Query 041463
Match_columns 356
No_of_seqs 201 out of 3082
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 07:21:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.4E-34 7.3E-39 286.1 21.4 338 1-346 234-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.4E-33 2.9E-38 281.8 20.4 312 2-322 117-445 (968)
3 KOG4194 Membrane glycoprotein 100.0 9E-32 2E-36 234.9 3.8 312 6-334 81-445 (873)
4 KOG4194 Membrane glycoprotein 100.0 8.8E-32 1.9E-36 235.0 2.5 322 6-334 55-398 (873)
5 KOG0444 Cytoskeletal regulator 99.9 3.7E-28 8.1E-33 214.4 -5.3 337 2-350 31-383 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 6E-28 1.3E-32 213.1 -4.5 328 3-353 7-340 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 1.6E-26 3.5E-31 193.8 -7.1 310 2-334 182-534 (565)
8 PLN03210 Resistant to P. syrin 99.9 2.3E-21 4.9E-26 195.0 23.0 316 1-334 556-899 (1153)
9 KOG4237 Extracellular matrix p 99.9 1.2E-24 2.7E-29 182.1 -3.7 293 28-353 67-364 (498)
10 KOG0472 Leucine-rich repeat pr 99.9 2E-25 4.3E-30 187.3 -9.8 263 28-340 45-308 (565)
11 PLN03210 Resistant to P. syrin 99.8 7.9E-20 1.7E-24 183.9 21.3 290 4-319 590-907 (1153)
12 KOG0618 Serine/threonine phosp 99.8 6.8E-23 1.5E-27 188.4 -3.3 227 103-339 241-486 (1081)
13 PRK15387 E3 ubiquitin-protein 99.8 1E-19 2.2E-24 171.5 16.1 261 5-323 203-463 (788)
14 PRK15370 E3 ubiquitin-protein 99.8 1.5E-18 3.3E-23 164.4 12.1 246 4-318 179-428 (754)
15 cd00116 LRR_RI Leucine-rich re 99.8 1.1E-20 2.4E-25 165.9 -3.4 157 7-164 2-178 (319)
16 KOG4237 Extracellular matrix p 99.8 5.9E-21 1.3E-25 160.3 -6.5 290 4-319 68-360 (498)
17 KOG0618 Serine/threonine phosp 99.7 6.7E-20 1.5E-24 168.9 -3.9 269 3-318 219-489 (1081)
18 PRK15370 E3 ubiquitin-protein 99.7 3.7E-17 7.9E-22 155.1 11.0 227 28-321 178-404 (754)
19 PRK15387 E3 ubiquitin-protein 99.7 1.5E-16 3.2E-21 150.4 14.5 251 28-334 201-451 (788)
20 cd00116 LRR_RI Leucine-rich re 99.7 7.2E-19 1.6E-23 154.4 -4.0 261 32-320 2-293 (319)
21 KOG0617 Ras suppressor protein 99.7 8.6E-19 1.9E-23 131.2 -3.9 163 28-201 33-196 (264)
22 KOG0617 Ras suppressor protein 99.6 3E-18 6.5E-23 128.3 -4.3 165 101-328 31-196 (264)
23 KOG1909 Ran GTPase-activating 99.3 1.4E-13 3.1E-18 114.6 -3.0 188 2-190 29-254 (382)
24 PLN03150 hypothetical protein; 99.3 1.3E-11 2.9E-16 116.8 8.5 117 234-351 419-537 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 1E-13 2.2E-18 122.4 -5.4 170 106-318 78-247 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 1.3E-12 2.9E-17 115.5 -2.2 212 33-292 55-271 (722)
27 KOG1909 Ran GTPase-activating 99.2 1.8E-13 3.8E-18 114.1 -8.4 92 227-318 207-311 (382)
28 PF14580 LRR_9: Leucine-rich r 99.2 2.9E-11 6.2E-16 94.4 4.1 122 29-157 20-146 (175)
29 KOG3207 Beta-tubulin folding c 99.1 6.9E-12 1.5E-16 107.6 0.0 209 49-294 119-339 (505)
30 KOG4658 Apoptotic ATPase [Sign 99.1 2.7E-11 5.9E-16 117.4 3.5 288 28-331 523-822 (889)
31 KOG1259 Nischarin, modulator o 99.1 3.1E-11 6.8E-16 99.0 3.0 60 102-164 283-342 (490)
32 COG4886 Leucine-rich repeat (L 99.1 1E-10 2.2E-15 105.9 6.6 79 238-320 214-292 (394)
33 PF14580 LRR_9: Leucine-rich r 99.1 4.3E-11 9.3E-16 93.4 3.0 134 43-185 11-148 (175)
34 KOG1259 Nischarin, modulator o 99.1 3.3E-11 7.1E-16 98.9 1.6 130 151-320 284-414 (490)
35 KOG3207 Beta-tubulin folding c 99.1 1.4E-11 3.1E-16 105.7 -0.6 211 77-321 119-342 (505)
36 COG4886 Leucine-rich repeat (L 99.1 3.4E-10 7.3E-15 102.4 7.8 197 55-298 97-294 (394)
37 PF13855 LRR_8: Leucine rich r 99.1 1.4E-10 2.9E-15 74.7 3.5 61 257-317 1-61 (61)
38 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.3E-14 70.5 3.6 61 233-293 1-61 (61)
39 PLN03150 hypothetical protein; 98.9 3.8E-09 8.3E-14 100.2 8.4 98 226-323 435-533 (623)
40 KOG4658 Apoptotic ATPase [Sign 98.9 9.7E-10 2.1E-14 106.8 3.0 268 43-331 515-797 (889)
41 KOG1859 Leucine-rich repeat pr 98.7 2.1E-10 4.6E-15 104.6 -6.0 174 3-189 109-291 (1096)
42 KOG2120 SCF ubiquitin ligase, 98.7 1.1E-10 2.3E-15 95.7 -7.5 181 81-292 187-374 (419)
43 KOG0531 Protein phosphatase 1, 98.7 3.7E-09 8E-14 95.9 -0.0 127 28-164 72-199 (414)
44 KOG1859 Leucine-rich repeat pr 98.6 3.2E-10 6.9E-15 103.5 -8.0 111 230-348 184-297 (1096)
45 KOG0531 Protein phosphatase 1, 98.6 3.5E-09 7.7E-14 96.0 -1.4 245 49-322 70-322 (414)
46 KOG2120 SCF ubiquitin ligase, 98.5 8.2E-10 1.8E-14 90.7 -7.9 214 104-353 186-409 (419)
47 COG5238 RNA1 Ran GTPase-activa 98.4 3.9E-08 8.4E-13 80.0 -0.4 187 2-190 29-255 (388)
48 KOG1644 U2-associated snRNP A' 98.4 8E-07 1.7E-11 69.3 6.2 129 29-163 20-152 (233)
49 KOG2982 Uncharacterized conser 98.4 2.2E-08 4.7E-13 82.5 -3.1 85 78-162 70-157 (418)
50 KOG4341 F-box protein containi 98.4 2.8E-09 6E-14 91.4 -8.8 277 5-316 140-437 (483)
51 PF12799 LRR_4: Leucine Rich r 98.3 4.8E-07 1E-11 53.2 2.2 37 281-318 1-37 (44)
52 COG5238 RNA1 Ran GTPase-activa 98.2 6.5E-08 1.4E-12 78.7 -4.1 90 230-319 211-317 (388)
53 KOG2982 Uncharacterized conser 98.2 5.6E-07 1.2E-11 74.3 1.2 110 78-189 44-158 (418)
54 KOG4341 F-box protein containi 98.2 1.5E-08 3.4E-13 87.0 -8.2 277 1-310 162-457 (483)
55 KOG4579 Leucine-rich repeat (L 98.0 3.5E-07 7.6E-12 66.7 -2.2 114 231-354 51-165 (177)
56 PF12799 LRR_4: Leucine Rich r 98.0 3.3E-06 7.1E-11 49.6 2.2 37 257-294 1-37 (44)
57 KOG4579 Leucine-rich repeat (L 98.0 3.1E-07 6.7E-12 67.0 -3.4 98 235-334 29-129 (177)
58 KOG3665 ZYG-1-like serine/thre 97.9 2.8E-06 6E-11 81.0 0.7 59 77-137 171-230 (699)
59 KOG3665 ZYG-1-like serine/thre 97.8 4E-06 8.7E-11 79.9 -1.1 135 50-190 121-263 (699)
60 PRK15386 type III secretion pr 97.7 0.00029 6.2E-09 62.5 10.0 12 128-139 157-168 (426)
61 PRK15386 type III secretion pr 97.7 0.00021 4.6E-09 63.3 8.8 15 102-116 51-65 (426)
62 KOG1644 U2-associated snRNP A' 97.7 5.3E-05 1.2E-09 59.4 4.4 105 28-138 42-151 (233)
63 KOG2739 Leucine-rich acidic nu 97.1 0.00012 2.7E-09 59.7 0.0 105 50-160 42-152 (260)
64 KOG2123 Uncharacterized conser 96.9 2.5E-05 5.3E-10 64.3 -5.8 81 28-115 19-100 (388)
65 PF13306 LRR_5: Leucine rich r 96.8 0.0049 1.1E-07 45.9 6.8 99 28-135 12-111 (129)
66 PF13306 LRR_5: Leucine rich r 96.8 0.0045 9.7E-08 46.2 6.6 83 75-160 8-90 (129)
67 KOG2739 Leucine-rich acidic nu 96.8 0.00065 1.4E-08 55.6 2.0 64 229-294 61-129 (260)
68 KOG1947 Leucine rich repeat pr 96.8 0.0001 2.2E-09 68.6 -3.3 110 78-188 187-306 (482)
69 KOG3864 Uncharacterized conser 96.5 0.00024 5.1E-09 55.8 -2.6 82 233-314 101-185 (221)
70 KOG1947 Leucine rich repeat pr 96.4 0.00021 4.5E-09 66.5 -4.2 62 101-162 241-306 (482)
71 KOG2123 Uncharacterized conser 96.4 0.00014 3.1E-09 59.9 -4.5 83 234-320 20-103 (388)
72 PF00560 LRR_1: Leucine Rich R 95.9 0.0034 7.3E-08 30.6 0.8 12 283-294 2-13 (22)
73 PF00560 LRR_1: Leucine Rich R 94.6 0.02 4.3E-07 27.8 1.2 18 306-323 1-18 (22)
74 PF13504 LRR_7: Leucine rich r 94.4 0.026 5.6E-07 25.4 1.2 11 283-293 3-13 (17)
75 KOG4308 LRR-containing protein 93.0 0.00034 7.4E-09 64.1 -12.2 185 5-190 89-303 (478)
76 smart00370 LRR Leucine-rich re 92.9 0.081 1.7E-06 26.8 1.7 16 281-296 2-17 (26)
77 smart00369 LRR_TYP Leucine-ric 92.9 0.081 1.7E-06 26.8 1.7 16 281-296 2-17 (26)
78 KOG3864 Uncharacterized conser 91.9 0.022 4.8E-07 45.1 -1.8 81 81-161 103-186 (221)
79 KOG0473 Leucine-rich repeat pr 91.7 0.0036 7.8E-08 50.5 -6.4 86 230-318 39-124 (326)
80 PF13516 LRR_6: Leucine Rich r 91.4 0.061 1.3E-06 26.6 0.1 19 2-20 1-19 (24)
81 KOG4308 LRR-containing protein 91.0 0.0017 3.7E-08 59.6 -10.2 168 3-170 115-309 (478)
82 KOG0473 Leucine-rich repeat pr 90.2 0.011 2.3E-07 47.9 -5.0 60 232-293 64-123 (326)
83 KOG4242 Predicted myosin-I-bin 83.3 4.4 9.5E-05 36.9 6.6 13 179-191 356-368 (553)
84 smart00368 LRR_RI Leucine rich 79.1 0.98 2.1E-05 23.3 0.8 16 3-18 2-17 (28)
85 smart00365 LRR_SD22 Leucine-ri 78.4 1.9 4.2E-05 21.8 1.7 14 281-294 2-15 (26)
86 smart00364 LRR_BAC Leucine-ric 77.2 1.8 3.9E-05 21.9 1.3 16 282-298 3-18 (26)
87 smart00367 LRR_CC Leucine-rich 74.6 2.1 4.4E-05 21.5 1.2 15 281-295 2-17 (26)
88 KOG3763 mRNA export factor TAP 74.1 1.3 2.8E-05 40.9 0.6 66 230-296 215-285 (585)
89 KOG3763 mRNA export factor TAP 67.7 2.5 5.4E-05 39.2 1.0 34 28-61 218-254 (585)
90 TIGR00864 PCC polycystin catio 38.9 18 0.00038 40.8 1.7 32 263-294 1-32 (2740)
91 PF08119 Toxin_31: Scorpion ac 33.9 24 0.00052 18.4 0.9 13 340-352 24-36 (37)
92 PF15322 PMSI1: Protein missin 31.4 18 0.00038 30.4 0.3 9 345-353 185-193 (311)
93 KOG4242 Predicted myosin-I-bin 24.2 98 0.0021 28.7 3.6 66 103-170 165-233 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.4e-34 Score=286.14 Aligned_cols=338 Identities=33% Similarity=0.516 Sum_probs=217.8
Q ss_pred CcccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcc
Q 041463 1 NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLK 79 (356)
Q Consensus 1 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~ 79 (356)
++++|++|++++|.+.+..|..+.++ ++|++|++++|.+.+..+..+ .+++|++|++++|.+.+.+ |..+..++
T Consensus 234 ~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~ 308 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGPIPSSLGNL-KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI----PELVIQLQ 308 (968)
T ss_pred cCCCCCEEECcCceeccccChhHhCC-CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC----ChhHcCCC
Confidence 35677778888777777777777766 677777777777766655555 4677777777777766533 34455566
Q ss_pred cccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCC--------
Q 041463 80 QLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCT-------- 151 (356)
Q Consensus 80 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~-------- 151 (356)
+|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..++
T Consensus 309 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 388 (968)
T PLN00113 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388 (968)
T ss_pred CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECc
Confidence 666666666666655555666666666666666666555555555555666666665555544444444444
Q ss_pred ----------------CCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCC
Q 041463 152 ----------------FMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEG 215 (356)
Q Consensus 152 ----------------~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~ 215 (356)
+|+.|++++|.+.+..|..+.. ++. ++.+++++|.+.+..+..+..+++|+.+....+...+
T Consensus 389 ~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK-LPL-VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466 (968)
T ss_pred CCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc-CCC-CCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence 4444444444444333333222 221 4555555555444444444444444443332221111
Q ss_pred Ce---------eee------ecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCC
Q 041463 216 RL---------RVV------TKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNF 280 (356)
Q Consensus 216 ~~---------~~~------~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~ 280 (356)
.. ... ..+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++.+|..+..+
T Consensus 467 ~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 546 (968)
T PLN00113 467 GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546 (968)
T ss_pred ecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence 10 000 012223445667788888888888887788888888888888888888888888888888
Q ss_pred CCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCccccccCccccCCC
Q 041463 281 EWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDP 346 (356)
Q Consensus 281 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 346 (356)
++|+.|++++|++.+.+|..+.+++.|+.+++++|++.+.+|....+..+.... +.+|+..||.+
T Consensus 547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~-~~~n~~lc~~~ 611 (968)
T PLN00113 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASA-VAGNIDLCGGD 611 (968)
T ss_pred ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhh-hcCCccccCCc
Confidence 888888888888888888888888888888998888888888887777776665 77888888754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.4e-33 Score=281.80 Aligned_cols=312 Identities=36% Similarity=0.500 Sum_probs=142.9
Q ss_pred cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ 80 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 80 (356)
+++|++|++++|.+++.+|.. .+ ++|++|++++|.+.+..+..+ .+++|++|++++|.+.+. +|..+..+++
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~--~l-~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~ 189 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRG--SI-PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK----IPNSLTNLTS 189 (968)
T ss_pred CCCCCEEECcCCccccccCcc--cc-CCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc----CChhhhhCcC
Confidence 455666666666665544431 12 455555555555554444433 355555555555554432 2234444555
Q ss_pred ccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecC
Q 041463 81 LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGD 160 (356)
Q Consensus 81 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 160 (356)
|++|++++|.+.+..|..+..+++|++|++++|.+....|..+..+++|++|++++|.+++..|..+..+++|+.|++++
T Consensus 190 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 269 (968)
T PLN00113 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269 (968)
T ss_pred CCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcC
Confidence 55555555555444444455555555555555554444444444555555555555554444444444455555555555
Q ss_pred CcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCe-------------eee---ecCC
Q 041463 161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRL-------------RVV---TKGS 224 (356)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~-------------~~~---~~~~ 224 (356)
|.+.+..|..+.. +.. |+.|++++|.+.+.+|..+..+++|+.+........+.. ... ..+.
T Consensus 270 n~l~~~~p~~l~~-l~~-L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 270 NKLSGPIPPSIFS-LQK-LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred CeeeccCchhHhh-ccC-cCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc
Confidence 4444334333322 111 444444444444444444444444333222111110000 000 0011
Q ss_pred ccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCc
Q 041463 225 ERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASL 304 (356)
Q Consensus 225 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l 304 (356)
.+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+
T Consensus 348 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l 427 (968)
T PLN00113 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427 (968)
T ss_pred CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC
Confidence 22233444555555555555544444444444444444444444444444444444555555555555544444444444
Q ss_pred CCCCEEEcccCcccccCC
Q 041463 305 IFMNHLNLSYNNLSGEIP 322 (356)
Q Consensus 305 ~~L~~L~l~~n~~~~~~~ 322 (356)
+.|+.|++++|.+++.+|
T Consensus 428 ~~L~~L~Ls~N~l~~~~~ 445 (968)
T PLN00113 428 PLVYFLDISNNNLQGRIN 445 (968)
T ss_pred CCCCEEECcCCcccCccC
Confidence 444444444444444433
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=9e-32 Score=234.91 Aligned_cols=312 Identities=21% Similarity=0.236 Sum_probs=158.5
Q ss_pred eEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCC-CCCCcEEecCCCcccCcCCCCCCcccCCcccccEE
Q 041463 6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLG-FNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITL 84 (356)
Q Consensus 6 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L 84 (356)
++|++++|.+.+..+..|.++ ++|+++++.+|.++ .+|.+.+ ..+|+.|+|..|.|... -.+.+..++.|+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl-~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv----~se~L~~l~alrsl 154 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNL-PNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSV----TSEELSALPALRSL 154 (873)
T ss_pred eeeeccccccccCcHHHHhcC-Ccceeeeeccchhh-hcccccccccceeEEeeeccccccc----cHHHHHhHhhhhhh
Confidence 457777777766666656666 67777777777666 3444443 33455555555555421 12334444444444
Q ss_pred ecccc------------------------cccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccc
Q 041463 85 VISNN------------------------NLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLS 140 (356)
Q Consensus 85 ~l~~~------------------------~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 140 (356)
|++.| .|+......|..+.+|..|.++.|+++...+..|.++++|+.|++..|.+.
