+++. + ..+++|+|+++.+++.+++++..+ ..+.+...+..... ...
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~----~~v~~~~~d~~~~~-----~~~--- 138 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER----RNIVPILGDATKPE-----EYR--- 138 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC----TTEEEEECCTTCGG-----GGT---
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc----CCCEEEEccCCCcc-----hhh---
Confidence 456889999999999999998864 3 478999999999999999887644 23556655543310 000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHH-HHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLL-QLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~-~~l~~~~~~LkpgG~l~~~ 182 (225)
...++||+|+++.+..... .++..+.++|||||.+++.
T Consensus 139 -----------~~~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 139 -----------ALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp -----------TTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----------cccCCceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 0235799999988754443 4499999999999999886
No 157
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.43 E-value=7e-13 Score=106.62 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=82.3
Q ss_pred CCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++. +++.+...+.... .
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------~------ 121 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI-DRVELQVGDPLGI-------A------ 121 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGG-GGEEEEESCHHHH-------H------
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-ceEEEEEecHHHH-------h------
Confidence 6789999999999999998875 3 578999999999999999999877764 3455655443111 0
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.. ..+ ||+|+++.....+..+++.+.++|||||++++.+.
T Consensus 122 ------~~--~~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 122 ------AG--QRD-IDILFMDCDVFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp ------TT--CCS-EEEEEEETTTSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred ------cc--CCC-CCEEEEcCChhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 00 235 99999988777788899999999999999998644
No 158
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.43 E-value=8.4e-13 Score=114.71 Aligned_cols=101 Identities=23% Similarity=0.248 Sum_probs=81.3
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++.+..+++|+|+++ +++.|++++..+++. +++.+...+....+
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~-------------- 112 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT-DRIVVIPGKVEEVS-------------- 112 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCT-TTEEEEESCTTTCC--------------
T ss_pred CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCC-CcEEEEEcchhhCC--------------
Confidence 46889999999999999999988888999999997 889999999888875 35667666554431
Q ss_pred ccccccCCCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEEe
Q 041459 137 SSHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
..++||+|+++++.+ .+...+..+.++|||||.++++
T Consensus 113 ---------~~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 113 ---------LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp ---------CSSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred ---------CCCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 236799999987653 2456777889999999999863
No 159
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.43 E-value=1e-12 Score=104.71 Aligned_cols=102 Identities=20% Similarity=0.128 Sum_probs=80.2
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
+.+..+|||+|||+|.+++.++.. +..+|+|+|+|+.|++.+++++..++... ++.+ .+... ..
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~-~v~~--~d~~~----------~~-- 111 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTI-KYRF--LNKES----------DV-- 111 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSS-EEEE--ECCHH----------HH--
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCc-cEEE--ecccc----------cC--
Confidence 556889999999999999998764 55699999999999999999999888762 2333 32211 11
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHH---HHHHHHHhccCCeEEEEec
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQ---LADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~---~l~~~~~~LkpgG~l~~~~ 183 (225)
+.+.||+|+..-.++.+.+ .+..+.+.|+|||+++-..
T Consensus 112 -----------~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 112 -----------YKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp -----------TTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred -----------CCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence 5778999999988888743 4668999999999987643
No 160
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.43 E-value=1.4e-14 Score=118.84 Aligned_cols=100 Identities=21% Similarity=0.122 Sum_probs=78.6
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++++..+++. ..+.+...+...++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~--------------- 140 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIA-DKIEFICGDFLLLA--------------- 140 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHG---------------
T ss_pred CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCC-cCeEEEECChHHhc---------------
Confidence 68999999999999999999886 78999999999999999999888764 24556555432221
Q ss_pred cccccCCCCCCceeEEEeccchhHHH---HHHHHHHHhccCCeEEEEe
Q 041459 138 SHEIRGISETEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~~~---~~l~~~~~~LkpgG~l~~~ 182 (225)
..++||+|++++++++.. ..+..+.++|+|||.+++.
T Consensus 141 --------~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 141 --------SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp --------GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred --------ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHH
Confidence 356899999999886533 2455678899999986653
No 161
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.43 E-value=2e-12 Score=107.38 Aligned_cols=107 Identities=16% Similarity=0.102 Sum_probs=80.6
Q ss_pred HHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459 48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 48 ~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
+..++.....++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++.. .+ +...+...++.
T Consensus 44 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~----~~----~~~~d~~~~~~---- 110 (260)
T 2avn_A 44 IGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGV----KN----VVEAKAEDLPF---- 110 (260)
T ss_dssp HHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHHTC----SC----EEECCTTSCCS----
T ss_pred HHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcC-CeEEEEeCCHHHHHHHHhhcC----CC----EEECcHHHCCC----
Confidence 344455544578899999999999999988875 479999999999999988753 11 44444433321
Q ss_pred cccccccccccccccCCCCCCceeEEEeccchhH----HHHHHHHHHHhccCCeEEEEeccC
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNP----LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~----~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
+.++||+|++...+.+ ...++.++.+.|||||.+++....
T Consensus 111 ------------------~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 111 ------------------PSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp ------------------CTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ------------------CCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 4678999999765433 567899999999999999987553
No 162
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.43 E-value=3e-12 Score=105.27 Aligned_cols=99 Identities=20% Similarity=0.270 Sum_probs=76.8
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++....+.. +.+...+...++
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~---v~~~~~d~~~~~-------------- 101 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNLK---IEFLQGDVLEIA-------------- 101 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCC---CEEEESCGGGCC--------------
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhcCCc---eEEEECChhhcc--------------
Confidence 357899999999999999988875 47999999999999999998776642 455554443221
Q ss_pred ccccccCCCCCCceeEEEeccc---h---hHHHHHHHHHHHhccCCeEEEEe
Q 041459 137 SSHEIRGISETEKYDVVIANIL---L---NPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~---~---~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
..++||+|++... + .....++..+.+.|||||.+++.
T Consensus 102 ---------~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 102 ---------FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp ---------CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------cCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 2467999997532 1 23567899999999999999874
No 163
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.42 E-value=1.3e-12 Score=109.39 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=89.2
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhc-C-CCCCcceEEEecCCCCCccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALN-N-IGPKKMKLHLVPDRTFPASMNERVDG 131 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (225)
+.++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..+ + +. ..+.+...+....+
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~-~~v~~~~~d~~~~~--------- 166 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP-DNWRLVVSDLADSE--------- 166 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCC-TTEEEECSCGGGCC---------
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCC-CcEEEEECchHhcC---------
Confidence 457889999999999999998874 4678999999999999999998776 4 22 23555544432211
Q ss_pred cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
.+.+.||+|+++.+. ...++..+.++|+|||.+++.+...+...++...+++
T Consensus 167 -------------~~~~~~D~v~~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~ 218 (280)
T 1i9g_A 167 -------------LPDGSVDRAVLDMLA--PWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRA 218 (280)
T ss_dssp -------------CCTTCEEEEEEESSC--GGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred -------------CCCCceeEEEECCcC--HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 035679999997753 3467889999999999999987766666666666664
No 164
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.42 E-value=1.5e-12 Score=105.46 Aligned_cols=104 Identities=15% Similarity=0.111 Sum_probs=72.7
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
++++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+.+.+... . ++.....+..... .+
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~--~v~~~~~d~~~~~--------~~-- 120 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--N--NIIPLLFDASKPW--------KY-- 120 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--S--SEEEECSCTTCGG--------GT--
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--C--CeEEEEcCCCCch--------hh--
Confidence 457889999999999999988874 4568999999999887766555432 1 2344433332210 00
Q ss_pred ccccccccCCCCCCceeEEEeccchhH-HHHHHHHHHHhccCCeEEEEe
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNP-LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-~~~~l~~~~~~LkpgG~l~~~ 182 (225)
....++||+|+++...+. ...++.++.+.|||||.++++
T Consensus 121 ---------~~~~~~fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 121 ---------SGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp ---------TTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------cccccceeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 002368999999865443 334589999999999999986
No 165
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.42 E-value=1.1e-12 Score=110.06 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=89.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+.++.+|||+|||+|.++..+++. + ..+++++|+++.+++.|++++..+++. ..+.+...+....
T Consensus 110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~------------ 176 (277)
T 1o54_A 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI-ERVTIKVRDISEG------------ 176 (277)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG-GGEEEECCCGGGC------------
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-CCEEEEECCHHHc------------
Confidence 446889999999999999998875 4 678999999999999999999877753 2344444332111
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
.+.+.||+|+++++.. ..+++.+.++|+|||.+++.+....+..++.+.+++.
T Consensus 177 -----------~~~~~~D~V~~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~ 229 (277)
T 1o54_A 177 -----------FDEKDVDALFLDVPDP--WNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQEL 229 (277)
T ss_dssp -----------CSCCSEEEEEECCSCG--GGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred -----------ccCCccCEEEECCcCH--HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence 1456899999987643 4678889999999999999776555566666666543
No 166
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.42 E-value=1e-12 Score=107.78 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=86.7
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+.++.+|||+|||+|.++..+++. ..+++++|+++.+++.|+++...+++. ..+.+...+.....
T Consensus 89 ~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~------------- 153 (248)
T 2yvl_A 89 LNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLG-KNVKFFNVDFKDAE------------- 153 (248)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCC-TTEEEECSCTTTSC-------------
T ss_pred CCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-CcEEEEEcChhhcc-------------
Confidence 346889999999999999998887 678999999999999999999877764 23455444332210
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHH
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS 197 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 197 (225)
.....||+|+++++ ....+++.+.++|+|||.+++.....+...++.+.++
T Consensus 154 ---------~~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~ 204 (248)
T 2yvl_A 154 ---------VPEGIFHAAFVDVR--EPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIE 204 (248)
T ss_dssp ---------CCTTCBSEEEECSS--CGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHST
T ss_pred ---------cCCCcccEEEECCc--CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 02457999999876 2346688899999999999997665545555555544
No 167
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.42 E-value=1.8e-12 Score=105.41 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=79.9
Q ss_pred HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccc
Q 041459 47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMN 126 (225)
Q Consensus 47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.+..++.....++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++.. .+.+...+...++
T Consensus 29 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~-------~~~~~~~d~~~~~---- 96 (239)
T 3bxo_A 29 DIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP-------DATLHQGDMRDFR---- 96 (239)
T ss_dssp HHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT-------TCEEEECCTTTCC----
T ss_pred HHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC-------CCEEEECCHHHcc----
Confidence 34455555455788999999999999999887654 79999999999999987641 2455555544331
Q ss_pred ccccccccccccccccCCCCCCceeEEEecc-chh------HHHHHHHHHHHhccCCeEEEEecc
Q 041459 127 ERVDGIVEDLSSHEIRGISETEKYDVVIANI-LLN------PLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~-~~~------~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
..++||+|+|.. .++ ....+++.+.+.|||||.+++...
T Consensus 97 -------------------~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 97 -------------------LGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp -------------------CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred -------------------cCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 246799999633 333 346789999999999999999754
No 168
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.42 E-value=2.3e-12 Score=109.06 Aligned_cols=115 Identities=13% Similarity=0.119 Sum_probs=84.1
Q ss_pred HHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCcceEEEecCCCCCcccc
Q 041459 48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG-PKKMKLHLVPDRTFPASMN 126 (225)
Q Consensus 48 ~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 126 (225)
...++.....++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++....++. ..++.+...+...++
T Consensus 72 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~---- 146 (299)
T 3g2m_A 72 AREFATRTGPVSGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA---- 146 (299)
T ss_dssp HHHHHHHHCCCCSCEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC----
T ss_pred HHHHHHhhCCCCCcEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC----
Confidence 333444443445699999999999999998885 46999999999999999998765521 023566666654432
Q ss_pred ccccccccccccccccCCCCCCceeEEEec-cchh-----HHHHHHHHHHHhccCCeEEEEeccCC
Q 041459 127 ERVDGIVEDLSSHEIRGISETEKYDVVIAN-ILLN-----PLLQLADHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~-~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (225)
..++||+|++. ..++ ....++.++.++|||||.+++.....
T Consensus 147 -------------------~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 147 -------------------LDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp -------------------CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred -------------------cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 35789988864 2222 24678999999999999999975543
No 169
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.42 E-value=8.5e-13 Score=109.43 Aligned_cols=110 Identities=15% Similarity=0.253 Sum_probs=83.9
Q ss_pred CCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++.+|||+|||+|..++.+++. + ..+++++|+++.+++.|++++...++. +++.+...+.... ...+...
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~i~~~~gda~~~-------l~~l~~~ 150 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD-HKIDFREGPALPV-------LDEMIKD 150 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG-GGEEEEESCHHHH-------HHHHHHS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CCeEEEECCHHHH-------HHHHHhc
Confidence 5789999999999999998874 3 578999999999999999999888764 4566665543211 0000000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
. ...++||+|+++.....+..+++.+.++|||||++++..
T Consensus 151 -------~-~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 151 -------E-KNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp -------G-GGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred -------c-CCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEec
Confidence 0 014689999998877778899999999999999999854
No 170
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.42 E-value=9.8e-13 Score=107.98 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=84.6
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++. .++.+...+.... ......
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~-------~~~~~~ 130 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE-NKIFLKLGSALET-------LQVLID 130 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHH-------HHHHHH
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CCEEEEECCHHHH-------HHHHHh
Confidence 36889999999999999998875 3 578999999999999999999877764 3455555433110 000000
Q ss_pred ccccccccCCCCC--CceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 135 DLSSHEIRGISET--EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 135 ~~~~~~~~~~~~~--~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
....-......+. ++||+|+++.....+..+++.+.+.|+|||++++..+
T Consensus 131 ~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 131 SKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp CSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred hcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 0000000000022 7899999998888888999999999999999999653
No 171
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.42 E-value=2.7e-14 Score=121.20 Aligned_cols=108 Identities=11% Similarity=0.061 Sum_probs=76.6
Q ss_pred HHHHHhh--ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceE-EEecCCCCCccc
Q 041459 49 LLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKL-HLVPDRTFPASM 125 (225)
Q Consensus 49 ~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 125 (225)
...|..+ ..++.+|||+|||||.++..+++.++.+|+|+|+++.|++.+.++.. ++.. ...+...+..
T Consensus 74 ~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~-------rv~~~~~~ni~~l~~-- 144 (291)
T 3hp7_A 74 EKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDD-------RVRSMEQYNFRYAEP-- 144 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCT-------TEEEECSCCGGGCCG--
T ss_pred HHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-------ccceecccCceecch--
Confidence 3444443 22578999999999999999999888899999999999998654311 1111 1011111100
Q ss_pred cccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 126 NERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
..+ +...||+|+++..+..+..++..+.++|||||.+++.
T Consensus 145 ----~~l-------------~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 145 ----VDF-------------TEGLPSFASIDVSFISLNLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp ----GGC-------------TTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred ----hhC-------------CCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEE
Confidence 000 3345999999998888888999999999999999885
No 172
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.41 E-value=4.6e-12 Score=104.29 Aligned_cols=104 Identities=18% Similarity=0.139 Sum_probs=73.4
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|.+|||+|||+|..+..+++. +..+|+|+|+++.+++...+.+... . ++.....+...... .
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~--nv~~i~~Da~~~~~-----~---- 140 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--P--NIFPLLADARFPQS-----Y---- 140 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--T--TEEEEECCTTCGGG-----T----
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--C--CeEEEEcccccchh-----h----
Confidence 568999999999999999998874 4678999999999876554443322 1 25555555433200 0
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHH-HHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLA-DHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l-~~~~~~LkpgG~l~~~ 182 (225)
....++||+|+++.+......++ ..+.++|||||.++++
T Consensus 141 ----------~~~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 141 ----------KSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp ----------TTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----------hccccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence 00245899999998876555554 4556699999999986
No 173
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=99.41 E-value=2.1e-12 Score=111.80 Aligned_cols=143 Identities=14% Similarity=0.124 Sum_probs=95.3
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCcceEEEecCCCCCccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
..+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++... ++...++.+...++..+ +...
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~-------l~~~- 190 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF-------LKNA- 190 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH-------HHTS-
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH-------HHhc-
Confidence 35789999999999999999876 4678999999999999999988642 44323566665543211 0000
Q ss_pred cccccccccCCCCCCceeEEEeccch--h---H--HHHHHHHHHHhccCCeEEEEec-cCCCc---HHHHHHHHHhhhhh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILL--N---P--LLQLADHIVSYAKPGAVVGISG-ILSEQ---LPHIINRYSEFLED 202 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~--~---~--~~~~l~~~~~~LkpgG~l~~~~-~~~~~---~~~~~~~~~~~~~~ 202 (225)
..++||+|+++.+. . . ...+++.+.++|+|||++++.. ..... .....+.+++.|..
T Consensus 191 ------------~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~ 258 (334)
T 1xj5_A 191 ------------AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKG 258 (334)
T ss_dssp ------------CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSS
T ss_pred ------------cCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHhCcc
Confidence 34689999997652 1 1 3678999999999999999952 22122 22334444444441
Q ss_pred --------hcccccCCceEEEeeee
Q 041459 203 --------ILLSEMDDWTCVSGTKK 219 (225)
Q Consensus 203 --------~~~~~~~~w~~~~~~k~ 219 (225)
+.....+.|.-+.+.|+
T Consensus 259 ~~~~~~~~vP~y~~g~~gf~~as~~ 283 (334)
T 1xj5_A 259 SVNYAWTSVPTYPSGVIGFMLCSTE 283 (334)
T ss_dssp CEEEEEEECTTSGGGEEEEEEEECS
T ss_pred ccceEEEeCCcccCCceEEEEcccC
Confidence 22223467876666665
No 174
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.41 E-value=4.4e-13 Score=109.73 Aligned_cols=106 Identities=12% Similarity=0.128 Sum_probs=77.2
Q ss_pred HhhccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCC-HHHHHHH---HHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459 53 QSLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDID-PQAIKSA---HQNAALNNIGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 53 ~~~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~-~~~l~~a---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
....+++.+|||+|||+|.++..+++ .+..+++|+|+| +.+++.| ++++...++.+ +.+...+...++.
T Consensus 19 ~~~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~--v~~~~~d~~~l~~---- 92 (225)
T 3p2e_A 19 EIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSN--VVFVIAAAESLPF---- 92 (225)
T ss_dssp HHHTTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSS--EEEECCBTTBCCG----
T ss_pred HHhCCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCC--eEEEEcCHHHhhh----
Confidence 33345788999999999999999885 456789999999 7777666 77766666543 5565555544311
Q ss_pred cccccccccccccccCCCCCCceeEEEeccchhHH--------HHHHHHHHHhccCCeEEEE
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL--------LQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~--------~~~l~~~~~~LkpgG~l~~ 181 (225)
. ..+.+|.+.++++.... ..++.++.++|||||.+++
T Consensus 93 ---~--------------~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 93 ---E--------------LKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp ---G--------------GTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred ---h--------------ccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 0 13568888888765432 3578999999999999988
No 175
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=99.41 E-value=1.7e-12 Score=110.88 Aligned_cols=142 Identities=14% Similarity=0.127 Sum_probs=95.5
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh--cCCCCCcceEEEecCCCCCccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
..+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++.. +++...++.+...++..+ +
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~-----------l 162 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF-----------M 162 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-----------H
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH-----------H
Confidence 35789999999999999999886 567899999999999999998764 344334566665543211 0
Q ss_pred cccccccccCCCCCCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEEeccC--C--CcHHHHHHHHHhhhhh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGIL--S--EQLPHIINRYSEFLED 202 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~--~--~~~~~~~~~~~~~~~~ 202 (225)
. . ..++||+|+++.+... ...+++.+.++|+|||++++.... . .....+.+.+++.|..
T Consensus 163 ~--------~--~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~ 232 (304)
T 2o07_A 163 K--------Q--NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPV 232 (304)
T ss_dssp H--------T--CSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSE
T ss_pred h--------h--CCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCC
Confidence 0 0 3568999999876531 246799999999999999986422 1 1234444555555543
Q ss_pred hcc-------cccCCceEEEeeee
Q 041459 203 ILL-------SEMDDWTCVSGTKK 219 (225)
Q Consensus 203 ~~~-------~~~~~w~~~~~~k~ 219 (225)
... ...+.|.-+...|+
T Consensus 233 v~~~~~~vP~~~~g~~g~~~as~~ 256 (304)
T 2o07_A 233 VAYAYCTIPTYPSGQIGFMLCSKN 256 (304)
T ss_dssp EEEEEEECTTSGGGEEEEEEEESS
T ss_pred ceeEEEEeccccCcceEEEEEeCC
Confidence 322 23466776666654
No 176
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.40 E-value=3e-12 Score=120.97 Aligned_cols=130 Identities=16% Similarity=0.196 Sum_probs=92.3
Q ss_pred cccceecCCCCchHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhcCC--CeEEEEeCCHHHHHHHHHHHHhcCC-
Q 041459 32 NPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGA--AMSVGVDIDPQAIKSAHQNAALNNI- 106 (225)
Q Consensus 32 ~~~~~f~~~~~~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~~~--~~v~~vDi~~~~l~~a~~~~~~~~~- 106 (225)
.+.+..++...+......+.+...+ .++.+|||+|||+|.++..+++.+. .+++|+|+++.+++.|++++.....
T Consensus 693 ~p~me~gtFsPPL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnA 772 (950)
T 3htx_A 693 EERMEAAFFKPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNK 772 (950)
T ss_dssp CCCCCCCCSSSCHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTT
T ss_pred hhHHhhCcCCchHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccch
Confidence 3345544445566555555444332 3788999999999999999998753 6899999999999999987653211
Q ss_pred ---CCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeE
Q 041459 107 ---GPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAV 178 (225)
Q Consensus 107 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~ 178 (225)
....+.+...+...++. ..+.||+|+++..++++ ..++..+.+.|||| .
T Consensus 773 kr~gl~nVefiqGDa~dLp~----------------------~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~ 829 (950)
T 3htx_A 773 EACNVKSATLYDGSILEFDS----------------------RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-L 829 (950)
T ss_dssp TCSSCSEEEEEESCTTSCCT----------------------TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-E
T ss_pred hhcCCCceEEEECchHhCCc----------------------ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-E
Confidence 11246666666655432 45789999998887663 34789999999999 7
Q ss_pred EEEecc
Q 041459 179 VGISGI 184 (225)
Q Consensus 179 l~~~~~ 184 (225)
++++..
T Consensus 830 LIISTP 835 (950)
T 3htx_A 830 LIVSTP 835 (950)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 777544
No 177
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.40 E-value=1.2e-12 Score=106.47 Aligned_cols=99 Identities=22% Similarity=0.209 Sum_probs=76.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.|+++....+ .+.+...+....
T Consensus 68 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~----~v~~~~~d~~~~-------------- 128 (231)
T 1vbf_A 68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN----NIKLILGDGTLG-------------- 128 (231)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS----SEEEEESCGGGC--------------
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC----CeEEEECCcccc--------------
Confidence 4567899999999999999988876 789999999999999999887554 245554443221
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
....++||+|+++.++++.. +.+.+.|||||.+++...
T Consensus 129 --------~~~~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 129 --------YEEEKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp --------CGGGCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEEC
T ss_pred --------cccCCCccEEEECCcHHHHH---HHHHHHcCCCcEEEEEEc
Confidence 00346799999988776543 468899999999998754
No 178
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.40 E-value=9.7e-13 Score=109.38 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=75.4
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++. ..+++|+|+++.+++.|+++. ++.+...+...++.
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~--------~~~~~~~d~~~~~~------------- 90 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQ-GLFVYAVEPSIVMRQQAVVHP--------QVEWFTGYAENLAL------------- 90 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTT-TCEEEEECSCHHHHHSSCCCT--------TEEEECCCTTSCCS-------------
T ss_pred CCCCEEEEEcCcccHHHHHHHhC-CCEEEEEeCCHHHHHHHHhcc--------CCEEEECchhhCCC-------------
Confidence 56889999999999999999884 468999999999998776543 24555555544321
Q ss_pred ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+.++||+|+++..+++ ...+++++.+.|| ||.+++.++
T Consensus 91 ---------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 91 ---------PDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp ---------CTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred ---------CCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence 4678999999988765 5778999999999 997777544
No 179
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.40 E-value=3.4e-12 Score=106.27 Aligned_cols=110 Identities=21% Similarity=0.265 Sum_probs=79.9
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CC-CeEEEEeCCHH------HHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GA-AMSVGVDIDPQ------AIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~-~~v~~vDi~~~------~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
++++.+|||+|||+|.++..+++. +. .+++|+|+++. +++.|++++...++. .++.+...+ +....
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~-~~v~~~~~d-~~~~~---- 114 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG-DRLTVHFNT-NLSDD---- 114 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG-GGEEEECSC-CTTTC----
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC-CceEEEECC-hhhhc----
Confidence 457889999999999999998875 33 78999999997 999999998876653 345555544 11100
Q ss_pred cccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
...+ +.++||+|+++.++++ ...+++.+.++++|||.+++.++.
T Consensus 115 -~~~~-------------~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~ 161 (275)
T 3bkx_A 115 -LGPI-------------ADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWS 161 (275)
T ss_dssp -CGGG-------------TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred -cCCC-------------CCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 0000 4578999999888765 344666677777779999997654
No 180
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=99.40 E-value=2.9e-12 Score=102.48 Aligned_cols=96 Identities=22% Similarity=0.277 Sum_probs=74.5
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++..+++ .+.+...+...+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~--------------- 109 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG---KFKVFIGDVSEF--------------- 109 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT---SEEEEESCGGGC---------------
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC---CEEEEECchHHc---------------
Confidence 36789999999999999999988777899999999999999999887775 245555443222
Q ss_pred ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEec
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
..+||+|++|+|++. ...+++.+.+.+ |+ +++.+
T Consensus 110 ----------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~-~~~~~ 148 (207)
T 1wy7_A 110 ----------NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DV-VYSIH 148 (207)
T ss_dssp ----------CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SE-EEEEE
T ss_pred ----------CCCCCEEEEcCCCccccCCchHHHHHHHHHhc--Cc-EEEEE
Confidence 247999999999754 246778888887 54 55545
No 181
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.40 E-value=2.6e-12 Score=116.26 Aligned_cols=100 Identities=23% Similarity=0.240 Sum_probs=81.0
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.+++.+++.+..+++|+|+++ +++.|++++..+++. +++.+...+...++
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~-~~v~~~~~d~~~~~-------------- 220 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT-DRIVVIPGKVEEVS-------------- 220 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCT-TTEEEEESCTTTCC--------------
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCC-CcEEEEECchhhCc--------------
Confidence 36789999999999999999988888999999998 999999999988875 45677766554331
Q ss_pred ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEE
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~ 181 (225)
..++||+|+++++.++ ....+..+.++|||||.+++
T Consensus 221 ---------~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 221 ---------LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp ---------CSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred ---------cCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 2357999999988543 34566778899999999985
No 182
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=99.40 E-value=1.7e-12 Score=113.61 Aligned_cols=154 Identities=11% Similarity=0.070 Sum_probs=90.4
Q ss_pred eeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 041459 27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI 106 (225)
Q Consensus 27 ~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~ 106 (225)
..+.++|+..|.+...........++......+.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|+..+++
T Consensus 182 ~~~~~~~~~F~Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~ 260 (369)
T 3bt7_A 182 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHI 260 (369)
T ss_dssp CEEEEETTSCCCSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCeecCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 56777787666654433333333333332224678999999999999998874 56899999999999999999999887
Q ss_pred CCCcceEEEecCCCCCccccccccccccccccccccCCC-CCCceeEEEeccchhHHHHHHHHHHHhccCCeE-EEEecc
Q 041459 107 GPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGIS-ETEKYDVVIANILLNPLLQLADHIVSYAKPGAV-VGISGI 184 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~-l~~~~~ 184 (225)
.+ +.+...+...+ ...+.....-..+.... ....||+|+++||.... ...+.+.|+++|. ++++|.
T Consensus 261 ~~--v~~~~~d~~~~-------~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 261 DN--VQIIRMAAEEF-------TQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL---DSETEKMVQAYPRILYISCN 328 (369)
T ss_dssp CS--EEEECCCSHHH-------HHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCC---CHHHHHHHTTSSEEEEEESC
T ss_pred Cc--eEEEECCHHHH-------HHHHhhccccccccccccccCCCCEEEECcCcccc---HHHHHHHHhCCCEEEEEECC
Confidence 53 55554443211 00000000000000000 01379999999987532 2334445556555 555665
Q ss_pred CCCcHHHHH
Q 041459 185 LSEQLPHII 193 (225)
Q Consensus 185 ~~~~~~~~~ 193 (225)
......++.
T Consensus 329 p~t~ard~~ 337 (369)
T 3bt7_A 329 PETLCKNLE 337 (369)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 443333433
No 183
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=99.40 E-value=1.9e-12 Score=106.54 Aligned_cols=111 Identities=12% Similarity=0.156 Sum_probs=84.9
Q ss_pred CCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++.+|||+|||+|..++.+++. + ..+++++|+++.+++.|++++...++. +++.+...+.... +..+..
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~gda~~~-------l~~l~~- 140 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE-HKINFIESDAMLA-------LDNLLQ- 140 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHH-------HHHHHH-
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHH-------HHHHHh-
Confidence 5789999999999999998874 4 578999999999999999999888874 4566665543211 011100
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.-...++||+|+++.....+..+++.+.++|+|||++++...
T Consensus 141 -------~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 141 -------GQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp -------STTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred -------ccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 000146899999998877888999999999999999998643
No 184
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=99.40 E-value=2.2e-12 Score=110.82 Aligned_cols=142 Identities=13% Similarity=0.142 Sum_probs=93.2
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCcceEEEecCCCCCccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
..+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++... ++...++.+...++..+ +
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~-----------l 175 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF-----------L 175 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH-----------H
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH-----------H
Confidence 35689999999999999998876 5688999999999999999987643 33223455555443211 0
Q ss_pred cccccccccCCCCCCceeEEEeccchh-----H-H-HHHHHHHHHhccCCeEEEEeccCC----CcHHHHHHHHHhhhhh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLN-----P-L-LQLADHIVSYAKPGAVVGISGILS----EQLPHIINRYSEFLED 202 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~-~-~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~~~~ 202 (225)
. . ..++||+|+++.+.. . + ..+++.+.+.|+|||++++..... .....+.+.+++.|..
T Consensus 176 ~--------~--~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~ 245 (314)
T 2b2c_A 176 K--------N--HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPA 245 (314)
T ss_dssp H--------H--CTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSE
T ss_pred H--------h--cCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCc
Confidence 0 0 356899999987432 1 2 678999999999999999964211 1233445555555543
Q ss_pred hcc-------cccCCceEEEeeee
Q 041459 203 ILL-------SEMDDWTCVSGTKK 219 (225)
Q Consensus 203 ~~~-------~~~~~w~~~~~~k~ 219 (225)
... ...|.|.-+.+.|+
T Consensus 246 v~~~~~~iP~~~~g~~g~~~ask~ 269 (314)
T 2b2c_A 246 VTYAQSIVSTYPSGSMGYLICAKN 269 (314)
T ss_dssp EEEEEEECTTSGGGEEEEEEEESS
T ss_pred ceEEEEEecCcCCCceEEEEEeCC
Confidence 322 22366776666665
No 185
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.39 E-value=1.6e-12 Score=104.51 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=78.2
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
..++.+|||+|||+|.++..+++.. ..+++++|+++.+++.|+++....++.+ +.+...+....
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~------------ 140 (215)
T 2yxe_A 75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN--VIVIVGDGTLG------------ 140 (215)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT--EEEEESCGGGC------------
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--eEEEECCcccC------------
Confidence 4568899999999999999988753 2689999999999999999988777653 55554443111
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
......||+|+++.++++.. +.+.+.|||||.+++...
T Consensus 141 ----------~~~~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 141 ----------YEPLAPYDRIYTTAAGPKIP---EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp ----------CGGGCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEES
T ss_pred ----------CCCCCCeeEEEECCchHHHH---HHHHHHcCCCcEEEEEEC
Confidence 00246799999988776543 478899999999998754
No 186
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=99.39 E-value=1.8e-12 Score=105.29 Aligned_cols=111 Identities=17% Similarity=0.239 Sum_probs=84.4
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++..+++. .++.+...+... ....+..
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~-------~~~~~~~ 139 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE-HKIDLRLKPALE-------TLDELLA 139 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT-TTEEEEESCHHH-------HHHHHHH
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-CeEEEEEcCHHH-------HHHHHHh
Confidence 36789999999999999998874 3 578999999999999999999888764 345555543211 1001100
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
. ...++||+|+++.+...+..+++.+.++|+|||++++.+.
T Consensus 140 --------~-~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 140 --------A-GEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp --------T-TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred --------c-CCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 0 0016899999998888888999999999999999999644
No 187
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.39 E-value=7.1e-12 Score=111.79 Aligned_cols=111 Identities=23% Similarity=0.293 Sum_probs=80.7
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHH-------HHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSA-------HQNAALNNIGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
+.++.+|||+|||+|.+++.+++. +..+++|+|+++.+++.| ++++...++...++.+...+.......
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~--- 316 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR--- 316 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH---
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccc---
Confidence 457889999999999999998874 777899999999999999 888887774323455554432110000
Q ss_pred cccccccccccccccCCCCCCceeEEEeccch--hHHHHHHHHHHHhccCCeEEEEecc
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
... ....||+|+++..+ ......+..+.+.|||||.+++.+.
T Consensus 317 -~~~--------------~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 317 -VAE--------------LIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp -HHH--------------HGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred -ccc--------------ccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeec
Confidence 000 13579999997443 4466678999999999999999743
No 188
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=99.39 E-value=1.1e-12 Score=106.39 Aligned_cols=117 Identities=17% Similarity=0.169 Sum_probs=82.4
Q ss_pred HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcC------CCeEEEEeCCHHHHHHHHHHHHhcCC---CCCcceEEEec
Q 041459 47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG------AAMSVGVDIDPQAIKSAHQNAALNNI---GPKKMKLHLVP 117 (225)
Q Consensus 47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~------~~~v~~vDi~~~~l~~a~~~~~~~~~---~~~~~~~~~~~ 117 (225)
.+++.+...++++.+|||+|||+|.++..+++.. ..+++++|+++.+++.|++++..+++ ....+.+...+
T Consensus 69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 148 (227)
T 2pbf_A 69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKN 148 (227)
T ss_dssp HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECC
T ss_pred HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECC
Confidence 3444443345678999999999999999988753 35899999999999999999887762 01235555544
Q ss_pred CCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 118 DRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
...... . .. ....+||+|+++.+.+. +++.+.+.|||||.+++...
T Consensus 149 ~~~~~~---~--~~-------------~~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 149 IYQVNE---E--EK-------------KELGLFDAIHVGASASE---LPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp GGGCCH---H--HH-------------HHHCCEEEEEECSBBSS---CCHHHHHHEEEEEEEEEEEE
T ss_pred hHhccc---c--cC-------------ccCCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEEEc
Confidence 322100 0 00 03467999999887764 35778899999999998644
No 189
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.38 E-value=1.1e-12 Score=101.21 Aligned_cols=121 Identities=13% Similarity=0.130 Sum_probs=84.5
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccc-c
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDG-I 132 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 132 (225)
.+++.+|||+|||+|.++..+++. + ..+++++|+++ +++. ..+.+...+....+ ..+.+.. +
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~------------~~~~~~~~d~~~~~--~~~~~~~~~ 84 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI------------VGVDFLQGDFRDEL--VMKALLERV 84 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC------------TTEEEEESCTTSHH--HHHHHHHHH
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc------------CcEEEEEcccccch--hhhhhhccC
Confidence 457889999999999999998875 4 47899999999 6532 22445544443221 0000000 1
Q ss_pred ccccccccccCCCCCCceeEEEeccchhH--------------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNP--------------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
+.++||+|+++.+++. ...++..+.++|+|||.++++.+.......+.+.+..
T Consensus 85 -------------~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~ 151 (180)
T 1ej0_A 85 -------------GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS 151 (180)
T ss_dssp -------------TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH
T ss_pred -------------CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH
Confidence 4568999999877532 1578999999999999999988877777777777776
Q ss_pred hhhhhc
Q 041459 199 FLEDIL 204 (225)
Q Consensus 199 ~~~~~~ 204 (225)
.+..+.
T Consensus 152 ~~~~~~ 157 (180)
T 1ej0_A 152 LFTKVK 157 (180)
T ss_dssp HEEEEE
T ss_pred hhhhEE
Confidence 654433
No 190
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.38 E-value=6.4e-12 Score=100.23 Aligned_cols=124 Identities=13% Similarity=0.193 Sum_probs=83.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++++.+|||+|||+|.++..+++. ..+|+|+|+++.. .. ..+.+...+...... ...+...+..
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~~--~~v~~~~~D~~~~~~--~~~~~~~~~~ 86 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------EI--AGVRFIRCDIFKETI--FDDIDRALRE 86 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------CC--TTCEEEECCTTSSSH--HHHHHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------cC--CCeEEEEccccCHHH--HHHHHHHhhc
Confidence 567899999999999999999888 6789999999841 12 235555555443210 0000000000
Q ss_pred cccccccCCCCCCceeEEEeccch--------hH------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhhh
Q 041459 136 LSSHEIRGISETEKYDVVIANILL--------NP------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLE 201 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~--------~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 201 (225)
. ..++||+|+++++. ++ ...++..+.++|||||.+++..+.......+...++..|.
T Consensus 87 ~---------~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~F~ 157 (191)
T 3dou_A 87 E---------GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFS 157 (191)
T ss_dssp H---------TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGGEE
T ss_pred c---------cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHhcC
Confidence 0 01489999998643 11 2356788899999999999988877777788888877665
Q ss_pred hhc
Q 041459 202 DIL 204 (225)
Q Consensus 202 ~~~ 204 (225)
.+.
T Consensus 158 ~v~ 160 (191)
T 3dou_A 158 SYK 160 (191)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 191
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.38 E-value=2.4e-12 Score=105.40 Aligned_cols=103 Identities=18% Similarity=0.172 Sum_probs=77.9
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++....+++++|+++.+++.|++++...++.+ +.+...+.. .+
T Consensus 89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--v~~~~~d~~-~~------------- 152 (235)
T 1jg1_A 89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN--VHVILGDGS-KG------------- 152 (235)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS--EEEEESCGG-GC-------------
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC--cEEEECCcc-cC-------------
Confidence 45688999999999999999887532789999999999999999998877653 555554431 10
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
+.....||+|+++.+++.+. +.+.+.|||||.++++...
T Consensus 153 --------~~~~~~fD~Ii~~~~~~~~~---~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 153 --------FPPKAPYDVIIVTAGAPKIP---EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp --------CGGGCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEEECS
T ss_pred --------CCCCCCccEEEECCcHHHHH---HHHHHhcCCCcEEEEEEec
Confidence 00234599999987765433 3678899999999997553
No 192
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=99.38 E-value=2.1e-12 Score=105.81 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=84.0
Q ss_pred CCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++. .++.+...+... ....+.
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~-------~l~~l~-- 141 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA-EKISLRLGPALA-------TLEQLT-- 141 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHHH-------HHHHHH--
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHH-------HHHHHH--
Confidence 6789999999999999998874 3 468999999999999999999887764 345565543211 001100
Q ss_pred cccccccCCCCC--CceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 136 LSSHEIRGISET--EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 136 ~~~~~~~~~~~~--~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
... ++||+|+++.....+..+++.+.++|+|||++++....
T Consensus 142 ---------~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 142 ---------QGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp ---------TSSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred ---------hcCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 012 68999999988778889999999999999999996443
No 193
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.38 E-value=1.7e-12 Score=111.26 Aligned_cols=103 Identities=18% Similarity=0.205 Sum_probs=80.5
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
.+++.+|||+|||+|.++..+++. + ..+++|+|+++.+++.|++++..+++.+ +.+...+.....
T Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~--v~~~~~d~~~~~----------- 139 (317)
T 1dl5_A 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN--VIFVCGDGYYGV----------- 139 (317)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS--EEEEESCGGGCC-----------
T ss_pred CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC--eEEEECChhhcc-----------
Confidence 457899999999999999998875 3 3579999999999999999998888753 556555443210
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
...++||+|+++.++++.. +.+.+.|||||.+++++..
T Consensus 140 -----------~~~~~fD~Iv~~~~~~~~~---~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 140 -----------PEFSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp -----------GGGCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEEBCB
T ss_pred -----------ccCCCeEEEEEcCCHHHHH---HHHHHhcCCCcEEEEEECC
Confidence 0246799999998876544 5678899999999997543
No 194
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.38 E-value=3.3e-12 Score=109.61 Aligned_cols=143 Identities=10% Similarity=0.147 Sum_probs=97.4
Q ss_pred CCchHHHHHHHHHh---hccCCC--cEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEE
Q 041459 41 EHATTKLCLLLLQS---LIKGGE--LFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLH 114 (225)
Q Consensus 41 ~~~~~~~~~~~L~~---~~~~~~--~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~ 114 (225)
...+.+.+...+.. ....++ +|||+|||+|.++..+++ .+..+++++|+++.+++.|++++.... ..++++.
T Consensus 67 e~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~--~~rv~v~ 144 (317)
T 3gjy_A 67 EFEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR--APRVKIR 144 (317)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC--TTTEEEE
T ss_pred hhHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC--CCceEEE
Confidence 45566666665543 122334 999999999999999887 566689999999999999999875432 2356666
Q ss_pred EecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-----H--HHHHHHHHHHhccCCeEEEEeccCCC
Q 041459 115 LVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----P--LLQLADHIVSYAKPGAVVGISGILSE 187 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 187 (225)
..++..+ +... ..++||+|+++.... + ..++++.+.+.|+|||++++......
T Consensus 145 ~~Da~~~-------l~~~-------------~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~ 204 (317)
T 3gjy_A 145 VDDARMV-------AESF-------------TPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHS 204 (317)
T ss_dssp ESCHHHH-------HHTC-------------CTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECT
T ss_pred ECcHHHH-------Hhhc-------------cCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 6554221 0000 357899999975322 1 26789999999999999998654222
Q ss_pred c---HHHHHHHHHhhhhhhcc
Q 041459 188 Q---LPHIINRYSEFLEDILL 205 (225)
Q Consensus 188 ~---~~~~~~~~~~~~~~~~~ 205 (225)
. ...+...+++.|..+..
T Consensus 205 ~~~~~~~~~~tL~~vF~~v~~ 225 (317)
T 3gjy_A 205 DLRGAKSELAGMMEVFEHVAV 225 (317)
T ss_dssp TCHHHHHHHHHHHHHCSEEEE
T ss_pred chHHHHHHHHHHHHHCCceEE
Confidence 2 34566666666654443
No 195
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.37 E-value=9.7e-13 Score=108.78 Aligned_cols=83 Identities=22% Similarity=0.239 Sum_probs=62.5
Q ss_pred CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC-CCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT-FPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 135 (225)
++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+++. +++.+...+... +. .
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-------~----- 131 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS-DLIKVVKVPQKTLLM-------D----- 131 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTCSST-------T-----
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCC-ccEEEEEcchhhhhh-------h-----
Confidence 4679999999999999887764 4578999999999999999999988875 346666665432 10 0
Q ss_pred cccccccCCCC--CCceeEEEeccchh
Q 041459 136 LSSHEIRGISE--TEKYDVVIANILLN 160 (225)
Q Consensus 136 ~~~~~~~~~~~--~~~~DvIi~~~~~~ 160 (225)
.+.. +.+||+|++|+|+.
T Consensus 132 -------~~~~~~~~~fD~i~~npp~~ 151 (254)
T 2h00_A 132 -------ALKEESEIIYDFCMCNPPFF 151 (254)
T ss_dssp -------TSTTCCSCCBSEEEECCCCC
T ss_pred -------hhhcccCCcccEEEECCCCc
Confidence 0001 25799999998865
No 196
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=99.37 E-value=8.3e-12 Score=99.43 Aligned_cols=92 Identities=28% Similarity=0.425 Sum_probs=69.1
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++. .+.+...+...+
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-------~~~~~~~d~~~~--------------- 107 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-------GVNFMVADVSEI--------------- 107 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-------TSEEEECCGGGC---------------
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-------CCEEEECcHHHC---------------
Confidence 3678999999999999999988877789999999999999998865 244555443222
Q ss_pred ccccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEEEec
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~ 183 (225)
.++||+|++|+|+++. ..++..+.+.+ |.+++.+
T Consensus 108 ----------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~ 146 (200)
T 1ne2_A 108 ----------SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIG 146 (200)
T ss_dssp ----------CCCEEEEEECCCC-------CHHHHHHHHHHE---EEEEEEE
T ss_pred ----------CCCeeEEEECCCchhccCchhHHHHHHHHHhc---CcEEEEE
Confidence 2679999999998764 35677888887 4555544
No 197
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=99.37 E-value=1.5e-12 Score=105.57 Aligned_cols=113 Identities=21% Similarity=0.299 Sum_probs=81.5
Q ss_pred HHHHHHHhhccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC---CCCcceEEEecCCCC
Q 041459 47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNI---GPKKMKLHLVPDRTF 121 (225)
Q Consensus 47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~---~~~~~~~~~~~~~~~ 121 (225)
.+++.+...++++.+|||+|||+|.++..+++. + ..+++++|+++.+++.|++++..++. ....+.+...+....
T Consensus 66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (226)
T 1i1n_A 66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 145 (226)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence 344444433567899999999999999998875 3 35899999999999999999887653 012355555443211
Q ss_pred CccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
. .....||+|+++.+... +++.+.+.|||||.++++..
T Consensus 146 ~----------------------~~~~~fD~i~~~~~~~~---~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 146 Y----------------------AEEAPYDAIHVGAAAPV---VPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp C----------------------GGGCCEEEEEECSBBSS---CCHHHHHTEEEEEEEEEEES
T ss_pred c----------------------ccCCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEEEe
Confidence 0 03467999999877653 34678899999999998643
No 198
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.36 E-value=2.7e-11 Score=103.84 Aligned_cols=104 Identities=20% Similarity=0.217 Sum_probs=81.2
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|.++..+++. +..+++++|++ .+++.|++++...++. +++.+...+....+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~------------- 228 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVA-SRYHTIAGSAFEVD------------- 228 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCG-GGEEEEESCTTTSC-------------
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCC-cceEEEecccccCC-------------
Confidence 56789999999999999988764 56789999999 9999999998877764 34666655543321
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
....||+|++...+++ ...+++++.+.|+|||.+++.+..
T Consensus 229 ----------~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 273 (335)
T 2r3s_A 229 ----------YGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFI 273 (335)
T ss_dssp ----------CCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ----------CCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence 2334999999777654 357899999999999998886554
No 199
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.36 E-value=5.2e-12 Score=105.07 Aligned_cols=115 Identities=19% Similarity=0.239 Sum_probs=83.1
Q ss_pred HHHHHHHHhhc-cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCc
Q 041459 46 KLCLLLLQSLI-KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPA 123 (225)
Q Consensus 46 ~~~~~~L~~~~-~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (225)
..+...+.... .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|+++.. .+.+...+...++.
