Query 041460
Match_columns 262
No_of_seqs 224 out of 1678
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:20:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 3E-65 6.5E-70 461.6 30.4 255 6-262 4-261 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 4.3E-64 9.3E-69 450.9 28.9 233 26-262 3-239 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 1.8E-45 4E-50 320.1 25.7 179 32-223 9-201 (203)
4 cd02175 GH16_lichenase lichena 100.0 8.1E-40 1.8E-44 285.8 25.3 176 31-222 23-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 1.5E-36 3.3E-41 258.0 21.2 174 30-220 2-185 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 4.4E-35 9.6E-40 253.4 24.2 172 34-222 24-210 (210)
7 cd02178 GH16_beta_agarase Beta 100.0 1.2E-34 2.7E-39 260.3 22.5 181 35-223 53-258 (258)
8 cd08023 GH16_laminarinase_like 100.0 5.6E-34 1.2E-38 251.7 22.5 178 34-222 32-235 (235)
9 cd02180 GH16_fungal_KRE6_gluca 100.0 3.8E-32 8.3E-37 248.2 20.1 184 34-223 35-295 (295)
10 cd02177 GH16_kappa_carrageenas 100.0 3.3E-31 7.1E-36 239.3 22.0 171 39-223 43-269 (269)
11 cd02182 GH16_Strep_laminarinas 100.0 7.2E-31 1.6E-35 236.0 20.1 181 36-223 42-259 (259)
12 cd08024 GH16_CCF Coelomic cyto 100.0 3.1E-29 6.6E-34 232.8 21.9 136 60-197 101-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 100.0 3.8E-28 8.2E-33 224.6 17.9 133 60-194 98-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 100.0 7E-27 1.5E-31 218.2 19.4 179 31-221 70-262 (355)
15 PF03935 SKN1: Beta-glucan syn 99.7 2.4E-17 5.2E-22 158.5 13.9 77 142-224 365-454 (504)
16 cd02181 GH16_fungal_Lam16A_glu 99.5 2.5E-13 5.4E-18 123.6 12.9 141 49-197 49-251 (293)
17 PF13385 Laminin_G_3: Concanav 95.0 0.73 1.6E-05 36.1 12.0 69 142-227 84-152 (157)
18 PF06955 XET_C: Xyloglucan end 94.1 0.026 5.5E-07 38.5 1.3 25 237-262 1-26 (51)
19 PF02973 Sialidase: Sialidase, 90.5 9.6 0.00021 33.0 12.9 135 68-227 31-178 (190)
20 smart00560 LamGL LamG-like jel 89.8 2.8 6.1E-05 33.4 8.7 70 141-227 59-131 (133)
21 smart00210 TSPN Thrombospondin 88.4 10 0.00023 32.1 11.6 29 142-170 116-144 (184)
22 PF09264 Sial-lect-inser: Vibr 88.3 0.92 2E-05 39.1 4.9 28 143-170 92-121 (198)
23 PF10287 DUF2401: Putative TOS 82.7 6.1 0.00013 35.3 7.4 76 74-155 103-207 (235)
24 PF06439 DUF1080: Domain of Un 82.5 2.9 6.3E-05 34.6 5.3 108 59-172 42-156 (185)
25 PF14099 Polysacc_lyase: Polys 81.3 34 0.00074 29.4 12.1 69 141-221 150-224 (224)
26 cd00152 PTX Pentraxins are pla 80.9 9.7 0.00021 32.7 8.1 78 141-228 88-167 (201)
27 cd00110 LamG Laminin G domain; 77.9 31 0.00068 27.0 16.2 85 70-168 20-105 (151)
28 smart00159 PTX Pentraxin / C-r 62.0 1E+02 0.0022 26.4 15.9 78 141-228 88-167 (206)
29 smart00282 LamG Laminin G doma 54.2 68 0.0015 24.9 7.1 27 142-168 61-87 (135)
30 KOG1834 Calsyntenin [Extracell 53.8 15 0.00033 37.6 3.8 52 142-197 441-492 (952)
31 PF09224 DUF1961: Domain of un 44.5 92 0.002 27.6 6.8 59 143-221 159-218 (218)
32 KOG1691 emp24/gp25L/p24 family 39.4 2.1E+02 0.0044 25.3 8.1 55 50-109 61-119 (210)
33 cd06482 ACD_HspB10 Alpha cryst 33.9 58 0.0012 24.4 3.4 45 39-83 21-65 (87)
34 PF02210 Laminin_G_2: Laminin 32.6 2.1E+02 0.0045 21.2 9.9 74 142-222 53-126 (128)
35 PF07172 GRP: Glycine rich pro 30.0 49 0.0011 25.4 2.5 6 4-9 3-8 (95)
36 cd06526 metazoan_ACD Alpha-cry 29.7 74 0.0016 23.0 3.4 44 37-83 18-61 (83)
37 PF00354 Pentaxin: Pentaxin fa 29.3 1.7E+02 0.0037 25.0 6.1 78 141-228 82-161 (195)
38 PF15145 DUF4577: Domain of un 26.2 55 0.0012 26.1 2.2 17 6-22 64-80 (128)
39 PF06832 BiPBP_C: Penicillin-B 25.9 74 0.0016 23.3 2.8 34 155-190 43-77 (89)
40 PF07691 PA14: PA14 domain; I 25.6 98 0.0021 24.2 3.7 29 141-170 57-85 (145)
41 KOG4352 Fas-mediated apoptosis 24.6 1.5E+02 0.0033 24.9 4.6 25 145-169 104-128 (187)
42 KOG0674 Calreticulin [Posttran 21.9 7E+02 0.015 23.7 11.9 24 145-168 170-194 (406)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=3e-65 Score=461.65 Aligned_cols=255 Identities=44% Similarity=0.846 Sum_probs=224.7
Q ss_pred hHHHHHHHHHHHhhhhcccCCcccccCceeeEeCCCeEEeCCCceEEEEeeCCCcceEEEceeeEeEEEEEEEEecCCCC
Q 041460 6 FLGFFVFLLLSRVIAAATKSDVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDS 85 (262)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~nv~~~~~G~~L~Ltl~~~sga~i~S~~~f~YG~~EaR~K~p~g~~ 85 (262)
+|+||++||+..+..--.-+..+|.++|..+|+.+|+.+.++|+.|+|+|++.+|++|+||+.|+||+||+|||+|+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~s 83 (291)
T PLN03161 4 LKTLLVALFAALAAFDRSFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNS 83 (291)
T ss_pred HHHHHHHHHHHHHhcCCCcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCC
Confidence 45555555444332111112567999999999999999987888899999999999999999999999999999999877
Q ss_pred CceEEEEEEeecCCCCCceEEEEcCCCCCCCcEEEeeEeeCCcCCcceeEeccCCCCCCcEEEEEEEcCCeEEEEECCee
Q 041460 86 AGIVTAFYLTSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVP 165 (262)
Q Consensus 86 ~G~~~Afwl~~~~~~~~EIDiE~lG~~~g~p~~~~tn~~~~g~~~~~~~~~l~~d~~~~fHtY~i~Wtpd~I~fyVDG~~ 165 (262)
+|+||||||++.++.++|||||++|+++++|+++|+|+|.+|.+++++++.+++|++++||+|+|+|+|++|+|||||++
T Consensus 84 aG~v~AFwl~s~~~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~ 163 (291)
T PLN03161 84 AGTVTAYYLSSTGSRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTP 163 (291)
T ss_pred CCeEEEEEecCCCCCCCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEE
Confidence 99999999998766799999999999888899999999999988899889999999999999999999999999999999
Q ss_pred EEEEEecccCCCCCCC-CCcEEEEEeecCCCCCCCCCcccccCCCCceEEEEeEEEEeeccCCCCCCccccccCC--Ccc
Q 041460 166 IRVFKNLESIGVGYPS-KPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCYS--SQY 242 (262)
Q Consensus 166 vr~~~~~~~~~~~~P~-~Pm~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~~~~~~~v~~c~~~~~~~~~~~~c~~--~~~ 242 (262)
||++++.+..+.+||+ +||+|++|||.|++||++||+++|||+++||+|.+++|++.+|.+++ +.+...|.+ +..
