BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041460
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 246 bits (627), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/232 (52%), Positives = 156/232 (67%), Gaps = 4/232 (1%)
Query: 26 DVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDS 85
DV F +NY TW DH+ N G IQL +D+ +G+GF SK Y G F ++MKL DS
Sbjct: 14 DVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDS 73
Query: 86 AGIVTAFYLTSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADF 145
AG VTAFYL+SQ +HDE+DFEFLGNR G+P LQTNVF G G+REQR++LWFDPT +F
Sbjct: 74 AGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEF 133
Query: 146 HTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYP-SKPMQIEASLWNGESWATDGGRTK 204
H Y +LWN + IVF VDDVPIRVFKN + +GV +P ++PM+I +SLWN + WAT GG K
Sbjct: 134 HYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEK 193
Query: 205 IDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCYSSQYWWNSEKFWKLHSTQ 256
DW+ APF A ++ F I GC A + + WW+ ++F L + Q
Sbjct: 194 TDWSKAPFIASYRSFHIDGCEASVEAKFCATQ---GARWWDQKEFQDLDAFQ 242
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 184 bits (466), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 128/203 (63%), Gaps = 7/203 (3%)
Query: 25 SDVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKD 84
+ + FDQ Y WG H ++QG ++ + +D +SGSGF S Y SG+F +KL
Sbjct: 16 TSLGFDQGYTNLWGPQH-QRVDQG-SLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGY 73
Query: 85 SAGIVTAFYLTSQGD---KHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDP 141
+AG++T+FYL++ D KHDE+D EFLG GKP TLQTNVF G G+RE R+HLWFDP
Sbjct: 74 TAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDP 133
Query: 142 TADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGESWATDGG 201
T D+H Y I W P +I+F+VDDVPIR + +P +P+ + S+W+ SWAT+ G
Sbjct: 134 TQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSD--ATFPLRPLWVYGSVWDASSWATENG 191
Query: 202 RTKIDWTHAPFKAHFQGFDISGC 224
+ K D+ + PF ++ F + C
Sbjct: 192 KYKADYRYQPFVGKYEDFKLGSC 214
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 183 bits (465), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 137/236 (58%), Gaps = 18/236 (7%)
Query: 3 LSQFLGFFVFLLLSRVI-----------AAATKSDVKFDQNYYITWGNDHVLSLNQGRAI 51
LS FL L+ S ++ + + FDQ Y WG H ++QG ++
Sbjct: 6 LSIFLHLLPILMFSSSCLGQGPPSPGYYPSSQITSLGFDQGYTNLWGPQH-QRVDQG-SL 63
Query: 52 QLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQGD---KHDELDFEF 108
+ +D +SGSGF S Y SG+F +KL +AG++T+FYL++ D KHDE+D EF
Sbjct: 64 TIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEF 123
Query: 109 LGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRV 168
LG GKP TLQTNVF G G+RE R+HLWFDPT D+H Y I W P +I+F+VDDVPIR
Sbjct: 124 LGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRR 183
Query: 169 FKNLESIGVGYPSKPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDISGC 224
+ +P +P+ + S+W+ SWAT+ G+ K D+ + PF ++ F + C
Sbjct: 184 YPRKSD--ATFPLRPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSC 237
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 177 bits (450), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 128/208 (61%), Gaps = 12/208 (5%)
Query: 25 SDVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKD 84
+ + FDQ Y WG H ++QG ++ + +D +SGSGF S Y SG+F +KL
Sbjct: 15 TSLGFDQGYTNLWGPQH-QRVDQG-SLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGY 72
Query: 85 SAGIVTAFYLTSQGD---KHDELDFEFLGNREGKPITLQTNVFANGVGN-----REQRMH 136
+AG++T+FYL++ D KHDE+D EFLG GKP TLQTNVF G G+ RE R+H
Sbjct: 73 TAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIH 132
Query: 137 LWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGESW 196
LWFDPT D+H Y I W P +I+F+VDDVPIR + +P +PM + S+W+ SW