T Consensus 72 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~d~~~~~~ 144 (269)
T 1p91_A 72 DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP-------QVTFCVASSHRLPF 144 (269)
T ss_dssp HHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT-------TSEEEECCTTSCSB
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC-------CcEEEEcchhhCCC
Confidence 33444444333 46889999999999999998875 45689999999999999987641 24455555443321
Q ss_pred cccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHH
Q 041459 124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHII 193 (225)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 193 (225)
..++||+|+++.... .+.++.++|||||.+++.........++.
T Consensus 145 ----------------------~~~~fD~v~~~~~~~----~l~~~~~~L~pgG~l~~~~~~~~~~~~~~ 188 (269)
T 1p91_A 145 ----------------------SDTSMDAIIRIYAPC----KAEELARVVKPGGWVITATPGPRHLMELK 188 (269)
T ss_dssp ----------------------CTTCEEEEEEESCCC----CHHHHHHHEEEEEEEEEEEECTTTTHHHH
T ss_pred ----------------------CCCceeEEEEeCChh----hHHHHHHhcCCCcEEEEEEcCHHHHHHHH
Confidence 456899999976543 46788999999999999877665554443
No 200
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.35 E-value=2.6e-11 Score=104.89 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=79.9
Q ss_pred CCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 59 GELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
+.+|||+|||+|.++..+++ .+..+++++|+ +.+++.|+++....++. +++.+...+....+. .
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~--------~----- 244 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLG-GRVEFFEKNLLDARN--------F----- 244 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCG-GGEEEEECCTTCGGG--------G-----
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCC-CceEEEeCCcccCcc--------c-----
Confidence 78999999999999998776 46678999999 88999999998877764 346665554432210 0
Q ss_pred cccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459 138 SHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
....||+|++...+++ ...+++++.+.|||||.+++.+.
T Consensus 245 --------~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (352)
T 3mcz_A 245 --------EGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTM 288 (352)
T ss_dssp --------TTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred --------CCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 2346999999877764 36789999999999999998653
No 201
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.35 E-value=9.4e-12 Score=109.06 Aligned_cols=103 Identities=15% Similarity=0.097 Sum_probs=80.5
Q ss_pred CCCcEEEEcccccHHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC-CCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT-FPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 135 (225)
++.+|||+| |+|.+++.+++.+. .+++++|+++.+++.|++++..+++. ++.+...+... ++.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~--~v~~~~~D~~~~l~~------------ 236 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE--DIEIFTFDLRKPLPD------------ 236 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC--CEEEECCCTTSCCCT------------
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEEChhhhhchh------------
Confidence 578999999 99999999887754 78999999999999999999988864 36666655543 210
Q ss_pred cccccccCCCCCCceeEEEeccchhH--HHHHHHHHHHhccCCe-EEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP--LLQLADHIVSYAKPGA-VVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~~LkpgG-~l~~~~~ 184 (225)
...++||+|++|+|+.. ...++..+.+.||||| .+++++.
T Consensus 237 ---------~~~~~fD~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 237 ---------YALHKFDTFITDPPETLEAIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp ---------TTSSCBSEEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred ---------hccCCccEEEECCCCchHHHHHHHHHHHHHcccCCeEEEEEEe
Confidence 01357999999998743 4678899999999999 4455544
No 202
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.34 E-value=9.9e-12 Score=100.11 Aligned_cols=102 Identities=25% Similarity=0.277 Sum_probs=77.3
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++.. .+...+...... .+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~~---------~~~~~d~~~~~~-------~~---- 89 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKLD---------HVVLGDIETMDM-------PY---- 89 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTSS---------EEEESCTTTCCC-------CS----
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCC---------cEEEcchhhcCC-------CC----
Confidence 467899999999999999988875 789999999999999886531 233433322100 00
Q ss_pred ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQ 188 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~ 188 (225)
++++||+|+++..+++ ...++..+.+.|+|||.++++......
T Consensus 90 ---------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 135 (230)
T 3cc8_A 90 ---------EEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSH 135 (230)
T ss_dssp ---------CTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTS
T ss_pred ---------CCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcch
Confidence 4578999999887755 467899999999999999997554333
No 203
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=99.34 E-value=4.9e-12 Score=105.91 Aligned_cols=134 Identities=10% Similarity=-0.048 Sum_probs=90.5
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh--cCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.+.+|||+|||+|.++..+++.+ .+++++|+++.+++.|++++.. .++...++.+...++..+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~-------------- 136 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-------------- 136 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC--------------
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH--------------
Confidence 46899999999999999888776 8999999999999999887643 122223456665544322
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCC-C---cHHHHHHHHHhhhhhhcccc----
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS-E---QLPHIINRYSEFLEDILLSE---- 207 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~---- 207 (225)
. ++||+|+++..-. ..+++.+.+.|||||++++..... . ....+.+.++..|.......
T Consensus 137 ----------~-~~fD~Ii~d~~dp--~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~~~vP 203 (262)
T 2cmg_A 137 ----------I-KKYDLIFCLQEPD--IHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFVAPLR 203 (262)
T ss_dssp ----------C-CCEEEEEESSCCC--HHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEEECCTTC
T ss_pred ----------H-hhCCEEEECCCCh--HHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEEEEEccC
Confidence 2 6799999985432 247889999999999999852211 1 23334444444443332221
Q ss_pred -cCCceEEEeeee
Q 041459 208 -MDDWTCVSGTKK 219 (225)
Q Consensus 208 -~~~w~~~~~~k~ 219 (225)
.|.|.-+.++|+
T Consensus 204 ~~g~~~~~~as~~ 216 (262)
T 2cmg_A 204 ILSNKGYIYASFK 216 (262)
T ss_dssp TTCCEEEEEEESS
T ss_pred CCcccEEEEeeCC
Confidence 467776666664
No 204
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.34 E-value=3.5e-13 Score=110.90 Aligned_cols=100 Identities=12% Similarity=0.145 Sum_probs=66.6
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++.+|||+|||||.++..+++.+..+++|+|+++.|++.|+++....... ....+.......+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~-~~~~~~~~~~~~~---------------- 99 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVM-EQFNFRNAVLADF---------------- 99 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEE-CSCCGGGCCGGGC----------------
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcccccc-ccceEEEeCHhHc----------------
Confidence 46799999999999999999888779999999999999987654321100 0000000000000
Q ss_pred cccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 138 SHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
....+|.+.++..+..+..++..+.++|||||.+++.
T Consensus 100 --------~~~~~d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 100 --------EQGRPSFTSIDVSFISLDLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp --------CSCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred --------CcCCCCEEEEEEEhhhHHHHHHHHHHhccCCCEEEEE
Confidence 1112344444444444577899999999999999885
No 205
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.34 E-value=1.1e-11 Score=98.53 Aligned_cols=132 Identities=13% Similarity=0.180 Sum_probs=79.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-C--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-G--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
++++.+|||+|||+|.++..+++. + ..+++|+|+++.. .. ..+.+...+.......... ...+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~--~~v~~~~~d~~~~~~~~~~-~~~~ 85 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI--PNVYFIQGEIGKDNMNNIK-NINY 85 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC--TTCEEEECCTTTTSSCCC------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC--CCceEEEccccchhhhhhc-cccc
Confidence 457889999999999999998864 4 4789999999931 11 2244555444332100000 0000
Q ss_pred cccccc----ccccCCCCCCceeEEEeccchhH--------H------HHHHHHHHHhccCCeEEEEeccCCCcHHHHHH
Q 041459 133 VEDLSS----HEIRGISETEKYDVVIANILLNP--------L------LQLADHIVSYAKPGAVVGISGILSEQLPHIIN 194 (225)
Q Consensus 133 ~~~~~~----~~~~~~~~~~~~DvIi~~~~~~~--------~------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 194 (225)
++.... ..+....+..+||+|+++..++. . ..++..+.++|||||.+++..+......++..
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~ 165 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKT 165 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHH
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHH
Confidence 000000 00000003568999999865321 1 23688899999999999997777667777777
Q ss_pred HHHhhhh
Q 041459 195 RYSEFLE 201 (225)
Q Consensus 195 ~~~~~~~ 201 (225)
.+...|.
T Consensus 166 ~l~~~f~ 172 (201)
T 2plw_A 166 YLKGMFQ 172 (201)
T ss_dssp HHHTTEE
T ss_pred HHHHHHh
Confidence 7766543
No 206
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.34 E-value=3.1e-11 Score=105.12 Aligned_cols=102 Identities=17% Similarity=0.083 Sum_probs=80.2
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++. +++.+...+....
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------------- 244 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA-DRVTVAEGDFFKP-------------- 244 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTTSC--------------
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCC-CceEEEeCCCCCc--------------
Confidence 35789999999999999998874 4668999999 99999999999877765 3466665543221
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
....||+|+++..+++ ...+++++.+.|||||.+++.+.
T Consensus 245 ----------~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 245 ----------LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp ----------CSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ----------CCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 1234999999887754 24789999999999999998766
No 207
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.34 E-value=3.7e-12 Score=102.74 Aligned_cols=102 Identities=16% Similarity=0.232 Sum_probs=72.9
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHH----HhcCCCCCcceEEEecCCCCCcccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNA----ALNNIGPKKMKLHLVPDRTFPASMNERVD 130 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
.+++.+|||+|||+|.++..+++. +..+++|+|+++.+++.+.+++ ...++. ++.+...+...++.
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~--~v~~~~~d~~~l~~------- 95 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLP--NLLYLWATAERLPP------- 95 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT--TEEEEECCSTTCCS-------
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC--ceEEEecchhhCCC-------
Confidence 446889999999999999998875 4678999999999888643333 233332 46666666655432
Q ss_pred ccccccccccccCCCCCCceeEEEeccchhH-----H---HHHHHHHHHhccCCeEEEEe
Q 041459 131 GIVEDLSSHEIRGISETEKYDVVIANILLNP-----L---LQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~---~~~l~~~~~~LkpgG~l~~~ 182 (225)
..+. |.+++..+... . ..++.++.++|||||.++++
T Consensus 96 ---------------~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 96 ---------------LSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp ---------------CCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred ---------------CCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 2334 66665443322 2 67899999999999999985
No 208
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=99.33 E-value=6.2e-12 Score=108.91 Aligned_cols=116 Identities=20% Similarity=0.168 Sum_probs=85.2
Q ss_pred CCCcEEEEcccccHHHHHHHhc-CC-----CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-GA-----AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDG 131 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~~-----~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (225)
++.+|||+|||+|.++..+++. +. .+++|+|+++.+++.|+.++..+++. +.+...+....
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~---~~i~~~D~l~~---------- 196 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK---MTLLHQDGLAN---------- 196 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC---CEEEESCTTSC----------
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCC---ceEEECCCCCc----------
Confidence 4679999999999999987764 21 67999999999999999999887763 44544433211
Q ss_pred cccccccccccCCCCCCceeEEEeccchhH---------------------HHHHHHHHHHhccCCeEEEEec----cCC
Q 041459 132 IVEDLSSHEIRGISETEKYDVVIANILLNP---------------------LLQLADHIVSYAKPGAVVGISG----ILS 186 (225)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~----~~~ 186 (225)
....+||+|++|+|+.. ...++..+.+.|||||.+++.. +..
T Consensus 197 -------------~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~ 263 (344)
T 2f8l_A 197 -------------LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGT 263 (344)
T ss_dssp -------------CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGS
T ss_pred -------------cccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCC
Confidence 03468999999999532 1257899999999999988864 233
Q ss_pred CcHHHHHHHHHhh
Q 041459 187 EQLPHIINRYSEF 199 (225)
Q Consensus 187 ~~~~~~~~~~~~~ 199 (225)
.....+++.+.+.
T Consensus 264 ~~~~~ir~~l~~~ 276 (344)
T 2f8l_A 264 SDFAKVDKFIKKN 276 (344)
T ss_dssp TTHHHHHHHHHHH
T ss_pred chHHHHHHHHHhC
Confidence 4556666666553
No 209
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.33 E-value=5.6e-12 Score=101.38 Aligned_cols=101 Identities=26% Similarity=0.381 Sum_probs=73.8
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++ .. +.+...+...+ ...
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~-----~~~~~~~~~~~-------~~~----- 109 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA---GA-----GEVHLASYAQL-------AEA----- 109 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT---CS-----SCEEECCHHHH-------HTT-----
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh---cc-----cccchhhHHhh-------ccc-----
Confidence 3678999999999999999988854 799999999999999876 11 22333222111 000
Q ss_pred ccccccCCCCCCceeEEEeccchh--HHHHHHHHHHHhccCCeEEEEecc
Q 041459 137 SSHEIRGISETEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
......+||+|+++..++ ....++..+.+.|||||.+++++.
T Consensus 110 ------~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 110 ------KVPVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp ------CSCCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ------ccccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEec
Confidence 001345699999987765 346789999999999999999754
No 210
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.33 E-value=2.7e-12 Score=108.49 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=74.4
Q ss_pred CCCcEEEEcccccHHHHHHH-----hcCCCe--EEEEeCCHHHHHHHHHHHHhc-CCCCCcceEEEecCCCCCccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAI-----KFGAAM--SVGVDIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFPASMNERV 129 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~-----~~~~~~--v~~vDi~~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (225)
++.+|||+|||+|.++..++ +.+... ++|+|.|+.|++.|++++... ++. .+.+.+...... +..
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~--~v~~~~~~~~~~-----~~~ 124 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE--NVKFAWHKETSS-----EYQ 124 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCT--TEEEEEECSCHH-----HHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCC--cceEEEEecchh-----hhh
Confidence 46799999999998765322 223443 499999999999999887643 333 244443333211 000
Q ss_pred cccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459 130 DGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
..+. +-.++++||+|+++..+++ +...+.++.++|||||.+++...
T Consensus 125 ~~~~---------~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~ 173 (292)
T 2aot_A 125 SRML---------EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV 173 (292)
T ss_dssp HHHH---------TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhc---------cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 0000 0003678999999988876 56789999999999999998644
No 211
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.33 E-value=3.3e-11 Score=104.67 Aligned_cols=102 Identities=21% Similarity=0.219 Sum_probs=80.2
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++. +++.+...+....
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------------- 252 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-DRMRGIAVDIYKE-------------- 252 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCT-TTEEEEECCTTTS--------------
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCC-CCEEEEeCccccC--------------
Confidence 46789999999999999988764 5678999999 99999999999877765 3466666554332
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+...+|+|++...+++ ...+++++.+.|||||.+++.+.
T Consensus 253 ----------~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 253 ----------SYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp ----------CCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred ----------CCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 1223499999877754 46789999999999999988653
No 212
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=99.33 E-value=1.3e-11 Score=110.88 Aligned_cols=121 Identities=18% Similarity=0.119 Sum_probs=87.2
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|||+|||+|..+..+++. +. .+++++|+++.+++.+++++...++.+ +.+...+...++. .+
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~--v~~~~~D~~~~~~-------~~- 326 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKI--VKPLVKDARKAPE-------II- 326 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCS--EEEECSCTTCCSS-------SS-
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc--EEEEEcChhhcch-------hh-
Confidence 457889999999999999998874 33 789999999999999999999888753 5555555443310 00
Q ss_pred cccccccccCCCCCCceeEEEeccchhH-------------------------HHHHHHHHHHhccCCeEEEEeccC--C
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP-------------------------LLQLADHIVSYAKPGAVVGISGIL--S 186 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~~--~ 186 (225)
..+.||+|++++|... ...++..+.++|||||.+++++.. .
T Consensus 327 ------------~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~ 394 (450)
T 2yxl_A 327 ------------GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK 394 (450)
T ss_dssp ------------CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred ------------ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 2367999999776411 156799999999999999886432 2
Q ss_pred C-cHHHHHHHHHh
Q 041459 187 E-QLPHIINRYSE 198 (225)
Q Consensus 187 ~-~~~~~~~~~~~ 198 (225)
. +...+...+..
T Consensus 395 ~ene~~v~~~l~~ 407 (450)
T 2yxl_A 395 EENEKNIRWFLNV 407 (450)
T ss_dssp GGTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHh
Confidence 2 33344444544
No 213
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.33 E-value=5.6e-11 Score=103.84 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=80.9
Q ss_pred cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|.++..+++ .+..+++++|+ +.+++.|++++...++. +++.+...+....
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~-------------- 264 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLA-DRCEILPGDFFET-------------- 264 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTTTC--------------
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcC-CceEEeccCCCCC--------------
Confidence 3568999999999999998876 46678999999 99999999998877765 4566665544311
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
....||+|++...+++ ...+++++.+.|||||.+++.+..
T Consensus 265 ----------~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~ 309 (369)
T 3gwz_A 265 ----------IPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNL 309 (369)
T ss_dssp ----------CCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred ----------CCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 1227999999877754 236899999999999999986553
No 214
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.33 E-value=4.9e-11 Score=102.45 Aligned_cols=102 Identities=15% Similarity=0.086 Sum_probs=80.5
Q ss_pred CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
++.+|||+|||+|.++..+++ .+..+++++|+ +.+++.|++++...++. +++.+...+....
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~--------------- 231 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLS-GRAQVVVGSFFDP--------------- 231 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTTSC---------------
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcC-cCeEEecCCCCCC---------------
Confidence 457999999999999998776 56678999999 99999999998877765 3566665544211
Q ss_pred ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
.+..||+|++...+++ ...+++++++.|||||.+++.+..
T Consensus 232 ---------~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 276 (332)
T 3i53_A 232 ---------LPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAV 276 (332)
T ss_dssp ---------CCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred ---------CCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence 1227999999877754 367899999999999999987654
No 215
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=99.32 E-value=1.9e-11 Score=110.51 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=80.6
Q ss_pred CCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++.+|||+|||+|..+..+++. +..+++|+|+++.+++.+++|+..+++.+ +.+...+...++ ..
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~n--v~~~~~D~~~~~--------~~--- 183 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN--VALTHFDGRVFG--------AA--- 183 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCS--EEEECCCSTTHH--------HH---
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc--EEEEeCCHHHhh--------hh---
Confidence 7899999999999999998874 34789999999999999999999888753 555555543321 00
Q ss_pred cccccccCCCCCCceeEEEeccchh-------------------------HHHHHHHHHHHhccCCeEEEEec
Q 041459 136 LSSHEIRGISETEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~-------------------------~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
..+.||+|++++|.. ....++..+.++|||||++++++
T Consensus 184 ----------~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT 246 (479)
T 2frx_A 184 ----------VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST 246 (479)
T ss_dssp ----------STTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----------ccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 246799999987641 02467899999999999998863
No 216
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.32 E-value=4.8e-11 Score=104.02 Aligned_cols=105 Identities=14% Similarity=0.119 Sum_probs=80.1
Q ss_pred cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|.++..+++ .+..+++++|+ +.+++.|++++...++. +++.+...+...... .
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-------~---- 244 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGS-ERIHGHGANLLDRDV-------P---- 244 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTG-GGEEEEECCCCSSSC-------C----
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcc-cceEEEEccccccCC-------C----
Confidence 3578999999999999998876 46678999999 99999999998776654 346666554432100 0
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
-++.||+|++...+++ ...+++++.+.|||||.+++.+.
T Consensus 245 ----------~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 245 ----------FPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp ----------CCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ----------CCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 1267999999777653 35689999999999999988654
No 217
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=99.32 E-value=3.1e-12 Score=114.86 Aligned_cols=104 Identities=14% Similarity=0.081 Sum_probs=80.1
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++|+..+++.+ +.+...+...+ ...
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n--v~v~~~Da~~l--------~~~- 171 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN--AIVTNHAPAEL--------VPH- 171 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS--EEEECCCHHHH--------HHH-
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc--eEEEeCCHHHh--------hhh-
Confidence 457899999999999999998864 45789999999999999999999998764 44444333211 000
Q ss_pred cccccccccCCCCCCceeEEEeccchh-------------------------HHHHHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-------------------------~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
..+.||+|++++|.. ....++..+.++|||||+++++
T Consensus 172 ------------~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 233 (456)
T 3m4x_A 172 ------------FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYS 233 (456)
T ss_dssp ------------HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ------------ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 246899999998731 1236799999999999998875
No 218
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=99.31 E-value=4.4e-12 Score=111.50 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=79.4
Q ss_pred CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc---------------CCCCCcceEEEecCCCC
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN---------------NIGPKKMKLHLVPDRTF 121 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~---------------~~~~~~~~~~~~~~~~~ 121 (225)
++.+|||+|||+|.+++.+++. +..+++++|+++.+++.+++|+..+ ++.+ +.+...|...+
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~--i~v~~~Da~~~ 124 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT--IVINHDDANRL 124 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE--EEEEESCHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc--eEEEcCcHHHH
Confidence 6899999999999999998875 6678999999999999999999988 6542 44544433211
Q ss_pred CccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.. . ....||+|+++++. ....+++.+.+.||+||.+++++.
T Consensus 125 -------~~------------~--~~~~fD~I~lDP~~-~~~~~l~~a~~~lk~gG~l~vt~t 165 (378)
T 2dul_A 125 -------MA------------E--RHRYFHFIDLDPFG-SPMEFLDTALRSAKRRGILGVTAT 165 (378)
T ss_dssp -------HH------------H--STTCEEEEEECCSS-CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred -------HH------------h--ccCCCCEEEeCCCC-CHHHHHHHHHHhcCCCCEEEEEee
Confidence 00 0 13579999988753 346778889999999999998763
No 219
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=99.31 E-value=3.6e-12 Score=114.70 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=79.5
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|||+|||+|..+..+++. +..+|+|+|+++.+++.+++|+..+++. +.+...+...+ ...
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~---v~~~~~Da~~l--------~~~- 166 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP---LAVTQAPPRAL--------AEA- 166 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC---CEEECSCHHHH--------HHH-
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe---EEEEECCHHHh--------hhh-
Confidence 457899999999999999998864 3468999999999999999999988864 44544433211 000
Q ss_pred cccccccccCCCCCCceeEEEeccchh-------------------------HHHHHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-------------------------~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
..+.||+|++++|.. ....++..+.++|||||+++++
T Consensus 167 ------------~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lvys 228 (464)
T 3m6w_A 167 ------------FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYS 228 (464)
T ss_dssp ------------HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ------------ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 246899999987741 1267899999999999999885
No 220
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=99.31 E-value=1.5e-11 Score=103.93 Aligned_cols=142 Identities=16% Similarity=0.145 Sum_probs=94.9
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCcceEEEecCCCCCccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNN--IGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
.++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++...+ +...++.+...++..+ +
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~-----------l 145 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF-----------L 145 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH-----------H
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH-----------H
Confidence 35789999999999999998876 46789999999999999999875432 2223456655443211 0
Q ss_pred cccccccccCCCCCCceeEEEeccchh-----HH--HHHHHHHHHhccCCeEEEEeccCC----CcHHHHHHHHHhhhhh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLN-----PL--LQLADHIVSYAKPGAVVGISGILS----EQLPHIINRYSEFLED 202 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~~--~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~~~~ 202 (225)
. . ..++||+|+++.+.. .+ ..+++.+.+.|+|||++++..... .....+.+.+++.|..
T Consensus 146 ~--------~--~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~ 215 (283)
T 2i7c_A 146 E--------N--VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKK 215 (283)
T ss_dssp H--------H--CCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSE
T ss_pred H--------h--CCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCc
Confidence 0 0 256799999976421 12 678999999999999999864321 2234445555554543
Q ss_pred hcc-------cccCCceEEEeeee
Q 041459 203 ILL-------SEMDDWTCVSGTKK 219 (225)
Q Consensus 203 ~~~-------~~~~~w~~~~~~k~ 219 (225)
+.. ...|.|.-+.+.|+
T Consensus 216 v~~~~~~vP~y~~g~~g~~~~s~~ 239 (283)
T 2i7c_A 216 VEYANISIPTYPCGCIGILCCSKT 239 (283)
T ss_dssp EEEEEEECTTSGGGEEEEEEEESS
T ss_pred eEEEEEEcCCcCCCcEEEEEEeCC
Confidence 322 23456666666554
No 221
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.31 E-value=1.9e-11 Score=98.77 Aligned_cols=99 Identities=12% Similarity=0.141 Sum_probs=75.3
Q ss_pred HHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccc
Q 041459 50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERV 129 (225)
Q Consensus 50 ~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (225)
..+.... ++.+|||+|||+|.++..+++. +++|+++.+++.|+++ + +.+...+...++.
T Consensus 40 ~~l~~~~-~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~----~-----~~~~~~d~~~~~~------ 98 (219)
T 1vlm_A 40 QAVKCLL-PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR----G-----VFVLKGTAENLPL------ 98 (219)
T ss_dssp HHHHHHC-CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT----T-----CEEEECBTTBCCS------
T ss_pred HHHHHhC-CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc----C-----CEEEEcccccCCC------
Confidence 3444433 4889999999999999887655 9999999999999876 2 3455544433311
Q ss_pred cccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459 130 DGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
+.+.||+|+++..+++ ...++..+.+.|+|||.++++...
T Consensus 99 ----------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 99 ----------------KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVD 141 (219)
T ss_dssp ----------------CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ----------------CCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeC
Confidence 4568999999887764 567899999999999999997543
No 222
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=99.31 E-value=1.6e-11 Score=109.46 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=87.4
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.+++.+|||+|||+|..+..+++.. ..+++|+|+++.+++.+++++..+++. +.+...+...++ ..+
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~---~~~~~~D~~~~~-------~~~-- 311 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK---ATVKQGDGRYPS-------QWC-- 311 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC---CEEEECCTTCTH-------HHH--
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC---eEEEeCchhhch-------hhc--
Confidence 4578899999999999999988753 478999999999999999999888864 455555544331 001
Q ss_pred ccccccccCCCCCCceeEEEeccchhH-------------------------HHHHHHHHHHhccCCeEEEEecc-C-C-
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNP-------------------------LLQLADHIVSYAKPGAVVGISGI-L-S- 186 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~-~-~- 186 (225)
+.+.||+|++++|... ...++..+.++|||||.+++++. . .
T Consensus 312 -----------~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ 380 (429)
T 1sqg_A 312 -----------GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE 380 (429)
T ss_dssp -----------TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG
T ss_pred -----------ccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh
Confidence 3468999999876421 14779999999999999988643 2 2
Q ss_pred CcHHHHHHHHHh
Q 041459 187 EQLPHIINRYSE 198 (225)
Q Consensus 187 ~~~~~~~~~~~~ 198 (225)
++...+...+..
T Consensus 381 ene~~v~~~l~~ 392 (429)
T 1sqg_A 381 ENSLQIKAFLQR 392 (429)
T ss_dssp GTHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 333444455554
No 223
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=99.31 E-value=9.4e-12 Score=111.51 Aligned_cols=121 Identities=21% Similarity=0.234 Sum_probs=87.0
Q ss_pred CCCchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhc--------------CCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 40 GEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF--------------GAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 40 ~~~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~--------------~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
|.+.+.+.+.+.+... ..++.+|+|.|||+|.+++.+++. ...+++|+|+++.+++.|+.|+..
T Consensus 151 G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l 230 (445)
T 2okc_A 151 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL 230 (445)
T ss_dssp GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred CcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH
Confidence 4444555555555444 335779999999999999887653 235699999999999999999988
Q ss_pred cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHH--------------------H
Q 041459 104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL--------------------L 163 (225)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~--------------------~ 163 (225)
+++......+...+....+ ...+||+|++|||+... .
T Consensus 231 ~g~~~~~~~i~~gD~l~~~-----------------------~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~ 287 (445)
T 2okc_A 231 HGIGTDRSPIVCEDSLEKE-----------------------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQL 287 (445)
T ss_dssp TTCCSSCCSEEECCTTTSC-----------------------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHH
T ss_pred hCCCcCCCCEeeCCCCCCc-----------------------ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHH
Confidence 8874213445554432221 23489999999997531 3
Q ss_pred HHHHHHHHhccCCeEEEEec
Q 041459 164 QLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 164 ~~l~~~~~~LkpgG~l~~~~ 183 (225)
.++.++.+.|||||.+++..
T Consensus 288 ~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 288 NFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHhccCCEEEEEE
Confidence 67899999999999987753
No 224
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.31 E-value=2.5e-12 Score=104.62 Aligned_cols=112 Identities=17% Similarity=0.267 Sum_probs=81.0
Q ss_pred HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc-CC------CeEEEEeCCHHHHHHHHHHHHhcC-----CCCCcceE
Q 041459 46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GA------AMSVGVDIDPQAIKSAHQNAALNN-----IGPKKMKL 113 (225)
Q Consensus 46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~-~~------~~v~~vDi~~~~l~~a~~~~~~~~-----~~~~~~~~ 113 (225)
..+.+.+...++++.+|||+|||+|.++..+++. +. .+++++|+++.+++.|++++...+ .. .+.+
T Consensus 72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~--~v~~ 149 (227)
T 1r18_A 72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG--QLLI 149 (227)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT--SEEE
T ss_pred HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCC--ceEE
Confidence 3444444334567889999999999999988873 42 589999999999999999987654 22 3555
Q ss_pred EEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 114 HLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
...+.... +.....||+|+++.+.++. .+.+.+.|||||.+++...
T Consensus 150 ~~~d~~~~----------------------~~~~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 150 VEGDGRKG----------------------YPPNAPYNAIHVGAAAPDT---PTELINQLASGGRLIVPVG 195 (227)
T ss_dssp EESCGGGC----------------------CGGGCSEEEEEECSCBSSC---CHHHHHTEEEEEEEEEEES
T ss_pred EECCcccC----------------------CCcCCCccEEEECCchHHH---HHHHHHHhcCCCEEEEEEe
Confidence 55443221 0023679999998776543 3678899999999999654
No 225
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.31 E-value=5e-12 Score=104.07 Aligned_cols=102 Identities=10% Similarity=0.059 Sum_probs=74.9
Q ss_pred CCCcEEEEcccccHHHHHHHhc-----CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-----GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-----~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
++.+|||+|||+|..+..+++. +..+|+|+|+++.+++.|+ . .. .++.+...+..... .+...
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-~-----~~-~~v~~~~gD~~~~~-----~l~~~ 148 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-S-----DM-ENITLHQGDCSDLT-----TFEHL 148 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-G-----GC-TTEEEEECCSSCSG-----GGGGG
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-c-----cC-CceEEEECcchhHH-----HHHhh
Confidence 5789999999999999998875 4678999999999998876 1 11 34666666654320 00000
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHH-hccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVS-YAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~~ 184 (225)
...+||+|+++.....+..++..+.+ .|||||++++.++
T Consensus 149 -------------~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 149 -------------REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp -------------SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred -------------ccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 23369999987664456778899997 9999999999654
No 226
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.31 E-value=2.2e-11 Score=97.80 Aligned_cols=123 Identities=14% Similarity=0.199 Sum_probs=88.9
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..++ .+++|+|+++. . +.+...+....+.
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~------------~-----~~~~~~d~~~~~~------------- 111 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL------------D-----PRVTVCDMAQVPL------------- 111 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS------------S-----TTEEESCTTSCSC-------------
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC------------C-----ceEEEeccccCCC-------------
Confidence 457899999999999988763 57999999996 1 2344444433321
Q ss_pred ccccccCCCCCCceeEEEeccchh--HHHHHHHHHHHhccCCeEEEEeccCC--CcHHHHHHHHHhh-hhhhccc-ccCC
Q 041459 137 SSHEIRGISETEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISGILS--EQLPHIINRYSEF-LEDILLS-EMDD 210 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~-~~~~~~~-~~~~ 210 (225)
+.+.||+|+++..++ ....++..+.++|+|||.+++.+... ....++.+.+.+. |..+... ..+.
T Consensus 112 ---------~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 182 (215)
T 2zfu_A 112 ---------EDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTNSH 182 (215)
T ss_dssp ---------CTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCSTT
T ss_pred ---------CCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCCCe
Confidence 467899999987764 35678999999999999999976543 3566777777765 6655543 3356
Q ss_pred ceEEEeeeeccc
Q 041459 211 WTCVSGTKKRAK 222 (225)
Q Consensus 211 w~~~~~~k~~~~ 222 (225)
|..+.++|.+..
T Consensus 183 ~~~~~~~k~~~~ 194 (215)
T 2zfu_A 183 FFLFDFQKTGPP 194 (215)
T ss_dssp CEEEEEEECSSC
T ss_pred EEEEEEEecCcc
Confidence 788888887543
No 227
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.31 E-value=5.4e-11 Score=103.14 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=80.1
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++. +++.+...+....
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------------- 245 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS-DRVDVVEGDFFEP-------------- 245 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT-TTEEEEECCTTSC--------------
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCC-CceEEEeCCCCCC--------------
Confidence 35789999999999999988764 4568999999 99999999999877765 3466665543221
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
....||+|+++..+++ ...+++++.+.|||||.+++.+..
T Consensus 246 ----------~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 246 ----------LPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp ----------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ----------CCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 1234999999877754 246899999999999999987654
No 228
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=99.30 E-value=3.5e-12 Score=112.52 Aligned_cols=105 Identities=20% Similarity=0.206 Sum_probs=81.7
Q ss_pred cCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCc-ceEEEecCCCCCccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKK-MKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++|.+|||++||+|.+++.+++. ++.+|+++|+++.+++.+++|+..|++.+ + +.+...|...+ +
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~-~~v~v~~~Da~~~-------l---- 118 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPE-DRYEIHGMEANFF-------L---- 118 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCG-GGEEEECSCHHHH-------H----
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCC-ceEEEEeCCHHHH-------H----
Confidence 35789999999999999998873 56789999999999999999999999863 3 55554433111 0
Q ss_pred ccccccccc-CCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIR-GISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~-~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
. . ....||+|+++| +.....++..+.+.|++||++++++.
T Consensus 119 --------~~~--~~~~fD~V~lDP-~g~~~~~l~~a~~~Lk~gGll~~t~t 159 (392)
T 3axs_A 119 --------RKE--WGFGFDYVDLDP-FGTPVPFIESVALSMKRGGILSLTAT 159 (392)
T ss_dssp --------HSC--CSSCEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred --------HHh--hCCCCcEEEECC-CcCHHHHHHHHHHHhCCCCEEEEEec
Confidence 0 1 135799999998 44345688889999999999999874
No 229
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=99.29 E-value=1.5e-11 Score=104.01 Aligned_cols=99 Identities=16% Similarity=0.284 Sum_probs=74.4
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.++++....+.. ..+.+...+....
T Consensus 26 ~~~~~~VLDiG~G~G~lt~~L~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~D~~~~-------------- 89 (285)
T 1zq9_A 26 LRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVA-SKLQVLVGDVLKT-------------- 89 (285)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTG-GGEEEEESCTTTS--------------
T ss_pred CCCCCEEEEEcCcccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEcceecc--------------
Confidence 3467899999999999999998875 47999999999999999987655542 3466666655443
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHH--------------------HHhccCCeEEE
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHI--------------------VSYAKPGAVVG 180 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~--------------------~~~LkpgG~l~ 180 (225)
+...||+|++|+|++....++..+ ...++|||.++
T Consensus 90 ----------~~~~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 90 ----------DLPFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp ----------CCCCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred ----------cchhhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 234799999999987754443332 24789998764
No 230
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.28 E-value=7.8e-11 Score=98.01 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=94.6
Q ss_pred CCchHHHHHHHHHhh-------ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcce
Q 041459 41 EHATTKLCLLLLQSL-------IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMK 112 (225)
Q Consensus 41 ~~~~~~~~~~~L~~~-------~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~ 112 (225)
.|.+++..+..|..+ +.+..+|||+|||+|-+++.++.. +..+|+++|+++.+++.++.|+..+++. ..
T Consensus 108 ~H~STreRLp~lD~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~---~~ 184 (281)
T 3lcv_B 108 VHISTRERLPHLDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP---HR 184 (281)
T ss_dssp TSHHHHHHGGGHHHHHHHHGGGSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC---EE
T ss_pred cCCCHHHHhHhHHHHHHHHHhccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC---ce
Confidence 455566555444332 345789999999999999987765 7889999999999999999999988865 34
Q ss_pred EEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHH-----HHHHHHHhccCCeEEEEecc--C
Q 041459 113 LHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQ-----LADHIVSYAKPGAVVGISGI--L 185 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~-----~l~~~~~~LkpgG~l~~~~~--~ 185 (225)
+...+...- .+...||+++++-.++++.+ .+ .+.+.|+++|+++-... .
T Consensus 185 ~~v~D~~~~-----------------------~p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl 240 (281)
T 3lcv_B 185 TNVADLLED-----------------------RLDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSL 240 (281)
T ss_dssp EEECCTTTS-----------------------CCCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC--
T ss_pred EEEeeeccc-----------------------CCCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhh
Confidence 444443221 15778999999988887642 34 89999999999876544 3
Q ss_pred CCcHHHHHHHHHhhhh
Q 041459 186 SEQLPHIINRYSEFLE 201 (225)
Q Consensus 186 ~~~~~~~~~~~~~~~~ 201 (225)
.....-+.+.|+..++
T Consensus 241 ~Grs~gm~~~Y~~~~e 256 (281)
T 3lcv_B 241 GQRSKGMFQNYSQSFE 256 (281)
T ss_dssp -----CHHHHHHHHHH
T ss_pred cCCCcchhhHHHHHHH
Confidence 3344445556665543
No 231
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.26 E-value=4.5e-11 Score=94.43 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=78.3
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CC---------CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEE-EecCCCCCcc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GA---------AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLH-LVPDRTFPAS 124 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~---------~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 124 (225)
++++.+|||+|||+|.++..+++. +. .+++|+|+++.. ... .+.+. ..+.... +
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~--~~~~~~~~d~~~~--~ 84 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLE--GATFLCPADVTDP--R 84 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCT--TCEEECSCCTTSH--H
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCC--CCeEEEeccCCCH--H
Confidence 567899999999999999998875 54 789999999831 111 23333 2222111 0
Q ss_pred ccccccccccccccccccCCCCCCceeEEEeccchh--------HH------HHHHHHHHHhccCCeEEEEeccCCCcHH
Q 041459 125 MNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--------PL------LQLADHIVSYAKPGAVVGISGILSEQLP 190 (225)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--------~~------~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 190 (225)
........ .+.++||+|+++..++ .. ..++..+.++|||||.+++..+......
T Consensus 85 ~~~~~~~~------------~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~ 152 (196)
T 2nyu_A 85 TSQRILEV------------LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSR 152 (196)
T ss_dssp HHHHHHHH------------SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGH
T ss_pred HHHHHHHh------------cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHH
Confidence 00000000 0345799999976322 11 4678899999999999999877766667
Q ss_pred HHHHHHHhhhhh
Q 041459 191 HIINRYSEFLED 202 (225)
Q Consensus 191 ~~~~~~~~~~~~ 202 (225)
.+...++..|..
T Consensus 153 ~~~~~l~~~f~~ 164 (196)
T 2nyu_A 153 RLQRRLTEEFQN 164 (196)
T ss_dssp HHHHHHHHHEEE
T ss_pred HHHHHHHHHhcc
Confidence 777777665543
No 232
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=99.26 E-value=6.8e-11 Score=104.43 Aligned_cols=103 Identities=27% Similarity=0.293 Sum_probs=75.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCC---------------------------------------CeEEEEeCCHHHHHH
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGA---------------------------------------AMSVGVDIDPQAIKS 96 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~---------------------------------------~~v~~vDi~~~~l~~ 96 (225)
..++..|+|.+||+|++++.++..+. .+++|+|+++.+++.
T Consensus 199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~ 278 (393)
T 3k0b_A 199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI 278 (393)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence 34678999999999999998775322 359999999999999
Q ss_pred HHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-------HHHHHHHHH
Q 041459 97 AHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-------PLLQLADHI 169 (225)
Q Consensus 97 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~~~~l~~~ 169 (225)
|+.|+..+++. +.+.+...+...++ ....||+|++|||+. ....+...+
T Consensus 279 Ar~Na~~~gl~-~~I~~~~~D~~~~~-----------------------~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~l 334 (393)
T 3k0b_A 279 AKQNAVEAGLG-DLITFRQLQVADFQ-----------------------TEDEYGVVVANPPYGERLEDEEAVRQLYREM 334 (393)
T ss_dssp HHHHHHHTTCT-TCSEEEECCGGGCC-----------------------CCCCSCEEEECCCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CceEEEECChHhCC-----------------------CCCCCCEEEECCCCccccCCchhHHHHHHHH
Confidence 99999999886 35666665543331 345899999999973 233444555
Q ss_pred HHhccC--CeEEEEe
Q 041459 170 VSYAKP--GAVVGIS 182 (225)
Q Consensus 170 ~~~Lkp--gG~l~~~ 182 (225)
.+.||+ ||.+++.
T Consensus 335 g~~lk~~~g~~~~ii 349 (393)
T 3k0b_A 335 GIVYKRMPTWSVYVL 349 (393)
T ss_dssp HHHHHTCTTCEEEEE
T ss_pred HHHHhcCCCCEEEEE
Confidence 555555 7777664
No 233
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=99.25 E-value=2.7e-12 Score=108.25 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=73.2
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCcceEE--EecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL-NNIGPKKMKLH--LVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 132 (225)
++++.+|||+|||+|.++..+++. .+|+|+|+++ ++..++++... .... ..+.+. ..+...+
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l----------- 144 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFG-WNLITFKSKVDVTKM----------- 144 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTT-GGGEEEECSCCGGGC-----------
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcC-CCeEEEeccCcHhhC-----------
Confidence 457889999999999999999887 6799999998 54332211000 0000 123443 2222221
Q ss_pred ccccccccccCCCCCCceeEEEeccc-------hhHHH--HHHHHHHHhccCCe--EEEEeccCCCcHH---HHHHHHHh
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANIL-------LNPLL--QLADHIVSYAKPGA--VVGISGILSEQLP---HIINRYSE 198 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~-------~~~~~--~~l~~~~~~LkpgG--~l~~~~~~~~~~~---~~~~~~~~ 198 (225)
++++||+|+|+.. .++.. .++..+.++||||| .+++..+. .... ++...+..
T Consensus 145 -------------~~~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~-~~~~~~~~~l~~l~~ 210 (276)
T 2wa2_A 145 -------------EPFQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN-PYSCDVLEALMKMQA 210 (276)
T ss_dssp -------------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC-CCSHHHHHHHHHHHH
T ss_pred -------------CCCCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC-CCchhHHHHHHHHHH
Confidence 4578999999865 11121 36888999999999 88886665 3334 34444444
Q ss_pred hhh
Q 041459 199 FLE 201 (225)
Q Consensus 199 ~~~ 201 (225)
.|.
T Consensus 211 ~f~ 213 (276)
T 2wa2_A 211 RFG 213 (276)
T ss_dssp HHC
T ss_pred HcC
Confidence 443
No 234
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=99.25 E-value=3.3e-12 Score=107.17 Aligned_cols=116 Identities=11% Similarity=0.082 Sum_probs=73.9
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCcceEE--EecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL-NNIGPKKMKLH--LVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 132 (225)
++++.+|||+|||+|.++..+++. .+|+|+|+++ ++..++++... .... ..+.+. ..+...+
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l----------- 136 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYG-WNIVKFKSRVDIHTL----------- 136 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTT-GGGEEEECSCCTTTS-----------
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccC-CCeEEEecccCHhHC-----------
Confidence 557889999999999999998887 6799999998 53222211000 0000 124444 3333322
Q ss_pred ccccccccccCCCCCCceeEEEeccc-------hhHHH--HHHHHHHHhccCCe--EEEEeccCCCcHH---HHHHHHHh
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANIL-------LNPLL--QLADHIVSYAKPGA--VVGISGILSEQLP---HIINRYSE 198 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~-------~~~~~--~~l~~~~~~LkpgG--~l~~~~~~~~~~~---~~~~~~~~ 198 (225)
++++||+|+|+.. .++.. .++..+.++||||| .+++..+. .... ++...+..
T Consensus 137 -------------~~~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~-~~~~~~~~~l~~l~~ 202 (265)
T 2oxt_A 137 -------------PVERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC-PYSVEVMERLSVMQR 202 (265)
T ss_dssp -------------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC-TTSHHHHHHHHHHHH
T ss_pred -------------CCCCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC-CCChhHHHHHHHHHH
Confidence 4578999999765 11121 36788999999999 99887665 3444 44444444
Q ss_pred hh
Q 041459 199 FL 200 (225)
Q Consensus 199 ~~ 200 (225)
.|
T Consensus 203 ~f 204 (265)
T 2oxt_A 203 KW 204 (265)
T ss_dssp HH
T ss_pred Hc
Confidence 44
No 235
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.24 E-value=2.1e-10 Score=98.45 Aligned_cols=100 Identities=19% Similarity=0.117 Sum_probs=78.2
Q ss_pred CcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459 60 ELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS 138 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (225)
.+|||+|||+|.++..+++ .+..+++++|+ +.+++.|++++...++. +++.+...+....
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~----------------- 229 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAG-ERVSLVGGDMLQE----------------- 229 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHT-TSEEEEESCTTTC-----------------
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCC-CcEEEecCCCCCC-----------------
Confidence 8999999999999998876 45678999999 99999999988766554 3455555443221
Q ss_pred ccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459 139 HEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 139 ~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
....||+|++...+++ ...+++++.+.|||||.+++.+..
T Consensus 230 -------~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 274 (334)
T 2ip2_A 230 -------VPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT 274 (334)
T ss_dssp -------CCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred -------CCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 2357999999877753 347899999999999999987553
No 236
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=99.24 E-value=8.9e-11 Score=103.40 Aligned_cols=102 Identities=22% Similarity=0.298 Sum_probs=75.6
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCC---------------------------------------CeEEEEeCCHHHHHHH
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGA---------------------------------------AMSVGVDIDPQAIKSA 97 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~---------------------------------------~~v~~vDi~~~~l~~a 97 (225)
.++..|||++||+|++++.++..+. .+++|+|+++.+++.|
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 4678999999999999998775421 4699999999999999
Q ss_pred HHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-------HHHHHHHHHH
Q 041459 98 HQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-------PLLQLADHIV 170 (225)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~~~~l~~~~ 170 (225)
+.|+..+++. +.+.+...+...++ ....||+|++|||+. ....+...+.
T Consensus 274 r~Na~~~gl~-~~i~~~~~D~~~l~-----------------------~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg 329 (385)
T 3ldu_A 274 RENAEIAGVD-EYIEFNVGDATQFK-----------------------SEDEFGFIITNPPYGERLEDKDSVKQLYKELG 329 (385)
T ss_dssp HHHHHHHTCG-GGEEEEECCGGGCC-----------------------CSCBSCEEEECCCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC-CceEEEECChhhcC-----------------------cCCCCcEEEECCCCcCccCCHHHHHHHHHHHH
Confidence 9999998875 34666665543331 345899999999973 2334555555
Q ss_pred HhccC--CeEEEEe
Q 041459 171 SYAKP--GAVVGIS 182 (225)
Q Consensus 171 ~~Lkp--gG~l~~~ 182 (225)
+.||+ |+.+++.