T Consensus 164 iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~--~~~~~~c~~~~~~~ 241 (291)
T PLN03161 164 IRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNG--PVSIKQCADPTPSN 241 (291)
T ss_pred EEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCC--CCCccccCCCCccc
Confidence 9999877666778998 79999999999999999999999999999999999999999999873 212357975 467
Q ss_pred cccccccccCCHHHHHHhcC
Q 041460 243 WWNSEKFWKLHSTQKAKYEN 262 (262)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~ 262 (262)
||+++.+++|+.+|+++|+|
T Consensus 242 ~~~~~~~~~l~~~~~~~~~~ 261 (291)
T PLN03161 242 WWTSPSYSQLTNAQLTQMKK 261 (291)
T ss_pred cccCccccCCCHHHHHHHHH
Confidence 99999999999999999987
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=4.3e-64 Score=450.86 Aligned_cols=233 Identities=60% Similarity=1.104 Sum_probs=216.5
Q ss_pred CcccccCceeeEeCCCeEEeCCCceEEEEeeCCCcceEEEceeeEeEEEEEEEEecCCCCCceEEEEEEeecC-CCCCce
Q 041460 26 DVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQG-DKHDEL 104 (262)
Q Consensus 26 ~~~~~~~~~~~w~~~nv~~~~~G~~L~Ltl~~~sga~i~S~~~f~YG~~EaR~K~p~g~~~G~~~Afwl~~~~-~~~~EI 104 (262)
..+|.++|.++|+++||++.++|+.|+|+|++.+|++|.|++.|+|||||||||+|+|+++|+||||||++++ |.++||
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~~~EI 82 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDNHDEI 82 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCCCCeE
Confidence 4579999999999999999888889999999999999999999999999999999998778999999999988 889999
Q ss_pred EEEEcCCCCCCCcEEEeeEeeCCcCCcceeEeccCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEEecccCCCCCCC-CC
Q 041460 105 DFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPS-KP 183 (262)
Q Consensus 105 DiE~lG~~~g~p~~~~tn~~~~g~~~~~~~~~l~~d~~~~fHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~~~~~P~-~P 183 (262)
|||++|+.+|+|+++|+|+|.++.+++++++.+++|++++||+|+|+|+|++|+|||||+++|++++.+..+.+||+ +|
T Consensus 83 D~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P 162 (263)
T cd02176 83 DFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQP 162 (263)
T ss_pred EEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccce
Confidence 99999998888999999999999888888899999999999999999999999999999999999987666788998 99
Q ss_pred cEEEEEeecCCCCCCCCCcccccCCCCceEEEEeEEEEeeccCCCCCCccccccCC--CcccccccccccCCHHHHHHhc
Q 041460 184 MQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCYS--SQYWWNSEKFWKLHSTQKAKYE 261 (262)
Q Consensus 184 m~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~~~~~~~v~~c~~~~~~~~~~~~c~~--~~~~~~~~~~~~l~~~~~~~~~ 261 (262)
|+|++|||+||+||++||++++||+++||+|.|++|+|.+|..++ . ...|.. ...||+++.+++|+.+|+++|+
T Consensus 163 m~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~--~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 238 (263)
T cd02176 163 MGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDP--G--DSFSSCSCTEDWWNGSTYQQLSANQQRAME 238 (263)
T ss_pred EEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCC--C--CccccCCCccccccccccccCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999873 2 234553 2679999999999999999998
Q ss_pred C
Q 041460 262 N 262 (262)
Q Consensus 262 ~ 262 (262)
|
T Consensus 239 ~ 239 (263)
T cd02176 239 W 239 (263)
T ss_pred H
Confidence 7
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=1.8e-45 Score=320.08 Aligned_cols=179 Identities=29% Similarity=0.555 Sum_probs=155.3
Q ss_pred CceeeEeCCCeEEeCCCceEEEEeeCC-CcceEEEceeeEeEEEEEEEEecCCCCCceEEEEEEeecCCCCCceEEEEcC
Q 041460 32 NYYITWGNDHVLSLNQGRAIQLSMDRS-SGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQGDKHDELDFEFLG 110 (262)
Q Consensus 32 ~~~~~w~~~nv~~~~~G~~L~Ltl~~~-sga~i~S~~~f~YG~~EaR~K~p~g~~~G~~~Afwl~~~~~~~~EIDiE~lG 110 (262)
.++.+..+++|..+. +.|.|+|++. ++++|.|+++|+|||||||||+|.+ +|+||||||++++ ++|||||++|
T Consensus 9 ~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~~--~gEIDIE~~G 82 (203)
T cd02183 9 SYDWTVTSGTVDYDD--DGASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSDD--LDEIDWEWVG 82 (203)
T ss_pred cCccEecCCcEeECC--CeEEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECCC--CCEEEEEecC
Confidence 355566789999853 3599999988 7899999999999999999999998 8999999999987 8999999999
Q ss_pred CCCCCCcEEEeeEeeCCcC---CcceeEeccCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEEeccc-CCCCCCCCCcEE
Q 041460 111 NREGKPITLQTNVFANGVG---NREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLES-IGVGYPSKPMQI 186 (262)
Q Consensus 111 ~~~g~p~~~~tn~~~~g~~---~~~~~~~l~~d~~~~fHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~-~~~~~P~~Pm~l 186 (262)
+ ++..+|+|++.++.. ++...+.+.++++++||+|+|||+|++|+|||||++++++++.+. .+..||.+||+|
T Consensus 83 ~---~~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~~P~~l 159 (203)
T cd02183 83 G---DLTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQTPMRL 159 (203)
T ss_pred C---CCCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCCCCcEE
Confidence 7 467899999976643 344556677788899999999999999999999999999986542 356799999999
Q ss_pred EEEeecCCC---------CCCCCCcccccCCCCceEEEEeEEEEee
Q 041460 187 EASLWNGES---------WATDGGRTKIDWTHAPFKAHFQGFDISG 223 (262)
Q Consensus 187 ~lnlw~gg~---------Wa~~GG~~~~d~~~~P~~~~~~~~~v~~ 223 (262)
+||+|.||+ |+ || ++||+.+|++|+||+|||..
T Consensus 160 ~ln~W~gg~~~~~~g~~~Wa--Gg--~~d~~~~P~~~~vd~v~v~~ 201 (203)
T cd02183 160 QIGIWAGGDPSNAPGTIEWA--GG--ETDYDKGPFTMYVKSVTVTD 201 (203)
T ss_pred EEEEecCCCccccCCcccCC--CC--ccCCCCCCEEEEEEEEEEEe
Confidence 999999985 99 88 79999999999999999964
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=8.1e-40 Score=285.82 Aligned_cols=176 Identities=31% Similarity=0.636 Sum_probs=149.3
Q ss_pred cCceeeEeCCCeEEeCCCceEEEEeeCC-------CcceEEEceeeEeEEEEEEEEecCCCCCceEEEEEEeecC---CC
Q 041460 31 QNYYITWGNDHVLSLNQGRAIQLSMDRS-------SGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQG---DK 100 (262)
Q Consensus 31 ~~~~~~w~~~nv~~~~~G~~L~Ltl~~~-------sga~i~S~~~f~YG~~EaR~K~p~g~~~G~~~Afwl~~~~---~~ 100 (262)
+...++|+++||.+. +| .|+|++.+. ++|+|.|+++|+||+||||||+|.+ +|+||||||++.. ..
T Consensus 23 ~~~~~~~~~~nv~v~-~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~ 98 (212)
T cd02175 23 GPFNCTWSADNVEFS-DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDP 98 (212)
T ss_pred CcEeeeEccccEEEE-CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCC
Confidence 445689999999995 44 799998654 3799999999999999999999987 8999999999742 45
Q ss_pred CCceEEEEcCCCCCCCcEEEeeEeeCCcCCcceeEeccCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEEecccCCCCCC
Q 041460 101 HDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYP 180 (262)
Q Consensus 101 ~~EIDiE~lG~~~g~p~~~~tn~~~~g~~~~~~~~~l~~d~~~~fHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~~~~~P 180 (262)
++|||||++|++ +..+++|+|.++.++....+.+.++++++||+|+|+|+|++|+|||||+++++++..+ ..+|
T Consensus 99 ~~EIDiE~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p 172 (212)
T cd02175 99 HDEIDIEFLGKD---TTKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIP 172 (212)
T ss_pred CCEEEEEEccCC---CCEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCC
Confidence 799999999974 4568889888766555556667788889999999999999999999999999987642 3689
Q ss_pred CCCcEEEEEeecCC---CCCCCCCcccccCCCCceEEEEeEEEEe
Q 041460 181 SKPMQIEASLWNGE---SWATDGGRTKIDWTHAPFKAHFQGFDIS 222 (262)
Q Consensus 181 ~~Pm~l~lnlw~gg---~Wa~~GG~~~~d~~~~P~~~~~~~~~v~ 222 (262)
.+||+|+||+|.++ +|+ | ++|. ..|+.|+||||||+
T Consensus 173 ~~p~~i~~n~w~~~~~~~W~---G--~~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 173 DTPGKIMMNLWPGDGVDDWL---G--PFDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred CCCcEEEEEEEcCCCCCCcC---C--cCCC-CCCeEEEEEEEEEe
Confidence 99999999999985 598 4 5676 88999999999986
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=1.5e-36 Score=257.98 Aligned_cols=174 Identities=37% Similarity=0.690 Sum_probs=147.3
Q ss_pred ccCceeeEeCCCeEEeCCCceEEEEeeC-----CCcceEEEceeeEeEEEEEEEEecCCCCCceEEEEEEeecC--CCCC
Q 041460 30 DQNYYITWGNDHVLSLNQGRAIQLSMDR-----SSGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQG--DKHD 102 (262)
Q Consensus 30 ~~~~~~~w~~~nv~~~~~G~~L~Ltl~~-----~sga~i~S~~~f~YG~~EaR~K~p~g~~~G~~~Afwl~~~~--~~~~ 102 (262)
.+.++|+|+++||.+.+ |+.|+|++++ .++|+|+|+..++|||||||||++.+ +|+++||||.+.+ +.++
T Consensus 2 ~~~~~~~~~~~nv~~~~-g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~~~ 78 (185)
T PF00722_consen 2 GDQYNCTWSPDNVTVED-GGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPDGG 78 (185)
T ss_dssp CCTEEEEETCCGEEEET-TSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTTTE
T ss_pred CCceEEeeCCCcEEEcC-CCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccchh
Confidence 36799999999999954 4589999987 46899999999999999999998877 8999999997532 6799
Q ss_pred ceEEEEcCCCCCCCcEEEeeEeeCCcCCc--ceeEeccCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEEecccCCCCCC
Q 041460 103 ELDFEFLGNREGKPITLQTNVFANGVGNR--EQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYP 180 (262)
Q Consensus 103 EIDiE~lG~~~g~p~~~~tn~~~~g~~~~--~~~~~l~~d~~~~fHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~~~~~P 180 (262)
|||||++|++ +..+++++|..+.+.. ...+.+..++.++||+|+|+|+|++|+|||||+++++++.....+.++|
T Consensus 79 EIDiE~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P 155 (185)
T PF00722_consen 79 EIDIEFLGND---PTQVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYP 155 (185)
T ss_dssp EEEEEEETTS---TTEEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSS
T ss_pred hhhhhhcccc---ccceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCc
Confidence 9999999985 3469999998877654 4456667788999999999999999999999999999987654334689
Q ss_pred C-CCcEEEEEeecCCCCCCCCCcccccCCCCceEEEEeEEE
Q 041460 181 S-KPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFD 220 (262)
Q Consensus 181 ~-~Pm~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~~~~~~~ 220 (262)
. .||+|.+++|.+++|++..| .|+|||||
T Consensus 156 ~~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 156 FSTPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred ccceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 9 99999999999988873222 79999987
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=4.4e-35 Score=253.41 Aligned_cols=172 Identities=37% Similarity=0.619 Sum_probs=142.7
Q ss_pred eeeEeCCCeEEeCCCceEEEEeeCC------CcceEEE-ceeeEeEEEEEEEEecCCCCCceEEEEEEeecC---CCCCc
Q 041460 34 YITWGNDHVLSLNQGRAIQLSMDRS------SGSGFGS-KLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQG---DKHDE 103 (262)
Q Consensus 34 ~~~w~~~nv~~~~~G~~L~Ltl~~~------sga~i~S-~~~f~YG~~EaR~K~p~g~~~G~~~Afwl~~~~---~~~~E 103 (262)
.+.|+++||.+.++| .|+|++.+. ++|+|.| ++.|+||+||+|||++.+ .|+|+||||++++ +..+|
T Consensus 24 ~~~~~~~nv~~~~~G-~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~E 100 (210)
T cd00413 24 NMTNSPNNVYVENDG-GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGE 100 (210)
T ss_pred eEEECccCEEEeCCC-eEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCe
Confidence 578899999996535 799998654 4699999 999999999999999987 8999999999976 57999
Q ss_pred eEEEEcCCCCCCCcEEEeeEeeCCcC-----CcceeEeccCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEEecccCCCC
Q 041460 104 LDFEFLGNREGKPITLQTNVFANGVG-----NREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVG 178 (262)
Q Consensus 104 IDiE~lG~~~g~p~~~~tn~~~~g~~-----~~~~~~~l~~d~~~~fHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~~~~ 178 (262)
||||+++++ +..+++++|..+.+ .....+.+.++..++||+|+|+|+|++|+|||||+++++++. .