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 44444 444344444444444444444444444333444444444444444444443
Q ss_pred cccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeee
Q 041463 141 GELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVV 220 (356)
Q Consensus 141 ~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ 220 (356)
....-.|.++++|+.|.+..|.+. .+.+..+..+.+ +++|++..|++...-..++..+++|+.+.......
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~k-me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI------- 305 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEK-MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI------- 305 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecc-cceeecccchhhhhhcccccccchhhhhccchhhh-------
Confidence 111223344444444444444443 233333333333 66666666666544445555566555433322111
Q ss_pred ecCCccccccccccccEEeecCCcccccCchhhh------------------------cccccCeEEccCCcCcCCC---
Q 041463 221 TKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELT------------------------SLVHLGTLNLSHNHLVGKI--- 273 (356)
Q Consensus 221 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~------------------------~~~~L~~L~L~~n~i~~~~--- 273 (356)
.......|+..++|+.|+|+.|.++...+..|. .+.+|++|+|+.|.+...+
T Consensus 306 -~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 306 -QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred -heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence 111223344455555555555555544444444 4455555555555543221
Q ss_pred CcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC-cccCcCCCcc
Q 041463 274 PEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPS 334 (356)
Q Consensus 274 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~ 334 (356)
...|.++++|+.|++.+|++..+.-..|.++++|++|||.+|.+..+-|.. ..+ .|+++.
T Consensus 385 a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv 445 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV 445 (873)
T ss_pred hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence 123455677777777777776555556777777777777777777666665 333 455544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=8.8e-32 Score=234.99 Aligned_cols=322 Identities=20% Similarity=0.174 Sum_probs=229.5
Q ss_pred eEEEcccccccccCCchHHhhc-cCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccE
Q 041463 6 RTLVLNKARISDTIPDWFWQLS-LTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT 83 (356)
Q Consensus 6 ~~L~l~~~~i~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 83 (356)
+.|+.++..+....-..+...+ +.-+.|++++|.+.......+ ++++|+++++.+|.++ .+|.......+++.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-----~IP~f~~~sghl~~ 129 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-----RIPRFGHESGHLEK 129 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-----hcccccccccceeE
Confidence 4567777776532222222222 567889999999997666655 7999999999999988 35555555678999
Q ss_pred EecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcc
Q 041463 84 LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL 163 (356)
Q Consensus 84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 163 (356)
|++.+|.|+.+..+.+..++.|+.||++.|.+..+....|..-.++++|++++|.+++..-..|..+.+|-.|.+++|.+
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI 209 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence 99999999988888899999999999999999966667788878999999999999987778899999999999999999
Q ss_pred cccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCc----cCCCeeeee------------cCCccc
Q 041463 164 SGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQ----HEGRLRVVT------------KGSERK 227 (356)
Q Consensus 164 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~----~~~~~~~~~------------~~~~~~ 227 (356)
+ .+|...++.+++ |+.|++..|.+.-.--..+..+++|+.+.+.... ..+.+.... ......
T Consensus 210 t-tLp~r~Fk~L~~-L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g 287 (873)
T KOG4194|consen 210 T-TLPQRSFKRLPK-LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG 287 (873)
T ss_pred c-ccCHHHhhhcch-hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence 8 788777776776 9999999998763323455666666553332211 111111110 111223
Q ss_pred cccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCC
Q 041463 228 YFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFM 307 (356)
Q Consensus 228 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 307 (356)
++-.++.|+.|++++|.|....+..++-.++|++|+|+.|.|+.-.+..|..+..|+.|.|++|.+...-...|..+++|
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL 367 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL 367 (873)
T ss_pred cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh
Confidence 34466778888888888877777777777888888888888875445566666666666666666665444556666666
Q ss_pred CEEEcccCcccccCCCC----cccCcCCCcc
Q 041463 308 NHLNLSYNNLSGEIPNT----NQFQTLNDPS 334 (356)
Q Consensus 308 ~~L~l~~n~~~~~~~~~----~~l~~l~~~~ 334 (356)
++|||++|.++..+.+. .++++|+.+.
T Consensus 368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLR 398 (873)
T ss_pred hhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence 66666666666655444 4556666555
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=3.7e-28 Score=214.39 Aligned_cols=337 Identities=24% Similarity=0.306 Sum_probs=209.6
Q ss_pred cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL 81 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 81 (356)
|+++++|.|...++. .+|+.++.+ .+|++|.+.+|.+.....+.-.++.|+.+.+..|++... -+|..+.++..|
T Consensus 31 Mt~~~WLkLnrt~L~-~vPeEL~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKns---GiP~diF~l~dL 105 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLE-QVPEELSRL-QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNS---GIPTDIFRLKDL 105 (1255)
T ss_pred hhheeEEEechhhhh-hChHHHHHH-hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccC---CCCchhcccccc
Confidence 566777777777776 577777776 677777777777765555555677777777777766533 245566667777
Q ss_pred cEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCC
Q 041463 82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDN 161 (356)
Q Consensus 82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 161 (356)
+.|++++|.+. ..|..+..-+++-.|++++|.|..+....|.++.-|-+|++++|++. .+|+.+..+.+|++|++++|
T Consensus 106 t~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 106 TILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred eeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCC
Confidence 77777777766 55666666667777777777776554455556666666777777666 56666666666666666666
Q ss_pred cccccCCchhhcccccceeEEEcccCccc-ccCCCCcCCCCCCcccCCCCCc------------cCCCeeeeecC--Ccc
Q 041463 162 NLSGNIPAWIGASMPGLLHILDLSHNDLS-GFIPPRVGNLSDMKVEPPKSVQ------------HEGRLRVVTKG--SER 226 (356)
Q Consensus 162 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~~~~~~~~------------~~~~~~~~~~~--~~~ 226 (356)
.+.......+-. +. +|+.|.+++.+-+ ..+|.++..+.+|......... ....+...... ...
T Consensus 184 PL~hfQLrQLPs-mt-sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~ 261 (1255)
T KOG0444|consen 184 PLNHFQLRQLPS-MT-SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELN 261 (1255)
T ss_pred hhhHHHHhcCcc-ch-hhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeee
Confidence 553111111100 11 1444444443321 2344444444433321111000 00000000000 001
Q ss_pred ccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcC-CCCcCcCCCCCccEEEccCCcccccCCccccCcC
Q 041463 227 KYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVG-KIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLI 305 (356)
Q Consensus 227 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~ 305 (356)
...+...+|+.|+++.|.++ .+|.+++.++.|+.|.+.+|+++- -+|..++.+.+|+.+..++|.+. ..|+.+..|+
T Consensus 262 ~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~ 339 (1255)
T KOG0444|consen 262 MTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCV 339 (1255)
T ss_pred ccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhH
Confidence 11233456677777777776 567777777777777777777542 36777777778888888877776 7888889999
Q ss_pred CCCEEEcccCcccccCCCCcccCcCCCccccccCccccCCCCCCC
Q 041463 306 FMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKK 350 (356)
Q Consensus 306 ~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 350 (356)
.|+.|.|++|++-+.+..+--++.|+.++ .+.|+.+-..|-.-|
T Consensus 340 kL~kL~L~~NrLiTLPeaIHlL~~l~vLD-lreNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 340 KLQKLKLDHNRLITLPEAIHLLPDLKVLD-LRENPNLVMPPKPND 383 (1255)
T ss_pred HHHHhcccccceeechhhhhhcCCcceee-ccCCcCccCCCCcch
Confidence 99999999999987777778889999999 888988776665544
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=6e-28 Score=213.13 Aligned_cols=328 Identities=26% Similarity=0.312 Sum_probs=254.4
Q ss_pred ccceEEEccccccc-ccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463 3 TELRTLVLNKARIS-DTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ 80 (356)
Q Consensus 3 ~~L~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 80 (356)
+=+|-+++++|.++ +.+|.....+ .+++.|.|....+. .+|+.+ .+.+|++|.+..|++. .+...+..+|.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qM-t~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-----~vhGELs~Lp~ 79 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQM-TQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-----SVHGELSDLPR 79 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHh-hheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-----hhhhhhccchh
Confidence 44677899999998 5689888888 89999999998887 566666 6999999999999987 45567888999
Q ss_pred ccEEecccccccc-cccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEec
Q 041463 81 LITLVISNNNLSG-EIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLG 159 (356)
Q Consensus 81 L~~L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 159 (356)
||.+.+..|.+.. -+|..+..+..|+.||+++|.+. ..|..+..-+++-.|.+++|.+..+.-..+.++..|-.||++
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence 9999999998853 36777888999999999999999 888888888999999999999984444456789999999999
Q ss_pred CCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEe
Q 041463 160 DNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLD 239 (356)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 239 (356)
+|.+. .+|..+..... |++|.+++|++.-.--..+.++++|..+.+...+.. ....+..+..+.+|..+|
T Consensus 159 ~NrLe-~LPPQ~RRL~~--LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT-------l~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 159 NNRLE-MLPPQIRRLSM--LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT-------LDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred cchhh-hcCHHHHHHhh--hhhhhcCCChhhHHHHhcCccchhhhhhhcccccch-------hhcCCCchhhhhhhhhcc
Confidence 99997 88888776544 999999999865332233344455544333322111 112345567788999999
Q ss_pred ecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463 240 LSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319 (356)
Q Consensus 240 L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 319 (356)
++.|.+. ..|..+-.+++|+.|+|++|.|+ .+.-......+|+.|+++.|+++ ..|+.+.++++|+.|.+.+|+++-
T Consensus 229 lS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 229 LSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTF 305 (1255)
T ss_pred ccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccc
Confidence 9999998 78888888999999999999998 55555566778999999999999 889999999999999999998874
Q ss_pred c-CCCC-cccCcCCCccccccCccccCCC-CCCCCCC
Q 041463 320 E-IPNT-NQFQTLNDPSIYEGNLALCGDP-LPKKCPE 353 (356)
Q Consensus 320 ~-~~~~-~~l~~l~~~~~~~~~~~~~~~~-~~~~c~~ 353 (356)
. +|+. ..+..|.++. ..+|..- -.| .-|-|++
T Consensus 306 eGiPSGIGKL~~Levf~-aanN~LE-lVPEglcRC~k 340 (1255)
T KOG0444|consen 306 EGIPSGIGKLIQLEVFH-AANNKLE-LVPEGLCRCVK 340 (1255)
T ss_pred cCCccchhhhhhhHHHH-hhccccc-cCchhhhhhHH
Confidence 3 5554 7777777665 3333222 233 4477753
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=1.6e-26 Score=193.80 Aligned_cols=310 Identities=27% Similarity=0.374 Sum_probs=190.2
Q ss_pred cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcc-cCCccc
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKS-IGNLKQ 80 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~~l~~ 80 (356)
|+.|++|+...|.++ .+|..++.+ .+|+-|+++.|++. ..|++-++..|+++.++.|.+. .+|.. ..+++.
T Consensus 182 m~~L~~ld~~~N~L~-tlP~~lg~l-~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~-----~lpae~~~~L~~ 253 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLE-TLPPELGGL-ESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIE-----MLPAEHLKHLNS 253 (565)
T ss_pred HHHHHhcccchhhhh-cCChhhcch-hhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHH-----hhHHHHhccccc
Confidence 445555555555554 455555555 55666666666655 4455555666666666666554 23332 335666
Q ss_pred ccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccc------------------
Q 041463 81 LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGE------------------ 142 (356)
Q Consensus 81 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~------------------ 142 (356)
+.+||++.|.+. ..|..+..+.+|.+||+++|.++ ..|..++++ +|++|.+.+|.+.+.
T Consensus 254 l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs 330 (565)
T KOG0472|consen 254 LLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS 330 (565)
T ss_pred ceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence 667777777666 55666666666777777777666 555566666 677777766654310
Q ss_pred --------------------cC---ccccCCCCCcEEEecCCcccccCCchhhcccc-cceeEEEcccCcccccCCCCcC
Q 041463 143 --------------------LP---LSLKNCTFMESLDLGDNNLSGNIPAWIGASMP-GLLHILDLSHNDLSGFIPPRVG 198 (356)
Q Consensus 143 --------------------~~---~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~ 198 (356)
.+ .......+.+.|++++-+++ ..|..++.... ..++..++++|++. .+|..+.
T Consensus 331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~ 408 (565)
T KOG0472|consen 331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV 408 (565)
T ss_pred hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhH
Confidence 00 01112234555666665555 44544433322 23677788888775 5666665
Q ss_pred CCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcC
Q 041463 199 NLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIG 278 (356)
Q Consensus 199 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~ 278 (356)
.+..+..+....... .+-.+..+..+++|..|+|++|.+. ..|..+..+..|+.|+++.|.+. .+|..+.
T Consensus 409 ~lkelvT~l~lsnn~--------isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y 478 (565)
T KOG0472|consen 409 ELKELVTDLVLSNNK--------ISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLY 478 (565)
T ss_pred HHHHHHHHHHhhcCc--------cccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHh
Confidence 555544322111111 1112445667888899999999887 67888888888999999999776 6777666
Q ss_pred CCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCcc
Q 041463 279 NFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPS 334 (356)
Q Consensus 279 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~ 334 (356)
....++.+-.++|++....++.+..+.+|..||+.+|.+..++|-+..+++|+++.
T Consensus 479 ~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLe 534 (565)
T KOG0472|consen 479 ELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLE 534 (565)
T ss_pred hHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEE
Confidence 66667777666677775555556677777777777777777777777777777665
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=2.3e-21 Score=194.99 Aligned_cols=316 Identities=19% Similarity=0.188 Sum_probs=199.0
Q ss_pred CcccceEEEccccc------ccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcc
Q 041463 1 NQTELRTLVLNKAR------ISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKS 74 (356)
Q Consensus 1 ~l~~L~~L~l~~~~------i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 74 (356)
+|++|+.|.+..+. +...+|..+..+.++|+.|.+.++.+. ..|..+...+|++|+++++.+. .++..
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~~~~L~~L~L~~s~l~-----~L~~~ 629 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFRPENLVKLQMQGSKLE-----KLWDG 629 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCCccCCcEEECcCcccc-----ccccc
Confidence 36778888886543 223466677766567999999998887 6677778899999999999876 35567
Q ss_pred cCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCc
Q 041463 75 IGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFME 154 (356)
Q Consensus 75 ~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 154 (356)
+..+++|+.++++++.....+|. +..+++|++|++++|......|..+.++++|++|++++|.....+|..+ .+++|+
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 78899999999998764435554 7788999999999987666788888899999999999986544667655 688999
Q ss_pred EEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCcccccccccc
Q 041463 155 SLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYL 234 (356)
Q Consensus 155 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (356)
.|++++|.....+|.. ...++.|+++++.+. .+|..+ .+++|..+....+.... +...............++
T Consensus 708 ~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~-l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 708 RLNLSGCSRLKSFPDI-----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEK-LWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred EEeCCCCCCccccccc-----cCCcCeeecCCCccc-cccccc-cccccccccccccchhh-ccccccccchhhhhcccc
Confidence 9999998654455532 234899999998876 445433 34444432222111000 000000000011112344
Q ss_pred ccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCC---------------------CCccEEEccCCcc
Q 041463 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNF---------------------EWLETLDLSKNKL 293 (356)
Q Consensus 235 L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~---------------------~~L~~L~L~~n~i 293 (356)
|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ .+ ++|+.|+|++|.+
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i 858 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI 858 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCC
Confidence 5555555554443445555555555555555543222333322 22 4566666666666
Q ss_pred cccCCccccCcCCCCEEEcccCcc-cccCCCCcccCcCCCcc
Q 041463 294 SGSIPPSMASLIFMNHLNLSYNNL-SGEIPNTNQFQTLNDPS 334 (356)
Q Consensus 294 ~~~~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~l~~l~~~~ 334 (356)
+ .+|..+..+++|+.|++++|+- ....+....++.|+.++
T Consensus 859 ~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 859 E-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred c-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 6 5666677777888888877543 33334446666666655
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=1.2e-24 Score=182.12 Aligned_cols=293 Identities=22% Similarity=0.263 Sum_probs=187.4
Q ss_pred cCCcEeeccCCccCCcCCCCCC-CCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccc-ccccccccccccCCCCC
Q 041463 28 LTLDELDVAYNELRGRVPNSLG-FNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISN-NNLSGEIPLLFSNSSFL 105 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~l~~L 105 (356)
+.-.++.|..|.|+...+.+|+ +++|+.|+|+.|.|+. +.|.+|.+++.+..|.+.+ |.|+......|.++..|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~----I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF----IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhh----cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 5677788888888877777774 7888888888887764 3457777888777766555 77776666778888888
Q ss_pred cEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc-ccCCchhhcccccceeEEEc
Q 041463 106 YILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS-GNIPAWIGASMPGLLHILDL 184 (356)
Q Consensus 106 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~~~L~~L~l 184 (356)
+.|.+..|++.-.....|..++++..|.+.+|.+....-..+..+..++.+++..|.+. +....+...... ......
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a--~~~iet 220 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA--MNPIET 220 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHh--hchhhc
Confidence 88888887777666677777888888888888776333346777777787777776632 111111111000 000011
Q ss_pred ccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccc-cEEeecCCccccc-CchhhhcccccCeE
Q 041463 185 SHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLV-NLLDLSSTNLSAE-IPAELTSLVHLGTL 262 (356)
Q Consensus 185 ~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~L~L~~~~l~~~-~~~~~~~~~~L~~L 262 (356)
++-.. ..|.. +.. .+...... ..+......+ ..+. +.+...++ ....|..+++|++|
T Consensus 221 sgarc--~~p~r------l~~---------~Ri~q~~a---~kf~c~~esl~s~~~-~~d~~d~~cP~~cf~~L~~L~~l 279 (498)
T KOG4237|consen 221 SGARC--VSPYR------LYY---------KRINQEDA---RKFLCSLESLPSRLS-SEDFPDSICPAKCFKKLPNLRKL 279 (498)
T ss_pred cccee--cchHH------HHH---------HHhcccch---hhhhhhHHhHHHhhc-cccCcCCcChHHHHhhcccceEe
Confidence 11000 00000 000 00000000 0000011111 1111 12222223 33568999999999
Q ss_pred EccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCccccccCccc
Q 041463 263 NLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLAL 342 (356)
Q Consensus 263 ~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~~~~ 342 (356)
+|++|+|+++.+.+|.++..++.|.|..|++...-..+|.++..|+.|+|.+|+|+.+.|-. |+.+.. .+.+.+
T Consensus 280 nlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a--F~~~~~----l~~l~l 353 (498)
T KOG4237|consen 280 NLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA--FQTLFS----LSTLNL 353 (498)
T ss_pred ccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc--ccccce----eeeeeh
Confidence 99999999888889999999999999999999777778999999999999999999988876 333332 234556
Q ss_pred cCCCCCCCCCC
Q 041463 343 CGDPLPKKCPE 353 (356)
Q Consensus 343 ~~~~~~~~c~~ 353 (356)
-+|||.|||.-
T Consensus 354 ~~Np~~CnC~l 364 (498)
T KOG4237|consen 354 LSNPFNCNCRL 364 (498)
T ss_pred ccCcccCccch
Confidence 78999999973
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=2e-25 Score=187.32 Aligned_cols=263 Identities=30% Similarity=0.429 Sum_probs=204.1
Q ss_pred cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463 28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI 107 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 107 (356)
-.++.+.++.|.+....++..++..+.+|++.+|+.. .+|.++..+..++.+++++|.+. ..|+.+.....|..