T Consensus 330 ~~lk~~~g~~~~ii 343 (385)
T 3ldu_A 330 YAFRKLKNWSYYLI 343 (385)
T ss_dssp HHHHTSBSCEEEEE
T ss_pred HHHhhCCCCEEEEE
Confidence 56665 7776664
No 237
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.23 E-value=3.6e-10 Score=94.96 Aligned_cols=111 Identities=17% Similarity=0.136 Sum_probs=78.7
Q ss_pred CCcEEEEcccc---cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccc---cc
Q 041459 59 GELFLDYGTGS---GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERV---DG 131 (225)
Q Consensus 59 ~~~vlDiGcGt---G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 131 (225)
..+|||+|||+ |.++..+.+ .+..+++++|+|+.|++.|++++... ..+.+...+...... +.... ..
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~----~~v~~~~~D~~~~~~-~~~~~~~~~~ 152 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD----PNTAVFTADVRDPEY-ILNHPDVRRM 152 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC----TTEEEEECCTTCHHH-HHHSHHHHHH
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC----CCeEEEEeeCCCchh-hhccchhhcc
Confidence 47999999999 988766655 35678999999999999999887421 345566555433200 00000 00
Q ss_pred cccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCC
Q 041459 132 IVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSE 187 (225)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~ 187 (225)
+ +..+||+|+++..+++ ...++.++.+.|||||.+++++...+
T Consensus 153 ~-------------d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~ 200 (274)
T 2qe6_A 153 I-------------DFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDT 200 (274)
T ss_dssp C-------------CTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred C-------------CCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence 1 3357999999887765 56789999999999999999876553
No 238
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.23 E-value=7e-11 Score=99.53 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=69.5
Q ss_pred CCCcEEEEcccccH----HHHHHHhc-C----CCeEEEEeCCHHHHHHHHHHHHhc----CCC---------------C-
Q 041459 58 GGELFLDYGTGSGI----LGIAAIKF-G----AAMSVGVDIDPQAIKSAHQNAALN----NIG---------------P- 108 (225)
Q Consensus 58 ~~~~vlDiGcGtG~----~~~~l~~~-~----~~~v~~vDi~~~~l~~a~~~~~~~----~~~---------------~- 108 (225)
++.+|||+|||||. +++.+++. + ..+|+|+|+|+.||+.|++++... +++ .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999997 56666653 3 248999999999999999875211 110 0
Q ss_pred ---------CcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhcc
Q 041459 109 ---------KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAK 174 (225)
Q Consensus 109 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~Lk 174 (225)
..+.+...+.... .+...++||+|+|...+.+ ...++..+.+.|+
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~---------------------~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~ 243 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEK---------------------QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK 243 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCS---------------------SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE
T ss_pred ceeechhhcccCeEEecccCCC---------------------CCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhC
Confidence 0122222222111 0112468999999655432 4678999999999
Q ss_pred CCeEEEEe
Q 041459 175 PGAVVGIS 182 (225)
Q Consensus 175 pgG~l~~~ 182 (225)
|||++++.
T Consensus 244 pgG~L~lg 251 (274)
T 1af7_A 244 PDGLLFAG 251 (274)
T ss_dssp EEEEEEEC
T ss_pred CCcEEEEE
Confidence 99999983
No 239
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=99.23 E-value=1.2e-10 Score=102.44 Aligned_cols=103 Identities=22% Similarity=0.189 Sum_probs=77.1
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCC---------------------------------------CeEEEEeCCHHHHHH
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGA---------------------------------------AMSVGVDIDPQAIKS 96 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~---------------------------------------~~v~~vDi~~~~l~~ 96 (225)
..++..++|.+||+|++++.++..+. .+++|+|+++.+++.
T Consensus 192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~ 271 (384)
T 3ldg_A 192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI 271 (384)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence 34678999999999999998775322 359999999999999
Q ss_pred HHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-------HHHHHHHHH
Q 041459 97 AHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-------PLLQLADHI 169 (225)
Q Consensus 97 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~~~~l~~~ 169 (225)
|++|+..+++. +.+.+...+...++ ....||+|++|||+. ....+...+
T Consensus 272 Ar~Na~~~gl~-~~I~~~~~D~~~l~-----------------------~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~l 327 (384)
T 3ldg_A 272 ARKNAREVGLE-DVVKLKQMRLQDFK-----------------------TNKINGVLISNPPYGERLLDDKAVDILYNEM 327 (384)
T ss_dssp HHHHHHHTTCT-TTEEEEECCGGGCC-----------------------CCCCSCEEEECCCCTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CceEEEECChHHCC-----------------------ccCCcCEEEECCchhhccCCHHHHHHHHHHH
Confidence 99999999886 35666665543331 345899999999974 244555556
Q ss_pred HHhccC--CeEEEEe
Q 041459 170 VSYAKP--GAVVGIS 182 (225)
Q Consensus 170 ~~~Lkp--gG~l~~~ 182 (225)
.+.||+ ||.+++.
T Consensus 328 g~~lk~~~g~~~~ii 342 (384)
T 3ldg_A 328 GETFAPLKTWSQFIL 342 (384)
T ss_dssp HHHHTTCTTSEEEEE
T ss_pred HHHHhhCCCcEEEEE
Confidence 666665 8877764
No 240
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.21 E-value=6.8e-12 Score=111.04 Aligned_cols=100 Identities=14% Similarity=0.200 Sum_probs=72.9
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++ ++.. .. ..+.. .....+ .
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~-----~~---~~~~~---~~~~~l-~-- 166 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRV-----RT---DFFEK---ATADDV-R-- 166 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCE-----EC---SCCSH---HHHHHH-H--
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCc-----ce---eeech---hhHhhc-c--
Confidence 4678999999999999999988765 799999999999999865 3221 10 00000 000000 0
Q ss_pred ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEec
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
.++++||+|+++..+++ +..+++++.++|||||++++..
T Consensus 167 --------~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 208 (416)
T 4e2x_A 167 --------RTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFED 208 (416)
T ss_dssp --------HHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------cCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 03578999999988766 5678999999999999999863
No 241
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.20 E-value=6.4e-11 Score=104.27 Aligned_cols=115 Identities=16% Similarity=0.140 Sum_probs=78.9
Q ss_pred hHHHHHHHHHhhccCCCcEEEEccc------ccHHHHHHHh-c-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEE
Q 041459 44 TTKLCLLLLQSLIKGGELFLDYGTG------SGILGIAAIK-F-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHL 115 (225)
Q Consensus 44 ~~~~~~~~L~~~~~~~~~vlDiGcG------tG~~~~~l~~-~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~ 115 (225)
........|..+..++.+|||+||| +|..++.+++ + +..+|+|+|+++.|. . ...++.+..
T Consensus 202 y~~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~---~~~rI~fv~ 270 (419)
T 3sso_A 202 FTPHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V---DELRIRTIQ 270 (419)
T ss_dssp CHHHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G---CBTTEEEEE
T ss_pred HHHHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h---cCCCcEEEE
Confidence 4555556666555568899999999 7777776554 3 678899999999872 1 113467777
Q ss_pred ecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch--hHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 116 VPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
.+...+++ ...+.+ ..++||+|+++... ......++++.+.|||||++++.++.
T Consensus 271 GDa~dlpf-----~~~l~~-----------~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 271 GDQNDAEF-----LDRIAR-----------RYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CCTTCHHH-----HHHHHH-----------HHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred ecccccch-----hhhhhc-----------ccCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 76654321 000000 14689999997543 34667899999999999999997554
No 242
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=99.20 E-value=3.2e-10 Score=93.36 Aligned_cols=115 Identities=22% Similarity=0.113 Sum_probs=84.6
Q ss_pred CCchHHHHHHHHHhh------ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEE
Q 041459 41 EHATTKLCLLLLQSL------IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLH 114 (225)
Q Consensus 41 ~~~~~~~~~~~L~~~------~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~ 114 (225)
.|.+++..+..|..+ ..++.+|||+|||+|.+++.+. +..+|+|+|+++.+++.+++++..++.. ..+.
T Consensus 82 ~H~STrerLp~ld~fY~~i~~~~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~---~~~~ 156 (253)
T 3frh_A 82 LHASTKERLAELDTLYDFIFSAETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWD---FTFA 156 (253)
T ss_dssp TSHHHHHHGGGHHHHHHHHTSSCCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCE---EEEE
T ss_pred hCCCHHHHhhhHHHHHHHHhcCCCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCC---ceEE
Confidence 455666655544433 1357899999999999999877 7889999999999999999998887743 3444
Q ss_pred EecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHH----HHHHHHHhccCCeEEEEec
Q 041459 115 LVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQ----LADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~----~l~~~~~~LkpgG~l~~~~ 183 (225)
..+....+ ..+.||+++++-.++++.. ..-.+.+.|+++++++-..
T Consensus 157 v~D~~~~~-----------------------~~~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 157 LQDVLCAP-----------------------PAEAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp ECCTTTSC-----------------------CCCBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred EeecccCC-----------------------CCCCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence 44433221 4668999999977776542 3448888999999887643
No 243
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=99.20 E-value=1.3e-10 Score=99.02 Aligned_cols=84 Identities=21% Similarity=0.317 Sum_probs=63.2
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++++..+++. ++.+...+...+
T Consensus 40 ~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~~--~v~~~~~D~~~~-------------- 102 (299)
T 2h1r_A 40 IKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGYN--NLEVYEGDAIKT-------------- 102 (299)
T ss_dssp CCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTCC--CEEC----CCSS--------------
T ss_pred CCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCC--ceEEEECchhhC--------------
Confidence 3467899999999999999998874 57999999999999999998766653 355555554433
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHH
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLA 166 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l 166 (225)
+...||+|++|+|++.....+
T Consensus 103 ----------~~~~~D~Vv~n~py~~~~~~~ 123 (299)
T 2h1r_A 103 ----------VFPKFDVCTANIPYKISSPLI 123 (299)
T ss_dssp ----------CCCCCSEEEEECCGGGHHHHH
T ss_pred ----------CcccCCEEEEcCCcccccHHH
Confidence 334799999999987654443
No 244
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=99.18 E-value=6.6e-11 Score=104.54 Aligned_cols=125 Identities=20% Similarity=0.158 Sum_probs=82.4
Q ss_pred CCchHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe
Q 041459 41 EHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV 116 (225)
Q Consensus 41 ~~~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~ 116 (225)
.+.+...+.+.+...+ .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.| ..+.+...
T Consensus 20 ~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-----------~~~~~~~~ 88 (421)
T 2ih2_A 20 RVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----------PWAEGILA 88 (421)
T ss_dssp -CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----------TTEEEEES
T ss_pred eEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-----------CCCcEEeC
Confidence 3334444444443332 24679999999999999998864 567899999999988766 12344444
Q ss_pred cCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh--------------H------------------HHH
Q 041459 117 PDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--------------P------------------LLQ 164 (225)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--------------~------------------~~~ 164 (225)
+.... ...++||+|++|||+. . +..
T Consensus 89 D~~~~-----------------------~~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (421)
T 2ih2_A 89 DFLLW-----------------------EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGA 145 (421)
T ss_dssp CGGGC-----------------------CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHH
T ss_pred Chhhc-----------------------CccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHH
Confidence 32211 1346899999998872 1 114
Q ss_pred HHHHHHHhccCCeEEEEeccC----CCcHHHHHHHHHhh
Q 041459 165 LADHIVSYAKPGAVVGISGIL----SEQLPHIINRYSEF 199 (225)
Q Consensus 165 ~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~~~~ 199 (225)
+++.+.++|+|||.+++.... ......+++.+.+.
T Consensus 146 fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~ 184 (421)
T 2ih2_A 146 FLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLARE 184 (421)
T ss_dssp HHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhc
Confidence 588899999999998885332 23445566655543
No 245
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=99.17 E-value=3.2e-10 Score=96.39 Aligned_cols=90 Identities=17% Similarity=0.199 Sum_probs=69.5
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+.++.+|||+|||+|.++..+++. ..+++|+|+++.+++.+++++.. . .++.+...|...++.
T Consensus 48 ~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~--~--~~v~vi~gD~l~~~~------------ 110 (295)
T 3gru_A 48 LTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKEL--Y--NNIEIIWGDALKVDL------------ 110 (295)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHH--C--SSEEEEESCTTTSCG------------
T ss_pred CCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhcc--C--CCeEEEECchhhCCc------------
Confidence 456889999999999999999887 46799999999999999998762 2 346677776654421
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHh
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSY 172 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~ 172 (225)
+...||+|++|+|++....++..+.+.
T Consensus 111 ----------~~~~fD~Iv~NlPy~is~pil~~lL~~ 137 (295)
T 3gru_A 111 ----------NKLDFNKVVANLPYQISSPITFKLIKR 137 (295)
T ss_dssp ----------GGSCCSEEEEECCGGGHHHHHHHHHHH
T ss_pred ----------ccCCccEEEEeCcccccHHHHHHHHhc
Confidence 344699999999998766665555543
No 246
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=99.16 E-value=6.1e-11 Score=101.33 Aligned_cols=115 Identities=10% Similarity=0.050 Sum_probs=71.8
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeC----CHHHHHHHHHHHHhcCCCCCcceEEEe-cCCCCCcccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDI----DPQAIKSAHQNAALNNIGPKKMKLHLV-PDRTFPASMNERVD 130 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi----~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 130 (225)
++++.+|||+|||+|.++..+++. .+|+|+|+ ++.+++.+ .........+.+... +...+
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~D~~~l--------- 144 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPI----PMSTYGWNLVRLQSGVDVFFI--------- 144 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCC----CCCSTTGGGEEEECSCCTTTS---------
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHH----HhhhcCCCCeEEEeccccccC---------
Confidence 556889999999999999999887 57999999 55433211 011111122344333 22222
Q ss_pred ccccccccccccCCCCCCceeEEEeccchh-------HHH--HHHHHHHHhccCCeEEEEeccCCC--cHHHHHHHHHhh
Q 041459 131 GIVEDLSSHEIRGISETEKYDVVIANILLN-------PLL--QLADHIVSYAKPGAVVGISGILSE--QLPHIINRYSEF 199 (225)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~~--~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~ 199 (225)
+..+||+|+|+.+.. +.. ..+..+.++|||||.+++..+... ....+...++..
T Consensus 145 ---------------~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~~ 209 (305)
T 2p41_A 145 ---------------PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRK 209 (305)
T ss_dssp ---------------CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHH
T ss_pred ---------------CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHH
Confidence 356899999986531 111 467888899999999988655442 223444444444
Q ss_pred h
Q 041459 200 L 200 (225)
Q Consensus 200 ~ 200 (225)
|
T Consensus 210 f 210 (305)
T 2p41_A 210 H 210 (305)
T ss_dssp H
T ss_pred c
Confidence 4
No 247
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.15 E-value=8.7e-11 Score=108.34 Aligned_cols=106 Identities=16% Similarity=0.209 Sum_probs=77.4
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
...+.+|||+|||.|.++..+++.|+ +|+|+|.++.+|+.|+..+...+.. .+.+...+.+.+ ....
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~--~~~~~~~~~~~~-------~~~~--- 130 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDF--AAEFRVGRIEEV-------IAAL--- 130 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTS--EEEEEECCHHHH-------HHHC---
T ss_pred cCCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCC--ceEEEECCHHHH-------hhhc---
Confidence 34578999999999999999999986 5999999999999999988766632 255555544222 0111
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHH-----HHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQ-----LADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~-----~l~~~~~~LkpgG~l~~~~~ 184 (225)
.+++||+|+|..+++|..+ .+..+.+.|+++|..++..+
T Consensus 131 ----------~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~ 174 (569)
T 4azs_A 131 ----------EEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILEL 174 (569)
T ss_dssp ----------CTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred ----------cCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEEe
Confidence 4678999999999887542 24456666788777665444
No 248
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=99.13 E-value=2.3e-10 Score=99.46 Aligned_cols=143 Identities=18% Similarity=0.199 Sum_probs=89.9
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC---CCC---CcceEEEecCCCCCccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN---IGP---KKMKLHLVPDRTFPASMNERVDG 131 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~ 131 (225)
.+++||++|||+|.++..+++.+..+++++|+++.+++.|++++...+ ++. .++++...|+..+
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~---------- 257 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV---------- 257 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH----------
T ss_pred CCCEEEEEECChhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHH----------
Confidence 468999999999999999888777889999999999999999875321 221 1456665554221
Q ss_pred cccccccccccCCCCCCceeEEEeccch-------------hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459 132 IVEDLSSHEIRGISETEKYDVVIANILL-------------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198 (225)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (225)
+... ....++||+|+++++. ..+..+++.+.+.|+|||++++..-.. ...+....+.+
T Consensus 258 -L~~~-------~~~~~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs~s~-~~~e~~~~~~~ 328 (364)
T 2qfm_A 258 -LKRY-------AKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCV-NLTEALSLYEE 328 (364)
T ss_dssp -HHHH-------HHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEET-TCHHHHHHHHH
T ss_pred -HHhh-------hccCCCceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEcCCc-chHHHHHHHHH
Confidence 1100 0025689999998743 112333444589999999998843222 22343444433
Q ss_pred ----hhhhhcc--------cccCCceEEEeeee
Q 041459 199 ----FLEDILL--------SEMDDWTCVSGTKK 219 (225)
Q Consensus 199 ----~~~~~~~--------~~~~~w~~~~~~k~ 219 (225)
.|..+.. ...+.|.-....|+
T Consensus 329 ~l~~~F~~v~~~~~~~~vPsy~~~w~f~~~~k~ 361 (364)
T 2qfm_A 329 QLGRLYCPVEFSKEIVCVPSYLELWVFYTVWKK 361 (364)
T ss_dssp HHTTSSSCEEEEEEEECCGGGSSCEEEEEEEEC
T ss_pred HHHHhCCceEEeeEeeecCCchhheEeEEeecc
Confidence 3432222 12347877666665
No 249
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=99.12 E-value=5e-10 Score=95.81 Aligned_cols=121 Identities=10% Similarity=0.020 Sum_probs=82.5
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++|+..+++.+ +.+...+...+..
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~--v~~~~~D~~~~~~---------- 167 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC--CELAEEDFLAVSP---------- 167 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS--EEEEECCGGGSCT----------
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe--EEEEeCChHhcCc----------
Confidence 457899999999999999998873 45789999999999999999999888753 5565554432210
Q ss_pred cccccccccCCCCCCceeEEEeccchhH---------------------------HHHHHHHHHHhccCCeEEEEe-ccC
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP---------------------------LLQLADHIVSYAKPGAVVGIS-GIL 185 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~---------------------------~~~~l~~~~~~LkpgG~l~~~-~~~ 185 (225)
.......||.|++++|... ..+++..+.++++ ||+++++ |-.
T Consensus 168 ---------~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 168 ---------SDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp ---------TCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred ---------cccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 0001146999999877410 1245777777787 8888775 322
Q ss_pred -CCc-HHHHHHHHHh
Q 041459 186 -SEQ-LPHIINRYSE 198 (225)
Q Consensus 186 -~~~-~~~~~~~~~~ 198 (225)
..+ ...+...+++
T Consensus 238 ~~~Ene~~v~~~l~~ 252 (309)
T 2b9e_A 238 CQEENEDVVRDALQQ 252 (309)
T ss_dssp CGGGTHHHHHHHHTT
T ss_pred ChHHhHHHHHHHHHh
Confidence 233 3344444443
No 250
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=99.09 E-value=7.3e-10 Score=95.86 Aligned_cols=99 Identities=11% Similarity=0.071 Sum_probs=70.3
Q ss_pred cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|.++..+++ .+..+++++|+ +.++. +++....+.. +++.+...+....
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~-~~v~~~~~d~~~~-------------- 244 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVA-GRWKVVEGDFLRE-------------- 244 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGT-TSEEEEECCTTTC--------------
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCC-CCeEEEecCCCCC--------------
Confidence 3577999999999999998776 45668999999 44554 3232223332 3455555443210
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.+ .||+|++...+++ ...+++++.++|||||.+++.+.
T Consensus 245 ----------~p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 245 ----------VP-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp ----------CC-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred ----------CC-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 23 8999999887764 25789999999999999998655
No 251
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.07 E-value=2.1e-09 Score=89.50 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=68.8
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.++++... . .++.+...|...++.
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~--~--~~v~~i~~D~~~~~~------------ 89 (255)
T 3tqs_A 27 PQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ--Q--KNITIYQNDALQFDF------------ 89 (255)
T ss_dssp CCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT--C--TTEEEEESCTTTCCG------------
T ss_pred CCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh--C--CCcEEEEcchHhCCH------------
Confidence 4468899999999999999999876 6799999999999999988754 1 346677776655421
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHh
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSY 172 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~ 172 (225)
..+.....|| |++|+|++.-..++.++...
T Consensus 90 ------~~~~~~~~~~-vv~NlPY~is~~il~~ll~~ 119 (255)
T 3tqs_A 90 ------SSVKTDKPLR-VVGNLPYNISTPLLFHLFSQ 119 (255)
T ss_dssp ------GGSCCSSCEE-EEEECCHHHHHHHHHHHHHT
T ss_pred ------HHhccCCCeE-EEecCCcccCHHHHHHHHhC
Confidence 0111235688 88999998766666655543
No 252
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=99.07 E-value=3e-10 Score=104.17 Aligned_cols=138 Identities=18% Similarity=0.185 Sum_probs=91.2
Q ss_pred CCCchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhc----C---------------CCeEEEEeCCHHHHHHHH
Q 041459 40 GEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF----G---------------AAMSVGVDIDPQAIKSAH 98 (225)
Q Consensus 40 ~~~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~----~---------------~~~v~~vDi~~~~l~~a~ 98 (225)
|.+.|.+.+...+... ..++.+|+|.|||||.+.+.+++. . ..+++|+|+++.+++.|+
T Consensus 149 G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~ 228 (541)
T 2ar0_A 149 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL 228 (541)
T ss_dssp -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred CeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHH
Confidence 4555555555554443 335789999999999998876642 1 136999999999999999
Q ss_pred HHHHhcCCCCC---cceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHH-------------
Q 041459 99 QNAALNNIGPK---KMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL------------- 162 (225)
Q Consensus 99 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~------------- 162 (225)
.|+..+++... ...+...+.-..+ . ....+||+|++|||+...
T Consensus 229 ~nl~l~gi~~~~~~~~~I~~gDtL~~~--------~-------------~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~ 287 (541)
T 2ar0_A 229 MNCLLHDIEGNLDHGGAIRLGNTLGSD--------G-------------ENLPKAHIVATNPPFGSAAGTNITRTFVHPT 287 (541)
T ss_dssp HHHHTTTCCCBGGGTBSEEESCTTSHH--------H-------------HTSCCEEEEEECCCCTTCSSCCCCSCCSSCC
T ss_pred HHHHHhCCCccccccCCeEeCCCcccc--------c-------------ccccCCeEEEECCCcccccchhhHhhcCCCC
Confidence 99988876531 1334443321110 0 034679999999997531
Q ss_pred ----HHHHHHHHHhccCCeEEEEeccC----C-CcHHHHHHHHHh
Q 041459 163 ----LQLADHIVSYAKPGAVVGISGIL----S-EQLPHIINRYSE 198 (225)
Q Consensus 163 ----~~~l~~~~~~LkpgG~l~~~~~~----~-~~~~~~~~~~~~ 198 (225)
..++..+.+.|||||++.+.... . .....+++.+.+
T Consensus 288 ~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~ 332 (541)
T 2ar0_A 288 SNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD 332 (541)
T ss_dssp SCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHHHHHHHHHhh
Confidence 25789999999999998875321 1 223455555544
No 253
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=99.04 E-value=6.5e-09 Score=90.26 Aligned_cols=100 Identities=20% Similarity=0.267 Sum_probs=74.9
Q ss_pred CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
+..+|+|+|||+|.++..+++ ++..+++..|. |.+++.|++++...+. +++.+...+ .+..
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~--~rv~~~~gD--~~~~------------- 240 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEE--EQIDFQEGD--FFKD------------- 240 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--C--CSEEEEESC--TTTS-------------
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhccc--CceeeecCc--cccC-------------
Confidence 467999999999999998775 67778899997 8899999988764442 345555444 3310
Q ss_pred ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+...+|++++...+++ ...+++++++.|+|||.+++.+.
T Consensus 241 ---------~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 241 ---------PLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp ---------CCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ---------CCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 3446899999777764 35689999999999999988654
No 254
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=99.03 E-value=9.1e-10 Score=100.90 Aligned_cols=141 Identities=20% Similarity=0.174 Sum_probs=94.3
Q ss_pred CCCCchHHHHHHHHHhhc------cCCCcEEEEcccccHHHHHHHhc----CCCeEEEEeCCHHHHHHHHHHHHhcCCCC
Q 041459 39 TGEHATTKLCLLLLQSLI------KGGELFLDYGTGSGILGIAAIKF----GAAMSVGVDIDPQAIKSAHQNAALNNIGP 108 (225)
Q Consensus 39 ~~~~~~~~~~~~~L~~~~------~~~~~vlDiGcGtG~~~~~l~~~----~~~~v~~vDi~~~~l~~a~~~~~~~~~~~ 108 (225)
.|.+.|.+.+.+++...+ .++.+|+|.+||||.+.+.+++. +..+++|+|+++.++..|+.|+..+++..
T Consensus 196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~ 275 (542)
T 3lkd_A 196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI 275 (542)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc
Confidence 345555555555554442 25779999999999998877653 35689999999999999999999888753
Q ss_pred CcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH----------------H----------
Q 041459 109 KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP----------------L---------- 162 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~----------------~---------- 162 (225)
..+.+...+.-...+ .. ....+||+|++|||+.. +
T Consensus 276 ~~~~I~~gDtL~~d~------------------p~-~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~ 336 (542)
T 3lkd_A 276 ENQFLHNADTLDEDW------------------PT-QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD 336 (542)
T ss_dssp GGEEEEESCTTTSCS------------------CC-SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH
T ss_pred CccceEecceecccc------------------cc-cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh
Confidence 344555544321100 00 03568999999999731 0
Q ss_pred HHHHHHHHHhcc-CCeEEEEeccC-----CCcHHHHHHHHHh
Q 041459 163 LQLADHIVSYAK-PGAVVGISGIL-----SEQLPHIINRYSE 198 (225)
Q Consensus 163 ~~~l~~~~~~Lk-pgG~l~~~~~~-----~~~~~~~~~~~~~ 198 (225)
-.++.++.+.|| +||++.+.... ......+++.+.+
T Consensus 337 ~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle 378 (542)
T 3lkd_A 337 FAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLE 378 (542)
T ss_dssp HHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHh
Confidence 136889999999 99998764322 1223456655544
No 255
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=99.01 E-value=8.6e-09 Score=82.85 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=81.5
Q ss_pred HHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCcceEEEecCCCC-----C
Q 041459 50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI--GPKKMKLHLVPDRTF-----P 122 (225)
Q Consensus 50 ~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~-----~ 122 (225)
++|...+.+.++|||+|| |+-++++++....+++++|.++...+.|++++..+++ . +++.+..++.... |
T Consensus 22 ~~L~~~l~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~-~~I~~~~gda~~~~~wg~p 98 (202)
T 3cvo_A 22 EALRMAYEEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEG-TEVNIVWTDIGPTGDWGHP 98 (202)
T ss_dssp HHHHHHHHHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTT-CEEEEEECCCSSBCGGGCB
T ss_pred HHHHHHhhCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-CceEEEEeCchhhhccccc
Confidence 333334456789999998 5677888875468899999999999999999998887 4 5677887764321 0
Q ss_pred cccc--ccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 123 ASMN--ERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 123 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
.+-. +....+.. .+......+.||+|+++.... ...+..+.+.|+|||++++-.
T Consensus 99 ~~~~~~~~l~~~~~-----~i~~~~~~~~fDlIfIDg~k~--~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 99 VSDAKWRSYPDYPL-----AVWRTEGFRHPDVVLVDGRFR--VGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp SSSTTGGGTTHHHH-----GGGGCTTCCCCSEEEECSSSH--HHHHHHHHHHCSSCEEEEETT
T ss_pred ccchhhhhHHHHhh-----hhhccccCCCCCEEEEeCCCc--hhHHHHHHHhcCCCeEEEEeC
Confidence 0000 00000000 000011236799999987644 355666779999999998754
No 256
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.00 E-value=1.8e-09 Score=90.75 Aligned_cols=115 Identities=15% Similarity=0.066 Sum_probs=72.6
Q ss_pred CcEEEEccccc--HHHHHHH-h-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 60 ELFLDYGTGSG--ILGIAAI-K-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 60 ~~vlDiGcGtG--~~~~~l~-~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.+|||+|||++ ..+..++ + .+..+|+++|.|+.|++.|++++...+ ...+.+...+..... .++..
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~--~~~~~~v~aD~~~~~--------~~l~~ 149 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP--EGRTAYVEADMLDPA--------SILDA 149 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS--SSEEEEEECCTTCHH--------HHHTC
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC--CCcEEEEEecccChh--------hhhcc
Confidence 68999999973 2333333 3 467899999999999999998875432 234566666554321 00000
Q ss_pred cccccccCCCCCCceeEEEeccchhHH------HHHHHHHHHhccCCeEEEEeccCCC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGISGILSE 187 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~------~~~l~~~~~~LkpgG~l~~~~~~~~ 187 (225)
... -..+..+..+ .|+++..++++ ..++..+.+.|+|||+++++....+
T Consensus 150 ~~~--~~~~D~~~p~-av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 150 PEL--RDTLDLTRPV-ALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp HHH--HTTCCTTSCC-EEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred ccc--ccccCcCCcc-hHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 000 0001112223 57788887653 4689999999999999999866554
No 257
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=99.00 E-value=5.7e-09 Score=86.14 Aligned_cols=95 Identities=14% Similarity=0.224 Sum_probs=66.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.++++.... .++.+...+...++.
T Consensus 28 ~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~----~~v~~~~~D~~~~~~------------ 90 (244)
T 1qam_A 28 LNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH----DNFQVLNKDILQFKF------------ 90 (244)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC----CSEEEECCCGGGCCC------------
T ss_pred CCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC----CCeEEEEChHHhCCc------------
Confidence 3467899999999999999998876 67999999999999999887531 235565555433211
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCe
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGA 177 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG 177 (225)
.....| .|++|+|++....++..+......++
T Consensus 91 ---------~~~~~~-~vv~nlPy~~~~~~l~~~l~~~~~~~ 122 (244)
T 1qam_A 91 ---------PKNQSY-KIFGNIPYNISTDIIRKIVFDSIADE 122 (244)
T ss_dssp ---------CSSCCC-EEEEECCGGGHHHHHHHHHHSCCCSE
T ss_pred ---------ccCCCe-EEEEeCCcccCHHHHHHHHhcCCCCe
Confidence 012345 68899999866655555554433333
No 258
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.99 E-value=1.1e-09 Score=92.88 Aligned_cols=110 Identities=12% Similarity=0.161 Sum_probs=75.9
Q ss_pred ccCCCcEEEEccc------ccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceE-EEecCCCCCccccc
Q 041459 56 IKGGELFLDYGTG------SGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKL-HLVPDRTFPASMNE 127 (225)
Q Consensus 56 ~~~~~~vlDiGcG------tG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 127 (225)
++++.+|||+||| +|. ...+...+ ..+|+|+|+++. +. .+.+ ...+....+
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~-------------v~--~v~~~i~gD~~~~~----- 119 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF-------------VS--DADSTLIGDCATVH----- 119 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC-------------BC--SSSEEEESCGGGCC-----
T ss_pred CCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC-------------CC--CCEEEEECccccCC-----
Confidence 5678899999994 476 33333345 478999999997 11 2345 554433221
Q ss_pred cccccccccccccccCCCCCCceeEEEeccch--------------hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHH
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILL--------------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHII 193 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~--------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 193 (225)
..++||+|++|+.. +.+..+++.+.+.|||||.+++..+......++.
T Consensus 120 ------------------~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~ 181 (290)
T 2xyq_A 120 ------------------TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLY 181 (290)
T ss_dssp ------------------CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHH
T ss_pred ------------------ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHH
Confidence 23679999998542 2245789999999999999999777666667888
Q ss_pred HHHHhh-hhhhc
Q 041459 194 NRYSEF-LEDIL 204 (225)
Q Consensus 194 ~~~~~~-~~~~~ 204 (225)
..+++. |..+.
T Consensus 182 ~~l~~~GF~~v~ 193 (290)
T 2xyq_A 182 KLMGHFSWWTAF 193 (290)
T ss_dssp HHHTTEEEEEEE
T ss_pred HHHHHcCCcEEE
Confidence 888776 65443
No 259
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.99 E-value=3.3e-09 Score=100.02 Aligned_cols=104 Identities=25% Similarity=0.306 Sum_probs=74.3
Q ss_pred cCCCcEEEEcccccHHHHHHHhcC-------------------------------------------CCeEEEEeCCHHH
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFG-------------------------------------------AAMSVGVDIDPQA 93 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~-------------------------------------------~~~v~~vDi~~~~ 93 (225)
.++..|+|.+||+|++++.++..+ ..+++|+|+++.+
T Consensus 189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a 268 (703)
T 3v97_A 189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV 268 (703)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence 467899999999999999876531 1469999999999
Q ss_pred HHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-------HHHH-
Q 041459 94 IKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-------LLQL- 165 (225)
Q Consensus 94 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~- 165 (225)
++.|+.|+..+++. +.+.+...+...+.. . ...+.||+|++||||.. ...+
T Consensus 269 v~~A~~N~~~agv~-~~i~~~~~D~~~~~~-------~-------------~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly 327 (703)
T 3v97_A 269 IQRARTNARLAGIG-ELITFEVKDVAQLTN-------P-------------LPKGPYGTVLSNPPYGERLDSEPALIALH 327 (703)
T ss_dssp HHHHHHHHHHTTCG-GGEEEEECCGGGCCC-------S-------------CTTCCCCEEEECCCCCC---CCHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CceEEEECChhhCcc-------c-------------cccCCCCEEEeCCCccccccchhHHHHHH
Confidence 99999999999986 346666655432210 0 01237999999999842 2233
Q ss_pred --HHHHHHhccCCeEEEE
Q 041459 166 --ADHIVSYAKPGAVVGI 181 (225)
Q Consensus 166 --l~~~~~~LkpgG~l~~ 181 (225)
+..+.+.+.|||.+++
T Consensus 328 ~~l~~~lk~~~~g~~~~i 345 (703)
T 3v97_A 328 SLLGRIMKNQFGGWNLSL 345 (703)
T ss_dssp HHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHhhCCCCeEEE
Confidence 3444455568998877
No 260
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=98.94 E-value=1.5e-09 Score=99.51 Aligned_cols=139 Identities=19% Similarity=0.159 Sum_probs=92.9
Q ss_pred CCCCchHHHHHHHHHhhccC-CCcEEEEcccccHHHHHHHhc--------C--------CCeEEEEeCCHHHHHHHHHHH
Q 041459 39 TGEHATTKLCLLLLQSLIKG-GELFLDYGTGSGILGIAAIKF--------G--------AAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 39 ~~~~~~~~~~~~~L~~~~~~-~~~vlDiGcGtG~~~~~l~~~--------~--------~~~v~~vDi~~~~l~~a~~~~ 101 (225)
.|.+.|.+.+.+++...+.+ ..+|+|.+||||.+.+.+++. . ..+++|+|+++.++..|+.|+
T Consensus 224 ~G~fyTP~~Vv~lmv~ll~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl 303 (544)
T 3khk_A 224 GGQYYTPKSIVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNM 303 (544)
T ss_dssp STTTCCCHHHHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHH
T ss_pred CCeEeCCHHHHHHHHHHHhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHH
Confidence 35666777766666555332 249999999999998876431 1 357999999999999999999
Q ss_pred HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHH-------------------
Q 041459 102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL------------------- 162 (225)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~------------------- 162 (225)
..+++.. .+.+. .++.+.. ......+||+|++|||+...
T Consensus 304 ~l~gi~~-~i~i~--~gDtL~~-------------------~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~ 361 (544)
T 3khk_A 304 VIRGIDF-NFGKK--NADSFLD-------------------DQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNG 361 (544)
T ss_dssp HHTTCCC-BCCSS--SCCTTTS-------------------CSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC-
T ss_pred HHhCCCc-cccee--ccchhcC-------------------cccccccccEEEECCCcCCccccchhhhhhhhhhcCccc
Confidence 9888763 22212 2222210 00035689999999997520
Q ss_pred -------------HHHHHHHHHhccCCeEEEEeccC----C--CcHHHHHHHHHhh
Q 041459 163 -------------LQLADHIVSYAKPGAVVGISGIL----S--EQLPHIINRYSEF 199 (225)
Q Consensus 163 -------------~~~l~~~~~~LkpgG~l~~~~~~----~--~~~~~~~~~~~~~ 199 (225)
-.++..+.+.|||||++.+.... . .....+++.+.+.
T Consensus 362 ~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~ 417 (544)
T 3khk_A 362 EKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQ 417 (544)
T ss_dssp -CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHT
T ss_pred ccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhC
Confidence 14688999999999997764321 2 2345666665543
No 261
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.93 E-value=3.5e-11 Score=99.35 Aligned_cols=99 Identities=14% Similarity=0.224 Sum_probs=69.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++.. . ...+.+...+...++.
T Consensus 27 ~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~--~--~~~v~~~~~D~~~~~~------------ 89 (245)
T 1yub_A 27 LKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK--L--NTRVTLIHQDILQFQF------------ 89 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT--T--CSEEEECCSCCTTTTC------------
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc--c--CCceEEEECChhhcCc------------
Confidence 3467899999999999999998876 789999999999998887754 1 1345555555443311
Q ss_pred cccccccCCCCCCceeEEEeccchhHH----HHHH--------------HHHHHhccCCeEEEE
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPL----LQLA--------------DHIVSYAKPGAVVGI 181 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~----~~~l--------------~~~~~~LkpgG~l~~ 181 (225)
...++| .|++|+|+... ..++ +.+.++|||||.+++
T Consensus 90 ---------~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v 143 (245)
T 1yub_A 90 ---------PNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL 143 (245)
T ss_dssp ---------CCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred ---------ccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence 013578 78899987532 1222 457778888877655
No 262
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.92 E-value=3.9e-09 Score=88.65 Aligned_cols=89 Identities=17% Similarity=0.204 Sum_probs=65.3
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+.++ +|||+|||+|.++..+++.+ .+++|+|+++.+++.++++... .++.+...|...++.
T Consensus 45 ~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~-----~~v~vi~~D~l~~~~------------ 105 (271)
T 3fut_A 45 PFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG-----LPVRLVFQDALLYPW------------ 105 (271)
T ss_dssp CCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT-----SSEEEEESCGGGSCG------------
T ss_pred CCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC-----CCEEEEECChhhCCh------------
Confidence 4467 99999999999999999886 6799999999999999988652 245666665543311
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHh
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSY 172 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~ 172 (225)
.....+|.|++|+|++.-..++.++...
T Consensus 106 ---------~~~~~~~~iv~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 106 ---------EEVPQGSLLVANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp ---------GGSCTTEEEEEEECSSCCHHHHHHHHHH
T ss_pred ---------hhccCccEEEecCcccccHHHHHHHhcC
Confidence 0112589999999997655555554443
No 263
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=98.92 E-value=6e-09 Score=98.43 Aligned_cols=120 Identities=11% Similarity=0.026 Sum_probs=76.8
Q ss_pred CCCcEEEEcccccHHHHHHHhc-C---CCeEEEEeCCHHHHHHH--HHHHHhcCCCCC--cceEEEecCCCCCccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-G---AAMSVGVDIDPQAIKSA--HQNAALNNIGPK--KMKLHLVPDRTFPASMNERV 129 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~---~~~v~~vDi~~~~l~~a--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 129 (225)
++.+|+|.|||+|.+++.+++. + ..+++|+|+++.+++.| +.++..+.+... ...+.. .+.+. .
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~--dD~L~-----~- 392 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITG--EDVCS-----L- 392 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEEC--CCGGG-----C-
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEe--cchhc-----c-
Confidence 4789999999999999988764 2 35799999999999999 666544332210 111221 11110 0
Q ss_pred cccccccccccccCCCCCCceeEEEeccchhH--------------------------------HHHHHHHHHHhccCCe
Q 041459 130 DGIVEDLSSHEIRGISETEKYDVVIANILLNP--------------------------------LLQLADHIVSYAKPGA 177 (225)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------------------------------~~~~l~~~~~~LkpgG 177 (225)
......+||+|++|||+.. +..++..+.++|++||
T Consensus 393 -------------~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGG 459 (878)
T 3s1s_A 393 -------------NPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGT 459 (878)
T ss_dssp -------------CGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTC
T ss_pred -------------cccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCc
Confidence 0003467999999999821 1235788999999999
Q ss_pred EEEEeccCC------CcHHHHHHHHHh
Q 041459 178 VVGISGILS------EQLPHIINRYSE 198 (225)
Q Consensus 178 ~l~~~~~~~------~~~~~~~~~~~~ 198 (225)
.+++..... .....+++.+.+
T Consensus 460 rLAfIlP~s~Lf~sg~~~kkLRk~LLe 486 (878)
T 3s1s_A 460 VISAIMPKQYLTAQGNESKAFREFLVG 486 (878)
T ss_dssp EEEEEEETHHHHCCSHHHHHHHHHHTT
T ss_pred EEEEEEChHHhccCChHHHHHHHHHHh
Confidence 988743321 124555555543
No 264
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.92 E-value=4.6e-08 Score=82.83 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=101.0
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc---CCCCCcceEEEecCCCCCcccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN---NIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
...++||-+|.|.|..+..+++. +..+++.+|+++.+++.|++.+... .++..++++...|+..+-.
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~--------- 152 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVN--------- 152 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTS---------
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHh---------
Confidence 35789999999999999998875 5789999999999999999887532 2334577888877755411
Q ss_pred ccccccccccCCCCCCceeEEEeccchh-------HHHHHHHHHHHhccCCeEEEEec---cC-CCcHHHHHHHHHhhhh
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGISG---IL-SEQLPHIINRYSEFLE 201 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~---~~-~~~~~~~~~~~~~~~~ 201 (225)
...++||+|+++.+-. .-.++.+.+.+.|+|||+++... +. .+....+.+.+++.|.
T Consensus 153 ------------~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~ 220 (294)
T 3o4f_A 153 ------------QTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFS 220 (294)
T ss_dssp ------------CSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCS
T ss_pred ------------hccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCC
Confidence 1456899999975421 12567889999999999999731 11 2334445555555554
Q ss_pred hhc-------ccccCCceEEEeeeec
Q 041459 202 DIL-------LSEMDDWTCVSGTKKR 220 (225)
Q Consensus 202 ~~~-------~~~~~~w~~~~~~k~~ 220 (225)
.+. ....|.|.-..+.|+.
T Consensus 221 ~v~~~~~~vPty~~g~w~f~~as~~~ 246 (294)
T 3o4f_A 221 DVGFYQAAIPTYYGGIMTFAWATDND 246 (294)
T ss_dssp EEEEEEECCTTSSSSCEEEEEEESCT
T ss_pred ceeeeeeeeccCCCcceeheeEECCC
Confidence 332 2346889888777753
No 265
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=98.91 E-value=5e-09 Score=91.45 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=69.7
Q ss_pred CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
++.+|||+|||+|.++..+++ .+..+++++|+ +.+++.|+++ .++.+...+... +.
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~~------------- 259 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF--------SGVEHLGGDMFD-GV------------- 259 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTT-CC-------------
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc--------CCCEEEecCCCC-CC-------------
Confidence 467999999999999998876 56778999999 8888766531 235555544322 10
Q ss_pred ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
+. . |+|++...+++ ...++++++++|||||.+++.+..
T Consensus 260 ---------p~-~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 302 (368)
T 3reo_A 260 ---------PK-G-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI 302 (368)
T ss_dssp ---------CC-C-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred ---------CC-C-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 32 3 99999887763 346899999999999999987654
No 266
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.90 E-value=9.7e-09 Score=85.16 Aligned_cols=99 Identities=16% Similarity=0.241 Sum_probs=69.8
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++..+++.+..+++|+|+++.+++.++++ . ..++.+...|...++..
T Consensus 29 ~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~-----~~~v~~i~~D~~~~~~~----------- 91 (249)
T 3ftd_A 29 IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G-----DERLEVINEDASKFPFC----------- 91 (249)
T ss_dssp CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C-----CTTEEEECSCTTTCCGG-----------
T ss_pred CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c-----CCCeEEEEcchhhCChh-----------
Confidence 346789999999999999999988778899999999999999876 1 13456666665444210
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhc--cCCeEEEE
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYA--KPGAVVGI 181 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~L--kpgG~l~~ 181 (225)
. ....+ .|++|+|++....++.++.... -+.+++++
T Consensus 92 -------~--~~~~~-~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~ 129 (249)
T 3ftd_A 92 -------S--LGKEL-KVVGNLPYNVASLIIENTVYNKDCVPLAVFMV 129 (249)
T ss_dssp -------G--SCSSE-EEEEECCTTTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred -------H--ccCCc-EEEEECchhccHHHHHHHHhcCCCCceEEEEE
Confidence 0 01134 8889999987777666666543 23444544
No 267
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=98.88 E-value=7.6e-09 Score=90.21 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=70.2
Q ss_pred CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
++.+|||+|||+|.++..+++ .+..+++++|+ +.+++.|++. .++.+...+... +.
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~-~~------------- 257 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF--------PGVTHVGGDMFK-EV------------- 257 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTT-CC-------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc--------CCeEEEeCCcCC-CC-------------
Confidence 468999999999999998776 56778999999 8888766531 235555544322 10
Q ss_pred ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459 137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
+. . |+|++...+++ ...++++++++|||||.+++.+..
T Consensus 258 ---------p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~ 300 (364)
T 3p9c_A 258 ---------PS-G-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI 300 (364)
T ss_dssp ---------CC-C-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred ---------CC-C-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 32 3 99999877764 357899999999999999987654
No 268
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=98.87 E-value=4.9e-09 Score=91.43 Aligned_cols=94 Identities=18% Similarity=0.124 Sum_probs=70.0
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++. ..+.+...+....
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~-------------- 264 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL--------SGIEHVGGDMFAS-------------- 264 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTTC--------------
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc--------CCCEEEeCCcccC--------------
Confidence 35689999999999999988764 5668999999 8888776531 1245554443221
Q ss_pred cccccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
... ||+|+++..+++. ..+++++.++|||||.+++.+.
T Consensus 265 ----------~~~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 307 (372)
T 1fp1_D 265 ----------VPQ-GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF 307 (372)
T ss_dssp ----------CCC-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ----------CCC-CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 122 9999998887642 3789999999999999998754
No 269
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=98.86 E-value=7e-09 Score=89.76 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=70.9
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++. . .+.+...+....
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~d~~~~-------------- 243 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------N--NLTYVGGDMFTS-------------- 243 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------T--TEEEEECCTTTC--------------
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------C--CcEEEeccccCC--------------
Confidence 35689999999999999988764 5678999999 9998877531 1 244554443110
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccC---CeEEEEeccC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKP---GAVVGISGIL 185 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~Lkp---gG~l~~~~~~ 185 (225)
.+ .||+|++...+++ ...+++++.++||| ||.+++.+..