T Consensus 101 IDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~------~ 171 (210)
T cd00413 101 IDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITN------Q 171 (210)
T ss_pred EEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECC------C
Confidence 999999974 45688888876543 122234445557899999999999999999999999999864 2
Q ss_pred CCCCCcEEEEEeecCCCCCCCCCcccccCCCCceEEEEeEEEEe
Q 041460 179 YPSKPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDIS 222 (262)
Q Consensus 179 ~P~~Pm~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~~~~~~~v~ 222 (262)
+|.+||+|+||+|.+++|+ +. .+....|..|+||||||+
T Consensus 172 ~p~~p~~i~ln~~~~~~~~--~~---~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 172 VPDDPMNIILNLWSDGGWW--WG---GPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred CCCCCcEEEEEEEECCCCc--cc---CCCCCCCcEEEEEEEEEC
Confidence 7899999999999999987 32 345678999999999984
No 7
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=1.2e-34 Score=260.31 Aligned_cols=181 Identities=22% Similarity=0.296 Sum_probs=134.7
Q ss_pred eeEeCCCeEEeCCCceEEEEeeCC-----------CcceEEEceeeEeEEEEEEEEecCCCCCceEEEEEEeecC-CCCC
Q 041460 35 ITWGNDHVLSLNQGRAIQLSMDRS-----------SGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQG-DKHD 102 (262)
Q Consensus 35 ~~w~~~nv~~~~~G~~L~Ltl~~~-----------sga~i~S~~~f~YG~~EaR~K~p~g~~~G~~~Afwl~~~~-~~~~ 102 (262)
..+.++||.+. +| .|.|++.+. ++|+|.|++.|+|||||||||+|.+ + .+|||||++.+ +.++
T Consensus 53 ~~y~~~nv~v~-~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~--~-~~pAfW~~~~~~~~~g 127 (258)
T cd02178 53 TEFSADNVSVE-DG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL--P-MSSAFWLLSDTKDSTT 127 (258)
T ss_pred ceEccCCeEEE-CC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC--C-ccceEEEccCCCCCCC
Confidence 34557888883 45 799998654 2589999999999999999999976 4 58999999874 6799
Q ss_pred ceE-EEEcCCCC--CCCcEEEeeEeeCCcC-----Cc---ceeEeccCCCCCCcEEEEEEEc-CCeEEEEECCeeEEEEE
Q 041460 103 ELD-FEFLGNRE--GKPITLQTNVFANGVG-----NR---EQRMHLWFDPTADFHTYKILWN-PHQIVFYVDDVPIRVFK 170 (262)
Q Consensus 103 EID-iE~lG~~~--g~p~~~~tn~~~~g~~-----~~---~~~~~l~~d~~~~fHtY~i~Wt-pd~I~fyVDG~~vr~~~ 170 (262)
||| ||++|.+. ..+..+++++|....+ .+ ...+....+.+++||+|+++|+ |++|+|||||+++++++
T Consensus 128 EIDI~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~ 207 (258)
T cd02178 128 EIDILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVE 207 (258)
T ss_pred cEEhhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEc
Confidence 999 59999753 1245688887643221 11 1223344556889999999999 99999999999999998
Q ss_pred ecccCCCCCCC-CCcEEEEEeecCCCCCCCCCcccccCCCCceEEEEeEEEEee
Q 041460 171 NLESIGVGYPS-KPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDISG 223 (262)
Q Consensus 171 ~~~~~~~~~P~-~Pm~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~~~~~~~v~~ 223 (262)
+.+.. ...|. +||+|+||+++|| |++..+. ...-...|..|+||||||++
T Consensus 208 ~~~~~-~~~~f~~p~~liln~avg~-w~g~~~~-~~~~~~~p~~m~VDYVRvyq 258 (258)
T cd02178 208 NSEIT-DGTGFDQPMYIIIDTETYD-WRGEPTD-EELADDSKNTFYVDYVRVYK 258 (258)
T ss_pred CcccC-cCCcCCCCeEEEEEecccc-CCCCCCc-cccCCCCCCeEEEEEEEEeC
Confidence 64332 23454 9999999999988 9831121 12233569999999999973
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=5.6e-34 Score=251.74 Aligned_cols=178 Identities=24% Similarity=0.436 Sum_probs=140.1
Q ss_pred eeeEeCCCeEEeCCCceEEEEeeCC----------CcceEEE--ceeeEeEEEEEEEEecCCCCCceEEEEEEeecC---
Q 041460 34 YITWGNDHVLSLNQGRAIQLSMDRS----------SGSGFGS--KLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQG--- 98 (262)
Q Consensus 34 ~~~w~~~nv~~~~~G~~L~Ltl~~~----------sga~i~S--~~~f~YG~~EaR~K~p~g~~~G~~~Afwl~~~~--- 98 (262)
.+.+.++||.+. +| .|.|+..+. .+|+|.| ++.|+|||||||||+|.+ +|++|||||++++
T Consensus 32 ~~~~~~~nv~v~-~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~ 107 (235)
T cd08023 32 YYTYRPENAYVE-DG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKY 107 (235)
T ss_pred EEeCCCCCeEEE-CC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCC
Confidence 456788999884 44 788887543 2589999 888999999999999987 8999999999864
Q ss_pred ---CCCCceEE-EEcCCCCCCCcEEEeeEeeCCcC----CcceeEeccC-CCCCCcEEEEEEEcCCeEEEEECCeeEEEE
Q 041460 99 ---DKHDELDF-EFLGNREGKPITLQTNVFANGVG----NREQRMHLWF-DPTADFHTYKILWNPHQIVFYVDDVPIRVF 169 (262)
Q Consensus 99 ---~~~~EIDi-E~lG~~~g~p~~~~tn~~~~g~~----~~~~~~~l~~-d~~~~fHtY~i~Wtpd~I~fyVDG~~vr~~ 169 (262)
+..+|||| |++|+. +..+++++|..+.. .....+.+.. +..++||+|+++|+|++|+|||||++++++
T Consensus 108 ~~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~ 184 (235)
T cd08023 108 VGWPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTY 184 (235)
T ss_pred CCCCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEE
Confidence 45789995 999985 45788888876643 1223344443 678999999999999999999999999999
Q ss_pred EecccCC-CCCC-CCCcEEEEEeecCCCCCCCCCcccccCCCCceEEEEeEEEEe
Q 041460 170 KNLESIG-VGYP-SKPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDIS 222 (262)
Q Consensus 170 ~~~~~~~-~~~P-~~Pm~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~~~~~~~v~ 222 (262)
++..... ..+| .+||+|+||++++|+|+ |- .......|..|.||||||+
T Consensus 185 ~~~~~~~~~~~~~~~p~~liln~~~gg~w~--g~--~~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 185 TNPNTDNGGQWPFDQPFYLILNLAVGGNWP--GP--PDDDTPFPATMEVDYVRVY 235 (235)
T ss_pred cccccCCcccCCCCCCcEEEEEEEEcCCCC--CC--CCCCCCCCCEEEEEEEEEC
Confidence 8653211 1234 59999999999999998 31 1345577999999999985
No 9
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=3.8e-32 Score=248.19 Aligned_cols=184 Identities=22% Similarity=0.272 Sum_probs=128.1
Q ss_pred eeeEeCCCeEEeCCCceEEEEeeCC-------CcceEEE--ceeeEeEEEEEEEEecCC-CCCceEEEEEEeecC-----
Q 041460 34 YITWGNDHVLSLNQGRAIQLSMDRS-------SGSGFGS--KLHYGSGFFHLKMKLPDK-DSAGIVTAFYLTSQG----- 98 (262)
Q Consensus 34 ~~~w~~~nv~~~~~G~~L~Ltl~~~-------sga~i~S--~~~f~YG~~EaR~K~p~g-~~~G~~~Afwl~~~~----- 98 (262)
...+.++||++ .+| .|.|+..+. ++|+|.| |+.|+|||||||||+|.+ ...|+||||||+++.
T Consensus 35 ~q~Y~~~nv~v-~~G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~ 112 (295)
T cd02180 35 LEWYDPDAVTT-ING-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGY 112 (295)
T ss_pred eEEecCcCeEe-cCC-eEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeecccccccccc
Confidence 34667889988 345 799988653 4689999 677899999999999963 237999999999852
Q ss_pred --------CC------CCceE-EEEcCCCC-CCCcE---EE----------------eeEeeC------Cc-CCcc-eeE
Q 041460 99 --------DK------HDELD-FEFLGNRE-GKPIT---LQ----------------TNVFAN------GV-GNRE-QRM 135 (262)
Q Consensus 99 --------~~------~~EID-iE~lG~~~-g~p~~---~~----------------tn~~~~------g~-~~~~-~~~ 135 (262)
|. .+||| ||.+|.+. ..... +| ..+|.. .. +... +..