Sbjct: 133 LWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSD--ATFPLRPMWVYGSVWDASSW 190
Query: 197 ATDGGRTKIDWTHAPFKAHFQGFDISGC 224
AT+ G+ K D+ + PF ++ F + C
Sbjct: 191 ATENGKYKADYRYQPFVGKYEDFKLGSC 218
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 177 bits (449), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 128/208 (61%), Gaps = 12/208 (5%)
Query: 25 SDVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKD 84
+ + FDQ Y WG H ++QG ++ + +D +SGSGF S Y SG+F +KL
Sbjct: 18 TSLGFDQGYTNLWGPQH-QRVDQG-SLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGY 75
Query: 85 SAGIVTAFYLTSQGD---KHDELDFEFLGNREGKPITLQTNVFANGVGN-----REQRMH 136
+AG++T+FYL++ D KHDE+D EFLG GKP TLQTNVF G G+ RE R+H
Sbjct: 76 TAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIH 135
Query: 137 LWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGESW 196
LWFDPT D+H Y I W P +I+F+VDDVPIR + +P +P+ + S+W+ SW
Sbjct: 136 LWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSD--ATFPLRPLWVYGSVWDASSW 193
Query: 197 ATDGGRTKIDWTHAPFKAHFQGFDISGC 224
AT+ G+ K D+ + PF ++ F + C
Sbjct: 194 ATENGKYKADYRYQPFVGKYEDFKLGSC 221
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 84/165 (50%), Gaps = 20/165 (12%)
Query: 37 WGNDHVLSLNQGRAIQLSMDRSS-----GSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTA 91
W DHV + G ++LS+ S G G S YG G + + MK P K+ GIV+A
Sbjct: 21 WAFDHVSMTSLGE-MRLSLTSPSYNKFDGGGNQSVQTYGYGLYEVNMK-PAKN-VGIVSA 77
Query: 92 FYLTS---QGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFHTY 148
FY ++ G DE+D EFLG K +Q N + NGVGN E+ ++L FD +HTY
Sbjct: 78 FYTSTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANSYHTY 134
Query: 149 KILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNG 193
W P+ I +YVD K+ + + P P +I SLW G
Sbjct: 135 AFDWQPNSIKWYVDG----QLKHTATTQI--PQTPGKIYMSLWAG 173
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 88/167 (52%), Gaps = 20/167 (11%)
Query: 35 ITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLH-----YGSGFFHLKMKLPDKDSAGIV 89
TW ++V N G+ ++L + S+ + F + YG G + + MK P K++ GIV
Sbjct: 30 CTWRANNVNFTNDGK-LKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK-PAKNT-GIV 86
Query: 90 TAFYL---TSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFH 146
++F+ + G + DE+D EFLG K +Q N + NGVG E+ + L FD + FH
Sbjct: 87 SSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFH 143
Query: 147 TYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNG 193
TY W P I +YVD V K+ + + PS P +I +LWNG
Sbjct: 144 TYAFDWQPGYIKWYVDG----VLKHTATANI--PSTPGKIMMNLWNG 184
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 88/167 (52%), Gaps = 20/167 (11%)
Query: 35 ITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLH-----YGSGFFHLKMKLPDKDSAGIV 89
TW ++V N G+ ++L + S+ + F + YG G + + MK P K++ GIV
Sbjct: 32 CTWRANNVNFTNDGK-LKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK-PAKNT-GIV 88
Query: 90 TAFYL---TSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFH 146
++F+ + G + DE+D EFLG K +Q N + NGVG E+ + L FD + FH
Sbjct: 89 SSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFH 145
Query: 147 TYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNG 193
TY W P I +YVD V K+ + + PS P +I +LWNG
Sbjct: 146 TYAFDWQPGYIKWYVDG----VLKHTATANI--PSTPGKIMMNLWNG 186
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 14/128 (10%)
Query: 69 YGSGFFHLKMKLPDKDSAGIVTAFYL---TSQGDKHDELDFEFLGNREGKPITLQTNVFA 125
YG G + + MK P K++ GIV++F+ + G + DE+D EFLG K +Q N +
Sbjct: 12 YGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYT 66
Query: 126 NGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQ 185
NGVG E+ + L FD + FHTY W P I +YVD V K+ + + PS P +
Sbjct: 67 NGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANI--PSTPGK 120
Query: 186 IEASLWNG 193
I +LWNG
Sbjct: 121 IMMNLWNG 128