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-----~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~ 118 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-----QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVK 118 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhh-----hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhh
Confidence 4688999999999877777778999999999999987 56788889999999999999998 88899999999999
Q ss_pred EEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccC
Q 041463 108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHN 187 (356)
Q Consensus 108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 187 (356)
++++.|++. ..+..+..+..++.++..+|.++ ..|..+..+.++..+++.+|.+. ..|+.... +.. +++++...|
T Consensus 119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~-L~~ld~~~N 193 (565)
T KOG0472|consen 119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKR-LKHLDCNSN 193 (565)
T ss_pred hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHH-HHhcccchh
Confidence 999999998 67777888889999999999998 78999999999999999999998 55555444 433 999999888
Q ss_pred cccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCC
Q 041463 188 DLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHN 267 (356)
Q Consensus 188 ~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n 267 (356)
.++ .+|+.++.+++|.. |+|..|++. ..| .|+++..|++|.+..|
T Consensus 194 ~L~-tlP~~lg~l~~L~~--------------------------------LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N 238 (565)
T KOG0472|consen 194 LLE-TLPPELGGLESLEL--------------------------------LYLRRNKIR-FLP-EFPGCSLLKELHVGEN 238 (565)
T ss_pred hhh-cCChhhcchhhhHH--------------------------------HHhhhcccc-cCC-CCCccHHHHHHHhccc
Confidence 776 78888888877765 666666665 344 5666666667766666
Q ss_pred cCcCCCCcC-cCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCccccccCc
Q 041463 268 HLVGKIPEE-IGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNL 340 (356)
Q Consensus 268 ~i~~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~~ 340 (356)
.|. .+|.. ..+++++..||+.+|+++ +.|+.+.-+.+|..||+++|.+++.++.++.+ -|+++. ..|||
T Consensus 239 ~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~-leGNP 308 (565)
T KOG0472|consen 239 QIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLA-LEGNP 308 (565)
T ss_pred HHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehh-hcCCc
Confidence 666 44433 336666667777777766 56666666666666777777776666666666 455555 44443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=7.9e-20 Score=183.92 Aligned_cols=290 Identities=21% Similarity=0.191 Sum_probs=205.0
Q ss_pred cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccE
Q 041463 4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT 83 (356)
Q Consensus 4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 83 (356)
+||.|.+.++.+. .+|..+. . .+|++|++.++.+.........+++|+.|+++++.....+| .+..+++|+.
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f~-~-~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~ 661 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNFR-P-ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-----DLSMATNLET 661 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcCC-c-cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-----ccccCCcccE
Confidence 5888888888876 5666663 3 68889999888887443334468888999998775443333 3666888888
Q ss_pred EecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcc
Q 041463 84 LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL 163 (356)
Q Consensus 84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 163 (356)
|++.+|.....+|..+..+++|+.|++++|......|..+ ++++|++|.+++|.....+|.. ..+|+.|++++|.+
T Consensus 662 L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i 737 (1153)
T PLN03210 662 LKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI 737 (1153)
T ss_pred EEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc
Confidence 8888886555777888888888888888876444555544 6778888888887554344432 34667777777665
Q ss_pred cccCCchh----------------------------hcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCC
Q 041463 164 SGNIPAWI----------------------------GASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEG 215 (356)
Q Consensus 164 ~~~~~~~~----------------------------~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~ 215 (356)
. .+|..+ ....+..|+.|++++|.....+|..++.+++|+.+....+....
T Consensus 738 ~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 738 E-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred c-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence 4 333221 01122348888888887666788888888888886665544333
Q ss_pred CeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccc
Q 041463 216 RLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG 295 (356)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~ 295 (356)
.++. . ..+++|+.|++++|......|.. ..+|++|++++|.++ .+|.++..+++|+.|++++|.-..
T Consensus 817 ~LP~--------~-~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 817 TLPT--------G-INLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred eeCC--------C-CCccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC
Confidence 2211 1 15788999999998654444432 368999999999998 788899999999999999985444
Q ss_pred cCCccccCcCCCCEEEcccCcccc
Q 041463 296 SIPPSMASLIFMNHLNLSYNNLSG 319 (356)
Q Consensus 296 ~~~~~~~~l~~L~~L~l~~n~~~~ 319 (356)
.+|..+..+++|+.+++++|.-..
T Consensus 884 ~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 884 RVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred ccCcccccccCCCeeecCCCcccc
Confidence 677778889999999999996543
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=6.8e-23 Score=188.40 Aligned_cols=227 Identities=30% Similarity=0.385 Sum_probs=139.3
Q ss_pred CCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEE
Q 041463 103 SFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHIL 182 (356)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L 182 (356)
.+|++++++.+.+. ..|.++..+.+|+.+.+..|.++ .+|..+....+|+.|.+..|.+. .+|....... .+++|
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~--sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLK--SLRTL 315 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccc--eeeee
Confidence 46777777777777 45566677777777777777765 44555555555555555555543 3333322111 15555
Q ss_pred EcccCcccccCCCCcCCCCC--CcccCC-------------CCCccCCCeeeee---cCCccccccccccccEEeecCCc
Q 041463 183 DLSHNDLSGFIPPRVGNLSD--MKVEPP-------------KSVQHEGRLRVVT---KGSERKYFTTLYLVNLLDLSSTN 244 (356)
Q Consensus 183 ~l~~~~l~~~~~~~~~~l~~--L~~~~~-------------~~~~~~~~~~~~~---~~~~~~~~~~~~~L~~L~L~~~~ 244 (356)
++..|.+.. +|..+..... +..... ........+.... .......+.++.+|+.|+|++|+
T Consensus 316 dL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 316 DLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 555554432 2211100000 000000 0000000000000 11112234577899999999999
Q ss_pred ccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccccc-CCC
Q 041463 245 LSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGE-IPN 323 (356)
Q Consensus 245 l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~ 323 (356)
+.......+.+++.|++|+|+||.++ .+|+.+..++.|+.|...+|++. .+| .+.+++.|+.+|++.|+++.. +|.
T Consensus 395 L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh
Confidence 98666677888999999999999998 78888888999999999999998 677 688899999999999998854 444
Q ss_pred CcccCcCCCccccccC
Q 041463 324 TNQFQTLNDPSIYEGN 339 (356)
Q Consensus 324 ~~~l~~l~~~~~~~~~ 339 (356)
....+.|++++ +.||
T Consensus 472 ~~p~p~LkyLd-lSGN 486 (1081)
T KOG0618|consen 472 ALPSPNLKYLD-LSGN 486 (1081)
T ss_pred hCCCcccceee-ccCC
Confidence 44447888877 4444
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=1e-19 Score=171.50 Aligned_cols=261 Identities=26% Similarity=0.293 Sum_probs=191.6
Q ss_pred ceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEE
Q 041463 5 LRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITL 84 (356)
Q Consensus 5 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L 84 (356)
-..|+++.+.++ .+|..+. ++|+.|++.+|.++. +|. ..++|++|++++|.++. +|.. .++|+.|
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~--lp~~Lk~LdLs~N~Lts-----LP~l---p~sL~~L 267 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLTS-----LPVL---PPGLLEL 267 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC--CCCCCcEEEecCCccCc-----ccCc---cccccee
Confidence 457899999998 5777665 589999999999984 443 25899999999999882 3322 4688999
Q ss_pred ecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc
Q 041463 85 VISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS 164 (356)
Q Consensus 85 ~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 164 (356)
++.+|.+. .+|.. ..+|+.|++++|.+. ..|. .+++|++|++++|.++ .+|.. ...|+.|++++|.+.
T Consensus 268 ~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 268 SIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLT 335 (788)
T ss_pred eccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccc-cCCCC---cccccccccccCccc
Confidence 99999887 44442 367889999999988 4443 2468999999999998 44432 246888999999887
Q ss_pred ccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCc
Q 041463 165 GNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTN 244 (356)
Q Consensus 165 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 244 (356)
.+|. .+..|+.|++++|.+.. +|.....+..|.. ..... ..+ + ....+|+.|++++|.
T Consensus 336 -~LP~-----lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~L---s~N~L-~~L--------P---~l~~~L~~LdLs~N~ 393 (788)
T PRK15387 336 -SLPT-----LPSGLQELSVSDNQLAS-LPTLPSELYKLWA---YNNRL-TSL--------P---ALPSGLKELIVSGNR 393 (788)
T ss_pred -cccc-----cccccceEecCCCccCC-CCCCCcccceehh---hcccc-ccC--------c---ccccccceEEecCCc
Confidence 4553 23349999999999873 4544434433321 11110 011 0 113478999999999
Q ss_pred ccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCC
Q 041463 245 LSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPN 323 (356)
Q Consensus 245 l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 323 (356)
+.+ .|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 394 Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 394 LTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 984 4432 367999999999998 56654 357899999999999 7888899999999999999999987555
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=1.5e-18 Score=164.40 Aligned_cols=246 Identities=26% Similarity=0.422 Sum_probs=166.8
Q ss_pred cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccE
Q 041463 4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT 83 (356)
Q Consensus 4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 83 (356)
+.+.|+++++.++ .+|..+. ++++.|++++|.++.. |..+ ..+|++|++++|.++ .+ |..+ .++|+.
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~LtsL-P~~l-~~nL~~L~Ls~N~Lt-sL----P~~l--~~~L~~ 245 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP---EQITTLILDNNELKSL-PENL-QGNIKTLYANSNQLT-SI----PATL--PDTIQE 245 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCCcC-Chhh-ccCCCEEECCCCccc-cC----Chhh--hccccE
Confidence 4567888887777 4565443 5788888888888743 3322 257888888888776 33 3333 246788
Q ss_pred EecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcc
Q 041463 84 LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL 163 (356)
Q Consensus 84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 163 (356)
|++++|.+. .+|..+. .+|++|++++|.+. ..|..+. ++|++|++++|.++ .+|..+. ++|+.|++++|.+
T Consensus 246 L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~L 316 (754)
T PRK15370 246 MELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSL 316 (754)
T ss_pred EECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcc
Confidence 888888877 4555443 47888888888877 4454443 47888888888877 4454332 4677888888877
Q ss_pred cccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCC
Q 041463 164 SGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSST 243 (356)
Q Consensus 164 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 243 (356)
. .+|..+ +..|+.|++++|.+.. +|..+ .++|+.|++++|
T Consensus 317 t-~LP~~l----~~sL~~L~Ls~N~Lt~-LP~~l----------------------------------~~sL~~L~Ls~N 356 (754)
T PRK15370 317 T-ALPETL----PPGLKTLEAGENALTS-LPASL----------------------------------PPELQVLDVSKN 356 (754)
T ss_pred c-cCCccc----cccceeccccCCcccc-CChhh----------------------------------cCcccEEECCCC
Confidence 6 344332 2347888888777653 33211 135777999999
Q ss_pred cccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccc----cCcCCCCEEEcccCccc
Q 041463 244 NLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM----ASLIFMNHLNLSYNNLS 318 (356)
Q Consensus 244 ~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~l~~n~~~ 318 (356)
.+. .+|..+. +.|++|++++|.++ .+|..+. .+|+.|++++|+++ .+|..+ ..++.+..+++.+|+++
T Consensus 357 ~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 357 QIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 887 4555553 68999999999988 5666553 36899999999988 555433 34578889999999986
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=1.1e-20 Score=165.93 Aligned_cols=157 Identities=23% Similarity=0.225 Sum_probs=90.8
Q ss_pred EEEccccccccc-CCchHHhhccCCcEeeccCCccCCc----CCCCC-CCCCCcEEecCCCcccC--cCCCCCCcccCCc
Q 041463 7 TLVLNKARISDT-IPDWFWQLSLTLDELDVAYNELRGR----VPNSL-GFNFPATVDLSSNNFEG--RLPLCIPKSIGNL 78 (356)
Q Consensus 7 ~L~l~~~~i~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~-~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~l 78 (356)
+|+|..+.+++. ....+..+ .+|++|++.++.++.. ++..+ ..+.+++++++++.+.+ .....++..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l-~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKL-LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHH-hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 577788877743 33334444 7899999999887532 22222 45678888888876652 1101122345556
Q ss_pred ccccEEecccccccccccccccCCCC---CcEEEcccCcccc----cccccccCC-CCCcEEEeeccccccc----cCcc
Q 041463 79 KQLITLVISNNNLSGEIPLLFSNSSF---LYILDMSNNSLSG----SIPESIGSL-RTLRFLVLRNNYLSGE----LPLS 146 (356)
Q Consensus 79 ~~L~~L~l~~~~i~~~~~~~~~~l~~---L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~l~~~----~~~~ 146 (356)
++|+.|++++|.+....+..+..+.. |++|++++|.+.+ .....+..+ ++|+.|++++|.+++. ++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 67777777777765444444444433 7777777776652 112233344 6677777777666521 2233
Q ss_pred ccCCCCCcEEEecCCccc
Q 041463 147 LKNCTFMESLDLGDNNLS 164 (356)
Q Consensus 147 l~~l~~L~~L~l~~~~l~ 164 (356)
+..+++|++|++++|.+.
T Consensus 161 ~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 161 LRANRDLKELNLANNGIG 178 (319)
T ss_pred HHhCCCcCEEECcCCCCc
Confidence 445556666666666655
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.76 E-value=5.9e-21 Score=160.25 Aligned_cols=290 Identities=19% Similarity=0.196 Sum_probs=201.8
Q ss_pred cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCC-CcccCcCCCCCCcccCCcccc
Q 041463 4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSS-NNFEGRLPLCIPKSIGNLKQL 81 (356)
Q Consensus 4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~l~~L 81 (356)
.-+.++|+.|+|+...+.+|..+ ++|+.|+|++|.|+.+.+.+| ++..+.+|-+.+ |+|+ .+|. ..|..+..+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l-~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k---~~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTL-HRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPK---GAFGGLSSL 142 (498)
T ss_pred cceEEEeccCCcccCChhhccch-hhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhh---hHhhhHHHH
Confidence 35688999999996666666666 999999999999999999988 588877777766 8887 3332 578889999
Q ss_pred cEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCC
Q 041463 82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDN 161 (356)
Q Consensus 82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 161 (356)
+.|.+.-|.+.......|..+++|..|.+-.|.+..+.-..|..+..++.+.+..|.+.. ..+++.+..... -+
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~a-~~ 216 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDLA-MN 216 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHHh-hc
Confidence 999999999987788899999999999999999885555688889999999888776421 112222211110 01
Q ss_pred cccccCCchhhcccccceeEEEcccCcccccCCCCcCC-CCCCcccCCCCCccCCCeeeeecCCccccccccccccEEee
Q 041463 162 NLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGN-LSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL 240 (356)
Q Consensus 162 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 240 (356)
.+... ++.. .....+.+.++....+..+.. ++++.. ....-...+..-....|..+++|++|+|
T Consensus 217 ~iets---garc-----~~p~rl~~~Ri~q~~a~kf~c~~esl~s-------~~~~~d~~d~~cP~~cf~~L~~L~~lnl 281 (498)
T KOG4237|consen 217 PIETS---GARC-----VSPYRLYYKRINQEDARKFLCSLESLPS-------RLSSEDFPDSICPAKCFKKLPNLRKLNL 281 (498)
T ss_pred hhhcc---ccee-----cchHHHHHHHhcccchhhhhhhHHhHHH-------hhccccCcCCcChHHHHhhcccceEecc
Confidence 10000 0000 111111111111110000000 000000 0000000011112234788999999999
Q ss_pred cCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463 241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319 (356)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 319 (356)
++|.++.+...+|.+...+++|.|..|++.......|.++..|+.|+|.+|+|+...|..|..+..|.+|++-.|++..
T Consensus 282 snN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 282 SNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred CCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 9999999999999999999999999999985555688999999999999999998889999999999999999888864
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=6.7e-20 Score=168.95 Aligned_cols=269 Identities=25% Similarity=0.318 Sum_probs=186.4
Q ss_pred ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463 3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL 81 (356)
Q Consensus 3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 81 (356)
++++.|+.++|.++...+. +.. .+|++++++++.++. +|+.+ .+.+|+.++...|.++ .+|..+.....|
T Consensus 219 ~~l~~L~a~~n~l~~~~~~-p~p--~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-----~lp~ri~~~~~L 289 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH-PVP--LNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-----ALPLRISRITSL 289 (1081)
T ss_pred cchheeeeccCcceeeccc-ccc--ccceeeecchhhhhc-chHHHHhcccceEecccchhHH-----hhHHHHhhhhhH
Confidence 5678888888888733322 222 578999999998884 44666 5899999999999886 456777788889
Q ss_pred cEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCC-CCcEEEeeccccccccCccccCCCCCcEEEecC
Q 041463 82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLR-TLRFLVLRNNYLSGELPLSLKNCTFMESLDLGD 160 (356)
Q Consensus 82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 160 (356)
+.|.+..|.+. .+|......+.|++|++..|.+....+..+.-.. .++.+..+.+++.......=...+.|+.|++.+
T Consensus 290 ~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 290 VSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN 368 (1081)
T ss_pred HHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence 99999999887 6677777788999999999988743333333222 366677777776522222223456788888888
Q ss_pred CcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEee
Q 041463 161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL 240 (356)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 240 (356)
|.+++.....+..... |+.|++++|++....... +.+++.|+.|+|
T Consensus 369 N~Ltd~c~p~l~~~~h--LKVLhLsyNrL~~fpas~--------------------------------~~kle~LeeL~L 414 (1081)
T KOG0618|consen 369 NHLTDSCFPVLVNFKH--LKVLHLSYNRLNSFPASK--------------------------------LRKLEELEELNL 414 (1081)
T ss_pred Ccccccchhhhccccc--eeeeeecccccccCCHHH--------------------------------HhchHHhHHHhc
Confidence 8887665555444332 888888888776332222 334455666888
Q ss_pred cCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccc
Q 041463 241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS 318 (356)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 318 (356)
+||+++ .+|..+..+..|++|...+|.+. ..| .+..++.|+.+|++.|+++.........-++|++||+++|.-.
