BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041463
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 141/414 (34%), Positives = 191/414 (46%), Gaps = 93/414 (22%)
Query: 30 LDELDVAYNELRGRVPNSLGFNFPA---TVDLSSNNFEGRLPLCIPKSIGNLKQ-LITLV 85
L LD+++NE G +P SL N A T+DLSSNNF G + +P N K L L
Sbjct: 345 LKVLDLSFNEFSGELPESLT-NLSASLLTLDLSSNNFSGPI---LPNLCQNPKNTLQELY 400
Query: 86 ISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSL------------------- 126
+ NN +G+IP SN S L L +S N LSG+IP S+GSL
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 127 -----RTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIG--------- 172
+TL L+L N L+GE+P L NCT + + L +N L+G IP WIG
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 173 -------ASMPGLLH------ILDLSHNDLSGFIPPRVGNLSD----------------- 202
++P L LDL+ N +G IP + S
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580
Query: 203 --MKVEPP--------KSVQHEGRLRVVTK-----------GSERKYFTTLYLVNLLDLS 241
MK E + ++ E R+ T+ G F + LD+S
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 242 STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM 301
LS IP E+ S+ +L LNL HN + G IP+E+G+ L LDLS NKL G IP +M
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 302 ASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCPENG 355
++L + ++LS NNLSG IP QF+T P+ + N LCG PLP+ P N
Sbjct: 701 SALTMLTEIDLSNNNLSGPIPEMGQFETF-PPAKFLNNPGLCGYPLPRCDPSNA 753
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 146/319 (45%), Gaps = 41/319 (12%)
Query: 30 LDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNN 89
L L ++ N++ G V S N +D+SSNNF +P +G+ L L IS N
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNL-EFLDVSSNNFSTGIPF-----LGDCSALQHLDISGN 233
Query: 90 NLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKN 149
LSG+ S + L +L++S+N G IP L++L++L L N +GE+P L
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSG 291
Query: 150 -CTFMESLDLGDNNLSGNIPAWIGA------------------------SMPGLLHILDL 184
C + LDL N+ G +P + G+ M GL +LDL
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL-KVLDL 350
Query: 185 SHNDLSGFIPPRVGNLS-DMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSST 243
S N+ SG +P + NLS + S G + + + LYL N
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN------N 404
Query: 244 NLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMAS 303
+ +IP L++ L +L+LS N+L G IP +G+ L L L N L G IP +
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 304 LIFMNHLNLSYNNLSGEIP 322
+ + L L +N+L+GEIP
Sbjct: 465 VKTLETLILDFNDLTGEIP 483
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 152/322 (47%), Gaps = 39/322 (12%)
Query: 30 LDELDVAYNELR--GRVPNSLGFNFPATVDLSSNNFEGR--LPLCIPKSIGNLKQLIT-- 83
L L+V+ N L G+V L N +DLS+N+ G + + G LK L
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187
Query: 84 -----------------LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSL 126
L +S+NN S IP L + S L LD+S N LSG +I +
Sbjct: 188 NKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL-GDCSALQHLDISGNKLSGDFSRAISTC 246
Query: 127 RTLRFLVLRNNYLSGELP-LSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLS 185
L+ L + +N G +P L LK+ ++ L L +N +G IP ++ + L LDLS
Sbjct: 247 TELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFLSGACDTLTG-LDLS 302
Query: 186 HNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNL 245
N G +PP G+ S ++ S G L + T R + +LDLS
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG-------LKVLDLSFNEF 355
Query: 246 SAEIPAELTSL-VHLGTLNLSHNHLVGKI-PEEIGNFE-WLETLDLSKNKLSGSIPPSMA 302
S E+P LT+L L TL+LS N+ G I P N + L+ L L N +G IPP+++
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 303 SLIFMNHLNLSYNNLSGEIPNT 324
+ + L+LS+N LSG IP++
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSS 437
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 125/256 (48%), Gaps = 23/256 (8%)
Query: 86 ISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP--ESIGSLRTLRFLVLRNNYLS--G 141
+SN++++G + F S+ L LD+S NSLSG + S+GS L+FL + +N L G
Sbjct: 84 LSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 142 ELPLSLKNCTFMESLDLGDNNLSG-NIPAWIGASMPGLLHILDLSHNDLSGFIP-PRVGN 199
++ LK +E LDL N++SG N+ W+ + G L L +S N +SG + R N
Sbjct: 143 KVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 201
Query: 200 LSDMKVEP------------PKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSA 247
L + V ++QH G + +T + LL++SS
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 248 EIPAELTSLVHLGTLNLSHNHLVGKIPEEI-GNFEWLETLDLSKNKLSGSIPPSMASLIF 306
IP L L L+L+ N G+IP+ + G + L LDLS N G++PP S
Sbjct: 262 PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319
Query: 307 MNHLNLSYNNLSGEIP 322
+ L LS NN SGE+P
Sbjct: 320 LESLALSSNNFSGELP 335
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 141/414 (34%), Positives = 191/414 (46%), Gaps = 93/414 (22%)
Query: 30 LDELDVAYNELRGRVPNSLGFNFPA---TVDLSSNNFEGRLPLCIPKSIGNLKQ-LITLV 85
L LD+++NE G +P SL N A T+DLSSNNF G + +P N K L L
Sbjct: 342 LKVLDLSFNEFSGELPESLT-NLSASLLTLDLSSNNFSGPI---LPNLCQNPKNTLQELY 397
Query: 86 ISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSL------------------- 126
+ NN +G+IP SN S L L +S N LSG+IP S+GSL
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 127 -----RTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIG--------- 172
+TL L+L N L+GE+P L NCT + + L +N L+G IP WIG
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 173 -------ASMPGLLH------ILDLSHNDLSGFIPPRVGNLSD----------------- 202
++P L LDL+ N +G IP + S
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 577
Query: 203 --MKVEPP--------KSVQHEGRLRVVTK-----------GSERKYFTTLYLVNLLDLS 241
MK E + ++ E R+ T+ G F + LD+S
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 242 STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM 301
LS IP E+ S+ +L LNL HN + G IP+E+G+ L LDLS NKL G IP +M
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 302 ASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCPENG 355
++L + ++LS NNLSG IP QF+T P+ + N LCG PLP+ P N
Sbjct: 698 SALTMLTEIDLSNNNLSGPIPEMGQFETF-PPAKFLNNPGLCGYPLPRCDPSNA 750
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 146/319 (45%), Gaps = 41/319 (12%)