T Consensus 113 ~~~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 192 (295)
T cd02180 113 LATTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAI 192 (295)
T ss_pred cccccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCcccccc
Confidence 32 48999 69998532 01111 11 111110 00 0000 000
Q ss_pred ----eccC----CCCCCcEEEEEEEcC-----CeEEEEECCeeEEEEEecccC------CCCCCCCCcEEEEEeecCCCC
Q 041460 136 ----HLWF----DPTADFHTYKILWNP-----HQIVFYVDDVPIRVFKNLESI------GVGYPSKPMQIEASLWNGESW 196 (262)
Q Consensus 136 ----~l~~----d~~~~fHtY~i~Wtp-----d~I~fyVDG~~vr~~~~~~~~------~~~~P~~Pm~l~lnlw~gg~W 196 (262)
.+.. ...++||+|+|||+| ++|+|||||+++++++..... ...+|.+||+|+||+++||+|
T Consensus 193 ~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~~~P~ylILNlAvGg~w 272 (295)
T cd02180 193 SCVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIPEEPMYIILNLGISSNF 272 (295)
T ss_pred ccccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccCCCCeEEEEEEEecccc
Confidence 1111 126789999999999 899999999999999864311 124678999999999999999
Q ss_pred CCCCCcccccCCCCceEEEEeEEEEee
Q 041460 197 ATDGGRTKIDWTHAPFKAHFQGFDISG 223 (262)
Q Consensus 197 a~~GG~~~~d~~~~P~~~~~~~~~v~~ 223 (262)
+ |- +.+-...|..|+||||||++
T Consensus 273 ~--g~--~~~~~~~P~~m~VDyVRVYQ 295 (295)
T cd02180 273 Q--DI--DWDELQFPATMRIDYVRVYQ 295 (295)
T ss_pred C--CC--CcccCCCCCEEEEEEEEEEC
Confidence 7 32 34455679999999999974
No 10
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=100.00 E-value=3.3e-31 Score=239.33 Aligned_cols=171 Identities=27% Similarity=0.382 Sum_probs=125.9
Q ss_pred CCCeEEeCCCceEEEEeeCC-------------------CcceEEEceeeEeEEEEEEEEecC-CCCCceEEEEEEeec-
Q 041460 39 NDHVLSLNQGRAIQLSMDRS-------------------SGSGFGSKLHYGSGFFHLKMKLPD-KDSAGIVTAFYLTSQ- 97 (262)
Q Consensus 39 ~~nv~~~~~G~~L~Ltl~~~-------------------sga~i~S~~~f~YG~~EaR~K~p~-g~~~G~~~Afwl~~~- 97 (262)
++||.+ .+| .|.|+..+. ++|+|.|+++|+|||||||||+++ + +|+||||||+++
T Consensus 43 ~~Nv~v-~dG-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVI-SNG-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDI 118 (269)
T ss_pred ccceEE-eCC-EEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccC
Confidence 568877 455 799988543 458899999999999999999865 5 899999999985
Q ss_pred -------C-CCCCceEE-EEcCCC---CCCCc----EEEeeEeeCCcCC--c--------ceeEeccCCCCCCcEEEEEE
Q 041460 98 -------G-DKHDELDF-EFLGNR---EGKPI----TLQTNVFANGVGN--R--------EQRMHLWFDPTADFHTYKIL 151 (262)
Q Consensus 98 -------~-~~~~EIDi-E~lG~~---~g~p~----~~~tn~~~~g~~~--~--------~~~~~l~~d~~~~fHtY~i~ 151 (262)
+ |.++|||| |.+|.+ .+++. .+|+.++.++.+. + ...+.+++|++++||+|+|+
T Consensus 119 ~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~ 198 (269)
T cd02177 119 DYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCN 198 (269)
T ss_pred CCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEE
Confidence 1 57899995 887753 12233 3444444443321 1 11244567888999999999
Q ss_pred EcCCeEEEEECCeeEEEEEecccCCCCCCCCCcEEEEEeecCC---------CCCCCCCcccccCCCCceEEEEeEEEEe
Q 041460 152 WNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGE---------SWATDGGRTKIDWTHAPFKAHFQGFDIS 222 (262)
Q Consensus 152 Wtpd~I~fyVDG~~vr~~~~~~~~~~~~P~~Pm~l~lnlw~gg---------~Wa~~GG~~~~d~~~~P~~~~~~~~~v~ 222 (262)
|+|++|+|||||++++++.+ .+...||++.+++-... .|+ |+ ..+.+..|..|+||||||+
T Consensus 199 W~~~~i~~yvDg~~~~~~~~------~~w~~~~~~~~~~~~~~p~~~~~~~~~~~--~~--~~~~~~fP~~m~VDyVRv~ 268 (269)
T cd02177 199 VNQDEIIWYVDGVEVGRKPN------KYWHRPMNVTLSLGLRKPFVKFFDNKNNA--KA--REKASDFPTSMYVDYVRVW 268 (269)
T ss_pred EeCCEEEEEECCEEEEEEcC------CccccccEEeeccccCcchhhhhccccCC--CC--CCccCcCCceEEEEEEEEe
Confidence 99999999999999999864 34568888888875432 255 44 4456778999999999996
Q ss_pred e
Q 041460 223 G 223 (262)
Q Consensus 223 ~ 223 (262)
.
T Consensus 269 ~ 269 (269)
T cd02177 269 E 269 (269)
T ss_pred C
Confidence 3
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.97 E-value=7.2e-31 Score=236.02 Aligned_cols=181 Identities=17% Similarity=0.171 Sum_probs=126.0
Q ss_pred eEeCCCeEEeCCCceEEEEeeCC-----CcceEEEceee--Ee----EEEEEEEEecCCC---CCceEEEEEEeecC---
Q 041460 36 TWGNDHVLSLNQGRAIQLSMDRS-----SGSGFGSKLHY--GS----GFFHLKMKLPDKD---SAGIVTAFYLTSQG--- 98 (262)
Q Consensus 36 ~w~~~nv~~~~~G~~L~Ltl~~~-----sga~i~S~~~f--~Y----G~~EaR~K~p~g~---~~G~~~Afwl~~~~--- 98 (262)
+.+++||.+..+| .|.|+..+. ++|+|.|+.++ .| ||||||||+|.+. ..|+||||||++.+
T Consensus 42 ~~~~~n~~v~~dG-~L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNG-TLQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCC-eEEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 4567899885355 799988654 35889997665 33 4999999999741 37999999999862
Q ss_pred -----CCCCceE-EEEcCCCCCCCcEEEeeEeeCC-c--CCccee-Ee-ccCCCCCCcEEEEEEEcC-----CeEEEEEC
Q 041460 99 -----DKHDELD-FEFLGNREGKPITLQTNVFANG-V--GNREQR-MH-LWFDPTADFHTYKILWNP-----HQIVFYVD 162 (262)
Q Consensus 99 -----~~~~EID-iE~lG~~~g~p~~~~tn~~~~g-~--~~~~~~-~~-l~~d~~~~fHtY~i~Wtp-----d~I~fyVD 162 (262)
|..+||| ||..|.. +...++ +|... . ...+.. .. ......++||+|++||+| ++|+||||
T Consensus 121 ~~~~WP~~GEIDImE~~~~~---~~~~~t-~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvD 196 (259)
T cd02182 121 NGTNWPACGELDIMENVNGL---STGYGT-LHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLD 196 (259)
T ss_pred CCCCCCccceeeeeeccCCC---CceEEE-EeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEEC
Confidence 5678999 5999853 344444 44322 1 111111 10 011235899999999997 99999999
Q ss_pred CeeEEEEEecccC---CC-CCCCCCcEEEEEeecCCCCCCCCCcccccCCCCceEEEEeEEEEee
Q 041460 163 DVPIRVFKNLESI---GV-GYPSKPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDISG 223 (262)
Q Consensus 163 G~~vr~~~~~~~~---~~-~~P~~Pm~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~~~~~~~v~~ 223 (262)
|+++++++..... .. ..|.+||+||||+++||+|+ |......-...|..|+||||||++
T Consensus 197 G~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~--~~~~~~~~~~~p~~m~VDyVRVyq 259 (259)
T cd02182 197 GVVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP--GAPNGNTATGSGSAMEVDYVAVYS 259 (259)
T ss_pred CEEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC--CCCCcccccCCCceEEEEEEEEeC
Confidence 9999999764221 11 24569999999999999998 321011123469999999999974
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.97 E-value=3.1e-29 Score=232.77 Aligned_cols=136 Identities=21% Similarity=0.289 Sum_probs=101.3
Q ss_pred cceEEE--ceeeEeEEEEEEEEecCCCCCceEEEEEEeecC------CCCCceE-EEEcCCCCCCC-------cEEEeeE
Q 041460 60 GSGFGS--KLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQG------DKHDELD-FEFLGNREGKP-------ITLQTNV 123 (262)
Q Consensus 60 ga~i~S--~~~f~YG~~EaR~K~p~g~~~G~~~Afwl~~~~------~~~~EID-iE~lG~~~g~p-------~~~~tn~ 123 (262)
.|+|.| ++.|+|||||||||+|.| +|+||||||++.+ |..+||| ||..|+....+ ..++.++
T Consensus 101 Sgri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tl 178 (330)
T cd08024 101 SARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGSTL 178 (330)
T ss_pred EEEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEEE
Confidence 578888 577899999999999998 7999999999864 6789999 69999753211 2355555
Q ss_pred eeCCcCC----cce--eE-eccCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEEecc-------------------cCCC
Q 041460 124 FANGVGN----REQ--RM-HLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLE-------------------SIGV 177 (262)
Q Consensus 124 ~~~g~~~----~~~--~~-~l~~d~~~~fHtY~i~Wtpd~I~fyVDG~~vr~~~~~~-------------------~~~~ 177 (262)
|...... +.. .. ....+.+++||+|+++|+|++|+|||||+++++++... ....