T Consensus 415 SGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 415 SGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred ccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 888887 56677777888888888888887 677 6677888888888888887442222222278888888888753
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=3.7e-17 Score=155.11 Aligned_cols=227 Identities=26% Similarity=0.406 Sum_probs=155.8
Q ss_pred cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463 28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI 107 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 107 (356)
.+..+|++.++.++. +|..+ .+.|+.|++++|.++ . +|..+ .++|++|++++|.+. .+|..+ ..+|+.
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I-p~~L~~L~Ls~N~Lt-s----LP~~l--~~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~ 245 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI-PEQITTLILDNNELK-S----LPENL--QGNIKTLYANSNQLT-SIPATL--PDTIQE 245 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc-ccCCcEEEecCCCCC-c----CChhh--ccCCCEEECCCCccc-cCChhh--hccccE
Confidence 456778888877773 34322 257888888888776 2 33333 257888888888776 445443 246888
Q ss_pred EEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccC
Q 041463 108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHN 187 (356)
Q Consensus 108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 187 (356)
|++++|.+. ..|..+. .+|+.|++++|.++ .+|..+. ++|+.|++++|.+. .+|..+ +..++.|++++|
T Consensus 246 L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l----p~sL~~L~Ls~N 314 (754)
T PRK15370 246 MELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL----PSGITHLNVQSN 314 (754)
T ss_pred EECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc----hhhHHHHHhcCC
Confidence 888888877 4454443 46888888888877 4565443 47888888888776 444332 223777777777
Q ss_pred cccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCC
Q 041463 188 DLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHN 267 (356)
Q Consensus 188 ~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n 267 (356)
.+.. +|..+ .++|+.|++++|.++. +|..+. ++|+.|++++|
T Consensus 315 ~Lt~-LP~~l----------------------------------~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N 356 (754)
T PRK15370 315 SLTA-LPETL----------------------------------PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKN 356 (754)
T ss_pred cccc-CCccc----------------------------------cccceeccccCCcccc-CChhhc--CcccEEECCCC
Confidence 6652 22111 1357779999999885 555553 68999999999
Q ss_pred cCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccC
Q 041463 268 HLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEI 321 (356)
Q Consensus 268 ~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 321 (356)
.+. .+|..+. ++|+.|++++|+++ .+|..+. ..|+.|++++|++...+
T Consensus 357 ~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP 404 (754)
T PRK15370 357 QIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLP 404 (754)
T ss_pred CCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCc
Confidence 998 6776553 68999999999999 5565443 36999999999998543
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=1.5e-16 Score=150.35 Aligned_cols=251 Identities=25% Similarity=0.263 Sum_probs=174.9
Q ss_pred cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463 28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI 107 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 107 (356)
..-..|+++.+.++ .+|..+. .+|+.|++.+|.++. +|. ..++|++|++++|.++ .+|.. .++|+.
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~-~~L~~L~L~~N~Lt~-----LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~ 266 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLE 266 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh-cCCCEEEccCCcCCC-----CCC---CCCCCcEEEecCCccC-cccCc---ccccce
Confidence 45678999999998 4555443 589999999999882 333 2578999999999998 44542 468999
Q ss_pred EEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccC
Q 041463 108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHN 187 (356)
Q Consensus 108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 187 (356)
|++++|.+. ..|.. +.+|+.|.+++|.++ .+|. ..++|+.|++++|.+. .+|.. +..++.|++++|
T Consensus 267 L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~l-----p~~L~~L~Ls~N 332 (788)
T PRK15387 267 LSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPAL-----PSELCKLWAYNN 332 (788)
T ss_pred eeccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccc-cCCCC-----cccccccccccC
Confidence 999999887 44432 357889999999998 5554 2468999999999987 44432 234889999999
Q ss_pred cccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCC
Q 041463 188 DLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHN 267 (356)
Q Consensus 188 ~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n 267 (356)
.+.. +|.... +|+.+........ .+ + ....+|+.|++++|.+.. +|.. ..+|+.|++++|
T Consensus 333 ~L~~-LP~lp~---~Lq~LdLS~N~Ls-~L--------P---~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N 392 (788)
T PRK15387 333 QLTS-LPTLPS---GLQELSVSDNQLA-SL--------P---TLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGN 392 (788)
T ss_pred cccc-cccccc---ccceEecCCCccC-CC--------C---CCCcccceehhhcccccc-Cccc---ccccceEEecCC
Confidence 8863 443222 2333222221111 01 0 012467778888888874 4432 257899999999
Q ss_pred cCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCcc
Q 041463 268 HLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPS 334 (356)
Q Consensus 268 ~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~ 334 (356)
.++ .+|.. .++|+.|++++|+++ .+|... .+|+.|++++|+++..+..+..++.|..++
T Consensus 393 ~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 393 RLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVN 451 (788)
T ss_pred ccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCcccccChHHhhccCCCeEE
Confidence 988 45543 357999999999998 466533 468889999999986554557777777666
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=7.2e-19 Score=154.40 Aligned_cols=261 Identities=24% Similarity=0.224 Sum_probs=174.1
Q ss_pred EeeccCCccCCc-CCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccc------cccccccCCC
Q 041463 32 ELDVAYNELRGR-VPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSG------EIPLLFSNSS 103 (356)
Q Consensus 32 ~L~l~~~~~~~~-~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~------~~~~~~~~l~ 103 (356)
.|+|..+.+.+. ....+ .+..|+.++++++.++......++..+...+.+++++++++.+.. ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 466666666532 22222 367799999999988543222344566677889999999887752 2334567788
Q ss_pred CCcEEEcccCcccccccccccCCC---CCcEEEeecccccc----ccCccccCC-CCCcEEEecCCcccccCCchhhccc
Q 041463 104 FLYILDMSNNSLSGSIPESIGSLR---TLRFLVLRNNYLSG----ELPLSLKNC-TFMESLDLGDNNLSGNIPAWIGASM 175 (356)
Q Consensus 104 ~L~~L~l~~~~~~~~~~~~~~~l~---~L~~L~l~~~~l~~----~~~~~l~~l-~~L~~L~l~~~~l~~~~~~~~~~~~ 175 (356)
+|++|++++|.+....+..+..+. +|++|++++|.+++ .+...+..+ ++|+.|++++|.+.+.....+...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 999999999988755555444444 49999999998863 223345566 8899999999988743222222222
Q ss_pred c--cceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccC----
Q 041463 176 P--GLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEI---- 249 (356)
Q Consensus 176 ~--~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~---- 249 (356)
. ..++.|++++|.+.+..... ....+...++|+.|++++|.+.+..
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~----------------------------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 213 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRA----------------------------LAEGLKANCNLEVLDLNNNGLTDEGASAL 213 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHH----------------------------HHHHHHhCCCCCEEeccCCccChHHHHHH
Confidence 1 23899999988765311000 0111234467888999999887433
Q ss_pred chhhhcccccCeEEccCCcCcCCCCcCcC-----CCCCccEEEccCCccccc----CCccccCcCCCCEEEcccCccccc
Q 041463 250 PAELTSLVHLGTLNLSHNHLVGKIPEEIG-----NFEWLETLDLSKNKLSGS----IPPSMASLIFMNHLNLSYNNLSGE 320 (356)
Q Consensus 250 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-----~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~ 320 (356)
...+..+++|++|++++|.+++.....+. ..+.|++|++++|.+++. +...+..+++|+++++++|++...
T Consensus 214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 33456678899999999988753222221 247899999999998732 334455668899999999999854
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=8.6e-19 Score=131.19 Aligned_cols=163 Identities=31% Similarity=0.440 Sum_probs=103.1
Q ss_pred cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463 28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI 107 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 107 (356)
++++.|.+++|.++...|..-.+.+|+.|++.+|++. .+|..+.++++|+.|+++-|.+. ..|.+|+.++.|+.
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-----~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-----ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-----hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 4566666666666644444435666666666666665 34456666677777777666665 66666777777777
Q ss_pred EEcccCccc-ccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEccc
Q 041463 108 LDMSNNSLS-GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSH 186 (356)
Q Consensus 108 L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 186 (356)
||++.|.+. ...|..|..+..|+.|.+++|.+. .+|..++.+++|+.|.+.+|.+. .+|..++.... ++.|++.+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~--lrelhiqg 182 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR--LRELHIQG 182 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH--HHHHhccc
Confidence 777666654 245666666666777777777666 66666777777777777766655 56666655333 67777777
Q ss_pred CcccccCCCCcCCCC
Q 041463 187 NDLSGFIPPRVGNLS 201 (356)
Q Consensus 187 ~~l~~~~~~~~~~l~ 201 (356)
|+++ .+|+.++.+.
T Consensus 183 nrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 183 NRLT-VLPPELANLD 196 (264)
T ss_pred ceee-ecChhhhhhh
Confidence 7665 4555555543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=3e-18 Score=128.28 Aligned_cols=165 Identities=29% Similarity=0.481 Sum_probs=111.8
Q ss_pred CCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhccccccee
Q 041463 101 NSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLH 180 (356)
Q Consensus 101 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~ 180 (356)
.+.+++.|.+++|+++ ..|..++.+.+|+.|.+++|++. .+|..++.+++|+.|++.-|.+. ..
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~l------------- 94 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-IL------------- 94 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cC-------------
Confidence 4555666666666666 45555566666666666666665 55666666666666655544443 22
Q ss_pred EEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccc-cCchhhhccccc
Q 041463 181 ILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSA-EIPAELTSLVHL 259 (356)
Q Consensus 181 ~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~~~~L 259 (356)
|..++ .++.|+.|||++|.+.. ..|..|..+..|
T Consensus 95 -------------prgfg--------------------------------s~p~levldltynnl~e~~lpgnff~m~tl 129 (264)
T KOG0617|consen 95 -------------PRGFG--------------------------------SFPALEVLDLTYNNLNENSLPGNFFYMTTL 129 (264)
T ss_pred -------------ccccC--------------------------------CCchhhhhhccccccccccCCcchhHHHHH
Confidence 33332 33334446666666553 356667777888
Q ss_pred CeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccC
Q 041463 260 GTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQ 328 (356)
Q Consensus 260 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~ 328 (356)
+.|.+.+|.+. .+|..++.+.+|+.|.+..|.+. +.|..++.+.+|++|++.+|+++..+|.+..+.
T Consensus 130 ralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~ 196 (264)
T KOG0617|consen 130 RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLD 196 (264)
T ss_pred HHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhh
Confidence 88888888887 78888888888888888888887 788888888888888888888888888875554
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.28 E-value=1.4e-13 Score=114.56 Aligned_cols=188 Identities=23% Similarity=0.265 Sum_probs=121.8
Q ss_pred cccceEEEcccccccccCCchHHhhc---cCCcEeeccCC---ccCCcCCCCC--------CCCCCcEEecCCCcccCcC
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLS---LTLDELDVAYN---ELRGRVPNSL--------GFNFPATVDLSSNNFEGRL 67 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~---~~L~~L~l~~~---~~~~~~~~~~--------~~~~L~~L~l~~n~~~~~~ 67 (356)
+..++.++|++|.+......++++.+ ++|++.++++= .....+++.+ ++++|++|+||+|.+...+
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 56788999999999755455554443 56777777652 1112233322 5779999999999887655
Q ss_pred CCCCCcccCCcccccEEecccccccccc-------------cccccCCCCCcEEEcccCccccc----ccccccCCCCCc
Q 041463 68 PLCIPKSIGNLKQLITLVISNNNLSGEI-------------PLLFSNSSFLYILDMSNNSLSGS----IPESIGSLRTLR 130 (356)
Q Consensus 68 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~-------------~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~ 130 (356)
+..+-.-+.++..|+.|.+.+|.+.... ...+.+-++|+.++...|++.+. +...|...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 5444445667888999999999875211 11234457888888888887532 233455667888
Q ss_pred EEEeeccccccc----cCccccCCCCCcEEEecCCcccccCCchhhcc---cccceeEEEcccCccc
Q 041463 131 FLVLRNNYLSGE----LPLSLKNCTFMESLDLGDNNLSGNIPAWIGAS---MPGLLHILDLSHNDLS 190 (356)
Q Consensus 131 ~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~---~~~~L~~L~l~~~~l~ 190 (356)
.+.+..|.+... ....+..+++|+.||+++|.++......+... ++ .|+.+++++|.+.
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~El~l~dcll~ 254 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRELNLGDCLLE 254 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hheeecccccccc
Confidence 888888877532 22456778888888888888764333333222 22 2667777766654
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.26 E-value=1.3e-11 Score=116.82 Aligned_cols=117 Identities=37% Similarity=0.611 Sum_probs=102.8
Q ss_pred cccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcc
Q 041463 234 LVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS 313 (356)
Q Consensus 234 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 313 (356)
.++.|+|+++.+.+..|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCC-cc-cCcCCCccccccCccccCCCCCCCC
Q 041463 314 YNNLSGEIPNT-NQ-FQTLNDPSIYEGNLALCGDPLPKKC 351 (356)
Q Consensus 314 ~n~~~~~~~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~~c 351 (356)
+|++++.+|.. .. +..+..+. +.+|...||.|..-.|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~-~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFN-FTDNAGLCGIPGLRAC 537 (623)
T ss_pred CCcccccCChHHhhccccCceEE-ecCCccccCCCCCCCC
Confidence 99999999976 22 23344555 7889999998854333
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=1e-13 Score=122.44 Aligned_cols=170 Identities=32% Similarity=0.532 Sum_probs=95.7
Q ss_pred cEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcc
Q 041463 106 YILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLS 185 (356)
Q Consensus 106 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~ 185 (356)
...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+..+..|.+++++.|++. .+|..++. ++ |+.|.++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-lp--Lkvli~s 151 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-LP--LKVLIVS 151 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-Cc--ceeEEEe
Confidence 34455555555 45555555555666666666665 55666666666666666666665 45554433 33 6666666
Q ss_pred cCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEcc
Q 041463 186 HNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLS 265 (356)
Q Consensus 186 ~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~ 265 (356)
+|+++ .+|..++.+..| ..|+.+.|.+. ..|..+.++.+|+.|.+.
T Consensus 152 NNkl~-~lp~~ig~~~tl--------------------------------~~ld~s~nei~-slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTL--------------------------------AHLDVSKNEIQ-SLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred cCccc-cCCcccccchhH--------------------------------HHhhhhhhhhh-hchHHhhhHHHHHHHHHh
Confidence 66655 444444433332 22555666555 344455555666666666
Q ss_pred CCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccc
Q 041463 266 HNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS 318 (356)
Q Consensus 266 ~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 318 (356)
.|.+. .+|..+..++ |..||+++|++. .+|-.|..|+.|++|-|.+|++.
T Consensus 198 Rn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 198 RNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 66655 4555555444 566666666666 55555666666666666666665
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=1.3e-12 Score=115.48 Aligned_cols=212 Identities=26% Similarity=0.397 Sum_probs=144.9
Q ss_pred eeccCCccCCcCCCCC--CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEc
Q 041463 33 LDVAYNELRGRVPNSL--GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDM 110 (356)
Q Consensus 33 L~l~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 110 (356)
|.|++-.+....-... .+..-...+++.|++. .+|..+..+-.|+.+.++.|.+. .+|..+..+..|+++++
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-----elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~l 128 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-----ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDL 128 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-----cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhh
Confidence 4444444443322222 3455567778888776 45566666777888888888877 77777888888888888
Q ss_pred ccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCccc
Q 041463 111 SNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLS 190 (356)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~ 190 (356)
+.|.+. ..|..+..++ |+.|.+++|+++ .+|..+.....|..||.+.|.+. .+|..++.... ++.|.+..|.+.
T Consensus 129 s~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~s--lr~l~vrRn~l~ 202 (722)
T KOG0532|consen 129 SSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTS--LRDLNVRRNHLE 202 (722)
T ss_pred ccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHH--HHHHHHhhhhhh
Confidence 888887 5565555554 888888888887 77777887778888888888876 56665554333 777777777765
Q ss_pred ccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCc
Q 041463 191 GFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLV 270 (356)
Q Consensus 191 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~ 270 (356)
.+|..+..|+ |..||+++|++. .+|..|..+..|++|.|.+|++.
T Consensus 203 -~lp~El~~Lp---------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 203 -DLPEELCSLP---------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -hCCHHHhCCc---------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 4455444332 445888888887 67788888888888888888887
Q ss_pred CCCCcCcCCCC---CccEEEccCCc
Q 041463 271 GKIPEEIGNFE---WLETLDLSKNK 292 (356)
Q Consensus 271 ~~~~~~~~~~~---~L~~L~L~~n~ 292 (356)
..|..++-.. =.++|+...|+
T Consensus 248 -SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 248 -SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -CChHHHHhccceeeeeeecchhcc
Confidence 4554443322 24566666663
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=1.8e-13 Score=114.06 Aligned_cols=92 Identities=26% Similarity=0.299 Sum_probs=69.9
Q ss_pred ccccccccccEEeecCCccccc----CchhhhcccccCeEEccCCcCcCCCCcCc-----CCCCCccEEEccCCcccccC
Q 041463 227 KYFTTLYLVNLLDLSSTNLSAE----IPAELTSLVHLGTLNLSHNHLVGKIPEEI-----GNFEWLETLDLSKNKLSGSI 297 (356)
Q Consensus 227 ~~~~~~~~L~~L~L~~~~l~~~----~~~~~~~~~~L~~L~L~~n~i~~~~~~~~-----~~~~~L~~L~L~~n~i~~~~ 297 (356)
..+..+++|++|||..|.++.. +...++.+++|++|++.+|.+.+.....+ ...|+|+.|.+.+|.|+...
T Consensus 207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 3466788999999999998753 34567788899999999998876544433 34789999999999998442
Q ss_pred ----CccccCcCCCCEEEcccCccc
Q 041463 298 ----PPSMASLIFMNHLNLSYNNLS 318 (356)
Q Consensus 298 ----~~~~~~l~~L~~L~l~~n~~~ 318 (356)
...+...+.|..|+|++|++.