Query: 30 LDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNN 89
L L ++ N++ G V S N +D+SSNNF +P +G+ L L IS N
Sbjct: 177 LKHLAISGNKISGDVDVSRCVNL-EFLDVSSNNFSTGIPF-----LGDCSALQHLDISGN 230
Query: 90 NLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKN 149
LSG+ S + L +L++S+N G IP L++L++L L N +GE+P L
Sbjct: 231 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSG 288
Query: 150 -CTFMESLDLGDNNLSGNIPAWIGA------------------------SMPGLLHILDL 184
C + LDL N+ G +P + G+ M GL +LDL
Sbjct: 289 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL-KVLDL 347
Query: 185 SHNDLSGFIPPRVGNLS-DMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSST 243
S N+ SG +P + NLS + S G + + + LYL N
Sbjct: 348 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN------N 401
Query: 244 NLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMAS 303
+ +IP L++ L +L+LS N+L G IP +G+ L L L N L G IP +
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 304 LIFMNHLNLSYNNLSGEIP 322
+ + L L +N+L+GEIP
Sbjct: 462 VKTLETLILDFNDLTGEIP 480
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 152/322 (47%), Gaps = 39/322 (12%)
Query: 30 LDELDVAYNELR--GRVPNSLGFNFPATVDLSSNNFEGR--LPLCIPKSIGNLKQLIT-- 83
L L+V+ N L G+V L N +DLS+N+ G + + G LK L
Sbjct: 125 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 184
Query: 84 -----------------LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSL 126
L +S+NN S IP L + S L LD+S N LSG +I +
Sbjct: 185 NKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL-GDCSALQHLDISGNKLSGDFSRAISTC 243
Query: 127 RTLRFLVLRNNYLSGELP-LSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLS 185
L+ L + +N G +P L LK+ ++ L L +N +G IP ++ + L LDLS
Sbjct: 244 TELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFLSGACDTLTG-LDLS 299
Query: 186 HNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNL 245
N G +PP G+ S ++ S G L + T R + +LDLS
Sbjct: 300 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG-------LKVLDLSFNEF 352
Query: 246 SAEIPAELTSL-VHLGTLNLSHNHLVGKI-PEEIGNFE-WLETLDLSKNKLSGSIPPSMA 302
S E+P LT+L L TL+LS N+ G I P N + L+ L L N +G IPP+++
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 303 SLIFMNHLNLSYNNLSGEIPNT 324
+ + L+LS+N LSG IP++
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSS 434
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 125/256 (48%), Gaps = 23/256 (8%)
Query: 86 ISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP--ESIGSLRTLRFLVLRNNYLS--G 141
+SN++++G + F S+ L LD+S NSLSG + S+GS L+FL + +N L G
Sbjct: 81 LSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 142 ELPLSLKNCTFMESLDLGDNNLSG-NIPAWIGASMPGLLHILDLSHNDLSGFIP-PRVGN 199
++ LK +E LDL N++SG N+ W+ + G L L +S N +SG + R N
Sbjct: 140 KVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 198
Query: 200 LSDMKVEP------------PKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSA 247
L + V ++QH G + +T + LL++SS
Sbjct: 199 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 258
Query: 248 EIPAELTSLVHLGTLNLSHNHLVGKIPEEI-GNFEWLETLDLSKNKLSGSIPPSMASLIF 306
IP L L L+L+ N G+IP+ + G + L LDLS N G++PP S
Sbjct: 259 PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 316
Query: 307 MNHLNLSYNNLSGEIP 322
+ L LS NN SGE+P
Sbjct: 317 LESLALSSNNFSGELP 332
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 142/294 (48%), Gaps = 39/294 (13%)
Query: 56 VDLSSNNFEGRLPLCIPKSIGNLKQLITLVISN-NNLSGEIPLLFSNSSFLYILDMSNNS 114
+DLS N P IP S+ NL L L I NNL G IP + + L+ L +++ +
Sbjct: 55 LDLSGLNLPKPYP--IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112
Query: 115 LSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGAS 174
+SG+IP+ + ++TL L N LSG LP S+ + + + N +SG IP G S
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-S 171
Query: 175 MPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYL 234
L + +S N L+G IPP NL+ V+ +++ EG V+ GS++
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML-EGDASVLF-GSDKN------- 222
Query: 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294
T +HL +L+ + +GK+ G + L LDL N++
Sbjct: 223 -------------------TQKIHLAKNSLAFD--LGKV----GLSKNLNGLDLRNNRIY 257
Query: 295 GSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLP 348
G++P + L F++ LN+S+NNL GEIP Q D S Y N LCG PLP
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF-DVSAYANNKCLCGSPLP 310
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 111/209 (53%), Gaps = 18/209 (8%)
Query: 3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN 62
T+L L + +S IPD+ Q+ TL LD +YN L G +P S+ + P V ++
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSIS-SLPNLVGIT--- 155
Query: 63 FEG-RLPLCIPKSIGNLKQLIT-LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP 120
F+G R+ IP S G+ +L T + IS N L+G+IP F+N + ++ D+S N L G
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV-DLSRNMLEGDAS 214
Query: 121 ESIGSLRTLRFLVLRNNYLS---GELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPG 177
GS + + + L N L+ G++ LS KN + LDL +N + G +P G +
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KN---LNGLDLRNNRIYGTLPQ--GLTQLK 268
Query: 178 LLHILDLSHNDLSGFIPPRVGNLSDMKVE 206
LH L++S N+L G I P+ GNL V
Sbjct: 269 FLHSLNVSFNNLCGEI-PQGGNLQRFDVS 296
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 106/243 (43%), Gaps = 15/243 (6%)
Query: 81 LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLS 140
+ L +++N L P F+ S L ILD NS+S PE L L+ L L++N LS
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 141 GELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNL 200
+ CT + LDL N++ I + + L+ LDLSHN LS L
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHK-IKSNPFKNQKNLIK-LDLSHNGLSS------TKL 138
Query: 201 SDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLG 260
+ +++ SE F + LDLSS L P ++ L
Sbjct: 139 GTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLF 198
Query: 261 TLNLSHN----HLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMN--HLNLSY 314
L L++ HL K+ E+ N ++ L L+ N+L + + + L + N L+LSY
Sbjct: 199 ALLLNNAQLNPHLTEKLCWELSNTS-IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSY 257
Query: 315 NNL 317
NNL
Sbjct: 258 NNL 260
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 236 NLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG 295