T Consensus 179 H~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~ 258 (330)
T cd08024 179 HWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGK 258 (330)
T ss_pred EeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCc
Confidence 5432211 111 11 11234578899999999999999999999999998521 0123
Q ss_pred CCCC-CCcEEEEEeecCCCCC
Q 041460 178 GYPS-KPMQIEASLWNGESWA 197 (262)
Q Consensus 178 ~~P~-~Pm~l~lnlw~gg~Wa 197 (262)
..|+ +|+||+|||++||.|.
T Consensus 259 ~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 259 MAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CCCCCCCEEEEEEEEecCCCC
Confidence 4677 9999999999999875
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=3.8e-28 Score=224.61 Aligned_cols=133 Identities=19% Similarity=0.194 Sum_probs=95.1
Q ss_pred cceEEEc--eeeEeEEEEEEEEecCCCCCceEEEEEEeecC-------CCCCceE-EEEcCCCCCC---CcEEEeeEeeC
Q 041460 60 GSGFGSK--LHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQG-------DKHDELD-FEFLGNREGK---PITLQTNVFAN 126 (262)
Q Consensus 60 ga~i~S~--~~f~YG~~EaR~K~p~g~~~G~~~Afwl~~~~-------~~~~EID-iE~lG~~~g~---p~~~~tn~~~~ 126 (262)
.|+|.|+ +.|+|||||||||||.| .|+||||||++.+ |.++||| ||.+|+.... ..+..+.+|..
T Consensus 98 Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g 175 (321)
T cd02179 98 SARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYGG 175 (321)
T ss_pred eeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEcc
Confidence 4888885 67899999999999999 7999999999864 4679999 5999985210 01111222221
Q ss_pred Cc----C-Ccce---eEeccCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEEeccc----------------CCCCCCC-
Q 041460 127 GV----G-NREQ---RMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLES----------------IGVGYPS- 181 (262)
Q Consensus 127 g~----~-~~~~---~~~l~~d~~~~fHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~----------------~~~~~P~- 181 (262)
.. . .+.. ......+.+++||+|+++|+|++|+|||||+++++++.... .....|+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD 255 (321)
T cd02179 176 PVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFD 255 (321)
T ss_pred cccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCC
Confidence 11 0 0100 01112345789999999999999999999999999985321 1124577
Q ss_pred CCcEEEEEeecCC
Q 041460 182 KPMQIEASLWNGE 194 (262)
Q Consensus 182 ~Pm~l~lnlw~gg 194 (262)
+|+||+|||++||
T Consensus 256 ~~FyliLNlAVGG 268 (321)
T cd02179 256 KEFYLSLGVGVGG 268 (321)
T ss_pred CCeEEEEEEEecC
Confidence 9999999999998
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=7e-27 Score=218.16 Aligned_cols=179 Identities=24% Similarity=0.409 Sum_probs=142.8
Q ss_pred cCceeeEeCCCeEEeCCCceEEEEeeCC-------CcceEEEcee--eEeEEEEEEEEecCCCCCceEEEEEEeec----
Q 041460 31 QNYYITWGNDHVLSLNQGRAIQLSMDRS-------SGSGFGSKLH--YGSGFFHLKMKLPDKDSAGIVTAFYLTSQ---- 97 (262)
Q Consensus 31 ~~~~~~w~~~nv~~~~~G~~L~Ltl~~~-------sga~i~S~~~--f~YG~~EaR~K~p~g~~~G~~~Afwl~~~---- 97 (262)
...+++|..+++.+..+| .|.|.+++. ++++|+|..+ |+||++|+|||+|.+ +|+||||||++.
T Consensus 70 ~~~~~~w~~~~~~lt~~~-~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~d 146 (355)
T COG2273 70 ATKNLTWYVSNVVLTIGG-TLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRD 146 (355)
T ss_pred cccccceeecceeEeeCC-eeeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccC
Confidence 345578999999887555 788887653 5799999877 899999999999976 899999999985
Q ss_pred CCCCCceEEEEcCCCCCCCcEEEeeEeeCCcCCcceeEeccC-CCCCCcEEEEEEEcCCeEEEEECCeeEEEEEecccCC
Q 041460 98 GDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWF-DPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIG 176 (262)
Q Consensus 98 ~~~~~EIDiE~lG~~~g~p~~~~tn~~~~g~~~~~~~~~l~~-d~~~~fHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~~ 176 (262)
+..++|||+|++|+++. +..+|+|++.++.++.+....+.. +..++||+|+++|.+++|+|||||++++++...
T Consensus 147 g~wp~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p---- 221 (355)
T COG2273 147 GGWPDEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP---- 221 (355)
T ss_pred CCCCcceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----
Confidence 35679999999997643 456999999988877666555566 778999999999999999999999999998753
Q ss_pred CCCCCCCcEEEEEeecCCCCCCCCCcccccCCCCceEEEEeEEEE
Q 041460 177 VGYPSKPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDI 221 (262)
Q Consensus 177 ~~~P~~Pm~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~~~~~~~v 221 (262)
..+|+.||++++|+|.++.+.+.-| .+...+-.+.++++++
T Consensus 222 ~~~~~~p~y~~~nl~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 262 (355)
T COG2273 222 DYIPQIPFYVLVNLWMGGYAGGPPG----EALSAGSPLNIDYYRV 262 (355)
T ss_pred ccCcCCcceeEEeecccCccCCCcc----ccccCCcceEeeeeee
Confidence 3469999999999999987653222 2333344556666665
No 15
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.74 E-value=2.4e-17 Score=158.54 Aligned_cols=77 Identities=23% Similarity=0.354 Sum_probs=64.9
Q ss_pred CCCcEEEEEEEcCC-----eEEEEECCeeEEEEEeccc------CCCCCCCCCcEEEEEeecCCCCCCCCCcccccCCC-
Q 041460 142 TADFHTYKILWNPH-----QIVFYVDDVPIRVFKNLES------IGVGYPSKPMQIEASLWNGESWATDGGRTKIDWTH- 209 (262)
Q Consensus 142 ~~~fHtY~i~Wtpd-----~I~fyVDG~~vr~~~~~~~------~~~~~P~~Pm~l~lnlw~gg~Wa~~GG~~~~d~~~- 209 (262)
..+||+|++||.|. .|+|+|||+++.++..... ....+|..||+|+|||....+|. .+||.+
T Consensus 365 ~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~a~Al~~~~~I~~R~Ip~EPMyIIlNlgmS~sf~------~vd~~~L 438 (504)
T PF03935_consen 365 GGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTINAEALGPNPNIGQRPIPEEPMYIILNLGMSSSFG------YVDWNHL 438 (504)
T ss_pred CCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEEhhhcCCCCCcCccccCcCCceeeeccccccccC------ccccccc
Confidence 37899999999874 8999999999999985432 12578999999999999999996 678865
Q ss_pred -CceEEEEeEEEEeec
Q 041460 210 -APFKAHFQGFDISGC 224 (262)
Q Consensus 210 -~P~~~~~~~~~v~~c 224 (262)
.|.+|.||||||++=
T Consensus 439 ~FP~~M~IDYVRVYQ~ 454 (504)
T PF03935_consen 439 CFPATMRIDYVRVYQP 454 (504)
T ss_pred cccceEEEeEEEEecc
Confidence 588999999999754
No 16
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.50 E-value=2.5e-13 Score=123.57 Aligned_cols=141 Identities=19% Similarity=0.293 Sum_probs=94.1
Q ss_pred ceEEEEeeCC---------CcceEEEceeeEeEEEEEEE-EecCCCCCceEEEEEEeecC-CCCCceE-EEEcCCCCCCC
Q 041460 49 RAIQLSMDRS---------SGSGFGSKLHYGSGFFHLKM-KLPDKDSAGIVTAFYLTSQG-DKHDELD-FEFLGNREGKP 116 (262)
Q Consensus 49 ~~L~Ltl~~~---------sga~i~S~~~f~YG~~EaR~-K~p~g~~~G~~~Afwl~~~~-~~~~EID-iE~lG~~~g~p 116 (262)
+.|.|.+++. +.++|.|+++|.||++|+|+ |+|.+ .|+||||||++.+ |..+||| ||.++...