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 14/128 (10%)
Query: 69 YGSGFFHLKMKLPDKDSAGIVTAFYL---TSQGDKHDELDFEFLGNREGKPITLQTNVFA 125
YG G + + MK P K++ GIV++F+ + G + DE+D EFLG K +Q N +
Sbjct: 12 YGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYT 66
Query: 126 NGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQ 185
NGVG E+ + L FD + FHTY W P I +YVD V K+ + + PS P +
Sbjct: 67 NGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANI--PSTPGK 120
Query: 186 IEASLWNG 193
I +LWNG
Sbjct: 121 IMMNLWNG 128
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 14/128 (10%)
Query: 69 YGSGFFHLKMKLPDKDSAGIVTAFYL---TSQGDKHDELDFEFLGNREGKPITLQTNVFA 125
YG G + + MK P K++ GIV++F+ + G + DE+D EFLG K +Q N +
Sbjct: 12 YGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYT 66
Query: 126 NGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQ 185
NGVG E+ + L FD + FHTY W P I +YVD V K+ + + PS P +
Sbjct: 67 NGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANI--PSTPGK 120
Query: 186 IEASLWNG 193
I +LWNG
Sbjct: 121 IMMNLWNG 128
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 20/167 (11%)
Query: 35 ITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLH-----YGSGFFHLKMKLPDKDSAGIV 89
TW ++V N G+ ++L + S+ + F + YG G + + MK P K++ GIV
Sbjct: 32 CTWRANNVNFTNDGK-LKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK-PAKNT-GIV 88
Query: 90 TAFYL---TSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFH 146
++F+ + G + D++D +FLG K +Q N + NGVG E+ + L FD + FH
Sbjct: 89 SSFFTYTGPAHGTQWDQIDIQFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFH 145
Query: 147 TYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNG 193
TY W P I +YVD V K+ + + PS P +I +LWNG
Sbjct: 146 TYAFDWQPGYIKWYVDG----VLKHTATANI--PSTPGKIMMNLWNG 186
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 20/167 (11%)
Query: 35 ITWGNDHVLSLNQGRAIQLSMDRSSGSGFG-----SKLHYGSGFFHLKMKLPDKDSAGIV 89
TW ++V + G ++LS+ S + F S YG G + + MK P K+ GIV
Sbjct: 32 CTWRANNVSMTSLGE-MRLSLTSPSYNKFDCGENRSVQTYGYGLYEVNMK-PAKN-VGIV 88
Query: 90 TAFYL---TSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFH 146
++F+ + G DE+D EFLG K +Q N + NGVGN E+ ++L FD +H
Sbjct: 89 SSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANSYH 145
Query: 147 TYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNG 193
TY W P+ I +YVD K+ + + P P +I +LWNG
Sbjct: 146 TYAFDWQPNSIKWYVDG----QLKHTATTQI--PQTPGKIMMNLWNG 186
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 14/128 (10%)
Query: 69 YGSGFFHLKMKLPDKDSAGIVTAFYL---TSQGDKHDELDFEFLGNREGKPITLQTNVFA 125
YG G + ++MK P K++ GIV++F+ + G DE+D EFLG K +Q N +
Sbjct: 94 YGYGLYEVRMK-PAKNT-GIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYT 148
Query: 126 NGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQ 185
NG GN E+ + L FD +HTY W P+ I +YVD N P+ P +
Sbjct: 149 NGAGNHEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDGQLKHTATNQ------IPTTPGK 202
Query: 186 IEASLWNG 193
I +LWNG
Sbjct: 203 IMMNLWNG 210
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 61/112 (54%), Gaps = 12/112 (10%)
Query: 85 SAGIVTAFYL---TSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDP 141
+ GIV++F+ + G + DE+D EFLG K +Q N + NGVG E+ + L FD
Sbjct: 1 NTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDA 57
Query: 142 TADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNG 193
+ FHTY W P I +YVD V K+ + + PS P +I +LWNG
Sbjct: 58 SKGFHTYAFDWQPGYIKWYVDG----VLKHTATANI--PSTPGKIMMNLWNG 103
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 14/157 (8%)
Query: 40 DHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTS--- 96
D +L+L+ + S +G+ + ++ +G G + ++MK P K+ GIV++F+ +
Sbjct: 61 DGILNLSITDDMPSSSKPYAGAEYRTRDKFGYGLYQVRMK-PAKN-PGIVSSFFTYTGPV 118