N+ D S L+ IP +L S ++ LNL+HN L P + L LD N +S
Sbjct: 7 NVADCSHLKLT-HIPDDLPS--NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISK 63
Query: 296 SIPPSMASLIFMNHLNLSYNNLS 318
P L + LNL +N LS
Sbjct: 64 LEPELCQILPLLKVLNLQHNELS 86
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 122/292 (41%), Gaps = 48/292 (16%)
Query: 57 DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS 116
D+S FEG + + +SI NL++ IS+N F S L LD++ LS
Sbjct: 242 DISPAVFEGLCEMSV-ESI-NLQKHYFFNISSNT--------FHCFSGLQELDLTATHLS 291
Query: 117 GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMP 176
+P + L TL+ LVL N +S N + L + N + ++
Sbjct: 292 -ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 177 GLLHILDLSHNDL--SGFIPPRVGNLSDMK-----VEPPKSVQHEG-------------- 215
L LDLSH+D+ S ++ NLS ++ P S++ E
Sbjct: 351 NLRE-LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409
Query: 216 -RLRVVTKGSERKYFTTLYLVNL----LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHL- 269
RL+V S + L ++NL LD+SS L +PA L LNL NH
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA-------LQHLNLQGNHFP 462
Query: 270 VGKIPE--EIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319
G I + + LE L LS LS + SL MNH++LS+N L+
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 128/306 (41%), Gaps = 32/306 (10%)
Query: 30 LDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNN 89
L ELD+ L +G + + LS+N FE LC S N L L I N
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN---LC-QISASNFPSLTHLSIKGN 335
Query: 90 NLSGEIPL-LFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLK 148
E+ N L LD+S++ + S ++ LR L L N LS PLSLK
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNL-QLRNLSHLQSLN--LSYNEPLSLK 392
Query: 149 NCTFMESLDLGDNNLSGNIPAWIGASMP----GLLHILDLSHN--DLSGFIPPRVGNLSD 202
F E L +L+ A P LL +L+LSH+ D+S S+
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS----------SE 442
Query: 203 MKVEPPKSVQH---EGRLRVVTKGSERKY--FTTLYLVNLLDLSSTNLSAEIPAELTSLV 257
+ ++QH +G KG+ +K TL + +L LS +LS+ TSL
Sbjct: 443 QLFDGLPALQHLNLQGN--HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500
Query: 258 HLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNL 317
+ ++LSHN L E + + + + L+L+ N +S +P + L +NL N L
Sbjct: 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
Query: 318 SGEIPN 323
N
Sbjct: 560 DCTCSN 565
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 238 LDLSSTNLSAE--IPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG 295
LDLS ++ A +L +L HL TLNLSHN +G + LE LDL+ +L
Sbjct: 352 LDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHI 411
Query: 296 SIPPS-MASLIFMNHLNLSY 314
+ P S +L F+ LNL+Y
Sbjct: 412 NAPQSPFQNLHFLQVLNLTY 431
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 127/315 (40%), Gaps = 31/315 (9%)
Query: 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSN 61
+ + +L L + R SD I +Q L ELD+ L+G G N + LS N
Sbjct: 250 EMSVESLNLQEHRFSD-ISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVN 308
Query: 62 NFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPL-LFSNSSFLYILDMSNNSLSGSIP 120
+F+ LC S N L L I N + + L LD+S+N + S
Sbjct: 309 HFD---QLC-QISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDC 364
Query: 121 ES--IGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL 178
S + +L L+ L L +N G + K C +E LDL L N P ++ L
Sbjct: 365 CSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFL 424
Query: 179 ------LHILDLSHNDLSGFIPP------RVGNLSDMKVEPPKSVQHEGRLRVVTKGS-- 224
LD S+ L +P + + D + +Q G L V+ S
Sbjct: 425 QVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCG 484
Query: 225 ----ERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLG--TLNLSHNHLVGKIPEEIG 278
+++ F +L ++ +DLS +L+ + + SL HL LNL+ N + P +
Sbjct: 485 LLSIDQQAFHSLGKMSHVDLSHNSLTCD---SIDSLSHLKGIYLNLAANSINIISPRLLP 541
Query: 279 NFEWLETLDLSKNKL 293
T++LS N L
Sbjct: 542 ILSQQSTINLSHNPL 556
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 99/236 (41%), Gaps = 26/236 (11%)
Query: 108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNI 167
LD++ L G +P + L L+ LVL N+ +S N + L + N +
Sbjct: 280 LDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN--VKKL 336
Query: 168 PAWIGA-SMPGLLHILDLSHNDL--SGFIPPRVGNLSDMKV-----EPPKSVQHEG---- 215
+G G L LDLSHND+ S ++ NLS ++ P +Q +
Sbjct: 337 HLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKEC 396
Query: 216 -RLRVVTKGSERKY-------FTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHN 267
+L ++ R + F L+ + +L+L+ L L L L LNL N
Sbjct: 397 PQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGN 456
Query: 268 HLV-GKIPEE--IGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGE 320
H G I + + LE L LS L + SL M+H++LS+N+L+ +
Sbjct: 457 HFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCD 512
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 101/260 (38%), Gaps = 32/260 (12%)
Query: 105 LYILDMSNNSLS--GSIPESIGSLRTLRFLVLRNNYLSGELPLS--LKNCTFMESLDLGD 160
L LD+S N LS G +S +L++L L N G + +S +E LD
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN---GVITMSSNFLGLEQLEHLDFQH 405
Query: 161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVV 220
+NL + S+ L++ LD+SH LS ++V L++
Sbjct: 406 SNLKQMSEFSVFLSLRNLIY-LDISHTHTRVAFNGIFNGLSSLEV-----------LKMA 453
Query: 221 TKGSERKY----FTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEE 276
+ + FT L + LDLS L P SL L LN+SHN+
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513
Query: 277 IGNFEWLETLDLSKNKLSGSIPPSM----ASLIFMNHLNLSYNNLSGEIPNTNQFQTLND 332
L+ LD S N + S + +SL F LNL+ N+ + + + Q + D
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF---LNLTQNDFACTCEHQSFLQWIKD 570
Query: 333 PS--IYEGNLALCGDPLPKK 350
+ E C P K+
Sbjct: 571 QRQLLVEVERMECATPSDKQ 590
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFP--ATVDLSSNNF 63
+ + LN +I D +P + LD+++N LR S F+FP +DLS
Sbjct: 13 QCMELNFYKIPDNLP-------FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLS---- 60
Query: 64 EGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESI 123
+ + +L L TL+++ N + FS S L L +L+ I
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120
Query: 124 GSLRTLRFLVLRNNYL-SGELPLSLKNCTFMESLDLGDNNLSG 165