T Consensus 49 g~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~~WP~~GEIDImE~vn~~~--- 123 (293)
T cd02181 49 GNVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGPNWPNGGEIDIIEGVNLQT--- 123 (293)
T ss_pred CeEEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCCCCCCCCcEEEEeccCCCC---
Confidence 3688888653 24889999999999999997 99987 8999999999876 8899999 69997532
Q ss_pred cEEEeeEeeCCcC-----------------------CcceeEe--------ccCCCCCCcEEEEEEEcCCeEEEEECC--
Q 041460 117 ITLQTNVFANGVG-----------------------NREQRMH--------LWFDPTADFHTYKILWNPHQIVFYVDD-- 163 (262)
Q Consensus 117 ~~~~tn~~~~g~~-----------------------~~~~~~~--------l~~d~~~~fHtY~i~Wtpd~I~fyVDG-- 163 (262)
..+..+|+.+.. +....+. ..|+ ..+=-+|++||+++.|+.+.--
T Consensus 124 -~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWff~R~ 201 (293)
T cd02181 124 -SNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWFFPRG 201 (293)
T ss_pred -ceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcEEEEEecCC
Confidence 233334432110 0111111 1121 3445699999999999866532
Q ss_pred -eeEEEEEeccc-------CCCCCCC---------CCcEEEEEeecCCCCC
Q 041460 164 -VPIRVFKNLES-------IGVGYPS---------KPMQIEASLWNGESWA 197 (262)
Q Consensus 164 -~~vr~~~~~~~-------~~~~~P~---------~Pm~l~lnlw~gg~Wa 197 (262)
++- .++.... +-..||. ++++|++|+-.=|+||
T Consensus 202 ~iP~-di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 202 SIPA-DITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred CCCc-ccccCCCCCcccCcccccCCCCCCChhHhcccCEEEEEeecccccc
Confidence 221 1211111 1123443 8999999999999999
No 17
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=95.00 E-value=0.73 Score=36.11 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=40.7
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeeEEEEEecccCCCCCCCCCcEEEEEeecCCCCCCCCCcccccCCCCceEEEEeEEEE
Q 041460 142 TADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDI 221 (262)
Q Consensus 142 ~~~fHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~~~~~P~~Pm~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~~~~~~~v 221 (262)
.+.||..++-|....+++||||+++.+...... ... .....+. .|+.. ....+|...++.+||
T Consensus 84 ~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~--~~~-~~~~~~~----iG~~~----------~~~~~~~g~i~~~~i 146 (157)
T PF13385_consen 84 DNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN--ISL-NSNGPLF----IGGSG----------GGSSPFNGYIDDLRI 146 (157)
T ss_dssp TT-EEEEEEEEETTEEEEEETTEEETTCTEESS--SST-TSCCEEE----ESS-S----------TT--B-EEEEEEEEE
T ss_pred CCCEEEEEEEEECCeEEEEECCEEEEeEeccCC--cCC-CCcceEE----EeecC----------CCCCceEEEEEEEEE
Confidence 588999999999999999999999866432211 000 1111222 22221 225689999999999
Q ss_pred eeccCC
Q 041460 222 SGCPAD 227 (262)
Q Consensus 222 ~~c~~~ 227 (262)
+.++-+
T Consensus 147 ~~~aLt 152 (157)
T PF13385_consen 147 YNRALT 152 (157)
T ss_dssp ESS---
T ss_pred ECccCC
Confidence 876553
No 18
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=94.14 E-value=0.026 Score=38.53 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=18.6
Q ss_pred cC-CCcccccccccccCCHHHHHHhcC
Q 041460 237 CY-SSQYWWNSEKFWKLHSTQKAKYEN 262 (262)
Q Consensus 237 c~-~~~~~~~~~~~~~l~~~~~~~~~~ 262 (262)
|+ +..+||+++.++ |+.+|+++|+|
T Consensus 1 C~~~~~~w~~~~~~~-L~~~q~~~m~w 26 (51)
T PF06955_consen 1 CSSSSKSWWNQPYAQ-LSAKQRRQMRW 26 (51)
T ss_dssp -TTTTTSGGCSCCCS---HHHHHHHHH
T ss_pred CcCCCcccccCcccC-CCHHHHHHHHH
Confidence 53 356899998888 99999999987
No 19
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=90.52 E-value=9.6 Score=33.05 Aligned_cols=135 Identities=13% Similarity=0.250 Sum_probs=66.2
Q ss_pred eeEeEEEEEEEEecCCCCCceEEEEEEeecC-C---------CCCceEEEEcCCCCCCCcEEEeeEeeCCcCCcceeEec
Q 041460 68 HYGSGFFHLKMKLPDKDSAGIVTAFYLTSQG-D---------KHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHL 137 (262)
Q Consensus 68 ~f~YG~~EaR~K~p~g~~~G~~~Afwl~~~~-~---------~~~EIDiE~lG~~~g~p~~~~tn~~~~g~~~~~~~~~l 137 (262)
...-|.+-+|.|.... . -+-|++-.+++ . ..++|=+|+.+......+...+..-..+
T Consensus 31 ~L~~gTI~i~Fk~~~~--~-~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~---------- 97 (190)
T PF02973_consen 31 KLEEGTIVIRFKSDSN--S-GIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRG---------- 97 (190)
T ss_dssp T-SSEEEEEEEEESS---S-SEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--S----------
T ss_pred cccccEEEEEEecCCC--c-ceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEecc----------
Confidence 3456777888886443 3 44567777654 1 1226667777654322111111100000
Q ss_pred cCCCCCCcEEEEEEEc--CCeEEEEECCeeEEEEEecccC-CCCCCCCCcEEEEEeecCCCCCCCCCcccccCCCCceEE
Q 041460 138 WFDPTADFHTYKILWN--PHQIVFYVDDVPIRVFKNLESI-GVGYPSKPMQIEASLWNGESWATDGGRTKIDWTHAPFKA 214 (262)
Q Consensus 138 ~~d~~~~fHtY~i~Wt--pd~I~fyVDG~~vr~~~~~~~~-~~~~P~~Pm~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~ 214 (262)
..-....||+-++.=. ..+.++|+||+++.++...... -...|. +=.+.| |+. .++| .. ..||.-
T Consensus 98 ~~~~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~~~Fis~i~~-~n~~~i----G~t--~R~g--~~---~y~f~G 165 (190)
T PF02973_consen 98 GYKNNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKSGNFISDIPG-LNSVQI----GGT--NRAG--SN---AYPFNG 165 (190)
T ss_dssp EETTEES-EEEEEEEETTTTEEEEEETTCEEEEEEECTSS-GGGSTT---EEEE----SSE--EETT--EE---ES--EE
T ss_pred cccCCceEEEEEEEEecCCCeEEEEeCCeeEEEeccccccHhhcCcC-CceEEE----cce--EeCC--Cc---eecccc
Confidence 0011346888777775 6779999999998887543210 012221 122222 221 1223 23 349999
Q ss_pred EEeEEEEeeccCC
Q 041460 215 HFQGFDISGCPAD 227 (262)
Q Consensus 215 ~~~~~~v~~c~~~ 227 (262)
.|++++|+.+..+
T Consensus 166 ~I~~l~iYn~aLs 178 (190)
T PF02973_consen 166 TIDNLKIYNRALS 178 (190)
T ss_dssp EEEEEEEESS---
T ss_pred eEEEEEEEcCcCC
Confidence 9999999988775
No 20
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=89.84 E-value=2.8 Score=33.44 Aligned_cols=70 Identities=11% Similarity=0.138 Sum_probs=45.1
Q ss_pred CCCCcEEEEEEEcC--CeEEEEECCeeEEEEEecccCCCCCC-CCCcEEEEEeecCCCCCCCCCcccccCCCCceEEEEe
Q 041460 141 PTADFHTYKILWNP--HQIVFYVDDVPIRVFKNLESIGVGYP-SKPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQ 217 (262)
Q Consensus 141 ~~~~fHtY~i~Wtp--d~I~fyVDG~~vr~~~~~~~~~~~~P-~~Pm~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~~~~ 217 (262)
+...||...+-++. .+|+.||||+++.+.... ..+ ..|+.+-. . ... ++ ....+|.-.|+
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~-~----~~~--~~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGG-R----ILL--GG-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEee-e----ccC--CC-----CCCCCceEEee
Confidence 34789999999988 789999999998654321 111 13333221 1 110 11 12348999999
Q ss_pred EEEEeeccCC
Q 041460 218 GFDISGCPAD 227 (262)
Q Consensus 218 ~~~v~~c~~~ 227 (262)
.+||+.+.-.
T Consensus 122 evriy~~aLs 131 (133)
T smart00560 122 EVRVYNRALT 131 (133)
T ss_pred EEEEeccccC
Confidence 9999987664
No 21
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=88.43 E-value=10 Score=32.05 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=26.4
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeeEEEEE
Q 041460 142 TADFHTYKILWNPHQIVFYVDDVPIRVFK 170 (262)
Q Consensus 142 ~~~fHtY~i~Wtpd~I~fyVDG~~vr~~~ 170 (262)
...||..++.+..+.+++|||++++.+..
T Consensus 116 dg~WH~lal~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 116 DGQWHKLALSVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred cCCceEEEEEEeCCEEEEEECCcccccee
Confidence 67899999999999999999999997753
No 22
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=88.33 E-value=0.92 Score=39.15 Aligned_cols=28 Identities=29% Similarity=0.730 Sum_probs=24.8
Q ss_pred CCcEEEEEEEcC--CeEEEEECCeeEEEEE
Q 041460 143 ADFHTYKILWNP--HQIVFYVDDVPIRVFK 170 (262)
Q Consensus 143 ~~fHtY~i~Wtp--d~I~fyVDG~~vr~~~ 170 (262)
.+||.|.|...| ..-.|||||++|++..
T Consensus 92 ~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 92 HGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp CSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred cceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 579999999987 8899999999999853
No 23
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=82.66 E-value=6.1 Score=35.34 Aligned_cols=76 Identities=17% Similarity=0.337 Sum_probs=46.6
Q ss_pred EEEEEEecCCC-----CCceEEEEEEeecC----------------CCCCceE-EEEcCCCCCCCcEEEeeEee-CCcC-
Q 041460 74 FHLKMKLPDKD-----SAGIVTAFYLTSQG----------------DKHDELD-FEFLGNREGKPITLQTNVFA-NGVG- 129 (262)
Q Consensus 74 ~EaR~K~p~g~-----~~G~~~Afwl~~~~----------------~~~~EID-iE~lG~~~g~p~~~~tn~~~-~g~~- 129 (262)
|-.+.++|... ...=.||+||+... ..++|.| ||.|... +. .+.+.+|. +|..
T Consensus 103 Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g--~~-k~~St~H~~qG~~~ 179 (235)
T PF10287_consen 103 FLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSG--DD-KLKSTFHDYQGTDD 179 (235)
T ss_pred EEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCC--Cc-eeEEEEecccCccc
Confidence 66777888731 13457999998652 2599999 6999763 22 56666766 3321
Q ss_pred -----CcceeEeccCCCCCCcEEEEEEEcCC
Q 041460 130 -----NREQRMHLWFDPTADFHTYKILWNPH 155 (262)
Q Consensus 130 -----~~~~~~~l~~d~~~~fHtY~i~Wtpd 155 (262)
+...-+ -.|.+..-++++.++.+
T Consensus 180 ~~~g~G~~~yf---~RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 180 INGGGGSSDYF---KRPTSGTMKVAVIFDSS 207 (235)
T ss_pred cCCCCCCCCcc---cCCCCCCeEEEEEEcCC
Confidence 111111 13566778888887643
No 24
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=82.45 E-value=2.9 Score=34.63 Aligned_cols=108 Identities=16% Similarity=0.304 Sum_probs=55.0
Q ss_pred CcceEEEceeeEeEEEEEEEEecCCCCCceEEEEEEeec--C-----CCCCceEEEEcCCCCCCCcEEEeeEeeCCcCCc
Q 041460 59 SGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQ--G-----DKHDELDFEFLGNREGKPITLQTNVFANGVGNR 131 (262)
Q Consensus 59 sga~i~S~~~f~YG~~EaR~K~p~g~~~G~~~Afwl~~~--~-----~~~~EIDiE~lG~~~g~p~~~~tn~~~~g~~~~ 131 (262)
.++-|.++..|.=..+++.+|+.++ | -.++++-.. . ...-|+.|.--+.....+. ....++.......