T Consensus 244 ----------~p-~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 290 (352)
T 1fp2_A 244 ----------IP-NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV 290 (352)
T ss_dssp ----------CC-CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred ----------CC-CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence 12 3999999888764 23789999999999 9999987653
No 270
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=98.85 E-value=2.2e-09 Score=83.54 Aligned_cols=105 Identities=9% Similarity=0.147 Sum_probs=73.2
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+++|.+|||+|||+ +++|+++.|++.|+++... .+.+...+...++. ...
T Consensus 10 ~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~------~~~~~~~d~~~~~~------~~~--- 59 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN------EGRVSVENIKQLLQ------SAH--- 59 (176)
T ss_dssp CCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT------TSEEEEEEGGGGGG------GCC---
T ss_pred CCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc------CcEEEEechhcCcc------ccC---
Confidence 56799999999996 2399999999999987532 14555555433210 000
Q ss_pred cccccccCCCCCCceeEEEeccchhHH----HHHHHHHHHhccCCeEEEEeccCC---------CcHHHHHHHHHhh-h
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPL----LQLADHIVSYAKPGAVVGISGILS---------EQLPHIINRYSEF-L 200 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~~~~~~-~ 200 (225)
++++||+|+++..+++. ..++.++++.|||||.+++..... ....++.+.+.+. |
T Consensus 60 ----------~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 60 ----------KESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp ----------CSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred ----------CCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 35689999998776654 778999999999999999853311 1245666666654 5
No 271
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.85 E-value=1.1e-09 Score=91.42 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=60.9
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCH-------HHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDP-------QAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERV 129 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~-------~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (225)
.++.+|||+|||+|.+++.+++.+ .+|+++|+++ .+++.|++|+..+++. +++.+...+...+ +
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~-~ri~~~~~d~~~~-------l 152 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTA-ARINLHFGNAAEQ-------M 152 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTT-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH-TTEEEEESCHHHH-------H
T ss_pred CCcCeEEEeeCccCHHHHHHHHhC-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc-cCeEEEECCHHHH-------H
Confidence 356899999999999999999875 4699999999 9999999998877754 2355655443211 0
Q ss_pred cccccccccccccCCCCC--CceeEEEeccchhH
Q 041459 130 DGIVEDLSSHEIRGISET--EKYDVVIANILLNP 161 (225)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~--~~~DvIi~~~~~~~ 161 (225)
..+ +. .+||+|++++++.+
T Consensus 153 ~~~-------------~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 153 PAL-------------VKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHH-------------HHHHCCCSEEEECCCC--
T ss_pred Hhh-------------hccCCCccEEEECCCCCC
Confidence 001 22 67999999998754
No 272
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=98.85 E-value=4e-09 Score=93.35 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=62.5
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+.+|.+|||+|||+|..++.+++.+ .+|+++|+++.+++.|++|+..+ ++. ++.+...+...+ +...
T Consensus 91 l~~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~--~i~~i~~Da~~~-------L~~~- 159 (410)
T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGK--DVNILTGDFKEY-------LPLI- 159 (410)
T ss_dssp SCTTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTC--EEEEEESCGGGS-------HHHH-
T ss_pred cCCCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCCC--cEEEEECcHHHh-------hhhc-
Confidence 4458999999999999999988875 57999999999999999999877 663 466665554321 0000
Q ss_pred cccccccccCCCCCCceeEEEeccchhH
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP 161 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~ 161 (225)
...+||+|+++||+..
T Consensus 160 ------------~~~~fDvV~lDPPrr~ 175 (410)
T 3ll7_A 160 ------------KTFHPDYIYVDPARRS 175 (410)
T ss_dssp ------------HHHCCSEEEECCEEC-
T ss_pred ------------cCCCceEEEECCCCcC
Confidence 1247999999998743
No 273
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.84 E-value=1.1e-08 Score=94.94 Aligned_cols=98 Identities=18% Similarity=0.197 Sum_probs=74.1
Q ss_pred CCcEEEEcccccHHHHHH---HhcCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 59 GELFLDYGTGSGILGIAA---IKFGAA--MSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l---~~~~~~--~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+..|+|+|||+|.+...+ ++.+.. +|+|||.++ +...|++....|++. +++++..++.+...
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~-dkVtVI~gd~eev~----------- 424 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWG-SQVTVVSSDMREWV----------- 424 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTG-GGEEEEESCTTTCC-----------
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCC-CeEEEEeCcceecc-----------
Confidence 357999999999885543 333333 689999998 566788888889987 67888887776542
Q ss_pred cccccccccCCCCCCceeEEEeccch-----hHHHHHHHHHHHhccCCeEEEE
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~-----~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
.++++|+|++.++- +.+...+....++|||||+++-
T Consensus 425 ------------LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimiP 465 (637)
T 4gqb_A 425 ------------APEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSIP 465 (637)
T ss_dssp ------------CSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEES
T ss_pred ------------CCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEcc
Confidence 56799999996552 3344677788899999999873
No 274
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=98.80 E-value=3.3e-08 Score=85.65 Aligned_cols=95 Identities=17% Similarity=0.107 Sum_probs=69.8
Q ss_pred cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++ .. .+.+...+...
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~--~v~~~~~d~~~--------------- 247 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NE--NLNFVGGDMFK--------------- 247 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CS--SEEEEECCTTT---------------
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CC--CcEEEeCccCC---------------
Confidence 35689999999999999998764 5668999999 788866643 11 24454443321
Q ss_pred cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccC---CeEEEEeccC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKP---GAVVGISGIL 185 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~Lkp---gG~l~~~~~~ 185 (225)
+...||+|+++..+++ ...+++++.++||| ||.+++.+..
T Consensus 248 ----------~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 295 (358)
T 1zg3_A 248 ----------SIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDIS 295 (358)
T ss_dssp ----------CCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred ----------CCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence 1124999999888764 33789999999999 9999886553
No 275
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.79 E-value=3.5e-08 Score=83.18 Aligned_cols=93 Identities=26% Similarity=0.264 Sum_probs=65.1
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCC---eEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAA---MSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~---~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
..++.+|||+|||+|.++..+++.+.. +++|+|+++.+++.++++. . .++.+...|...++..
T Consensus 40 ~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~---~~v~~i~~D~~~~~~~-------- 105 (279)
T 3uzu_A 40 PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---G---ELLELHAGDALTFDFG-------- 105 (279)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---G---GGEEEEESCGGGCCGG--------
T ss_pred CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---C---CCcEEEECChhcCChh--------
Confidence 446889999999999999998876432 3999999999999999883 1 3466666665443210
Q ss_pred ccccccccccCCCC--CCceeEEEeccchhHHHHHHHHHHHh
Q 041459 133 VEDLSSHEIRGISE--TEKYDVVIANILLNPLLQLADHIVSY 172 (225)
Q Consensus 133 ~~~~~~~~~~~~~~--~~~~DvIi~~~~~~~~~~~l~~~~~~ 172 (225)
.+.. ......|++|+|++.-..++.++...
T Consensus 106 ----------~~~~~~~~~~~~vv~NlPY~iss~il~~ll~~ 137 (279)
T 3uzu_A 106 ----------SIARPGDEPSLRIIGNLPYNISSPLLFHLMSF 137 (279)
T ss_dssp ----------GGSCSSSSCCEEEEEECCHHHHHHHHHHHGGG
T ss_pred ----------HhcccccCCceEEEEccCccccHHHHHHHHhc
Confidence 0001 11345788999998877776665543
No 276
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.74 E-value=2.1e-08 Score=85.36 Aligned_cols=85 Identities=18% Similarity=0.289 Sum_probs=61.3
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
++++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|++++..++ .++.+...+...++ ..+.
T Consensus 24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g---~~v~~v~~d~~~l~--------~~l~ 92 (301)
T 1m6y_A 24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSYREAD--------FLLK 92 (301)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCGGGHH--------HHHH
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEECCHHHHH--------HHHH
Confidence 446889999999999999998875 46789999999999999999987765 24555554432220 0000
Q ss_pred ccccccccCCCCCCceeEEEeccchh
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLN 160 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~ 160 (225)
. . ...+||.|++++++.
T Consensus 93 ~--------~-g~~~~D~Vl~D~gvS 109 (301)
T 1m6y_A 93 T--------L-GIEKVDGILMDLGVS 109 (301)
T ss_dssp H--------T-TCSCEEEEEEECSCC
T ss_pred h--------c-CCCCCCEEEEcCccc
Confidence 0 0 125799999988764
No 277
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=98.72 E-value=7.5e-08 Score=83.87 Aligned_cols=107 Identities=20% Similarity=0.256 Sum_probs=78.9
Q ss_pred hccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCC----CcceEEEecCCCCCccccccc
Q 041459 55 LIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGP----KKMKLHLVPDRTFPASMNERV 129 (225)
Q Consensus 55 ~~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 129 (225)
.+++|.+|||++||+|+-+.+++..+ ...++++|+++.-++..++++...+... ..+.+...++..+.
T Consensus 145 ~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~------- 217 (359)
T 4fzv_A 145 GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWG------- 217 (359)
T ss_dssp CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHH-------
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcc-------
Confidence 46689999999999999999888754 3579999999999999999998776542 23444443332210
Q ss_pred cccccccccccccCCCCCCceeEEEeccchhH---------------------------HHHHHHHHHHhccCCeEEEEe
Q 041459 130 DGIVEDLSSHEIRGISETEKYDVVIANILLNP---------------------------LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---------------------------~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.. ..+.||.|+++.|... ...++..+.++|||||+++.+
T Consensus 218 -~~-------------~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYs 283 (359)
T 4fzv_A 218 -EL-------------EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYS 283 (359)
T ss_dssp -HH-------------STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred -hh-------------ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 11 3568999999876210 246789999999999998875
No 278
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=98.70 E-value=1.4e-07 Score=86.33 Aligned_cols=141 Identities=17% Similarity=0.223 Sum_probs=91.6
Q ss_pred CCCCchHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhc----C----------CCeEEEEeCCHHHHHHHHHHHH
Q 041459 39 TGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKF----G----------AAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 39 ~~~~~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~----~----------~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
.|++-|.+.+.+++...+ .++.+|+|.+||||.+.+.+.+. . ...++|+|+++.+...|+-|+.
T Consensus 196 ~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~ 275 (530)
T 3ufb_A 196 SGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL 275 (530)
T ss_dssp CCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH
T ss_pred CceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH
Confidence 466667777777666553 45779999999999998876532 1 2469999999999999999999
Q ss_pred hcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-------------------HH
Q 041459 103 LNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-------------------LL 163 (225)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------~~ 163 (225)
.++.... .+...+.-..+. .......+||+|++|||+.. ..
T Consensus 276 lhg~~~~--~I~~~dtL~~~~------------------~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~ 335 (530)
T 3ufb_A 276 LHGLEYP--RIDPENSLRFPL------------------REMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAM 335 (530)
T ss_dssp HHTCSCC--EEECSCTTCSCG------------------GGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHH
T ss_pred hcCCccc--cccccccccCch------------------hhhcccccceEEEecCCCCccccccccccCchhcccchhHH
Confidence 8887642 233333211100 00013457999999999831 12
Q ss_pred HHHHHHHHhcc-------CCeEEEEecc----CC-CcHHHHHHHHHhh
Q 041459 164 QLADHIVSYAK-------PGAVVGISGI----LS-EQLPHIINRYSEF 199 (225)
Q Consensus 164 ~~l~~~~~~Lk-------pgG~l~~~~~----~~-~~~~~~~~~~~~~ 199 (225)
.++..+.+.|| +||++.+... .. .....+++.+-+.
T Consensus 336 ~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle~ 383 (530)
T 3ufb_A 336 LFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLKN 383 (530)
T ss_dssp HHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhhc
Confidence 35777888887 6898776422 12 2334466555543
No 279
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=98.69 E-value=5.9e-07 Score=75.71 Aligned_cols=140 Identities=9% Similarity=-0.052 Sum_probs=94.1
Q ss_pred CCCcEEEEcccccHHHHHHHhc------CCCeEEEEeCCH--------------------------HHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSGILGIAAIKF------GAAMSVGVDIDP--------------------------QAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~------~~~~v~~vDi~~--------------------------~~l~~a~~~~~~~~ 105 (225)
....|||+|+..|..++.+++. +..+++++|..+ ..++.+++++...+
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 4679999999999988876642 257799999642 14677899999888
Q ss_pred CCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch-hHHHHHHHHHHHhccCCeEEEEecc
Q 041459 106 IGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL-NPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+..+++.+..++.... + +.+ +.++||+|+.+.-. ......++.+...|+|||++++-++
T Consensus 186 l~~~~I~li~Gda~et-------L------------~~~-~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDT-------L------------PTA-PIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp CCSTTEEEEESCHHHH-------S------------TTC-CCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CCcCceEEEEeCHHHH-------H------------hhC-CCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 7445677776554211 1 111 34689999998765 4567889999999999999999766
Q ss_pred CCCcHHHHHHHHHhhhhhhc---ccccCCceEEEeeee
Q 041459 185 LSEQLPHIINRYSEFLEDIL---LSEMDDWTCVSGTKK 219 (225)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~---~~~~~~w~~~~~~k~ 219 (225)
.. .+...+.+.++..... ....-+|..+.++|.
T Consensus 246 ~~--~~G~~~Av~Ef~~~~~i~~~i~~~~~~~v~~rk~ 281 (282)
T 2wk1_A 246 MM--CPPCKDAVDEYRAKFDIADELITIDRDGVYWQRT 281 (282)
T ss_dssp TT--CHHHHHHHHHHHHHTTCCSCCEECSSSCEEEECC
T ss_pred CC--CHHHHHHHHHHHHhcCCceEEEEecCEEEEEEeC
Confidence 32 1233344444432222 122345778888875
No 280
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.67 E-value=2.2e-07 Score=77.59 Aligned_cols=123 Identities=11% Similarity=0.087 Sum_probs=78.5
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
++++.+|||+|||+|.++..+++. +...+.|+|+...+..... ...... ..+.....+.+..
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi---~~~~~g-~~ii~~~~~~dv~------------- 134 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPM---NVQSLG-WNIITFKDKTDIH------------- 134 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCC---CCCBTT-GGGEEEECSCCTT-------------
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccc---ccCcCC-CCeEEEeccceeh-------------
Confidence 567889999999999999988764 6777889998743210000 000000 0122222111111
Q ss_pred ccccccccCCCCCCceeEEEeccchh----H---HH--HHHHHHHHhccCC-eEEEEeccC--CCcHHHHHHHHHhhhhh
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLN----P---LL--QLADHIVSYAKPG-AVVGISGIL--SEQLPHIINRYSEFLED 202 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~----~---~~--~~l~~~~~~Lkpg-G~l~~~~~~--~~~~~~~~~~~~~~~~~ 202 (225)
. .....+|+|+|+...+ . .. .+++.+.++|||| |.+++..+. ..+..++...++..|..
T Consensus 135 --------~-l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~ 205 (277)
T 3evf_A 135 --------R-LEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGG 205 (277)
T ss_dssp --------T-SCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCC
T ss_pred --------h-cCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCC
Confidence 0 0467899999987443 1 12 3467788999999 999998777 67778888888877754
Q ss_pred hc
Q 041459 203 IL 204 (225)
Q Consensus 203 ~~ 204 (225)
+.
T Consensus 206 V~ 207 (277)
T 3evf_A 206 TV 207 (277)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 281
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.66 E-value=6.7e-08 Score=80.22 Aligned_cols=94 Identities=17% Similarity=0.149 Sum_probs=61.2
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++.+|||+|||+|.++. +.+.+..+++|+|+++.+++.++++.... .++.+...|...++. .+. ..
T Consensus 19 ~~~~~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~~~~~a~~~~~~~----~~v~~i~~D~~~~~~--~~~-~~---- 86 (252)
T 1qyr_A 19 PQKGQAMVEIGPGLAALTE-PVGERLDQLTVIELDRDLAARLQTHPFLG----PKLTIYQQDAMTFNF--GEL-AE---- 86 (252)
T ss_dssp CCTTCCEEEECCTTTTTHH-HHHTTCSCEEEECCCHHHHHHHHTCTTTG----GGEEEECSCGGGCCH--HHH-HH----
T ss_pred CCCcCEEEEECCCCcHHHH-hhhCCCCeEEEEECCHHHHHHHHHHhccC----CceEEEECchhhCCH--HHh-hc----
Confidence 4467899999999999999 66532223999999999999998876432 235565555433211 000 00
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHH
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVS 171 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~ 171 (225)
..+..+.|++|+|+.....++.++..
T Consensus 87 ----------~~~~~~~vvsNlPY~i~~~il~~ll~ 112 (252)
T 1qyr_A 87 ----------KMGQPLRVFGNLPYNISTPLMFHLFS 112 (252)
T ss_dssp ----------HHTSCEEEEEECCTTTHHHHHHHHHT
T ss_pred ----------ccCCceEEEECCCCCccHHHHHHHHh
Confidence 01235899999999876665554443
No 282
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.64 E-value=5.1e-08 Score=90.89 Aligned_cols=104 Identities=16% Similarity=0.237 Sum_probs=70.6
Q ss_pred CCcEEEEcccccHHHHH---HHh-cC----------CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcc
Q 041459 59 GELFLDYGTGSGILGIA---AIK-FG----------AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPAS 124 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~---l~~-~~----------~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (225)
++.|+|+|||+|.++.. +++ .+ ..+|+|||.++.++..++.... +++. +++.+..++.+.+..
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~-d~VtVI~gd~eev~l- 486 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWK-RRVTIIESDMRSLPG- 486 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTT-TCSEEEESCGGGHHH-
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCC-CeEEEEeCchhhccc-
Confidence 45899999999999653 222 12 3489999999988766665544 7776 567777766544310
Q ss_pred ccccccccccccccccccCCCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEE
Q 041459 125 MNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~ 181 (225)
.+ .....+++|+|++-++-. ...+.+..+.++|||||+++-
T Consensus 487 -------p~---------~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP 532 (745)
T 3ua3_A 487 -------IA---------KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIP 532 (745)
T ss_dssp -------HH---------HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEES
T ss_pred -------cc---------ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEEC
Confidence 00 000257899999976522 245677778899999998873
No 283
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=98.56 E-value=2.2e-07 Score=81.11 Aligned_cols=146 Identities=18% Similarity=0.187 Sum_probs=92.5
Q ss_pred cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC---CCC---CcceEEEecCCCCCcccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN---IGP---KKMKLHLVPDRTFPASMNERVD 130 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
.++++||-+|.|.|..+..+++.+..+++.||+++.+++.|++.+.... ++. .++++...|+..
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~---------- 273 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP---------- 273 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH----------
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH----------
Confidence 3568999999999999999888777899999999999999998754211 111 234555544321
Q ss_pred ccccccccccccCCCCCCceeEEEeccch-------------hHHHHHHHHHHHhccCCeEEEEecc---CCCcHHHHHH
Q 041459 131 GIVEDLSSHEIRGISETEKYDVVIANILL-------------NPLLQLADHIVSYAKPGAVVGISGI---LSEQLPHIIN 194 (225)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~---~~~~~~~~~~ 194 (225)
++... .+..++||+|+.+.+- ...+++++.+.+.|+|||+++.... ..+....+.+
T Consensus 274 -fl~~~-------~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~ 345 (381)
T 3c6k_A 274 -VLKRY-------AKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEE 345 (381)
T ss_dssp -HHHHH-------HHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHH
T ss_pred -HHHhh-------hhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHH
Confidence 11100 0034679999997421 1135678899999999999987422 1222344455
Q ss_pred HHHhhhhhhcc--------cccCCceEEEeeeec
Q 041459 195 RYSEFLEDILL--------SEMDDWTCVSGTKKR 220 (225)
Q Consensus 195 ~~~~~~~~~~~--------~~~~~w~~~~~~k~~ 220 (225)
.++..|..+.. ...+.|.=..+.|+.
T Consensus 346 tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK~~ 379 (381)
T 3c6k_A 346 QLGRLYCPVEFSKEIVCVPSYLELWVFYTVWKKA 379 (381)
T ss_dssp HHTTSSSCEEEEEEEECCGGGSSCEEEEEEEECC
T ss_pred HHHHhCCcceEeeEEEEecCCCCceeeeEEECCC
Confidence 55554432221 123679766666653
No 284
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=98.56 E-value=5e-08 Score=81.60 Aligned_cols=123 Identities=12% Similarity=0.077 Sum_probs=79.8
Q ss_pred ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
++++.+|||+|||+|.++..+++ .+...+.|+|+...+...+.. ..... ..+.....+.+. ..+
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~---~~~~g-~~ii~~~~~~dv---------~~l-- 152 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM---RTTLG-WNLIRFKDKTDV---------FNM-- 152 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC---CCBTT-GGGEEEECSCCG---------GGS--
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc---cccCC-CceEEeeCCcch---------hhc--
Confidence 66788999999999999998874 577789999997643211100 00000 111111111110 011
Q ss_pred ccccccccCCCCCCceeEEEeccchh-------HHH--HHHHHHHHhccCC--eEEEEeccC--CCcHHHHHHHHHhhhh
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLN-------PLL--QLADHIVSYAKPG--AVVGISGIL--SEQLPHIINRYSEFLE 201 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~~--~~l~~~~~~Lkpg--G~l~~~~~~--~~~~~~~~~~~~~~~~ 201 (225)
+..++|+|+|+...+ +.. .+++-+.++|+|| |.+++..+. ..+..++...++..|.
T Consensus 153 -----------~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F~ 221 (282)
T 3gcz_A 153 -----------EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKHG 221 (282)
T ss_dssp -----------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHHC
T ss_pred -----------CCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhcC
Confidence 467899999976543 222 3577778999999 999998887 7778888888887775
Q ss_pred hhc
Q 041459 202 DIL 204 (225)
Q Consensus 202 ~~~ 204 (225)
.+.
T Consensus 222 ~V~ 224 (282)
T 3gcz_A 222 GGL 224 (282)
T ss_dssp CEE
T ss_pred CEE
Confidence 443
No 285
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=98.44 E-value=1.6e-07 Score=78.26 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=61.4
Q ss_pred cCC--CcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC--------CCCCcceEEEecCCCCCcccc
Q 041459 57 KGG--ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN--------IGPKKMKLHLVPDRTFPASMN 126 (225)
Q Consensus 57 ~~~--~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 126 (225)
+++ .+|||+|||+|..++.+++.+. +|+++|+++.+.+.++.++.... +. .++++...+...+
T Consensus 85 ~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~-~~i~~~~~D~~~~----- 157 (258)
T 2oyr_A 85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQ-ERLQLIHASSLTA----- 157 (258)
T ss_dssp BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHH-HHEEEEESCHHHH-----
T ss_pred cCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhh-cCEEEEECCHHHH-----
Confidence 456 8999999999999999998866 59999999988777776654221 11 2345555443211
Q ss_pred ccccccccccccccccCCCCCCceeEEEeccchhHH--HHHHHHHHHhccCC
Q 041459 127 ERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL--LQLADHIVSYAKPG 176 (225)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~--~~~l~~~~~~Lkpg 176 (225)
++. ....||+|+++|++... ...+++..+.|++.
T Consensus 158 --------------L~~--~~~~fDvV~lDP~y~~~~~saavkk~~~~lr~l 193 (258)
T 2oyr_A 158 --------------LTD--ITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSL 193 (258)
T ss_dssp --------------STT--CSSCCSEEEECCCCCCCCC-----HHHHHHHHH
T ss_pred --------------HHh--CcccCCEEEEcCCCCCcccchHHHHHHHHHHHh
Confidence 011 12369999999998542 12334444555443
No 286
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=98.34 E-value=5.9e-06 Score=69.52 Aligned_cols=124 Identities=11% Similarity=0.122 Sum_probs=79.3
Q ss_pred hccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 55 LIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 55 ~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++++.+|||+||++|.++..+++ .+...+.|+|+...+...... ..... ..+.......+..
T Consensus 78 l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~---~~~~~-~~iv~~~~~~di~------------ 141 (300)
T 3eld_A 78 YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH---MQTLG-WNIVKFKDKSNVF------------ 141 (300)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC---CCBTT-GGGEEEECSCCTT------------
T ss_pred CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc---ccccC-CceEEeecCceee------------
Confidence 456789999999999999999997 477789999997532100000 00000 0111111111111
Q ss_pred cccccccccCCCCCCceeEEEeccchh-------HH--HHHHHHHHHhccCC-eEEEEeccC--CCcHHHHHHHHHhhhh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLN-------PL--LQLADHIVSYAKPG-AVVGISGIL--SEQLPHIINRYSEFLE 201 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~--~~~l~~~~~~Lkpg-G~l~~~~~~--~~~~~~~~~~~~~~~~ 201 (225)
.+ ....+|+|+|+...+ ++ ..+++-+.++|+|| |.+++..+. ..+..++...++..|.
T Consensus 142 ---------~l-~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~F~ 211 (300)
T 3eld_A 142 ---------TM-PTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFG 211 (300)
T ss_dssp ---------TS-CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHHHC
T ss_pred ---------ec-CCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHhCC
Confidence 00 456899999976543 22 23477778999999 999998787 7777888888887775
Q ss_pred hhc
Q 041459 202 DIL 204 (225)
Q Consensus 202 ~~~ 204 (225)
.+.
T Consensus 212 ~V~ 214 (300)
T 3eld_A 212 GGI 214 (300)
T ss_dssp CEE
T ss_pred cEE
Confidence 443
No 287
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.21 E-value=5.6e-06 Score=68.77 Aligned_cols=143 Identities=13% Similarity=0.064 Sum_probs=78.7
Q ss_pred CCCcEEEEcccccHHHHHHHh--------cCC-----CeEEEEeCCH---HHHH-----------HHHHHHHhcC-----
Q 041459 58 GGELFLDYGTGSGILGIAAIK--------FGA-----AMSVGVDIDP---QAIK-----------SAHQNAALNN----- 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~--------~~~-----~~v~~vDi~~---~~l~-----------~a~~~~~~~~----- 105 (225)
++.+|||+|+|+|..++.+++ .+. .+++++|..| +.+. .|+.++....
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 346999999999988876543 232 4799999887 4444 4555544311
Q ss_pred -----CCC--CcceEEEecCCCCCccccccccccccccccccccCCCC--CCceeEEEecc--ch-h---HHHHHHHHHH
Q 041459 106 -----IGP--KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISE--TEKYDVVIANI--LL-N---PLLQLADHIV 170 (225)
Q Consensus 106 -----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~DvIi~~~--~~-~---~~~~~l~~~~ 170 (225)
+.. ..+++..+|+.. .+ +.... ...||+|+.++ +- + +..++++.+.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~-------~l------------~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~ 200 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINE-------LI------------SQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMA 200 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHH-------HG------------GGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHH
T ss_pred hhheeccCCceEEEEEECcHHH-------HH------------hhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHH
Confidence 111 123333333211 11 11101 13799999974 21 1 2467899999
Q ss_pred HhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhccc-ccCCceEEEeeeecccc
Q 041459 171 SYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILLS-EMDDWTCVSGTKKRAKE 223 (225)
Q Consensus 171 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~w~~~~~~k~~~~~ 223 (225)
+.|+|||+++.- .. ...+++.+... |...... ..+.+..+.++|+....
T Consensus 201 ~~L~pGG~l~ty--sa--a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~~~~~~ 251 (257)
T 2qy6_A 201 RLARPGGTLATF--TS--AGFVRRGLQEAGFTMQKRKGFGRKREMLCGVMEQTEG 251 (257)
T ss_dssp HHEEEEEEEEES--CC--BHHHHHHHHHHTEEEEEECCSTTCCCEEEEEEC----
T ss_pred HHcCCCcEEEEE--eC--CHHHHHHHHHCCCEEEeCCCCCCCCceEEEEecCccc
Confidence 999999998752 22 12455555544 5433221 22345667777766544
No 288
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=98.14 E-value=2.3e-06 Score=70.68 Aligned_cols=118 Identities=10% Similarity=0.087 Sum_probs=66.5
Q ss_pred hccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCC--Ccce-EEEecC-CCCCccccccc
Q 041459 55 LIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGP--KKMK-LHLVPD-RTFPASMNERV 129 (225)
Q Consensus 55 ~~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~--~~~~-~~~~~~-~~~~~~~~~~~ 129 (225)
+++++.+|+|+||++|..+.++++. +...+.|.++.... ...+... ..+. +.+..+ +.+.
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~--------~~~P~~~~~~Gv~~i~~~~G~Df~~------- 134 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG--------HEEPMLMQSYGWNIVTMKSGVDVFY------- 134 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT--------SCCCCCCCSTTGGGEEEECSCCGGG-------
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc--------ccCCCcccCCCceEEEeeccCCccC-------
Confidence 4778999999999999999998875 23333344432210 0111110 0011 112222 1110
Q ss_pred cccccccccccccCCCCCCceeEEEeccch-------hHHH--HHHHHHHHhccCCe-EEEEeccCC--CcHHHHHHHHH
Q 041459 130 DGIVEDLSSHEIRGISETEKYDVVIANILL-------NPLL--QLADHIVSYAKPGA-VVGISGILS--EQLPHIINRYS 197 (225)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~-------~~~~--~~l~~~~~~LkpgG-~l~~~~~~~--~~~~~~~~~~~ 197 (225)
+ ...++|+|+|+... ++.+ ..++-+.++|+||| .+++-.+.. .+..++.+.++
T Consensus 135 --~-------------~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk 199 (269)
T 2px2_A 135 --K-------------PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQ 199 (269)
T ss_dssp --S-------------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHH
T ss_pred --C-------------CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHH
Confidence 0 45579999997542 2221 24666778999999 888876663 33334445666
Q ss_pred hhhhh
Q 041459 198 EFLED 202 (225)
Q Consensus 198 ~~~~~ 202 (225)
..|..
T Consensus 200 ~~F~~ 204 (269)
T 2px2_A 200 RRFGG 204 (269)
T ss_dssp HHHCC
T ss_pred HHcCC
Confidence 55543
No 289
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=98.09 E-value=2.8e-06 Score=71.28 Aligned_cols=101 Identities=11% Similarity=0.139 Sum_probs=71.5
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
.+..+||+.+|||.+++.+.+ +..+++.+|.++..++..++|+.. .+++.+...|+.. .+..+
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~----~~~~~V~~~D~~~-------~L~~l----- 153 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHF----NKKVYVNHTDGVS-------KLNAL----- 153 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCT----TSCEEEECSCHHH-------HHHHH-----
T ss_pred cCCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCc----CCcEEEEeCcHHH-------HHHHh-----
Confidence 467799999999999999888 458899999999999999888754 1345555443211 01111
Q ss_pred cccccCCCCCCceeEEEeccchh---HHHHHHHHHHH--hccCCeEEEE
Q 041459 138 SHEIRGISETEKYDVVIANILLN---PLLQLADHIVS--YAKPGAVVGI 181 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~---~~~~~l~~~~~--~LkpgG~l~~ 181 (225)
..+..+||+|+++|||+ .+..+++.+.+ .+.++|++++
T Consensus 154 ------~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~ 196 (283)
T 2oo3_A 154 ------LPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV 196 (283)
T ss_dssp ------CSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred ------cCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence 11345799999999996 45666655554 4678888776
No 290
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=98.06 E-value=8.4e-06 Score=68.88 Aligned_cols=57 Identities=28% Similarity=0.370 Sum_probs=46.7
Q ss_pred HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459 47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN 104 (225)
Q Consensus 47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~ 104 (225)
++..++.....++..|||+|||+|++++.+++.+. +++|+|+++.+++.|++++...
T Consensus 224 l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 224 LAERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp HHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 33444444445789999999999999999888864 6999999999999999998754
No 291
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.03 E-value=2.3e-05 Score=59.38 Aligned_cols=45 Identities=18% Similarity=0.083 Sum_probs=34.6
Q ss_pred HHHhhccCCCcEEEEccccc-HHHHHHHhcCCCeEEEEeCCHHHHH
Q 041459 51 LLQSLIKGGELFLDYGTGSG-ILGIAAIKFGAAMSVGVDIDPQAIK 95 (225)
Q Consensus 51 ~L~~~~~~~~~vlDiGcGtG-~~~~~l~~~~~~~v~~vDi~~~~l~ 95 (225)
.+.....++.+|||+|||+| ..+..+++...-.|+++|+++.+++
T Consensus 28 YI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~ 73 (153)
T 2k4m_A 28 YIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG 73 (153)
T ss_dssp HHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT
T ss_pred HHHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc
Confidence 33334455789999999999 6999999733345999999997765
No 292
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=98.01 E-value=3e-05 Score=65.14 Aligned_cols=118 Identities=8% Similarity=0.011 Sum_probs=68.6
Q ss_pred ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe-cCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV-PDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 133 (225)
++++.+|+|+||++|.++.+++. .++.+|+|+|+...--+.-+ .....+.. .+.+... +...+
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w~--lV~~~~~~Dv~~l------------ 156 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGWN--IVTMKSGVDVFYR------------ 156 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTGG--GEEEECSCCTTSS------------
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCCc--ceEEEeccCHhhC------------
Confidence 66788999999999999997665 57788999999763110000 00001111 1222211 11111
Q ss_pred cccccccccCCCCCCceeEEEeccch-------hHH--HHHHHHHHHhccCC-eEEEEeccCC--CcHHHHHHHHHhhh
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILL-------NPL--LQLADHIVSYAKPG-AVVGISGILS--EQLPHIINRYSEFL 200 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~-------~~~--~~~l~~~~~~Lkpg-G~l~~~~~~~--~~~~~~~~~~~~~~ 200 (225)
+..++|+|+|+..- +.. ...++-+.++|++| |-+|+-.+.. .+..+..+.++..|
T Consensus 157 ------------~~~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~f 223 (321)
T 3lkz_A 157 ------------PSECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRRY 223 (321)
T ss_dssp ------------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred ------------CCCCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHHh
Confidence 34679999996541 111 23577778999999 8888854433 34434444455444
No 293
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=97.97 E-value=1.6e-05 Score=65.84 Aligned_cols=60 Identities=25% Similarity=0.316 Sum_probs=47.5
Q ss_pred HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 041459 46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI 106 (225)
Q Consensus 46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~ 106 (225)
.++..++.....+|..|||.+||+|+.++.+.+.+ .+++|+|+++.+++.|++++..+++
T Consensus 200 ~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~g-r~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHhccC
Confidence 34444554445678999999999999999988886 5699999999999999999876553
No 294
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.97 E-value=1.9e-05 Score=66.25 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=57.7
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++++..++|.+||.|..+..+++. ..+++|+|.++.+++.|++ +.. +++.+...+...+ ...+..
T Consensus 20 ~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~-----~rv~lv~~~f~~l--------~~~L~~ 84 (285)
T 1wg8_A 20 VRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL-----PGLTVVQGNFRHL--------KRHLAA 84 (285)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC-----TTEEEEESCGGGH--------HHHHHH
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc-----CCEEEEECCcchH--------HHHHHH
Confidence 457889999999999999998887 5689999999999999987 532 2355554433221 111110
Q ss_pred cccccccCCCCCCceeEEEeccchhH
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNP 161 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~ 161 (225)
. ...++|.|+++..+..
T Consensus 85 ~---------g~~~vDgIL~DLGvSS 101 (285)
T 1wg8_A 85 L---------GVERVDGILADLGVSS 101 (285)
T ss_dssp T---------TCSCEEEEEEECSCCH
T ss_pred c---------CCCCcCEEEeCCcccc
Confidence 0 2357999999877654
No 295
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.93 E-value=0.00011 Score=60.05 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=69.3
Q ss_pred hccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe-cCCCCCcccccccccc
Q 041459 55 LIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV-PDRTFPASMNERVDGI 132 (225)
Q Consensus 55 ~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 132 (225)
.++++.+|+|+||++|.++.+++. .++.+|+|+|+.+.-.+.-+ .....+.+ .+.+... |....
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gwn--~v~fk~gvDv~~~----------- 140 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGWN--IVKLMSGKDVFYL----------- 140 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTTT--SEEEECSCCGGGC-----------
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCcC--ceEEEeccceeec-----------
Confidence 367888999999999999997665 57788999999763210000 00111222 1333322 11111
Q ss_pred ccccccccccCCCCCCceeEEEeccch-------hHH--HHHHHHHHHhccCCeEEEEeccCCCc--HHHHHHHHHhhh
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILL-------NPL--LQLADHIVSYAKPGAVVGISGILSEQ--LPHIINRYSEFL 200 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~-------~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~ 200 (225)
+..++|+|+|+..- +.. ...++-+.++|++ |-+|+-.+.... ..+..+.++..|
T Consensus 141 -------------~~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~lq~~f 205 (267)
T 3p8z_A 141 -------------PPEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERLQRKH 205 (267)
T ss_dssp -------------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHHHHHH
T ss_pred -------------CCccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHHHHHh
Confidence 45779999996432 111 2357777899999 777775444333 334444445444
No 296
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=97.86 E-value=6.8e-05 Score=65.68 Aligned_cols=107 Identities=13% Similarity=-0.039 Sum_probs=64.2
Q ss_pred CCcEEEEcccccHHHHHHHhc------------------CCCeEEEEeCC-----------HHHHHHHHHHHHhcCCCCC
Q 041459 59 GELFLDYGTGSGILGIAAIKF------------------GAAMSVGVDID-----------PQAIKSAHQNAALNNIGPK 109 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~------------------~~~~v~~vDi~-----------~~~l~~a~~~~~~~~~~~~ 109 (225)
..+|+|+||++|..++.+... +.-+++..|+- +...+.+++ ..+....
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence 468999999999888765422 23457888876 444333322 1221101
Q ss_pred cceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHH--------------------------
Q 041459 110 KMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLL-------------------------- 163 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~-------------------------- 163 (225)
..+..+.+..+. ..+.+.+++|+|+++..++++.
T Consensus 130 -~~f~~gvpgSFy-------------------~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp 189 (384)
T 2efj_A 130 -SCLIGAMPGSFY-------------------SRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASR 189 (384)
T ss_dssp -SEEEEECCSCTT-------------------SCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSC
T ss_pred -ceEEEecchhhh-------------------hccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCC
Confidence 123333333321 1223788999999988876521
Q ss_pred ----------------HHHHHHHHhccCCeEEEEeccCCCc
Q 041459 164 ----------------QLADHIVSYAKPGAVVGISGILSEQ 188 (225)
Q Consensus 164 ----------------~~l~~~~~~LkpgG~l~~~~~~~~~ 188 (225)
.+++...+.|+|||.++++..+..+
T Consensus 190 ~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~ 230 (384)
T 2efj_A 190 PPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKED 230 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCC
Confidence 1255558999999999997665443
No 297
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=97.86 E-value=4.7e-05 Score=66.51 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=32.4
Q ss_pred CCCceeEEEeccchhHH-----------------------------------------HHHHHHHHHhccCCeEEEEecc
Q 041459 146 ETEKYDVVIANILLNPL-----------------------------------------LQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 146 ~~~~~DvIi~~~~~~~~-----------------------------------------~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+.+++|+|+++..++++ ..+++..++.|+|||.++++..
T Consensus 147 P~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 147 PARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCL 226 (374)
T ss_dssp CTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 68899999998776652 2347778999999999999755
Q ss_pred CC
Q 041459 185 LS 186 (225)
Q Consensus 185 ~~ 186 (225)
+.
T Consensus 227 gr 228 (374)
T 3b5i_A 227 GR 228 (374)
T ss_dssp EC
T ss_pred cC
Confidence 44
No 298
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=97.84 E-value=0.0001 Score=63.26 Aligned_cols=43 Identities=26% Similarity=0.327 Sum_probs=38.0
Q ss_pred ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHH
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAH 98 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~ 98 (225)
+++|..++|..||.|..+..+++. +..+++|+|.++.+++.|+
T Consensus 55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~ 99 (347)
T 3tka_A 55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 99 (347)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 467899999999999999998864 4678999999999999884
No 299
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.71 E-value=0.00044 Score=60.10 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=31.1
Q ss_pred ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCH
Q 041459 56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDP 91 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~ 91 (225)
+++|++++|+||++|..+..+++.+ .+|+|||..+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg-~~V~aVD~~~ 243 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRN-MWVYSVDNGP 243 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTT-CEEEEECSSC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCC-CEEEEEEhhh
Confidence 5689999999999999999999886 4799999865
No 300
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=97.60 E-value=0.00032 Score=58.97 Aligned_cols=106 Identities=10% Similarity=0.152 Sum_probs=64.9
Q ss_pred ccCCCcEEEEcc------cccHHHHHHHhc-CC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459 56 IKGGELFLDYGT------GSGILGIAAIKF-GA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 56 ~~~~~~vlDiGc------GtG~~~~~l~~~-~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
+..+++|||+|+ .+|.. .+.+. +. ..++++|+.+-. ... + ....+|....
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~-----------sda-~--~~IqGD~~~~------ 164 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV-----------SDA-D--STLIGDCATV------ 164 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB-----------CSS-S--EEEESCGGGE------
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc-----------cCC-C--eEEEcccccc------
Confidence 456899999997 56773 33333 33 389999998822 111 1 1233332211
Q ss_pred cccccccccccccccCCCCCCceeEEEeccchhH-------------HH-HHHHHHHHhccCCeEEEEeccCCCcHHHHH
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-------------LL-QLADHIVSYAKPGAVVGISGILSEQLPHII 193 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------~~-~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 193 (225)
....+||+|++++.... +. .+++-+.+.|+|||.+++-.+..+..+.+.
T Consensus 165 -----------------~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L~ 227 (344)
T 3r24_A 165 -----------------HTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLY 227 (344)
T ss_dssp -----------------EESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHH
T ss_pred -----------------ccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHHH
Confidence 13578999999754311 33 345666788999999999888776644444
Q ss_pred HHHHhhhh
Q 041459 194 NRYSEFLE 201 (225)
Q Consensus 194 ~~~~~~~~ 201 (225)
+ +++.|.
T Consensus 228 ~-lrk~F~ 234 (344)
T 3r24_A 228 K-LMGHFS 234 (344)
T ss_dssp H-HHTTEE
T ss_pred H-HHhhCC
Confidence 4 334443
No 301
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=97.37 E-value=0.00011 Score=63.83 Aligned_cols=107 Identities=11% Similarity=0.024 Sum_probs=67.0
Q ss_pred CcEEEEcccccHHHHHHHhc-----------------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCC
Q 041459 60 ELFLDYGTGSGILGIAAIKF-----------------GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~~l~~~-----------------~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (225)
.+|+|+||++|..++.+... +..+++..|+-.+....+-+.+.... ......+..+.+..+.
T Consensus 53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-DVDGVCFINGVPGSFY 131 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-SCTTCEEEEEEESCSS
T ss_pred eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-ccCCCEEEEecchhhh
Confidence 57999999999766543221 23568899988888877766554311 1001122222222221
Q ss_pred ccccccccccccccccccccCCCCCCceeEEEeccchhHH------------------------------------HHHH
Q 041459 123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL------------------------------------LQLA 166 (225)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~------------------------------------~~~l 166 (225)
.++.+.+++|+++++..++++ ..++
T Consensus 132 -------------------~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL 192 (359)
T 1m6e_X 132 -------------------GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFL 192 (359)
T ss_dssp -------------------SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHH
T ss_pred -------------------hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 122378899999998776542 2347
Q ss_pred HHHHHhccCCeEEEEeccCC
Q 041459 167 DHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 167 ~~~~~~LkpgG~l~~~~~~~ 186 (225)
+..++.|+|||.++++..+.
T Consensus 193 ~~Ra~EL~pGG~mvl~~~gr 212 (359)
T 1m6e_X 193 RCRAQEVVPGGRMVLTILGR 212 (359)
T ss_dssp HHHHHHBCTTCEEEEEEEEC
T ss_pred HHHHHHhcCCceEEEEEecC
Confidence 77899999999999865543
No 302
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=97.17 E-value=0.0021 Score=54.96 Aligned_cols=44 Identities=25% Similarity=0.207 Sum_probs=40.0
Q ss_pred CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
+.+++|++||.|.+++.+.+.|...+.++|+++.+++..+.|..
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~ 54 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG 54 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC
Confidence 57899999999999999988898889999999999999888864
No 303
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=97.14 E-value=0.00072 Score=57.70 Aligned_cols=60 Identities=22% Similarity=0.281 Sum_probs=48.3
Q ss_pred HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 041459 46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI 106 (225)
Q Consensus 46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~ 106 (225)
.++..++.....+|..|||.+||+|+.+..+.+.+ .+++|+|+++...+.+++++...+.
T Consensus 240 ~l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~g-r~~ig~e~~~~~~~~~~~r~~~~~~ 299 (323)
T 1boo_A 240 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLDNNI 299 (323)
T ss_dssp HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHhccc
Confidence 44444554445689999999999999999988886 5699999999999999988765543
No 304
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=97.11 E-value=0.0026 Score=55.46 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=38.4
Q ss_pred CcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 60 ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
.+++|++||.|.+++.+.+.|...+.++|+++.+++..+.|..
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~ 45 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP 45 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC
Confidence 5799999999999999888888888999999999988887753
No 305
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=96.98 E-value=0.0012 Score=56.26 Aligned_cols=58 Identities=24% Similarity=0.290 Sum_probs=44.7
Q ss_pred HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCH---HHHHHHHHHHHhcC
Q 041459 47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDP---QAIKSAHQNAALNN 105 (225)
Q Consensus 47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~---~~l~~a~~~~~~~~ 105 (225)
++..++.....+|..|||.+||+|+.+..+.+.+ .+++|+|+++ ..++.+++++...+
T Consensus 231 l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~-r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 231 VIERLVRALSHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp HHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHcC-CcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 3344444445678999999999999999988886 5699999999 99999998886554
No 306
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=96.89 E-value=0.00084 Score=57.79 Aligned_cols=44 Identities=18% Similarity=0.102 Sum_probs=38.7
Q ss_pred CCcEEEEcccccHHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHH
Q 041459 59 GELFLDYGTGSGILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
..+++|++||.|.+++.+.+.| ...++++|+++.+++..+.|..
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~ 47 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP 47 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc
Confidence 3579999999999999988887 4579999999999999998864
No 307
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=96.71 E-value=0.02 Score=49.42 Aligned_cols=55 Identities=11% Similarity=-0.053 Sum_probs=43.7
Q ss_pred CCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC
Q 041459 59 GELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD 118 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 118 (225)
+..|||+|.|.|.++..+++. ...+++++|+++..+...+... . .+++.+...|.