G L+TL+ L + +N + S +LP N T +E LDL N +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 243 TNLSAEIPAELTSLVHLGTLNLSHNHLVG-KIPEEIGNFEWLETLDLSKNKLSG 295
TNL++ + L L LN++HN + K+PE N LE LDLS NK+
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 71 IPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLR 130
+PK + N K L + +SNN +S FSN + L L +S N L P + L++LR
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 131 FLVLRNNYLS 140
L L N +S
Sbjct: 106 LLSLHGNDIS 115
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 217 LRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEE 276
L+V+ KG R T LYL N +P EL++ HL ++LS+N + +
Sbjct: 22 LKVLPKGIPRD-VTELYL-------DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQS 73
Query: 277 IGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS 318
N L TL LS N+L P + L + L+L N++S
Sbjct: 74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 273 IPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT 324
+P+E+ N++ L +DLS N++S S +++ + L LSYN L P T
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 101/260 (38%), Gaps = 32/260 (12%)
Query: 105 LYILDMSNNSLS--GSIPESIGSLRTLRFLVLRNNYLSGELPLS--LKNCTFMESLDLGD 160
L LD+S N LS G +S +L++L L N G + +S +E LD
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN---GVITMSSNFLGLEQLEHLDFQH 429
Query: 161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVV 220
+NL + S+ L++ LD+SH LS ++V L++
Sbjct: 430 SNLKQMSEFSVFLSLRNLIY-LDISHTHTRVAFNGIFNGLSSLEV-----------LKMA 477
Query: 221 TKGSERKY----FTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEE 276
+ + FT L + LDLS L P SL L LN+SHN+
Sbjct: 478 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 537
Query: 277 IGNFEWLETLDLSKNKLSGSIPPSM----ASLIFMNHLNLSYNNLSGEIPNTNQFQTLND 332
L+ LD S N + S + +SL F LNL+ N+ + + + Q + D
Sbjct: 538 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF---LNLTQNDFACTCEHQSFLQWIKD 594
Query: 333 PS--IYEGNLALCGDPLPKK 350
+ E C P K+
Sbjct: 595 QRQLLVEVERMECATPSDKQ 614
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 243 TNLSAEIPAELTSLVHLGTLNLSHNHLVG-KIPEEIGNFEWLETLDLSKNKLSG 295
TNL++ + L L LN++HN + K+PE N LE LDLS NK+
Sbjct: 134 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 79/208 (37%), Gaps = 25/208 (12%)
Query: 153 MESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQ 212
+E LD +NL + S+ L++ LD+SH LS ++V
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIY-LDISHTHTRVAFNGIFNGLSSLEV------- 154
Query: 213 HEGRLRVVTKGSERKY----FTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNH 268
L++ + + FT L + LDLS L P SL L LN+SHN+
Sbjct: 155 ----LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
Query: 269 LVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM----ASLIFMNHLNLSYNNLSGEIPNT 324
L+ LD S N + S + +SL F LNL+ N+ + +
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF---LNLTQNDFACTCEHQ 267
Query: 325 NQFQTLNDPS--IYEGNLALCGDPLPKK 350
+ Q + D + E C P K+
Sbjct: 268 SFLQWIKDQRQLLVEVERMECATPSDKQ 295
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 50 FNFPATVDLSSNNFEGR------LPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSS 103
+ PA S+N + R +P +P++I ++ + N + P FS
Sbjct: 3 LHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIR------LEQNTIKVIPPGAFSPYK 56
Query: 104 FLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSL 147
L +D+SNN +S P++ LR+L LVL N ++ ELP SL
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSL 99
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 50 FNFPATVDLSSNNFEGR------LPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSS 103
+ PA S+N + R +P +P++I ++ + N + P FS
Sbjct: 3 LHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIR------LEQNTIKVIPPGAFSPYK 56
Query: 104 FLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSL 147
L +D+SNN +S P++ LR+L LVL N ++ ELP SL
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSL 99
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 73 KSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFL 132
K++ +L L+ + +NN ++P L NSSFL I+D+ NNSL +P+ S L F+
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPEL-QNSSFLKIIDVDNNSL-KKLPDLPPS---LEFI 178
Query: 133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIP 168
NN L ELP L+N F+ ++ DNN +P
Sbjct: 179 AAGNNQLE-ELP-ELQNLPFLTAI-YADNNSLKKLP 211
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 71 IPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLR 130
+P SI NL+ L +L I N+ LS P + + L LD+ + + P G L+
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 131 FLVLRNNYLSGELPLSLKNCTFMESLDL-GDNNLSGNIPAWIGASMPG 177
L+L++ LPL + T +E LDL G NLS +P+ I A +P
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS-RLPSLI-AQLPA 302
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 118 SIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMP 176
S+P SI +L+ L+ L +RN+ LS P ++ + +E LDL N P G P
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSI 297
L+L S L + P + L HL + L ++P+ F LETL L++N L ++
Sbjct: 86 LELRSVPLP-QFPDQAFRLSHLQHXTIDAAGLX-ELPDTXQQFAGLETLTLARNPLR-AL 142
Query: 298 PPSMASLIFMNHLNLSYNNLSGEIP 322
P S+ASL + L++ E+P
Sbjct: 143 PASIASLNRLRELSIRACPELTELP 167
>pdb|4DG5|A Chain A, Crystal Structure Of Staphylococcal Phosphoglycerate
Kinase
Length = 403
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 11 NKARI----SDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGR 66
N A+I SD+IP + + + + + +EL G +++ +N P V SN +G
Sbjct: 283 NDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEG--AHTVVWNGPMGVFEFSNFAQGT 340
Query: 67 LPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI 107
+ +C K+I NLK IT++ ++ + I L F N F +I
Sbjct: 341 IGVC--KAIANLKDAITIIGGGDSAAAAISLGFEN-DFTHI 378
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 18/127 (14%)
Query: 102 SSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLS-----GELPLSLKNCTFMESL 156
S FL+ LD SNN L+ ++ E+ G L L L+L+ N L E+ +K+ ++ L
Sbjct: 324 SPFLH-LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS---LQQL 379
Query: 157 DLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFI----PPRVGNL----SDMKVEPP 208
D+ N++S + + LL L++S N L+ I PPR+ L + +K P
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLS-LNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPK 438