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCccccc
Confidence 223344788999999999993
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=2.9e-11 Score=94.41 Aligned_cols=122 Identities=29% Similarity=0.295 Sum_probs=31.8
Q ss_pred CCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463 29 TLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI 107 (356)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 107 (356)
.+++|+|.+|.|.. +...- .+.+|+.|++++|.+.. + +.+..++.|++|++++|.++...+.....+++|++
T Consensus 20 ~~~~L~L~~n~I~~-Ie~L~~~l~~L~~L~Ls~N~I~~-----l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 20 KLRELNLRGNQIST-IENLGATLDKLEVLDLSNNQITK-----L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccc-ccchhhhhcCCCEEECCCCCCcc-----c-cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 45666666666653 22221 34566666666666552 1 23445566666666666665332211234556666
Q ss_pred EEcccCcccccc-cccccCCCCCcEEEeeccccccccC---ccccCCCCCcEEE
Q 041463 108 LDMSNNSLSGSI-PESIGSLRTLRFLVLRNNYLSGELP---LSLKNCTFMESLD 157 (356)
Q Consensus 108 L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~ 157 (356)
|++++|++.+.. -..++.+++|++|++.+|+++...- ..+..+|+|+.||
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 666666554321 1233445555555555555542211 1234445555554
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=6.9e-12 Score=107.60 Aligned_cols=209 Identities=25% Similarity=0.204 Sum_probs=108.0
Q ss_pred CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccc--cccccccCCCCCcEEEcccCcccccccccc-cC
Q 041463 49 GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSG--EIPLLFSNSSFLYILDMSNNSLSGSIPESI-GS 125 (356)
Q Consensus 49 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~ 125 (356)
++.+|+.+.|.++.+...+.. .....+++++.|++++|-+.. ........+++|+.|+++.|++........ ..
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 456777777777766421100 234456777777777765542 122334556777777777776542211111 13
Q ss_pred CCCCcEEEeeccccccccCc-cccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCc
Q 041463 126 LRTLRFLVLRNNYLSGELPL-SLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMK 204 (356)
Q Consensus 126 l~~L~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 204 (356)
+++|+.|.++.|.++..... .+..+++|+.|++++|.. .............|+.|++++|.+... +.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~--~~~~~~~~~i~~~L~~LdLs~N~li~~-~~--------- 263 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEI--ILIKATSTKILQTLQELDLSNNNLIDF-DQ--------- 263 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccc--cceecchhhhhhHHhhccccCCccccc-cc---------
Confidence 55677777777766532222 234566777777776631 111111222233367777776665321 10
Q ss_pred ccCCCCCccCCCeeeeecCCccccccccccccEEeecCCccccc-Cchh-----hhcccccCeEEccCCcCcCCCC--cC
Q 041463 205 VEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAE-IPAE-----LTSLVHLGTLNLSHNHLVGKIP--EE 276 (356)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~-----~~~~~~L~~L~L~~n~i~~~~~--~~ 276 (356)
....+.++.|+.|+++.+++.+. .|.. ...+++|+.|++..|+|. .++ ..
T Consensus 264 ---------------------~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~ 321 (505)
T KOG3207|consen 264 ---------------------GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNH 321 (505)
T ss_pred ---------------------ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccch
Confidence 01123445555566666666542 1111 234566666666666664 222 13
Q ss_pred cCCCCCccEEEccCCccc
Q 041463 277 IGNFEWLETLDLSKNKLS 294 (356)
Q Consensus 277 ~~~~~~L~~L~L~~n~i~ 294 (356)
+..+++|++|.+..|.++
T Consensus 322 l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 322 LRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhccchhhhhhccccccc
Confidence 344566666666666665
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.13 E-value=2.7e-11 Score=117.38 Aligned_cols=288 Identities=17% Similarity=0.191 Sum_probs=159.7
Q ss_pred cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCc--ccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCC
Q 041463 28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN--FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFL 105 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L 105 (356)
...+.+.+.++.+. ..+....+++|++|-+.+|. +. .++ +..|..+|.|++||+++|.-.+..|..++.+-+|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~~~~~L~tLll~~n~~~l~-~is---~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSSENPKLRTLLLQRNSDWLL-EIS---GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred hheeEEEEeccchh-hccCCCCCCccceEEEeecchhhh-hcC---HHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 35677777777666 45555566788888888875 22 111 2347778888888888876555788888888888
Q ss_pred cEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc--ccCCchhhcccccceeEEE
Q 041463 106 YILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS--GNIPAWIGASMPGLLHILD 183 (356)
Q Consensus 106 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~--~~~~~~~~~~~~~~L~~L~ 183 (356)
++|+++++.+. ..|..+.++..|.+|++..+......+.....+++|++|.+...... ....... ..+ ..|+.+.
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~L-e~L~~ls 674 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL-ENL-EHLENLS 674 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhh-hcc-cchhhhe
Confidence 88888888888 77888888888888888877655455556666888888888665421 1111111 111 1133333
Q ss_pred cccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhh-----hc-cc
Q 041463 184 LSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAEL-----TS-LV 257 (356)
Q Consensus 184 l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-----~~-~~ 257 (356)
...... .+...+..+..|......... . .............+.+|+.|.+.++.+.+....+. .. ++
T Consensus 675 ~~~~s~--~~~e~l~~~~~L~~~~~~l~~--~---~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~ 747 (889)
T KOG4658|consen 675 ITISSV--LLLEDLLGMTRLRSLLQSLSI--E---GCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP 747 (889)
T ss_pred eecchh--HhHhhhhhhHHHHHHhHhhhh--c---ccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH
Confidence 322211 000111111111110000000 0 01112223345567778888888877754322221 11 33
Q ss_pred ccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccccc--CCCCcccCcCC
Q 041463 258 HLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGE--IPNTNQFQTLN 331 (356)
Q Consensus 258 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~l~~l~ 331 (356)
++..+...++... ..+.+.--.++|+.|.+..|...+.+......+..+..+-+..+.+.+. .....+++.+.
T Consensus 748 ~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~ 822 (889)
T KOG4658|consen 748 NLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLY 822 (889)
T ss_pred HHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeE
Confidence 4444445555433 3344444567788888888766655555455555555444444444433 33334444443
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=3.1e-11 Score=99.01 Aligned_cols=60 Identities=32% Similarity=0.332 Sum_probs=28.0
Q ss_pred CCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc
Q 041463 102 SSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS 164 (356)
Q Consensus 102 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 164 (356)
+..|+++|+++|.|. .......-.|.++.|+++.|.+. ....++.+++|..||+++|.+.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~--~v~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR--TVQNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee--eehhhhhcccceEeecccchhH
Confidence 344555555555544 23333333445555555555553 1223444555555555555443
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=1e-10 Score=105.85 Aligned_cols=79 Identities=44% Similarity=0.624 Sum_probs=35.7
Q ss_pred EeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcc
Q 041463 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNL 317 (356)
Q Consensus 238 L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~ 317 (356)
+.+++|.+. ..+..+..+.++..+.+.+|++. ..+..++.+++++.|++++|++++. +. +..+.+++.+++++|.+
T Consensus 214 l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 214 LDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred hhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCEEeccCccc
Confidence 444444322 22333444444444444455444 2234444445555555555555522 22 44445555555555544
Q ss_pred ccc
Q 041463 318 SGE 320 (356)
Q Consensus 318 ~~~ 320 (356)
...
T Consensus 290 ~~~ 292 (394)
T COG4886 290 SNA 292 (394)
T ss_pred ccc
Confidence 433
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=4.3e-11 Score=93.41 Aligned_cols=134 Identities=24% Similarity=0.234 Sum_probs=50.9
Q ss_pred cCCCCCCCCCCcEEecCCCcccCcCCCCCCcccC-CcccccEEecccccccccccccccCCCCCcEEEcccCcccccccc
Q 041463 43 RVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIG-NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPE 121 (356)
Q Consensus 43 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 121 (356)
..+...+..++++|+|++|.|.. + +.+. .+.+|+.|++++|.+... ..+..+++|++|++++|++....+.
T Consensus 11 ~~~~~~n~~~~~~L~L~~n~I~~-----I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 11 QIAQYNNPVKLRELNLRGNQIST-----I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHH
T ss_pred ccccccccccccccccccccccc-----c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccc
Confidence 44555567789999999999872 2 3454 578999999999999844 3577899999999999999855433
Q ss_pred cccCCCCCcEEEeeccccccc-cCccccCCCCCcEEEecCCcccccC--CchhhcccccceeEEEcc
Q 041463 122 SIGSLRTLRFLVLRNNYLSGE-LPLSLKNCTFMESLDLGDNNLSGNI--PAWIGASMPGLLHILDLS 185 (356)
Q Consensus 122 ~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~~~l~~~~--~~~~~~~~~~~L~~L~l~ 185 (356)
....+++|++|.+++|++... ....+..+++|+.|++.+|++.... ...+...+|. |+.||..
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~-Lk~LD~~ 148 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPS-LKVLDGQ 148 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT--SEETTE
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcCh-hheeCCE
Confidence 224689999999999999742 2356788999999999999987331 1233344555 7887754
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=3.3e-11 Score=98.89 Aligned_cols=130 Identities=28% Similarity=0.307 Sum_probs=87.0
Q ss_pred CCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCcccccc
Q 041463 151 TFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFT 230 (356)
Q Consensus 151 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (356)
+.|+.+|+++|.+. .+...+ +..|. ++.|+++.|.+.... .+.
T Consensus 284 q~LtelDLS~N~I~-~iDESv-KL~Pk-ir~L~lS~N~i~~v~----------------------------------nLa 326 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESV-KLAPK-LRRLILSQNRIRTVQ----------------------------------NLA 326 (490)
T ss_pred hhhhhccccccchh-hhhhhh-hhccc-eeEEeccccceeeeh----------------------------------hhh
Confidence 45667777777665 333322 22343 777777777654211 123
Q ss_pred ccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCccccc-CCccccCcCCCCE
Q 041463 231 TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGS-IPPSMASLIFMNH 309 (356)
Q Consensus 231 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~ 309 (356)
.+++|+.|||++|.++ ....|-..+.+.++|.+++|.|.+ ...+..+.+|..||+++|+|.+. -...++++|.|+.
T Consensus 327 ~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~ 403 (490)
T KOG1259|consen 327 ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLET 403 (490)
T ss_pred hcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHH
Confidence 4556777888888887 344566677888889999888762 24566778888999999988732 2335778888998
Q ss_pred EEcccCccccc
Q 041463 310 LNLSYNNLSGE 320 (356)
Q Consensus 310 L~l~~n~~~~~ 320 (356)
+.+.+|++.+.
T Consensus 404 l~L~~NPl~~~ 414 (490)
T KOG1259|consen 404 LRLTGNPLAGS 414 (490)
T ss_pred HhhcCCCcccc
Confidence 88988888753
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.4e-11 Score=105.71 Aligned_cols=211 Identities=25% Similarity=0.265 Sum_probs=142.7
Q ss_pred CcccccEEeccccccccccc-ccccCCCCCcEEEcccCcccc--cccccccCCCCCcEEEeeccccccccCc-cccCCCC
Q 041463 77 NLKQLITLVISNNNLSGEIP-LLFSNSSFLYILDMSNNSLSG--SIPESIGSLRTLRFLVLRNNYLSGELPL-SLKNCTF 152 (356)
Q Consensus 77 ~l~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~l~~l~~ 152 (356)
.+.+|+++.+.++.+..... .....+++++.||+++|-+.. .+......+|+|+.|.++.|.+...... .-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 46788888998888763221 467788999999999987652 2334556788999999999887521111 1235678
Q ss_pred CcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCcccccccc
Q 041463 153 MESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTL 232 (356)
Q Consensus 153 L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (356)
|+.|.++.|+++..-..++...+|. ++.|++..|... ... ......+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPs-l~~L~L~~N~~~--~~~------------------------------~~~~~i~ 245 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPS-LEVLYLEANEII--LIK------------------------------ATSTKIL 245 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCc-HHHhhhhccccc--cee------------------------------cchhhhh
Confidence 8899999998875445555555665 888888887411 100 0112334
Q ss_pred ccccEEeecCCcccccC-chhhhcccccCeEEccCCcCcCC-CCcC-----cCCCCCccEEEccCCcccccCC--ccccC
Q 041463 233 YLVNLLDLSSTNLSAEI-PAELTSLVHLGTLNLSHNHLVGK-IPEE-----IGNFEWLETLDLSKNKLSGSIP--PSMAS 303 (356)
Q Consensus 233 ~~L~~L~L~~~~l~~~~-~~~~~~~~~L~~L~L~~n~i~~~-~~~~-----~~~~~~L~~L~L~~n~i~~~~~--~~~~~ 303 (356)
..|+.|+|++|.+.+.. ......++.|..|+++.+.|.+. .|+. ...+++|++|+++.|+|. .++ ..+..
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~ 324 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRT 324 (505)
T ss_pred hHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhc
Confidence 55777999998876422 23456778899999999988753 2333 245789999999999997 333 23455
Q ss_pred cCCCCEEEcccCcccccC
Q 041463 304 LIFMNHLNLSYNNLSGEI 321 (356)
Q Consensus 304 l~~L~~L~l~~n~~~~~~ 321 (356)
+++|+.+.+..|.++...
T Consensus 325 l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 325 LENLKHLRITLNYLNKET 342 (505)
T ss_pred cchhhhhhcccccccccc
Confidence 778888888888887653
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=3.4e-10 Score=102.41 Aligned_cols=197 Identities=34% Similarity=0.521 Sum_probs=126.4
Q ss_pred EEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCC-CCcEEEcccCcccccccccccCCCCCcEEE
Q 041463 55 TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSS-FLYILDMSNNSLSGSIPESIGSLRTLRFLV 133 (356)
Q Consensus 55 ~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 133 (356)
.+++..+.+.... ..+...+.++.+++.++.+. .++....... +|+.|+++.|.+. ..+..+..+++|+.|+
T Consensus 97 ~l~~~~~~~~~~~-----~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~ 169 (394)
T COG4886 97 SLDLNLNRLRSNI-----SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLD 169 (394)
T ss_pred eeeccccccccCc-----hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccc
Confidence 4666666653221 22334567888888888887 4455555553 8888888888887 4445567788888888
Q ss_pred eeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCcc
Q 041463 134 LRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQH 213 (356)
Q Consensus 134 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~ 213 (356)
+++|+++ .++......+.|+.|++++|.+. .+|.... .+..++.+.+++|... ..+..+
T Consensus 170 l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~--~~~~L~~l~~~~N~~~-~~~~~~---------------- 228 (394)
T COG4886 170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE--LLSALEELDLSNNSII-ELLSSL---------------- 228 (394)
T ss_pred cCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhh--hhhhhhhhhhcCCcce-ecchhh----------------
Confidence 8888887 55555557788888888888887 5555431 2223788888777422 222222
Q ss_pred CCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcc
Q 041463 214 EGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKL 293 (356)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i 293 (356)
..+.++..+.+.++.+. ..+..+..+++++.|++++|.+++ ++. +..+.+++.|+++++.+
T Consensus 229 ----------------~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 229 ----------------SNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ----------------hhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccc
Confidence 23334444666666665 234556666777788888887773 333 66777788888887777
Q ss_pred cccCC
Q 041463 294 SGSIP 298 (356)
Q Consensus 294 ~~~~~ 298 (356)
....+
T Consensus 290 ~~~~~ 294 (394)
T COG4886 290 SNALP 294 (394)
T ss_pred cccch
Confidence 64433
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.06 E-value=1.4e-10 Score=74.66 Aligned_cols=61 Identities=41% Similarity=0.544 Sum_probs=46.5
Q ss_pred cccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcc
Q 041463 257 VHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNL 317 (356)
Q Consensus 257 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~ 317 (356)
|+|++|++++|.+....+..|..+++|++|++++|+++...+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677788888877755556777788888888888888766777788888888888888764
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=1.1e-09 Score=70.45 Aligned_cols=61 Identities=38% Similarity=0.500 Sum_probs=56.2
Q ss_pred ccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcc
Q 041463 233 YLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKL 293 (356)
Q Consensus 233 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i 293 (356)
++|+.|++++|.+....+.+|.++++|++|++++|.+....+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688999999999987778999999999999999999977788999999999999999975
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.91 E-value=3.8e-09 Score=100.24 Aligned_cols=98 Identities=30% Similarity=0.484 Sum_probs=85.0
Q ss_pred cccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCc-
Q 041463 226 RKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASL- 304 (356)
Q Consensus 226 ~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l- 304 (356)
+..+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|+.++.+++|+.|+|++|++++.+|..+...
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~ 514 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcc
Confidence 3345667788889999999998999999999999999999999999999999999999999999999999999887763
Q ss_pred CCCCEEEcccCcccccCCC
Q 041463 305 IFMNHLNLSYNNLSGEIPN 323 (356)
Q Consensus 305 ~~L~~L~l~~n~~~~~~~~ 323 (356)
.++..+++.+|+..+-.|.
T Consensus 515 ~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 515 LHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred ccCceEEecCCccccCCCC
Confidence 4677899999987655443
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=9.7e-10 Score=106.77 Aligned_cols=268 Identities=22% Similarity=0.230 Sum_probs=168.8
Q ss_pred cCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccc--ccccccccccCCCCCcEEEcccCccccccc
Q 041463 43 RVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNN--LSGEIPLLFSNSSFLYILDMSNNSLSGSIP 120 (356)
Q Consensus 43 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 120 (356)
..+........+.+.+-+|.+.. ++.. ...++|++|-+..|. +......+|..++.|+.||+++|.-...+|
T Consensus 515 ~~~~~~~~~~~rr~s~~~~~~~~-----~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 515 EIPQVKSWNSVRRMSLMNNKIEH-----IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred ccccccchhheeEEEEeccchhh-----ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 35666677889999999887752 2222 235689999999986 554566679999999999999988777999
Q ss_pred ccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCccc--ccCCCCcC
Q 041463 121 ESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLS--GFIPPRVG 198 (356)
Q Consensus 121 ~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~ 198 (356)
..++.+-+||+|+++++.+. .+|..+..++.|.+|++..+.-....+.. ...+.+ |+.|.+...... ......+.
T Consensus 589 ~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~-Lr~L~l~~s~~~~~~~~l~el~ 665 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQS-LRVLRLPRSALSNDKLLLKELE 665 (889)
T ss_pred hHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccch-hhhccc-ccEEEeeccccccchhhHHhhh
Confidence 99999999999999999999 89999999999999999987644344333 333444 899988765421 11112223
Q ss_pred CCCCCcccCCCCCccCCCeeeeecCCccccccccccc----cEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCC
Q 041463 199 NLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLV----NLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIP 274 (356)
Q Consensus 199 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L----~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~ 274 (356)
.++.|+.... ..... .....+..+..| +.+.+.++... ..+..+..+.+|+.|.+.++.+.+...