T Consensus 42 ~~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~~~~~-~~G~~~~~~~~~~ 116 (185)
T PF06439_consen 42 GGGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGTGLPN-STGSLYDEPPWQL 116 (185)
T ss_dssp SS--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCSTTTT-STTSBTTTB-TCB
T ss_pred CcceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcceEEEEEEECCCCccCCCC-ccceEEEeccccc
Confidence 4577888888877789999998543 2 344444333 1 2333544432211100000 0000000000000
Q ss_pred ceeEeccCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEEec
Q 041460 132 EQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNL 172 (262)
Q Consensus 132 ~~~~~l~~d~~~~fHtY~i~Wtpd~I~fyVDG~~vr~~~~~ 172 (262)
..... ...+..+||++.|.-..++|+.+|||++|.+++..
T Consensus 117 ~~~~~-~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 117 EPSVN-VAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp -SSS---S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred ccccc-ccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 00000 11246799999999999999999999999988753
No 25
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=81.30 E-value=34 Score=29.40 Aligned_cols=69 Identities=14% Similarity=0.437 Sum_probs=43.0
Q ss_pred CCCCcEEEEEE--EcC---CeEEEEECCeeEEEEEecccCCCCCCC-CCcEEEEEeecCCCCCCCCCcccccCCCCceEE
Q 041460 141 PTADFHTYKIL--WNP---HQIVFYVDDVPIRVFKNLESIGVGYPS-KPMQIEASLWNGESWATDGGRTKIDWTHAPFKA 214 (262)
Q Consensus 141 ~~~~fHtY~i~--Wtp---d~I~fyVDG~~vr~~~~~~~~~~~~P~-~Pm~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~ 214 (262)
....||.+.|+ |.+ ..|+.++||+++..++... .++. ...|+.+.|.-.+ |....+ . .+-..
T Consensus 150 ~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~----~~~~~~~~y~K~GiYr~~-~~~~~~----~---~~~~v 217 (224)
T PF14099_consen 150 ERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT----GYNDDRGPYFKFGIYRSG-WKNDPN----E---SDTQV 217 (224)
T ss_dssp -TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE----CECCSSEEEEEEEEEEHC-CHHHSC---------SS-E
T ss_pred CCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc----eeCCCCcceeEEEEECCC-CcCCCc----c---cccEE
Confidence 35889988776 775 6799999999998887632 2444 6778888887543 221111 1 11118
Q ss_pred EEeEEEE
Q 041460 215 HFQGFDI 221 (262)
Q Consensus 215 ~~~~~~v 221 (262)
+||+|++
T Consensus 218 y~D~v~~ 224 (224)
T PF14099_consen 218 YYDNVRI 224 (224)
T ss_dssp EEEEEE-
T ss_pred EeccccC
Confidence 8999875
No 26
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=80.91 E-value=9.7 Score=32.69 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=48.5
Q ss_pred CCCCcEEEEEEEc--CCeEEEEECCeeEEEEEecccCCCCCCCCCcEEEEEeecCCCCCCCCCcccccCCCCceEEEEeE
Q 041460 141 PTADFHTYKILWN--PHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQG 218 (262)
Q Consensus 141 ~~~~fHtY~i~Wt--pd~I~fyVDG~~vr~~~~~~~~~~~~P~~Pm~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~~~~~ 218 (262)
....||...+.|+ ..++.+||||+++.+-. -..+..++. ...|.|.--- ..+ || ..+. ...|.-.|+.
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~--~~~~~~~~~-~g~l~lG~~q-~~~---gg--~~~~-~~~f~G~I~~ 157 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS--LKKGYTVGP-GGSIILGQEQ-DSY---GG--GFDA-TQSFVGEISD 157 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc--ccCCCEECC-CCeEEEeecc-cCC---CC--CCCC-CcceEEEEce
Confidence 4678999999998 45699999999885432 111222332 2233333210 112 34 3443 3489999999
Q ss_pred EEEeeccCCC
Q 041460 219 FDISGCPADD 228 (262)
Q Consensus 219 ~~v~~c~~~~ 228 (262)
|++.+..-.+
T Consensus 158 v~iw~~~Ls~ 167 (201)
T cd00152 158 VNMWDSVLSP 167 (201)
T ss_pred eEEEcccCCH
Confidence 9999887764
No 27
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=77.89 E-value=31 Score=26.98 Aligned_cols=85 Identities=15% Similarity=0.154 Sum_probs=46.6
Q ss_pred EeEEEEEEEEecCCCCCceEEEEEEeecCCCCCceEEEEcCCCCCCCcEEEeeEeeCCcCCcceeEeccC-CCCCCcEEE
Q 041460 70 GSGFFHLKMKLPDKDSAGIVTAFYLTSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWF-DPTADFHTY 148 (262)
Q Consensus 70 ~YG~~EaR~K~p~g~~~G~~~Afwl~~~~~~~~EIDiE~lG~~~g~p~~~~tn~~~~g~~~~~~~~~l~~-d~~~~fHtY 148 (262)
....+++++|.... .|+. |++-+. ...+.|-+|.... .+...+-. + .....+.... -....||..
T Consensus 20 ~~~~i~~~frt~~~--~g~l--~~~~~~-~~~~~~~l~l~~g------~l~~~~~~-g--~~~~~~~~~~~v~dg~Wh~v 85 (151)
T cd00110 20 TRLSISFSFRTTSP--NGLL--LYAGSQ-NGGDFLALELEDG------RLVLRYDL-G--SGSLVLSSKTPLNDGQWHSV 85 (151)
T ss_pred ceeEEEEEEEeCCC--CeEE--EEecCC-CCCCEEEEEEECC------EEEEEEcC-C--cccEEEEccCccCCCCEEEE
Confidence 34467777777654 4554 222222 1244555565532 23322221 1 1112222211 135689999
Q ss_pred EEEEcCCeEEEEECCeeEEE
Q 041460 149 KILWNPHQIVFYVDDVPIRV 168 (262)
Q Consensus 149 ~i~Wtpd~I~fyVDG~~vr~ 168 (262)
.+.+....++.+|||..+.+
T Consensus 86 ~i~~~~~~~~l~VD~~~~~~ 105 (151)
T cd00110 86 SVERNGRSVTLSVDGERVVE 105 (151)
T ss_pred EEEECCCEEEEEECCccEEe
Confidence 99999999999999985443
No 28
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=62.04 E-value=1e+02 Score=26.44 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=48.2
Q ss_pred CCCCcEEEEEEEc--CCeEEEEECCeeEEEEEecccCCCCCCCCCcEEEEEeecCCCCCCCCCcccccCCCCceEEEEeE
Q 041460 141 PTADFHTYKILWN--PHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQG 218 (262)
Q Consensus 141 ~~~~fHtY~i~Wt--pd~I~fyVDG~~vr~~~~~~~~~~~~P~~Pm~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~~~~~ 218 (262)
....||...+.|+ ..++.+||||+++.. . .-..+..++ .+-.|+|.. .-+.+ || ..+. ...|.-.++.
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~-~-~~~~g~~i~-~~G~lvlGq-~qd~~---gg--~f~~-~~~f~G~i~~ 157 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR-K-GLAKGYTVK-PGGSIILGQ-EQDSY---GG--GFDA-TQSFVGEIGD 157 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc-c-cccCCcEEC-CCCEEEEEe-cccCC---CC--CCCC-CcceeEEEee
Confidence 3678999999997 456999999998621 1 111122233 223344443 11223 34 3443 3479999999
Q ss_pred EEEeeccCCC
Q 041460 219 FDISGCPADD 228 (262)
Q Consensus 219 ~~v~~c~~~~ 228 (262)
|+|.+..-.+
T Consensus 158 v~iw~~~Ls~ 167 (206)
T smart00159 158 LNMWDSVLSP 167 (206)
T ss_pred eEEecccCCH
Confidence 9999887764
No 29
>smart00282 LamG Laminin G domain.
Probab=54.15 E-value=68 Score=24.86 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=23.6
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeeEEE
Q 041460 142 TADFHTYKILWNPHQIVFYVDDVPIRV 168 (262)
Q Consensus 142 ~~~fHtY~i~Wtpd~I~fyVDG~~vr~ 168 (262)
...||.-.|.-....+..+|||+....