Query: 209 KSVQHEG 215
+ V+ E
Sbjct: 439 QVVKLEA 445
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 21/222 (9%)
Query: 77 NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRN 136
NLK L TL++ NN +S P F+ L L +S N L +PE + +TL+ L +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHE 130
Query: 137 NYLSGELPLSLKNCTFMESLDLGDNNL-SGNIP--AWIGASMPGLLHILDLSHNDLSGFI 193
N ++ M ++LG N L S I A+ G + I D + + +
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL 190
Query: 194 PPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAEL 253
PP +L+++ ++ K +TK + L + L LS ++SA L
Sbjct: 191 PP---SLTELHLDGNK----------ITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 254 TSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG 295
+ HL L+L++N LV K+P + + ++++ + L N +S
Sbjct: 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 90/235 (38%), Gaps = 35/235 (14%)
Query: 107 ILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGN 166
+LD+ NN ++ +L+ L L+L NN +S P + +E L L N L
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-- 113
Query: 167 IPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSER 226
+ MP L L + N+++ L+ M V G + + G E
Sbjct: 114 ---ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM------IVVELGTNPLKSSGIEN 164
Query: 227 KYFTTLYLVNLLDLSSTNLSAEIP----------------------AELTSLVHLGTLNL 264
F + ++ + ++ TN++ IP A L L +L L L
Sbjct: 165 GAFQGMKKLSYIRIADTNITT-IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 265 SHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319
S N + + N L L L+ NKL +P +A ++ + L NN+S
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 44 VPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSS 103
VP SL ++ A +DLS NN P + NL +L++S+N+L+ F
Sbjct: 33 VPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLH---SLLLSHNHLNFISSEAFVPVP 88
Query: 104 FLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL 163
L LD+S+N L L+ L L+L NN++ + ++ ++ L L N +
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Query: 164 SGNIPAWI---GASMPGLLHILDLSHNDL 189
S P + G +P L+ +LDLS N L
Sbjct: 149 S-RFPVELIKDGNKLPKLM-LLDLSSNKL 175
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 171 IGASMPGLLHILDLSHNDLSG----FIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSER 226
+ S+P +LDLSHN+LS + P R+ NL + + L ++ +
Sbjct: 33 VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS-------HNHLNFISSEA-- 83
Query: 227 KYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETL 286
F + + LDLSS +L + L L L L +NH+V + L+ L
Sbjct: 84 --FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141
Query: 287 DLSKNKLS 294
LS+N++S
Sbjct: 142 YLSQNQIS 149
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 21/222 (9%)
Query: 77 NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRN 136
NLK L TL++ NN +S P F+ L L +S N L +PE + +TL+ L +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHE 130
Query: 137 NYLSGELPLSLKNCTFMESLDLGDNNL-SGNIP--AWIGASMPGLLHILDLSHNDLSGFI 193
N ++ M ++LG N L S I A+ G + I D + + +
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL 190
Query: 194 PPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAEL 253
PP +L+++ ++ K +TK + L + L LS ++SA L
Sbjct: 191 PP---SLTELHLDGNK----------ITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 254 TSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG 295
+ HL L+L++N LV K+P + + ++++ + L N +S
Sbjct: 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 90/235 (38%), Gaps = 35/235 (14%)
Query: 107 ILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGN 166
+LD+ NN ++ +L+ L L+L NN +S P + +E L L N L
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-- 113
Query: 167 IPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSER 226
+ MP L L + N+++ L+ M V G + + G E
Sbjct: 114 ---ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM------IVVELGTNPLKSSGIEN 164
Query: 227 KYFTTLYLVNLLDLSSTNLSAEIP----------------------AELTSLVHLGTLNL 264
F + ++ + ++ TN++ IP A L L +L L L
Sbjct: 165 GAFQGMKKLSYIRIADTNITT-IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 265 SHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319
S N + + N L L L+ NKL +P +A ++ + L NN+S
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 134/322 (41%), Gaps = 15/322 (4%)
Query: 5 LRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFE 64
+ ++ L K R SD F + + ELD+ L G G N + L++N+F+
Sbjct: 255 VESINLQKHRFSDLSSSTFRCFT-RVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFD 313
Query: 65 GRLPLCIPKSIGNLKQLITLVISNNNLSGEI-PLLFSNSSFLYILDMSNNSLSGS--IPE 121
LC + + L L I N ++ L LD+S++ + S
Sbjct: 314 ---QLCQINA-ASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNL 369
Query: 122 SIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHI 181
+ +LR L++L L N G + K C +E LD+ +L P ++ LL +
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNL-HLLRV 428
Query: 182 LDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLS 241
L+LSH L + L D++ + +G S+ + + +L LS
Sbjct: 429 LNLSHCLLDTSNQHLLAGLQDLR-----HLNLQGNSFQDGSISKTNLLQMVGSLEILILS 483
Query: 242 STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM 301
S NL + L ++ L+LSHN L G + + + + L L+++ N + P +
Sbjct: 484 SCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLL 542
Query: 302 ASLIFMNHLNLSYNNLSGEIPN 323
+L + +NLS+N L N
Sbjct: 543 PALSQQSIINLSHNPLDCTCSN 564
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 76 GNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLR---TLRFL 132
G L L TL +S+N L +PLL L +LD+S N L+ S+P +G+LR L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPA 169
L+ N L P L +E L L +NNL+ +PA
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFP--ATVDLSSNNF 63
+ + LN +I D +P + LD+++N LR S F+FP +DLS
Sbjct: 13 QCMELNFYKIPDNLP-------FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEI 64
Query: 64 EGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESI 123
+ + +L L TL+++ N + FS S L L +L+ I
Sbjct: 65 QT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120
Query: 124 GSLRTLRFLVLRNNYL-SGELPLSLKNCTFMESLDLGDNNLSG 165
G L+TL+ L + +N + S +LP N T +E LDL N +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 229 FTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVG-KIPEEIGNFEWLETLD 287