T Consensus 666 ~Le~L~~ls~---~~~s~-------~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~ 734 (889)
T KOG4658|consen 666 NLEHLENLSI---TISSV-------LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVI 734 (889)
T ss_pred cccchhhhee---ecchh-------HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhc
Confidence 3333332111 00000 000011111121 22333333322 344556778899999999998864333
Q ss_pred cCcC-----C-CCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC-cccCcCC
Q 041463 275 EEIG-----N-FEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLN 331 (356)
Q Consensus 275 ~~~~-----~-~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~ 331 (356)
.+.. . ++++..+.+.+|... ..+.+..-.++|+.|++.+|+....+.+. ..+..++
T Consensus 735 ~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~ 797 (889)
T KOG4658|consen 735 EWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELK 797 (889)
T ss_pred ccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcc
Confidence 3321 1 445556666666444 23333334589999999998777554443 4444443
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.73 E-value=2.1e-10 Score=104.62 Aligned_cols=174 Identities=28% Similarity=0.228 Sum_probs=113.4
Q ss_pred ccceEEEcccccccccCCchHHhhccCCcEeeccCC---------ccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCc
Q 041463 3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYN---------ELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPK 73 (356)
Q Consensus 3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~---------~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 73 (356)
.+||+|.|.++.+.. ..++..+-.+|+.|.-.+. .-.+.+...+.+.+|.+.++++|.+. .+-.
T Consensus 109 ~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-----~mD~ 181 (1096)
T KOG1859|consen 109 RSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-----LMDE 181 (1096)
T ss_pred cceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-----hHHH
Confidence 456666666666652 3333333234444433322 11123444455778888888888776 2335
Q ss_pred ccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCC
Q 041463 74 SIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFM 153 (356)
Q Consensus 74 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L 153 (356)
+++-++.++.|+|++|.+++.. .++.+++|++||++.|.+..+.-.....+ .|+.|.+++|.++. ...+.++.+|
T Consensus 182 SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~t--L~gie~LksL 256 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTT--LRGIENLKSL 256 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHh--hhhHHhhhhh
Confidence 6777889999999999987553 78899999999999999884333333444 49999999998862 3467788889
Q ss_pred cEEEecCCcccccCCchhhcccccceeEEEcccCcc
Q 041463 154 ESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDL 189 (356)
Q Consensus 154 ~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l 189 (356)
+.||+++|-+.+.-.-.....+.. |+.|.+.||++
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~-L~~L~LeGNPl 291 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSS-LIVLWLEGNPL 291 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHH-HHHHhhcCCcc
Confidence 999999887763322222222222 78888888865
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.1e-10 Score=95.73 Aligned_cols=181 Identities=23% Similarity=0.154 Sum_probs=80.4
Q ss_pred ccEEeccccccccc-ccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeecc-ccccccC-ccccCCCCCcEEE
Q 041463 81 LITLVISNNNLSGE-IPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNN-YLSGELP-LSLKNCTFMESLD 157 (356)
Q Consensus 81 L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~-~~l~~l~~L~~L~ 157 (356)
++.+|++...++.. ....++.+.+|+.|.+.+.++.+.....++.-.+|+.|+++.+ .++.... -.+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 44555555444321 2223444555555555555555444444444455555555544 2221111 1234455555555
Q ss_pred ecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccE
Q 041463 158 LGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL 237 (356)
Q Consensus 158 l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 237 (356)
+++|.+.......+..+..+.++.|+++|+.-. .... + ......++++|..
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn-l~~s---h-------------------------~~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN-LQKS---H-------------------------LSTLVRRCPNLVH 317 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhh-hhhh---H-------------------------HHHHHHhCCceee
Confidence 555554323333333334444555555544311 0000 0 0111234555555
Q ss_pred EeecCCc-ccccCchhhhcccccCeEEccCCcCcCCCCc---CcCCCCCccEEEccCCc
Q 041463 238 LDLSSTN-LSAEIPAELTSLVHLGTLNLSHNHLVGKIPE---EIGNFEWLETLDLSKNK 292 (356)
Q Consensus 238 L~L~~~~-l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~---~~~~~~~L~~L~L~~n~ 292 (356)
|||+.+. ++......|..++.|++|.++.|.. ++|+ .+...|+|.+|++-+|-
T Consensus 318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 6665544 2322334455556666666666552 2333 23445566666655553
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.67 E-value=3.7e-09 Score=95.93 Aligned_cols=127 Identities=26% Similarity=0.299 Sum_probs=66.8
Q ss_pred cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463 28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI 107 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 107 (356)
..++.+.+..+.+.......-.+.+|+.|++.+|.+.. +...+..+++|++|++++|.|+.. ..+..++.|+.
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-----i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-----IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhh-----cccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 34555555555555322223345666666666666652 111145566666666666666533 22445555666
Q ss_pred EEcccCcccccccccccCCCCCcEEEeeccccccccC-ccccCCCCCcEEEecCCccc
Q 041463 108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELP-LSLKNCTFMESLDLGDNNLS 164 (356)
Q Consensus 108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~ 164 (356)
|++.+|.+... ..+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 66666666522 123335566666666666653222 1 345556666666666554
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.63 E-value=3.2e-10 Score=103.53 Aligned_cols=111 Identities=29% Similarity=0.361 Sum_probs=86.2
Q ss_pred cccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcC-cCCCCCccEEEccCCcccccCCccccCcCCCC
Q 041463 230 TTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEE-IGNFEWLETLDLSKNKLSGSIPPSMASLIFMN 308 (356)
Q Consensus 230 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 308 (356)
.-++.++.|+|+.|++... ..+..++.|++|+|+.|.+. .+|.. -.++ .|+.|.+++|.++ +.- .+.++.+|+
T Consensus 184 qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~-tL~-gie~LksL~ 257 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALT-TLR-GIENLKSLY 257 (1096)
T ss_pred HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHH-hhh-hHHhhhhhh
Confidence 3456677799999999743 36788899999999999987 55542 2333 3999999999998 333 367899999
Q ss_pred EEEcccCccccc--CCCCcccCcCCCccccccCccccCCCCC
Q 041463 309 HLNLSYNNLSGE--IPNTNQFQTLNDPSIYEGNLALCGDPLP 348 (356)
Q Consensus 309 ~L~l~~n~~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 348 (356)
.||+++|=+.+. ...+..+..|.++. +.|||..| +||+
T Consensus 258 ~LDlsyNll~~hseL~pLwsLs~L~~L~-LeGNPl~c-~p~h 297 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSELEPLWSLSSLIVLW-LEGNPLCC-APWH 297 (1096)
T ss_pred ccchhHhhhhcchhhhHHHHHHHHHHHh-hcCCcccc-CHHH
Confidence 999999988864 55557778888888 89999888 8885
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=3.5e-09 Score=96.04 Aligned_cols=245 Identities=23% Similarity=0.233 Sum_probs=137.6
Q ss_pred CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCC
Q 041463 49 GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRT 128 (356)
Q Consensus 49 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 128 (356)
.+..++.+.++.|.+.. +-..+..+.+++.+++.+|.+.. +...+..+++|++|++++|.|++..+ +..++.
T Consensus 70 ~l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~ 141 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTL 141 (414)
T ss_pred HhHhHHhhccchhhhhh-----hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccc
Confidence 45677777788887763 11346678899999999999873 33336778999999999999885443 566777
Q ss_pred CcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCC
Q 041463 129 LRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPP 208 (356)
Q Consensus 129 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~ 208 (356)
|+.|.+.+|.+.. ...+..++.|+.+++++|.+...-+.. ...+.. ++.+.+.+|.+... ..+..+..+.....
T Consensus 142 L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~-l~~l~l~~n~i~~i--~~~~~~~~l~~~~l 215 (414)
T KOG0531|consen 142 LKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELIS-LEELDLGGNSIREI--EGLDLLKKLVLLSL 215 (414)
T ss_pred hhhheeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccc-hHHHhccCCchhcc--cchHHHHHHHHhhc
Confidence 9999999998863 245556888999999999876333311 122332 77778877765421 11111111111000
Q ss_pred --CCCccCCCeeeeecCCccccccccc--cccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCcc
Q 041463 209 --KSVQHEGRLRVVTKGSERKYFTTLY--LVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLE 284 (356)
Q Consensus 209 --~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~ 284 (356)
..+.. ......+. +|+.+.++++++.. .+..+..+..+..+++.++.+... ..+...+.+.
T Consensus 216 ~~n~i~~------------~~~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~ 280 (414)
T KOG0531|consen 216 LDNKISK------------LEGLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLS 280 (414)
T ss_pred cccccee------------ccCcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHH
Confidence 00000 00001111 25556666666552 223344455566666666655421 1233444555
Q ss_pred EEEccCCccccc---CCc-cccCcCCCCEEEcccCcccccCC
Q 041463 285 TLDLSKNKLSGS---IPP-SMASLIFMNHLNLSYNNLSGEIP 322 (356)
Q Consensus 285 ~L~L~~n~i~~~---~~~-~~~~l~~L~~L~l~~n~~~~~~~ 322 (356)
.+....+++... ... .....+.++.+.+..|++....+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 281 ELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred HhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 555555555421 111 12335566666666666665444
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=8.2e-10 Score=90.66 Aligned_cols=214 Identities=19% Similarity=0.139 Sum_probs=114.6
Q ss_pred CCcEEEcccCccccc-ccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCc-ccccCCchhhcccccceeE
Q 041463 104 FLYILDMSNNSLSGS-IPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNN-LSGNIPAWIGASMPGLLHI 181 (356)
Q Consensus 104 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~L~~ 181 (356)
.||++|++...++.. .-..++.+.+|+.|.+.++++.+.+...++.-.+|+.++++.+. ++......+...+.. |..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~-L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR-LDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh-Hhh
Confidence 366666666555421 12234455566666666666655555555555666666666553 332222333333333 566
Q ss_pred EEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCccc---ccCchhhhcccc
Q 041463 182 LDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLS---AEIPAELTSLVH 258 (356)
Q Consensus 182 L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~~~~ 258 (356)
|++++|.+....... ..-.--++|+.|+++|+.-. +....-...+|+
T Consensus 265 LNlsWc~l~~~~Vtv------------------------------~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~ 314 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTV------------------------------AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN 314 (419)
T ss_pred cCchHhhccchhhhH------------------------------HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc
Confidence 666665433111000 00011235666888886532 122233456789
Q ss_pred cCeEEccCCc-CcCCCCcCcCCCCCccEEEccCCcccccCCcc---ccCcCCCCEEEcccCcccccCCCC-cccCcCCCc
Q 041463 259 LGTLNLSHNH-LVGKIPEEIGNFEWLETLDLSKNKLSGSIPPS---MASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDP 333 (356)
Q Consensus 259 L~~L~L~~n~-i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~ 333 (356)
|.+|+|++|. ++......|-.++.|++|.++.|... +|.. +...|.|.+|++-++---+...-+ ..++.|+..
T Consensus 315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lkin 392 (419)
T KOG2120|consen 315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKIN 392 (419)
T ss_pred eeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccccc
Confidence 9999999886 44333345567889999999998653 4443 456788999998877544333322 445555433
Q ss_pred cccccCccccCCCCCCCCCC
Q 041463 334 SIYEGNLALCGDPLPKKCPE 353 (356)
Q Consensus 334 ~~~~~~~~~~~~~~~~~c~~ 353 (356)
..+.+ ....|..-+|+.
T Consensus 393 ~q~~~---~iarpv~~~~~s 409 (419)
T KOG2120|consen 393 CQHFN---FIARPVSGQCES 409 (419)
T ss_pred ceeee---eeeccccccccc
Confidence 31111 123555555554
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.42 E-value=3.9e-08 Score=79.98 Aligned_cols=187 Identities=21% Similarity=0.193 Sum_probs=128.1
Q ss_pred cccceEEEcccccccccCCchHHhhc---cCCcEeeccCCccCC----c--------CCCCCCCCCCcEEecCCCcccCc
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLS---LTLDELDVAYNELRG----R--------VPNSLGFNFPATVDLSSNNFEGR 66 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~---~~L~~L~l~~~~~~~----~--------~~~~~~~~~L~~L~l~~n~~~~~ 66 (356)
+..++.++|++|.|......++++.. .+|++.++++- +++ . .+..++|++|+++++|+|.+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 45688999999999876666666654 56666666653 121 1 12234799999999999999877
Q ss_pred CCCCCCcccCCcccccEEecccccccccccc-------------cccCCCCCcEEEcccCcccccc----cccccCCCCC
Q 041463 67 LPLCIPKSIGNLKQLITLVISNNNLSGEIPL-------------LFSNSSFLYILDMSNNSLSGSI----PESIGSLRTL 129 (356)
Q Consensus 67 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-------------~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L 129 (356)
+|.-+-.-+.+...|..|.+++|.+....-. -..+-|.|+.+++..|++..-. ...+..-.+|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 7655555677889999999999987522111 1335688999999999876221 2223333578
Q ss_pred cEEEeeccccccccC-----ccccCCCCCcEEEecCCcccccCCchhhc---ccccceeEEEcccCccc
Q 041463 130 RFLVLRNNYLSGELP-----LSLKNCTFMESLDLGDNNLSGNIPAWIGA---SMPGLLHILDLSHNDLS 190 (356)
Q Consensus 130 ~~L~l~~~~l~~~~~-----~~l~~l~~L~~L~l~~~~l~~~~~~~~~~---~~~~~L~~L~l~~~~l~ 190 (356)
+.+.+..|.+..... ..+..+.+|+.||+++|.++......... .++. ++.|.+.+|-+.
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~-lrEL~lnDClls 255 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL-LRELRLNDCLLS 255 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch-hhhccccchhhc
Confidence 999999988864322 23456789999999999887443333332 2333 788998888664
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.39 E-value=8e-07 Score=69.30 Aligned_cols=129 Identities=21% Similarity=0.190 Sum_probs=96.5
Q ss_pred CCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEE
Q 041463 29 TLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYIL 108 (356)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 108 (356)
.-+++++++..+.....-..-......+++++|.+... ..|.+++.|.+|.+++|.|+.+.|..-..+++|+.|
T Consensus 20 ~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L 93 (233)
T KOG1644|consen 20 RERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTL 93 (233)
T ss_pred cccccccccccccchhhccccccccceecccccchhhc------ccCCCccccceEEecCCcceeeccchhhhccccceE
Confidence 45677887776653222111356888999999988632 467889999999999999997777777778999999
Q ss_pred EcccCcccccc-cccccCCCCCcEEEeeccccccccC---ccccCCCCCcEEEecCCcc
Q 041463 109 DMSNNSLSGSI-PESIGSLRTLRFLVLRNNYLSGELP---LSLKNCTFMESLDLGDNNL 163 (356)
Q Consensus 109 ~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l~~~~l 163 (356)
.+.+|.+.... -..++.+|.|++|.+-+|.++..-- ..+..+++|+.||+++-.-
T Consensus 94 ~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 94 ILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred EecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 99999876332 2346778999999999998874322 3567889999999987543
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=2.2e-08 Score=82.46 Aligned_cols=85 Identities=31% Similarity=0.338 Sum_probs=43.9
Q ss_pred cccccEEecccccccc--cccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccC-ccccCCCCCc
Q 041463 78 LKQLITLVISNNNLSG--EIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELP-LSLKNCTFME 154 (356)
Q Consensus 78 l~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~ 154 (356)
...++++++.+|.|++ .+...+..+|.|+.|+++.|.+....-..-....+|+.|.+.+..+...-. ..+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4456666666666542 222334556666666666665542211111234466666666665543222 2334556666
Q ss_pred EEEecCCc
Q 041463 155 SLDLGDNN 162 (356)
Q Consensus 155 ~L~l~~~~ 162 (356)
.|+++.|.
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 66666663
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.35 E-value=2.8e-09 Score=91.44 Aligned_cols=277 Identities=17% Similarity=0.105 Sum_probs=153.2
Q ss_pred ceEEEccccccc-ccCCchHHhhccCCcEeeccCCccC-CcCCCCC--CCCCCcEEecCCCc-ccCcCCCCCCcccCCcc
Q 041463 5 LRTLVLNKARIS-DTIPDWFWQLSLTLDELDVAYNELR-GRVPNSL--GFNFPATVDLSSNN-FEGRLPLCIPKSIGNLK 79 (356)
Q Consensus 5 L~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~--~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~ 79 (356)
|+.|.+.++.=. ......+...+|+++.|.+.+|... +.....+ .+++|++|++..|. ++... +-.....++
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~---Lk~la~gC~ 216 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS---LKYLAEGCR 216 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH---HHHHHHhhh
Confidence 677888887443 3333445556799999999888522 1111112 58999999999853 33210 111234588
Q ss_pred cccEEeccccc-cccc-ccccccCCCCCcEEEcccCccc-ccc-cccccCCCCCcEEEeecc-ccccccC-ccccCCCCC
Q 041463 80 QLITLVISNNN-LSGE-IPLLFSNSSFLYILDMSNNSLS-GSI-PESIGSLRTLRFLVLRNN-YLSGELP-LSLKNCTFM 153 (356)
Q Consensus 80 ~L~~L~l~~~~-i~~~-~~~~~~~l~~L~~L~l~~~~~~-~~~-~~~~~~l~~L~~L~l~~~-~l~~~~~-~~l~~l~~L 153 (356)
+|.++++++|. +.+. +...++++.+++.+...||.-. ... ...-..+.-+..+++..| .++++.. ..-..+..|
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 99999999994 4432 2234566777777777776421 111 111123444555555555 3333221 122346678
Q ss_pred cEEEecCCc-ccccCCchhhcccccceeEEEcccCcc-cccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccc
Q 041463 154 ESLDLGDNN-LSGNIPAWIGASMPGLLHILDLSHNDL-SGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTT 231 (356)
Q Consensus 154 ~~L~l~~~~-l~~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (356)
+.++.+++. +++..-..++.... +|+.+-+.+|+. +... ++ ..-.+
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~-~L~~l~l~~c~~fsd~~------ft-------------------------~l~rn 344 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCH-NLQVLELSGCQQFSDRG------FT-------------------------MLGRN 344 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCC-ceEEEeccccchhhhhh------hh-------------------------hhhcC
Confidence 888887765 33333334444444 388888888762 1110 00 11134
Q ss_pred cccccEEeecCCccccc--CchhhhcccccCeEEccCCc-CcCCC----CcCcCCCCCccEEEccCCcc-cccCCccccC
Q 041463 232 LYLVNLLDLSSTNLSAE--IPAELTSLVHLGTLNLSHNH-LVGKI----PEEIGNFEWLETLDLSKNKL-SGSIPPSMAS 303 (356)
Q Consensus 232 ~~~L~~L~L~~~~l~~~--~~~~~~~~~~L~~L~L~~n~-i~~~~----~~~~~~~~~L~~L~L~~n~i-~~~~~~~~~~ 303 (356)
.+.|+.+++..+..... +...-.+++.|+++.++.|. |++.. ...-..+..|+.+.+++|+. ++...+.+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 55566677766654321 22222345677777777665 33321 12224456677777777744 3445556666
Q ss_pred cCCCCEEEcccCc
Q 041463 304 LIFMNHLNLSYNN 316 (356)
Q Consensus 304 l~~L~~L~l~~n~ 316 (356)
+++|+.+++-+|+
T Consensus 425 c~~Leri~l~~~q 437 (483)
T KOG4341|consen 425 CRNLERIELIDCQ 437 (483)
T ss_pred Ccccceeeeechh
Confidence 7777777776663
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.28 E-value=4.8e-07 Score=53.22 Aligned_cols=37 Identities=43% Similarity=0.686 Sum_probs=22.5
Q ss_pred CCccEEEccCCcccccCCccccCcCCCCEEEcccCccc
Q 041463 281 EWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS 318 (356)
Q Consensus 281 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 318 (356)
++|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35666777777666 34445666677777777777665
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.18 E-value=6.5e-08 Score=78.71 Aligned_cols=90 Identities=18% Similarity=0.132 Sum_probs=52.4
Q ss_pred cccccccEEeecCCccccc----CchhhhcccccCeEEccCCcCcCCCCcCc------CCCCCccEEEccCCcccccC--
Q 041463 230 TTLYLVNLLDLSSTNLSAE----IPAELTSLVHLGTLNLSHNHLVGKIPEEI------GNFEWLETLDLSKNKLSGSI-- 297 (356)
Q Consensus 230 ~~~~~L~~L~L~~~~l~~~----~~~~~~~~~~L~~L~L~~n~i~~~~~~~~------~~~~~L~~L~L~~n~i~~~~-- 297 (356)
..+.+|+.|||..|.++.. ...+++.++.|++|.+.+|-++......+ ...|+|..|...+|.+.+..