Query: 97 QGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFHTYKILWNPHQ 156
G DE+D EFLG K +Q N + N GN E L FD + DFH Y W P+
Sbjct: 119 HGTPWDEIDIEFLGKDTTK---VQFNYYTNSAGNHEYIYDLRFDASEDFHIYAFNWQPNY 175
Query: 157 IVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNG 193
I + VD V++ + I P P +I ++W G
Sbjct: 176 IAWLVDGE--EVYRAYDDI----PVHPGKIMLNIWPG 206
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 53 LSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQGDKHD------ELDF 106
+SM SG+ + Y G F +MK+ ++G V++ +L G + E+D
Sbjct: 2 VSMKDFSGAELYTLEEYQYGKFEARMKM--AAASGTVSSMFLYQNGSEIADGRPWVEVDI 59
Query: 107 EFLGNREGKPITLQTNVFANGVG-NREQRMHLWFDPTAD--FHTYKILWNPHQIVFYVDD 163
E LG P + Q+N+ G + H P AD FHTY + W P+ + + VD
Sbjct: 60 EVLGK---SPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDG 116
Query: 164 VPIRVFKNLESIGVGYPSKPMQIEASLWNGESWA 197
+R E V + + +LW+ ES A
Sbjct: 117 QEVR---KTEGGQVSNLTGTQGLRFNLWSSESAA 147
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 128 VGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIE 187
VG E+ + L FD + FHTY W P I +YVD V K+ + + PS P +I
Sbjct: 1 VGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANI--PSTPGKIM 54
Query: 188 ASLWNG 193
+LWNG
Sbjct: 55 MNLWNG 60
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 14/101 (13%)
Query: 35 ITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLH-----YGSGFFHLKMKLPDKDSAGIV 89
TW ++V N G+ ++L + S+ + F + YG G + + MK P K++ GIV
Sbjct: 120 CTWRANNVNFTNDGK-LKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK-PAKNT-GIV 176
Query: 90 TAFYL---TSQGDKHDELDFEFLGNREGKPITLQTNVFANG 127
++F+ + G + DE+D EFLG K +Q N + NG
Sbjct: 177 SSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNG 214
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 72 GFFHLKMKLPDKDSAGIVTAFYLTSQGDKHD------ELDFEFLGNREGKPITLQTNVFA 125
G F +MK+ ++G V++ +L G + E+D E LG P + Q+N+
Sbjct: 19 GKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK---NPGSFQSNIIT 73
Query: 126 NGVGNREQRM-HLWFDPTAD--FHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSK 182
G ++ + H P AD FHTY + W P+ + + VD +R E V +
Sbjct: 74 GKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVR---KTEGGQVSNLTG 130
Query: 183 PMQIEASLWNGESWA 197
+ +LW+ ES A
Sbjct: 131 TQGLRFNLWSSESAA 145
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 72 GFFHLKMKLPDKDSAGIVTAFYLTSQGDKHD------ELDFEFLGNREGKPITLQTNVFA 125
G F +MK+ ++G V++ +L G + E+D E LG P + Q+N+
Sbjct: 18 GKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK---NPGSFQSNIIT 72
Query: 126 NGVG-NREQRMHLWFDPTAD--FHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSK 182
G + H P AD FHTY + W P+ + + VD +R E V +
Sbjct: 73 GKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVR---KTEGGQVSNLTG 129
Query: 183 PMQIEASLWNGESWA 197
+ +LW+ ES A
Sbjct: 130 TQGLRFNLWSSESAA 144
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 72 GFFHLKMKLPDKDSAGIVTAFYLTSQGDKHD------ELDFEFLGNREGKPITLQTNVFA 125
G F +MK+ ++G V++ L G + E+D E LG P + Q+N+
Sbjct: 19 GKFEARMKMAA--ASGTVSSMILYQNGSEIADGRPWVEVDIEVLGK---NPGSFQSNIIT 73
Query: 126 NGVG-NREQRMHLWFDPTAD--FHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSK 182
G + H P AD FHTY + W P+ + + VD +R E V +
Sbjct: 74 GKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVR---KTEGGQVSNLTG 130
Query: 183 PMQIEASLWNGESWA 197
+ +LW+ ES A
Sbjct: 131 TQGLRFNLWSSESAA 145
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 85 SAGIVTAFYLTSQGDKHD------ELDFEFLGNREGKPITLQTNVFANGVG-NREQRMHL 137
++G V++ +L G + E+D E LG P + Q+N+ G + H
Sbjct: 29 ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK---NPGSFQSNIITGKAGAQKTSEKHH 85
Query: 138 WFDPTAD--FHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGES 195
P AD FHTY + W P+ + + VD +R E V + + +LW+ ES
Sbjct: 86 AVSPAADQAFHTYGLEWTPNYVRWTVDGQEVR---KTEGGQVSNLTGTQGLRFNLWSSES 142