F+ L + L TNL++ + L L LN++HN + K+PE N LE LD
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 288 LSKNKLSG 295
LS NK+
Sbjct: 156 LSSNKIQS 163
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 76 GNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLR---TLRFL 132
G L L TL +S+N L +PLL L +LD+S N L+ S+P +G+LR L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPA 169
L+ N L P L +E L L +NNL+ +PA
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 165
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 76 GNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLR---TLRFL 132
G L L TL +S+N L +PLL L +LD+S N L+ S+P +G+LR L+ L
Sbjct: 75 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 130
Query: 133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPA 169
L+ N L P L +E L L +NNL+ +PA
Sbjct: 131 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 166
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFP--ATVDLSSNNF 63
+ + LN +I D +P + LD+++N LR S F+FP +DLS
Sbjct: 15 QCMELNFYKIPDNLP-------FSTKNLDLSWNPLRHLGSYSF-FSFPELQVLDLSRCEI 66
Query: 64 EGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESI 123
+ + +L L TL+++ N + FS S L L +L+ I
Sbjct: 67 QT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 122
Query: 124 GSLRTLRFLVLRNNYL-SGELPLSLKNCTFMESLDLGDNNLSG 165
G L+TL+ L + +N + S +LP N T +E LDL N +
Sbjct: 123 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 229 FTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVG-KIPEEIGNFEWLETLD 287
F+ L + L TNL++ + L L LN++HN + K+PE N LE LD
Sbjct: 98 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 288 LSKNKLSG 295
LS NK+
Sbjct: 158 LSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFP--ATVDLSSNNF 63
+ + LN +I D +P + LD+++N LR S F+FP +DLS
Sbjct: 14 QCMELNFYKIPDNLP-------FSTKNLDLSWNPLRHLGSYSF-FSFPELQVLDLSRCEI 65
Query: 64 EGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESI 123
+ + +L L TL+++ N + FS S L L +L+ I
Sbjct: 66 QT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 121
Query: 124 GSLRTLRFLVLRNNYL-SGELPLSLKNCTFMESLDLGDNNLSG 165
G L+TL+ L + +N + S +LP N T +E LDL N +
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 229 FTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVG-KIPEEIGNFEWLETLD 287
F+ L + L TNL++ + L L LN++HN + K+PE N LE LD
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 288 LSKNKLSG 295
LS NK+
Sbjct: 157 LSSNKIQS 164
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 76 GNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLR---TLRFL 132
G L L TL +S+N L +PLL L +LD+S N L+ S+P +G+LR L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPA 169
L+ N L P L +E L L +NNL+ +PA
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 165
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 76 GNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLR---TLRFL 132
G L L TL +S+N L +PLL L +LD+S N L+ S+P +G+LR L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPA 169
L+ N L P L +E L L +NNL+ +PA
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 165
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFP--ATVDLSSNNF 63
+ + LN +I D +P + LD+++N LR S F+FP +DLS
Sbjct: 15 QCMELNFYKIPDNLP-------FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEI 66
Query: 64 EGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESI 123
+ + +L L TL+++ N + FS S L L +L+ I
Sbjct: 67 QT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPI 122
Query: 124 GSLRTLRFLVLRNNYL-SGELPLSLKNCTFMESLDLGDNNLSG 165
G L+TL+ L + +N + S +LP N T +E LDL N +
Sbjct: 123 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 243 TNLSAEIPAELTSLVHLGTLNLSHNHLVG-KIPEEIGNFEWLETLDLSKNKLSG 295
TNL++ + L L LN++HN + K+PE N LE LDLS NK+
Sbjct: 112 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 81 LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLS 140
+T + N N E+P N S L +LD+S+N L+ S+P +GS L++ +N ++
Sbjct: 248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
Query: 141 GELPLSLKNCTFMESLDLGDNNLSGNI 167
LP N ++ L + N L
Sbjct: 307 T-LPWEFGNLCNLQFLGVEGNPLEKQF 332
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 248 EIPAELTSLVHLGTLNLSHNHLVGKIPEEIGN 279
E+PAE+ +L +L L+LSHN L +P E+G+
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGS 291
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 15/159 (9%)
Query: 10 LNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFP--ATVDLSSNNFEGRL 67
LN +I D +P + LD+++N LR S F+FP +DLS +
Sbjct: 18 LNFYKIPDNLP-------FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQT-- 67
Query: 68 PLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLR 127
+ +L L TL+++ N + FS S L L +L+ IG L+
Sbjct: 68 --IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 125
Query: 128 TLRFLVLRNNYL-SGELPLSLKNCTFMESLDLGDNNLSG 165
TL+ L + +N + S +LP N T +E LDL N +
Sbjct: 126 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 229 FTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVG-KIPEEIGNFEWLETLD 287
F+ L + L TNL++ + L L LN++HN + K+PE N LE LD
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 288 LSKNKLSG 295
LS NK+
Sbjct: 157 LSSNKIQS 164
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 114/281 (40%), Gaps = 52/281 (18%)
Query: 38 NELRGRVPNSLGFNFPATVDLSSNNFEG--RLPLCIPKSIGNLKQLITLVISNNNLSGEI 95
N+L+ ++ F + T+ F LP P N+ L LV+ N+LS
Sbjct: 77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP---PHVFQNVPLLTVLVLERNDLSSLP 133
Query: 96 PLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMES 155
+F N+ L L MSNN+L ++ + +L+ L L +N L+ + LSL F
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHA- 191
Query: 156 LDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPP----------RVGNLSDMK- 204
N+S N+ + + +P + LD SHN ++ P + NL+D
Sbjct: 192 ------NVSYNLLSTLA--IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW 243
Query: 205 -------VEPPKSVQHEGRLR----VVTKGSERKYFTTLYLVNLLDLSSTNLSAE-IPAE 252
VE S ++ V + ER Y + LV L NL + IP
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL------NLYGQPIPT- 296
Query: 253 LTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKL 293
L L+LSHNHL+ + F+ LE L L N +