T Consensus 211 ~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~ 290 (388)
T COG5238 211 FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIIL 290 (388)
T ss_pred HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceee
Confidence 3556777777777776642 23345566677777777776654332221 13567777777777665321
Q ss_pred ----Cccc-cCcCCCCEEEcccCcccc
Q 041463 298 ----PPSM-ASLIFMNHLNLSYNNLSG 319 (356)
Q Consensus 298 ----~~~~-~~l~~L~~L~l~~n~~~~ 319 (356)
+.+. ..+|-|..+.+.+|++..
T Consensus 291 ~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 291 DISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred eechhhhhhcccHHHHHHHHccCcchh
Confidence 1111 235666666677777654
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=5.6e-07 Score=74.35 Aligned_cols=110 Identities=27% Similarity=0.241 Sum_probs=75.1
Q ss_pred cccccEEeccccccccc--ccccccCCCCCcEEEcccCcccc--cccccccCCCCCcEEEeeccccccccCccc-cCCCC
Q 041463 78 LKQLITLVISNNNLSGE--IPLLFSNSSFLYILDMSNNSLSG--SIPESIGSLRTLRFLVLRNNYLSGELPLSL-KNCTF 152 (356)
Q Consensus 78 l~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l-~~l~~ 152 (356)
...+..+.+.++.|... ....-.....++++|+.+|.+.+ .....+.++|.|++|+++.|++. .....+ ....+
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~-s~I~~lp~p~~n 122 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS-SDIKSLPLPLKN 122 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC-CccccCcccccc
Confidence 34455667777766422 11222356789999999999873 23345678999999999999987 333333 35678
Q ss_pred CcEEEecCCcccccCCchhhcccccceeEEEcccCcc
Q 041463 153 MESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDL 189 (356)
Q Consensus 153 L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l 189 (356)
|+.|-+.+..+.-.....+....|. ++.|+++.|.+
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~-vtelHmS~N~~ 158 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPK-VTELHMSDNSL 158 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchh-hhhhhhccchh
Confidence 9999999988764555555555555 78888888754
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.17 E-value=1.5e-08 Score=86.97 Aligned_cols=277 Identities=17% Similarity=0.097 Sum_probs=130.3
Q ss_pred CcccceEEEcccc-cccccCCchHHhhccCCcEeeccCC-ccCCcCCCCC--CCCCCcEEecCCCcccCcCCCCCCcccC
Q 041463 1 NQTELRTLVLNKA-RISDTIPDWFWQLSLTLDELDVAYN-ELRGRVPNSL--GFNFPATVDLSSNNFEGRLPLCIPKSIG 76 (356)
Q Consensus 1 ~l~~L~~L~l~~~-~i~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 76 (356)
+++++++|.+.++ .+++..-..+...|+.+++|++..| .+++.....+ ++++|++|+++.+.-... ..+-.-.+
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~--~gv~~~~r 239 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG--NGVQALQR 239 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc--CcchHHhc
Confidence 3566666666666 4455555556666677777777664 3333222222 567777777776632211 01112334
Q ss_pred CcccccEEeccccccccc--ccccccCCCCCcEEEcccCc-ccccccccc-cCCCCCcEEEeecccc-ccccCcc-ccCC
Q 041463 77 NLKQLITLVISNNNLSGE--IPLLFSNSSFLYILDMSNNS-LSGSIPESI-GSLRTLRFLVLRNNYL-SGELPLS-LKNC 150 (356)
Q Consensus 77 ~l~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~~l-~~~~~~~-l~~l 150 (356)
++..++.+.+.+|.-... +...-..+..+..+++..|. +++.....+ ..+..|++|..+++.. ++..... ..+.
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 455555665555431100 01111223344555544443 222211111 1245566666666532 2221122 2455
Q ss_pred CCCcEEEecCCc-ccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccc
Q 041463 151 TFMESLDLGDNN-LSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYF 229 (356)
Q Consensus 151 ~~L~~L~l~~~~-l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (356)
.+|+.+.+.+++ +++.....+...++. |+.+++.++..... ..+. ..-
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~-Le~l~~e~~~~~~d--~tL~----------------------------sls 368 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPH-LERLDLEECGLITD--GTLA----------------------------SLS 368 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChh-hhhhcccccceehh--hhHh----------------------------hhc
Confidence 677777777765 333333333333333 66666665543211 0111 112
Q ss_pred cccccccEEeecCCccc-ccC----chhhhcccccCeEEccCCc-CcCCCCcCcCCCCCccEEEccCCc-ccccCC-ccc
Q 041463 230 TTLYLVNLLDLSSTNLS-AEI----PAELTSLVHLGTLNLSHNH-LVGKIPEEIGNFEWLETLDLSKNK-LSGSIP-PSM 301 (356)
Q Consensus 230 ~~~~~L~~L~L~~~~l~-~~~----~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~-~~~ 301 (356)
.+++.|+.+.++.|... ++. ...-.....|..+.+++++ +++...+.+..+++|+++++-+|+ ++.+.. .+-
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~ 448 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA 448 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH
Confidence 34556666777665532 221 1112334566677777776 344445556666777777777763 332222 222
Q ss_pred cCcCCCCEE
Q 041463 302 ASLIFMNHL 310 (356)
Q Consensus 302 ~~l~~L~~L 310 (356)
.++|++++.
T Consensus 449 ~~lp~i~v~ 457 (483)
T KOG4341|consen 449 THLPNIKVH 457 (483)
T ss_pred hhCccceeh
Confidence 345665543
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=3.5e-07 Score=66.74 Aligned_cols=114 Identities=25% Similarity=0.352 Sum_probs=75.9
Q ss_pred ccccccEEeecCCcccccCchhh-hcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCE
Q 041463 231 TLYLVNLLDLSSTNLSAEIPAEL-TSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNH 309 (356)
Q Consensus 231 ~~~~L~~L~L~~~~l~~~~~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 309 (356)
....|+..+|++|.+.+ +|..| ..++..+.|++++|.|. .+|+.+..++.|+.|+++.|.+. ..|..+..+.++-.
T Consensus 51 ~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred CCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 33456668888888874 44444 44567888888888887 67777888888888888888887 56666666777888
Q ss_pred EEcccCcccccCCCCcccCcCCCccccccCccccCCCCCCCCCCC
Q 041463 310 LNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCPEN 354 (356)
Q Consensus 310 L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~c~~~ 354 (356)
|+.-+|.....+.+ --++.+.-+. -.+| +||.=.|+.+
T Consensus 128 Lds~~na~~eid~d-l~~s~~~al~-~lgn-----epl~~~~~~k 165 (177)
T KOG4579|consen 128 LDSPENARAEIDVD-LFYSSLPALI-KLGN-----EPLGDETKKK 165 (177)
T ss_pred hcCCCCccccCcHH-HhccccHHHH-HhcC-----CcccccCccc
Confidence 88888877654443 2233332211 1233 7787777654
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=3.3e-06 Score=49.65 Aligned_cols=37 Identities=43% Similarity=0.671 Sum_probs=24.1
Q ss_pred cccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCccc
Q 041463 257 VHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294 (356)
Q Consensus 257 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~ 294 (356)
++|++|++++|+|+ .+|..++.+++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35677777777776 45555677777777777777776
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.98 E-value=3.1e-07 Score=67.02 Aligned_cols=98 Identities=29% Similarity=0.383 Sum_probs=77.7
Q ss_pred ccEEeecCCccccc--CchhhhcccccCeEEccCCcCcCCCCcCcC-CCCCccEEEccCCcccccCCccccCcCCCCEEE
Q 041463 235 VNLLDLSSTNLSAE--IPAELTSLVHLGTLNLSHNHLVGKIPEEIG-NFEWLETLDLSKNKLSGSIPPSMASLIFMNHLN 311 (356)
Q Consensus 235 L~~L~L~~~~l~~~--~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 311 (356)
+-.++|+.|.+... .+..+.....|+.++|++|.+. ..|..|. .++.++.|++++|++. .+|..++.++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 44488889887621 2233445567888899999998 6777665 4568999999999999 7888899999999999
Q ss_pred cccCcccccCCCCcccCcCCCcc
Q 041463 312 LSYNNLSGEIPNTNQFQTLNDPS 334 (356)
Q Consensus 312 l~~n~~~~~~~~~~~l~~l~~~~ 334 (356)
++.|++...+..+..+.+|-.++
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred cccCccccchHHHHHHHhHHHhc
Confidence 99999998887776677766665
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.92 E-value=2.8e-06 Score=81.02 Aligned_cols=59 Identities=25% Similarity=0.241 Sum_probs=25.7
Q ss_pred CcccccEEecccccccccccccccCCCCCcEEEcccCcccc-cccccccCCCCCcEEEeecc
Q 041463 77 NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSG-SIPESIGSLRTLRFLVLRNN 137 (356)
Q Consensus 77 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~ 137 (356)
++|+|+.||++++.++.. .+++.+++|+.|.+.+=.+.. ..-..+.++++|+.|++|..
T Consensus 171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred ccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 445555555555544422 334445555555444433331 11122334455555555443
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=4e-06 Score=79.95 Aligned_cols=135 Identities=26% Similarity=0.342 Sum_probs=77.7
Q ss_pred CCCCcEEecCCCcccCcCCCCCCcccC-CcccccEEeccccccccc-ccccccCCCCCcEEEcccCcccccccccccCCC
Q 041463 50 FNFPATVDLSSNNFEGRLPLCIPKSIG-NLKQLITLVISNNNLSGE-IPLLFSNSSFLYILDMSNNSLSGSIPESIGSLR 127 (356)
Q Consensus 50 ~~~L~~L~l~~n~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 127 (356)
-.+|++|++++...-.. .-+..++ .+|.|+.|.+.+-.+... .......+++|..||++++.+... ..+++++
T Consensus 121 r~nL~~LdI~G~~~~s~---~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lk 195 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSN---GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLK 195 (699)
T ss_pred HHhhhhcCccccchhhc---cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccc
Confidence 35777778777533211 0111122 367788887777555322 123355678888888888777744 4567777
Q ss_pred CCcEEEeecccccc-ccCccccCCCCCcEEEecCCcccccC--Cc---hhhcccccceeEEEcccCccc
Q 041463 128 TLRFLVLRNNYLSG-ELPLSLKNCTFMESLDLGDNNLSGNI--PA---WIGASMPGLLHILDLSHNDLS 190 (356)
Q Consensus 128 ~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~~~~--~~---~~~~~~~~~L~~L~l~~~~l~ 190 (356)
+|+.|.+.+-.+.. .....+..+++|+.||++........ .. .....+|. |+.||.+++.+.
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lpe-LrfLDcSgTdi~ 263 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPE-LRFLDCSGTDIN 263 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCcc-ccEEecCCcchh
Confidence 88877777765542 12234567788888888776543111 00 11122443 777887777654
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=0.00029 Score=62.47 Aligned_cols=12 Identities=25% Similarity=0.182 Sum_probs=6.0
Q ss_pred CCcEEEeecccc
Q 041463 128 TLRFLVLRNNYL 139 (356)
Q Consensus 128 ~L~~L~l~~~~l 139 (356)
+|++|.+++|..
T Consensus 157 SLk~L~Is~c~~ 168 (426)
T PRK15386 157 SLKTLSLTGCSN 168 (426)
T ss_pred cccEEEecCCCc
Confidence 455555555443
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00021 Score=63.26 Aligned_cols=15 Identities=7% Similarity=-0.046 Sum_probs=6.9
Q ss_pred CCCCcEEEcccCccc
Q 041463 102 SSFLYILDMSNNSLS 116 (356)
Q Consensus 102 l~~L~~L~l~~~~~~ 116 (356)
+.++++|++++|.+.
T Consensus 51 ~~~l~~L~Is~c~L~ 65 (426)
T PRK15386 51 ARASGRLYIKDCDIE 65 (426)
T ss_pred hcCCCEEEeCCCCCc
Confidence 344444454444433
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=5.3e-05 Score=59.37 Aligned_cols=105 Identities=21% Similarity=0.180 Sum_probs=73.1
Q ss_pred cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccC-CcccccEEecccccccccc-cccccCCCCC
Q 041463 28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIG-NLKQLITLVISNNNLSGEI-PLLFSNSSFL 105 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~~~-~~~~~~l~~L 105 (356)
.+...++|.+|.+. ....+-.++.|.+|.+.+|.|+..- ..+. -+++|..|.+.+|.+.... -..+..++.|
T Consensus 42 d~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~I~-----p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITRID-----PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred cccceecccccchh-hcccCCCccccceEEecCCcceeec-----cchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 56778888888776 5555557888889999988887422 2233 3577888888888876331 2346678889
Q ss_pred cEEEcccCccccccc---ccccCCCCCcEEEeeccc
Q 041463 106 YILDMSNNSLSGSIP---ESIGSLRTLRFLVLRNNY 138 (356)
Q Consensus 106 ~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~ 138 (356)
++|.+-+|.+....- -.+..+|+|+.|++..-.
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999888888764322 234567888888887643
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00012 Score=59.69 Aligned_cols=105 Identities=20% Similarity=0.191 Sum_probs=55.9
Q ss_pred CCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccc--cccccccccccCCCCCcEEEcccCcccccc-cccccCC
Q 041463 50 FNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNN--NLSGEIPLLFSNSSFLYILDMSNNSLSGSI-PESIGSL 126 (356)
Q Consensus 50 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~--~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l 126 (356)
+..|+.+++.+..++.. ..+..+|+|+.|.++.| ++.+-.+.....+++|+++++++|++.... -..+..+
T Consensus 42 ~~~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccchhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 44555555554444310 23555667777777777 444333344445577777777777765311 1223445
Q ss_pred CCCcEEEeeccccccccC---ccccCCCCCcEEEecC
Q 041463 127 RTLRFLVLRNNYLSGELP---LSLKNCTFMESLDLGD 160 (356)
Q Consensus 127 ~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l~~ 160 (356)
.+|..|++.+|..+.... ..+.-+++|++|+-..
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 666677777766553111 1234456666666544
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=2.5e-05 Score=64.27 Aligned_cols=81 Identities=15% Similarity=0.095 Sum_probs=48.3
Q ss_pred cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccc-cccccCCCCCc
Q 041463 28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEI-PLLFSNSSFLY 106 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~l~~L~ 106 (356)
.+.+.|+..+|.+.+ +..-..++.|+.|.|+-|+|+.- ..+..++.|++|+|..|.|.+.. -.++.++++|+
T Consensus 19 ~~vkKLNcwg~~L~D-Isic~kMp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD-ISICEKMPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHhhhhcccCCCccH-HHHHHhcccceeEEeeccccccc------hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 456777777777763 22222566777777777766521 34566677777777777665332 23455666666
Q ss_pred EEEcccCcc
Q 041463 107 ILDMSNNSL 115 (356)
Q Consensus 107 ~L~l~~~~~ 115 (356)
.|-|..|+-
T Consensus 92 ~LWL~ENPC 100 (388)
T KOG2123|consen 92 TLWLDENPC 100 (388)
T ss_pred hHhhccCCc
Confidence 666666554
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.83 E-value=0.0049 Score=45.94 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=34.2
Q ss_pred cCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCc
Q 041463 28 LTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLY 106 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 106 (356)
.+|+.+.+.. .+.......+ ++++|+.+.+..+ +. .++ ...|..++.++.+.+.. .+.......|..+++|+
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~---~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIG---DNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE----TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccc---eeeeecccccccccccc-ccccccccccccccccc
Confidence 4555555543 2333333333 2445555555543 22 111 12344444555555543 22212233444455555
Q ss_pred EEEcccCcccccccccccCCCCCcEEEee
Q 041463 107 ILDMSNNSLSGSIPESIGSLRTLRFLVLR 135 (356)
Q Consensus 107 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 135 (356)
.+++..+ +.......+.+. +++.+.+.
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 5555433 332333344443 45544443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.83 E-value=0.0045 Score=46.16 Aligned_cols=83 Identities=20% Similarity=0.272 Sum_probs=30.5
Q ss_pred cCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCc
Q 041463 75 IGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFME 154 (356)
Q Consensus 75 ~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 154 (356)
|..+.+|+.+.+.. .+.......|..+.+|+.+++.++ +.......|.++++++.+.+.+ .+.......+..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44444455554443 233233344445545555555443 3333344444554555555543 22212223344455555
Q ss_pred EEEecC
Q 041463 155 SLDLGD 160 (356)
Q Consensus 155 ~L~l~~ 160 (356)
.+++..