Query: 196 WA 197
A
Sbjct: 143 AA 144
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 85 SAGIVTAFYLTSQGDKHD------ELDFEFLGNREGKPITLQTNVFANGVG-NREQRMHL 137
++G V++ +L G + E+D E LG P + Q+N+ G + H
Sbjct: 32 ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK---NPGSFQSNIITGKAGAQKTSEKHH 88
Query: 138 WFDPTAD--FHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGES 195
P AD FHTY + W P+ + + VD +R E V + + +LW+ ES
Sbjct: 89 AVSPAADQAFHTYGLEWTPNYVRWTVDGQEVR---KTEGGQVSNLTGTQGLRFNLWSSES 145
Query: 196 WA 197
A
Sbjct: 146 AA 147
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 22/152 (14%)
Query: 65 SKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQGDKHDELDF-EFLG-NREGKPITLQTN 122
++L G G + LPD+ + G + Y G E+D E +G N + T+ T
Sbjct: 92 ARLPSGRGTWPAIWMLPDRQTYG---SAYWPDNG----EIDIAEHVGFNPDVVHGTVHTK 144
Query: 123 VFANGVGNREQRMHLWFDPTA--DFHTYKILWNPHQIVFYVDD-----VPIRVFKNLESI 175
+ + +G QR PTA DFH Y I W P +I ++VDD P N E+
Sbjct: 145 AYNHLLGT--QRGGSIRVPTARTDFHVYAIEWTPEEIRWFVDDSLYYRFPNERLTNPEAD 202
Query: 176 GVGYP-SKPMQIEASLWNGESWATDGGRTKID 206
+P +P + ++ G +W GG+ +D
Sbjct: 203 WRHWPFDQPFHLIMNIAVGGTW---GGQQGVD 231
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 77 KMKLPDKDSAGIVTAFYLTSQGDKH------DELDF-EFLGNREGKPITLQTNVFANGVG 129
++KLP G+ AF++ + E+D EFLG+ +P T+ V G
Sbjct: 107 RIKLPK--GKGLWPAFWMLGSNIREVGWPNCGEIDIMEFLGH---EPRTIHGTVHGPGYS 161
Query: 130 NREQRMHLWFDP------TADFHTYKILWNPHQIVFYVD 162
+ + P T DFH + I+W P +I +YVD
Sbjct: 162 GSKGITRAYTLPEGVPDFTEDFHVFGIVWYPDKIKWYVD 200
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 100 KHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFHTYKILWNPHQIVF 159
+ + D + + GKP + F N HL FDP DFHTY + +I +
Sbjct: 150 RESDHDLHNIVVKNGKPTWXRPGSFPQTNHNG---YHLPFDPRNDFHTYGVNVTKDKITW 206
Query: 160 YVD 162
YVD
Sbjct: 207 YVD 209
>pdb|1UPS|A Chain A, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
pdb|1UPS|B Chain B, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
Length = 420
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 140 DPTADFHTYKILWNPHQIVFYVDDVPIRVF 169
DPT+++H Y + W P + FY D+ +V
Sbjct: 209 DPTSEYHIYAMEWTPTALKFYYDNELFKVI 238
>pdb|4F40|A Chain A, X-Ray Crystal Structure Of Apo Prostaglandin F Synthase
From Leishmania Major Friedlin
pdb|4F40|B Chain B, X-Ray Crystal Structure Of Apo Prostaglandin F Synthase
From Leishmania Major Friedlin
pdb|4G5D|A Chain A, X-Ray Crystal Structure Of Prostaglandin F Synthase From
Leishmania Major Friedlin Bound To Nadph
pdb|4G5D|B Chain B, X-Ray Crystal Structure Of Prostaglandin F Synthase From
Leishmania Major Friedlin Bound To Nadph
Length = 288
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 124 FANGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGV-----G 178
+NGV + + +W P + + W ++D I +KN ES+G G
Sbjct: 15 LSNGVKMPQFGLGVWQSPAGEVTENAVKWALCAGYRHIDTAAI--YKNEESVGAGLRASG 72
Query: 179 YPSKPMQIEASLWNGE 194
P + + I LWN E
Sbjct: 73 VPREDVFITTKLWNTE 88
>pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna
Length = 763
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 141 PTADFHTYKILWNPHQIV---FYVDDVPIRVFKNLESIGVGYPSK 182
P D HT K L++ +Q V +Y+ +P+ + E IG G+ K
Sbjct: 389 PPKDDHTLKFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCK 433
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 145 FHTYKILWNPHQIVFYVDDVPIRVFKNLESIG 176
FHT+ + W P I + VD V + + + ++ G
Sbjct: 168 FHTFAVDWRPGSITWSVDGVAYQTYTSADTRG 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,672,925
Number of Sequences: 62578
Number of extensions: 387158
Number of successful extensions: 730
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 672
Number of HSP's gapped (non-prelim): 32
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)