Sbjct: 297 ------LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330
>pdb|4HNG|A Chain A, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008
pdb|4HNH|A Chain A, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008 In Complex With Nadp
pdb|4HNH|B Chain B, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008 In Complex With Nadp
Length = 221
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 42 GRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSN 101
G++ L D+ + +L IP I + +++ + S N G++ +N
Sbjct: 15 GQIAQKLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQN-PGKLEQAVTN 73
Query: 102 SSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTF 152
+ +++ M + S SI +++ R + + LSGE P++L+ TF
Sbjct: 74 AEVVFVGAMESGSDMASIVKALSRKNIRRVIGVSMAGLSGEFPVALEKWTF 124
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 125/302 (41%), Gaps = 51/302 (16%)
Query: 38 NELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPL 97
N+L+ ++ F + T+ F + P N+ L LV+ N+LS
Sbjct: 83 NDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141
Query: 98 LFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLD 157
+F N+ L L MSNN+L ++ + +L+ L L +N L+ + LSL F
Sbjct: 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHA--- 197
Query: 158 LGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPP----------RVGNLSDMK--- 204
N+S N+ + + +P + LD SHN ++ P + NL+D
Sbjct: 198 ----NVSYNLLSTLA--IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL 251
Query: 205 -----VEPPKSVQHEGRLR----VVTKGSERKYFTTLYLVNLLDLSSTNLSAE-IPAELT 254
VE S ++ V + ER Y + LV L NL + IP
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL------NLYGQPIPT--- 302
Query: 255 SLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSY 314
L L+LSHNHL+ + F+ LE L L N + + +++ + +L LS+
Sbjct: 303 ----LKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSH 354
Query: 315 NN 316
N+
Sbjct: 355 ND 356
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFP--ATVDLSSNNF 63
+ + LN +I D +P + LD+++N LR S F+FP +DLS
Sbjct: 13 QCMELNFYKIPDNLP-------FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLS---- 60
Query: 64 EGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESI 123
+ + +L L TL+++ N + FS S L L +L+ I
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120
Query: 124 GSLRTLRFLVLRNNYL-SGELPLSLKNCTFMESLDLGDNNL 163
G L+TL+ L + +N + S +LP N T +E LDL N +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 26/191 (13%)
Query: 105 LYILDMSNNSLS--GSIPESIGSLRTLRFLVLRNNYLSGELPLS--LKNCTFMESLDLGD 160
L LD+S N LS G +S +L++L L N G + +S +E LD
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN---GVITMSSNFLGLEQLEHLDFQH 405
Query: 161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVV 220
+NL + S+ L++ LD+SH LS ++V L++
Sbjct: 406 SNLKQMSEFSVFLSLRNLIY-LDISHTHTRVAFNGIFNGLSSLEV-----------LKMA 453
Query: 221 TKGSERKY----FTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEE 276
+ + FT L + LDLS L P SL L LN++ N L +P+
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-KSVPD- 511
Query: 277 IGNFEWLETLD 287
G F+ L +L
Sbjct: 512 -GIFDRLTSLQ 521
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 243 TNLSAEIPAELTSLVHLGTLNLSHNHLVG-KIPEEIGNFEWLETLDLSKNKL 293
TNL++ + L L LN++HN + K+PE N LE LDLS NK+
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 76 GNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLR---TLRFL 132
G L L TL +S+N L +PLL L +LD+S N L+ S+P +G+LR L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPA 169
L+ N L P L +E L L +N+L+ +PA
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPA 165
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 216 RLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPE 275
RL +++G+ F L + L+L+ NL EIP LT L+ L L+LS NHL P
Sbjct: 172 RLSYISEGA----FEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPG 225
Query: 276 EIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS 318
L+ L + ++++ + +L + +NL++NNL+
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 76 GNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLR---TLRFL 132
G L L TL +S+N L +PLL L +LD+S N L+ S+P +G+LR L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPA 169
L+ N L P L +E L L +N L+ +PA
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA 165
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 76 GNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLR---TLRFL 132
G L L TL +S+N L +PLL L +LD+S N L+ S+P +G+LR L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPA 169
L+ N L P L +E L L +N L+ +PA
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA 165
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 76 GNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLR---TLRFL 132
G L L TL +S+N L +PLL L +LD+S N L+ S+P +G+LR L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPA 169
L+ N L P L +E L L +N L+ +PA
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA 165
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 28/102 (27%)
Query: 124 GSLRTLRFLVLRNNYL-----SGELPLSLKNCTFMESLDLGDN----------------- 161
G+ +L+ LVL N+L +GE+ L+LKN T SLD+ N
Sbjct: 384 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT---SLDISRNTFHPMPDSCQWPEKMRF 440
Query: 162 -NLSGNIPAWIGASMPGLLHILDLSHNDLSGF--IPPRVGNL 200
NLS + +P L +LD+S+N+L F PR+ L
Sbjct: 441 LNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQEL 482
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 28/102 (27%)
Query: 124 GSLRTLRFLVLRNNYL-----SGELPLSLKNCTFMESLDLGDN----------------- 161
G+ +L+ LVL N+L +GE+ L+LKN T SLD+ N
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT---SLDISRNTFHPMPDSCQWPEKMRF 414
Query: 162 -NLSGNIPAWIGASMPGLLHILDLSHNDLSGF--IPPRVGNL 200
NLS + +P L +LD+S+N+L F PR+ L
Sbjct: 415 LNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQEL 456
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 76 GNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLR---TLRFL 132
G L L TL +S+N L +PLL L +LD+S N L+ S+P +G+LR L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPA 169
L+ N L P L +E L L +N L+ +PA
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA 165
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 98/261 (37%), Gaps = 26/261 (9%)