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~ 87 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVS 87 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCcccc
Confidence 568999999999999999999976544
No 30
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=53.76 E-value=15 Score=37.64 Aligned_cols=52 Identities=23% Similarity=0.416 Sum_probs=40.7
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeeEEEEEecccCCCCCCCCCcEEEEEeecCCCCC
Q 041460 142 TADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGESWA 197 (262)
Q Consensus 142 ~~~fHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~~~~~P~~Pm~l~lnlw~gg~Wa 197 (262)
.++||-|.+.-.=-.++.||||+...-..-. ..||-+|.++-..|-+|-=|-
T Consensus 441 D~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~----ddwplHpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 441 DNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT----DDWPLHPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhheeEEeecCceEEEEEcCcccCCceec----cCCccCcccccceeEEeeecc
Confidence 6899999999975559999999876432211 368888888888888888887
No 31
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=44.50 E-value=92 Score=27.59 Aligned_cols=59 Identities=19% Similarity=0.404 Sum_probs=37.5
Q ss_pred CCcEEEEEEEcCCeEEEEECCeeEEEEEecccCCCCCCCCCcEEEEEeecCCCCCCCCCcccccCCC-CceEEEEeEEEE
Q 041460 143 ADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGESWATDGGRTKIDWTH-APFKAHFQGFDI 221 (262)
Q Consensus 143 ~~fHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~~~~~P~~Pm~l~lnlw~gg~Wa~~GG~~~~d~~~-~P~~~~~~~~~v 221 (262)
..++.-.+.=....|.|.|||.++..++.... ...|. . .+| +|-..+ +|..|.|++++|
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~--~~gPv--------------l--~~G--~IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGS--TYGPV--------------L--RGG--RIGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SS--SSSS-------------------SB--EEEEEEETT-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCC--ccCCc--------------c--cCc--EeeeeccchhhhhhccccC
Confidence 35666677788999999999999999875421 11121 0 145 455544 599999999886
No 32
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.38 E-value=2.1e+02 Score=25.32 Aligned_cols=55 Identities=16% Similarity=0.356 Sum_probs=40.6
Q ss_pred eEEEEeeCCCcceEEEceeeEeEEEEEEEEecCCCCCceEEEEEEe-ecC--C-CCCceEEEEc
Q 041460 50 AIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLT-SQG--D-KHDELDFEFL 109 (262)
Q Consensus 50 ~L~Ltl~~~sga~i~S~~~f~YG~~EaR~K~p~g~~~G~~~Afwl~-~~~--~-~~~EIDiE~l 109 (262)
.+.+.+..+.|-.+.++..+.-|+|...+.- .|...+-+.. ..+ | ...+||+++-
T Consensus 61 ~~~~~Vts~~G~~~~~~env~~gqFaFta~e-----~~~y~~Cf~~~~~~~~p~~~~~I~ld~k 119 (210)
T KOG1691|consen 61 KLSVKVTSPYGNNLHSKENVTKGQFAFTAEE-----SGMYEACFTADVPGHKPETKRSIDLDWK 119 (210)
T ss_pred eEEEEEEcCCCceeehhhccccceEEEEecc-----CCcEEEEEecccCCCCCCcceEEEEEee
Confidence 5888888999999999999999998887753 4666665544 222 3 3478998885
No 33
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=33.90 E-value=58 Score=24.44 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=26.8
Q ss_pred CCCeEEeCCCceEEEEeeCCCcceEEEceeeEeEEEEEEEEecCC
Q 041460 39 NDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDK 83 (262)
Q Consensus 39 ~~nv~~~~~G~~L~Ltl~~~sga~i~S~~~f~YG~~EaR~K~p~g 83 (262)
++.|.+.-.++.|.++..+..--+-.....+.||.|+=++.+|.+
T Consensus 21 kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~ 65 (87)
T cd06482 21 PDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPG 65 (87)
T ss_pred HHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCC
Confidence 444555445557777775432111011235799999999999964
No 34
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=32.58 E-value=2.1e+02 Score=21.24 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=45.2
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeeEEEEEecccCCCCCCCCCcEEEEEeecCCCCCCCCCcccccCCCCceEEEEeEEEE
Q 041460 142 TADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDI 221 (262)
Q Consensus 142 ~~~fHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~~~~~P~~Pm~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~~~~~~~v 221 (262)
...||.-.+.-....++..||+........... ...-+...-.++.||.-..... ...-....|.--+++++|
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~-----~~~~~~~~~~l~iGg~~~~~~~--~~~~~~~~f~Gci~~l~v 125 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSS-----SSDSLDPDGSLYIGGLPESNQP--SGSVDTPGFVGCIRDLRV 125 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSST-----THHCBESEEEEEESSTTTTCTC--TTSSTTSB-EEEEEEEEE
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEecccc-----ceecccCCCCEEEecccCcccc--ccccCCCCcEEEcCeEEE
Confidence 577999999999999999999999887653211 1002223334666665331111 101114578888888877
Q ss_pred e
Q 041460 222 S 222 (262)
Q Consensus 222 ~ 222 (262)
.
T Consensus 126 n 126 (128)
T PF02210_consen 126 N 126 (128)
T ss_dssp T
T ss_pred C
Confidence 4
No 35
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=29.97 E-value=49 Score=25.39 Aligned_cols=6 Identities=17% Similarity=0.058 Sum_probs=2.4
Q ss_pred hhhHHH
Q 041460 4 SQFLGF 9 (262)
Q Consensus 4 ~~~~~~ 9 (262)
|..|-|
T Consensus 3 SK~~ll 8 (95)
T PF07172_consen 3 SKAFLL 8 (95)
T ss_pred hhHHHH
Confidence 444333
No 36
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=29.65 E-value=74 Score=23.03 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=27.9
Q ss_pred EeCCCeEEeCCCceEEEEeeCCCcceEEEceeeEeEEEEEEEEecCC
Q 041460 37 WGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDK 83 (262)
Q Consensus 37 w~~~nv~~~~~G~~L~Ltl~~~sga~i~S~~~f~YG~~EaR~K~p~g 83 (262)
+.+++|++.-+++.|.++..+..... ...+.+|+|+=++++|..
T Consensus 18 ~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~ 61 (83)
T cd06526 18 FKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEG 61 (83)
T ss_pred CCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCC
Confidence 34555665545667777765432211 345678999999999864
No 37
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=29.33 E-value=1.7e+02 Score=25.04 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=42.1
Q ss_pred CCCCcEEEEEEEcC--CeEEEEECCeeEEEEEecccCCCCCCCCCcEEEEEeecCCCCCCCCCcccccCCCCceEEEEeE
Q 041460 141 PTADFHTYKILWNP--HQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQG 218 (262)
Q Consensus 141 ~~~~fHtY~i~Wtp--d~I~fyVDG~~vr~~~~~~~~~~~~P~~Pm~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~~~~~ 218 (262)
....||.+.+-|+. .++.+|+||+....-. -..+..+|... .++|..-- +- .|| ..|- ...|.-++..
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~--~~~g~~i~~gG-~~vlGQeQ--d~--~gG--~fd~-~q~F~G~i~~ 151 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSSTG--LATGHSIPGGG-TLVLGQEQ--DS--YGG--GFDE-SQAFVGEISD 151 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEEE--SSTT--B-SSE-EEEESS-B--SB--TTB--TCSG-GGB--EEEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEeccccc--ccCCceECCCC-EEEECccc--cc--cCC--CcCC-ccEeeEEEec
Confidence 35789999999975 7799999999543321 12233444322 23343211 21 245 3442 3489999999
Q ss_pred EEEeeccCCC
Q 041460 219 FDISGCPADD 228 (262)
Q Consensus 219 ~~v~~c~~~~ 228 (262)
|++.+..-++
T Consensus 152 ~~iWd~vLs~ 161 (195)
T PF00354_consen 152 FNIWDRVLSP 161 (195)
T ss_dssp EEEESS---H
T ss_pred eEEEeeeCCH
Confidence 9998887763
No 38
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=26.17 E-value=55 Score=26.09 Aligned_cols=17 Identities=24% Similarity=0.628 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHhhhhc
Q 041460 6 FLGFFVFLLLSRVIAAA 22 (262)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (262)
|+||+.+|+||++++++
T Consensus 64 fvglii~LivSLaLVsF 80 (128)
T PF15145_consen 64 FVGLIIVLIVSLALVSF 80 (128)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67888999999887666
No 39
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=25.93 E-value=74 Score=23.35 Aligned_cols=34 Identities=12% Similarity=0.270 Sum_probs=20.8
Q ss_pred CeEEEEECCeeEEEEEecccCCCCCCC-CCcEEEEEe
Q 041460 155 HQIVFYVDDVPIRVFKNLESIGVGYPS-KPMQIEASL 190 (262)
Q Consensus 155 d~I~fyVDG~~vr~~~~~~~~~~~~P~-~Pm~l~lnl 190 (262)
..+.|||||+.+.+-.... ...++- .|-.-.|.+
T Consensus 43 ~~~~W~vdg~~~g~~~~~~--~~~~~~~~~G~h~l~v 77 (89)
T PF06832_consen 43 GPVYWFVDGEPLGTTQPGH--QLFWQPDRPGEHTLTV 77 (89)
T ss_pred CcEEEEECCEEcccCCCCC--eEEeCCCCCeeEEEEE
Confidence 3788999999996543221 123333 666666665
No 40
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=25.61 E-value=98 Score=24.16 Aligned_cols=29 Identities=10% Similarity=0.129 Sum_probs=23.7
Q ss_pred CCCCcEEEEEEEcCCeEEEEECCeeEEEEE
Q 041460 141 PTADFHTYKILWNPHQIVFYVDDVPIRVFK 170 (262)
Q Consensus 141 ~~~~fHtY~i~Wtpd~I~fyVDG~~vr~~~ 170 (262)
+.++-|++.+. ..+..+++|||+++-...
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 36778888888 888899999999996543
No 41
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=24.64 E-value=1.5e+02 Score=24.89 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=22.6
Q ss_pred cEEEEEEEcCCeEEEEECCeeEEEE
Q 041460 145 FHTYKILWNPHQIVFYVDDVPIRVF 169 (262)
Q Consensus 145 fHtY~i~Wtpd~I~fyVDG~~vr~~ 169 (262)
=|.|+|--..|.+..+++|..+++-
T Consensus 104 g~~~RivL~kdtm~~w~NG~~l~Ta 128 (187)
T KOG4352|consen 104 GQEYRIVLKKDTMSLWVNGDELRTA 128 (187)
T ss_pred CceEEEEEeccceeeEEcCcccccc
Confidence 3999999999999999999998873
No 42
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=21.86 E-value=7e+02 Score=23.75 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=20.9
Q ss_pred cEEEEEEEcCCe-EEEEECCeeEEE
Q 041460 145 FHTYKILWNPHQ-IVFYVDDVPIRV 168 (262)
Q Consensus 145 fHtY~i~Wtpd~-I~fyVDG~~vr~ 168 (262)
-|.|++.-.|+. -...|||+.+-+
T Consensus 170 tHlYTlIlRPd~TYeVkIDn~~~es 194 (406)
T KOG0674|consen 170 THLYTLILRPDATYEVKIDNQQVES 194 (406)
T ss_pred ceeEEEEecCCCeeEEEEccccccc
Confidence 799999999986 678999999755
Done!