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~----~~~l~ii~~D~ 114 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E----GSPLQILKRDP 114 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T----TSSCEEECSCT
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c----CCCEEEEECCc
Confidence 589999999999999998875 4578999999999998887765 1 13466666555
No 308
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=96.64 E-value=0.011 Score=48.77 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=40.6
Q ss_pred CCCceeEEEeccch-hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhh
Q 041459 146 ETEKYDVVIANILL-NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFL 200 (225)
Q Consensus 146 ~~~~~DvIi~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 200 (225)
+..++|+++++.-. ......++.+...|+|||++++-++.....+...+.+.+++
T Consensus 179 ~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~w~G~~~A~~ef~ 234 (257)
T 3tos_A 179 PQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPKWPGENIAMRKVL 234 (257)
T ss_dssp TTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTTCTTCTHHHHHHHHHT
T ss_pred CCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCCCCCChHHHHHHHHHH
Confidence 35579999997754 45677899999999999999998765434445555565554
No 309
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=96.60 E-value=0.01 Score=50.25 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=37.1
Q ss_pred CcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 60 ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
++|+|++||.|.++.-+.+.|..-+.++|+++.+.+.-+.|.
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~ 42 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH 42 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC
Confidence 469999999999999888888888899999999988887774
No 310
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=96.43 E-value=0.0063 Score=52.44 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=64.6
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-+|+|. |.+++.+++ .|..+|+++|.++..++.+++. +.. .........+ .+.+...
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~----~vi~~~~~~~----~~~~~~~- 254 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT----HVINSKTQDP----VAAIKEI- 254 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS----EEEETTTSCH----HHHHHHH-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC----EEecCCccCH----HHHHHHh-
Confidence 56789999999876 677777666 5776899999999988888643 321 1111111111 0111111
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
..+.+|+|+..... ...++.+.+.|+++|.+++...
T Consensus 255 ------------~~gg~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 255 ------------TDGGVNFALESTGS---PEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp ------------TTSCEEEEEECSCC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred ------------cCCCCcEEEECCCC---HHHHHHHHHHHhcCCEEEEeCC
Confidence 12379999875543 2346778889999999988544
No 311
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=96.27 E-value=0.028 Score=47.55 Aligned_cols=150 Identities=11% Similarity=0.027 Sum_probs=82.8
Q ss_pred eeecCceEEeeCCCCC-CCCcceeEEeccccee-cC--CCCch-HHHHHHHH-H-hhccCCCcEEEEccc--ccHHHHHH
Q 041459 6 VEVTKGLWIVPEWSTP-PDVQATNIILNPGLAF-GT--GEHAT-TKLCLLLL-Q-SLIKGGELFLDYGTG--SGILGIAA 76 (225)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f-~~--~~~~~-~~~~~~~L-~-~~~~~~~~vlDiGcG--tG~~~~~l 76 (225)
|.++.+......|.++ .......+.+++++.+ .. ..-+. ..-....| . ..+++|++||-.|++ .|..+..+
T Consensus 90 ~~vGdrV~~~G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~ 169 (336)
T 4b7c_A 90 FQAGDYVNGALGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQI 169 (336)
T ss_dssp CCTTCEEEEECCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHH
T ss_pred CCCCCEEeccCCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 4455555555566664 2233356667766532 11 11111 11122233 2 236678999999983 36666666
Q ss_pred Hh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEe
Q 041459 77 IK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIA 155 (225)
Q Consensus 77 ~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~ 155 (225)
++ .|+ ++++++.++..++.+.+. .+.. .........+ .+.+... ..+.+|+++.
T Consensus 170 a~~~Ga-~Vi~~~~~~~~~~~~~~~---~g~~----~~~~~~~~~~----~~~~~~~-------------~~~~~d~vi~ 224 (336)
T 4b7c_A 170 ARLKGC-RVVGIAGGAEKCRFLVEE---LGFD----GAIDYKNEDL----AAGLKRE-------------CPKGIDVFFD 224 (336)
T ss_dssp HHHTTC-EEEEEESSHHHHHHHHHT---TCCS----EEEETTTSCH----HHHHHHH-------------CTTCEEEEEE
T ss_pred HHHCCC-EEEEEeCCHHHHHHHHHH---cCCC----EEEECCCHHH----HHHHHHh-------------cCCCceEEEE
Confidence 65 455 899999999887776322 2321 1111111111 1111111 2357999998
Q ss_pred ccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 156 NILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 156 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+..- ..+..+.+.|+++|.++..+.
T Consensus 225 ~~g~----~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 225 NVGG----EILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp SSCH----HHHHHHHTTEEEEEEEEECCC
T ss_pred CCCc----chHHHHHHHHhhCCEEEEEee
Confidence 6653 357788899999999987543
No 312
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=96.25 E-value=0.0078 Score=52.58 Aligned_cols=105 Identities=17% Similarity=0.137 Sum_probs=63.1
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||=+|+|. |.+++.+++ .|+.+|+++|.++.-++.+++. +.. .+.......+ .+.+..
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~----~vi~~~~~~~----~~~i~~-- 276 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD----HVIDPTKENF----VEAVLD-- 276 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS----EEECTTTSCH----HHHHHH--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC----EEEcCCCCCH----HHHHHH--
Confidence 56789999999865 666666665 5776899999999988888643 321 1111111111 111111
Q ss_pred cccccccccCCCCCCceeEEEeccchh--HHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
......+|+|+-...-. ....+++.+.+.++++|.+++.+.
T Consensus 277 ----------~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 277 ----------YTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp ----------HTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred ----------HhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 11345799998765443 233333434455599999988544
No 313
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=96.10 E-value=0.0076 Score=51.50 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=63.6
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-+|+|. |.+++.+++ .|..+|+++|.++..++.+++. +.. .........+ .+.+.
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~----~vi~~~~~~~----~~~v~--- 228 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GAT----DIINYKNGDI----VEQIL--- 228 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCC----EEECGGGSCH----HHHHH---
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc----eEEcCCCcCH----HHHHH---
Confidence 56899999999876 677777666 4666899999999888887653 322 1111111111 01111
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
.......+|+|+-..... ..+..+.++|+++|.++...
T Consensus 229 ---------~~t~g~g~D~v~d~~g~~---~~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 229 ---------KATDGKGVDKVVIAGGDV---HTFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp ---------HHTTTCCEEEEEECSSCT---THHHHHHHHEEEEEEEEECC
T ss_pred ---------HHcCCCCCCEEEECCCCh---HHHHHHHHHHhcCCEEEEec
Confidence 111345799998654331 34667778999999998754
No 314
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=96.02 E-value=0.0055 Score=52.40 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=38.3
Q ss_pred CCCcEEEEcccccHHHHHHHhcCC--CeE-EEEeCCHHHHHHHHHHHH
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGA--AMS-VGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~--~~v-~~vDi~~~~l~~a~~~~~ 102 (225)
...+++|++||.|.++..+.+.|. ..+ .++|+++.+.+..+.|..
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~ 56 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK 56 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC
Confidence 456899999999999998888774 567 799999999998888864
No 315
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=95.77 E-value=0.038 Score=47.96 Aligned_cols=105 Identities=19% Similarity=0.306 Sum_probs=65.1
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-+|+|. |.+++.+++ .|..+|+++|.++..++.+++ .+. .........+ +.+.+...
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa-----~~i~~~~~~~---~~~~~~~~- 249 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF-----ETIDLRNSAP---LRDQIDQI- 249 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC-----EEEETTSSSC---HHHHHHHH-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC-----cEEcCCCcch---HHHHHHHH-
Confidence 56789999999876 777777776 577689999999988877753 231 1111111110 00111111
Q ss_pred cccccccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.....+|+|+-...-.. ....+..+.++|+++|++++.+.
T Consensus 250 -----------~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~ 300 (398)
T 2dph_A 250 -----------LGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI 300 (398)
T ss_dssp -----------HSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred -----------hCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence 12346999987554321 12357778899999999987544
No 316
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=95.73 E-value=0.032 Score=48.04 Aligned_cols=104 Identities=22% Similarity=0.226 Sum_probs=64.2
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-.|+|. |.+++.+++ .|+.+|+++|.++..++.+++. +.. .........+ .+.+...
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~----~vi~~~~~~~----~~~i~~~- 246 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GAT----ATVDPSAGDV----VEAIAGP- 246 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS----EEECTTSSCH----HHHHHST-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC----EEECCCCcCH----HHHHHhh-
Confidence 56899999999875 666776665 5777899999999988877653 322 1111111110 0111110
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
... ..+.+|+|+-.... ...+..+.++|++||.+++.+.
T Consensus 247 --------~~~-~~gg~Dvvid~~G~---~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 247 --------VGL-VPGGVDVVIECAGV---AETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp --------TSS-STTCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECSC
T ss_pred --------hhc-cCCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEEec
Confidence 001 23379999875432 2356678889999999988544
No 317
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=95.73 E-value=0.14 Score=43.69 Aligned_cols=106 Identities=18% Similarity=0.162 Sum_probs=65.3
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-.|+|. |.+++.+++ .|+..|+++|.++..++.+++. .... +.... +. ....++.+.+
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~-----~~~~~-~~-~~~~~~~~~v---- 244 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEV-----VTHKV-ER-LSAEESAKKI---- 244 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTC-----EEEEC-CS-CCHHHHHHHH----
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhc-----ccccc-cc-cchHHHHHHH----
Confidence 56789999999875 677777666 5776799999999999888764 2111 11111 10 0000000111
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
........+|+++-...-. ..+..+.++|+++|.+++.+.
T Consensus 245 --------~~~t~g~g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 245 --------VESFGGIEPAVALECTGVE---SSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp --------HHHTSSCCCSEEEECSCCH---HHHHHHHHHSCTTCEEEECCC
T ss_pred --------HHHhCCCCCCEEEECCCCh---HHHHHHHHHhcCCCEEEEEcc
Confidence 1111355799998754432 346677889999999998644
No 318
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=95.72 E-value=0.034 Score=46.93 Aligned_cols=100 Identities=20% Similarity=0.231 Sum_probs=60.2
Q ss_pred ccCCCcEEEEccc--ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGTG--SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcG--tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
++++++||-.|++ .|..+..+++ .|. +++++|.++..++.+++ .+.. ..+...+...+ .+.+...
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~----~~~~~~~ 210 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGFD---AAFNYKTVNSL----EEALKKA 210 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTSCSCH----HHHHHHH
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCc---EEEecCCHHHH----HHHHHHH
Confidence 5678999999983 4555555554 565 79999999988877732 2321 11111110111 0111111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
..+.+|+++.+... ..+..+.++|+++|.+++.+.
T Consensus 211 -------------~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 211 -------------SPDGYDCYFDNVGG----EFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp -------------CTTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECCC
T ss_pred -------------hCCCCeEEEECCCh----HHHHHHHHHHhcCCEEEEEec
Confidence 12479999987653 246778899999999987543
No 319
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=95.68 E-value=0.075 Score=45.34 Aligned_cols=104 Identities=18% Similarity=0.230 Sum_probs=63.3
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-+|+|. |.+++.+++ .|..+++++|.++..++.+++ .+.. .......... . +....+
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~~-~---~~~~~i- 235 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD----LVLQISKESP-Q---EIARKV- 235 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS----EEEECSSCCH-H---HHHHHH-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC----EEEcCccccc-c---hHHHHH-
Confidence 56789999999875 677777666 566689999999988887763 2322 1111110000 0 000000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
..... ..+|+|+-..... ..+..+.++|+++|.++..+.
T Consensus 236 --------~~~~~-~g~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 236 --------EGQLG-CKPEVTIECTGAE---ASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp --------HHHHT-SCCSEEEECSCCH---HHHHHHHHHSCTTCEEEECSC
T ss_pred --------HHHhC-CCCCEEEECCCCh---HHHHHHHHHhcCCCEEEEEec
Confidence 00012 5699998755432 345677889999999988554
No 320
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=95.66 E-value=0.018 Score=48.53 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=37.7
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCe--EEEEeCCHHHHHHHHHHH
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAM--SVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~--v~~vDi~~~~l~~a~~~~ 101 (225)
.+.+++|++||.|.++..+.+.|... +.++|+++.+.+..+.|.
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~ 60 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH 60 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT
T ss_pred CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC
Confidence 46699999999999999888888765 799999999888777664
No 321
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=95.34 E-value=0.061 Score=46.30 Aligned_cols=103 Identities=18% Similarity=0.291 Sum_probs=63.7
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-+|+|. |.+++.+++ .|+.+|+++|.++.-++.+++ .+.. ......... .++.+.+...
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~--~~~~~~i~~~- 259 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN----EFVNPKDHD--KPIQEVIVDL- 259 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC----EEECGGGCS--SCHHHHHHHH-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc----EEEccccCc--hhHHHHHHHh-
Confidence 56789999999875 667776665 577789999999988887753 3322 111111000 0111111111
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC-eEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 184 (225)
..+.+|+++-.... ...+..+.+.|++| |++++...
T Consensus 260 ------------~~gg~D~vid~~g~---~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 260 ------------TDGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp ------------TTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred ------------cCCCCCEEEECCCC---HHHHHHHHHHhhccCCEEEEEcc
Confidence 22379999875443 23467788899996 99887544
No 322
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=95.23 E-value=0.022 Score=48.25 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=63.7
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
.++|++|+=.|+|. |.+++.+++ .|...++++|.++.-++.|++ .|.. .......... .+...
T Consensus 158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~----~~i~~~~~~~----~~~~~--- 222 (346)
T 4a2c_A 158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAM----QTFNSSEMSA----PQMQS--- 222 (346)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS----EEEETTTSCH----HHHHH---
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCe----EEEeCCCCCH----HHHHH---
Confidence 56789999999876 455666555 578888999999988888764 3322 1111111111 01111
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
.+.....+|+|+..... ...++...++|+++|.+++....
T Consensus 223 ---------~~~~~~g~d~v~d~~G~---~~~~~~~~~~l~~~G~~v~~g~~ 262 (346)
T 4a2c_A 223 ---------VLRELRFNQLILETAGV---PQTVELAVEIAGPHAQLALVGTL 262 (346)
T ss_dssp ---------HHGGGCSSEEEEECSCS---HHHHHHHHHHCCTTCEEEECCCC
T ss_pred ---------hhcccCCcccccccccc---cchhhhhhheecCCeEEEEEecc
Confidence 11134568888764432 23466777899999999986554
No 323
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=95.18 E-value=0.08 Score=45.42 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=63.2
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-+|+|. |.+++.+++ .|..+|+++|.++..++.+++ .+.+ ......... .++.+.+...
T Consensus 189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~--~~~~~~i~~~- 257 (373)
T 1p0f_A 189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT----ECLNPKDYD--KPIYEVICEK- 257 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS----EEECGGGCS--SCHHHHHHHH-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc----EEEeccccc--chHHHHHHHH-
Confidence 56789999999875 666666665 577689999999988887763 2322 111111000 0000111111
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC-eEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 184 (225)
..+.+|+|+-.... ...+..+.++|+++ |.++....
T Consensus 258 ------------t~gg~Dvvid~~g~---~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 258 ------------TNGGVDYAVECAGR---IETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp ------------TTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred ------------hCCCCCEEEECCCC---HHHHHHHHHHHhcCCCEEEEEcc
Confidence 12379999875433 23466788899999 99987543
No 324
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=95.17 E-value=0.021 Score=48.82 Aligned_cols=43 Identities=23% Similarity=0.206 Sum_probs=36.7
Q ss_pred CcEEEEcccccHHHHHHHhcCC--CeEEEEeCCHHHHHHHHHHHH
Q 041459 60 ELFLDYGTGSGILGIAAIKFGA--AMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~~l~~~~~--~~v~~vDi~~~~l~~a~~~~~ 102 (225)
.+++|++||.|.++..+.+.|. ..+.++|+++.+.+..+.|..
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~ 48 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP 48 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC
Confidence 4799999999999998877775 568999999999988887754
No 325
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=95.15 E-value=0.042 Score=48.24 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=41.3
Q ss_pred cCCCcEEEEcccccHHHHHHH-h-cC-CCeEEEEeCCHHHHHHHHHHHHh
Q 041459 57 KGGELFLDYGTGSGILGIAAI-K-FG-AAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~-~-~~-~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
+++..++|+||+.|..+..++ + .+ ..+|+++|.+|...+..++|+..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 578899999999999999876 4 34 37899999999999999999987
No 326
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=95.14 E-value=0.077 Score=45.53 Aligned_cols=103 Identities=15% Similarity=0.256 Sum_probs=62.8
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-+|+|. |.+++.+++ .|..+|+++|.++..++.+++ .+.. ......... .++.+.+...
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~----~vi~~~~~~--~~~~~~~~~~- 258 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT----DFVNPNDHS--EPISQVLSKM- 258 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC----EEECGGGCS--SCHHHHHHHH-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc----eEEeccccc--hhHHHHHHHH-
Confidence 56789999999865 666666665 566689999999988887763 2322 111111000 0000111111
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC-eEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 184 (225)
..+.+|+|+.+... ...+..+.++|+++ |.++....
T Consensus 259 ------------~~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 259 ------------TNGGVDFSLECVGN---VGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp ------------HTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred ------------hCCCCCEEEECCCC---HHHHHHHHHHhhcCCcEEEEEcC
Confidence 12379999875543 23466788899999 99987544
No 327
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=95.11 E-value=0.097 Score=44.84 Aligned_cols=103 Identities=19% Similarity=0.258 Sum_probs=62.9
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-+|+|. |.+++.+++ .|..+++++|.++..++.+++. +.. ......... .++.+.+...
T Consensus 188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~----~vi~~~~~~--~~~~~~v~~~- 256 (373)
T 2fzw_A 188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT----ECINPQDFS--KPIQEVLIEM- 256 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS----EEECGGGCS--SCHHHHHHHH-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc----eEecccccc--ccHHHHHHHH-
Confidence 56789999999865 666666665 5776899999999888887642 322 111111000 0000111111
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC-eEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 184 (225)
..+.+|+|+.+... ...+..+.++|+++ |.++....
T Consensus 257 ------------~~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 257 ------------TDGGVDYSFECIGN---VKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp ------------TTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred ------------hCCCCCEEEECCCc---HHHHHHHHHhhccCCcEEEEEec
Confidence 12379999875543 23466788899999 99987543
No 328
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=95.08 E-value=0.0098 Score=51.12 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=63.0
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-.|+|. |.+++.+++. |+ +++++|.++..++.+++. +.. . ....+...+ .+.+..
T Consensus 187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~---~-vi~~~~~~~----~~~v~~-- 251 (363)
T 3uog_A 187 LRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFAL----GAD---H-GINRLEEDW----VERVYA-- 251 (363)
T ss_dssp CCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TCS---E-EEETTTSCH----HHHHHH--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHc----CCC---E-EEcCCcccH----HHHHHH--
Confidence 56789999999775 6666666664 55 799999999888887642 322 1 111111111 011111
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
......+|+|+.+..- ..+..+.++|+++|.+++.+.
T Consensus 252 ----------~~~g~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 252 ----------LTGDRGADHILEIAGG----AGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp ----------HHTTCCEEEEEEETTS----SCHHHHHHHEEEEEEEEEECC
T ss_pred ----------HhCCCCceEEEECCCh----HHHHHHHHHhhcCCEEEEEec
Confidence 1134579999876542 345677789999999987544
No 329
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=95.02 E-value=0.017 Score=50.16 Aligned_cols=105 Identities=17% Similarity=0.361 Sum_probs=65.1
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-+|+|. |.+++.+++ .|+.+|+++|.++..++.+++ .+. + .+...+.+.+ .+.+...
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa--~--~i~~~~~~~~----~~~v~~~- 249 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF--E--IADLSLDTPL----HEQIAAL- 249 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC--E--EEETTSSSCH----HHHHHHH-
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC--c--EEccCCcchH----HHHHHHH-
Confidence 56789999999876 777777776 577689999999998888864 232 1 1111110100 0111111
Q ss_pred cccccccccCCCCCCceeEEEeccchhH------------HHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNP------------LLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.....+|+|+-...... ....++.+.++|+++|.+++.+.
T Consensus 250 -----------t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~ 301 (398)
T 1kol_A 250 -----------LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 301 (398)
T ss_dssp -----------HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred -----------hCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence 12346999987544221 12357788899999999987553
No 330
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=94.91 E-value=0.084 Score=45.33 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=62.6
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-+|+|. |.+++.+++ .|+.+|+++|.++..++.+++ .+.. ......... .++.+.+...
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~--~~~~~~v~~~- 261 (376)
T 1e3i_A 193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT----DCLNPRELD--KPVQDVITEL- 261 (376)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS----EEECGGGCS--SCHHHHHHHH-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc----EEEcccccc--chHHHHHHHH-
Confidence 56789999999875 666666666 566689999999988887753 2322 111111000 0000111111
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC-eEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 184 (225)
..+.+|+|+-.... ...+..+.++|+++ |.+++...
T Consensus 262 ------------~~~g~Dvvid~~G~---~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 262 ------------TAGGVDYSLDCAGT---AQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp ------------HTSCBSEEEESSCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred ------------hCCCccEEEECCCC---HHHHHHHHHHhhcCCCEEEEECC
Confidence 12379999875433 23466788899999 99987543
No 331
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=94.89 E-value=0.012 Score=62.54 Aligned_cols=102 Identities=14% Similarity=0.077 Sum_probs=49.8
Q ss_pred cCCCcEEEEcccccHHHHHHHh-cC-----CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccc
Q 041459 57 KGGELFLDYGTGSGILGIAAIK-FG-----AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVD 130 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~~~~l~~-~~-----~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
++..+|||+|.|+|..+..+.. .+ ..+|+..|+++...+.|++++.... +.....+.... .
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d-----i~~~~~d~~~~--------~ 1305 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH-----VTQGQWDPANP--------A 1305 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT-----EEEECCCSSCC--------C
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc-----ccccccccccc--------c
Confidence 3467999999999976554332 21 3479999999888777776654321 11110011000 0
Q ss_pred ccccccccccccCCCCCCceeEEEeccchh---HHHHHHHHHHHhccCCeEEEEecc
Q 041459 131 GIVEDLSSHEIRGISETEKYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+. ....||+|++...++ .....+.++.++|||||.+++...
T Consensus 1306 ~~-------------~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1306 PG-------------SLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp C------------------CCEEEEECC--------------------CCEEEEEEC
T ss_pred cC-------------CCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence 00 235699999977765 356678899999999999888543
No 332
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=94.88 E-value=0.12 Score=44.37 Aligned_cols=103 Identities=22% Similarity=0.260 Sum_probs=62.4
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-+|+|. |.+++.+++ .|..+|+++|.++..++.+++ .+.. ......... .++.+.+...
T Consensus 189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~----~vi~~~~~~--~~~~~~~~~~- 257 (374)
T 2jhf_A 189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT----ECVNPQDYK--KPIQEVLTEM- 257 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS----EEECGGGCS--SCHHHHHHHH-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc----eEecccccc--hhHHHHHHHH-
Confidence 56789999999875 666666665 566689999999988887753 2322 111111000 0000111111
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC-eEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 184 (225)
..+.+|+|+.+... ...+..+.++|+++ |.++....
T Consensus 258 ------------~~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 258 ------------SNGGVDFSFEVIGR---LDTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp ------------TTSCBSEEEECSCC---HHHHHHHHHHBCTTTCEEEECSC
T ss_pred ------------hCCCCcEEEECCCC---HHHHHHHHHHhhcCCcEEEEecc
Confidence 12379999875543 23466778899999 99887543
No 333
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=94.77 E-value=0.017 Score=48.83 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=60.8
Q ss_pred ccCCCcEEEEcc-c-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGT-G-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGc-G-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
+++|++||-.|+ | .|..+..+++ .|. ++++++.++..++.+++ .+.. .........+ .+.+..
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~----~~~~~~~~~~----~~~~~~- 211 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE----YGAE----YLINASKEDI----LRQVLK- 211 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS----EEEETTTSCH----HHHHHH-
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc----EEEeCCCchH----HHHHHH-
Confidence 457899999984 3 3666666665 455 79999999988887754 2321 1111111111 011111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
......+|+++.+... ..+..+.++|+++|.++..+
T Consensus 212 -----------~~~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 212 -----------FTNGKGVDASFDSVGK----DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp -----------HTTTSCEEEEEECCGG----GGHHHHHHHEEEEEEEEECC
T ss_pred -----------HhCCCCceEEEECCCh----HHHHHHHHHhccCCEEEEEc
Confidence 1134579999986653 34667778999999998753
No 334
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=94.74 E-value=0.1 Score=44.13 Aligned_cols=99 Identities=15% Similarity=0.230 Sum_probs=62.9
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-.|+|. |.+++.+++ .|. +++++|.+++.++.+++ .+.. .........+ .+.+..
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~----~~i~~~~~~~----~~~~~~-- 228 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LGAE----VAVNARDTDP----AAWLQK-- 228 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS----EEEETTTSCH----HHHHHH--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCCC----EEEeCCCcCH----HHHHHH--
Confidence 56789999999976 777777776 455 89999999998887764 2322 1111111111 011100
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
..+.+|+++.+..- ...++.+.+.|+++|.++..+.
T Consensus 229 ------------~~g~~d~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 229 ------------EIGGAHGVLVTAVS---PKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp ------------HHSSEEEEEESSCC---HHHHHHHHHHEEEEEEEEECSC
T ss_pred ------------hCCCCCEEEEeCCC---HHHHHHHHHHhccCCEEEEeCC
Confidence 12368998865432 2456678889999999988544
No 335
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=94.72 E-value=0.015 Score=49.02 Aligned_cols=100 Identities=21% Similarity=0.172 Sum_probs=61.8
Q ss_pred ccCCCcEEEEc-cc-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYG-TG-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiG-cG-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
+++|++||-.| +| .|..+..+++ .|+ ++++++.++..++.+++. +.. . ........+ .+.+..
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----Ga~---~-~~~~~~~~~----~~~~~~- 203 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKAL----GAW---E-TIDYSHEDV----AKRVLE- 203 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS---E-EEETTTSCH----HHHHHH-
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCC---E-EEeCCCccH----HHHHHH-
Confidence 55789999988 34 3666666665 465 799999999888877642 321 1 111111111 011111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
......+|+++.+... ..+..+.++|+++|.++....
T Consensus 204 -----------~~~~~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 204 -----------LTDGKKCPVVYDGVGQ----DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp -----------HTTTCCEEEEEESSCG----GGHHHHHTTEEEEEEEEECCC
T ss_pred -----------HhCCCCceEEEECCCh----HHHHHHHHHhcCCCEEEEEec
Confidence 1134579999986554 345677889999999988544
No 336
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=94.49 E-value=0.021 Score=48.57 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=65.6
Q ss_pred hccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 55 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 55 ~~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
.+++|++|+-.|+|. |.+++.+++ .+..+++++|.+++-++.+++ .+.. .....+. .+ .+.+...
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~----~~i~~~~-~~----~~~v~~~ 234 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD----AAVKSGA-GA----ADAIREL 234 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS----EEEECST-TH----HHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC----EEEcCCC-cH----HHHHHHH
Confidence 356789999999876 677777776 457889999999998888764 3322 1111111 11 1111111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.....+|+++-...-. ..++.+.++|+++|.+++...
T Consensus 235 ------------t~g~g~d~v~d~~G~~---~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 235 ------------TGGQGATAVFDFVGAQ---STIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp ------------HGGGCEEEEEESSCCH---HHHHHHHHHEEEEEEEEECSC
T ss_pred ------------hCCCCCeEEEECCCCH---HHHHHHHHHHhcCCEEEEECC
Confidence 1234799998754432 356778889999999988544
No 337
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=94.47 E-value=0.01 Score=46.17 Aligned_cols=100 Identities=15% Similarity=0.152 Sum_probs=58.7
Q ss_pred ccCCCcEEEEccc--ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGTG--SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcG--tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
++++++|+..|++ .|.....+++ .|. +++++|.+++.++.+++ .+.. . .. +.... +..+.....
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~---~-~~--d~~~~--~~~~~~~~~ 102 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE---Y-VG--DSRSV--DFADEILEL 102 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS---E-EE--ETTCS--THHHHHHHH
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC---E-Ee--eCCcH--HHHHHHHHH
Confidence 5578999999853 3555554443 564 79999999887766542 2321 1 11 11110 000111111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.....+|+++.+... ..+..+.+.|+++|.++..+.
T Consensus 103 ------------~~~~~~D~vi~~~g~----~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 103 ------------TDGYGVDVVLNSLAG----EAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp ------------TTTCCEEEEEECCCT----HHHHHHHHTEEEEEEEEECSC
T ss_pred ------------hCCCCCeEEEECCch----HHHHHHHHHhccCCEEEEEcC
Confidence 023469999987642 456778889999999987543
No 338
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=94.46 E-value=0.02 Score=49.56 Aligned_cols=105 Identities=14% Similarity=0.188 Sum_probs=62.5
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-.|+|. |.+++.+++ .|+.++++++.+++.++.+++ .+.. .+..... .-..++.+.+.
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~----~vi~~~~-~~~~~~~~~v~--- 260 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD----LTLNRRE-TSVEERRKAIM--- 260 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS----EEEETTT-SCHHHHHHHHH---
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc----EEEeccc-cCcchHHHHHH---
Confidence 55789999999764 666666666 465689999999988887763 2322 1111110 00000001111
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.......+|+|+-+.... ..+..+.++|+++|.++....
T Consensus 261 ---------~~~~g~g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 261 ---------DITHGRGADFILEATGDS---RALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp ---------HHTTTSCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCC
T ss_pred ---------HHhCCCCCcEEEECCCCH---HHHHHHHHHHhcCCEEEEEec
Confidence 111234699998765432 235677789999999987544
No 339
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=94.45 E-value=0.052 Score=46.61 Aligned_cols=96 Identities=10% Similarity=0.103 Sum_probs=61.8
Q ss_pred CCCcEEEEc-ccc-cHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 58 GGELFLDYG-TGS-GILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 58 ~~~~vlDiG-cGt-G~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
+|++||=.| +|. |.+++.+++. +..+++++|.++.-++.+++ .+.+ .+... .+.+ .+.+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad----~vi~~-~~~~----~~~v----- 232 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH----HVIDH-SKPL----AAEV----- 232 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS----EEECT-TSCH----HHHH-----
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC----EEEeC-CCCH----HHHH-----
Confidence 578899998 554 7778888875 67789999999988888764 3322 11111 1111 0111
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
... ..+.+|+++.+..- ...++.+.++|+++|.++..
T Consensus 233 -------~~~-~~~g~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 233 -------AAL-GLGAPAFVFSTTHT---DKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp -------HTT-CSCCEEEEEECSCH---HHHHHHHHHHSCTTCEEEEC
T ss_pred -------HHh-cCCCceEEEECCCc---hhhHHHHHHHhcCCCEEEEE
Confidence 111 34579999875432 23567788899999999874
No 340
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=94.42 E-value=0.016 Score=49.22 Aligned_cols=100 Identities=13% Similarity=0.088 Sum_probs=61.7
Q ss_pred ccCCCcEEEEcccc--cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGTGS--GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcGt--G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
+++|++||-.|+|+ |..+..+++ .|+ +++++|.++..++.+++. +.. . ........+ .+.+..
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----ga~---~-~~~~~~~~~----~~~~~~- 207 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRL----GAA---Y-VIDTSTAPL----YETVME- 207 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS---E-EEETTTSCH----HHHHHH-
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhC----CCc---E-EEeCCcccH----HHHHHH-
Confidence 56789999999874 666666665 465 799999999888887652 321 1 111111111 011111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
......+|+++.+..-... ....++|+++|.++..+.
T Consensus 208 -----------~~~~~g~Dvvid~~g~~~~----~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 208 -----------LTNGIGADAAIDSIGGPDG----NELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp -----------HTTTSCEEEEEESSCHHHH----HHHHHTEEEEEEEEECCC
T ss_pred -----------HhCCCCCcEEEECCCChhH----HHHHHHhcCCCEEEEEee
Confidence 1134579999986654433 234479999999988654
No 341
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*
Probab=94.39 E-value=0.14 Score=42.82 Aligned_cols=91 Identities=14% Similarity=0.127 Sum_probs=57.8
Q ss_pred cEEEEcc-c-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 61 LFLDYGT-G-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 61 ~vlDiGc-G-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
+||=.|+ | .|.+++.+++ .|+ ++++++.+++-++.+++. +.+ ..+...+...
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~----------------- 203 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSL----GAN---RILSRDEFAE----------------- 203 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----TCS---EEEEGGGSSC-----------------
T ss_pred eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCC---EEEecCCHHH-----------------
Confidence 4888887 3 3777777776 465 799999999988888652 322 1111111000
Q ss_pred cccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 138 SHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
++.+ ....+|+++-+..- ..++.+.++|+++|.++....
T Consensus 204 ---~~~~-~~~~~d~v~d~~g~----~~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 204 ---SRPL-EKQLWAGAIDTVGD----KVLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp ---CCSS-CCCCEEEEEESSCH----HHHHHHHHTEEEEEEEEECCC
T ss_pred ---HHhh-cCCCccEEEECCCc----HHHHHHHHHHhcCCEEEEEec
Confidence 0011 23579998865432 267788899999999987544
No 342
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=94.38 E-value=0.074 Score=45.18 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=62.1
Q ss_pred hccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 55 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 55 ~~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
.+++|++||-.|+|. |.+++.+++ .|. +++++|.++..++.+++ .+.. . .. .+.+.+
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~--~--v~-~~~~~~----------- 231 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MGVK--H--FY-TDPKQC----------- 231 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TTCS--E--EE-SSGGGC-----------
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cCCC--e--ec-CCHHHH-----------
Confidence 356799999999875 677777666 455 79999999988887764 3422 1 11 111111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCC
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS 186 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (225)
...+|+|+-...-. ..+..+.+.|+++|.+++.+...
T Consensus 232 --------------~~~~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~~~ 268 (348)
T 3two_A 232 --------------KEELDFIISTIPTH---YDLKDYLKLLTYNGDLALVGLPP 268 (348)
T ss_dssp --------------CSCEEEEEECCCSC---CCHHHHHTTEEEEEEEEECCCCC
T ss_pred --------------hcCCCEEEECCCcH---HHHHHHHHHHhcCCEEEEECCCC
Confidence 12799998754322 13557778999999999865433
No 343
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*
Probab=94.18 E-value=0.24 Score=42.01 Aligned_cols=101 Identities=14% Similarity=0.172 Sum_probs=60.9
Q ss_pred ccCC--CcEEEEccc--ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccc
Q 041459 56 IKGG--ELFLDYGTG--SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVD 130 (225)
Q Consensus 56 ~~~~--~~vlDiGcG--tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
++++ ++||-.|++ .|..+..+++ .|..++++++.++..++.+++. .+.. ..+. .....+ .+.+.
T Consensus 156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~---~~~d-~~~~~~----~~~~~ 224 (357)
T 2zb4_A 156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD---AAIN-YKKDNV----AEQLR 224 (357)
T ss_dssp CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS---EEEE-TTTSCH----HHHHH
T ss_pred CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc---eEEe-cCchHH----HHHHH
Confidence 5678 999999973 3555555554 5665899999998777766542 2321 1111 111110 01111
Q ss_pred ccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 131 GIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.. ... .+|+++.+..- ..+..+.++|+++|.+++.+.
T Consensus 225 ~~------------~~~-~~d~vi~~~G~----~~~~~~~~~l~~~G~iv~~G~ 261 (357)
T 2zb4_A 225 ES------------CPA-GVDVYFDNVGG----NISDTVISQMNENSHIILCGQ 261 (357)
T ss_dssp HH------------CTT-CEEEEEESCCH----HHHHHHHHTEEEEEEEEECCC
T ss_pred Hh------------cCC-CCCEEEECCCH----HHHHHHHHHhccCcEEEEECC
Confidence 11 122 79999987652 557788899999999987543
No 344
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=94.17 E-value=0.36 Score=40.91 Aligned_cols=101 Identities=17% Similarity=0.219 Sum_probs=62.0
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC-CCCCcccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 132 (225)
+++|++||-.|+|. |.+++.+++ .|.. |+++|.++..++.+++ .+.+ ....... ..+ .+.+...
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~-Vi~~~~~~~~~~~~~~----lGa~----~~~~~~~~~~~----~~~i~~~ 232 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKN----CGAD----VTLVVDPAKEE----ESSIIER 232 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHH----TTCS----EEEECCTTTSC----HHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHH----hCCC----EEEcCcccccH----HHHHHHH
Confidence 56789999999875 666666666 4554 9999999988887763 2322 1111110 111 0111110
Q ss_pred ccccccccccCCCC---CCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISE---TEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~---~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.. ...+|+++.+.... ..+..+.++|+++|.++....
T Consensus 233 ------------~~~~~g~g~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 233 ------------IRSAIGDLPNVTIDCSGNE---KCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp ------------HHHHSSSCCSEEEECSCCH---HHHHHHHHHSCTTCEEEECSC
T ss_pred ------------hccccCCCCCEEEECCCCH---HHHHHHHHHHhcCCEEEEEec
Confidence 01 34699998765432 245677789999999987544
No 345
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Probab=93.84 E-value=0.059 Score=45.80 Aligned_cols=100 Identities=20% Similarity=0.193 Sum_probs=61.3
Q ss_pred CCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+|++||-+|+|. |..++.+++ .|..+++++|.++..++.+++. +.. .........+ .+.+..
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~----~~~~~~~~~~----~~~v~~---- 230 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GAD----YVINPFEEDV----VKEVMD---- 230 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCS----EEECTTTSCH----HHHHHH----
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC----EEECCCCcCH----HHHHHH----
Confidence 789999999964 566666665 5665899999999888877642 321 1111111111 011111
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
......+|+++.+... ...+..+.+.|+++|.++....
T Consensus 231 --------~~~g~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 231 --------ITDGNGVDVFLEFSGA---PKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp --------HTTTSCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECCC
T ss_pred --------HcCCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEcc
Confidence 1123469999876543 2346677889999999887543
No 346
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*
Probab=93.84 E-value=0.22 Score=41.96 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=61.0
Q ss_pred ccCCCcEEEEcc--cccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGT--GSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGc--GtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
+++|++||-.|+ |.|..+..+++ .|. ++++++.++..++.+++. .+.. ..+...+...+ .+.+...
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~---~g~~---~~~d~~~~~~~----~~~~~~~ 221 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTK---FGFD---DAFNYKEESDL----TAALKRC 221 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT---SCCS---EEEETTSCSCS----HHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH---cCCc---eEEecCCHHHH----HHHHHHH
Confidence 567899999997 34666666555 565 799999999887776532 2321 11111111111 0111111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
....+|+++.+... ..+..+.++|+++|.+++.+
T Consensus 222 -------------~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 222 -------------FPNGIDIYFENVGG----KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp -------------CTTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred -------------hCCCCcEEEECCCH----HHHHHHHHHHhcCCEEEEEc
Confidence 12569999987653 25677888999999998754
No 347
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=93.75 E-value=0.048 Score=45.59 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=29.7
Q ss_pred CCCceeEEEeccchhH-----------------------HHHHHHHHHHhccCCeEEEEe
Q 041459 146 ETEKYDVVIANILLNP-----------------------LLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 146 ~~~~~DvIi~~~~~~~-----------------------~~~~l~~~~~~LkpgG~l~~~ 182 (225)
++++||+|++|||+.. +..++..+.++|||||.+++.
T Consensus 37 ~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~ 96 (297)
T 2zig_A 37 PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV 96 (297)
T ss_dssp CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4678999999999731 234677899999999999885
No 348
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=93.62 E-value=1.2 Score=38.39 Aligned_cols=114 Identities=12% Similarity=0.047 Sum_probs=77.1
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
.+.+|+.++.+-|.++..++..+ ++.+.=|-......+.|+..+++....+.+... .+.
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~~---~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~----------------- 96 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEHK---PYSIGDSYISELATRENLRLNGIDESSVKFLDS-TAD----------------- 96 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGGC---CEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSC-----------------
T ss_pred CCCCEEEECCCCCHHHHhhccCC---ceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-ccc-----------------
Confidence 45689999999999998876543 344432555666778899999987544554321 111
Q ss_pred cccccCCCCCCceeEEEeccch--hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhh
Q 041459 138 SHEIRGISETEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFL 200 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 200 (225)
....||+++...|. ......+..+...|++|+.+++.+-...-.....+.+.+.+
T Consensus 97 --------~~~~~~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~~~l~~~~ 153 (375)
T 4dcm_A 97 --------YPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVL 153 (375)
T ss_dssp --------CCSSCSEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEEEEGGGCCHHHHHHHHHHT
T ss_pred --------cccCCCEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEEecccchHHHHHHHHHhhc
Confidence 35679999987664 44666788999999999999876544444445555555543
No 349
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*
Probab=93.45 E-value=0.13 Score=44.03 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=62.1
Q ss_pred ccCCCcEEEEc-cc-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYG-TG-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiG-cG-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
+++|++||-.| +| .|..+..+++ .|+ ++++++.+++.++.+++ .+.. .........+ .+.+...
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~----~~~~~~~~~~----~~~~~~~ 227 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS----LGCD----RPINYKTEPV----GTVLKQE 227 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS----EEEETTTSCH----HHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----cCCc----EEEecCChhH----HHHHHHh
Confidence 56789999999 34 4777777665 455 79999999988877764 2322 1111111111 0111111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
....+|+++.+... ..++.+.+.|+++|.+++...
T Consensus 228 -------------~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 228 -------------YPEGVDVVYESVGG----AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp -------------CTTCEEEEEECSCT----HHHHHHHHHEEEEEEEEECCC
T ss_pred -------------cCCCCCEEEECCCH----HHHHHHHHHHhcCCEEEEEeC
Confidence 23469999986653 456778889999999887543
No 350
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=93.44 E-value=0.83 Score=33.20 Aligned_cols=96 Identities=13% Similarity=-0.047 Sum_probs=54.8
Q ss_pred CCcEEEEcccc-cHHHH-HHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 59 GELFLDYGTGS-GILGI-AAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 59 ~~~vlDiGcGt-G~~~~-~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
..+|+=+|+|. |.... .+.+.|. .++++|.+++.++.++. .+ +....++.... +.+...
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~g-----~~~i~gd~~~~-----~~l~~a---- 67 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----RG-----VRAVLGNAANE-----EIMQLA---- 67 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----TT-----CEEEESCTTSH-----HHHHHT----
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----cC-----CCEEECCCCCH-----HHHHhc----
Confidence 35788888875 43322 3444554 69999999988877653 23 23444443221 111100
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
....+|++++..+-+.....+....+.+.|+..++..
T Consensus 68 ---------~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar 104 (140)
T 3fwz_A 68 ---------HLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIAR 104 (140)
T ss_dssp ---------TGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred ---------CcccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEE
Confidence 2346898887766554443344455667788777664
No 351
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=93.30 E-value=0.18 Score=42.61 Aligned_cols=99 Identities=17% Similarity=0.208 Sum_probs=61.3
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-.|+|. |..++.+++ .|. +++++|.++..++.+++ .+.. .. .+.... ++.+.+...
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~----~~--~d~~~~--~~~~~~~~~- 227 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD----LV--VNPLKE--DAAKFMKEK- 227 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS----EE--ECTTTS--CHHHHHHHH-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CCCC----EE--ecCCCc--cHHHHHHHH-
Confidence 56789999999964 666666665 455 89999999988887753 2322 11 111110 000111110
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
. ..+|+++.+.... ..++.+.++|+++|.++....
T Consensus 228 ------------~-~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 228 ------------V-GGVHAAVVTAVSK---PAFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp ------------H-SSEEEEEESSCCH---HHHHHHHHHEEEEEEEEECCC
T ss_pred ------------h-CCCCEEEECCCCH---HHHHHHHHHhhcCCEEEEecc
Confidence 1 4699998765432 346677889999999987543
No 352
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=93.29 E-value=0.12 Score=44.11 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=60.3
Q ss_pred ccCCCcEEEEcc-c-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGT-G-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGc-G-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
+++|++||-.|+ | .|..+..+++ .|+ +++++|.++..++.+++. +.. .........+ .+.+...
T Consensus 165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~----~~~~~~~~~~----~~~~~~~ 231 (353)
T 4dup_A 165 LTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERL----GAK----RGINYRSEDF----AAVIKAE 231 (353)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS----EEEETTTSCH----HHHHHHH
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCC----EEEeCCchHH----HHHHHHH
Confidence 567899998843 3 3666666665 455 799999999988887652 321 1111111111 0111111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
....+|+++.+..-. .+..+.+.|+++|.++....
T Consensus 232 -------------~~~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 232 -------------TGQGVDIILDMIGAA----YFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp -------------HSSCEEEEEESCCGG----GHHHHHHTEEEEEEEEECCC
T ss_pred -------------hCCCceEEEECCCHH----HHHHHHHHhccCCEEEEEEe
Confidence 145799999866543 45667789999999887543
No 353
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=93.17 E-value=0.082 Score=44.78 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=31.3
Q ss_pred CCCceeEEEeccchh-----------------HHHHHHHHHHHhccCCeEEEEe
Q 041459 146 ETEKYDVVIANILLN-----------------PLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 146 ~~~~~DvIi~~~~~~-----------------~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
+.+++|+|+++||+. .+...+..+.++|||||.+++.
T Consensus 30 ~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~ 83 (323)
T 1boo_A 30 PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 83 (323)
T ss_dssp CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence 467899999999983 3566788899999999999985
No 354
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=93.08 E-value=0.08 Score=49.38 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=26.5
Q ss_pred CCceeEEEeccchh------HHHHHHHHHHHhccCCeEEEE
Q 041459 147 TEKYDVVIANILLN------PLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 147 ~~~~DvIi~~~~~~------~~~~~l~~~~~~LkpgG~l~~ 181 (225)
...+|.++.++--. +..+++..+.+++++||++.-
T Consensus 169 ~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 169 NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp TTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred CCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 46799999864221 236788999999999998765
No 355
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=93.03 E-value=0.32 Score=41.06 Aligned_cols=69 Identities=10% Similarity=-0.094 Sum_probs=41.0
Q ss_pred CCceeEEEecc--c-h---hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhccccc-CCceEEEeee
Q 041459 147 TEKYDVVIANI--L-L---NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILLSEM-DDWTCVSGTK 218 (225)
Q Consensus 147 ~~~~DvIi~~~--~-~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~w~~~~~~k 218 (225)
..++|+|+.+. | . -+-.++++.++++++|||++.--+ ....+++.+.+. |.......- +.+-.+.+++
T Consensus 184 ~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt----aag~VRR~L~~aGF~V~k~~G~g~KReml~A~~ 259 (308)
T 3vyw_A 184 NFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS----SSLSVRKSLLTLGFKVGSSREIGRKRKGTVASL 259 (308)
T ss_dssp SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC----CCHHHHHHHHHTTCEEEEEECC---CEEEEEES
T ss_pred ccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe----CcHHHHHHHHHCCCEEEecCCCCCCCceeEEec
Confidence 45799999864 1 1 123678999999999999986421 234555556554 654333322 2344555554
Q ss_pred e
Q 041459 219 K 219 (225)
Q Consensus 219 ~ 219 (225)
+
T Consensus 260 ~ 260 (308)
T 3vyw_A 260 K 260 (308)
T ss_dssp S
T ss_pred C
Confidence 4
No 356
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}
Probab=93.03 E-value=0.048 Score=46.28 Aligned_cols=100 Identities=15% Similarity=0.216 Sum_probs=61.5
Q ss_pred ccCCCcEEEEcc--cccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGT--GSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGc--GtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
++++++||-.|+ |.|..+..+++ .|. ++++++.++..++.+++ .+.. . ........+ .+.+...