Query: 78 LKQLITLVISNNNLSGEIPL-LFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRN 136
L L LV+ +NN+ P F N ++LD++ N + E + + + F +LR
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187
Query: 137 NYLS----GELPLSLKNC------TFMESLDLGDNNLSGNIP-----AWIGASMPGLLHI 181
+ ++ E L + C T + +LDL N ++ A G + L I
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL--I 245
Query: 182 LDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSE-----RKYFTTLYLVN 236
L S+N S F N D K ++ G S+ + F+ +
Sbjct: 246 LSNSYNMGSSFGHT---NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLE 302
Query: 237 LLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGS 296
L L+ ++ L HL LNLS N L N + LE LDLS N +
Sbjct: 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL 362
Query: 297 IPPSMASLIFMNHLNLSYNNL 317
S L + L L N L
Sbjct: 363 GDQSFLGLPNLKELALDTNQL 383
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 245 LSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNF-EWLETLDLSKNKLSGSIPP--SM 301
L ++PA S + L +LNL++N + +IP F E +E L + NKL IP
Sbjct: 342 LEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA 398
Query: 302 ASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEG 338
S+ + ++ SYN + G + N F L DP+ ++G
Sbjct: 399 KSVSVXSAIDFSYNEI-GSVDGKN-FDPL-DPTPFKG 432
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294
+N L+LSS +S +I A L+ L L LN S N + P + N LE LD+S NK+S
Sbjct: 131 LNRLELSSNTIS-DISA-LSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 229 FTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDL 288
F +L + +LDL + L+ A LVHL L + N L ++P I L L L
Sbjct: 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142
Query: 289 SKNKLSGSIP 298
+N+L SIP
Sbjct: 143 DQNQLK-SIP 151
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 225 ERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEE--IGNFEW 282
+++ F L + +LDL S+ + P L HL L L L + ++ N +
Sbjct: 65 DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124
Query: 283 LETLDLSKNKL-SGSIPPSMASLIFMNHLNLSYNNL 317
L LDLSKN++ S + PS L + ++ S N +
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 110 MSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDN 161
+ N +S S S R L L L +N L+G + T +E LDL DN
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDN 89
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 247 AEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIF 306
++P +L + ++ LNL+HN L + L +LD+ N +S P L
Sbjct: 17 TQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM 74
Query: 307 MNHLNLSYNNLSGEIPNTNQFQT 329
+ LNL +N LS T F T
Sbjct: 75 LKVLNLQHNELSQLSDKTFAFCT 97
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 247 AEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIF 306
++P +L + ++ LNL+HN L + L +LD+ N +S P L
Sbjct: 27 TQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM 84
Query: 307 MNHLNLSYNNLSGEIPNTNQFQT 329
+ LNL +N LS T F T
Sbjct: 85 LKVLNLQHNELSQLSDKTFAFCT 107
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 247 AEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIF 306
++P +L + ++ LNL+HN L + L +LD+ N +S P L
Sbjct: 22 TQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM 79
Query: 307 MNHLNLSYNNLSGEIPNTNQFQT 329
+ LNL +N LS T F T
Sbjct: 80 LKVLNLQHNELSQLSDKTFAFCT 102
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294
+N L+LSS +S +I A L+ L L L+ S N + P + N LE LD+S NK+S
Sbjct: 131 LNRLELSSNTIS-DISA-LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294
+N L+LSS +S +I A L+ L L L+ S N + P + N LE LD+S NK+S
Sbjct: 131 LNRLELSSNTIS-DISA-LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 47/166 (28%)
Query: 45 PNSLGF-NFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSG--EIPLLFSN 101
P+S F NF V + + F+G LK+L TL++ N L ++ L+ N
Sbjct: 352 PSSFTFLNFTQNV-FTDSVFQG---------CSTLKRLQTLILQRNGLKNFFKVALMTKN 401
Query: 102 SSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMES---LDL 158
S L LD+S NSL+ + + C + ES L+L
Sbjct: 402 MSSLETLDVSLNSLNSHAYD--------------------------RTCAWAESILVLNL 435
Query: 159 GDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMK 204
N L+G+ + +P + +LDL HN+ IP V +L ++
Sbjct: 436 SSNMLTGS----VFRCLPPKVKVLDL-HNNRIMSIPKDVTHLQALQ 476
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 33/203 (16%)
Query: 75 IGNLKQLITLVISNNNLSGEIPL-LFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLV 133
+ L L +L+ +NN +S PL + +N L SL+G+ + IG+L +L L
Sbjct: 194 LAKLTNLESLIATNNQISDITPLGILTNLDEL--------SLNGNQLKDIGTLASLTNLT 245
Query: 134 ---LRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLS 190
L NN +S PLS T + L LG N +S NI G + L L+L+ N L
Sbjct: 246 DLDLANNQISNLAPLS--GLTKLTELKLGANQIS-NISPLAGLTA---LTNLELNENQLE 299
Query: 191 GFIPPRVGNLSDM-----------KVEPPKSVQHEGRLRVV-TKGSERKYFTTLYLVNLL 238
P + NL ++ + P S+ RL K S+ L +N L
Sbjct: 300 DISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWL 357
Query: 239 DLSSTNLSAEIP-AELTSLVHLG 260
+S P A LT + LG
Sbjct: 358 SAGHNQISDLTPLANLTRITQLG 380
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 103/250 (41%), Gaps = 22/250 (8%)
Query: 71 IPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLR 130
+PK I L+ L NN++S F LY L + NN +S ++ LR L+
Sbjct: 48 VPKEISPDTTLLDL--QNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105
Query: 131 FLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDL- 189
L + N+L E+P +L + + L + DN + +P + + + ++ +++ N L
Sbjct: 106 KLYISKNHLV-EIPPNLPSS--LVELRIHDNRIR-KVPKGVFSGLRN-MNCIEMGGNPLE 160
Query: 190 -SGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAE 248
SGF P G +K+ + E +L + K +N L L + A
Sbjct: 161 NSGFEP---GAFDGLKLNYLRI--SEAKLTGIPKDLPET-------LNELHLDHNKIQAI 208
Query: 249 IPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMN 308
+L L L L HN + + L L L NKLS +P + L +
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQ 267
Query: 309 HLNLSYNNLS 318
+ L NN++
Sbjct: 268 VVYLHTNNIT 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,647,085
Number of Sequences: 62578
Number of extensions: 443034
Number of successful extensions: 1610
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1098
Number of HSP's gapped (non-prelim): 250
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)