T Consensus 85 ~i~~~~ 90 (129)
T PF13306_consen 85 NIDIPS 90 (129)
T ss_dssp EEEETT
T ss_pred ccccCc
Confidence 555543
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.00065 Score=55.62 Aligned_cols=64 Identities=27% Similarity=0.332 Sum_probs=28.6
Q ss_pred ccccccccEEeecCC--cccccCchhhhcccccCeEEccCCcCcCCCCcCc---CCCCCccEEEccCCccc
Q 041463 229 FTTLYLVNLLDLSST--NLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEI---GNFEWLETLDLSKNKLS 294 (356)
Q Consensus 229 ~~~~~~L~~L~L~~~--~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~---~~~~~L~~L~L~~n~i~ 294 (356)
+..+++|++|.++.| .+.+.+......+|+|+++++++|+|.. ++.+ ..+++|..|++.+|..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 344455555555555 3333333333333555555555555431 2222 23344445555555444
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.79 E-value=0.0001 Score=68.59 Aligned_cols=110 Identities=24% Similarity=0.195 Sum_probs=50.0
Q ss_pred cccccEEeccccc-cccc-ccccccCCCCCcEEEcccC-cccccc----cccccCCCCCcEEEeeccc-cccccCcccc-
Q 041463 78 LKQLITLVISNNN-LSGE-IPLLFSNSSFLYILDMSNN-SLSGSI----PESIGSLRTLRFLVLRNNY-LSGELPLSLK- 148 (356)
Q Consensus 78 l~~L~~L~l~~~~-i~~~-~~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~- 148 (356)
++.|+.+.+..+. +... .......++.|+.|+++++ ...... ......+.+|+.|+++.+. +++.....+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4555555555552 2211 1223445566666666552 111011 1122234556666666555 4433222222
Q ss_pred CCCCCcEEEecCCc-ccccCCchhhcccccceeEEEcccCc
Q 041463 149 NCTFMESLDLGDNN-LSGNIPAWIGASMPGLLHILDLSHND 188 (356)
Q Consensus 149 ~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~L~~L~l~~~~ 188 (356)
.+++|+.|.+.++. +++..-..+...++. |++|++++|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~-L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPS-LRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCc-ccEEeeecCc
Confidence 25566666655554 444443444444443 6666666554
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.00024 Score=55.83 Aligned_cols=82 Identities=21% Similarity=0.204 Sum_probs=63.0
Q ss_pred ccccEEeecCCcccccCchhhhcccccCeEEccCCc-CcCCCCcCcC-CCCCccEEEccCC-cccccCCccccCcCCCCE
Q 041463 233 YLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNH-LVGKIPEEIG-NFEWLETLDLSKN-KLSGSIPPSMASLIFMNH 309 (356)
Q Consensus 233 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~-~~~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~ 309 (356)
..++.++-+++.|..+....+..++.++.|.+.+|. +.+...+-++ ..++|+.|+|++| +||+.....+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 357889999999887777778888899999999886 3322122222 4689999999999 888777777888899998
Q ss_pred EEccc
Q 041463 310 LNLSY 314 (356)
Q Consensus 310 L~l~~ 314 (356)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 88764
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.38 E-value=0.00021 Score=66.54 Aligned_cols=62 Identities=24% Similarity=0.212 Sum_probs=28.7
Q ss_pred CCCCCcEEEcccCc-ccccccccccC-CCCCcEEEeeccc-cccccC-ccccCCCCCcEEEecCCc
Q 041463 101 NSSFLYILDMSNNS-LSGSIPESIGS-LRTLRFLVLRNNY-LSGELP-LSLKNCTFMESLDLGDNN 162 (356)
Q Consensus 101 ~l~~L~~L~l~~~~-~~~~~~~~~~~-l~~L~~L~l~~~~-l~~~~~-~~l~~l~~L~~L~l~~~~ 162 (356)
.+.+|+.++++++. +++..-..+.. +++|+.|.+.++. +++... .....++.|+.|+++++.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 34555555555555 33333222222 4556666655444 332222 122344556666666554
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.00014 Score=59.90 Aligned_cols=83 Identities=23% Similarity=0.162 Sum_probs=37.8
Q ss_pred cccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccC-CccccCcCCCCEEEc
Q 041463 234 LVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSI-PPSMASLIFMNHLNL 312 (356)
Q Consensus 234 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l 312 (356)
+.++|++-||++.++ .....++.|+.|.|+-|.|+.. ..+..|++|+.|+|..|.|.+.. ..-+.++|+|+.|-|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 444455555555421 1223345555555555555421 23344555555555555554211 112344555555555
Q ss_pred ccCccccc
Q 041463 313 SYNNLSGE 320 (356)
Q Consensus 313 ~~n~~~~~ 320 (356)
..|+-.+.
T Consensus 96 ~ENPCc~~ 103 (388)
T KOG2123|consen 96 DENPCCGE 103 (388)
T ss_pred ccCCcccc
Confidence 55555443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.93 E-value=0.0034 Score=30.57 Aligned_cols=12 Identities=67% Similarity=0.822 Sum_probs=6.6
Q ss_pred ccEEEccCCccc
Q 041463 283 LETLDLSKNKLS 294 (356)
Q Consensus 283 L~~L~L~~n~i~ 294 (356)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555555
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.59 E-value=0.02 Score=27.77 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=14.0
Q ss_pred CCCEEEcccCcccccCCC
Q 041463 306 FMNHLNLSYNNLSGEIPN 323 (356)
Q Consensus 306 ~L~~L~l~~n~~~~~~~~ 323 (356)
+|++||+++|+++..++.
T Consensus 1 ~L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp TESEEEETSSEESEEGTT
T ss_pred CccEEECCCCcCEeCChh
Confidence 589999999999944433
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.37 E-value=0.026 Score=25.42 Aligned_cols=11 Identities=73% Similarity=1.002 Sum_probs=3.3
Q ss_pred ccEEEccCCcc
Q 041463 283 LETLDLSKNKL 293 (356)
Q Consensus 283 L~~L~L~~n~i 293 (356)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.05 E-value=0.00034 Score=64.10 Aligned_cols=185 Identities=25% Similarity=0.192 Sum_probs=107.1
Q ss_pred ceEEEcccccccccCCchHHhhc---cCCcEeeccCCccCCcCCCCC-----CC-CCCcEEecCCCcccCcCCCCCCccc
Q 041463 5 LRTLVLNKARISDTIPDWFWQLS---LTLDELDVAYNELRGRVPNSL-----GF-NFPATVDLSSNNFEGRLPLCIPKSI 75 (356)
Q Consensus 5 L~~L~l~~~~i~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~-----~~-~~L~~L~l~~n~~~~~~~~~~~~~~ 75 (356)
+.+|.|.+|.+.+.....+...+ ++|+.|+++.|.+.+.....+ .. ..+++|++..|.+++.....+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 56777788877755444443332 577888888887764322222 11 4566777777777765554455566
Q ss_pred CCcccccEEecccccccc----ccccccc----CCCCCcEEEcccCcccccc----cccccCCCC-CcEEEeeccccccc
Q 041463 76 GNLKQLITLVISNNNLSG----EIPLLFS----NSSFLYILDMSNNSLSGSI----PESIGSLRT-LRFLVLRNNYLSGE 142 (356)
Q Consensus 76 ~~l~~L~~L~l~~~~i~~----~~~~~~~----~l~~L~~L~l~~~~~~~~~----~~~~~~l~~-L~~L~l~~~~l~~~ 142 (356)
.....++.++++.|.+.. ..+..+. ...++++|.+.+|.++... ...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 667778888888877631 1222222 4667888888887765211 122333334 55577777766533
Q ss_pred ----cCccccCC-CCCcEEEecCCcccccCCchhhcc---cccceeEEEcccCccc
Q 041463 143 ----LPLSLKNC-TFMESLDLGDNNLSGNIPAWIGAS---MPGLLHILDLSHNDLS 190 (356)
Q Consensus 143 ----~~~~l~~l-~~L~~L~l~~~~l~~~~~~~~~~~---~~~~L~~L~l~~~~l~ 190 (356)
....+..+ ..++.++++.|.+.+......... .+ .++.+.++.+.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~-~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCR-QLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhH-HHHHhhcccCccc
Confidence 22333444 566788888887765544443332 22 3667777766543
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.91 E-value=0.081 Score=26.76 Aligned_cols=16 Identities=50% Similarity=0.536 Sum_probs=9.2
Q ss_pred CCccEEEccCCccccc
Q 041463 281 EWLETLDLSKNKLSGS 296 (356)
Q Consensus 281 ~~L~~L~L~~n~i~~~ 296 (356)
++|++|+|++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666633
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.91 E-value=0.081 Score=26.76 Aligned_cols=16 Identities=50% Similarity=0.536 Sum_probs=9.2
Q ss_pred CCccEEEccCCccccc
Q 041463 281 EWLETLDLSKNKLSGS 296 (356)
Q Consensus 281 ~~L~~L~L~~n~i~~~ 296 (356)
++|++|+|++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666633
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.85 E-value=0.022 Score=45.09 Aligned_cols=81 Identities=16% Similarity=0.041 Sum_probs=38.9
Q ss_pred ccEEecccccccccccccccCCCCCcEEEcccCccc-cccccccc-CCCCCcEEEeecc-ccccccCccccCCCCCcEEE
Q 041463 81 LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS-GSIPESIG-SLRTLRFLVLRNN-YLSGELPLSLKNCTFMESLD 157 (356)
Q Consensus 81 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~-~l~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~ 157 (356)
++.++-+++.|....-+.+.+++.++.|.+..|.-. +.--..+. -.++|+.|++++| .+++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 445555555554443444455555555555555421 11111111 1346666666665 34444444455566666666
Q ss_pred ecCC
Q 041463 158 LGDN 161 (356)
Q Consensus 158 l~~~ 161 (356)
+++=
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 5543
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.73 E-value=0.0036 Score=50.53 Aligned_cols=86 Identities=22% Similarity=0.213 Sum_probs=65.3
Q ss_pred cccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCE
Q 041463 230 TTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNH 309 (356)
Q Consensus 230 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 309 (356)
......+.||++.+++. ..-..|..+..+..|+++.|.+. ..|..+.+...+..+++.+|... ..|..+.+.++++.
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 34566777888888776 34445666777888888888887 77888888777888888888777 67777888888888
Q ss_pred EEcccCccc
Q 041463 310 LNLSYNNLS 318 (356)
Q Consensus 310 L~l~~n~~~ 318 (356)
+++.++++.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 888888764
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.39 E-value=0.061 Score=26.62 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=10.2
Q ss_pred cccceEEEcccccccccCC
Q 041463 2 QTELRTLVLNKARISDTIP 20 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~ 20 (356)
+++|++|+|++|.|++..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGA 19 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHH
T ss_pred CCCCCEEEccCCcCCHHHH
Confidence 3567777777777765433
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.99 E-value=0.0017 Score=59.64 Aligned_cols=168 Identities=22% Similarity=0.241 Sum_probs=110.8
Q ss_pred ccceEEEcccccccccCCchHHhhc----cCCcEeeccCCccCCcCCCCC-----CCCCCcEEecCCCcccCcCCCCCCc
Q 041463 3 TELRTLVLNKARISDTIPDWFWQLS----LTLDELDVAYNELRGRVPNSL-----GFNFPATVDLSSNNFEGRLPLCIPK 73 (356)
Q Consensus 3 ~~L~~L~l~~~~i~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~~~ 73 (356)
+.|..|+++.|.+.+.-...+.+.. ..+++|++..|.+++...... ....++.++++.|.+....-..++.
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~ 194 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ 194 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence 5677889999988755444444432 346778888888775543332 4778899999998874332223333
Q ss_pred ccC----CcccccEEeccccccccc----ccccccCCCC-CcEEEcccCccccc----ccccccCC-CCCcEEEeecccc
Q 041463 74 SIG----NLKQLITLVISNNNLSGE----IPLLFSNSSF-LYILDMSNNSLSGS----IPESIGSL-RTLRFLVLRNNYL 139 (356)
Q Consensus 74 ~~~----~l~~L~~L~l~~~~i~~~----~~~~~~~l~~-L~~L~l~~~~~~~~----~~~~~~~l-~~L~~L~l~~~~l 139 (356)
.+. ...++++|.+.+|.++.. ....+...+. +..+++..|.+.+. ..+.+..+ +.++.+++..|.+
T Consensus 195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi 274 (478)
T KOG4308|consen 195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSI 274 (478)
T ss_pred hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCc
Confidence 444 467899999999887632 1223445555 77789999887654 22334444 6788999999998
Q ss_pred ccccC----ccccCCCCCcEEEecCCcccccCCch
Q 041463 140 SGELP----LSLKNCTFMESLDLGDNNLSGNIPAW 170 (356)
Q Consensus 140 ~~~~~----~~l~~l~~L~~L~l~~~~l~~~~~~~ 170 (356)
++... ..+..++.++.+.+++|.+.+.....
T Consensus 275 ~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~ 309 (478)
T KOG4308|consen 275 TEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVEL 309 (478)
T ss_pred cccchHHHHHHHhhhHHHHHhhcccCccccHHHHH
Confidence 75433 44556778999999999887544433
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.23 E-value=0.011 Score=47.89 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=28.7
Q ss_pred cccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcc
Q 041463 232 LYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKL 293 (356)
Q Consensus 232 ~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i 293 (356)
++.+..|+++.+.+. -.|..+.....+..+.+.+|... ..|.++...+.++++++.++.+
T Consensus 64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 344444555544444 34444444444444444444444 4444555555555555555543
No 83
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=83.25 E-value=4.4 Score=36.88 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=7.2
Q ss_pred eeEEEcccCcccc
Q 041463 179 LHILDLSHNDLSG 191 (356)
Q Consensus 179 L~~L~l~~~~l~~ 191 (356)
++.+....|.+.+
T Consensus 356 ~q~l~~rdnnldg 368 (553)
T KOG4242|consen 356 VQVLLQRDNNLDG 368 (553)
T ss_pred eeEeecccccccc
Confidence 5666665555443
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.15 E-value=0.98 Score=23.27 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=10.5
Q ss_pred ccceEEEccccccccc
Q 041463 3 TELRTLVLNKARISDT 18 (356)
Q Consensus 3 ~~L~~L~l~~~~i~~~ 18 (356)
++|++|+|++|.+...
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 4577777777777643
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.40 E-value=1.9 Score=21.81 Aligned_cols=14 Identities=57% Similarity=0.717 Sum_probs=8.1
Q ss_pred CCccEEEccCCccc
Q 041463 281 EWLETLDLSKNKLS 294 (356)
Q Consensus 281 ~~L~~L~L~~n~i~ 294 (356)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34566666666654
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.20 E-value=1.8 Score=21.88 Aligned_cols=16 Identities=44% Similarity=0.754 Sum_probs=9.0
Q ss_pred CccEEEccCCcccccCC
Q 041463 282 WLETLDLSKNKLSGSIP 298 (356)
Q Consensus 282 ~L~~L~L~~n~i~~~~~ 298 (356)
+|+.|++++|+++ ..|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4556666666665 444
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=74.60 E-value=2.1 Score=21.50 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=9.0
Q ss_pred CCccEEEccCC-cccc
Q 041463 281 EWLETLDLSKN-KLSG 295 (356)
Q Consensus 281 ~~L~~L~L~~n-~i~~ 295 (356)
++|++|+|++| .+++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 56666667666 3443
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.07 E-value=1.3 Score=40.90 Aligned_cols=66 Identities=26% Similarity=0.171 Sum_probs=41.7
Q ss_pred cccccccEEeecCCcccccC--chhhhcccccCeEEccCC--cCcCCC-CcCcCCCCCccEEEccCCccccc
Q 041463 230 TTLYLVNLLDLSSTNLSAEI--PAELTSLVHLGTLNLSHN--HLVGKI-PEEIGNFEWLETLDLSKNKLSGS 296 (356)
Q Consensus 230 ~~~~~L~~L~L~~~~l~~~~--~~~~~~~~~L~~L~L~~n--~i~~~~-~~~~~~~~~L~~L~L~~n~i~~~ 296 (356)
.+.+.+..++|++|++.+.. ...-...|+|+.|+|++| .+.+.. ..-++ ...|++|-+.||++.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCccccc
Confidence 35567777888888887532 122234588899999998 343211 11122 34488899999988754
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.74 E-value=2.5 Score=39.15 Aligned_cols=34 Identities=26% Similarity=0.056 Sum_probs=17.4
Q ss_pred cCCcEeeccCCccCCcCCC---CCCCCCCcEEecCCC
Q 041463 28 LTLDELDVAYNELRGRVPN---SLGFNFPATVDLSSN 61 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~n 61 (356)
|.+..++|++|.+.....- +...++|++|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 5556666666655421110 113566666666666
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=38.94 E-value=18 Score=40.79 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=23.0
Q ss_pred EccCCcCcCCCCcCcCCCCCccEEEccCCccc
Q 041463 263 NLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294 (356)
Q Consensus 263 ~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~ 294 (356)
+|++|.|....+..|..+++|+.|+|++|...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46777777555556777788888888888665
No 91
>PF08119 Toxin_31: Scorpion acidic alpha-KTx toxin family; InterPro: IPR012635 This entry represents proteins that are acidic alpha-KTx short chain scorpion toxins. These toxins are named parabutoxins, that binds and inhibit voltage-sensitive potassium channels and inhibit the vertebrate potassium channel Kv1.1 with low affinity. Furthermore, they lack the crucial pore-plugging lysine. In addition, the second important residue of the dyad, the hydrophobic residue (Phe or Tyr) is also missing [].; GO: 0019870 potassium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region
Probab=33.93 E-value=24 Score=18.40 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=10.9
Q ss_pred ccccCCCCCCCCC
Q 041463 340 LALCGDPLPKKCP 352 (356)
Q Consensus 340 ~~~~~~~~~~~c~ 352 (356)
-++|.-|..|.|+
T Consensus 24 tgvcdgpqkckcs 36 (37)
T PF08119_consen 24 TGVCDGPQKCKCS 36 (37)
T ss_pred cccccCCcccccC
Confidence 4688899999996
No 92
>PF15322 PMSI1: Protein missing in infertile sperm 1, putative
Probab=31.43 E-value=18 Score=30.40 Aligned_cols=9 Identities=22% Similarity=0.549 Sum_probs=7.8
Q ss_pred CCCCCCCCC
Q 041463 345 DPLPKKCPE 353 (356)
Q Consensus 345 ~~~~~~c~~ 353 (356)
-||+|+|+.
T Consensus 185 GPWhCHCks 193 (311)
T PF15322_consen 185 GPWHCHCKS 193 (311)
T ss_pred CCceeeecC
Confidence 689999985
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=24.21 E-value=98 Score=28.69 Aligned_cols=66 Identities=24% Similarity=0.261 Sum_probs=36.2
Q ss_pred CCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccc---cCCCCCcEEEecCCcccccCCch
Q 041463 103 SFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSL---KNCTFMESLDLGDNNLSGNIPAW 170 (356)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l---~~l~~L~~L~l~~~~l~~~~~~~ 170 (356)
+.+++++++.|.+.+..|..+.....= +.++.|+.+..+...+ ..-..+.+++++.|...+.++..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p--l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~ 233 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP--LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRT 233 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc--cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhH
Confidence 557788888888777666655542211 4455555443222111 11124667777777666555544
Done!