T Consensus 164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~----~ga~---~-~~d~~~~~~----~~~~~~~ 230 (343)
T 2eih_A 164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKA----LGAD---E-TVNYTHPDW----PKEVRRL 230 (343)
T ss_dssp CCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS---E-EEETTSTTH----HHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC---E-EEcCCcccH----HHHHHHH
Confidence 557899999998 34666666665 455 79999999988887753 2321 1 111111110 0111111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.....+|+++.+..- ..+..+.+.|+++|.++....
T Consensus 231 ------------~~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T 2eih_A 231 ------------TGGKGADKVVDHTGA----LYFEGVIKATANGGRIAIAGA 266 (343)
T ss_dssp ------------TTTTCEEEEEESSCS----SSHHHHHHHEEEEEEEEESSC
T ss_pred ------------hCCCCceEEEECCCH----HHHHHHHHhhccCCEEEEEec
Confidence 123479999987652 245677789999999887543
No 357
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=92.97 E-value=0.057 Score=46.48 Aligned_cols=96 Identities=15% Similarity=0.213 Sum_probs=60.3
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-+|+|. |.+++.+++. |+ +++++|.++..++.+++ .+.. .+...... +.
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~-------~~----- 250 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGAD----EVVNSRNA-------DE----- 250 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS----EEEETTCH-------HH-----
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc----EEeccccH-------HH-----
Confidence 56789999999875 6667776664 54 59999999988888764 2322 11111000 00
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+..+ ...+|+|+...... ..++.+.+.|+++|.++....
T Consensus 251 -------~~~~--~~g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 251 -------MAAH--LKSFDFILNTVAAP---HNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp -------HHTT--TTCEEEEEECCSSC---CCHHHHHTTEEEEEEEEECCC
T ss_pred -------HHHh--hcCCCEEEECCCCH---HHHHHHHHHhccCCEEEEecc
Confidence 0111 14799998754322 124567789999999887544
No 358
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=92.94 E-value=0.19 Score=42.59 Aligned_cols=97 Identities=10% Similarity=0.147 Sum_probs=60.4
Q ss_pred CCCcEEEEcccc-cHHHHHHHh-c--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 58 GGELFLDYGTGS-GILGIAAIK-F--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~~~~l~~-~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+|++||-+|+|. |.+++.+++ . |. +++++|.++..++.+++. +.+ ........ . +....
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~----~vi~~~~~---~---~~~~~-- 232 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALEL----GAD----YVSEMKDA---E---SLINK-- 232 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHH----TCS----EEECHHHH---H---HHHHH--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHh----CCC----EEeccccc---h---HHHHH--
Confidence 789999999975 666666665 4 54 699999999888887642 321 01100000 0 00000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+.....+|+|+...... ..++.+.++|+++|.++....
T Consensus 233 ----------~~~g~g~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 233 ----------LTDGLGASIAIDLVGTE---ETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp ----------HHTTCCEEEEEESSCCH---HHHHHHHHHEEEEEEEEECCC
T ss_pred ----------hhcCCCccEEEECCCCh---HHHHHHHHHhhcCCEEEEeCC
Confidence 11234799998765432 346677889999999987543
No 359
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=92.79 E-value=0.12 Score=43.77 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=61.1
Q ss_pred ccCCCcEEEEccccc-HHHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGSG-ILGIAAI-KFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGtG-~~~~~l~-~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
.++|++||=+|+|++ .++..++ ..+..+|+++|.+++-++.+++. +.. ..+...+ ..+ .+.+..
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~----Ga~---~~i~~~~-~~~----~~~v~~-- 226 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI----GAD---VTINSGD-VNP----VDEIKK-- 226 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT----TCS---EEEEC-C-CCH----HHHHHH--
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc----CCe---EEEeCCC-CCH----HHHhhh--
Confidence 567899999999874 4454444 46778899999999887776643 322 1111111 111 011111
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
......+|+++.+..- ...+....++|+++|.+++...
T Consensus 227 ----------~t~g~g~d~~~~~~~~---~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 227 ----------ITGGLGVQSAIVCAVA---RIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp ----------HTTSSCEEEEEECCSC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred ----------hcCCCCceEEEEeccC---cchhheeheeecCCceEEEEec
Confidence 1134467777654332 2346677789999999887543
No 360
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=92.74 E-value=0.25 Score=41.80 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=58.6
Q ss_pred CCCcEEEE-cccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 58 GGELFLDY-GTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 58 ~~~~vlDi-GcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
+|++||-. |+|. |.+++.+++ .|+ ++++++.++..++.+++. +.+ ...... +.+ .+.+...
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~----~vi~~~-~~~----~~~~~~~-- 213 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKM----GAD----IVLNHK-ESL----LNQFKTQ-- 213 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHH----TCS----EEECTT-SCH----HHHHHHH--
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCc----EEEECC-ccH----HHHHHHh--
Confidence 68899988 4554 666666666 455 899999999888888752 321 111111 111 1111111
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
....+|+++.+..- ...++.+.++|+++|.++..
T Consensus 214 -----------~~~g~Dvv~d~~g~---~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 214 -----------GIELVDYVFCTFNT---DMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp -----------TCCCEEEEEESSCH---HHHHHHHHHHEEEEEEEEES
T ss_pred -----------CCCCccEEEECCCc---hHHHHHHHHHhccCCEEEEE
Confidence 34579999875432 23456778899999999763
No 361
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=92.74 E-value=0.04 Score=46.38 Aligned_cols=99 Identities=21% Similarity=0.216 Sum_probs=59.4
Q ss_pred ccCCCcEEEEcc--cccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGT--GSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGc--GtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
++++++||-.|+ |.|.....+++ .|. +++++|.++..++.+++. +.. ..+. .....+ .+.+...
T Consensus 138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~----g~~---~~~~-~~~~~~----~~~~~~~ 204 (327)
T 1qor_A 138 IKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GAW---QVIN-YREEDL----VERLKEI 204 (327)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS---EEEE-TTTSCH----HHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCC---EEEE-CCCccH----HHHHHHH
Confidence 457899999984 33555555444 565 799999999888777642 321 1111 111110 0111111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
.....+|+++.+.. ...++.+.++|+++|.++...
T Consensus 205 ------------~~~~~~D~vi~~~g----~~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 205 ------------TGGKKVRVVYDSVG----RDTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp ------------TTTCCEEEEEECSC----GGGHHHHHHTEEEEEEEEECC
T ss_pred ------------hCCCCceEEEECCc----hHHHHHHHHHhcCCCEEEEEe
Confidence 12346999998765 234667788999999988754
No 362
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=92.71 E-value=3.8 Score=34.31 Aligned_cols=114 Identities=11% Similarity=0.050 Sum_probs=66.8
Q ss_pred CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCcceEEEecCCCCCccccccccccccccc
Q 041459 59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG-PKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
...|+++|||-=+....+......+++=+| .|.+++..++.+...+.. .+.......+... ++.+.+..
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d---~~~~~l~~------ 172 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ---DWPPALRS------ 172 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS---CHHHHHHH------
T ss_pred CCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh---hHHHHHHh------
Confidence 368999999987665544322235789999 599999988888754432 2333333333322 22221110
Q ss_pred cccccCCCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEEeccCCC
Q 041459 138 SHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGILSE 187 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~ 187 (225)
..+ ....--++++...+. ....++..+...+.||+.+++..+..+
T Consensus 173 ----~g~-d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~ 222 (310)
T 2uyo_A 173 ----AGF-DPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLH 222 (310)
T ss_dssp ----TTC-CTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTT
T ss_pred ----ccC-CCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCC
Confidence 011 223344555544432 345678888888899999999765443
No 363
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=92.59 E-value=0.039 Score=46.90 Aligned_cols=98 Identities=19% Similarity=0.192 Sum_probs=60.9
Q ss_pred ccCCCcEEEEcc-c-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGT-G-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGc-G-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
+++|++||-.|+ | .|..+..+++ .|+ ++++++.++..++.+++. +.. ...... ..+ .+.+..
T Consensus 157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga~----~v~~~~-~~~----~~~v~~- 221 (342)
T 4eye_A 157 LRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSV----GAD----IVLPLE-EGW----AKAVRE- 221 (342)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS----EEEESS-TTH----HHHHHH-
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCc----EEecCc-hhH----HHHHHH-
Confidence 557899999997 3 3667776666 455 899999999888877652 322 111111 111 111111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
......+|+++.+..-. .+..+.+.|+++|.++..+
T Consensus 222 -----------~~~~~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 222 -----------ATGGAGVDMVVDPIGGP----AFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp -----------HTTTSCEEEEEESCC------CHHHHHHTEEEEEEEEEC-
T ss_pred -----------HhCCCCceEEEECCchh----HHHHHHHhhcCCCEEEEEE
Confidence 11344799999765432 4667888999999998754
No 364
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=92.49 E-value=0.092 Score=42.92 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=30.5
Q ss_pred CCCceeEEEeccchh-----------------HHHHHHHHHHHhccCCeEEEEe
Q 041459 146 ETEKYDVVIANILLN-----------------PLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 146 ~~~~~DvIi~~~~~~-----------------~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
+.+++|+|+++||+. .+...+..+.++|+|+|.+++.
T Consensus 20 ~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 20 ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 456899999999973 3456788889999999999886
No 365
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1
Probab=92.21 E-value=0.065 Score=45.74 Aligned_cols=99 Identities=17% Similarity=0.215 Sum_probs=59.3
Q ss_pred ccCCCcEEEEccc--ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGTG--SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcG--tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
++++++||-.|++ .|..+..+++ .|. ++++++.+++.++.+++ .+.. . ........+ .+.+...
T Consensus 168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~-~~d~~~~~~----~~~~~~~ 234 (351)
T 1yb5_A 168 VKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAH---E-VFNHREVNY----IDKIKKY 234 (351)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---E-EEETTSTTH----HHHHHHH
T ss_pred CCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHH----cCCC---E-EEeCCCchH----HHHHHHH
Confidence 5678999999973 3566665555 454 79999999988776643 2321 1 111111110 0111110
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
.....+|+++.+..- ..+....++|+++|.++...
T Consensus 235 ------------~~~~~~D~vi~~~G~----~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 235 ------------VGEKGIDIIIEMLAN----VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp ------------HCTTCEEEEEESCHH----HHHHHHHHHEEEEEEEEECC
T ss_pred ------------cCCCCcEEEEECCCh----HHHHHHHHhccCCCEEEEEe
Confidence 123479999876543 24567788999999988754
No 366
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}
Probab=92.21 E-value=0.077 Score=44.75 Aligned_cols=100 Identities=19% Similarity=0.227 Sum_probs=60.4
Q ss_pred ccCCCcEEEEcc--cccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGT--GSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGc--GtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
++++++||-.|+ |.|.....+++ .|. +++++|.+++.++.+++. +.. . ......... .+.+...
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----g~~---~-~~d~~~~~~----~~~i~~~ 209 (333)
T 1wly_A 143 VKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKL----GCH---H-TINYSTQDF----AEVVREI 209 (333)
T ss_dssp CCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS---E-EEETTTSCH----HHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCC---E-EEECCCHHH----HHHHHHH
Confidence 457899999985 34666665554 565 799999999888777542 321 1 111111110 0111110
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.....+|+++.+... ..++.+.+.|+++|.++....
T Consensus 210 ------------~~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 210 ------------TGGKGVDVVYDSIGK----DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp ------------HTTCCEEEEEECSCT----TTHHHHHHTEEEEEEEEECCC
T ss_pred ------------hCCCCCeEEEECCcH----HHHHHHHHhhccCCEEEEEec
Confidence 023469999987653 346677889999999887543
No 367
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}
Probab=92.18 E-value=0.4 Score=40.50 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=60.7
Q ss_pred ccCCCcEEEEccc--ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGTG--SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcG--tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
++++++||-.|++ .|..+..+++ .|. +++++|.++..++.+++ .+.. ..+...+...+ .+.+...
T Consensus 167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~----~~~~~~~ 234 (347)
T 2hcy_A 167 LMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS----IGGE---VFIDFTKEKDI----VGAVLKA 234 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH----TTCC---EEEETTTCSCH----HHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH----cCCc---eEEecCccHhH----HHHHHHH
Confidence 5678999999983 4666665555 565 79999999887776653 2321 11111101111 0111111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
... .+|+++.+... ...++.+.+.|+++|.++....
T Consensus 235 ------------~~~-~~D~vi~~~g~---~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 235 ------------TDG-GAHGVINVSVS---EAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp ------------HTS-CEEEEEECSSC---HHHHHHHTTSEEEEEEEEECCC
T ss_pred ------------hCC-CCCEEEECCCc---HHHHHHHHHHHhcCCEEEEEeC
Confidence 123 79999987653 2356778889999999987543
No 368
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*
Probab=92.13 E-value=0.11 Score=44.07 Aligned_cols=98 Identities=19% Similarity=0.207 Sum_probs=59.0
Q ss_pred CCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+|++||-.|+|. |.+++.+++ .|..+++++|.++..++.+++. .+. ........+ .+.+.
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-------a~~--v~~~~~~~~----~~~~~----- 225 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-------ADR--LVNPLEEDL----LEVVR----- 225 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-------CSE--EECTTTSCH----HHHHH-----
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-------HHh--ccCcCccCH----HHHHH-----
Confidence 789999999864 566666665 4665799999998776655431 111 111111111 01111
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.. ....+|+++..... ...++.+.+.|+++|.++....
T Consensus 226 -------~~-~~~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 226 -------RV-TGSGVEVLLEFSGN---EAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp -------HH-HSSCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECCC
T ss_pred -------Hh-cCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEec
Confidence 11 13469999876543 2346677889999999887543
No 369
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=92.04 E-value=0.16 Score=45.52 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=37.5
Q ss_pred CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
..+++|++||.|.++.-+.+.|...+.++|+++.+.+.-+.|.
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~ 130 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANH 130 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHS
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhc
Confidence 3589999999999999888888777999999999888877765
No 370
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=92.02 E-value=0.16 Score=43.01 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=60.8
Q ss_pred ccCCCcEEEEcccc--cHHHHHHHh-c-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccc
Q 041459 56 IKGGELFLDYGTGS--GILGIAAIK-F-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDG 131 (225)
Q Consensus 56 ~~~~~~vlDiGcGt--G~~~~~l~~-~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (225)
++++++||-.|+|+ |..+..+++ . |. +++++|.++..++.+++. +.. ..+. ..... ..+....
T Consensus 168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~---~~~~-~~~~~----~~~~~~~ 234 (347)
T 1jvb_A 168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA----GAD---YVIN-ASMQD----PLAEIRR 234 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH----TCS---EEEE-TTTSC----HHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh----CCC---EEec-CCCcc----HHHHHHH
Confidence 56789999999984 455555554 4 55 699999999888877542 321 1111 11110 0011111
Q ss_pred cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
. ...+.+|+++.+..-. ..++.+.+.|+++|.++....
T Consensus 235 ~------------~~~~~~d~vi~~~g~~---~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 235 I------------TESKGVDAVIDLNNSE---KTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp H------------TTTSCEEEEEESCCCH---HHHTTGGGGEEEEEEEEECCS
T ss_pred H------------hcCCCceEEEECCCCH---HHHHHHHHHHhcCCEEEEECC
Confidence 1 0114799999765432 346677889999999987544
No 371
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Probab=91.93 E-value=1.6 Score=36.94 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=61.8
Q ss_pred ccCC------CcEEEEcccc-cHHH-HHHH-h-cCCCeEEEEeCCHH---HHHHHHHHHHhcCCCCCcceEEEecCCCCC
Q 041459 56 IKGG------ELFLDYGTGS-GILG-IAAI-K-FGAAMSVGVDIDPQ---AIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122 (225)
Q Consensus 56 ~~~~------~~vlDiGcGt-G~~~-~~l~-~-~~~~~v~~vDi~~~---~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (225)
+++| ++||-+|+|. |.++ +.++ + .|..+++++|.+++ -++.+++ .+.. .. ......+
T Consensus 164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~----~v-~~~~~~~- 233 (357)
T 2b5w_A 164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDAT----YV-DSRQTPV- 233 (357)
T ss_dssp HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTCE----EE-ETTTSCG-
T ss_pred CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCCc----cc-CCCccCH-
Confidence 5578 9999999865 6777 7777 5 46666999999987 7777753 3321 11 1111111
Q ss_pred ccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.+ + ... .. .+|+|+-..... ..+..+.++|+++|.++....
T Consensus 234 ---~~-i------------~~~-~g-g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 234 ---ED-V------------PDV-YE-QMDFIYEATGFP---KHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp ---GG-H------------HHH-SC-CEEEEEECSCCH---HHHHHHHHHEEEEEEEEECCC
T ss_pred ---HH-H------------HHh-CC-CCCEEEECCCCh---HHHHHHHHHHhcCCEEEEEeC
Confidence 01 1 111 13 799998754332 346677889999999988544
No 372
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Probab=91.86 E-value=0.097 Score=44.62 Aligned_cols=100 Identities=13% Similarity=0.159 Sum_probs=59.3
Q ss_pred ccCCCcEEEEcc--cccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGT--GSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGc--GtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
+++|++||-.|+ |.|..+..+++ .|. +++++|.++..++.+++. +.. ..+. .....+ .+.+..
T Consensus 160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~---~~~~-~~~~~~----~~~~~~- 225 (354)
T 2j8z_A 160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKL----GAA---AGFN-YKKEDF----SEATLK- 225 (354)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TCS---EEEE-TTTSCH----HHHHHH-
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCc---EEEe-cCChHH----HHHHHH-
Confidence 557899999984 23555555554 454 799999999888777432 321 1111 111110 011111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
......+|+++.+..-. .+....+.|+++|.++....
T Consensus 226 -----------~~~~~~~d~vi~~~G~~----~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 226 -----------FTKGAGVNLILDCIGGS----YWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp -----------HTTTSCEEEEEESSCGG----GHHHHHHHEEEEEEEEECCC
T ss_pred -----------HhcCCCceEEEECCCch----HHHHHHHhccCCCEEEEEec
Confidence 11234699999876543 35567789999999988544
No 373
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=91.78 E-value=1.2 Score=37.36 Aligned_cols=90 Identities=20% Similarity=0.155 Sum_probs=58.6
Q ss_pred CcEEEEcccc-c-HHHHHHHhcCCC-eEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 60 ELFLDYGTGS-G-ILGIAAIKFGAA-MSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 60 ~~vlDiGcGt-G-~~~~~l~~~~~~-~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
++|.=+|+|. | .++..+++.|.. +|++.|.+++.++.+++ .+... ....+....
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~----~~~~~~~~~--------------- 90 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID----EGTTSIAKV--------------- 90 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS----EEESCTTGG---------------
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcc----hhcCCHHHH---------------
Confidence 6788999886 3 344455666653 79999999988777653 23210 111111100
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
.....|+|+...|......++..+...++++.+++-
T Consensus 91 ---------~~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 91 ---------EDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTD 126 (314)
T ss_dssp ---------GGGCCSEEEECSCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred ---------hhccCCEEEEeCCHHHHHHHHHHHhhccCCCcEEEE
Confidence 023479999988887788888899999999876643
No 374
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=91.69 E-value=0.13 Score=43.60 Aligned_cols=39 Identities=13% Similarity=0.103 Sum_probs=31.6
Q ss_pred CCCceeEEEeccchh--------------HHHHHHHHHHHhccCCeEEEEecc
Q 041459 146 ETEKYDVVIANILLN--------------PLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 146 ~~~~~DvIi~~~~~~--------------~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+.+++|+|+++||+. .+...+..+.++|+|||.+++..-
T Consensus 55 ~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~ 107 (319)
T 1eg2_A 55 PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 107 (319)
T ss_dssp CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 466899999999974 245677888999999999998643
No 375
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}
Probab=91.67 E-value=0.11 Score=43.99 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=59.0
Q ss_pred ccCCCcEEEEcc-c-ccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGT-G-SGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGc-G-tG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
+++|++||-.|+ | .|..++.+++. |+ +++++ .++..++.+++ .+.. . +. ....+ .+.....
T Consensus 148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~----lGa~---~-i~--~~~~~----~~~~~~~ 211 (343)
T 3gaz_A 148 VQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRD----LGAT---P-ID--ASREP----EDYAAEH 211 (343)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHH----HTSE---E-EE--TTSCH----HHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHH----cCCC---E-ec--cCCCH----HHHHHHH
Confidence 557899999994 4 36777776664 55 79999 88887777654 2321 1 21 11111 0111111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.....+|+++.+..- ..+..+.+.|+++|.++..
T Consensus 212 ------------~~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 212 ------------TAGQGFDLVYDTLGG----PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp ------------HTTSCEEEEEESSCT----HHHHHHHHHEEEEEEEEES
T ss_pred ------------hcCCCceEEEECCCc----HHHHHHHHHHhcCCeEEEE
Confidence 134579999876542 3567778899999999874
No 376
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=91.59 E-value=2.5 Score=35.84 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=35.3
Q ss_pred CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459 58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN 104 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~ 104 (225)
+...|+.+|||..+....+... +...++-+|. |.+++.-++.+...
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~ 143 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRES 143 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHS
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhc
Confidence 4579999999999998887653 4456777777 88888877776654
No 377
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Probab=91.54 E-value=0.16 Score=42.59 Aligned_cols=98 Identities=13% Similarity=0.158 Sum_probs=59.0
Q ss_pred ccCCC-cEEEEcc-c-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccc
Q 041459 56 IKGGE-LFLDYGT-G-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDG 131 (225)
Q Consensus 56 ~~~~~-~vlDiGc-G-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (225)
+++++ +||-.|+ | .|..++.+++ .|. ++++++.+++.++.+++ .+.. ..+...+.+. +.
T Consensus 147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~------~~--- 209 (330)
T 1tt7_A 147 LSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQ----LGAS---EVISREDVYD------GT--- 209 (330)
T ss_dssp CCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHH----HTCS---EEEEHHHHCS------SC---
T ss_pred cCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc---EEEECCCchH------HH---
Confidence 44564 8999997 4 3666676665 465 59999998887777764 2322 1111111000 00
Q ss_pred cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
+..+ ....+|+++.+..- ..+..+.+.++++|.++..+.
T Consensus 210 ---------~~~~-~~~~~d~vid~~g~----~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 210 ---------LKAL-SKQQWQGAVDPVGG----KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp ---------CCSS-CCCCEEEEEESCCT----HHHHHHHTTEEEEEEEEECCC
T ss_pred ---------HHHh-hcCCccEEEECCcH----HHHHHHHHhhcCCCEEEEEec
Confidence 0011 23469999876543 246778889999999987544
No 378
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Probab=91.48 E-value=0.19 Score=42.06 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=58.1
Q ss_pred ccCCC-cEEEEcc-c-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccc
Q 041459 56 IKGGE-LFLDYGT-G-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDG 131 (225)
Q Consensus 56 ~~~~~-~vlDiGc-G-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (225)
++++. +||-.|+ | .|.+++.+++ .|. ++++++.++..++.+++ .+.. . .+...+.. . +.
T Consensus 146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~--~-~i~~~~~~-~-----~~--- 208 (328)
T 1xa0_A 146 LTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGAK--E-VLAREDVM-A-----ER--- 208 (328)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTCS--E-EEECC---------------
T ss_pred CCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCCc--E-EEecCCcH-H-----HH---
Confidence 44564 8999997 3 3677777666 465 69999999887777754 2322 1 11111100 0 00
Q ss_pred cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
++.+ ....+|+++.+..-. .+..+.+.++++|.++..+.
T Consensus 209 ---------~~~~-~~~~~d~vid~~g~~----~~~~~~~~l~~~G~~v~~G~ 247 (328)
T 1xa0_A 209 ---------IRPL-DKQRWAAAVDPVGGR----TLATVLSRMRYGGAVAVSGL 247 (328)
T ss_dssp ------------C-CSCCEEEEEECSTTT----THHHHHHTEEEEEEEEECSC
T ss_pred ---------HHHh-cCCcccEEEECCcHH----HHHHHHHhhccCCEEEEEee
Confidence 0011 234699998765432 45677889999999987543
No 379
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=91.24 E-value=0.55 Score=41.38 Aligned_cols=107 Identities=17% Similarity=0.168 Sum_probs=61.9
Q ss_pred ccCCCcEEEEcc-cc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCc-------c--
Q 041459 56 IKGGELFLDYGT-GS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPA-------S-- 124 (225)
Q Consensus 56 ~~~~~~vlDiGc-Gt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-- 124 (225)
+++|++||=.|+ |. |.+++.+++....++++++.++.-++.+++ .+.. .........+.. +
T Consensus 226 ~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~----lGa~----~vi~~~~~d~~~~~~~~~~~~~ 297 (456)
T 3krt_A 226 MKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRA----MGAE----AIIDRNAEGYRFWKDENTQDPK 297 (456)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTCC----EEEETTTTTCCSEEETTEECHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHh----hCCc----EEEecCcCcccccccccccchH
Confidence 567899999987 43 677777776433478889989988888754 2322 111111111000 0
Q ss_pred -ccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 125 -MNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 125 -~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+.+.... +........+|+++-+..- ..+..+.++|+++|.++...
T Consensus 298 ~~~~~~~~---------i~~~t~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 298 EWKRFGKR---------IRELTGGEDIDIVFEHPGR----ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp HHHHHHHH---------HHHHHTSCCEEEEEECSCH----HHHHHHHHHEEEEEEEEESC
T ss_pred HHHHHHHH---------HHHHhCCCCCcEEEEcCCc----hhHHHHHHHhhCCcEEEEEe
Confidence 0000000 0111134579999875543 35677788999999998854
No 380
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=90.55 E-value=0.18 Score=41.75 Aligned_cols=92 Identities=12% Similarity=0.146 Sum_probs=58.0
Q ss_pred ccCCCcEEEEcc-c-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC-CCCCccccccccc
Q 041459 56 IKGGELFLDYGT-G-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFPASMNERVDG 131 (225)
Q Consensus 56 ~~~~~~vlDiGc-G-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 131 (225)
+++|++|+-.|+ | .|..+..+++ .|. ++++++.++..++.+++ .+.. ....... ..+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~----~~~~~~~~~~~---------- 183 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAE----EAATYAEVPER---------- 183 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCS----EEEEGGGHHHH----------
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC----EEEECCcchhH----------
Confidence 668899999997 3 3666666665 455 89999999988777753 2321 1111100 000
Q ss_pred cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
.. .-..+|+++. ... ..+..+.+.|+++|.++...
T Consensus 184 ---------~~---~~~~~d~vid-~g~----~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 184 ---------AK---AWGGLDLVLE-VRG----KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp ---------HH---HTTSEEEEEE-CSC----TTHHHHHTTEEEEEEEEEC-
T ss_pred ---------HH---HhcCceEEEE-CCH----HHHHHHHHhhccCCEEEEEe
Confidence 00 0146999987 443 34677888999999988743
No 381
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=89.77 E-value=0.52 Score=39.35 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=55.6
Q ss_pred ccCCCcEEEEc-ccc-cHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC-CCccccccccc
Q 041459 56 IKGGELFLDYG-TGS-GILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT-FPASMNERVDG 131 (225)
Q Consensus 56 ~~~~~~vlDiG-cGt-G~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 131 (225)
+++|++||=.| +|. |.+++.+++. |+ ++++++ ++..++.+++ .+.. ......... +. .
T Consensus 150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~----lGa~----~~i~~~~~~~~~--------~ 211 (321)
T 3tqh_A 150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKA----LGAE----QCINYHEEDFLL--------A 211 (321)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHH----HTCS----EEEETTTSCHHH--------H
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHH----cCCC----EEEeCCCcchhh--------h
Confidence 56889999886 554 7777777764 55 788887 4544555543 3432 111111111 10 0
Q ss_pred cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
....+|+++-+..-. .+..+.++|+++|.++...
T Consensus 212 --------------~~~g~D~v~d~~g~~----~~~~~~~~l~~~G~iv~~g 245 (321)
T 3tqh_A 212 --------------ISTPVDAVIDLVGGD----VGIQSIDCLKETGCIVSVP 245 (321)
T ss_dssp --------------CCSCEEEEEESSCHH----HHHHHGGGEEEEEEEEECC
T ss_pred --------------hccCCCEEEECCCcH----HHHHHHHhccCCCEEEEeC
Confidence 124699998754432 2367889999999998753
No 382
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=89.69 E-value=2 Score=35.85 Aligned_cols=104 Identities=14% Similarity=0.081 Sum_probs=61.4
Q ss_pred CCCcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCC--CcceEEEecCCCCCccccccccccc
Q 041459 58 GGELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGP--KKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 58 ~~~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
...+|.=+|+|. | .++..+++.|. .|+.+ .+++.++..++. ++.. ....... .....
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~~----g~~~~~~~~~~~~-~~~~~------------ 78 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEAT----GLRLETQSFDEQV-KVSAS------------ 78 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHHH----CEEEECSSCEEEE-CCEEE------------
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHhC----CeEEEcCCCcEEE-eeeee------------
Confidence 457899999987 4 33445666664 68888 888777666543 2110 0011100 00000
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 188 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 188 (225)
+ .......+|+|+...+.......++.+...++++..++....+-..
T Consensus 79 ~--------~~~~~~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~ 125 (318)
T 3hwr_A 79 S--------DPSAVQGADLVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVEN 125 (318)
T ss_dssp S--------CGGGGTTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSH
T ss_pred C--------CHHHcCCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCc
Confidence 0 0001246899999888778888999999999999877665444433
No 383
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Probab=89.26 E-value=0.23 Score=42.13 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=53.9
Q ss_pred cCC-CcEEEEcccc---cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccc
Q 041459 57 KGG-ELFLDYGTGS---GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDG 131 (225)
Q Consensus 57 ~~~-~~vlDiGcGt---G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (225)
+++ ++|| +..|+ |..++.+++ .|+ ++++++.++.-++.+++ .+.. .........+ .+.+..
T Consensus 162 ~~g~~~vl-i~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~----~~~~~~~~~~----~~~v~~ 227 (349)
T 3pi7_A 162 QEGEKAFV-MTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKD----IGAA----HVLNEKAPDF----EATLRE 227 (349)
T ss_dssp HHCCSEEE-ESSTTSHHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHH----HTCS----EEEETTSTTH----HHHHHH
T ss_pred hCCCCEEE-EeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCC----EEEECCcHHH----HHHHHH
Confidence 345 4555 43344 444555554 465 79999999988888764 2321 1111111111 011111
Q ss_pred cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
. .....+|+++.+..... +..+.++|+++|.++..+
T Consensus 228 ~------------~~~~g~D~vid~~g~~~----~~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 228 V------------MKAEQPRIFLDAVTGPL----ASAIFNAMPKRARWIIYG 263 (349)
T ss_dssp H------------HHHHCCCEEEESSCHHH----HHHHHHHSCTTCEEEECC
T ss_pred H------------hcCCCCcEEEECCCChh----HHHHHhhhcCCCEEEEEe
Confidence 1 01246999987654332 366778999999998854
No 384
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=88.94 E-value=3.7 Score=35.81 Aligned_cols=95 Identities=18% Similarity=0.154 Sum_probs=57.1
Q ss_pred CCcEEEEcccc-cHHHH-HHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 59 GELFLDYGTGS-GILGI-AAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 59 ~~~vlDiGcGt-G~~~~-~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
...|+=+|+|. |.... .|.+.+ ..|+++|.++..++.++. .+. .+..+++... +.+...
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g-~~vvvId~d~~~v~~~~~----~g~-----~vi~GDat~~-----~~L~~a---- 64 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSG-VKMVVLDHDPDHIETLRK----FGM-----KVFYGDATRM-----DLLESA---- 64 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT-CCEEEEECCHHHHHHHHH----TTC-----CCEESCTTCH-----HHHHHT----
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHh----CCC-----eEEEcCCCCH-----HHHHhc----
Confidence 45688888765 32222 233445 459999999999887763 232 2455555332 111111
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
.....|+|++..+-......+....+.+.|+..++.
T Consensus 65 ---------gi~~A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iia 100 (413)
T 3l9w_A 65 ---------GAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIA 100 (413)
T ss_dssp ---------TTTTCSEEEECCSSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred ---------CCCccCEEEECCCChHHHHHHHHHHHHhCCCCeEEE
Confidence 345689888876655555555666677788877665
No 385
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Probab=88.61 E-value=0.37 Score=40.18 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=42.8
Q ss_pred CceeEEEeccch----hHHH----------HHHHHHHHhccCCeEEEEeccCCC--cHHHHHHHHHhhhhhhc
Q 041459 148 EKYDVVIANILL----NPLL----------QLADHIVSYAKPGAVVGISGILSE--QLPHIINRYSEFLEDIL 204 (225)
Q Consensus 148 ~~~DvIi~~~~~----~~~~----------~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~~~~~~ 204 (225)
+++|+|++|+.. +++. -++..+.+.|+|||.+++..+... ..+++.+.+++.|..+.
T Consensus 205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~F~~Vr 277 (320)
T 2hwk_A 205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSR 277 (320)
T ss_dssp CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEE
T ss_pred CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHhcceee
Confidence 679999997542 2211 246778899999999999888777 67888888888765443
No 386
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=88.11 E-value=0.42 Score=45.23 Aligned_cols=45 Identities=20% Similarity=0.140 Sum_probs=35.9
Q ss_pred CCCcEEEEcccccHHHHHHHhcC------CCeEEEEeCCHHHHHHHHHHHH
Q 041459 58 GGELFLDYGTGSGILGIAAIKFG------AAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~------~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
+..+|+|++||.|+++.-+.+.| ..-+.++|+++.+++.-+.|..
T Consensus 211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp 261 (784)
T 4ft4_B 211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP 261 (784)
T ss_dssp EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT
T ss_pred CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC
Confidence 34689999999999987665543 4568999999999988888753
No 387
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=87.90 E-value=7 Score=29.27 Aligned_cols=98 Identities=14% Similarity=0.080 Sum_probs=52.6
Q ss_pred CCcEEEEcccc-cHHHH-HHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 59 GELFLDYGTGS-GILGI-AAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 59 ~~~vlDiGcGt-G~~~~-~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+++|+=+|+|. |.... .+.+. +. .|+++|.++..++.++. .+. .....+.... +.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~----~g~-----~~~~gd~~~~-----~~------- 96 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRS----EGR-----NVISGDATDP-----DF------- 96 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHH----TTC-----CEEECCTTCH-----HH-------
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHH----CCC-----CEEEcCCCCH-----HH-------
Confidence 56888888765 33322 34445 54 59999999987766542 232 2333332211 00
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+........+|+|+...+-......+-...+.+.|++.++...
T Consensus 97 -----l~~~~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~ 139 (183)
T 3c85_A 97 -----WERILDTGHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIA 139 (183)
T ss_dssp -----HHTBCSCCCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred -----HHhccCCCCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEE
Confidence 0000013458988886554433333334555667777777643
No 388
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=87.88 E-value=11 Score=32.25 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=68.8
Q ss_pred CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
.+.+||.++-+-|.++..++ +..+++.+.-+-...+. +..+++.. .. ....+.
T Consensus 45 ~~~~~l~~n~~~g~~~~~~~--~~~~~~~~~~~~~~~~~----l~~~~~~~---~~-~~~~~~----------------- 97 (381)
T 3dmg_A 45 FGERALDLNPGVGWGSLPLE--GRMAVERLETSRAAFRC----LTASGLQA---RL-ALPWEA----------------- 97 (381)
T ss_dssp CSSEEEESSCTTSTTTGGGB--TTBEEEEEECBHHHHHH----HHHTTCCC---EE-CCGGGS-----------------
T ss_pred hCCcEEEecCCCCccccccC--CCCceEEEeCcHHHHHH----HHHcCCCc---cc-cCCccC-----------------
Confidence 45799999999998776553 22456666433322222 55677652 11 111000
Q ss_pred cccccCCCCCCceeEEEeccchh----HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459 138 SHEIRGISETEKYDVVIANILLN----PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 199 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (225)
....||+|+.-.|-. .....+.++...|+|||.+++.+-..+....+.+.++..
T Consensus 98 --------~~~~~d~v~~~~Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~~g~~~~~~~~~~~ 155 (381)
T 3dmg_A 98 --------AAGAYDLVVLALPAGRGTAYVQASLVAAARALRMGGRLYLAGDKNKGFERYFKEARAL 155 (381)
T ss_dssp --------CTTCEEEEEEECCGGGCHHHHHHHHHHHHHHEEEEEEEEEEEEGGGTHHHHHHHHHHH
T ss_pred --------CcCCCCEEEEECCcchhHHHHHHHHHHHHHhCCCCCEEEEEEccHHHHHHHHHHHHhh
Confidence 356799999988742 356678889999999999998765566666676666654
No 389
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=87.56 E-value=6 Score=28.17 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=25.8
Q ss_pred CCcEEEEcccccHHHHH----HHhcCCCeEEEEeCCHHHHHHHH
Q 041459 59 GELFLDYGTGSGILGIA----AIKFGAAMSVGVDIDPQAIKSAH 98 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~----l~~~~~~~v~~vDi~~~~l~~a~ 98 (225)
.++|+=+|+|. ++.. +.+.|. +++++|.+++.++.++
T Consensus 6 ~~~v~I~G~G~--iG~~la~~L~~~g~-~V~~id~~~~~~~~~~ 46 (141)
T 3llv_A 6 RYEYIVIGSEA--AGVGLVRELTAAGK-KVLAVDKSKEKIELLE 46 (141)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTC-CEEEEESCHHHHHHHH
T ss_pred CCEEEEECCCH--HHHHHHHHHHHCCC-eEEEEECCHHHHHHHH
Confidence 46788888865 4433 344454 6999999998877665
No 390
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=87.29 E-value=2.3 Score=31.22 Aligned_cols=101 Identities=19% Similarity=0.033 Sum_probs=52.8
Q ss_pred CCCcEEEEcccc-cHHHH-HHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGS-GILGI-AAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~~~-~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
.+.+|+=+|+|. |.... .+.+.|. +|+++|.++..++.++. ..+ ......+.... +.+...
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~---~~g-----~~~~~~d~~~~-----~~l~~~--- 80 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS---EFS-----GFTVVGDAAEF-----ETLKEC--- 80 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT---TCC-----SEEEESCTTSH-----HHHHTT---
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh---cCC-----CcEEEecCCCH-----HHHHHc---
Confidence 578899998865 43322 2444554 79999999865433210 111 22222222110 000000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
....+|+|+...+.......+..+.+.+.+...++.....
T Consensus 81 ----------~~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 81 ----------GMEKADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYD 120 (155)
T ss_dssp ----------TGGGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSS
T ss_pred ----------CcccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 1245899988766555555555555555666666664433
No 391
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A
Probab=87.16 E-value=1.4 Score=38.47 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=60.5
Q ss_pred ccCCCcEEEEcc-cc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccc-----
Q 041459 56 IKGGELFLDYGT-GS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNER----- 128 (225)
Q Consensus 56 ~~~~~~vlDiGc-Gt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 128 (225)
+++|++||=.|+ |. |..++.+++....++++++.++..++.+++ .+.. ..+...+.+.. ....+.
T Consensus 218 ~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~-~~~~~~~~~~~ 289 (447)
T 4a0s_A 218 MKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA----LGCD---LVINRAELGIT-DDIADDPRRVV 289 (447)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCC---CEEEHHHHTCC-TTGGGCHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCC---EEEeccccccc-ccccccccccc
Confidence 567899999987 33 666666666433578899999988887753 2322 11111111000 000000
Q ss_pred --ccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 129 --VDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 129 --~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
...+. ..+... ....+|+++.+... ..+....+.++++|.++...
T Consensus 290 ~~~~~~~-----~~v~~~-~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 290 ETGRKLA-----KLVVEK-AGREPDIVFEHTGR----VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHH-----HHHHHH-HSSCCSEEEECSCH----HHHHHHHHHSCTTCEEEESC
T ss_pred hhhhHHH-----HHHHHH-hCCCceEEEECCCc----hHHHHHHHHHhcCCEEEEEe
Confidence 00000 000011 13469999876554 24667778999999998854
No 392
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=87.13 E-value=0.61 Score=43.21 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=27.0
Q ss_pred CCceeEEEeccch------hHHHHHHHHHHHhccCCeEEEEe
Q 041459 147 TEKYDVVIANILL------NPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 147 ~~~~DvIi~~~~~------~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
...+|.++.+.-- -+-.+++..+.++++|||++.-.
T Consensus 177 ~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~ 218 (676)
T 3ps9_A 177 NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF 218 (676)
T ss_dssp TTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred CCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 4679999985421 12467889999999999998753
No 393
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=86.73 E-value=0.62 Score=40.77 Aligned_cols=43 Identities=19% Similarity=-0.091 Sum_probs=35.9
Q ss_pred CcEEEEcccccHHHHHHHhcC--CCe----EEEEeCCHHHHHHHHHHHH
Q 041459 60 ELFLDYGTGSGILGIAAIKFG--AAM----SVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~~l~~~~--~~~----v~~vDi~~~~l~~a~~~~~ 102 (225)
.+|+|++||.|.+...+.+.| ..- +.++|+++.+++.-+.|..
T Consensus 11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~ 59 (403)
T 4dkj_A 11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS 59 (403)
T ss_dssp EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence 589999999999988877665 344 8899999999988887765
No 394
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=86.63 E-value=0.78 Score=44.75 Aligned_cols=43 Identities=19% Similarity=0.069 Sum_probs=36.8
Q ss_pred CCcEEEEcccccHHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHH
Q 041459 59 GELFLDYGTGSGILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~ 101 (225)
..+++|++||.|.++.-+.+.|. ..+.++|+++.+.+.-+.|.
T Consensus 540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~ 583 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN 583 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC
T ss_pred CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC
Confidence 34899999999999998888886 56889999999988877764
No 395
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=86.17 E-value=5 Score=32.13 Aligned_cols=89 Identities=12% Similarity=0.066 Sum_probs=56.1
Q ss_pred CCcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 59 GELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 59 ~~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
+++|.=+|+|. | .++..+++.+...+++.|.+++.++.+.+.. ++ ... .+...
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~---g~-----~~~-~~~~~---------------- 64 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV---EA-----EYT-TDLAE---------------- 64 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT---TC-----EEE-SCGGG----------------
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc---CC-----cee-CCHHH----------------
Confidence 46788899875 3 2333455566555899999998776654431 21 111 11000
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
.....|+|+...+......+++.+...+++|.+++-
T Consensus 65 ---------~~~~~Dvvi~av~~~~~~~v~~~l~~~~~~~~ivv~ 100 (266)
T 3d1l_A 65 ---------VNPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVH 100 (266)
T ss_dssp ---------SCSCCSEEEECCCHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred ---------HhcCCCEEEEecCHHHHHHHHHHHHhhcCCCcEEEE
Confidence 123579999988777777788888888888876654
No 396
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=85.94 E-value=6.5 Score=31.63 Aligned_cols=85 Identities=14% Similarity=0.139 Sum_probs=53.6
Q ss_pred cEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459 61 LFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS 138 (225)
Q Consensus 61 ~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (225)
+|.=+|||. | .++..+++.+. +++++|.++..++.+.+ .+... .. .. ..
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~----~g~~~---~~-~~---~~----------------- 52 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVE----RQLVD---EA-GQ---DL----------------- 52 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTSCS---EE-ES---CG-----------------
T ss_pred EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHh----CCCCc---cc-cC---CH-----------------
Confidence 466788876 3 22334555554 69999999987766532 23210 11 10 00
Q ss_pred ccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEE
Q 041459 139 HEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 139 ~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~ 180 (225)
.. . ...|+|+...+......++..+...++++.+++
T Consensus 53 ---~~--~-~~~D~vi~av~~~~~~~~~~~l~~~~~~~~~vv 88 (279)
T 2f1k_A 53 ---SL--L-QTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVT 88 (279)
T ss_dssp ---GG--G-TTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred ---HH--h-CCCCEEEEECCHHHHHHHHHHHHhhCCCCCEEE
Confidence 00 2 458999998887777888888888888887654
No 397
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Probab=85.89 E-value=0.63 Score=39.64 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=57.1
Q ss_pred CCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCH---HHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 59 GELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDP---QAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 59 ~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~---~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
|++||-.|+|. |..++.+++ .|. +++++|.++ +.++.+++ .+.. . .. .+ .+. +.+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~----~ga~--~--v~-~~--~~~----~~~---- 240 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEE----TKTN--Y--YN-SS--NGY----DKL---- 240 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHH----HTCE--E--EE-CT--TCS----HHH----
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHH----hCCc--e--ec-hH--HHH----HHH----
Confidence 89999999853 455555554 566 899999988 77766653 2321 1 11 11 110 110
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHH-HHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLA-DHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~ 184 (225)
.. .. ..+|+++.+..... .+ +.+.+.|+++|.++....
T Consensus 241 --------~~-~~-~~~d~vid~~g~~~---~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 241 --------KD-SV-GKFDVIIDATGADV---NILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp --------HH-HH-CCEEEEEECCCCCT---HHHHHHGGGEEEEEEEEECSC
T ss_pred --------HH-hC-CCCCEEEECCCChH---HHHHHHHHHHhcCCEEEEEec
Confidence 00 02 56999998654321 34 677889999999987544
No 398
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=85.87 E-value=10 Score=29.24 Aligned_cols=93 Identities=12% Similarity=-0.068 Sum_probs=52.3
Q ss_pred cEEEEcccccHHHHHHH----hcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 61 LFLDYGTGSGILGIAAI----KFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 61 ~vlDiGcGtG~~~~~l~----~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
+|+=+|+ |.++..++ +.+ ..++++|.+++.++...+. .+ .....++.... +.+...
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g-~~v~vid~~~~~~~~l~~~---~~-----~~~i~gd~~~~-----~~l~~a---- 61 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRK-YGVVIINKDRELCEEFAKK---LK-----ATIIHGDGSHK-----EILRDA---- 61 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHH---SS-----SEEEESCTTSH-----HHHHHH----
T ss_pred EEEEECC--CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHH---cC-----CeEEEcCCCCH-----HHHHhc----
Confidence 4666665 44444433 344 4699999999877654322 12 23444444321 111110
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.-..+|++++..+-+.....+....+.+.+...++..
T Consensus 62 ---------~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~ 98 (218)
T 3l4b_C 62 ---------EVSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVSL 98 (218)
T ss_dssp ---------TCCTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEEEC
T ss_pred ---------CcccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEEEE
Confidence 2356899988776665555566666666676666653
No 399
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=85.76 E-value=12 Score=29.98 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=55.3
Q ss_pred cEEEEcccc-c-HHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 61 LFLDYGTGS-G-ILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 61 ~vlDiGcGt-G-~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
+|.=+|+|. | .++..+++.|. .+|++.|.++..++.+++ .+... .. ..+...
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~---~~-~~~~~~----------------- 57 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID---EG-TTSIAK----------------- 57 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS---EE-ESCGGG-----------------
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH----CCCcc---cc-cCCHHH-----------------
Confidence 577788876 3 23334555554 369999999987766542 23210 01 100000
Q ss_pred cccccCCCCCC-ceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459 138 SHEIRGISETE-KYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 138 ~~~~~~~~~~~-~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
... ..|+|+...+......++..+...++++.+++.
T Consensus 58 --------~~~~~aDvVilavp~~~~~~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 58 --------VEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTD 94 (281)
T ss_dssp --------GGGTCCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred --------HhcCCCCEEEEcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 123 579999988887777888888888999886655
No 400
>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}
Probab=85.24 E-value=2.3 Score=35.13 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=40.2
Q ss_pred CceeEEEeccc----hhHHH----------HHHHHHHHhccCCeEEEEeccCC--CcHHHHHHHHHhhhhhhc
Q 041459 148 EKYDVVIANIL----LNPLL----------QLADHIVSYAKPGAVVGISGILS--EQLPHIINRYSEFLEDIL 204 (225)
Q Consensus 148 ~~~DvIi~~~~----~~~~~----------~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~~~~~~ 204 (225)
++||+||+|.. .+++. -+-..+.+.|+|||.+++...+. ...+.+...+.+.|....
T Consensus 210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alARkF~~~r 282 (324)
T 3trk_A 210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRKFRSSR 282 (324)
T ss_dssp CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEE
T ss_pred CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecccccchHHHHHHHHhhheeee
Confidence 79999999854 24432 34566788999999999976654 345667777776665443
No 401
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=84.50 E-value=9.6 Score=30.83 Aligned_cols=88 Identities=14% Similarity=0.116 Sum_probs=55.6
Q ss_pred CcEEEEcccc-c-HHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 60 ELFLDYGTGS-G-ILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 60 ~~vlDiGcGt-G-~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
++|.=+|+|. | .++..+++.+ ..++++.|.++..++.+++ .+... ....+...
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~----~~~~~~~~---------------- 62 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIVD----EATADFKV---------------- 62 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSCS----EEESCTTT----------------
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCcc----cccCCHHH----------------
Confidence 5788888887 3 3333455554 3579999999987766543 23210 11111110
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHh-ccCCeEEE
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSY-AKPGAVVG 180 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~-LkpgG~l~ 180 (225)
.-...|+|+...+......++..+... ++++.+++
T Consensus 63 ---------~~~~aDvVilavp~~~~~~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 63 ---------FAALADVIILAVPIKKTIDFIKILADLDLKEDVIIT 98 (290)
T ss_dssp ---------TGGGCSEEEECSCHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred ---------hhcCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCEEE
Confidence 123579999988887778888888888 88886655
No 402
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=83.97 E-value=14 Score=29.95 Aligned_cols=101 Identities=20% Similarity=0.120 Sum_probs=56.9
Q ss_pred CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCc-ceEEEecCCCCCcccccccccccccc
Q 041459 60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKK-MKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
++|.=+|+|. | .++..+++.|. +|+.+|.+++.++..++. ++.... ............ ....
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~------~~~~---- 68 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKN----GLIADFNGEEVVANLPIFS------PEEI---- 68 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHH----CEEEEETTEEEEECCCEEC------GGGC----
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhC----CEEEEeCCCeeEecceeec------chhh----
Confidence 4688888876 3 22334555554 699999999877665533 211000 000000000000 0000
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
...-..+|+|+...+......+++.+...++++..++..
T Consensus 69 -------~~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~ 107 (316)
T 2ew2_A 69 -------DHQNEQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCL 107 (316)
T ss_dssp -------CTTSCCCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred -------cccCCCCCEEEEEeccccHHHHHHHHHHhcCCCCEEEEe
Confidence 001126899999888777788888888899988776654
No 403
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=83.90 E-value=4.4 Score=36.02 Aligned_cols=98 Identities=20% Similarity=0.248 Sum_probs=58.5
Q ss_pred CCCcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcc-----------eEEEecCCCCCcc
Q 041459 58 GGELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKM-----------KLHLVPDRTFPAS 124 (225)
Q Consensus 58 ~~~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 124 (225)
..++|.=+|+|. | .++..+++.|. +|+++|++++.++..++.. ..+....+ .+.+...
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~~~~v~~l~~~~--~~i~e~gl~~~l~~~~~~~~l~~ttd------ 77 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVDQAKIDILNNGG--VPIHEPGLKEVIARNRSAGRLRFSTD------ 77 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTC--CSSCCTTHHHHHHHHHHTTCEEEECC------
T ss_pred CCceEEEECcCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHCCC--CCcCCCCHHHHHHHhcccCCEEEECC------
Confidence 457888898886 3 23445666664 5999999998887765431 11100000 0111000
Q ss_pred ccccccccccccccccccCCCCCCceeEEEeccch----------hHHHHHHHHHHHhccCCeEEEEe
Q 041459 125 MNERVDGIVEDLSSHEIRGISETEKYDVVIANILL----------NPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~----------~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
... .-...|+|+...+- ......++.+...|++|.+++..
T Consensus 78 ----~~~--------------a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~ 127 (478)
T 2y0c_A 78 ----IEA--------------AVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDK 127 (478)
T ss_dssp ----HHH--------------HHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred ----HHH--------------HhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 000 01246888887554 56777888899999998877653
No 404
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=83.78 E-value=6.3 Score=34.61 Aligned_cols=41 Identities=32% Similarity=0.347 Sum_probs=26.8
Q ss_pred CCCcEEEEcccccHH--HHHHHhcCCCeEEEEeCCHHHHHHHHH
Q 041459 58 GGELFLDYGTGSGIL--GIAAIKFGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~--~~~l~~~~~~~v~~vDi~~~~l~~a~~ 99 (225)
.|.++-=+|+|.=.+ +..+++.| .+|+++|++++.++..++
T Consensus 10 ~~~~~~ViGlGyvGlp~A~~La~~G-~~V~~~D~~~~kv~~L~~ 52 (431)
T 3ojo_A 10 HGSKLTVVGLGYIGLPTSIMFAKHG-VDVLGVDINQQTIDKLQN 52 (431)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHT
T ss_pred cCCccEEEeeCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHC
Confidence 456666677776322 33456665 459999999988877654
No 405
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=83.72 E-value=6.1 Score=32.08 Aligned_cols=84 Identities=20% Similarity=0.258 Sum_probs=54.8
Q ss_pred CcEEEEcc-cc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 60 ELFLDYGT-GS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 60 ~~vlDiGc-Gt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
++|.=+|+ |. | .++..+++.+. +++++|.++..++.+.+ .++. . .+...
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~----~g~~-----~--~~~~~---------------- 63 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQG----MGIP-----L--TDGDG---------------- 63 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHH----TTCC-----C--CCSSG----------------
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHh----cCCC-----c--CCHHH----------------
Confidence 47888988 76 3 33334555554 69999999887766543 2321 1 01000
Q ss_pred ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEE
Q 041459 137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~ 180 (225)
.....|+|+...+......+++.+...++++.+++
T Consensus 64 ---------~~~~aDvVi~av~~~~~~~v~~~l~~~l~~~~ivv 98 (286)
T 3c24_A 64 ---------WIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVL 98 (286)
T ss_dssp ---------GGGTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred ---------HhcCCCEEEEcCCchHHHHHHHHHHHhCCCCCEEE
Confidence 12357999998887777888888888888887654
No 406
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Probab=83.67 E-value=0.74 Score=39.34 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=56.5
Q ss_pred ccCCCcEEEEc-ccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYG-TGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiG-cGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
+++|++||=.| +|. |..++.+++ .|. ++++++ ++..++.+++ .+.. . ........+ ...+
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~~----lGa~---~-v~~~~~~~~-------~~~~ 243 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVRK----LGAD---D-VIDYKSGSV-------EEQL 243 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHH----TTCS---E-EEETTSSCH-------HHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHHH----cCCC---E-EEECCchHH-------HHHH
Confidence 55789999998 453 677776666 454 799988 6666665532 3322 1 111111111 0000
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.....+|+++.+..-.. ..+....++++++|.++....
T Consensus 244 ------------~~~~g~D~vid~~g~~~--~~~~~~~~~l~~~G~iv~~g~ 281 (375)
T 2vn8_A 244 ------------KSLKPFDFILDNVGGST--ETWAPDFLKKWSGATYVTLVT 281 (375)
T ss_dssp ------------HTSCCBSEEEESSCTTH--HHHGGGGBCSSSCCEEEESCC
T ss_pred ------------hhcCCCCEEEECCCChh--hhhHHHHHhhcCCcEEEEeCC
Confidence 02246999987654331 234567788999999988543
No 407
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=83.56 E-value=9.2 Score=26.71 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=48.8
Q ss_pred CCcEEEEcccccHHHHH----HHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 59 GELFLDYGTGSGILGIA----AIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~----l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
+++|+=+|+|. ++.. +.+.+ .+++++|.++..++..+.. .+ +.....+.... +.+...
T Consensus 4 ~m~i~IiG~G~--iG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~~---~~-----~~~~~~d~~~~-----~~l~~~-- 65 (140)
T 1lss_A 4 GMYIIIAGIGR--VGYTLAKSLSEKG-HDIVLIDIDKDICKKASAE---ID-----ALVINGDCTKI-----KTLEDA-- 65 (140)
T ss_dssp -CEEEEECCSH--HHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---CS-----SEEEESCTTSH-----HHHHHT--
T ss_pred CCEEEEECCCH--HHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHh---cC-----cEEEEcCCCCH-----HHHHHc--
Confidence 45788777754 4433 33444 5699999998776555432 12 12222222111 000000
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEE
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~ 180 (225)
....+|+|+...+.......+..+.+.+.++.+++
T Consensus 66 -----------~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~ 100 (140)
T 1lss_A 66 -----------GIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIA 100 (140)
T ss_dssp -----------TTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred -----------CcccCCEEEEeeCCchHHHHHHHHHHHcCCCEEEE
Confidence 23468998887665544444555566677764443
No 408
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=82.87 E-value=2.2 Score=35.43 Aligned_cols=47 Identities=9% Similarity=-0.009 Sum_probs=34.4
Q ss_pred CceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHH
Q 041459 148 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIIN 194 (225)
Q Consensus 148 ~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 194 (225)
..+|+|+...+.......++.+...+.++..++....+-.....+.+
T Consensus 68 ~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~ 114 (312)
T 3hn2_A 68 GPMDLVLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNEEALAT 114 (312)
T ss_dssp CCCSEEEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHH
T ss_pred CCCCEEEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHH
Confidence 46899999888877888899999999999877765444433333433
No 409
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=82.77 E-value=2.1 Score=36.41 Aligned_cols=97 Identities=8% Similarity=0.127 Sum_probs=56.9
Q ss_pred cCCCcEEEEccc--ccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 57 KGGELFLDYGTG--SGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 57 ~~~~~vlDiGcG--tG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
++|++||=.|++ .|.+++.+++. |+ +++++. ++.-++.+++ .+.. .........+ .+.+...
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~----lGa~----~vi~~~~~~~----~~~v~~~- 227 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAKS----RGAE----EVFDYRAPNL----AQTIRTY- 227 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHH----TTCS----EEEETTSTTH----HHHHHHH-
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHH----cCCc----EEEECCCchH----HHHHHHH-
Confidence 678999999983 47777777764 55 688875 7777776653 3322 1221111111 1111111
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhc-cCCeEEEEec
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYA-KPGAVVGISG 183 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~ 183 (225)
..+.+|+++-+..-. ..++.+.+.| +++|.++...
T Consensus 228 ------------t~g~~d~v~d~~g~~---~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 228 ------------TKNNLRYALDCITNV---ESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp ------------TTTCCCEEEESSCSH---HHHHHHHHHSCTTCEEEEESS
T ss_pred ------------ccCCccEEEECCCch---HHHHHHHHHhhcCCCEEEEEe
Confidence 233599998654332 3456677788 6999988754
No 410
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=82.62 E-value=8.5 Score=33.87 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=61.5
Q ss_pred CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCc-----------ceEEEecCCCCCcccc
Q 041459 60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKK-----------MKLHLVPDRTFPASMN 126 (225)
Q Consensus 60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 126 (225)
++|.=+|+|. | .++..+++.| .+|+++|+++..++..++.. ....... -.+..... .
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G-~~V~~~D~~~~~v~~l~~g~--~~i~e~gl~~~l~~~~~~~~l~~t~d--~----- 72 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELG-ANVRCIDTDRNKIEQLNSGT--IPIYEPGLEKMIARNVKAGRLRFGTE--I----- 72 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTC--SCCCSTTHHHHHHHHHHTTSEEEESC--H-----
T ss_pred CEEEEECcCHHHHHHHHHHHhcC-CEEEEEECCHHHHHHHHcCC--CcccCCCHHHHHHhhcccCcEEEECC--H-----
Confidence 4577777775 3 2233455555 46999999998887765421 1110000 00111100 0
Q ss_pred ccccccccccccccccCCCCCCceeEEEeccchh----------HHHHHHHHHHHhccCCeEEEEec-cCCCcHHHHHHH
Q 041459 127 ERVDGIVEDLSSHEIRGISETEKYDVVIANILLN----------PLLQLADHIVSYAKPGAVVGISG-ILSEQLPHIINR 195 (225)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~----------~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~ 195 (225)
.. .-...|+|+...+-. .....++.+...|++|.+++... +.......+...
T Consensus 73 ---~e--------------a~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~ 135 (450)
T 3gg2_A 73 ---EQ--------------AVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKA 135 (450)
T ss_dssp ---HH--------------HGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHH
T ss_pred ---HH--------------HHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHH
Confidence 00 023468888865543 67778888999999998776643 333444445444
Q ss_pred HHh
Q 041459 196 YSE 198 (225)
Q Consensus 196 ~~~ 198 (225)
+.+
T Consensus 136 l~~ 138 (450)
T 3gg2_A 136 IQE 138 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 411
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}
Probab=82.31 E-value=2.2 Score=35.96 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=53.6
Q ss_pred ccCCCcEEEEcc-c-ccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 56 IKGGELFLDYGT-G-SGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGc-G-tG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
+++|++||=.|+ | .|.+++.+++. +..++++++ ++.-.+.++ .+.. .... ....+ .+.+...
T Consensus 140 ~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~ga~----~~~~-~~~~~----~~~~~~~ 204 (349)
T 4a27_A 140 LREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DSVT----HLFD-RNADY----VQEVKRI 204 (349)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GGSS----EEEE-TTSCH----HHHHHHH
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cCCc----EEEc-CCccH----HHHHHHh
Confidence 567899999998 3 36666777764 567899988 554444433 2322 1111 11111 1111111
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
..+.+|+++-+..-. .+..+.++|+++|.+++.+.
T Consensus 205 -------------~~~g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~G~ 239 (349)
T 4a27_A 205 -------------SAEGVDIVLDCLCGD----NTGKGLSLLKPLGTYILYGS 239 (349)
T ss_dssp -------------CTTCEEEEEEECC-----------CTTEEEEEEEEEEC-
T ss_pred -------------cCCCceEEEECCCch----hHHHHHHHhhcCCEEEEECC
Confidence 245799998754332 23577889999999987654
No 412
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*
Probab=82.19 E-value=3.1 Score=36.67 Aligned_cols=44 Identities=16% Similarity=0.316 Sum_probs=33.5
Q ss_pred CCcEEEEcccccHHHHHHHh----cC--CCeEEEEeCCHHHHHHHHHHHH
Q 041459 59 GELFLDYGTGSGILGIAAIK----FG--AAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~----~~--~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
..+|+|+|+|+|.++.-+++ .+ ..+|+.||+|+...+.-++.+.
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 187 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG 187 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence 47999999999998776543 22 3479999999987776666654
No 413
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=81.31 E-value=4.3 Score=35.24 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=30.8
Q ss_pred CcEEEEcccccHHHHHHHhc--------CCCeEEEEeCCHHHHHHHHHHH
Q 041459 60 ELFLDYGTGSGILGIAAIKF--------GAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~~l~~~--------~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
-.|+|+|+|+|.++..+.+. ...+|+.||+|+...+.-++.+
T Consensus 82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L 131 (387)
T 1zkd_A 82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL 131 (387)
T ss_dssp EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence 47999999999998765431 2347999999997766554443
No 414
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=81.09 E-value=1.9 Score=43.33 Aligned_cols=43 Identities=19% Similarity=0.071 Sum_probs=37.0
Q ss_pred CCcEEEEcccccHHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHH
Q 041459 59 GELFLDYGTGSGILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~ 101 (225)
..+++|++||.|.++.-+.+.|. ..+.++|+++.+.+.-+.|.
T Consensus 851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~ 894 (1330)
T 3av4_A 851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN 894 (1330)
T ss_dssp CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC
T ss_pred CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC
Confidence 45899999999999998888886 56899999999988877764
No 415
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=80.93 E-value=7.2 Score=31.75 Aligned_cols=96 Identities=14% Similarity=0.148 Sum_probs=56.4
Q ss_pred CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc---------CCCCCcce-----EEEecCCCCCc
Q 041459 60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN---------NIGPKKMK-----LHLVPDRTFPA 123 (225)
Q Consensus 60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~---------~~~~~~~~-----~~~~~~~~~~~ 123 (225)
++|.=+|+|+ | .++..++..|. +|+..|.+++.++.+++.+... ++...... +.... ..
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~--~~-- 79 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSD--DL-- 79 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEES--CH--
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeC--CH--
Confidence 4677788876 2 23334555664 6999999999988887654211 11100000 00000 00
Q ss_pred cccccccccccccccccccCCCCCCceeEEEeccchh--HHHHHHHHHHHhccCCeEEE
Q 041459 124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~~LkpgG~l~ 180 (225)
.. .-...|+|+...+-. ....++..+...++++.+++
T Consensus 80 ------~~--------------~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~ 118 (283)
T 4e12_A 80 ------AQ--------------AVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFA 118 (283)
T ss_dssp ------HH--------------HTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred ------HH--------------HhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEE
Confidence 00 124579999877654 56677888888899987664
No 416
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=80.23 E-value=20 Score=28.96 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=33.6
Q ss_pred CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
+|+++|=-|++.| .++..+++.|+ +|+.+|.+++.++.+.+.+...+
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g 57 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKG 57 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC
Confidence 5777777776665 23334556665 59999999999888877776655
No 417
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=79.66 E-value=9.6 Score=31.18 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=30.7
Q ss_pred CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
+|+++|=-|++.| .++..+++.|+ +|+.+|.+++.++.+.+.+
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~ 73 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI 73 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc
Confidence 6888888887776 23334566665 5999999998887765443
No 418
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=79.27 E-value=4.6 Score=32.12 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=57.7
Q ss_pred CcEEEEcccc-c-HHHHHHHhcCC---CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 60 ELFLDYGTGS-G-ILGIAAIKFGA---AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 60 ~~vlDiGcGt-G-~~~~~l~~~~~---~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
++|.=+|||. | .++..+++.+. .++++.|.+++.++.+.+.. ++. . . ... ..
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~---g~~-----~--~--~~~--------~e--- 59 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY---GLT-----T--T--TDN--------NE--- 59 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH---CCE-----E--C--SCH--------HH---
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh---CCE-----E--e--CCh--------HH---
Confidence 4677788886 3 33344555554 37999999998777665432 211 1 0 000 00
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHH
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 196 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (225)
.-...|+|+...+......+++.+...++++.+++ ++...-....+.+.+
T Consensus 60 -----------~~~~aDvVilav~~~~~~~v~~~l~~~l~~~~~vv-s~~~gi~~~~l~~~~ 109 (247)
T 3gt0_A 60 -----------VAKNADILILSIKPDLYASIINEIKEIIKNDAIIV-TIAAGKSIESTENAF 109 (247)
T ss_dssp -----------HHHHCSEEEECSCTTTHHHHC---CCSSCTTCEEE-ECSCCSCHHHHHHHH
T ss_pred -----------HHHhCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE-EecCCCCHHHHHHHh
Confidence 01246988888777777777888877888876554 444443444454443
No 419
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=78.84 E-value=1.4 Score=37.37 Aligned_cols=99 Identities=8% Similarity=0.063 Sum_probs=53.7
Q ss_pred ccCCCcEEEEcc-c-ccHHHHHHHh-cCCCeEEEEeCCHH---HHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccc
Q 041459 56 IKGGELFLDYGT-G-SGILGIAAIK-FGAAMSVGVDIDPQ---AIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERV 129 (225)
Q Consensus 56 ~~~~~~vlDiGc-G-tG~~~~~l~~-~~~~~v~~vDi~~~---~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (225)
+++|++||=.|+ | .|.+++.+++ .|+..+..++.++. ..+.++ ..+.. . +........ +.
T Consensus 165 ~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~----~lGa~--~--vi~~~~~~~-----~~- 230 (357)
T 1zsy_A 165 LQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK----SLGAE--H--VITEEELRR-----PE- 230 (357)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHH----HTTCS--E--EEEHHHHHS-----GG-
T ss_pred cCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHH----hcCCc--E--EEecCcchH-----HH-
Confidence 567899999997 4 3777777776 57666666666543 233343 23422 1 111100000 00
Q ss_pred cccccccccccccCCCCC-CceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 130 DGIVEDLSSHEIRGISET-EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~-~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
+...... ..+|+|+-...-.. .....++|+++|.++...
T Consensus 231 -----------~~~~~~~~~~~Dvvid~~g~~~----~~~~~~~l~~~G~iv~~G 270 (357)
T 1zsy_A 231 -----------MKNFFKDMPQPRLALNCVGGKS----STELLRQLARGGTMVTYG 270 (357)
T ss_dssp -----------GGGTTSSSCCCSEEEESSCHHH----HHHHHTTSCTTCEEEECC
T ss_pred -----------HHHHHhCCCCceEEEECCCcHH----HHHHHHhhCCCCEEEEEe
Confidence 0011111 25899987554322 235678999999998753
No 420
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=78.69 E-value=6.9 Score=33.28 Aligned_cols=98 Identities=10% Similarity=0.112 Sum_probs=59.9
Q ss_pred CCcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCcc--eEEEecCCCCCcccccccccc
Q 041459 59 GELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN--IGPKKM--KLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 59 ~~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 132 (225)
.++|.=+|+|. | .++..+++.|. +|+..|.++..++..++.-. +. +....+ .+.... ....
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~~~~~~~i~~~~~-~~~~l~g~~l~~~i~~t~----------d~~e- 95 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQ-KVRLWSYESDHVDEMQAEGV-NNRYLPNYPFPETLKAYC----------DLKA- 95 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTC-CEEEECSCHHHHHHHHHHSS-BTTTBTTCCCCTTEEEES----------CHHH-
T ss_pred CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCC-CcccCCCCccCCCeEEEC----------CHHH-
Confidence 46799999987 3 33445666664 59999999988776654311 11 110000 000000 0000
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.-...|+|+...|.......++.+...++++.+++..
T Consensus 96 -------------a~~~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs~ 132 (356)
T 3k96_A 96 -------------SLEGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWG 132 (356)
T ss_dssp -------------HHTTCCEEEECCCHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred -------------HHhcCCEEEECCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1235799999888888888999999999998776553
No 421
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=78.26 E-value=17 Score=26.27 Aligned_cols=99 Identities=11% Similarity=0.001 Sum_probs=52.9
Q ss_pred CCcEEEEcccccHHHHHH----HhcCCCeEEEEeCC-HHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 59 GELFLDYGTGSGILGIAA----IKFGAAMSVGVDID-PQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l----~~~~~~~v~~vDi~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
..+|+=+|+ |.++..+ .+.+ ..++++|.+ +...+...... ..+ +.+..++.... +.+...
T Consensus 3 ~~~vlI~G~--G~vG~~la~~L~~~g-~~V~vid~~~~~~~~~~~~~~-~~~-----~~~i~gd~~~~-----~~l~~a- 67 (153)
T 1id1_A 3 KDHFIVCGH--SILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRL-GDN-----ADVIPGDSNDS-----SVLKKA- 67 (153)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHH-CTT-----CEEEESCTTSH-----HHHHHH-
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCC-CCEEEEECCChHHHHHHHHhh-cCC-----CeEEEcCCCCH-----HHHHHc-
Confidence 356777776 4444443 3344 469999997 44443333221 112 33445444221 111110
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
.-...|+|++..+-+.....+....+.+.|...++....
T Consensus 68 ------------~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~ 106 (153)
T 1id1_A 68 ------------GIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVS 106 (153)
T ss_dssp ------------TTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECS
T ss_pred ------------ChhhCCEEEEecCChHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 234689888876655555556666677777777766433
No 422
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=78.10 E-value=4.7 Score=32.70 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=34.8
Q ss_pred CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
+|+++|==|++.| .++..+++.|+ +|+.+|.+++.++.+.+.+...+
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g 55 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMG 55 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC
Confidence 6888888887776 23344556665 59999999999988887776655
No 423
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=78.06 E-value=6.9 Score=33.54 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=53.8
Q ss_pred HHhhccCCCcEEEEcccccHHHHH-HHhcCCC-eEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccc
Q 041459 52 LQSLIKGGELFLDYGTGSGILGIA-AIKFGAA-MSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERV 129 (225)
Q Consensus 52 L~~~~~~~~~vlDiGcGtG~~~~~-l~~~~~~-~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (225)
|......|++|+-.|+|+...++. .+..+.. -...+|.+|. ++.....| ..+.+.. .+.+
T Consensus 312 l~~~k~~gk~v~~yGa~~~g~~l~~~~~~~~~~i~~~~D~~~~-----k~g~~~~g---~~ipi~~--p~~~-------- 373 (416)
T 4e2x_A 312 LHRLRAEGRSVVGYGATAKSATVTNFCGIGPDLVHSVYDTTPD-----KQNRLTPG---AHIPVRP--ASAF-------- 373 (416)
T ss_dssp HHHHHHTTCCEEEECCCSHHHHHHHHHTCCTTTSCCEEESCGG-----GTTEECTT---TCCEEEE--GGGC--------
T ss_pred HHHHHHcCCeEEEEccccHHHHHHHhcCCCcceeeEEEeCCcc-----ccCccCCC---CCCcCCC--HHHH--------
Confidence 333345789999999998555443 3443322 2457899882 11111111 1222322 1111
Q ss_pred cccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 130 DGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
...+.|.|+.- +.....++++++..++..||.+++-
T Consensus 374 ----------------~~~~~d~vl~~-~~~~~~ei~~~~~~~~~~g~~~~~~ 409 (416)
T 4e2x_A 374 ----------------SDPYPDYALLF-AWNHAEEIMAKEQEFHQAGGRWILY 409 (416)
T ss_dssp ----------------CSSCCSEEEES-CGGGHHHHHHHCHHHHHTTCEEEEC
T ss_pred ----------------hhcCCCEEEEe-cchhHHHHHHHHHHHHhcCCEEEEE
Confidence 23567865553 2333577888888888999998873
No 424
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=78.01 E-value=3.7 Score=34.13 Aligned_cols=47 Identities=11% Similarity=0.009 Sum_probs=33.5
Q ss_pred CceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHH
Q 041459 148 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIIN 194 (225)
Q Consensus 148 ~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 194 (225)
..+|+|+...+.......++.+...++++..++....+-...+.+.+
T Consensus 70 ~~~DlVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~ 116 (320)
T 3i83_A 70 TKPDCTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAA 116 (320)
T ss_dssp SCCSEEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHH
T ss_pred CCCCEEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHH
Confidence 36899999877777777888888999999877765454433333433
No 425
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=77.85 E-value=4.2 Score=34.21 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=24.4
Q ss_pred ccCC-CcEEEEcc-cc-cHHHHHHHh-cCCCeEEEEeCCHH
Q 041459 56 IKGG-ELFLDYGT-GS-GILGIAAIK-FGAAMSVGVDIDPQ 92 (225)
Q Consensus 56 ~~~~-~~vlDiGc-Gt-G~~~~~l~~-~~~~~v~~vDi~~~ 92 (225)
+++| ++||=.|+ |. |.+++.+++ .|+ +++++..++.
T Consensus 164 ~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~ 203 (364)
T 1gu7_A 164 LTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRP 203 (364)
T ss_dssp CCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCT
T ss_pred cCCCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCcc
Confidence 5678 99999987 43 677777776 465 5666664443
No 426
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=77.65 E-value=20 Score=28.63 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=28.9
Q ss_pred CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCC------------HHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDID------------PQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~------------~~~l~~a~~~~~~~~ 105 (225)
.++++|=-|++.| .++..+++.|. +++.+|.+ ...++.+...+...+
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG 70 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcC
Confidence 4677887776654 22333455564 59999987 666666655554443
No 427
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=77.61 E-value=21 Score=28.52 Aligned_cols=84 Identities=8% Similarity=0.023 Sum_probs=52.9
Q ss_pred cEEEEcccc-cH-HHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459 61 LFLDYGTGS-GI-LGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS 138 (225)
Q Consensus 61 ~vlDiGcGt-G~-~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (225)
+|.=+|+|. |. ++..+++ +. ++++.|.++...+.+.+. +.. .. +...
T Consensus 3 ~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~~~~~~~~~~~----g~~-----~~--~~~~------------------ 51 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRTFEKALRHQEE----FGS-----EA--VPLE------------------ 51 (289)
T ss_dssp CEEEECCSTTHHHHHHHHHT-TS-CEEEECSSTHHHHHHHHH----HCC-----EE--CCGG------------------
T ss_pred eEEEEcccHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHC----CCc-----cc--CHHH------------------
Confidence 577788887 43 3444566 64 599999998877665432 221 11 0000
Q ss_pred ccccCCCCCCceeEEEeccchh-HHHHHHHHHHHhccCCeEEEEe
Q 041459 139 HEIRGISETEKYDVVIANILLN-PLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 139 ~~~~~~~~~~~~DvIi~~~~~~-~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.....|+|+...+.. .....++.+...+++|..++..
T Consensus 52 -------~~~~~D~vi~~v~~~~~~~~v~~~l~~~l~~~~~vv~~ 89 (289)
T 2cvz_A 52 -------RVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDA 89 (289)
T ss_dssp -------GGGGCSEEEECCSSHHHHHHHHHHHTTTCCTTEEEEEC
T ss_pred -------HHhCCCEEEEeCCChHHHHHHHHHHHhhCCCCCEEEEC
Confidence 123579999887755 4666777787888888876653
No 428
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=77.22 E-value=18 Score=30.26 Aligned_cols=96 Identities=16% Similarity=0.081 Sum_probs=57.5
Q ss_pred CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh-------cCCCCCcc-------eEEEecCCCCCc
Q 041459 60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL-------NNIGPKKM-------KLHLVPDRTFPA 123 (225)
Q Consensus 60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~-------~~~~~~~~-------~~~~~~~~~~~~ 123 (225)
.+|.=+|+|+ | .++..+++.|. +|++.|.+++.++.+++.+.. .++..... .+.... .+
T Consensus 7 ~kI~vIGaG~MG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~l~~l~~~G~~~g~~~~~~~~~~i~~~~--~~-- 81 (319)
T 2dpo_A 7 GDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCT--NL-- 81 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEEC--CH--
T ss_pred ceEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHHHHHHHHcCccccccchHHHhhceEEeC--CH--
Confidence 5677888887 3 44445666665 599999999999888665321 22111000 011100 00
Q ss_pred cccccccccccccccccccCCCCCCceeEEEeccchh--HHHHHHHHHHHhccCCeEEE
Q 041459 124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVG 180 (225)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~~LkpgG~l~ 180 (225)
.. .-...|+|+.+.|-. ....++..+...++|+.+++
T Consensus 82 ------~e--------------av~~aDlVieavpe~~~~k~~v~~~l~~~~~~~~Ii~ 120 (319)
T 2dpo_A 82 ------AE--------------AVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLS 120 (319)
T ss_dssp ------HH--------------HTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEE
T ss_pred ------HH--------------HHhcCCEEEEeccCCHHHHHHHHHHHHhhCCCCeEEE
Confidence 00 124589999887643 34567888888898887664
No 429
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=77.19 E-value=3.7 Score=37.46 Aligned_cols=60 Identities=13% Similarity=0.226 Sum_probs=41.1
Q ss_pred CCCCceeEEEeccc----hhHH----------HHHHHHHHHhccCCeEEEEeccCC--CcHHHHHHHHHhhhhhhc
Q 041459 145 SETEKYDVVIANIL----LNPL----------LQLADHIVSYAKPGAVVGISGILS--EQLPHIINRYSEFLEDIL 204 (225)
Q Consensus 145 ~~~~~~DvIi~~~~----~~~~----------~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~~~~~~ 204 (225)
....+||+||+|.. +||+ .-+.....+.|||||.+++.+.+. ...+.+...+.+.|....
T Consensus 217 p~~~ryDlvfvn~~t~yr~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YGyADr~sE~vv~alaRkF~~~r 292 (670)
T 4gua_A 217 PPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVS 292 (670)
T ss_dssp CCCCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCSHHHHHHHHHHHHTEEEEE
T ss_pred CCCCcccEEEEecCCCcccchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEeeccccchHHHHHHHHhheeeee
Confidence 34579999999853 3443 234667889999999999987764 344566666666554333
No 430
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=77.04 E-value=9.5 Score=31.21 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=29.5
Q ss_pred CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHH
Q 041459 60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQN 100 (225)
Q Consensus 60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~ 100 (225)
++|.=+|+|. | .++..+++.|. +|+++|.+++.++.+++.
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~ 57 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKG 57 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH
Confidence 5688899987 3 24445666664 699999999988876553
No 431
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=76.70 E-value=15 Score=30.03 Aligned_cols=47 Identities=23% Similarity=0.200 Sum_probs=32.4
Q ss_pred CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
.++++|=.|++.| .++..+++.| .++++++.++..++.+.+.+...+
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~ 79 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRG-ARLVLSDVDQPALEQAVNGLRGQG 79 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcC
Confidence 5778888777755 2233345556 469999999998888777665544
No 432
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=76.08 E-value=13 Score=30.16 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=63.0
Q ss_pred CCcEEEEcccc-c-HHHHHHHhcCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 59 GELFLDYGTGS-G-ILGIAAIKFGA--AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 59 ~~~vlDiGcGt-G-~~~~~l~~~~~--~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.++|.=+|||. | .++..+++.+. .+++..|.++..++.+.+. .++ ... .+. ..
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~---~gi-----~~~-~~~-----------~~--- 59 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK---CGV-----HTT-QDN-----------RQ--- 59 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT---TCC-----EEE-SCH-----------HH---
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH---cCC-----EEe-CCh-----------HH---
Confidence 35688889987 3 23334555553 3799999999877666543 121 111 000 00
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHh-ccCCeEEEEeccCCCcHHHHHHHHH
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSY-AKPGAVVGISGILSEQLPHIINRYS 197 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~-LkpgG~l~~~~~~~~~~~~~~~~~~ 197 (225)
.-...|+|+...+......+++.+... ++++.++ ++....-....+.+.+.
T Consensus 60 -----------~~~~aDvVilav~p~~~~~vl~~l~~~~l~~~~ii-iS~~agi~~~~l~~~l~ 111 (280)
T 3tri_A 60 -----------GALNADVVVLAVKPHQIKMVCEELKDILSETKILV-ISLAVGVTTPLIEKWLG 111 (280)
T ss_dssp -----------HHSSCSEEEECSCGGGHHHHHHHHHHHHHTTTCEE-EECCTTCCHHHHHHHHT
T ss_pred -----------HHhcCCeEEEEeCHHHHHHHHHHHHhhccCCCeEE-EEecCCCCHHHHHHHcC
Confidence 123479999988777888888888888 7776444 45444444555555443
No 433
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=76.05 E-value=12 Score=31.04 Aligned_cols=33 Identities=18% Similarity=0.008 Sum_probs=26.0
Q ss_pred ceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459 149 KYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 149 ~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
..|+|++..+.....+.+..+...+++|.+++-
T Consensus 87 ~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~ 119 (317)
T 4ezb_A 87 CADVVLSLVVGAATKAVAASAAPHLSDEAVFID 119 (317)
T ss_dssp GCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred cCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEE
Confidence 469999988777666777888888999877654
No 434
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=75.90 E-value=5.6 Score=33.14 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=56.9
Q ss_pred CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCcceEEEecCCCCCccccccccccccc
Q 041459 60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG--PKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
++|.=+|+|. | .++..+++.+ .+|+++|.++..++..++.. ++. ....... ....... .....
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~----~~~~~---- 71 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKG-QSVLAWDIDAQRIKEIQDRG---AIIAEGPGLAGT-AHPDLLT----SDIGL---- 71 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHT---SEEEESSSCCEE-ECCSEEE----SCHHH----
T ss_pred CeEEEECCCHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHhcC---CeEEeccccccc-cccceec----CCHHH----
Confidence 5788889886 3 2333455555 46999999998777665431 110 0000000 0000000 00000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
....+|+|+...+......+++.+...++++..++..
T Consensus 72 ----------~~~~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 72 ----------AVKDADVILIVVPAIHHASIAANIASYISEGQLIILN 108 (359)
T ss_dssp ----------HHTTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred ----------HHhcCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEc
Confidence 0235899999887777788888888899998766553
No 435
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=75.87 E-value=15 Score=29.19 Aligned_cols=43 Identities=14% Similarity=0.065 Sum_probs=28.7
Q ss_pred CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
.++++|=-|++.| .++..+++.|. +++.++.++..++...+..
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~ 52 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF 52 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh
Confidence 5778888776655 22333455565 6999999998877665543
No 436
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}
Probab=74.53 E-value=2.8 Score=35.84 Aligned_cols=42 Identities=12% Similarity=-0.093 Sum_probs=30.9
Q ss_pred cCCCcEEEEcccccHH---HHHHHh-cCCCeEEEEeCCHHHHHHHHH
Q 041459 57 KGGELFLDYGTGSGIL---GIAAIK-FGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 57 ~~~~~vlDiGcGtG~~---~~~l~~-~~~~~v~~vDi~~~~l~~a~~ 99 (225)
++|++||=+|+|+|.+ ++.+++ .|+ ++++++.++.-++.+++
T Consensus 169 ~~g~~vlV~gag~G~vG~~a~q~a~~~Ga-~Vi~~~~~~~~~~~~~~ 214 (379)
T 3iup_A 169 LEGHSALVHTAAASNLGQMLNQICLKDGI-KLVNIVRKQEQADLLKA 214 (379)
T ss_dssp HTTCSCEEESSTTSHHHHHHHHHHHHHTC-CEEEEESSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHh
Confidence 5789999986555544 444555 466 69999999988888764
No 437
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=74.07 E-value=28 Score=27.45 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=36.5
Q ss_pred CCCcEEEEcc-ccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC
Q 041459 58 GGELFLDYGT-GSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD 118 (225)
Q Consensus 58 ~~~~vlDiGc-GtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 118 (225)
.++++|=.|+ |.| .++..+++.|. +++.++.++..++.+.+.+...+ ...+.....|.
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dl 82 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLG--LGRVEAVVCDV 82 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTC--SSCEEEEECCT
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcC--CCceEEEEeCC
Confidence 5778888877 555 23334556664 59999999988887776664333 12344544444
No 438
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=74.02 E-value=5.5 Score=33.57 Aligned_cols=43 Identities=23% Similarity=0.159 Sum_probs=32.0
Q ss_pred CCcEEEEccccc--HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459 59 GELFLDYGTGSG--ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA 102 (225)
Q Consensus 59 ~~~vlDiGcGtG--~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~ 102 (225)
..+|.=+|+|+= .++..++..|.. |+..|++++.++.+..++.
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~-V~l~D~~~~~l~~~~~~i~ 50 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFR-VKLYDIEPRQITGALENIR 50 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCC-EEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHHHHHH
Confidence 357888999983 344456666654 9999999999988877664
No 439
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=72.71 E-value=2.8 Score=35.16 Aligned_cols=38 Identities=26% Similarity=0.248 Sum_probs=29.4
Q ss_pred CceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459 148 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 185 (225)
Q Consensus 148 ~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (225)
..+|+|+...+.......++.+...++++..++....+
T Consensus 69 ~~~D~Vilavk~~~~~~~~~~l~~~l~~~~~iv~~~nG 106 (335)
T 3ghy_A 69 GEQDVVIVAVKAPALESVAAGIAPLIGPGTCVVVAMNG 106 (335)
T ss_dssp CCCSEEEECCCHHHHHHHHGGGSSSCCTTCEEEECCSS
T ss_pred CCCCEEEEeCCchhHHHHHHHHHhhCCCCCEEEEECCC
Confidence 45899999887777788888888888888877764333
No 440
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=72.56 E-value=32 Score=30.18 Aligned_cols=96 Identities=21% Similarity=0.312 Sum_probs=56.3
Q ss_pred CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc-------C-CCC---CcceEEEecCCCCCcccc
Q 041459 60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN-------N-IGP---KKMKLHLVPDRTFPASMN 126 (225)
Q Consensus 60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~-------~-~~~---~~~~~~~~~~~~~~~~~~ 126 (225)
++|.=+|+|+ | .++..+++.|. .|+++|.+++.++.++..+..+ + +.. ......... ..
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~--~~----- 109 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS--ST----- 109 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEES--CG-----
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcC--CH-----
Confidence 4688899987 3 33444555654 6999999999988876643210 1 000 000011100 00
Q ss_pred ccccccccccccccccCCCCCCceeEEEeccchhH--HHHHHHHHHHhccCCeEEEE
Q 041459 127 ERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--LLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~~LkpgG~l~~ 181 (225)
..-...|+||...+-.. ...++..+...++++.+++.
T Consensus 110 ------------------~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 110 ------------------KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp ------------------GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred ------------------HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEe
Confidence 01245799998776432 35677888888988877654
No 441
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=71.45 E-value=30 Score=26.83 Aligned_cols=92 Identities=5% Similarity=-0.078 Sum_probs=52.2
Q ss_pred CCcEEEEcccccHHHHHHHh----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 59 GELFLDYGTGSGILGIAAIK----FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~l~~----~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.+.|+=+|+ |.++..+++ .+ . ++++|.++..++.++ .+ +.+..++.... +.+...
T Consensus 9 ~~~viI~G~--G~~G~~la~~L~~~g-~-v~vid~~~~~~~~~~-----~~-----~~~i~gd~~~~-----~~l~~a-- 67 (234)
T 2aef_A 9 SRHVVICGW--SESTLECLRELRGSE-V-FVLAEDENVRKKVLR-----SG-----ANFVHGDPTRV-----SDLEKA-- 67 (234)
T ss_dssp -CEEEEESC--CHHHHHHHHHSTTSE-E-EEEESCGGGHHHHHH-----TT-----CEEEESCTTCH-----HHHHHT--
T ss_pred CCEEEEECC--ChHHHHHHHHHHhCC-e-EEEEECCHHHHHHHh-----cC-----CeEEEcCCCCH-----HHHHhc--
Confidence 456887777 555555443 23 3 999999998765553 22 23444444321 111100
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.-...|.+++..+-+.....+....+.+.|+..++..
T Consensus 68 -----------~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~ 104 (234)
T 2aef_A 68 -----------NVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAE 104 (234)
T ss_dssp -----------TCTTCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred -----------CcchhcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEEE
Confidence 2356888888666554444555566677887666654
No 442
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=71.00 E-value=5.3 Score=33.69 Aligned_cols=44 Identities=20% Similarity=0.387 Sum_probs=33.3
Q ss_pred hccCCCcEEEEcccc-cHHHHHHHh-c-CCCeEEEEeCCHHHHHHHHH
Q 041459 55 LIKGGELFLDYGTGS-GILGIAAIK-F-GAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 55 ~~~~~~~vlDiGcGt-G~~~~~l~~-~-~~~~v~~vDi~~~~l~~a~~ 99 (225)
.+++|++||=.|+|. |.+++.+++ . |. +++++|.++.-++.+++
T Consensus 183 ~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~~ 229 (359)
T 1h2b_A 183 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAER 229 (359)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHH
Confidence 356789999999864 555666665 4 55 79999999988887763
No 443
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=70.84 E-value=37 Score=26.85 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=29.6
Q ss_pred CCCcEEEEcccccHHHHH----HHhcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459 58 GGELFLDYGTGSGILGIA----AIKFGAAMSVGVDIDPQAIKSAHQNAALN 104 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~----l~~~~~~~v~~vDi~~~~l~~a~~~~~~~ 104 (225)
.++++|=-|++. .++.. +++.| .+++.+|.++..++.+.+.+...
T Consensus 9 ~~k~~lVTGas~-gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~ 57 (267)
T 3t4x_A 9 KGKTALVTGSTA-GIGKAIATSLVAEG-ANVLINGRREENVNETIKEIRAQ 57 (267)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhh
Confidence 467777766554 44443 44555 46999999998887776665543
No 444
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=70.82 E-value=20 Score=28.76 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=30.5
Q ss_pred CCCcEEEEcccccHHHH----HHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSGILGI----AAIKFGAAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~----~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
.++++|=-|++.| ++. .+++.|. +|+.++.++..++.+.+.+...+
T Consensus 32 ~gk~~lVTGas~G-IG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~ 81 (275)
T 4imr_A 32 RGRTALVTGSSRG-IGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASG 81 (275)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC
Confidence 5777777766554 443 3445565 69999999887777766665443
No 445
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=70.80 E-value=28 Score=27.64 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=26.3
Q ss_pred CCCcEEEEcccccHHHH----HHHhcCCCeEEEEeC-CHHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSGILGI----AAIKFGAAMSVGVDI-DPQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~----~l~~~~~~~v~~vDi-~~~~l~~a~~~~~~~~ 105 (225)
.++++|=-|++.| ++. .+++.|. +++.++. ++..++...+.+...+
T Consensus 17 ~~k~~lVTGas~g-IG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~ 67 (270)
T 3is3_A 17 DGKVALVTGSGRG-IGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALG 67 (270)
T ss_dssp TTCEEEESCTTSH-HHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC
Confidence 4677787776654 333 3455565 5777665 4555555555554433
No 446
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=70.67 E-value=8.9 Score=32.65 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=55.6
Q ss_pred CCCcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 58 GGELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 58 ~~~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
..++|.=||+|. | .++..+++.| .+|++.|.++..++.+.+ .+.. . .... ...+.
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~~G-~~V~v~dr~~~~~~~l~~----~g~~-----~----~~s~--------~e~~~- 77 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRKGG-HECVVYDLNVNAVQALER----EGIA-----G----ARSI--------EEFCA- 77 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHT----TTCB-----C----CSSH--------HHHHH-
T ss_pred cCCEEEEECchHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHH----CCCE-----E----eCCH--------HHHHh-
Confidence 357888888876 3 2333455566 469999999987765542 2211 0 0000 00000
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (225)
.....|+|++..+......++..+...|++|.+++-
T Consensus 78 ----------~a~~~DvVi~~vp~~~v~~vl~~l~~~l~~g~iiId 113 (358)
T 4e21_A 78 ----------KLVKPRVVWLMVPAAVVDSMLQRMTPLLAANDIVID 113 (358)
T ss_dssp ----------HSCSSCEEEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred ----------cCCCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence 123459999887766777788888889998877654
No 447
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=70.63 E-value=36 Score=26.95 Aligned_cols=47 Identities=13% Similarity=0.019 Sum_probs=32.9
Q ss_pred CCCcEEEEcccc--c---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGS--G---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGt--G---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
+|+++|=-|+++ | .++..+++.|+ +|+.++.++..++.+.+.+...+
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~ 56 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLN 56 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGT
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC
Confidence 588888888643 4 23444666775 59999999988888776665433
No 448
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=70.47 E-value=3.5 Score=34.79 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=58.4
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCC-CCCcccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR-TFPASMNERVDGI 132 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 132 (225)
+++|++||-+|+|. |.+++.+++ .|. +++++|.++..++.+++ .+.. ........ .+
T Consensus 177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~----lGa~----~v~~~~~~~~~----------- 236 (360)
T 1piw_A 177 CGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK----MGAD----HYIATLEEGDW----------- 236 (360)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCS----EEEEGGGTSCH-----------
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH----cCCC----EEEcCcCchHH-----------
Confidence 56789999999864 666666665 465 69999999988888764 2322 11111110 00
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 183 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (225)
...+ . +.+|+|+....... ...++.+.++|+++|.++...
T Consensus 237 --------~~~~-~-~~~D~vid~~g~~~-~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 237 --------GEKY-F-DTFDLIVVCASSLT-DIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp --------HHHS-C-SCEEEEEECCSCST-TCCTTTGGGGEEEEEEEEECC
T ss_pred --------HHHh-h-cCCCEEEECCCCCc-HHHHHHHHHHhcCCCEEEEec
Confidence 0011 1 46899887543300 122446677889999887643
No 449
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=70.21 E-value=29 Score=28.06 Aligned_cols=43 Identities=28% Similarity=0.250 Sum_probs=25.5
Q ss_pred CCCcEEEEcccccHHHH----HHHhcCCCeEEEEeCCHHH-HHHHHHHHH
Q 041459 58 GGELFLDYGTGSGILGI----AAIKFGAAMSVGVDIDPQA-IKSAHQNAA 102 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~----~l~~~~~~~v~~vDi~~~~-l~~a~~~~~ 102 (225)
+++++|=-|++.| ++. .+++.|. +++.++.++.. .+.+.+...
T Consensus 46 ~gk~vlVTGas~G-IG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~ 93 (291)
T 3ijr_A 46 KGKNVLITGGDSG-IGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVE 93 (291)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHH
Confidence 5778888776655 333 3445554 58899987653 333333333
No 450
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=69.74 E-value=25 Score=28.09 Aligned_cols=47 Identities=11% Similarity=0.026 Sum_probs=26.6
Q ss_pred CCCcEEEEccccc---HHHHHHHhcCCCeEEEE-eCCHHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGV-DIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~v-Di~~~~l~~a~~~~~~~~ 105 (225)
.++++|=-|++.| .++..+++.|.. ++.+ ..++..++...+.+...+
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G~~-Vv~~~~~~~~~~~~~~~~~~~~~ 76 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDGFT-VVINYAGKAAAAEEVAGKIEAAG 76 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHTCE-EEEEESSCSHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcC
Confidence 5778887776665 233345566655 5555 556666666555554443
No 451
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=69.25 E-value=25 Score=28.68 Aligned_cols=88 Identities=20% Similarity=0.223 Sum_probs=52.9
Q ss_pred CCcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459 59 GELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136 (225)
Q Consensus 59 ~~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
.++|.=+|+|. | .++..+++.|. +|++.|.++..++.+.+. +.. ....+...
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~----g~~-----~~~~~~~e---------------- 60 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAE----GAC-----GAAASARE---------------- 60 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----TCS-----EEESSSTT----------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHc----CCc-----cccCCHHH----------------
Confidence 35788888876 3 23334555554 699999999877765532 321 10111111
Q ss_pred ccccccCCCCCCceeEEEeccchh-HHHHHH---HHHHHhccCCeEEEE
Q 041459 137 SSHEIRGISETEKYDVVIANILLN-PLLQLA---DHIVSYAKPGAVVGI 181 (225)
Q Consensus 137 ~~~~~~~~~~~~~~DvIi~~~~~~-~~~~~l---~~~~~~LkpgG~l~~ 181 (225)
.-...|+|+...+.. .....+ +.+...+++|.+++-
T Consensus 61 ---------~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~ 100 (303)
T 3g0o_A 61 ---------FAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMV 100 (303)
T ss_dssp ---------TTTTCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEE
T ss_pred ---------HHhcCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEe
Confidence 123579998877754 445555 566778888877654
No 452
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=69.25 E-value=19 Score=31.02 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=31.3
Q ss_pred ceeEEEeccchh-----------HHHHHHHHHHHhccCCeEEEE-eccCCCcHHHHHHHH
Q 041459 149 KYDVVIANILLN-----------PLLQLADHIVSYAKPGAVVGI-SGILSEQLPHIINRY 196 (225)
Q Consensus 149 ~~DvIi~~~~~~-----------~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~~~~ 196 (225)
..|+|+...+-. .....++.+.. +++|.+++. +.........+.+.+
T Consensus 73 ~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~ 131 (402)
T 1dlj_A 73 EAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKF 131 (402)
T ss_dssp HCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHT
T ss_pred CCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHh
Confidence 468888865543 46777888888 899888776 555555555554443
No 453
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=69.14 E-value=28 Score=27.50 Aligned_cols=47 Identities=15% Similarity=0.062 Sum_probs=28.4
Q ss_pred CCCcEEEEccccc---HHHHHHHhcCCCeEEEE-eCCHHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGV-DIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~v-Di~~~~l~~a~~~~~~~~ 105 (225)
.++++|=-|++.| .++..+++.|.. ++.+ +.++...+.+.+.+...+
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~ 57 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEGAN-VVLTYNGAAEGAATAVAEIEKLG 57 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECSSCHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcC
Confidence 5778887777665 223335556654 6666 777777666665554433
No 454
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*
Probab=69.10 E-value=9.5 Score=34.33 Aligned_cols=93 Identities=16% Similarity=0.143 Sum_probs=57.4
Q ss_pred CC-CcEEEEccccc--HHHHHHHhc------CCCeEEEEeCCHHHHHHHHHHHHhcCCCC-CcceEEEecCCCCCccccc
Q 041459 58 GG-ELFLDYGTGSG--ILGIAAIKF------GAAMSVGVDIDPQAIKSAHQNAALNNIGP-KKMKLHLVPDRTFPASMNE 127 (225)
Q Consensus 58 ~~-~~vlDiGcGtG--~~~~~l~~~------~~~~v~~vDi~~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 127 (225)
.| ++|.=||+|.= .++..+.+. |..-+++.+.++...+.|+ ..++.. +.......+
T Consensus 52 ~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~----e~G~~v~d~ta~s~aE---------- 117 (525)
T 3fr7_A 52 KGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEAR----AAGFTEESGTLGDIWE---------- 117 (525)
T ss_dssp TTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH----HTTCCTTTTCEEEHHH----------
T ss_pred cCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHH----HCCCEEecCCCCCHHH----------
Confidence 67 89999999983 334445555 6543456666555555443 234331 000011000
Q ss_pred cccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.-...|+|+...|......++..+...|++|.++.+.
T Consensus 118 ------------------Aa~~ADVVILaVP~~~~~eVl~eI~p~LK~GaILs~A 154 (525)
T 3fr7_A 118 ------------------TVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLS 154 (525)
T ss_dssp ------------------HHHHCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEES
T ss_pred ------------------HHhcCCEEEECCChHHHHHHHHHHHHhcCCCCeEEEe
Confidence 1234799999888877777888899999999987663
No 455
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Probab=69.01 E-value=46 Score=27.19 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=25.3
Q ss_pred cEEEEcccc-cH-HHHHHHhcCC-CeEEEEeCCHHHHHHHH
Q 041459 61 LFLDYGTGS-GI-LGIAAIKFGA-AMSVGVDIDPQAIKSAH 98 (225)
Q Consensus 61 ~vlDiGcGt-G~-~~~~l~~~~~-~~v~~vDi~~~~l~~a~ 98 (225)
+|.=+|+|. |. ++..++..+. .+++.+|+++..++...
T Consensus 3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~ 43 (309)
T 1hyh_A 3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQ 43 (309)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHH
Confidence 577788876 32 2333555553 67999999987776544
No 456
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=68.87 E-value=15 Score=27.85 Aligned_cols=44 Identities=11% Similarity=0.012 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcc-CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeC
Q 041459 46 KLCLLLLQSLIK-GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDI 89 (225)
Q Consensus 46 ~~~~~~L~~~~~-~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi 89 (225)
+.++.+....+. -..-|+|+|-|+|..--++.+ .+..+|+++|-
T Consensus 27 R~~L~~a~~~v~~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR 72 (174)
T 3iht_A 27 RACLEHAIAQTAGLSGPVYELGLGNGRTYHHLRQHVQGREIYVFER 72 (174)
T ss_dssp HHHHHHHHHHTTTCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred HHHHHHHHHHhcCCCCceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence 334444433332 245799999999999888887 57788999995
No 457
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=68.70 E-value=11 Score=40.39 Aligned_cols=103 Identities=13% Similarity=0.005 Sum_probs=61.4
Q ss_pred ccCCCcEEEEcc-c-ccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGT-G-SGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGc-G-tG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||=.|+ | .|..++.+++....+|++++.++...+.+++.....+.. .+.......+ .+.+
T Consensus 1665 l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~----~v~~~~~~~~----~~~i---- 1732 (2512)
T 2vz8_A 1665 MQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDET----CFANSRDTSF----EQHV---- 1732 (2512)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCST----TEEESSSSHH----HHHH----
T ss_pred CCCCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCce----EEecCCCHHH----HHHH----
Confidence 567899998864 3 467777777643347999999988877776543212221 1111111100 0100
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
........+|+|+.... ...+....++|+++|.++..
T Consensus 1733 --------~~~t~g~GvDvVld~~g----~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A 1733 --------LRHTAGKGVDLVLNSLA----EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp --------HHTTTSCCEEEEEECCC----HHHHHHHHTTEEEEEEEEEC
T ss_pred --------HHhcCCCCceEEEECCC----chHHHHHHHhcCCCcEEEEe
Confidence 11113456999987543 34577888999999998764
No 458
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=68.68 E-value=33 Score=27.39 Aligned_cols=46 Identities=15% Similarity=0.051 Sum_probs=30.3
Q ss_pred CCCcEEEEcccccHHHH----HHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSGILGI----AAIKFGAAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~----~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
.++++|=-|++.| ++. .+++.|. +|+.++.++..++.+.+.+...+
T Consensus 3 ~~k~~lVTGas~G-IG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~ 52 (264)
T 3tfo_A 3 MDKVILITGASGG-IGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAG 52 (264)
T ss_dssp TTCEEEESSTTSH-HHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCccH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC
Confidence 3566776666654 333 3445564 59999999988887776665443
No 459
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=68.62 E-value=37 Score=26.67 Aligned_cols=59 Identities=14% Similarity=0.009 Sum_probs=34.0
Q ss_pred CCCcEEEEccc--cc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCC
Q 041459 58 GGELFLDYGTG--SG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR 119 (225)
Q Consensus 58 ~~~~vlDiGcG--tG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 119 (225)
.++++|=.|++ +| .++..+++.|. +++.++.++...+.+.+.....+- ..+.....|..
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~ 69 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDR--NDSIILPCDVT 69 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSS--CCCEEEECCCS
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCC--CCceEEeCCCC
Confidence 47788888876 44 23334556665 588999887666655554443331 13444444443
No 460
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=68.53 E-value=25 Score=24.37 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=22.2
Q ss_pred CCCcEEEEcccccHHHHH----HHhcCCCeEEEEeCCHHHHH
Q 041459 58 GGELFLDYGTGSGILGIA----AIKFGAAMSVGVDIDPQAIK 95 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~----l~~~~~~~v~~vDi~~~~l~ 95 (225)
++++|+=+|+| .++.. +.+.+. +++++|.++..++
T Consensus 5 ~~~~v~I~G~G--~iG~~~a~~l~~~g~-~v~~~d~~~~~~~ 43 (144)
T 2hmt_A 5 KNKQFAVIGLG--RFGGSIVKELHRMGH-EVLAVDINEEKVN 43 (144)
T ss_dssp -CCSEEEECCS--HHHHHHHHHHHHTTC-CCEEEESCHHHHH
T ss_pred cCCcEEEECCC--HHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 35678888875 44433 334454 5899999886543
No 461
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=68.46 E-value=20 Score=29.45 Aligned_cols=90 Identities=13% Similarity=0.079 Sum_probs=49.4
Q ss_pred CcEEEEcccc-cH-HHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 60 ELFLDYGTGS-GI-LGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 60 ~~vlDiGcGt-G~-~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++|+=+|+|. |. ++..++ .+ ..|+.++.++..++..++ .++. ... ++...+. .+..
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g-~~V~~~~r~~~~~~~l~~----~G~~-----~~~-~~~~~~~--------~~~~-- 60 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LY-HDVTVVTRRQEQAAAIQS----EGIR-----LYK-GGEEFRA--------DCSA-- 60 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TT-SEEEEECSCHHHHHHHHH----HCEE-----EEE-TTEEEEE--------CCEE--
T ss_pred CEEEEECCCHHHHHHHHHHh-cC-CceEEEECCHHHHHHHHh----CCce-----Eec-CCCeecc--------cccc--
Confidence 5788899997 43 344455 44 579999999876655543 2321 110 0000000 0000
Q ss_pred cccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCe
Q 041459 138 SHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGA 177 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG 177 (225)
.......+|+|+...........++.+... .++.
T Consensus 61 -----~~~~~~~~D~vilavK~~~~~~~l~~l~~~-~~~~ 94 (307)
T 3ego_A 61 -----DTSINSDFDLLVVTVKQHQLQSVFSSLERI-GKTN 94 (307)
T ss_dssp -----ESSCCSCCSEEEECCCGGGHHHHHHHTTSS-CCCE
T ss_pred -----cccccCCCCEEEEEeCHHHHHHHHHHhhcC-CCCe
Confidence 000245689999988777777777776653 4444
No 462
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=68.12 E-value=19 Score=28.64 Aligned_cols=43 Identities=9% Similarity=-0.066 Sum_probs=23.8
Q ss_pred CCCcEEEEcccccHHHHH----HHhcCCCeEEEEeCCH---HHHHHHHHHHH
Q 041459 58 GGELFLDYGTGSGILGIA----AIKFGAAMSVGVDIDP---QAIKSAHQNAA 102 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~----l~~~~~~~v~~vDi~~---~~l~~a~~~~~ 102 (225)
.++++|=-|++.| ++.. +++.|. +++.++.+. ..++...+.+.
T Consensus 10 ~~k~vlVTGas~G-IG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~ 59 (262)
T 3ksu_A 10 KNKVIVIAGGIKN-LGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELE 59 (262)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHH
Confidence 4677887776655 4444 344454 588876543 34444444443
No 463
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=67.95 E-value=44 Score=26.60 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=26.6
Q ss_pred CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCC-HHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDID-PQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~-~~~l~~a~~~~~~~~ 105 (225)
.++++|=-|++.| .++..+++.|. +++.++.+ ...++.....+...+
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~ 80 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAG 80 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcC
Confidence 5788888877665 22333555665 47777554 455555544444333
No 464
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=67.58 E-value=40 Score=26.87 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=30.6
Q ss_pred CCCcEEEEcccccHHHHH----HHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSGILGIA----AIKFGAAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~----l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
.++++|=-|++. .++.. +++.|. +|++++.++..++...+.+...+
T Consensus 27 ~~k~~lVTGas~-GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~ 76 (270)
T 3ftp_A 27 DKQVAIVTGASR-GIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAG 76 (270)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC
Confidence 466777666554 44443 445565 69999999988887766665544
No 465
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=67.55 E-value=45 Score=26.87 Aligned_cols=46 Identities=17% Similarity=0.044 Sum_probs=26.2
Q ss_pred CCCcEEEEcccccHHHHH----HHhcCCCeEEEEeCC--HHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSGILGIA----AIKFGAAMSVGVDID--PQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~----l~~~~~~~v~~vDi~--~~~l~~a~~~~~~~~ 105 (225)
.++++|=-|++.| ++.. +++.|. +++.++.+ ....+...+.....+
T Consensus 48 ~~k~vlVTGas~G-IG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~ 99 (294)
T 3r3s_A 48 KDRKALVTGGDSG-IGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECG 99 (294)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcC
Confidence 4678888776554 4433 445554 58888876 334444444444333
No 466
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=67.41 E-value=51 Score=27.10 Aligned_cols=91 Identities=5% Similarity=-0.075 Sum_probs=52.6
Q ss_pred CcEEEEcccccHHHHHHHh----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459 60 ELFLDYGTGSGILGIAAIK----FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED 135 (225)
Q Consensus 60 ~~vlDiGcGtG~~~~~l~~----~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (225)
+.++=+|+ |..+..+++ .+. ++++|.+++.++ ++. .+ +....++.... +.+...
T Consensus 116 ~~viI~G~--G~~g~~l~~~L~~~g~--v~vid~~~~~~~-~~~----~~-----~~~i~gd~~~~-----~~L~~a--- 173 (336)
T 1lnq_A 116 RHVVICGW--SESTLECLRELRGSEV--FVLAEDENVRKK-VLR----SG-----ANFVHGDPTRV-----SDLEKA--- 173 (336)
T ss_dssp CEEEEESC--CHHHHHHHTTGGGSCE--EEEESCGGGHHH-HHH----TT-----CEEEESCTTSH-----HHHHHT---
T ss_pred CCEEEECC--cHHHHHHHHHHHhCCc--EEEEeCChhhhh-HHh----CC-----cEEEEeCCCCH-----HHHHhc---
Confidence 46777665 556655543 343 999999998877 542 22 33555554332 111111
Q ss_pred cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.-...|.+++..+-+..........+.+.|...++..
T Consensus 174 ----------~i~~a~~vi~~~~~d~~n~~~~~~ar~~~~~~~iiar 210 (336)
T 1lnq_A 174 ----------NVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAE 210 (336)
T ss_dssp ----------CSTTEEEEEECCSSHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred ----------ChhhccEEEEcCCccHHHHHHHHHHHHHCCCCeEEEE
Confidence 3456898887665444444455566677787666664
No 467
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=66.65 E-value=30 Score=30.24 Aligned_cols=39 Identities=23% Similarity=0.133 Sum_probs=26.7
Q ss_pred CCcEEEEcccccHH--HHHHHhcCCCeEEEEeCCHHHHHHHHH
Q 041459 59 GELFLDYGTGSGIL--GIAAIKFGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 59 ~~~vlDiGcGtG~~--~~~l~~~~~~~v~~vDi~~~~l~~a~~ 99 (225)
-++|.=+|+|.=.. +..+++ | .+|+++|++++.++..++
T Consensus 36 ~mkIaVIGlG~mG~~lA~~La~-G-~~V~~~D~~~~~v~~l~~ 76 (432)
T 3pid_A 36 FMKITISGTGYVGLSNGVLIAQ-N-HEVVALDIVQAKVDMLNQ 76 (432)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT-T-SEEEEECSCHHHHHHHHT
T ss_pred CCEEEEECcCHHHHHHHHHHHc-C-CeEEEEecCHHHhhHHhc
Confidence 35788888876322 233444 4 579999999998877654
No 468
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=66.63 E-value=11 Score=31.96 Aligned_cols=87 Identities=13% Similarity=0.110 Sum_probs=52.2
Q ss_pred CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
.+|.=+|+|. | .++..+.+.| .+|++.|.++..++.+.+ .+.. .. .+.. +....
T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~G-~~V~~~dr~~~~~~~a~~----~G~~-----~~-~~~~-------e~~~~------ 64 (341)
T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAAN-HSVFGYNRSRSGAKSAVD----EGFD-----VS-ADLE-------ATLQR------ 64 (341)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT-CCEEEECSCHHHHHHHHH----TTCC-----EE-SCHH-------HHHHH------
T ss_pred CEEEEEeecHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH----cCCe-----ee-CCHH-------HHHHh------
Confidence 5688888875 3 3444555566 469999999988776643 3321 10 0000 00000
Q ss_pred cccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEE
Q 041459 138 SHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVV 179 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l 179 (225)
.....|+|+...|......+++.+..+ +||.++
T Consensus 65 --------a~~~aDlVilavP~~~~~~vl~~l~~~-~~~~iv 97 (341)
T 3ktd_A 65 --------AAAEDALIVLAVPMTAIDSLLDAVHTH-APNNGF 97 (341)
T ss_dssp --------HHHTTCEEEECSCHHHHHHHHHHHHHH-CTTCCE
T ss_pred --------cccCCCEEEEeCCHHHHHHHHHHHHcc-CCCCEE
Confidence 001359999988877777788887775 777543
No 469
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=66.58 E-value=41 Score=26.13 Aligned_cols=56 Identities=21% Similarity=0.182 Sum_probs=33.0
Q ss_pred CCCcEEEEcccccHHHHHH----Hh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC
Q 041459 58 GGELFLDYGTGSGILGIAA----IK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD 118 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l----~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 118 (225)
+++++|=.| |+|.++..+ ++ .| .++++++.++..++.+.+.+...+ ..+.+...|.
T Consensus 3 ~~k~vlITG-asggIG~~~a~~L~~~~g-~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl 63 (276)
T 1wma_A 3 GIHVALVTG-GNKGIGLAIVRDLCRLFS-GDVVLTARDVTRGQAAVQQLQAEG---LSPRFHQLDI 63 (276)
T ss_dssp CCCEEEESS-CSSHHHHHHHHHHHHHSS-SEEEEEESSHHHHHHHHHHHHHTT---CCCEEEECCT
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHhcC-CeEEEEeCChHHHHHHHHHHHhcC---CeeEEEECCC
Confidence 356677555 556665544 44 44 469999999877776665554433 2244444443
No 470
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=66.29 E-value=44 Score=25.90 Aligned_cols=42 Identities=26% Similarity=0.304 Sum_probs=27.8
Q ss_pred CCCcEEEEcccccHHHHH----HHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 58 GGELFLDYGTGSGILGIA----AIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~----l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
++++||=.|++.| ++.. +++.| .++++++.++..++...+.+
T Consensus 13 ~~k~vlVTGas~g-IG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~ 58 (249)
T 3f9i_A 13 TGKTSLITGASSG-IGSAIARLLHKLG-SKVIISGSNEEKLKSLGNAL 58 (249)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHh
Confidence 5778887766554 4443 44555 56999999988777665443
No 471
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1
Probab=66.15 E-value=43 Score=27.64 Aligned_cols=38 Identities=21% Similarity=0.113 Sum_probs=24.3
Q ss_pred cEEEEcccccH--HHHHHHhcC-CCeEEEEeCCHHHHHHHH
Q 041459 61 LFLDYGTGSGI--LGIAAIKFG-AAMSVGVDIDPQAIKSAH 98 (225)
Q Consensus 61 ~vlDiGcGtG~--~~~~l~~~~-~~~v~~vDi~~~~l~~a~ 98 (225)
+|.=+|+|.=. ++..++..+ ..+++.+|+++..++...
T Consensus 2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~ 42 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDA 42 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHH
Confidence 46778887622 223344444 347999999988776643
No 472
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=65.75 E-value=54 Score=26.82 Aligned_cols=36 Identities=25% Similarity=0.078 Sum_probs=22.9
Q ss_pred cEEEEcccccHH--HHHHHhcC-CCeEEEEeCCHHHHHH
Q 041459 61 LFLDYGTGSGIL--GIAAIKFG-AAMSVGVDIDPQAIKS 96 (225)
Q Consensus 61 ~vlDiGcGtG~~--~~~l~~~~-~~~v~~vDi~~~~l~~ 96 (225)
+|.=+|+|.-.. +..++..+ ..+++.+|+++..++.
T Consensus 2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~ 40 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQA 40 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHH
Confidence 466788876322 33344444 3479999999876653
No 473
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=65.71 E-value=43 Score=27.24 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=25.3
Q ss_pred CCcEEEEcccc-cHH-HHHHHhcCC-CeEEEEeCCHHHHH
Q 041459 59 GELFLDYGTGS-GIL-GIAAIKFGA-AMSVGVDIDPQAIK 95 (225)
Q Consensus 59 ~~~vlDiGcGt-G~~-~~~l~~~~~-~~v~~vDi~~~~l~ 95 (225)
.++|.=+|+|. |.. +..++..+. .+++.+|.++..++
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~ 46 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVE 46 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHH
Confidence 46899999986 332 333555553 37999999986665
No 474
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=65.67 E-value=3.9 Score=33.74 Aligned_cols=87 Identities=15% Similarity=0.046 Sum_probs=55.4
Q ss_pred ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133 (225)
Q Consensus 56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (225)
+++|++||-.|+|. |.+++.+++ .|+ ++++++ ++..++.+++ .+.. ... + + . +
T Consensus 140 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~----lGa~-----~v~-~-d-~-----~------ 194 (315)
T 3goh_A 140 LTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAK----RGVR-----HLY-R-E-P-----S------ 194 (315)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHH----HTEE-----EEE-S-S-G-----G------
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHH----cCCC-----EEE-c-C-H-----H------
Confidence 56789999999964 677777766 466 899999 8888888764 2321 111 1 1 1 0
Q ss_pred cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
. -...+|+++-...-. .+..+.++|+++|.++..
T Consensus 195 ---------~--v~~g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 195 ---------Q--VTQKYFAIFDAVNSQ----NAAALVPSLKANGHIICI 228 (315)
T ss_dssp ---------G--CCSCEEEEECC-----------TTGGGEEEEEEEEEE
T ss_pred ---------H--hCCCccEEEECCCch----hHHHHHHHhcCCCEEEEE
Confidence 0 145799998643322 235677899999998874
No 475
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=65.62 E-value=38 Score=26.94 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=29.6
Q ss_pred CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeC-------------CHHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDI-------------DPQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi-------------~~~~l~~a~~~~~~~~ 105 (225)
.++++|=-|++.| .++..+++.|. +++++|. ++..++.+.+.+...+
T Consensus 14 ~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (280)
T 3pgx_A 14 QGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG 76 (280)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcC
Confidence 5777887777665 22333455564 5889987 6777776665555443
No 476
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=65.38 E-value=51 Score=29.16 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=57.0
Q ss_pred CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc---CCCCCcce----------EEEecCCCCCcc
Q 041459 60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN---NIGPKKMK----------LHLVPDRTFPAS 124 (225)
Q Consensus 60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~---~~~~~~~~----------~~~~~~~~~~~~ 124 (225)
++|.=||+|+ | .++..+++.|. .|+..|.+++.++.+++.+..+ ......+. +.... ..
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~--~~--- 79 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASHGH-QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVT--DI--- 79 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEEC--CG---
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeC--CH---
Confidence 4577788887 2 34445666665 5999999999999887654311 00000000 11100 00
Q ss_pred ccccccccccccccccccCCCCCCceeEEEeccchh--HHHHHHHHHHHhccCCeEEEE
Q 041459 125 MNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVGI 181 (225)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~~LkpgG~l~~ 181 (225)
..-...|+||...+-. ....++.++...++++.+++.
T Consensus 80 --------------------~~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~Ilas 118 (483)
T 3mog_A 80 --------------------HALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTT 118 (483)
T ss_dssp --------------------GGGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred --------------------HHhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEe
Confidence 0123579998876544 345678888889999877643
No 477
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=65.37 E-value=27 Score=23.25 Aligned_cols=38 Identities=16% Similarity=0.007 Sum_probs=26.1
Q ss_pred CCcEEEEcccccHHHHH----HHhcCCCeEEEEeCCHHHHHHHH
Q 041459 59 GELFLDYGTGSGILGIA----AIKFGAAMSVGVDIDPQAIKSAH 98 (225)
Q Consensus 59 ~~~vlDiGcGtG~~~~~----l~~~~~~~v~~vDi~~~~l~~a~ 98 (225)
+++|+=+|+ |.++.. +.+.|..+++++|.++..++.+.
T Consensus 5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~ 46 (118)
T 3ic5_A 5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN 46 (118)
T ss_dssp CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH
T ss_pred cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence 467888888 444443 34456567999999987766554
No 478
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=65.07 E-value=21 Score=28.31 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=32.9
Q ss_pred CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
.++++|=-|++.| .++..+++.|. +|+.++.++..++.+.+.+...+
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~ 59 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTG 59 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcC
Confidence 5788888887766 23334555664 59999999988888776665544
No 479
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=64.89 E-value=4.8 Score=32.98 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=29.7
Q ss_pred CceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459 148 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 184 (225)
Q Consensus 148 ~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (225)
..+|+|+...+.......++.+...++++..++....
T Consensus 61 ~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~n 97 (294)
T 3g17_A 61 NTFDVIIIAVKTHQLDAVIPHLTYLAHEDTLIILAQN 97 (294)
T ss_dssp SCEEEEEECSCGGGHHHHGGGHHHHEEEEEEEEECCS
T ss_pred CCCCEEEEeCCccCHHHHHHHHHHhhCCCCEEEEecc
Confidence 5699999988888888888888889988877665433
No 480
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=64.61 E-value=18 Score=29.25 Aligned_cols=86 Identities=26% Similarity=0.242 Sum_probs=51.7
Q ss_pred CcEEEEcccc-cH-HHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 60 ELFLDYGTGS-GI-LGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 60 ~~vlDiGcGt-G~-~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++|.=+|+|. |. ++..+++.+. ++++.|.++...+.+++. ++ .. . ... ..
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~----g~-----~~--~--~~~--------~~------ 57 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAA----GA-----ET--A--STA--------KA------ 57 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----TC-----EE--C--SSH--------HH------
T ss_pred ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHC----CC-----ee--c--CCH--------HH------
Confidence 4688899987 32 2334555554 699999999877655432 21 11 0 000 00
Q ss_pred cccccCCCCCCceeEEEeccc-hhHHHHHH---HHHHHhccCCeEEEE
Q 041459 138 SHEIRGISETEKYDVVIANIL-LNPLLQLA---DHIVSYAKPGAVVGI 181 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~-~~~~~~~l---~~~~~~LkpgG~l~~ 181 (225)
.-...|+|+...+ .......+ +.+...+++|.+++-
T Consensus 58 --------~~~~~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~ 97 (299)
T 1vpd_A 58 --------IAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLID 97 (299)
T ss_dssp --------HHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEE
T ss_pred --------HHhCCCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEE
Confidence 0124799998877 44456566 567778899887654
No 481
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=64.56 E-value=16 Score=32.12 Aligned_cols=50 Identities=12% Similarity=0.029 Sum_probs=32.3
Q ss_pred ceeEEEeccc--hh---------HHHHHHHHHHHhccCCeEEEEe-ccCCCcHHHHHHHHHh
Q 041459 149 KYDVVIANIL--LN---------PLLQLADHIVSYAKPGAVVGIS-GILSEQLPHIINRYSE 198 (225)
Q Consensus 149 ~~DvIi~~~~--~~---------~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~~~~ 198 (225)
..|+|+...| .. .....++.+...|++|.+++.. ++.......+...+.+
T Consensus 84 ~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e 145 (446)
T 4a7p_A 84 DADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAE 145 (446)
T ss_dssp TCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence 4688887633 21 4677788899999999887764 3344445555555443
No 482
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}
Probab=64.49 E-value=43 Score=29.50 Aligned_cols=39 Identities=13% Similarity=-0.032 Sum_probs=28.0
Q ss_pred CcEEEEcccccH--HHHHHHhcC-CCeEEEEeCCHHHHHHHH
Q 041459 60 ELFLDYGTGSGI--LGIAAIKFG-AAMSVGVDIDPQAIKSAH 98 (225)
Q Consensus 60 ~~vlDiGcGtG~--~~~~l~~~~-~~~v~~vDi~~~~l~~a~ 98 (225)
++|.=+|+|.=. ++..+++.+ ..+|+++|++++.++..+
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~ 51 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWN 51 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence 478889998733 344566664 457999999998876654
No 483
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=63.96 E-value=15 Score=29.41 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=36.2
Q ss_pred CCCcEEEEcccccHHHH----HHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC
Q 041459 58 GGELFLDYGTGSGILGI----AAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD 118 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~----~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 118 (225)
.++++|=-|++.| ++. .+++.|. +|+.+|.++..++.+.+.+...+.....+.+...|.
T Consensus 10 ~~k~vlVTGas~g-IG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv 72 (281)
T 3svt_A 10 QDRTYLVTGGGSG-IGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDI 72 (281)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCT
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCC
Confidence 5677887776554 333 3455564 599999999888877766654443222344444443
No 484
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=63.61 E-value=25 Score=28.00 Aligned_cols=34 Identities=21% Similarity=0.156 Sum_probs=26.1
Q ss_pred CCCcEEEEcccc-cHH-HHHHHhcCCCeEEEEeCCH
Q 041459 58 GGELFLDYGTGS-GIL-GIAAIKFGAAMSVGVDIDP 91 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~-~~~l~~~~~~~v~~vDi~~ 91 (225)
.+.+|+=+|||. |.. +..|++.|..+++.+|.+.
T Consensus 30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 367899999985 433 3457778998999999886
No 485
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=63.58 E-value=54 Score=26.21 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=28.6
Q ss_pred CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459 58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101 (225)
Q Consensus 58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~ 101 (225)
.++++|=-|++.| .++..+++.|. +|+.+|.++..++.+.+.+
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~ 73 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKI 73 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc
Confidence 5777887776655 22334555665 6999999988777665443
No 486
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=63.53 E-value=46 Score=26.44 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=29.1
Q ss_pred CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeC-------------CHHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDI-------------DPQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi-------------~~~~l~~a~~~~~~~~ 105 (225)
.++++|=-|++.| .++..+++.|. +++++|. ++..++...+.+...+
T Consensus 10 ~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (277)
T 3tsc_A 10 EGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN 72 (277)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcC
Confidence 5778887776655 22333455665 5899988 6666666655554433
No 487
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=63.47 E-value=43 Score=26.50 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=28.4
Q ss_pred CCCcEEEEcccccHHHH----HHHhcCCCeEEEEeCC------------HHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSGILGI----AAIKFGAAMSVGVDID------------PQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~----~l~~~~~~~v~~vDi~------------~~~l~~a~~~~~~~~ 105 (225)
.++++|=-|++.| ++. .+++.|. +++++|.+ +..++...+.+...+
T Consensus 12 ~gk~vlVTGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (278)
T 3sx2_A 12 TGKVAFITGAARG-QGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG 73 (278)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcC
Confidence 5778887776554 333 3445554 58999987 666666555544443
No 488
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=63.29 E-value=54 Score=26.75 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=27.5
Q ss_pred CCCcEEEEcccccHHHH----HHHhcCCCeEEEEeCC------------HHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSGILGI----AAIKFGAAMSVGVDID------------PQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~----~l~~~~~~~v~~vDi~------------~~~l~~a~~~~~~~~ 105 (225)
.++++|=-|++.| ++. .+++.|. +++++|.+ +..++...+.+...+
T Consensus 45 ~gk~~lVTGas~G-IG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (317)
T 3oec_A 45 QGKVAFITGAARG-QGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG 106 (317)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcC
Confidence 4677777776654 333 3445554 58899876 556655555444433
No 489
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=63.26 E-value=47 Score=26.24 Aligned_cols=44 Identities=25% Similarity=0.220 Sum_probs=29.3
Q ss_pred CCCcEEEEcccccHHHH----HHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459 58 GGELFLDYGTGSGILGI----AAIKFGAAMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~----~l~~~~~~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
.++++|=-|++.| ++. .+++.|. +|+.++.++..++.+.+.+..
T Consensus 19 ~~k~vlVTGas~g-IG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~ 66 (266)
T 4egf_A 19 DGKRALITGATKG-IGADIARAFAAAGA-RLVLSGRDVSELDAARRALGE 66 (266)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHH
Confidence 4677777666554 443 3445564 599999999888777665543
No 490
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=63.24 E-value=15 Score=29.10 Aligned_cols=47 Identities=6% Similarity=-0.054 Sum_probs=31.9
Q ss_pred CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
.++++|=-|++.| .++..+++.|. +|++++.++..++.+.+.+...+
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~ 55 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG 55 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC
Confidence 4677887777665 22333455665 69999999988887777665543
No 491
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=63.00 E-value=24 Score=27.80 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=31.1
Q ss_pred CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459 58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN 104 (225)
Q Consensus 58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~ 104 (225)
.++++|=-|++.| .++..+++.|. +++.++.++..++.+.+.+...
T Consensus 6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~ 54 (250)
T 3nyw_A 6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRS 54 (250)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHh
Confidence 4677777776655 22334555665 6999999998888776665543
No 492
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=62.68 E-value=28 Score=28.15 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=52.4
Q ss_pred CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
++|.=+|+|. | .++..+++.|. ++++.|.++..++.+.+. +. .. . ... ..
T Consensus 4 ~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~----g~-----~~--~--~~~--------~~------ 55 (302)
T 2h78_A 4 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAA----GA-----SA--A--RSA--------RD------ 55 (302)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHT----TC-----EE--C--SSH--------HH------
T ss_pred CEEEEEeecHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHC----CC-----eE--c--CCH--------HH------
Confidence 5688889987 3 33344556664 699999999877665432 21 11 0 000 00
Q ss_pred cccccCCCCCCceeEEEeccch-hHHHHHHH---HHHHhccCCeEEEE
Q 041459 138 SHEIRGISETEKYDVVIANILL-NPLLQLAD---HIVSYAKPGAVVGI 181 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~-~~~~~~l~---~~~~~LkpgG~l~~ 181 (225)
.....|+|+...|. ......+. .+...++++.+++-
T Consensus 56 --------~~~~aDvvi~~vp~~~~~~~v~~~~~~~~~~l~~~~~vi~ 95 (302)
T 2h78_A 56 --------AVQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLE 95 (302)
T ss_dssp --------HHTTCSEEEECCSCHHHHHHHHHSSSCGGGSSCSSCEEEE
T ss_pred --------HHhCCCeEEEECCCHHHHHHHHcCchhHHhcCCCCcEEEE
Confidence 11346999988764 34566666 67778888877654
No 493
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}
Probab=61.90 E-value=41 Score=27.17 Aligned_cols=45 Identities=9% Similarity=0.102 Sum_probs=31.3
Q ss_pred CCCcEEEEcccccHHHH----HHHhcCC--CeEEEEeCCHHHHHHHHHHHHh
Q 041459 58 GGELFLDYGTGSGILGI----AAIKFGA--AMSVGVDIDPQAIKSAHQNAAL 103 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~----~l~~~~~--~~v~~vDi~~~~l~~a~~~~~~ 103 (225)
.++++|=-|++.| ++. .+++.|. .+++.++.++..++.+.+.+..
T Consensus 32 ~~k~~lVTGas~G-IG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~ 82 (287)
T 3rku_A 32 AKKTVLITGASAG-IGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQ 82 (287)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCh-HHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHh
Confidence 5788888887655 333 3444454 4799999999888877766654
No 494
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=61.85 E-value=12 Score=30.64 Aligned_cols=86 Identities=17% Similarity=0.238 Sum_probs=54.1
Q ss_pred CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459 60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS 137 (225)
Q Consensus 60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (225)
.+|.=+|+|. | .++..+++.|. +|++.|.++..++.+.+. +. .. . ... ..
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~----g~-----~~--~--~~~--------~~------ 67 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRIEAMTPLAEA----GA-----TL--A--DSV--------AD------ 67 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTSTT-CEEEECSSTTTSHHHHHT----TC-----EE--C--SSH--------HH------
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHC----CC-----EE--c--CCH--------HH------
Confidence 5788899887 3 23334555554 599999999877665432 21 11 0 000 00
Q ss_pred cccccCCCCCCceeEEEeccch-hHHHHHHHHHHHhccCCeEEEEe
Q 041459 138 SHEIRGISETEKYDVVIANILL-NPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 138 ~~~~~~~~~~~~~DvIi~~~~~-~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
-.. .|+|+...+. ......++.+...+++|.+++-.
T Consensus 68 --------~~~-aDvvi~~vp~~~~~~~v~~~l~~~l~~g~ivv~~ 104 (296)
T 3qha_A 68 --------VAA-ADLIHITVLDDAQVREVVGELAGHAKPGTVIAIH 104 (296)
T ss_dssp --------HTT-SSEEEECCSSHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred --------HHh-CCEEEEECCChHHHHHHHHHHHHhcCCCCEEEEe
Confidence 123 7999988774 45667778888889998776653
No 495
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=61.65 E-value=7.3 Score=32.98 Aligned_cols=39 Identities=15% Similarity=0.044 Sum_probs=25.3
Q ss_pred CCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHH
Q 041459 58 GGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAH 98 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~ 98 (225)
+.++|+=+||| ..+..+++. ....++.+|++...++.++
T Consensus 15 ~~mkilvlGaG--~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~ 55 (365)
T 3abi_A 15 RHMKVLILGAG--NIGRAIAWDLKDEFDVYIGDVNNENLEKVK 55 (365)
T ss_dssp -CCEEEEECCS--HHHHHHHHHHTTTSEEEEEESCHHHHHHHT
T ss_pred CccEEEEECCC--HHHHHHHHHHhcCCCeEEEEcCHHHHHHHh
Confidence 35689999985 444333321 2356899999998876654
No 496
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=60.76 E-value=13 Score=31.17 Aligned_cols=87 Identities=21% Similarity=0.104 Sum_probs=55.0
Q ss_pred CCCcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHH-HHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459 58 GGELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQA-IKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE 134 (225)
Q Consensus 58 ~~~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~-l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (225)
.+++|.=+|+|. | .++..++..|. ++++.|.++.. .+.++ ..++ ... +...
T Consensus 15 ~~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~~~~~~~a~----~~G~-----~~~--~~~e-------------- 68 (338)
T 1np3_A 15 QGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGSATVAKAE----AHGL-----KVA--DVKT-------------- 68 (338)
T ss_dssp HTSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTCHHHHHHH----HTTC-----EEE--CHHH--------------
T ss_pred cCCEEEEECchHHHHHHHHHHHHCcC-EEEEEECChHHHHHHHH----HCCC-----EEc--cHHH--------------
Confidence 367899999887 3 33444556664 58889987644 44443 2232 111 1000
Q ss_pred ccccccccCCCCCCceeEEEeccchhHHHHHHH-HHHHhccCCeEEEE
Q 041459 135 DLSSHEIRGISETEKYDVVIANILLNPLLQLAD-HIVSYAKPGAVVGI 181 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~-~~~~~LkpgG~l~~ 181 (225)
.....|+|+...|......++. .+...+++|.+++.
T Consensus 69 -----------~~~~aDvVilavp~~~~~~v~~~~i~~~l~~~~ivi~ 105 (338)
T 1np3_A 69 -----------AVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAF 105 (338)
T ss_dssp -----------HHHTCSEEEECSCHHHHHHHHHHHTGGGCCTTCEEEE
T ss_pred -----------HHhcCCEEEEeCCcHHHHHHHHHHHHhhCCCCCEEEE
Confidence 1124799999888877778887 88888999887764
No 497
>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*
Probab=60.46 E-value=24 Score=31.33 Aligned_cols=91 Identities=21% Similarity=0.225 Sum_probs=58.8
Q ss_pred CCCcEEEEcccccHH--HHHHHhcCCCeEEEEeCCHHHHH---HHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459 58 GGELFLDYGTGSGIL--GIAAIKFGAAMSVGVDIDPQAIK---SAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI 132 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~--~~~l~~~~~~~v~~vDi~~~~l~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (225)
++++|.=+|+|+=.. ++-|...|..-++|.- +..+. ...+++...|+. +.. ...
T Consensus 36 kgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr--~~s~~e~~~S~~~A~~~Gf~-----v~~--~~e------------ 94 (491)
T 3ulk_A 36 QGKKVVIVGCGAQGLNQGLNMRDSGLDISYALR--KEAIAEKRASWRKATENGFK-----VGT--YEE------------ 94 (491)
T ss_dssp TTSEEEEESCSHHHHHHHHHHHHTTCEEEEEEC--HHHHHTTCHHHHHHHHTTCE-----EEE--HHH------------
T ss_pred cCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeC--CCCcccccchHHHHHHCCCE-----ecC--HHH------------
Confidence 689999999999443 4445567776556653 33321 122334456643 211 000
Q ss_pred ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459 133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (225)
.-...|+|..-.|-.....+.+.+...||||..++|+
T Consensus 95 -------------A~~~ADvV~~L~PD~~q~~vy~~I~p~lk~G~~L~fa 131 (491)
T 3ulk_A 95 -------------LIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYS 131 (491)
T ss_dssp -------------HGGGCSEEEECSCGGGHHHHHHHHGGGSCTTCEEEES
T ss_pred -------------HHHhCCEEEEeCChhhHHHHHHHHHhhCCCCCEEEec
Confidence 2345799988777777777788899999999999985
No 498
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=60.25 E-value=18 Score=29.14 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=30.0
Q ss_pred CCCcEEEEcccccHHHH----HHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSGILGI----AAIKFGAAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~----~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
.++++|=-|++.| ++. .+++.|. +|++++.++..++.+.+.+...+
T Consensus 23 ~~k~~lVTGas~G-IG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~ 72 (279)
T 3sju_A 23 RPQTAFVTGVSSG-IGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAG 72 (279)
T ss_dssp --CEEEEESTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC
Confidence 4677887776654 333 3455564 59999999988887766665443
No 499
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=59.81 E-value=40 Score=27.38 Aligned_cols=42 Identities=14% Similarity=0.025 Sum_probs=28.2
Q ss_pred CCCcEEEEcccc-cHH-HHHHHhcCCCeEEEEeCCHHHHHHHHH
Q 041459 58 GGELFLDYGTGS-GIL-GIAAIKFGAAMSVGVDIDPQAIKSAHQ 99 (225)
Q Consensus 58 ~~~~vlDiGcGt-G~~-~~~l~~~~~~~v~~vDi~~~~l~~a~~ 99 (225)
.+++++=+|+|- |.. ...+++.|..+++.++.+++..+...+
T Consensus 119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~ 162 (272)
T 3pwz_A 119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRN 162 (272)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHH
T ss_pred cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 578999999872 222 223556787889999998865554433
No 500
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=59.65 E-value=20 Score=28.08 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=31.3
Q ss_pred CCCcEEEEcccccHHHH----HHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459 58 GGELFLDYGTGSGILGI----AAIKFGAAMSVGVDIDPQAIKSAHQNAALNN 105 (225)
Q Consensus 58 ~~~~vlDiGcGtG~~~~----~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~ 105 (225)
.++++|=.|++.| ++. .+++.|. +++.+|.++..++.+.+.+...+
T Consensus 8 ~~k~vlITGas~g-iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~ 57 (253)
T 3qiv_A 8 ENKVGIVTGSGGG-IGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADG 57 (253)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC
Confidence 4677887776554 433 3445564 59999999988888776665443
Done!